Query 014511
Match_columns 423
No_of_seqs 551 out of 3296
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 12:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fwy_A Light-independent proto 100.0 9.4E-35 3.2E-39 275.5 21.2 233 67-313 46-295 (314)
2 1g3q_A MIND ATPase, cell divis 100.0 5.1E-34 1.7E-38 261.3 19.3 229 68-311 1-236 (237)
3 3ea0_A ATPase, para family; al 100.0 1.4E-34 4.7E-39 266.3 14.3 228 67-310 2-244 (245)
4 2ph1_A Nucleotide-binding prot 100.0 5.7E-33 2E-37 258.3 21.2 227 62-290 11-244 (262)
5 3q9l_A Septum site-determining 100.0 8.8E-34 3E-38 263.3 15.6 231 68-311 1-249 (260)
6 1hyq_A MIND, cell division inh 100.0 3.9E-33 1.3E-37 259.5 15.6 228 68-311 1-235 (263)
7 1wcv_1 SOJ, segregation protei 100.0 2.5E-33 8.5E-38 260.0 11.7 231 67-314 4-248 (257)
8 4dzz_A Plasmid partitioning pr 100.0 2.1E-32 7.3E-37 244.9 15.7 199 69-312 1-205 (206)
9 3end_A Light-independent proto 100.0 8.6E-32 2.9E-36 256.2 20.1 231 66-312 38-287 (307)
10 1cp2_A CP2, nitrogenase iron p 100.0 2.8E-32 9.7E-37 254.6 15.3 234 69-312 1-248 (269)
11 3k9g_A PF-32 protein; ssgcid, 100.0 6.4E-32 2.2E-36 251.9 17.5 229 67-312 25-267 (267)
12 2afh_E Nitrogenase iron protei 100.0 4.6E-32 1.6E-36 255.8 15.9 232 69-311 2-250 (289)
13 3kjh_A CO dehydrogenase/acetyl 100.0 1E-31 3.5E-36 248.0 17.1 224 71-312 2-253 (254)
14 3pg5_A Uncharacterized protein 100.0 9.7E-31 3.3E-35 253.9 16.5 243 69-313 1-350 (361)
15 3ez9_A Para; DNA binding, wing 100.0 5.4E-31 1.9E-35 259.9 13.5 242 66-316 108-399 (403)
16 3ez2_A Plasmid partition prote 100.0 1.2E-31 4.2E-36 264.2 8.8 242 66-316 105-396 (398)
17 2oze_A ORF delta'; para, walke 100.0 6.1E-31 2.1E-35 249.3 12.5 239 67-316 32-294 (298)
18 3cwq_A Para family chromosome 100.0 3.5E-30 1.2E-34 231.2 11.3 198 70-316 1-203 (209)
19 3luu_A Uncharacterized protein 100.0 2.7E-29 9.1E-34 196.5 9.0 92 319-413 8-100 (101)
20 2xj4_A MIPZ; replication, cell 100.0 4E-30 1.4E-34 242.1 2.8 224 68-309 3-265 (286)
21 3la6_A Tyrosine-protein kinase 99.9 3.5E-26 1.2E-30 214.2 16.1 172 66-244 89-268 (286)
22 3bfv_A CAPA1, CAPB2, membrane 99.9 1.1E-25 3.7E-30 209.5 14.1 171 66-243 79-257 (271)
23 2l6n_A Uncharacterized protein 99.9 5E-26 1.7E-30 184.8 9.4 90 319-413 10-100 (132)
24 2l6p_A PHAC1, PHAC2 and PHAD g 99.9 8.9E-26 3E-30 181.9 9.5 88 319-412 4-92 (124)
25 3ug7_A Arsenical pump-driving 99.9 3E-25 1E-29 214.1 14.4 201 67-276 23-316 (349)
26 3cio_A ETK, tyrosine-protein k 99.9 4.8E-25 1.6E-29 208.1 14.3 173 66-244 101-280 (299)
27 3fkq_A NTRC-like two-domain pr 99.9 7.4E-26 2.5E-30 220.7 8.5 196 67-278 141-353 (373)
28 3zq6_A Putative arsenical pump 99.9 2E-25 6.9E-30 213.4 8.4 206 69-276 13-301 (324)
29 2woj_A ATPase GET3; tail-ancho 99.9 2.4E-24 8.1E-29 207.9 8.9 174 67-241 15-275 (354)
30 3iqw_A Tail-anchored protein t 99.9 7.7E-23 2.6E-27 195.2 13.7 201 67-275 13-303 (334)
31 2woo_A ATPase GET3; tail-ancho 99.9 7.3E-23 2.5E-27 195.9 10.4 206 67-275 16-300 (329)
32 3o2g_A Gamma-butyrobetaine dio 99.9 1.1E-22 3.7E-27 198.4 7.8 88 322-411 8-95 (388)
33 1byi_A Dethiobiotin synthase; 99.9 8.5E-22 2.9E-26 178.3 12.8 197 69-277 1-208 (224)
34 3io3_A DEHA2D07832P; chaperone 99.9 1.2E-22 4.1E-27 194.8 7.0 205 66-275 14-312 (348)
35 3igf_A ALL4481 protein; two-do 99.8 2.4E-19 8.1E-24 173.0 16.8 267 70-400 2-371 (374)
36 1ihu_A Arsenical pump-driving 99.8 1.7E-19 5.8E-24 186.2 6.6 165 70-243 8-240 (589)
37 1ihu_A Arsenical pump-driving 99.8 4.1E-19 1.4E-23 183.3 8.0 205 67-276 324-569 (589)
38 2xxa_A Signal recognition part 99.7 1.2E-16 3.9E-21 157.6 13.5 167 67-269 98-271 (433)
39 1j8m_F SRP54, signal recogniti 99.6 1.2E-15 3.9E-20 143.3 11.2 166 69-270 98-271 (297)
40 1zu4_A FTSY; GTPase, signal re 99.6 1.1E-14 3.8E-19 138.0 14.2 172 67-270 103-286 (320)
41 1ls1_A Signal recognition part 99.6 9.6E-15 3.3E-19 137.2 11.6 167 68-270 97-269 (295)
42 3of5_A Dethiobiotin synthetase 99.6 4.7E-15 1.6E-19 133.9 8.7 194 67-273 2-206 (228)
43 2ffh_A Protein (FFH); SRP54, s 99.5 4.6E-14 1.6E-18 138.1 11.6 167 68-270 97-269 (425)
44 1yrb_A ATP(GTP)binding protein 99.5 3.4E-14 1.2E-18 131.2 6.0 47 67-114 11-57 (262)
45 3fgn_A Dethiobiotin synthetase 99.4 8.2E-13 2.8E-17 120.4 13.0 193 67-276 24-225 (251)
46 3dm5_A SRP54, signal recogniti 99.4 7.1E-13 2.4E-17 129.8 13.4 167 68-270 99-271 (443)
47 2v3c_C SRP54, signal recogniti 99.4 1.5E-12 5.2E-17 128.1 15.2 165 68-270 98-270 (432)
48 3qxc_A Dethiobiotin synthetase 99.4 2.5E-12 8.5E-17 116.6 12.4 176 62-243 14-202 (242)
49 2j37_W Signal recognition part 99.4 1.5E-12 5.3E-17 130.0 11.9 167 67-269 99-271 (504)
50 3kl4_A SRP54, signal recogniti 99.3 4.9E-12 1.7E-16 123.9 12.5 167 68-270 96-270 (433)
51 1vma_A Cell division protein F 99.3 1.7E-11 5.9E-16 115.2 14.1 169 67-271 102-282 (306)
52 2px0_A Flagellar biosynthesis 99.2 7E-11 2.4E-15 110.7 9.1 161 68-270 104-271 (296)
53 3p32_A Probable GTPase RV1496/ 99.0 1.9E-09 6.4E-14 103.9 10.6 152 67-242 77-229 (355)
54 2r8r_A Sensor protein; KDPD, P 98.9 2.1E-09 7.1E-14 95.4 6.9 46 68-113 4-49 (228)
55 2p67_A LAO/AO transport system 98.5 1.2E-06 4.2E-11 83.6 13.6 127 67-212 54-181 (341)
56 3e70_C DPA, signal recognition 98.4 3.3E-06 1.1E-10 79.9 13.0 169 67-271 127-301 (328)
57 3lno_A Putative uncharacterize 98.3 6.2E-07 2.1E-11 70.3 5.7 52 2-53 37-90 (108)
58 3cq1_A Putative uncharacterize 98.3 7.3E-07 2.5E-11 69.4 6.0 52 2-53 35-86 (103)
59 2yhs_A FTSY, cell division pro 98.3 6.4E-06 2.2E-10 81.4 14.1 167 68-270 292-470 (503)
60 4a0g_A Adenosylmethionine-8-am 98.3 1.5E-06 5E-11 92.5 10.1 88 176-276 201-298 (831)
61 1uwd_A Hypothetical protein TM 98.3 1.2E-06 4E-11 68.2 6.4 52 2-53 35-87 (103)
62 2obn_A Hypothetical protein; s 98.2 7.5E-06 2.6E-10 77.3 11.7 166 69-274 152-337 (349)
63 3pzx_A Formate--tetrahydrofola 98.2 1.3E-06 4.6E-11 84.4 5.6 52 67-121 55-109 (557)
64 1rj9_A FTSY, signal recognitio 98.0 9E-05 3.1E-09 69.3 15.0 43 68-111 101-143 (304)
65 2rdo_7 EF-G, elongation factor 97.8 0.00014 4.6E-09 76.0 11.9 93 175-274 80-173 (704)
66 1xjc_A MOBB protein homolog; s 97.6 6.5E-05 2.2E-09 63.7 6.0 43 67-110 2-44 (169)
67 2h5e_A Peptide chain release f 97.6 0.0003 1E-08 70.9 11.1 88 175-269 80-167 (529)
68 1g5t_A COB(I)alamin adenosyltr 97.5 0.00029 9.8E-09 60.9 8.8 37 71-108 30-66 (196)
69 2og2_A Putative signal recogni 97.5 0.0011 3.7E-08 63.3 13.4 42 68-110 156-197 (359)
70 1u94_A RECA protein, recombina 97.4 0.00018 6.3E-09 68.7 6.9 39 69-108 63-101 (356)
71 2www_A Methylmalonic aciduria 97.4 0.0016 5.4E-08 62.1 12.4 43 69-112 74-116 (349)
72 1xp8_A RECA protein, recombina 97.3 0.00059 2E-08 65.3 8.1 39 69-108 74-112 (366)
73 2qm8_A GTPase/ATPase; G protei 97.2 0.003 1E-07 59.8 12.4 42 68-110 54-95 (337)
74 3luu_A Uncharacterized protein 97.2 0.00019 6.4E-09 55.3 2.8 35 378-412 7-42 (101)
75 3con_A GTPase NRAS; structural 97.1 0.011 3.9E-07 50.2 14.3 86 176-267 68-158 (190)
76 2g0t_A Conserved hypothetical 97.1 0.0036 1.2E-07 59.1 11.0 137 69-239 169-323 (350)
77 2c78_A Elongation factor TU-A; 97.0 0.0043 1.5E-07 60.3 11.7 68 175-243 73-141 (405)
78 2zr9_A Protein RECA, recombina 97.0 0.0011 3.9E-08 63.0 7.3 39 69-108 61-99 (349)
79 3iev_A GTP-binding protein ERA 96.9 0.0056 1.9E-07 57.2 11.3 85 176-265 58-153 (308)
80 1dar_A EF-G, elongation factor 96.9 0.0048 1.6E-07 64.2 11.6 86 175-267 75-160 (691)
81 2ce2_X GTPase HRAS; signaling 96.9 0.025 8.4E-07 46.4 14.0 87 175-267 49-140 (166)
82 2yvu_A Probable adenylyl-sulfa 96.9 0.0014 4.8E-08 56.2 6.0 41 68-109 12-52 (186)
83 2b8t_A Thymidine kinase; deoxy 96.9 0.0042 1.4E-07 55.0 9.2 35 71-105 13-47 (223)
84 1vco_A CTP synthetase; tetrame 96.9 0.005 1.7E-07 61.6 10.6 49 67-115 10-59 (550)
85 1np6_A Molybdopterin-guanine d 96.8 0.0019 6.6E-08 54.9 6.6 42 68-110 5-46 (174)
86 2elf_A Protein translation elo 96.8 0.0068 2.3E-07 58.1 10.6 67 175-242 58-125 (370)
87 3tr5_A RF-3, peptide chain rel 96.8 0.00077 2.6E-08 67.9 4.1 88 174-268 79-166 (528)
88 3iby_A Ferrous iron transport 96.8 0.0089 3E-07 54.2 10.8 89 175-271 46-146 (256)
89 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0015 5.3E-08 59.4 5.6 40 69-109 4-43 (260)
90 2lkc_A Translation initiation 96.7 0.059 2E-06 44.9 15.3 66 176-242 54-119 (178)
91 2xex_A Elongation factor G; GT 96.7 0.011 3.9E-07 61.5 12.7 86 175-267 73-158 (693)
92 1kao_A RAP2A; GTP-binding prot 96.7 0.078 2.7E-06 43.4 15.6 67 176-243 50-121 (167)
93 3vqt_A RF-3, peptide chain rel 96.7 0.012 4.2E-07 59.4 12.1 89 174-269 97-185 (548)
94 1d2e_A Elongation factor TU (E 96.7 0.0055 1.9E-07 59.4 9.1 68 175-243 64-132 (397)
95 3oes_A GTPase rhebl1; small GT 96.6 0.07 2.4E-06 45.8 15.1 87 175-266 70-161 (201)
96 3hr8_A Protein RECA; alpha and 96.6 0.0038 1.3E-07 59.3 7.3 39 69-108 61-99 (356)
97 1s1m_A CTP synthase; CTP synth 96.6 0.0099 3.4E-07 59.5 10.5 47 69-115 3-50 (545)
98 1nks_A Adenylate kinase; therm 96.6 0.0021 7.2E-08 55.1 5.1 38 69-107 1-38 (194)
99 2wsm_A Hydrogenase expression/ 96.5 0.0025 8.6E-08 56.0 5.4 41 68-110 29-69 (221)
100 3b9q_A Chloroplast SRP recepto 96.5 0.0036 1.2E-07 58.3 6.6 42 68-110 99-140 (302)
101 3t1o_A Gliding protein MGLA; G 96.5 0.051 1.8E-06 46.1 13.6 68 175-243 72-148 (198)
102 2a9k_A RAS-related protein RAL 96.5 0.034 1.2E-06 46.8 12.1 67 176-243 65-136 (187)
103 3clv_A RAB5 protein, putative; 96.5 0.078 2.7E-06 45.1 14.6 64 177-241 93-158 (208)
104 2gco_A H9, RHO-related GTP-bin 96.5 0.026 8.8E-07 48.7 11.4 67 176-243 72-142 (201)
105 2hxs_A RAB-26, RAS-related pro 96.5 0.069 2.3E-06 44.5 13.9 88 176-267 55-148 (178)
106 2h57_A ADP-ribosylation factor 96.4 0.038 1.3E-06 47.0 12.1 68 175-243 65-139 (190)
107 1wf3_A GTP-binding protein; GT 96.4 0.02 6.9E-07 53.2 10.9 68 175-243 53-130 (301)
108 1rz3_A Hypothetical protein rb 96.4 0.0048 1.6E-07 53.7 6.2 41 69-110 22-62 (201)
109 1z2a_A RAS-related protein RAB 96.4 0.025 8.4E-07 46.7 10.5 87 176-267 53-142 (168)
110 2gf9_A RAS-related protein RAB 96.4 0.029 1E-06 47.6 11.1 86 176-266 70-159 (189)
111 1u8z_A RAS-related protein RAL 96.4 0.037 1.3E-06 45.5 11.3 67 176-243 51-122 (168)
112 2efe_B Small GTP-binding prote 96.3 0.045 1.5E-06 45.8 12.0 87 176-266 60-149 (181)
113 2nzj_A GTP-binding protein REM 96.3 0.059 2E-06 44.7 12.7 68 176-244 51-125 (175)
114 4bas_A ADP-ribosylation factor 96.3 0.19 6.6E-06 42.6 16.0 68 175-243 61-140 (199)
115 1upt_A ARL1, ADP-ribosylation 96.3 0.17 5.9E-06 41.6 15.1 67 175-242 49-120 (171)
116 2g6b_A RAS-related protein RAB 96.2 0.076 2.6E-06 44.3 12.9 87 176-267 59-149 (180)
117 1zj6_A ADP-ribosylation factor 96.2 0.19 6.6E-06 42.3 15.4 68 175-242 58-129 (187)
118 3bc1_A RAS-related protein RAB 96.2 0.076 2.6E-06 44.8 12.7 87 176-267 69-160 (195)
119 2dr3_A UPF0273 protein PH0284; 96.2 0.0054 1.8E-07 54.8 5.4 39 70-109 24-62 (247)
120 3dz8_A RAS-related protein RAB 96.2 0.018 6.1E-07 49.1 8.6 88 175-267 70-161 (191)
121 1r8s_A ADP-ribosylation factor 96.2 0.27 9.1E-06 40.1 15.7 67 175-242 42-113 (164)
122 3t5g_A GTP-binding protein RHE 96.2 0.1 3.5E-06 43.7 13.3 86 176-266 53-143 (181)
123 1a7j_A Phosphoribulokinase; tr 96.2 0.0026 8.8E-08 58.9 3.3 42 68-110 4-45 (290)
124 1g16_A RAS-related protein SEC 96.1 0.048 1.6E-06 45.0 11.0 86 176-267 51-140 (170)
125 3bh0_A DNAB-like replicative h 96.1 0.0055 1.9E-07 57.4 5.5 38 70-108 69-106 (315)
126 2f1r_A Molybdopterin-guanine d 96.1 0.0052 1.8E-07 52.1 4.6 41 68-109 1-41 (171)
127 1ky3_A GTP-binding protein YPT 96.1 0.13 4.3E-06 42.9 13.4 67 175-242 56-130 (182)
128 2bcg_Y Protein YP2, GTP-bindin 96.1 0.065 2.2E-06 46.1 11.8 88 176-267 56-146 (206)
129 3tkl_A RAS-related protein RAB 96.1 0.079 2.7E-06 45.0 12.2 88 176-268 64-155 (196)
130 2cvh_A DNA repair and recombin 96.0 0.0066 2.2E-07 53.2 5.3 36 70-109 21-56 (220)
131 2hf9_A Probable hydrogenase ni 96.0 0.0071 2.4E-07 53.3 5.4 40 68-109 37-76 (226)
132 2dyk_A GTP-binding protein; GT 96.0 0.048 1.6E-06 44.6 10.2 66 176-242 48-120 (161)
133 2fg5_A RAB-22B, RAS-related pr 96.0 0.056 1.9E-06 46.0 10.9 69 175-243 70-141 (192)
134 1uj2_A Uridine-cytidine kinase 96.0 0.0054 1.9E-07 55.4 4.5 42 68-110 21-67 (252)
135 1z08_A RAS-related protein RAB 96.0 0.067 2.3E-06 44.2 11.0 87 176-267 54-144 (170)
136 1z0j_A RAB-22, RAS-related pro 96.0 0.044 1.5E-06 45.2 9.9 68 176-243 54-124 (170)
137 1zd9_A ADP-ribosylation factor 95.9 0.099 3.4E-06 44.3 12.2 68 175-243 65-137 (188)
138 4a1f_A DNAB helicase, replicat 95.9 0.0077 2.6E-07 56.8 5.3 39 70-109 47-85 (338)
139 3ux2_A MIP18 family protein FA 95.9 0.002 6.7E-08 51.2 1.0 43 7-49 49-92 (130)
140 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.009 3.1E-07 52.7 5.4 40 69-109 23-62 (235)
141 2pez_A Bifunctional 3'-phospho 95.9 0.011 3.9E-07 50.0 5.8 40 69-109 5-44 (179)
142 3bgw_A DNAB-like replicative h 95.9 0.0068 2.3E-07 59.6 4.9 39 72-110 199-237 (444)
143 2erx_A GTP-binding protein DI- 95.9 0.045 1.5E-06 45.2 9.5 67 176-243 50-122 (172)
144 2ew1_A RAS-related protein RAB 95.8 0.11 3.9E-06 44.7 12.2 68 176-243 74-144 (201)
145 3uie_A Adenylyl-sulfate kinase 95.8 0.012 4E-07 51.0 5.8 42 67-109 23-64 (200)
146 3i8s_A Ferrous iron transport 95.8 0.052 1.8E-06 49.5 10.4 89 175-271 48-148 (274)
147 1r2q_A RAS-related protein RAB 95.8 0.048 1.6E-06 45.0 9.4 68 176-243 54-124 (170)
148 4dsu_A GTPase KRAS, isoform 2B 95.7 0.13 4.3E-06 43.3 12.1 87 176-268 51-142 (189)
149 1z0f_A RAB14, member RAS oncog 95.7 0.069 2.3E-06 44.5 10.2 67 176-243 63-133 (179)
150 2fv8_A H6, RHO-related GTP-bin 95.7 0.063 2.2E-06 46.4 10.2 67 176-243 72-142 (207)
151 3cph_A RAS-related protein SEC 95.7 0.099 3.4E-06 45.1 11.4 86 176-267 68-157 (213)
152 2fn4_A P23, RAS-related protei 95.7 0.12 4E-06 43.1 11.5 67 176-243 56-127 (181)
153 3kkq_A RAS-related protein M-R 95.7 0.088 3E-06 44.2 10.7 87 177-268 66-157 (183)
154 2c5m_A CTP synthase; cytidine 95.7 0.08 2.7E-06 46.9 10.2 50 67-116 21-71 (294)
155 1m7g_A Adenylylsulfate kinase; 95.6 0.011 3.6E-07 51.8 4.9 40 68-108 24-64 (211)
156 3tw8_B RAS-related protein RAB 95.6 0.047 1.6E-06 45.6 8.9 87 177-267 58-146 (181)
157 2a5j_A RAS-related protein RAB 95.6 0.18 6.1E-06 42.7 12.6 86 176-266 69-158 (191)
158 1fzq_A ADP-ribosylation factor 95.6 0.23 7.8E-06 41.7 13.2 68 175-243 58-130 (181)
159 2dy1_A Elongation factor G; tr 95.6 0.035 1.2E-06 57.4 9.3 83 175-265 72-154 (665)
160 3t61_A Gluconokinase; PSI-biol 95.6 0.0077 2.6E-07 52.2 3.7 40 64-109 13-52 (202)
161 3ec2_A DNA replication protein 95.6 0.0086 3E-07 50.8 3.9 36 70-106 39-75 (180)
162 2w58_A DNAI, primosome compone 95.6 0.014 4.9E-07 50.4 5.4 37 70-107 55-91 (202)
163 1ek0_A Protein (GTP-binding pr 95.6 0.11 3.8E-06 42.7 10.8 89 176-266 51-143 (170)
164 1kht_A Adenylate kinase; phosp 95.6 0.0093 3.2E-07 50.9 4.1 37 70-107 4-40 (192)
165 2bov_A RAla, RAS-related prote 95.6 0.16 5.4E-06 43.4 12.2 67 176-243 61-132 (206)
166 3p26_A Elongation factor 1 alp 95.5 0.12 4.1E-06 51.3 12.7 69 175-243 109-184 (483)
167 3q72_A GTP-binding protein RAD 95.5 0.12 4.1E-06 42.4 10.9 86 176-266 48-138 (166)
168 2b6h_A ADP-ribosylation factor 95.5 0.25 8.6E-06 41.9 13.0 82 175-266 71-157 (192)
169 2atv_A RERG, RAS-like estrogen 95.4 0.17 5.7E-06 43.1 11.8 67 176-244 75-146 (196)
170 1zbd_A Rabphilin-3A; G protein 95.4 0.11 3.9E-06 44.4 10.7 87 176-267 56-146 (203)
171 3a1s_A Iron(II) transport prot 95.4 0.11 3.9E-06 46.8 11.0 89 175-271 50-146 (258)
172 3lvq_E ARF-GAP with SH3 domain 95.4 0.23 7.9E-06 49.3 14.3 123 175-321 364-491 (497)
173 1ksh_A ARF-like protein 2; sma 95.4 0.39 1.3E-05 40.2 13.8 68 175-243 60-132 (186)
174 2pbr_A DTMP kinase, thymidylat 95.4 0.022 7.4E-07 48.6 5.8 34 71-105 2-35 (195)
175 2x77_A ADP-ribosylation factor 95.4 0.28 9.5E-06 41.3 12.9 67 175-242 64-135 (189)
176 1m2o_B GTP-binding protein SAR 95.3 0.38 1.3E-05 40.7 13.7 82 175-266 65-151 (190)
177 3j25_A Tetracycline resistance 95.3 0.024 8.1E-07 58.4 6.9 88 174-268 64-151 (638)
178 1e6c_A Shikimate kinase; phosp 95.3 0.011 3.8E-07 49.6 3.7 35 68-108 1-35 (173)
179 1qhx_A CPT, protein (chloramph 95.3 0.012 4.1E-07 49.7 3.9 34 72-108 5-38 (178)
180 3k53_A Ferrous iron transport 95.3 0.017 5.9E-07 52.6 5.2 89 175-271 48-145 (271)
181 2l6n_A Uncharacterized protein 95.3 0.013 4.3E-07 47.1 3.6 35 378-412 9-44 (132)
182 3trf_A Shikimate kinase, SK; a 95.3 0.011 3.8E-07 50.3 3.5 35 68-108 4-38 (185)
183 2zts_A Putative uncharacterize 95.2 0.019 6.4E-07 51.2 5.1 38 72-109 32-70 (251)
184 1cr0_A DNA primase/helicase; R 95.2 0.023 7.8E-07 52.4 5.8 39 69-108 35-74 (296)
185 2hup_A RAS-related protein RAB 95.2 0.22 7.5E-06 42.7 11.8 86 176-266 77-166 (201)
186 4dcu_A GTP-binding protein ENG 95.2 0.035 1.2E-06 54.7 7.3 67 175-242 69-143 (456)
187 2gks_A Bifunctional SAT/APS ki 95.1 0.019 6.6E-07 57.9 5.3 39 69-108 372-410 (546)
188 2oil_A CATX-8, RAS-related pro 95.1 0.3 1E-05 41.3 12.3 68 176-243 73-143 (193)
189 2q6t_A DNAB replication FORK h 95.1 0.021 7.3E-07 56.1 5.5 38 70-108 201-239 (444)
190 1via_A Shikimate kinase; struc 95.1 0.011 3.9E-07 49.8 3.1 35 68-108 3-37 (175)
191 2z0h_A DTMP kinase, thymidylat 95.1 0.029 1E-06 48.0 5.8 35 71-106 2-36 (197)
192 1moz_A ARL1, ADP-ribosylation 95.1 0.33 1.1E-05 40.4 12.4 81 176-265 61-145 (183)
193 3pqc_A Probable GTP-binding pr 95.1 0.099 3.4E-06 44.2 9.1 42 201-243 105-146 (195)
194 1xx6_A Thymidine kinase; NESG, 95.0 0.037 1.3E-06 47.6 6.2 36 69-105 8-43 (191)
195 2orw_A Thymidine kinase; TMTK, 95.0 0.022 7.6E-07 48.7 4.7 36 70-106 4-39 (184)
196 3cpj_B GTP-binding protein YPT 95.0 0.33 1.1E-05 42.3 12.6 67 176-243 61-131 (223)
197 3sjy_A Translation initiation 95.0 0.089 3E-06 50.9 9.6 67 177-243 75-142 (403)
198 2r6a_A DNAB helicase, replicat 95.0 0.026 8.8E-07 55.7 5.8 40 69-109 203-243 (454)
199 4fn5_A EF-G 1, elongation fact 95.0 0.3 1E-05 50.9 14.1 87 175-268 83-169 (709)
200 2o52_A RAS-related protein RAB 95.0 0.21 7.2E-06 42.7 11.0 67 176-243 73-143 (200)
201 1z06_A RAS-related protein RAB 95.0 0.19 6.4E-06 42.4 10.6 87 176-267 68-160 (189)
202 1q57_A DNA primase/helicase; d 95.0 0.015 5.2E-07 58.1 4.1 39 70-109 243-282 (503)
203 1jny_A EF-1-alpha, elongation 95.0 0.12 4E-06 50.6 10.4 70 174-243 81-157 (435)
204 2h17_A ADP-ribosylation factor 95.0 0.2 6.8E-06 42.0 10.6 68 175-242 63-134 (181)
205 1x3s_A RAS-related protein RAB 94.9 0.13 4.5E-06 43.5 9.5 67 176-242 63-133 (195)
206 3q85_A GTP-binding protein REM 94.9 0.085 2.9E-06 43.5 8.1 87 176-267 50-142 (169)
207 3bos_A Putative DNA replicatio 94.9 0.034 1.2E-06 49.0 5.8 39 69-108 52-90 (242)
208 3o47_A ADP-ribosylation factor 94.9 0.38 1.3E-05 45.0 13.3 83 175-267 207-294 (329)
209 2y8e_A RAB-protein 6, GH09086P 94.9 0.18 6.1E-06 41.8 10.0 67 176-243 62-132 (179)
210 2xtp_A GTPase IMAP family memb 94.9 0.083 2.8E-06 47.5 8.4 21 70-91 23-43 (260)
211 1c1y_A RAS-related protein RAP 94.8 0.16 5.4E-06 41.6 9.5 68 175-243 49-121 (167)
212 2ywe_A GTP-binding protein LEP 94.8 0.15 5.2E-06 51.8 11.0 84 176-266 72-155 (600)
213 2p5s_A RAS and EF-hand domain 94.8 0.24 8.2E-06 42.2 10.9 66 176-242 76-145 (199)
214 1ega_A Protein (GTP-binding pr 94.8 0.16 5.3E-06 47.0 10.2 65 175-242 54-128 (301)
215 2iyv_A Shikimate kinase, SK; t 94.8 0.012 4E-07 50.1 2.3 35 68-108 1-35 (184)
216 2r2a_A Uncharacterized protein 94.7 0.02 7E-07 49.6 3.8 40 67-107 3-48 (199)
217 3crm_A TRNA delta(2)-isopenten 94.7 0.025 8.4E-07 52.9 4.5 37 67-109 3-39 (323)
218 3c5c_A RAS-like protein 12; GD 94.7 0.39 1.3E-05 40.5 11.9 85 176-266 68-159 (187)
219 2gf0_A GTP-binding protein DI- 94.7 0.18 6.2E-06 42.8 9.9 67 176-243 55-127 (199)
220 3c8u_A Fructokinase; YP_612366 94.7 0.046 1.6E-06 47.5 6.0 41 68-109 21-61 (208)
221 2kjq_A DNAA-related protein; s 94.7 0.027 9.2E-07 46.3 4.2 38 69-107 36-73 (149)
222 2j69_A Bacterial dynamin-like 94.7 0.097 3.3E-06 54.4 9.4 65 177-243 174-243 (695)
223 1ly1_A Polynucleotide kinase; 94.7 0.031 1.1E-06 47.0 4.8 35 69-108 2-36 (181)
224 2bme_A RAB4A, RAS-related prot 94.7 0.16 5.4E-06 42.6 9.3 66 177-243 59-128 (186)
225 1nn5_A Similar to deoxythymidy 94.7 0.043 1.5E-06 47.6 5.8 36 69-105 9-44 (215)
226 3lxx_A GTPase IMAP family memb 94.6 0.18 6.2E-06 44.6 10.0 21 70-91 30-50 (239)
227 3lxw_A GTPase IMAP family memb 94.6 0.35 1.2E-05 43.2 11.8 67 175-243 68-152 (247)
228 2hjg_A GTP-binding protein ENG 94.6 0.063 2.2E-06 52.5 7.3 66 175-242 49-123 (436)
229 4dhe_A Probable GTP-binding pr 94.5 0.15 5E-06 44.4 9.0 66 175-242 77-156 (223)
230 1mky_A Probable GTP-binding pr 94.5 0.23 8E-06 48.5 11.2 65 175-241 47-121 (439)
231 2il1_A RAB12; G-protein, GDP, 94.5 0.14 4.7E-06 43.6 8.5 67 176-243 74-144 (192)
232 3cmw_A Protein RECA, recombina 94.5 0.049 1.7E-06 61.6 6.9 41 69-110 383-423 (1706)
233 3reg_A RHO-like small GTPase; 94.5 0.32 1.1E-05 41.2 10.8 89 176-267 70-162 (194)
234 2axn_A 6-phosphofructo-2-kinas 94.5 0.043 1.5E-06 55.0 5.9 39 70-108 35-73 (520)
235 1f6b_A SAR1; gtpases, N-termin 94.4 0.26 9E-06 42.1 10.2 67 175-242 67-138 (198)
236 2wwf_A Thymidilate kinase, put 94.4 0.053 1.8E-06 47.0 5.7 36 69-105 10-45 (212)
237 1jjv_A Dephospho-COA kinase; P 94.4 0.03 1E-06 48.5 4.1 34 68-108 1-34 (206)
238 2if2_A Dephospho-COA kinase; a 94.3 0.022 7.6E-07 49.2 3.1 33 69-108 1-33 (204)
239 3d3q_A TRNA delta(2)-isopenten 94.3 0.037 1.3E-06 52.1 4.7 34 70-109 8-41 (340)
240 3q3j_B RHO-related GTP-binding 94.3 0.84 2.9E-05 39.4 13.3 68 175-243 73-144 (214)
241 1vg8_A RAS-related protein RAB 94.3 0.23 8E-06 42.4 9.6 68 175-243 55-130 (207)
242 3tqc_A Pantothenate kinase; bi 94.2 0.059 2E-06 50.4 5.8 43 67-110 90-134 (321)
243 2ze6_A Isopentenyl transferase 94.2 0.038 1.3E-06 49.8 4.4 34 69-108 1-34 (253)
244 3avx_A Elongation factor TS, e 94.2 0.1 3.4E-06 56.8 8.1 68 175-243 357-425 (1289)
245 1v5w_A DMC1, meiotic recombina 94.1 0.046 1.6E-06 51.7 5.0 39 69-108 122-166 (343)
246 2plr_A DTMP kinase, probable t 94.1 0.057 1.9E-06 46.7 5.3 33 70-104 5-37 (213)
247 1m8p_A Sulfate adenylyltransfe 94.1 0.046 1.6E-06 55.4 5.2 40 68-108 395-435 (573)
248 1qf9_A UMP/CMP kinase, protein 94.1 0.042 1.4E-06 46.7 4.3 34 68-107 5-38 (194)
249 2z43_A DNA repair and recombin 94.1 0.033 1.1E-06 52.3 3.8 40 69-109 107-152 (324)
250 1kag_A SKI, shikimate kinase I 94.0 0.026 8.8E-07 47.3 2.8 35 68-108 3-37 (173)
251 1sq5_A Pantothenate kinase; P- 94.0 0.058 2E-06 50.2 5.4 43 67-110 78-122 (308)
252 2qgz_A Helicase loader, putati 94.0 0.055 1.9E-06 50.3 5.2 38 69-107 152-190 (308)
253 3cmu_A Protein RECA, recombina 94.0 0.077 2.6E-06 60.9 7.2 41 69-110 383-423 (2050)
254 1uf9_A TT1252 protein; P-loop, 93.9 0.029 9.8E-07 48.3 3.0 36 66-108 5-40 (203)
255 3cbq_A GTP-binding protein REM 93.9 0.68 2.3E-05 39.3 11.9 67 176-243 71-143 (195)
256 1nlf_A Regulatory protein REPA 93.9 0.06 2.1E-06 49.1 5.3 39 69-108 30-78 (279)
257 2ged_A SR-beta, signal recogni 93.9 0.21 7.2E-06 42.2 8.5 21 70-91 49-69 (193)
258 1x6v_B Bifunctional 3'-phospho 93.9 0.057 1.9E-06 55.1 5.4 42 68-110 51-92 (630)
259 1ukz_A Uridylate kinase; trans 93.9 0.047 1.6E-06 47.1 4.3 36 66-107 12-47 (203)
260 4dkx_A RAS-related protein RAB 93.9 0.6 2.1E-05 40.7 11.5 88 175-267 60-151 (216)
261 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.82 2.8E-05 37.6 12.0 67 176-243 55-129 (177)
262 3io5_A Recombination and repai 93.8 0.048 1.7E-06 50.6 4.4 37 71-108 30-68 (333)
263 1odf_A YGR205W, hypothetical 3 93.8 0.041 1.4E-06 50.8 3.9 41 68-109 30-73 (290)
264 2v54_A DTMP kinase, thymidylat 93.8 0.046 1.6E-06 47.1 4.0 35 69-106 4-38 (204)
265 3vaa_A Shikimate kinase, SK; s 93.8 0.042 1.4E-06 47.4 3.7 34 69-108 25-58 (199)
266 1n0w_A DNA repair protein RAD5 93.8 0.052 1.8E-06 48.1 4.4 39 69-108 24-68 (243)
267 3asz_A Uridine kinase; cytidin 93.7 0.067 2.3E-06 46.4 5.0 38 69-110 6-43 (211)
268 1gtv_A TMK, thymidylate kinase 93.7 0.02 7E-07 49.8 1.6 35 71-106 2-36 (214)
269 3llu_A RAS-related GTP-binding 93.7 0.82 2.8E-05 38.7 11.9 67 175-242 67-141 (196)
270 4hlc_A DTMP kinase, thymidylat 93.7 0.072 2.5E-06 46.3 5.0 36 68-105 1-36 (205)
271 1zo1_I IF2, translation initia 93.6 0.17 5.7E-06 50.3 8.2 67 176-243 50-116 (501)
272 3cb4_D GTP-binding protein LEP 93.6 0.18 6E-06 51.4 8.5 84 176-266 70-153 (599)
273 3kb2_A SPBC2 prophage-derived 93.5 0.051 1.8E-06 45.2 3.8 33 70-108 2-34 (173)
274 2rhm_A Putative kinase; P-loop 93.5 0.053 1.8E-06 46.1 3.9 33 69-107 5-37 (193)
275 1knq_A Gluconate kinase; ALFA/ 93.5 0.087 3E-06 44.1 5.2 35 69-109 8-42 (175)
276 1jbk_A CLPB protein; beta barr 93.5 0.077 2.6E-06 44.6 4.8 36 70-106 44-86 (195)
277 2bwj_A Adenylate kinase 5; pho 93.4 0.039 1.3E-06 47.2 2.9 34 69-108 12-45 (199)
278 3ake_A Cytidylate kinase; CMP 93.4 0.043 1.5E-06 47.4 3.2 34 69-108 2-35 (208)
279 1tev_A UMP-CMP kinase; ploop, 93.4 0.065 2.2E-06 45.6 4.2 32 70-107 4-35 (196)
280 2qt1_A Nicotinamide riboside k 93.3 0.045 1.5E-06 47.4 3.2 37 68-109 20-56 (207)
281 2j9r_A Thymidine kinase; TK1, 93.3 0.14 4.9E-06 44.6 6.3 36 69-105 28-63 (214)
282 1n0u_A EF-2, elongation factor 93.3 0.24 8.1E-06 52.7 9.2 68 175-243 96-163 (842)
283 2g3y_A GTP-binding protein GEM 93.3 1.1 3.6E-05 38.9 12.0 67 176-243 86-158 (211)
284 1kk1_A EIF2gamma; initiation o 93.2 0.2 6.7E-06 48.5 7.9 66 177-242 83-149 (410)
285 1jwy_B Dynamin A GTPase domain 93.2 0.19 6.4E-06 46.5 7.4 68 175-243 129-211 (315)
286 3t34_A Dynamin-related protein 93.2 0.77 2.6E-05 43.4 11.8 68 176-244 135-217 (360)
287 4edh_A DTMP kinase, thymidylat 93.1 0.12 4E-06 45.2 5.6 35 70-105 7-41 (213)
288 2qu8_A Putative nucleolar GTP- 93.1 0.86 2.9E-05 39.7 11.3 68 175-243 74-155 (228)
289 2grj_A Dephospho-COA kinase; T 93.1 0.078 2.7E-06 45.6 4.2 34 70-109 13-46 (192)
290 2f6r_A COA synthase, bifunctio 93.0 0.08 2.7E-06 48.5 4.5 36 66-108 72-107 (281)
291 1wb1_A Translation elongation 93.0 0.22 7.6E-06 49.3 8.0 66 175-242 71-137 (482)
292 1gwn_A RHO-related GTP-binding 93.0 1.5 5E-05 37.6 12.5 68 176-243 75-145 (205)
293 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.33 1.1E-05 40.4 8.1 67 176-243 52-122 (186)
294 1g8f_A Sulfate adenylyltransfe 93.0 0.074 2.5E-06 52.9 4.4 39 69-108 395-435 (511)
295 2cdn_A Adenylate kinase; phosp 92.9 0.084 2.9E-06 45.4 4.2 35 67-107 18-52 (201)
296 2c95_A Adenylate kinase 1; tra 92.9 0.081 2.8E-06 45.1 4.1 34 69-108 9-42 (196)
297 1gvn_B Zeta; postsegregational 92.8 0.069 2.4E-06 49.1 3.7 37 70-109 33-69 (287)
298 2p5t_B PEZT; postsegregational 92.8 0.064 2.2E-06 48.3 3.4 38 69-110 32-69 (253)
299 4gzl_A RAS-related C3 botulinu 92.8 0.28 9.7E-06 42.1 7.5 68 175-243 76-147 (204)
300 2p65_A Hypothetical protein PF 92.8 0.08 2.7E-06 44.4 3.8 26 70-96 44-69 (187)
301 3dpu_A RAB family protein; roc 92.7 0.67 2.3E-05 46.4 11.2 66 175-243 96-163 (535)
302 3izy_P Translation initiation 92.7 0.25 8.7E-06 49.4 7.9 67 176-243 51-117 (537)
303 3e2i_A Thymidine kinase; Zn-bi 92.6 0.25 8.6E-06 43.1 6.8 37 69-106 28-64 (219)
304 3ld9_A DTMP kinase, thymidylat 92.6 0.12 4.2E-06 45.5 4.9 42 68-110 20-62 (223)
305 3mca_A HBS1, elongation factor 92.6 0.043 1.5E-06 56.0 2.2 69 175-243 253-328 (592)
306 1zuh_A Shikimate kinase; alpha 92.6 0.09 3.1E-06 43.7 3.9 35 68-108 6-40 (168)
307 1m7b_A RND3/RHOE small GTP-bin 92.6 1.1 3.8E-05 37.4 10.9 68 175-243 53-124 (184)
308 2ehv_A Hypothetical protein PH 92.5 0.14 4.7E-06 45.5 5.3 39 69-108 30-69 (251)
309 2vhj_A Ntpase P4, P4; non- hyd 92.5 0.051 1.7E-06 50.6 2.4 34 70-107 124-157 (331)
310 3e1s_A Exodeoxyribonuclease V, 92.5 0.13 4.4E-06 52.2 5.5 33 72-104 206-238 (574)
311 2pt5_A Shikimate kinase, SK; a 92.5 0.072 2.5E-06 44.2 3.1 32 71-108 2-33 (168)
312 3gj0_A GTP-binding nuclear pro 92.4 0.38 1.3E-05 41.7 8.0 69 175-244 62-133 (221)
313 2atx_A Small GTP binding prote 92.4 0.85 2.9E-05 38.4 10.0 67 176-243 65-135 (194)
314 4eun_A Thermoresistant glucoki 92.4 0.13 4.5E-06 44.2 4.8 34 69-108 29-62 (200)
315 1y63_A LMAJ004144AAA protein; 92.3 0.1 3.5E-06 44.3 3.9 35 69-108 10-44 (184)
316 2jeo_A Uridine-cytidine kinase 92.2 0.15 5.2E-06 45.4 5.1 39 69-108 25-68 (245)
317 1ak2_A Adenylate kinase isoenz 92.2 0.11 3.8E-06 45.9 4.2 37 65-107 12-48 (233)
318 3be4_A Adenylate kinase; malar 92.2 0.083 2.8E-06 46.2 3.3 33 69-107 5-37 (217)
319 4eaq_A DTMP kinase, thymidylat 92.2 0.16 5.4E-06 44.9 5.1 35 68-104 25-59 (229)
320 1l8q_A Chromosomal replication 92.1 0.14 4.7E-06 47.8 4.9 37 70-107 38-74 (324)
321 1aky_A Adenylate kinase; ATP:A 92.1 0.11 3.9E-06 45.3 4.1 33 69-107 4-36 (220)
322 3bwd_D RAC-like GTP-binding pr 92.0 0.92 3.1E-05 37.5 9.7 67 176-243 55-125 (182)
323 3iij_A Coilin-interacting nucl 91.9 0.11 3.9E-06 43.6 3.8 32 70-107 12-43 (180)
324 2i1q_A DNA repair and recombin 91.9 0.087 3E-06 49.2 3.3 40 69-109 98-153 (322)
325 3r7w_A Gtpase1, GTP-binding pr 91.9 0.19 6.5E-06 46.6 5.6 68 175-243 50-128 (307)
326 1nrj_B SR-beta, signal recogni 91.9 0.25 8.6E-06 42.7 6.1 22 70-92 13-34 (218)
327 3hjn_A DTMP kinase, thymidylat 91.9 0.22 7.5E-06 42.9 5.6 33 72-105 3-35 (197)
328 2qpt_A EH domain-containing pr 91.9 0.22 7.5E-06 50.2 6.3 65 178-243 155-231 (550)
329 3lw7_A Adenylate kinase relate 91.8 0.09 3.1E-06 43.6 2.9 27 71-102 3-29 (179)
330 3cmw_A Protein RECA, recombina 91.7 0.15 5.1E-06 57.7 5.3 39 70-109 733-771 (1706)
331 4djt_A GTP-binding nuclear pro 91.7 0.39 1.3E-05 41.5 7.1 66 177-243 61-130 (218)
332 3lv8_A DTMP kinase, thymidylat 91.7 0.18 6.1E-06 44.9 4.9 34 70-104 28-62 (236)
333 2vli_A Antibiotic resistance p 91.6 0.071 2.4E-06 44.9 2.1 30 69-102 5-34 (183)
334 3do6_A Formate--tetrahydrofola 91.5 0.15 5.1E-06 49.4 4.3 48 68-118 42-92 (543)
335 3exa_A TRNA delta(2)-isopenten 91.5 0.16 5.5E-06 47.1 4.4 34 71-109 4-37 (322)
336 1ltq_A Polynucleotide kinase; 91.4 0.14 4.9E-06 47.0 4.2 35 69-108 2-36 (301)
337 3jvv_A Twitching mobility prot 91.4 1.8 6.2E-05 40.8 11.8 36 69-105 123-159 (356)
338 1zp6_A Hypothetical protein AT 91.4 0.14 4.7E-06 43.5 3.7 34 70-107 10-43 (191)
339 3cm0_A Adenylate kinase; ATP-b 91.3 0.16 5.4E-06 42.9 4.1 33 69-107 4-36 (186)
340 4b3f_X DNA-binding protein smu 91.3 0.2 6.9E-06 51.6 5.5 34 72-105 207-240 (646)
341 3aez_A Pantothenate kinase; tr 91.3 0.27 9.2E-06 45.7 5.9 42 67-109 88-131 (312)
342 3v9p_A DTMP kinase, thymidylat 91.3 0.17 5.7E-06 44.8 4.2 35 70-105 26-64 (227)
343 3def_A T7I23.11 protein; chlor 91.2 0.31 1.1E-05 43.9 6.1 21 70-91 37-57 (262)
344 3a8t_A Adenylate isopentenyltr 91.2 0.15 5.1E-06 47.8 4.0 34 70-109 41-74 (339)
345 3n70_A Transport activator; si 91.2 0.1 3.6E-06 42.3 2.6 35 72-108 27-61 (145)
346 4dcu_A GTP-binding protein ENG 91.1 1.4 4.7E-05 43.2 11.1 69 175-244 241-320 (456)
347 3ch4_B Pmkase, phosphomevalona 91.1 0.19 6.6E-06 43.4 4.3 29 65-94 7-35 (202)
348 2qby_B CDC6 homolog 3, cell di 91.1 0.19 6.6E-06 47.7 4.8 39 69-108 45-91 (384)
349 3upu_A ATP-dependent DNA helic 91.0 0.24 8.2E-06 48.7 5.5 33 72-104 47-80 (459)
350 3foz_A TRNA delta(2)-isopenten 90.9 0.31 1.1E-05 45.0 5.8 36 68-109 9-44 (316)
351 2orv_A Thymidine kinase; TP4A 90.9 0.33 1.1E-05 42.8 5.6 39 67-106 17-55 (234)
352 4fcw_A Chaperone protein CLPB; 90.9 0.25 8.7E-06 45.4 5.3 40 70-110 48-87 (311)
353 3t15_A Ribulose bisphosphate c 90.8 0.2 6.8E-06 46.1 4.5 33 70-106 37-69 (293)
354 1cke_A CK, MSSA, protein (cyti 90.8 0.19 6.6E-06 43.9 4.2 32 70-107 6-37 (227)
355 4tmk_A Protein (thymidylate ki 90.8 0.26 8.7E-06 43.1 4.9 34 70-104 4-38 (213)
356 1vht_A Dephospho-COA kinase; s 90.5 0.23 7.8E-06 43.2 4.4 32 70-108 5-36 (218)
357 4a74_A DNA repair and recombin 90.5 0.22 7.4E-06 43.5 4.2 39 69-108 25-69 (231)
358 3nva_A CTP synthase; rossman f 90.5 0.5 1.7E-05 46.7 7.1 48 68-115 2-50 (535)
359 2jaq_A Deoxyguanosine kinase; 90.4 0.2 6.8E-06 42.8 3.9 24 71-95 2-25 (205)
360 1zak_A Adenylate kinase; ATP:A 90.4 0.16 5.4E-06 44.5 3.2 25 69-94 5-29 (222)
361 1w4r_A Thymidine kinase; type 90.4 0.41 1.4E-05 41.0 5.7 44 63-107 14-57 (195)
362 3lda_A DNA repair protein RAD5 90.4 0.18 6.3E-06 48.6 3.9 39 69-108 178-222 (400)
363 2bbw_A Adenylate kinase 4, AK4 90.3 0.21 7.3E-06 44.4 4.1 26 68-94 26-51 (246)
364 2a5y_B CED-4; apoptosis; HET: 90.3 0.18 6.2E-06 50.8 4.0 24 68-92 151-174 (549)
365 3tlx_A Adenylate kinase 2; str 90.3 0.27 9.3E-06 43.8 4.7 33 69-107 29-61 (243)
366 2chg_A Replication factor C sm 90.3 0.13 4.6E-06 44.2 2.6 34 72-106 41-74 (226)
367 2qby_A CDC6 homolog 1, cell di 90.3 0.21 7.1E-06 47.3 4.2 39 69-108 45-86 (386)
368 2l6p_A PHAC1, PHAC2 and PHAD g 90.2 0.07 2.4E-06 42.3 0.7 24 389-413 15-38 (124)
369 3syl_A Protein CBBX; photosynt 90.2 0.34 1.2E-05 44.5 5.5 36 69-105 67-106 (309)
370 3cmu_A Protein RECA, recombina 90.2 0.25 8.7E-06 56.7 5.4 39 69-108 1427-1465(2050)
371 2bdt_A BH3686; alpha-beta prot 90.1 0.19 6.6E-06 42.6 3.5 23 69-92 2-24 (189)
372 1zd8_A GTP:AMP phosphotransfer 90.1 0.15 5.2E-06 44.8 2.9 33 69-107 7-39 (227)
373 1zun_B Sulfate adenylate trans 90.0 0.64 2.2E-05 45.2 7.6 68 175-243 102-170 (434)
374 1e4v_A Adenylate kinase; trans 89.9 0.19 6.5E-06 43.7 3.3 31 71-107 2-32 (214)
375 2j0v_A RAC-like GTP-binding pr 89.9 2.1 7.1E-05 36.5 10.1 68 175-243 55-126 (212)
376 1pzn_A RAD51, DNA repair and r 89.7 0.25 8.4E-06 46.8 4.2 39 69-108 131-175 (349)
377 2vo1_A CTP synthase 1; pyrimid 89.6 0.83 2.8E-05 40.8 7.0 49 68-116 22-71 (295)
378 3umf_A Adenylate kinase; rossm 89.5 0.32 1.1E-05 42.6 4.4 26 68-94 28-53 (217)
379 1f60_A Elongation factor EEF1A 89.1 1.1 3.7E-05 44.0 8.4 69 175-243 83-158 (458)
380 2xb4_A Adenylate kinase; ATP-b 89.1 0.26 9E-06 43.1 3.6 31 71-107 2-32 (223)
381 1w36_D RECD, exodeoxyribonucle 89.0 0.38 1.3E-05 49.1 5.2 34 71-104 165-202 (608)
382 3tau_A Guanylate kinase, GMP k 88.8 0.31 1E-05 42.2 3.8 27 67-94 6-32 (208)
383 1kgd_A CASK, peripheral plasma 88.8 0.28 9.6E-06 41.3 3.4 25 69-94 5-29 (180)
384 3r20_A Cytidylate kinase; stru 88.7 0.33 1.1E-05 43.0 4.0 34 69-108 9-42 (233)
385 3fb4_A Adenylate kinase; psych 88.7 0.31 1.1E-05 42.2 3.8 31 71-107 2-32 (216)
386 3cr8_A Sulfate adenylyltranfer 88.6 0.32 1.1E-05 49.0 4.2 39 69-108 369-408 (552)
387 2z4s_A Chromosomal replication 88.6 0.34 1.2E-05 47.3 4.4 37 70-107 131-169 (440)
388 1bif_A 6-phosphofructo-2-kinas 88.5 0.51 1.7E-05 46.5 5.6 39 70-108 39-77 (469)
389 1tf7_A KAIC; homohexamer, hexa 88.4 0.5 1.7E-05 47.3 5.6 38 69-107 281-318 (525)
390 3ney_A 55 kDa erythrocyte memb 88.4 0.32 1.1E-05 41.9 3.6 32 63-94 12-43 (197)
391 4e22_A Cytidylate kinase; P-lo 88.4 0.34 1.2E-05 43.4 3.9 29 65-94 23-51 (252)
392 4ag6_A VIRB4 ATPase, type IV s 88.3 0.51 1.7E-05 45.2 5.4 35 72-107 38-72 (392)
393 2v1u_A Cell division control p 88.3 0.32 1.1E-05 46.1 3.9 39 69-108 44-88 (387)
394 1fnn_A CDC6P, cell division co 88.3 0.51 1.7E-05 44.7 5.3 37 71-108 46-83 (389)
395 2bjv_A PSP operon transcriptio 88.2 0.3 1E-05 43.9 3.5 38 71-109 31-68 (265)
396 2fu5_C RAS-related protein RAB 88.2 4.6 0.00016 33.2 10.8 86 176-266 56-145 (183)
397 1w78_A FOLC bifunctional prote 87.9 0.69 2.3E-05 44.8 6.0 35 67-104 47-81 (422)
398 1w5s_A Origin recognition comp 87.8 0.43 1.5E-05 45.7 4.5 33 76-108 58-96 (412)
399 3orf_A Dihydropteridine reduct 87.8 0.4 1.4E-05 42.8 4.0 42 63-109 16-57 (251)
400 2i3b_A HCR-ntpase, human cance 87.5 0.46 1.6E-05 40.6 4.0 28 70-98 2-29 (189)
401 3sr0_A Adenylate kinase; phosp 87.3 0.44 1.5E-05 41.3 3.8 23 71-94 2-24 (206)
402 3dl0_A Adenylate kinase; phosp 87.2 0.34 1.2E-05 42.0 3.1 31 71-107 2-32 (216)
403 2qor_A Guanylate kinase; phosp 87.2 0.3 1E-05 42.0 2.7 24 70-94 13-36 (204)
404 3eag_A UDP-N-acetylmuramate:L- 87.1 0.63 2.1E-05 43.4 5.0 33 68-103 107-139 (326)
405 1jbw_A Folylpolyglutamate synt 87.0 0.69 2.4E-05 44.9 5.5 34 68-104 38-71 (428)
406 2e87_A Hypothetical protein PH 87.0 2.5 8.7E-05 39.7 9.3 66 176-242 213-292 (357)
407 2qz4_A Paraplegin; AAA+, SPG7, 86.9 0.86 2.9E-05 40.5 5.7 34 70-107 40-73 (262)
408 2gk6_A Regulator of nonsense t 86.7 0.64 2.2E-05 47.6 5.3 33 72-104 197-230 (624)
409 2eyu_A Twitching motility prot 86.6 0.92 3.2E-05 40.8 5.7 39 68-107 24-63 (261)
410 1ye8_A Protein THEP1, hypothet 86.3 0.56 1.9E-05 39.5 3.9 24 71-95 2-25 (178)
411 3j2k_7 ERF3, eukaryotic polype 86.2 1 3.6E-05 43.8 6.3 68 175-242 93-167 (439)
412 1lnz_A SPO0B-associated GTP-bi 86.1 0.89 3E-05 42.7 5.5 65 177-242 206-286 (342)
413 3gee_A MNME, tRNA modification 86.1 1.6 5.3E-05 43.1 7.5 69 175-244 279-357 (476)
414 1nij_A Hypothetical protein YJ 86.1 0.38 1.3E-05 44.8 2.9 37 69-108 4-40 (318)
415 1ofh_A ATP-dependent HSL prote 86.1 0.76 2.6E-05 41.9 5.0 35 70-108 51-85 (310)
416 2j41_A Guanylate kinase; GMP, 86.1 0.52 1.8E-05 40.3 3.6 25 69-94 6-30 (207)
417 4ehx_A Tetraacyldisaccharide 4 86.0 0.73 2.5E-05 42.8 4.8 37 69-107 36-73 (315)
418 3geh_A MNME, tRNA modification 85.9 1.4 4.8E-05 43.2 7.0 66 175-243 270-343 (462)
419 3tr0_A Guanylate kinase, GMP k 85.8 0.52 1.8E-05 40.2 3.5 25 69-94 7-31 (205)
420 3nrs_A Dihydrofolate:folylpoly 85.8 1.1 3.6E-05 43.8 6.1 35 67-104 50-84 (437)
421 4i1u_A Dephospho-COA kinase; s 85.7 0.7 2.4E-05 40.1 4.2 34 68-108 8-41 (210)
422 3nwj_A ATSK2; P loop, shikimat 85.6 0.52 1.8E-05 42.2 3.5 34 69-108 48-81 (250)
423 1e8c_A UDP-N-acetylmuramoylala 85.5 0.97 3.3E-05 44.8 5.7 34 68-104 107-140 (498)
424 2wjy_A Regulator of nonsense t 85.5 0.79 2.7E-05 48.3 5.3 33 72-104 373-406 (800)
425 1z6t_A APAF-1, apoptotic prote 85.4 0.56 1.9E-05 47.5 4.0 41 68-109 146-190 (591)
426 2ewv_A Twitching motility prot 85.3 1 3.5E-05 42.9 5.5 38 68-106 135-173 (372)
427 3hdt_A Putative kinase; struct 85.1 0.72 2.5E-05 40.5 4.0 34 69-108 14-47 (223)
428 1lv7_A FTSH; alpha/beta domain 84.8 1.1 3.8E-05 39.8 5.4 32 70-105 46-77 (257)
429 2h92_A Cytidylate kinase; ross 84.7 0.38 1.3E-05 41.7 2.1 32 71-108 5-36 (219)
430 1q3t_A Cytidylate kinase; nucl 84.7 0.77 2.6E-05 40.4 4.1 35 68-108 15-49 (236)
431 2wtz_A UDP-N-acetylmuramoyl-L- 84.6 1.1 3.8E-05 44.8 5.7 34 68-104 145-178 (535)
432 3te6_A Regulatory protein SIR3 84.5 1 3.4E-05 41.9 4.9 28 69-97 45-72 (318)
433 1um8_A ATP-dependent CLP prote 84.4 0.9 3.1E-05 43.1 4.7 35 70-108 73-107 (376)
434 3ged_A Short-chain dehydrogena 84.2 0.71 2.4E-05 41.2 3.7 36 68-108 1-36 (247)
435 1vt4_I APAF-1 related killer D 84.1 0.92 3.1E-05 49.0 5.0 39 69-108 150-191 (1221)
436 2qmh_A HPR kinase/phosphorylas 84.0 0.65 2.2E-05 40.0 3.1 32 69-107 34-65 (205)
437 1o5z_A Folylpolyglutamate synt 84.0 0.96 3.3E-05 44.1 4.9 34 68-104 51-84 (442)
438 1sxj_A Activator 1 95 kDa subu 83.9 0.86 2.9E-05 45.5 4.5 34 70-107 78-111 (516)
439 1dek_A Deoxynucleoside monopho 83.8 0.76 2.6E-05 40.9 3.7 29 69-101 1-29 (241)
440 1d2n_A N-ethylmaleimide-sensit 83.7 1.2 4.1E-05 40.0 5.1 34 68-105 63-96 (272)
441 1c9k_A COBU, adenosylcobinamid 83.6 0.59 2E-05 39.5 2.7 32 72-108 2-33 (180)
442 3eph_A TRNA isopentenyltransfe 83.6 1.2 3.9E-05 42.8 5.0 33 70-108 3-35 (409)
443 3a00_A Guanylate kinase, GMP k 83.6 0.54 1.9E-05 39.7 2.5 25 70-95 2-26 (186)
444 3lk7_A UDP-N-acetylmuramoylala 83.5 1.3 4.4E-05 43.3 5.6 32 69-103 112-143 (451)
445 2vos_A Folylpolyglutamate synt 83.5 1.3 4.4E-05 43.8 5.6 34 68-104 63-96 (487)
446 2ocp_A DGK, deoxyguanosine kin 83.3 0.68 2.3E-05 40.9 3.2 26 69-95 2-27 (241)
447 3d8b_A Fidgetin-like protein 1 83.1 1.3 4.4E-05 41.8 5.2 36 67-106 115-150 (357)
448 2ehd_A Oxidoreductase, oxidore 83.0 0.79 2.7E-05 40.1 3.5 38 66-108 2-39 (234)
449 3b9p_A CG5977-PA, isoform A; A 83.0 1.3 4.6E-05 40.2 5.2 35 68-106 53-87 (297)
450 1njg_A DNA polymerase III subu 83.0 0.92 3.2E-05 39.3 3.9 27 70-97 46-72 (250)
451 3h4m_A Proteasome-activating n 83.0 1.3 4.3E-05 40.1 4.9 33 70-106 52-84 (285)
452 3tqf_A HPR(Ser) kinase; transf 82.9 1.2 4E-05 37.4 4.2 27 69-100 16-42 (181)
453 1lvg_A Guanylate kinase, GMP k 82.3 0.84 2.9E-05 39.0 3.3 25 70-95 5-29 (198)
454 2dtx_A Glucose 1-dehydrogenase 82.3 4 0.00014 36.4 8.0 36 69-109 8-43 (264)
455 2fna_A Conserved hypothetical 82.3 1.3 4.4E-05 41.1 4.9 35 70-108 31-65 (357)
456 3izq_1 HBS1P, elongation facto 82.2 2.7 9.3E-05 42.8 7.5 69 175-243 243-318 (611)
457 2wkq_A NPH1-1, RAS-related C3 82.2 3.6 0.00012 37.7 7.9 67 176-243 202-272 (332)
458 1e9r_A Conjugal transfer prote 82.2 1.3 4.5E-05 42.9 5.0 36 71-107 55-90 (437)
459 2xzl_A ATP-dependent helicase 81.8 1.2 4.1E-05 47.0 4.8 34 72-105 377-411 (802)
460 3fdi_A Uncharacterized protein 81.8 0.69 2.4E-05 39.8 2.5 33 70-108 7-39 (201)
461 1xwi_A SKD1 protein; VPS4B, AA 81.8 1.5 5.1E-05 40.7 5.0 35 69-106 45-79 (322)
462 2vp4_A Deoxynucleoside kinase; 81.7 0.88 3E-05 39.9 3.2 35 68-107 19-53 (230)
463 3zvl_A Bifunctional polynucleo 81.7 0.55 1.9E-05 45.5 2.0 33 71-108 259-291 (416)
464 1tue_A Replication protein E1; 81.6 0.8 2.8E-05 39.6 2.8 23 71-94 60-82 (212)
465 3hws_A ATP-dependent CLP prote 81.6 1.3 4.5E-05 41.7 4.7 34 70-107 52-85 (363)
466 1htw_A HI0065; nucleotide-bind 81.5 1.2 3.9E-05 36.8 3.7 29 69-98 33-61 (158)
467 2x5o_A UDP-N-acetylmuramoylala 81.2 1.7 5.9E-05 42.2 5.5 33 69-104 104-136 (439)
468 3dii_A Short-chain dehydrogena 81.2 1.1 3.7E-05 39.8 3.7 36 68-108 1-36 (247)
469 2yc2_C IFT27, small RAB-relate 81.2 6.2 0.00021 33.1 8.5 86 176-266 72-165 (208)
470 3ic5_A Putative saccharopine d 81.2 1 3.6E-05 34.2 3.2 36 67-108 3-39 (118)
471 3r6d_A NAD-dependent epimerase 81.1 1.2 4.2E-05 38.4 3.9 38 67-109 3-41 (221)
472 3pxg_A Negative regulator of g 81.0 0.86 2.9E-05 44.8 3.2 25 71-96 203-227 (468)
473 2npi_A Protein CLP1; CLP1-PCF1 81.0 0.7 2.4E-05 45.4 2.5 42 68-110 137-179 (460)
474 3cf0_A Transitional endoplasmi 80.9 1.3 4.6E-05 40.5 4.3 33 69-105 49-81 (301)
475 3sfz_A APAF-1, apoptotic pepti 80.7 1.2 3.9E-05 49.3 4.4 41 67-108 145-189 (1249)
476 1ojl_A Transcriptional regulat 80.4 0.78 2.7E-05 42.3 2.5 37 71-108 27-63 (304)
477 1p5z_B DCK, deoxycytidine kina 80.4 0.42 1.4E-05 42.9 0.7 27 67-94 22-48 (263)
478 3u61_B DNA polymerase accessor 79.9 1.5 5.2E-05 40.4 4.4 32 72-106 50-81 (324)
479 2pt7_A CAG-ALFA; ATPase, prote 79.9 3.9 0.00013 38.1 7.2 35 69-105 171-205 (330)
480 2v9p_A Replication protein E1; 79.7 1.6 5.3E-05 40.3 4.3 30 68-101 125-154 (305)
481 3eie_A Vacuolar protein sortin 79.6 2.3 8E-05 39.3 5.6 34 69-106 51-84 (322)
482 1znw_A Guanylate kinase, GMP k 79.3 1.2 4.3E-05 38.1 3.3 26 69-95 20-45 (207)
483 1p9r_A General secretion pathw 79.3 2.2 7.5E-05 41.2 5.4 39 68-107 166-204 (418)
484 3hn7_A UDP-N-acetylmuramate-L- 79.0 2 6.7E-05 42.9 5.1 34 68-104 121-154 (524)
485 4gp7_A Metallophosphoesterase; 79.0 1.2 4E-05 37.1 3.0 20 69-89 9-28 (171)
486 3bs4_A Uncharacterized protein 79.0 2.4 8.2E-05 38.0 5.2 39 70-109 22-60 (260)
487 1in4_A RUVB, holliday junction 78.8 1.4 4.7E-05 41.2 3.7 24 70-94 52-75 (334)
488 2qen_A Walker-type ATPase; unk 78.8 1.4 5E-05 40.7 3.9 33 70-108 32-64 (350)
489 3o2g_A Gamma-butyrobetaine dio 78.6 1.7 5.7E-05 41.6 4.3 28 330-358 73-100 (388)
490 1j6u_A UDP-N-acetylmuramate-al 78.5 2 6.7E-05 42.3 4.9 32 69-103 114-145 (469)
491 3guy_A Short-chain dehydrogena 78.4 1.3 4.3E-05 38.7 3.1 35 69-108 1-35 (230)
492 1qvr_A CLPB protein; coiled co 78.3 1.6 5.5E-05 46.4 4.4 33 74-106 195-234 (854)
493 2ekp_A 2-deoxy-D-gluconate 3-d 78.2 1.5 5.3E-05 38.4 3.7 36 68-108 1-36 (239)
494 1z6g_A Guanylate kinase; struc 78.2 1.2 4.1E-05 38.7 2.9 25 69-94 23-47 (218)
495 2f7s_A C25KG, RAS-related prot 78.1 8.8 0.0003 32.6 8.5 88 176-267 83-174 (217)
496 3p19_A BFPVVD8, putative blue 77.8 1.7 5.9E-05 39.0 3.9 36 68-108 15-50 (266)
497 1iqp_A RFCS; clamp loader, ext 77.6 0.92 3.1E-05 41.7 2.1 26 72-98 49-74 (327)
498 1fjh_A 3alpha-hydroxysteroid d 77.5 1.8 6.1E-05 38.3 3.9 35 69-108 1-35 (257)
499 1p3d_A UDP-N-acetylmuramate--a 77.5 2.8 9.7E-05 41.1 5.7 37 69-108 118-155 (475)
500 1sxj_C Activator 1 40 kDa subu 77.2 1.1 3.8E-05 41.8 2.6 36 72-108 49-84 (340)
No 1
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=9.4e-35 Score=275.47 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=176.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC-ccc---------ccCCCCCceeee
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLL---------EMNPEKRTIIPT 136 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~-~~~---------~~~~~~~~i~~~ 136 (423)
..+|||||+ |||||||||+|+|||.+||++|+||++||+|||++++..+++... ... ......+.+...
T Consensus 46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 357999998 799999999999999999999999999999999988766544321 110 000111223344
Q ss_pred ccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 014511 137 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 137 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
...++.++|++....... +........+..+.+...++.|||+++|||++.....+. .++.++|.+++|++|+..++.
T Consensus 125 ~~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-~al~aAd~viIvt~~e~~Al~ 202 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGTG-CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFDSIY 202 (314)
T ss_dssp CGGGCEEEECCCCCTTCS-CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHHHHH
T ss_pred cCCCeEEEeCCCCcccch-hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-hHHhhCCeEEEEeCCcHHHHH
Confidence 556899998875443322 233334445566555445689999999999987655442 335678999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC
Q 014511 217 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 217 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
++.++++.++.. +.++.|+|+|+... ....+++.+.++.++++.||.+..+++|...|+|+++++
T Consensus 203 ~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----------~~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pvv~~~ 271 (314)
T 3fwy_A 203 AMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMD 271 (314)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCc-----------hhHHHHHHHHhCCeEEEEecCchHHHHHHHcCCceEEEC
Confidence 999888877653 56678999998432 235788999999999999999999999999999999999
Q ss_pred CCCHHHHH---HHHHHHHHHHHHH
Q 014511 293 PCGEVANT---FQDLGVCVVQQCA 313 (423)
Q Consensus 293 p~s~~~~~---~~~la~~i~~~~~ 313 (423)
|+|+.+++ |++||++|+++..
T Consensus 272 P~S~~a~aa~~Y~~LA~eil~~~~ 295 (314)
T 3fwy_A 272 EDQDVLAARAEYIRLAESLWRGLD 295 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCChhhHHHHHHHHHHHHHHhCCC
Confidence 99987665 9999999987643
No 2
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=100.00 E-value=5.1e-34 Score=261.28 Aligned_cols=229 Identities=20% Similarity=0.286 Sum_probs=181.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc---cc----ccCCCCCceeeeccCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 140 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~---~~----~~~~~~~~i~~~~~~~ 140 (423)
|+|+|+|+|+||||||||+|+|||..|+++|+||++||+|++.++++.++|.... +. ......+.+.+...++
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 6799999999999999999999999999999999999999998888888886543 11 1111223344444589
Q ss_pred ceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 141 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 141 l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
++++|..... ....+.. ...+..+++.+. ..||||||||||+.+...... +..+|.+++|+.|+..++.++.+
T Consensus 81 l~~lp~~~~~-~~~~~~~---~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 81 VYVLPGAVDW-EHVLKAD---PRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EEEECCCCSH-HHHHHCC---GGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCcc-chhhhcC---HHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 9999943221 1111110 124556666654 789999999999998654444 55789999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHH
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 300 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~ 300 (423)
+++.+++.+.+..|+|+|++...... ...+++.+.++.++++.||++..+.++...|+|+.++.|+++++++
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 225 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRD--------IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKA 225 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTC--------CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHH
T ss_pred HHHHHHhCCCceEEEEEecCCcccch--------hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCCCHHHHH
Confidence 99999988888999999997543321 3467888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 014511 301 FQDLGVCVVQQ 311 (423)
Q Consensus 301 ~~~la~~i~~~ 311 (423)
|.+|+++|.++
T Consensus 226 ~~~la~~l~~~ 236 (237)
T 1g3q_A 226 FVKLAEEIEKL 236 (237)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 3
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=100.00 E-value=1.4e-34 Score=266.33 Aligned_cols=228 Identities=17% Similarity=0.237 Sum_probs=177.6
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCcccCCC-CCc--cccc----CCC----CCcee
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSP-ENR--LLEM----NPE----KRTII 134 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~~~~~~~~~~-~~~--~~~~----~~~----~~~i~ 134 (423)
+++|+|+|+|+||||||||+|+|||..||++ |+||++||+|+|.+++..+++. ... +... ... .+.+.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHh
Confidence 5789999999999999999999999999998 9999999999997788888742 221 1110 000 11233
Q ss_pred eeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 014511 135 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 214 (423)
Q Consensus 135 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s 214 (423)
....+|++++|++........+. ...++++++.+. +.||||||||||+.+.....+ +..+|.+++|+.|+..+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~~ 154 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIVNIE----PERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWV--LEHLDELCIVTTPSLQS 154 (245)
T ss_dssp EEEETTEEEECCCSSHHHHHHCC----HHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHH--GGGCSEEEEEECSSHHH
T ss_pred EecCCCeEEEcCCCChHhhhcCC----HHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHH--HHHCCEEEEEecCcHHH
Confidence 44568999999865433322222 234555665554 689999999999998655444 55789999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCch-hhhhcccCCCceEee
Q 014511 215 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TLSASGDSGMPEVAA 291 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~-~i~~a~~~g~pi~~~ 291 (423)
+..+.++++.+++.+ ...+++|+||+..... ...+++++.+|.++++.+|++. .+.++...|+|+.++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---------~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~~v~~~ 225 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---------ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKV 225 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---------SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---------CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCCCcccc
Confidence 999999999999877 5679999999753321 1247888999999999999996 899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 014511 292 DPCGEVANTFQDLGVCVVQ 310 (423)
Q Consensus 292 ~p~s~~~~~~~~la~~i~~ 310 (423)
.|+++++++|++|+++|.+
T Consensus 226 ~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 226 APKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp CTTSHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 4
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=100.00 E-value=5.7e-33 Score=258.28 Aligned_cols=227 Identities=39% Similarity=0.628 Sum_probs=176.6
Q ss_pred cccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeee--ccC
Q 014511 62 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT--EYL 139 (423)
Q Consensus 62 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ 139 (423)
.+++++|+++|+|+|+||||||||+|+|||.+|+++|+||++||+|+|++++..++|....... .....+.+. ..+
T Consensus 11 a~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~ 88 (262)
T 2ph1_A 11 KERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIA--VSAEGLEPVLTQKY 88 (262)
T ss_dssp HHHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCE--EETTEEECEECTTT
T ss_pred hhhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcccc--ccccCccccccCCC
Confidence 3567789999999999999999999999999999999999999999999888888886643210 011222222 457
Q ss_pred CceEEcCCCCCCc---ccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 014511 140 GVKLVSFGFSGQG---RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 140 ~l~~l~~~~~~~~---~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
|++++|++..... ...+.++.....++++++.+.++.||||||||||+.++..+....+..+|.+++|+.|+..++.
T Consensus 89 ~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~ 168 (262)
T 2ph1_A 89 GIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAV 168 (262)
T ss_dssp CCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHH
T ss_pred CeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHH
Confidence 8999997754321 1223445566788888887655789999999999998755544444468999999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCC--CceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEe
Q 014511 217 DVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 290 (423)
Q Consensus 217 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~ 290 (423)
++.++++.+++.+.+++|+|+||+..... ......+.....+++.+.+|.++++.||++..+.+|...|+|++.
T Consensus 169 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~ 244 (262)
T 2ph1_A 169 IVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEY 244 (262)
T ss_dssp HHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGC
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeec
Confidence 99999999999999999999999764321 112112344568899999999999999999999999999999853
No 5
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=100.00 E-value=8.8e-34 Score=263.29 Aligned_cols=231 Identities=16% Similarity=0.222 Sum_probs=178.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc--------ccCCCCCceee-ecc
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIP-TEY 138 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~-~~~ 138 (423)
|+++|+|+|+||||||||+|+|||.+|+++|+||++||+|++.+++..++|...... ......+.+.. ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 679999999999999999999999999999999999999998888988888754310 01111122222 245
Q ss_pred CCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccC-CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 014511 139 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
+|++++|++.... ...+. ...+.++++.+. . .||||||||||+.+...... +..+|.+++|++|+..++..
T Consensus 81 ~~l~~lp~~~~~~-~~~~~----~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~--l~~ad~vi~v~~~~~~s~~~ 152 (260)
T 3q9l_A 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRD 152 (260)
T ss_dssp TTEEEECCCSCCC-TTSSC----HHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHH--HHTCSEEEEEECSSHHHHHH
T ss_pred CCEEEecCCCccc-hhhCC----HHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHH--HHhCCEEEEEecCChhHHHH
Confidence 7999999876532 22222 234555555554 5 89999999999998654444 55789999999999999999
Q ss_pred HHHHHHHHHcCCC--------CEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceE
Q 014511 218 VAKGVRMFSKLKV--------PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 289 (423)
Q Consensus 218 ~~~~~~~l~~~~~--------~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~ 289 (423)
+.++++.++..+. ...++|+|++........ .....+++.+.+|.++++.||++..+.++...|+|+.
T Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~ 228 (260)
T 3q9l_A 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRG----DMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI 228 (260)
T ss_dssp HHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTT----SSCCHHHHHHHHCSEEEEEEECCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHhccccccccCCcceEEEEecCCccccccc----cccCHHHHHHHhCCceEEecCCChhHHHHHHcCCCeE
Confidence 9999999987642 478999999754321000 0012578899999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q 014511 290 AADPCGEVANTFQDLGVCVVQQ 311 (423)
Q Consensus 290 ~~~p~s~~~~~~~~la~~i~~~ 311 (423)
+ .|+++++++|.+|+++|.++
T Consensus 229 ~-~~~s~~~~~~~~la~~l~~~ 249 (260)
T 3q9l_A 229 L-DINADAGKAYADTVERLLGE 249 (260)
T ss_dssp G-CTTCHHHHHHHHHHHHHTTC
T ss_pred E-CCCCHHHHHHHHHHHHHhcC
Confidence 9 99999999999999998763
No 6
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=100.00 E-value=3.9e-33 Score=259.52 Aligned_cols=228 Identities=23% Similarity=0.270 Sum_probs=177.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc---cc----ccCCCCCceeeeccCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 140 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~---~~----~~~~~~~~i~~~~~~~ 140 (423)
|+++|+|+|+||||||||+|+|||..|+++|+||++||+|++.++++.++|.... +. ......+.+.. ...|
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEE-CGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhhee-CCCC
Confidence 6799999999999999999999999999999999999999988888888886543 11 11111223333 3478
Q ss_pred ceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 141 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 141 l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
++++|......... .. ....+..+++.+. ..||||||||||+.+...... +..+|.+++|+.|+..++.++.+
T Consensus 80 l~~lp~~~~~~~~~-~~---~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 80 VKVVPAGVSLEGLR-KA---NPEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIA--IAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp CEEEECCSCHHHHH-HH---CHHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHH--HHHSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEcCCCCcChhh-cc---ChHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHH--HHHCCEEEEEeCCChhHHHHHHH
Confidence 99999432211111 11 0344556666554 789999999999998654443 45679999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHH
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 300 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~ 300 (423)
+++.+++.+.+..|+|+|++...... ...+++.+.++.++++.||++..+.++...|+|+.++.|+++++++
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 224 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIE--------MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARA 224 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHH--------HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHH
T ss_pred HHHHHHhcCCCeeEEEEccCCccccc--------chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCCHHHHH
Confidence 99999888888999999996432210 3467888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 014511 301 FQDLGVCVVQQ 311 (423)
Q Consensus 301 ~~~la~~i~~~ 311 (423)
|.+|+++|.++
T Consensus 225 ~~~la~~l~~~ 235 (263)
T 1hyq_A 225 IVELANYIAGG 235 (263)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 7
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=100.00 E-value=2.5e-33 Score=260.02 Aligned_cols=231 Identities=20% Similarity=0.293 Sum_probs=172.6
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--cc---ccCCCCCceeeeccCCc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMNPEKRTIIPTEYLGV 141 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~---~~~~~~~~i~~~~~~~l 141 (423)
+.+++|+|+|+||||||||+|+|||..||++|+||++||+|+|+ ++..++|.... +. ......+.+.+ .+|+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 45789999999999999999999999999999999999999986 45666665431 10 00112223333 5799
Q ss_pred eEEcCCCCCCcc--cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 014511 142 KLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 142 ~~l~~~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
+++|++...... ...... ..+.++++. ..||||||||||+.+...... +..+|.+++|+.|+..++.++.
T Consensus 81 ~vlp~~~~~~~~~~~l~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNA--LAAAEGVVVPVQAEYYALEGVA 152 (257)
T ss_dssp EEECCCTTHHHHHHHHTTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHH--HHHCSEEEEEEESSTHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHH--HHHCCeEEEEecCchHHHHHHH
Confidence 999977542211 111110 345555443 689999999999998654443 4568999999999999999988
Q ss_pred HHHHHHHcC------CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-EeecCchhhhhcccCCCceEeeC
Q 014511 220 KGVRMFSKL------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 220 ~~~~~l~~~------~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
++++.++.+ +.++.|+|+||+..... ..+...+.+.+.+|.+++ +.||++..+.+|...|+|+.++.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~------~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~ 226 (257)
T 1wcv_1 153 GLLATLEEVRAGLNPRLRLLGILVTMYDGRTL------LAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHA 226 (257)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEEESBCTTCS------HHHHHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEeECCCcH------HHHHHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhC
Confidence 888777642 46678999999643221 122456778888888765 67999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 014511 293 PCGEVANTFQDLGVCVVQQCAK 314 (423)
Q Consensus 293 p~s~~~~~~~~la~~i~~~~~~ 314 (423)
|+++++++|.+|+++|.+++..
T Consensus 227 ~~~~~~~~~~~la~~l~~~~~~ 248 (257)
T 1wcv_1 227 PTSPGAHAYRRLAEEVMARVQE 248 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHHHC-
T ss_pred CCChHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999887643
No 8
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=100.00 E-value=2.1e-32 Score=244.86 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=159.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
||+|+|+|+||||||||+|+|||..|+++|+||++||+|+|++...++ +.. ..++++++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~-~~~-----------------~~~~~~~~~~~ 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWS-KAG-----------------KAAFDVFTAAS 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH-TTS-----------------CCSSEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHH-hcC-----------------CCCCcEEecCc
Confidence 689999999999999999999999999999999999999998654333 211 12477777542
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 228 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~ 228 (423)
..+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..+ ..+.++++.+++.
T Consensus 63 --------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 63 --------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAA--VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEA 124 (206)
T ss_dssp --------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHH--HHHCSEEEEEECSCTTT-HHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH--HHHCCEEEEEecCCHHH-HHHHHHHHHHHHH
Confidence 23445555544 689999999999997655444 45679999999999999 9999999999876
Q ss_pred C-----CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-EeecCchhhhhcccCCCceEeeCCCCHHHHHHH
Q 014511 229 K-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 302 (423)
Q Consensus 229 ~-----~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~ 302 (423)
+ .+ +++|+||+.... .. . ....+..+.+|.+++ +.||++..+.++...|+|+++ .|+++++++|.
T Consensus 125 ~~~~~~~~-~~vv~N~~~~~~--~~----~-~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~~~~ 195 (206)
T 4dzz_A 125 QAYSRKVE-ARFLITRKIEMA--TM----L-NVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKGEIE 195 (206)
T ss_dssp SCGGGCCE-EEEEECSBCTTE--EE----E-HHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHHHHH
T ss_pred HHhCCCCc-EEEEEeccCCCc--hH----H-HHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHHHHH
Confidence 4 34 499999975322 11 1 235566666898888 889999999999999999999 99999999999
Q ss_pred HHHHHHHHHH
Q 014511 303 DLGVCVVQQC 312 (423)
Q Consensus 303 ~la~~i~~~~ 312 (423)
+|+++|.+++
T Consensus 196 ~la~~i~~~l 205 (206)
T 4dzz_A 196 ILTKEIVRIF 205 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 9
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.98 E-value=8.6e-32 Score=256.23 Aligned_cols=231 Identities=18% Similarity=0.147 Sum_probs=171.4
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--cccc---------CCCCCcee
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---------NPEKRTII 134 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~~~---------~~~~~~i~ 134 (423)
.+.+++|+|+ +||||||||+|+|||.+||++|+||++||+|+|++....+ +.... +.+. ....+.+.
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l-~~~~~~~l~d~l~~~~~~~~~~~~~~~i 115 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTL-TGSLVPTVIDVLKDVDFHPEELRPEDFV 115 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHH-HTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHh-CccCCCCHHHHHhhccccccCCCHHHhh
Confidence 3567999999 8999999999999999999999999999999998665443 32211 1000 11111222
Q ss_pred eeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHh-cccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 014511 135 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 213 (423)
Q Consensus 135 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~ 213 (423)
....+|++++|++........ .... ......+++. ..++.||||||||||+.+.... ...+..+|.+++|++|+..
T Consensus 116 ~~~~~~l~vlp~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~~~ 192 (307)
T 3end_A 116 FEGFNGVMCVEAGGPPAGTGC-GGYV-VGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDFD 192 (307)
T ss_dssp EECGGGCEEEECCCCCSSSSC-TTHH-HHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSHH
T ss_pred ccCCCCceEEECCCccccccc-chhh-hHHHHHHHHhhhccccCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCcHH
Confidence 335689999998765332211 1111 1122233333 1247899999999998874322 1225578999999999999
Q ss_pred hHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceE
Q 014511 214 AFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 289 (423)
Q Consensus 214 s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~ 289 (423)
++.++.++++.+++. +.+++|+|+||+.. +...+++.+.+|.++++.||++..+.+|...|+|++
T Consensus 193 s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-----------~~~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~~v~ 261 (307)
T 3end_A 193 SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLF 261 (307)
T ss_dssp HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-----------HHHHHHHHHHcCCCceeeCCccHHHHHHHHcCCCeE
Confidence 999999999999863 56778999999642 135788999999999999999999999999999999
Q ss_pred eeCCC---CHHHHHHHHHHHHHHHHH
Q 014511 290 AADPC---GEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 290 ~~~p~---s~~~~~~~~la~~i~~~~ 312 (423)
++.|+ ++++++|.+||++|.++.
T Consensus 262 ~~~p~~~~s~~~~~~~~la~~l~~~~ 287 (307)
T 3end_A 262 EMDEDQDVLAARAEYIRLAESLWRGL 287 (307)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeCCccccHHHHHHHHHHHHHHHhcC
Confidence 99999 899999999999997754
No 10
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.98 E-value=2.8e-32 Score=254.57 Aligned_cols=234 Identities=19% Similarity=0.193 Sum_probs=169.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--ccc---cC---CCCCceeeeccCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE---MN---PEKRTIIPTEYLG 140 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~~---~~---~~~~~i~~~~~~~ 140 (423)
||+|+| |+||||||||+|+|||..||++|+||++||+|+|++++..+++.... +.+ .. ...+.+.....+|
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~ 79 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGG 79 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCC
Confidence 589999 68999999999999999999999999999999999988877654322 100 00 0111122345679
Q ss_pred ceEEcCCCCCCcccccCCchH-HHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhh-hhhcCCCeEEEEeCCCcchHHHH
Q 014511 141 VKLVSFGFSGQGRAIMRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 141 l~~l~~~~~~~~~~~~~~~~~-~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~-~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
++++|++.............. ...+.+.++.+ .++||||||||||+.....+.. .....+|.+++|+.|+..++.++
T Consensus 80 l~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~ 158 (269)
T 1cp2_A 80 IRCVESGGPEPGVGCAGRGIITSINMLEQLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAA 158 (269)
T ss_dssp CEEEECCCCCTTSSCHHHHHHHHHHHHHHTTCC-CTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHH
T ss_pred eeEEeCCCchhhccccCcchhhHHHHHHHHHhh-ccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHH
Confidence 999998754322111000000 01122222222 3679999999998764322211 11135899999999999999999
Q ss_pred HHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCC
Q 014511 219 AKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 294 (423)
Q Consensus 219 ~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~ 294 (423)
.++++.++.. +.+++|+|+|++... ..+...+++.+.+|.++++.||++..+.+|...|+|++++.|+
T Consensus 159 ~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~~~~~ 230 (269)
T 1cp2_A 159 NNISKGIQKYAKSGGVRLGGIICNSRKVA--------NEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPT 230 (269)
T ss_dssp HHHHHHHHHHBTTBBCEEEEEEEECCSSS--------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHCTT
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeecCCcc--------hhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEEECCC
Confidence 8888877653 566789999996421 1234678888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 014511 295 GEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 295 s~~~~~~~~la~~i~~~~ 312 (423)
++++++|.+|+++|.++.
T Consensus 231 s~~~~~~~~l~~~l~~~~ 248 (269)
T 1cp2_A 231 CEQAEEYRELARKVDANE 248 (269)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHhcc
Confidence 999999999999997664
No 11
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.98 E-value=6.4e-32 Score=251.94 Aligned_cols=229 Identities=18% Similarity=0.091 Sum_probs=154.3
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCC---------Cc----ccccCCCCCce
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------NR----LLEMNPEKRTI 133 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~---------~~----~~~~~~~~~~i 133 (423)
+++++|+|+|+||||||||+|+|||.+|| +|+||++||+|+|++.+..+++.. .. +.......+.+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 57899999999999999999999999999 999999999999986655543211 11 11111222334
Q ss_pred eeeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 014511 134 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 213 (423)
Q Consensus 134 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~ 213 (423)
... .+|++++|++.................+.++++.+. +.||||||||||+.+...... +..+|.+++|++|+..
T Consensus 104 ~~~-~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~--l~~aD~vivv~~~~~~ 179 (267)
T 3k9g_A 104 INV-DNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNA--LLCSDYVIIPMTAEKW 179 (267)
T ss_dssp EEE-ETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHH--HTTCSEEEEEEESCTT
T ss_pred ccC-CCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHH--HHHCCeEEEEeCCChH
Confidence 433 489999998754332221111112345667777664 789999999999998665444 5578999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-EEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC
Q 014511 214 AFIDVAKGVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 214 s~~~~~~~~~~l~~~~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
++..+.++++.+++.+.. .+++|+||+.... ..++..+.+.+ +.++++.||+++.+.++...|+|+..
T Consensus 180 s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-------~~~~~~~~l~~--~~~~~~~Ip~~~~~~~a~~~g~~~~~-- 248 (267)
T 3k9g_A 180 AVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-------THKTLFEILKT--KDRFLGTISEREDLNRRIAENNNFDL-- 248 (267)
T ss_dssp HHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-------SCCHHHHHHTT--STTEEEEEEC------------------
T ss_pred HHHHHHHHHHHHHHHhccCCEEEEEecccCcc-------hHHHHHHHHhc--CcccceecCcHHHHHHHHHhcCCcch--
Confidence 999999999999988543 3579999972211 12233444444 77899999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 014511 293 PCGEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 293 p~s~~~~~~~~la~~i~~~~ 312 (423)
.+++.++|+++++++.+++
T Consensus 249 -~~~~~~~~~~i~~~l~~~l 267 (267)
T 3k9g_A 249 -NKDYIKEYENILEIFLKKI 267 (267)
T ss_dssp -CCHHHHHHHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHHHHHhhC
Confidence 5789999999999998763
No 12
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.98 E-value=4.6e-32 Score=255.84 Aligned_cols=232 Identities=20% Similarity=0.188 Sum_probs=168.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--c---cccC-----CCCCceeeecc
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMN-----PEKRTIIPTEY 138 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~---~~~~-----~~~~~i~~~~~ 138 (423)
||+|+| |+||||||||+|+|||.+||++|+||++||+|+|++++.++++.... + .... ...+.+.....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 589999 68999999999999999999999999999999999988877654321 1 1000 01112223456
Q ss_pred CCceEEcCCCCCCcccccCCchHHHHHHHHHHhcc--cCCCcEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCCcchH
Q 014511 139 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE--WGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~yD~iiiD~pp~~~~~~~~-~~~~~~~d~~iiv~~p~~~s~ 215 (423)
+|++++|++.......... .... ...++++.+. .++||||||||||......+. ......+|.+++|++|+..++
T Consensus 81 ~~l~~l~~~~~~~~~~~~~-~~~~-~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~ 158 (289)
T 2afh_E 81 GGVKCVESGGPEPGVGCAG-RGVI-TAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAM 158 (289)
T ss_dssp GGCEEEECCCCCTTTCCHH-HHHH-HHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHH
T ss_pred CCeEEEeCCCccccccccc-hhhh-HHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHH
Confidence 7999999875432211100 0010 0112333321 368999999999876432221 111236899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEee
Q 014511 216 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 291 (423)
Q Consensus 216 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~ 291 (423)
.++.++++.+++. +.++.|+|+|++... ..+...+++.+.+|.++++.||++..+.+|...|+|+.++
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~~ 230 (289)
T 2afh_E 159 YAANNISKGIVKYANSGSVRLGGLICNSRNTD--------REDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEY 230 (289)
T ss_dssp HHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--------THHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEecCCch--------hHHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCceee
Confidence 9998888777653 677889999996321 1124577888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 014511 292 DPCGEVANTFQDLGVCVVQQ 311 (423)
Q Consensus 292 ~p~s~~~~~~~~la~~i~~~ 311 (423)
.|+++++++|.+|+++|.++
T Consensus 231 ~~~s~~~~~~~~la~~l~~~ 250 (289)
T 2afh_E 231 DPKAKQADEYRALARKVVDN 250 (289)
T ss_dssp CTTSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999765
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.97 E-value=1e-31 Score=248.00 Aligned_cols=224 Identities=14% Similarity=0.082 Sum_probs=168.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccc----cC-------------------
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE----MN------------------- 127 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~----~~------------------- 127 (423)
+|+| |+||||||||+|+|||..||++|+||++||+|+| +++..++|....... ..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 8999999999999999999999999999999998 788888876532110 00
Q ss_pred CCCCcee---eeccCCceE-EcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCe
Q 014511 128 PEKRTII---PTEYLGVKL-VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 203 (423)
Q Consensus 128 ~~~~~i~---~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~ 203 (423)
...+.+. .....++++ ++++........... .....++++++.+.++.||||||||||+.+...... +..+|.
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~~~--l~~aD~ 156 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYC-RENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGT--AKAVDM 156 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCH-HHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCHHH--HTTCSE
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCCc-chHHHHHHHHHHhccCCCCEEEEeCCCcccHHHHHH--HHHCCE
Confidence 0000000 012246666 665543221111110 111346666666523899999999999998654443 567899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhC-CCeEEeecCchhhhhcc
Q 014511 204 AVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG-IPHLFDLPIRPTLSASG 282 (423)
Q Consensus 204 ~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ip~~~~i~~a~ 282 (423)
+++|++|+..++..+.++.+.+++.+.+.+++|+|++... ...+++.+.++ .++.+.||++..+.++.
T Consensus 157 viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~-----------~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~ 225 (254)
T 3kjh_A 157 MIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI-----------KEEKLIKKHLPEDKILGIIPYNELFIELS 225 (254)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH-----------HHHHHHHHHSCGGGEEEEEECCHHHHSCS
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh-----------hHHHHHHHHhcCCcccccccCcHHHHHHH
Confidence 9999999999999999999999988888899999996421 24677888887 77889999999999999
Q ss_pred cCCCceEeeCCCCHHHHHHHHHHHHHHHHH
Q 014511 283 DSGMPEVAADPCGEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 283 ~~g~pi~~~~p~s~~~~~~~~la~~i~~~~ 312 (423)
..|+|++++.| +++++|++|+++|.++.
T Consensus 226 ~~g~~~~~~~~--~~~~~~~~la~~l~~~~ 253 (254)
T 3kjh_A 226 LKGEEIWQSTN--PAFVNLHDIYQKLRLEV 253 (254)
T ss_dssp SSSCCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred hCCCccccCCc--HHHHHHHHHHHHHHhhc
Confidence 99999988866 69999999999998764
No 14
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.97 E-value=9.7e-31 Score=253.92 Aligned_cols=243 Identities=17% Similarity=0.128 Sum_probs=148.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC---------------------ccccc-
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---------------------RLLEM- 126 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~---------------------~~~~~- 126 (423)
||+|+|+|+||||||||+|+|||..||++|+|||+||+|+|++.+..+++.+. .+...
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999988777765321 11111
Q ss_pred ------C-CCCC--ceeeeccCCceEEcCCCCCCcccccC---------Cc----hHHHHHHHHHHhcc-cCCCcEEEEc
Q 014511 127 ------N-PEKR--TIIPTEYLGVKLVSFGFSGQGRAIMR---------GP----MVSGVINQLLTTTE-WGELDYLVID 183 (423)
Q Consensus 127 ------~-~~~~--~i~~~~~~~l~~l~~~~~~~~~~~~~---------~~----~~~~~l~~ll~~~~-~~~yD~iiiD 183 (423)
. ...+ .+.....+|++++|++.......... +. .....++++++.+. +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 1 1111 24444556999999875533221110 00 00123566666553 2389999999
Q ss_pred CCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC------------------C----------------
Q 014511 184 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------------------K---------------- 229 (423)
Q Consensus 184 ~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~------------------~---------------- 229 (423)
|||+++.....+ +.++|.+++|+.|+..++.++.++++.++++ +
T Consensus 161 ~pP~l~~~~~~a--L~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (361)
T 3pg5_A 161 VGPSLGPFNRTV--LLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFD 238 (361)
T ss_dssp CCSCCSHHHHHH--HTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSS
T ss_pred CCCCcCHHHHHH--HHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccccc
Confidence 999998665544 6678999999999999999999888877654 1
Q ss_pred ---CCEEEEEEecccccCCCc--eeeccCCChHHHHHHHh-----------CCCeEEeecCch-hhhhcccCCCceEeeC
Q 014511 230 ---VPCIAVVENMCHFDADGK--RYYPFGRGSGSQVVQQF-----------GIPHLFDLPIRP-TLSASGDSGMPEVAAD 292 (423)
Q Consensus 230 ---~~~~gvV~N~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~ip~~~-~i~~a~~~g~pi~~~~ 292 (423)
++++|+|+|++....... ......+...+++.+.. ....++.||... .+..|...|.|+++..
T Consensus 239 ~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~l~ 318 (361)
T 3pg5_A 239 GEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIMELS 318 (361)
T ss_dssp SSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC--------------------
T ss_pred ccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEECc
Confidence 678999999965433111 00111223334444444 334478888755 5678999999999997
Q ss_pred C-----------CCHHHHHHHHHHHHHHHHHH
Q 014511 293 P-----------CGEVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 293 p-----------~s~~~~~~~~la~~i~~~~~ 313 (423)
+ ...+.+.|.+||..|.+++.
T Consensus 319 ~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~ 350 (361)
T 3pg5_A 319 SSDRVRGAQINQRNAYAEKINSVAANVYKALF 350 (361)
T ss_dssp --------------CCHHHHHHHHHHHHHHHC
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 34688889999998888775
No 15
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.97 E-value=5.4e-31 Score=259.95 Aligned_cols=242 Identities=18% Similarity=0.199 Sum_probs=140.0
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHH------HCCCcEEEEEecCCCCCCcccCCCCCccc-----------c---
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA------GMGARVGIFDADVYGPSLPTMVSPENRLL-----------E--- 125 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La------~~G~~VlliD~D~~~~~~~~~~~~~~~~~-----------~--- 125 (423)
..++++|+|+|+||||||||+|+|||..|| ++|+||++||+|+|+ +++.+||...... .
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 186 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLD 186 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCC
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhccc
Confidence 357899999999999999999999999999 679999999999987 6777877654210 0
Q ss_pred -cCCCCCceeeeccCCceEEcCCCCCCcc---------cccCC-chHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhh
Q 014511 126 -MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 194 (423)
Q Consensus 126 -~~~~~~~i~~~~~~~l~~l~~~~~~~~~---------~~~~~-~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~ 194 (423)
.....+.+.+...+|++++|++...... ..+.+ ......++.+++.+. ++||||||||||+++.....
T Consensus 187 ~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~ 265 (403)
T 3ez9_A 187 AETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLN 265 (403)
T ss_dssp HHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHH
T ss_pred ccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHH
Confidence 0011344566667899999988652110 00111 111234456666654 78999999999999866554
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHHH-------HHHHHcC--CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhC
Q 014511 195 LCQVVPLTAAVIVTTPQKLAFIDVAKG-------VRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 265 (423)
Q Consensus 195 ~~~~~~~d~~iiv~~p~~~s~~~~~~~-------~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (423)
. +.++|.+++|++|+..++.++.+. ++.+++. +.++.|++.++..+.... ..+...+.+.+.+|
T Consensus 266 a--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~-----~~~~~~~~~~~~~g 338 (403)
T 3ez9_A 266 G--LAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR-----DHETSHSLAREVYA 338 (403)
T ss_dssp H--HHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH-----HHHHHHHHHHHHHT
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch-----hHHHHHHHHHHHhh
Confidence 4 557899999999998877654443 3444443 455566655554333210 11234577888899
Q ss_pred CCeE-EeecCchhhhhcccCCCceEeeCCC---------CHHHHHHHHHHHHHHHHHHHhc
Q 014511 266 IPHL-FDLPIRPTLSASGDSGMPEVAADPC---------GEVANTFQDLGVCVVQQCAKIR 316 (423)
Q Consensus 266 ~~~~-~~ip~~~~i~~a~~~g~pi~~~~p~---------s~~~~~~~~la~~i~~~~~~~~ 316 (423)
.+++ +.||++..+.++...|+|++++.|+ ..+.+.|.+++++|.++++..+
T Consensus 339 ~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~~~~ 399 (403)
T 3ez9_A 339 SNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIEFVR 399 (403)
T ss_dssp TSEECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888 7899999999999999999998875 3566789999999999888765
No 16
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.97 E-value=1.2e-31 Score=264.23 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=173.6
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecCCCCCCcccCCCCCcc-----------cc---
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYGPSLPTMVSPENRL-----------LE--- 125 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~~~~~~~~~~~~~~~~-----------~~--- 125 (423)
..++++|+|+|+||||||||+|+|||..||+ +|+||++||+|+|+ +++.++|..... ..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 183 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVS 183 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhcc
Confidence 3578999999999999999999999999994 69999999999986 577777654310 00
Q ss_pred -cCCCCCceeeeccCCceEEcCCCCCCcc----------cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhh
Q 014511 126 -MNPEKRTIIPTEYLGVKLVSFGFSGQGR----------AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 194 (423)
Q Consensus 126 -~~~~~~~i~~~~~~~l~~l~~~~~~~~~----------~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~ 194 (423)
.....+.+.+...+|++++|++...... ...........++++++.+. ++||||||||||+++.....
T Consensus 184 ~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~ 262 (398)
T 3ez2_A 184 REELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKN 262 (398)
T ss_dssp HHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHH
T ss_pred ccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHH
Confidence 0011234556667899999987652100 00011112234455666554 78999999999999876555
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHHH-------HHHHHcC--CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhC
Q 014511 195 LCQVVPLTAAVIVTTPQKLAFIDVAKG-------VRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 265 (423)
Q Consensus 195 ~~~~~~~d~~iiv~~p~~~s~~~~~~~-------~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (423)
. +.++|.+++|++|+..++..+.+. ++.+++. +.++.|+|.|+....... ..+...+++.+.+|
T Consensus 263 ~--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~-----~~~~~~~~l~~~~g 335 (398)
T 3ez2_A 263 A--LASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKA-----DHKYCHSLAKEVFG 335 (398)
T ss_dssp H--HHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCH-----HHHHHHHHHHHHHG
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCch-----hHHHHHHHHHHHhc
Confidence 4 557899999999998876654443 3334433 455677777775544321 12235678888899
Q ss_pred CCeE-EeecCchhhhhcccCCCceEeeCCCC---------HHHHHHHHHHHHHHHHHHHhc
Q 014511 266 IPHL-FDLPIRPTLSASGDSGMPEVAADPCG---------EVANTFQDLGVCVVQQCAKIR 316 (423)
Q Consensus 266 ~~~~-~~ip~~~~i~~a~~~g~pi~~~~p~s---------~~~~~~~~la~~i~~~~~~~~ 316 (423)
.+++ +.||++..+.++...|+|++++.|++ .+.+.+.+++++|.+++..++
T Consensus 336 ~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l~~~~ 396 (398)
T 3ez2_A 336 GDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIR 396 (398)
T ss_dssp GGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877 78999999999999999999998863 567788999999988887764
No 17
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.97 E-value=6.1e-31 Score=249.26 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=174.4
Q ss_pred CCceEEEEee--CCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc---CCCCCc---ccc---cCCCCCceee
Q 014511 67 KISNIVAVSS--CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPENR---LLE---MNPEKRTIIP 135 (423)
Q Consensus 67 ~~~kvI~v~s--~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~---~~~~~~---~~~---~~~~~~~i~~ 135 (423)
++.++|+|+| +||||||||+|+|||..||++|+||++||+|+|++....+ ++.... +.. .....+.+..
T Consensus 32 ~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 111 (298)
T 2oze_A 32 NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVH 111 (298)
T ss_dssp HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEE
T ss_pred CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcc
Confidence 4567999999 8999999999999999999999999999999998753322 343211 100 0111223333
Q ss_pred eccCCceEEcCCCCCCccccc----CCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 014511 136 TEYLGVKLVSFGFSGQGRAIM----RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 211 (423)
Q Consensus 136 ~~~~~l~~l~~~~~~~~~~~~----~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~ 211 (423)
. .+|++++|++........+ ..+.....++++++.+. +.||||||||||+.+...... +.++|.+++|+.|+
T Consensus 112 ~-~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~--l~~aD~viiv~~~~ 187 (298)
T 2oze_A 112 L-TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNA--IVASDYVMIPLQAE 187 (298)
T ss_dssp S-SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHH--HHHCSEEEEEECGG
T ss_pred c-CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHH--HHHCCeEEEEecCc
Confidence 3 4799999977543221111 11122345777887765 789999999999998755444 45689999999999
Q ss_pred cchHHHHHHHHHHHHcC------CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCC--CeE-EeecCchhhhhcc
Q 014511 212 KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI--PHL-FDLPIRPTLSASG 282 (423)
Q Consensus 212 ~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~ip~~~~i~~a~ 282 (423)
..++.++.++++.+++. +++++|+|+||+.... . ..+...+++.+.++. +++ ..||.+..+.+|.
T Consensus 188 ~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--~----~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a~ 261 (298)
T 2oze_A 188 EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--A----TIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWS 261 (298)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--H----HHHHHHHHHHHHTTTTCCBCSSCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--H----HHHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence 99999999988888753 6778999999965432 1 122457788888885 444 5799999999999
Q ss_pred cCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHhc
Q 014511 283 DSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIR 316 (423)
Q Consensus 283 ~~g~pi~~~~p~s~~~~~~~~la~~i~~~~~~~~ 316 (423)
..|+|+++ ..+++++++|.+|+++|.+++....
T Consensus 262 ~~G~~v~~-~~~~~~~~~~~~la~ei~~~~~~~~ 294 (298)
T 2oze_A 262 KNGITEHK-GYDKKVLSMYKNVFFEMLERIIQLE 294 (298)
T ss_dssp HHCCCSSS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChhh-hcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999976 2234689999999999999886553
No 18
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.96 E-value=3.5e-30 Score=231.16 Aligned_cols=198 Identities=21% Similarity=0.241 Sum_probs=152.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 149 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~ 149 (423)
|+|+|+|+||||||||+|+|||..|+++| ||++||+|+|++.. .+++. .. .+ .++++..
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~-~~-----------l~-----~~vi~~~-- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR-GS-----------LP-----FKVVDER-- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH-SC-----------CS-----SEEEEGG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC-CC-----------CC-----cceeCHH--
Confidence 58999999999999999999999999999 99999999997543 33322 10 00 1444421
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCC-CChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 014511 150 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 228 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~-~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~ 228 (423)
.++.+ ++.||||||||||+ .+...... +..+|.+++|+.|+..++..+.++++.+++.
T Consensus 60 --------------~l~~l-----~~~yD~viiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 60 --------------QAAKY-----APKYQNIVIDTQARPEDEDLEAL--ADGCDLLVIPSTPDALALDALMLTIETLQKL 118 (209)
T ss_dssp --------------GHHHH-----GGGCSEEEEEEECCCSSSHHHHH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHh-----hhcCCEEEEeCCCCcCcHHHHHH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhc
Confidence 23333 37899999999999 77654443 5578999999999999999999999999885
Q ss_pred -CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-EeecCchhhhhcccCCCceEee-CCCC-HHHHHHHHH
Q 014511 229 -KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAA-DPCG-EVANTFQDL 304 (423)
Q Consensus 229 -~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~~~~i~~a~~~g~pi~~~-~p~s-~~~~~~~~l 304 (423)
+.+ +++|+||+..... . ..+ ...+..+.+|.+++ +.||.+..+.+|...|+|+.++ .|++ +++++|.+|
T Consensus 119 ~~~~-~~vv~N~~~~~~~-~----~~~-~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~~~l 191 (209)
T 3cwq_A 119 GNNR-FRILLTIIPPYPS-K----DGD-EARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDYKAT 191 (209)
T ss_dssp CSSS-EEEEECSBCCTTS-C----HHH-HHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHHHHH
T ss_pred cCCC-EEEEEEecCCccc-h----HHH-HHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHHHHH
Confidence 555 8999999654320 1 011 23333344888877 6899999999999999999999 8999 999999999
Q ss_pred HHHHHHHHHHhc
Q 014511 305 GVCVVQQCAKIR 316 (423)
Q Consensus 305 a~~i~~~~~~~~ 316 (423)
+++|.+++...+
T Consensus 192 ~~el~~~~~~~~ 203 (209)
T 3cwq_A 192 GKEIVEEILTLE 203 (209)
T ss_dssp HHHHHHHHTSTT
T ss_pred HHHHHHHHHhhh
Confidence 999998876554
No 19
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=99.96 E-value=2.7e-29 Score=196.52 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=76.8
Q ss_pred ccceeeeccCCcEEEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCCeeEEEEcCCC
Q 014511 319 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dg 398 (423)
.|..+++++..+.|.|.|+||.. +.|+++|||||||||+|+++.|+||+ +..+|.+|+|.+++++|+|+|+|.|+||
T Consensus 8 ~P~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~c~ca~c~~~~t~qr~--l~~~~~~v~~~~i~~~g~yal~i~wsDG 84 (101)
T 3luu_A 8 QPLEIRPLMISRVMEVDWADGHT-SRLTFEHLRVECPCAECKGHTPDQAQ--IVTGKEHVSVVEVVPVGHYAVQLHFSDG 84 (101)
T ss_dssp CEEEEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCCC----------C--CCCCCTTCCEEEEEEETTTEEEEEETTS
T ss_pred CCeEEEEeCCCCEEEEEeCCCCE-EEECHHHHHhhCCChhhcCccCCccc--cccCCCCcceeEEEECCCCeEEEEECCC
Confidence 56788999999999999999998 99999999999999999999999998 5689999999999999999999999999
Q ss_pred C-cccCChHHHHhhhh
Q 014511 399 F-SQIAPYDQLQTMER 413 (423)
Q Consensus 399 h-~s~y~~~~L~~~~~ 413 (423)
| +|+|+|+||+++++
T Consensus 85 H~~s~Y~~~~L~~~~~ 100 (101)
T 3luu_A 85 HNTGIFTWEYLRRLDA 100 (101)
T ss_dssp CCCCEEEHHHHHHHTT
T ss_pred CceeEECHHHHHHhhh
Confidence 9 89999999999864
No 20
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.95 E-value=4e-30 Score=242.13 Aligned_cols=224 Identities=17% Similarity=0.111 Sum_probs=155.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCc-eEEcC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV-KLVSF 146 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l-~~l~~ 146 (423)
|+|+|+|+|+||||||||+|+|||..|+++|+||++||+|+..+++..+++......... . .....++ +++|+
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~--~----~~~~~~l~~vl~~ 76 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNK--K----IELPEPLALNLSD 76 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH--T----CCCCCCEEECSSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhc--c----ccCCCchheEeeC
Confidence 678999999999999999999999999999999999999994456666665432111000 0 0112467 77775
Q ss_pred CC--CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 014511 147 GF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 224 (423)
Q Consensus 147 ~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~ 224 (423)
+. ....... .....+..+++.+. +.||||||||||+.+...... +..+|.+++|+.|+..++..+.++++.
T Consensus 77 ~~~~~~~~~~~----~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 77 NDVALAERPEE----EQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMA--HGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp CHHHHTTSCHH----HHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHH--HHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCCcChhhh----hhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHH--HHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 21 1111111 12335566666554 689999999999997654444 567899999999999888765544433
Q ss_pred -------------H---Hc---C--C-C-CEEEEEEecccccCCCceeeccCCChHHHHHH---HhCCCeEEeecCchhh
Q 014511 225 -------------F---SK---L--K-V-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQ---QFGIPHLFDLPIRPTL 278 (423)
Q Consensus 225 -------------l---~~---~--~-~-~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ip~~~~i 278 (423)
+ ++ . + . ..+++|+||+..... . ..++..+.+.+ .+|.++.+.||++..+
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~~~Ip~~~~~ 224 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTEA-R----NRKRLEDRLNALAKRVGFRIGPGLRDRVIY 224 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTCCG-G----GHHHHHHHHHHHHHHHCCEEEECCCCCHHH
T ss_pred hhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCCCc-c----hhHHHHHHHHHHHHHcCCccCCCCCchHHH
Confidence 3 21 1 2 1 236799999654320 0 01122333333 4888777889999999
Q ss_pred hhcccCCCceEeeCC----------CCHHHHHHHHHHHHHH
Q 014511 279 SASGDSGMPEVAADP----------CGEVANTFQDLGVCVV 309 (423)
Q Consensus 279 ~~a~~~g~pi~~~~p----------~s~~~~~~~~la~~i~ 309 (423)
.+|...|+|++++.| +++++++|.+|+++|.
T Consensus 225 ~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~ 265 (286)
T 2xj4_A 225 RELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLG 265 (286)
T ss_dssp HHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhC
Confidence 999999999999998 8899999999998885
No 21
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.94 E-value=3.5e-26 Score=214.20 Aligned_cols=172 Identities=17% Similarity=0.225 Sum_probs=135.1
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc------ccccCCCCCceeeeccC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYL 139 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~ 139 (423)
...+|+|+|+|+|||+||||+|+|||..||+.|+||+|||+|++.+++..+|+.... +.......+.+.....+
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 168 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIA 168 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence 456799999999999999999999999999999999999999999999988886543 11223345667777778
Q ss_pred CceEEcCCCCCCc-ccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHH
Q 014511 140 GVKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 140 ~l~~l~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
|++++|++..... .+.+..+ .+.++++.+. ..||+|||||||..... ...+ ...+|.+++|+.++..+...
T Consensus 169 ~l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~l--~~~aD~vllVv~~~~~~~~~ 241 (286)
T 3la6_A 169 KFDLIPRGQVPPNPSELLMSE----RFAELVNWAS-KNYDLVLIDTPPILAVTDAAIV--GRHVGTTLMVARYAVNTLKE 241 (286)
T ss_dssp TEEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCTHHHHH--TTTCSEEEEEEETTTSBHHH
T ss_pred CEEEEeCCCCCCCHHHHhchH----HHHHHHHHHH-hCCCEEEEcCCCCcchHHHHHH--HHHCCeEEEEEeCCCCcHHH
Confidence 9999998865433 3334444 4445555443 68999999999987532 1222 23479999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccC
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCHFDA 244 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~~~~ 244 (423)
+.++++.+++.+.+++|+|+|++....
T Consensus 242 ~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 242 VETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 999999999999999999999975443
No 22
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.93 E-value=1.1e-25 Score=209.53 Aligned_cols=171 Identities=22% Similarity=0.252 Sum_probs=130.6
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc------cccCCCCCceeeeccC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL------LEMNPEKRTIIPTEYL 139 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~ 139 (423)
.+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+++..+|+..... .......+.+.+...+
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~ 158 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIE 158 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSST
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCC
Confidence 3567999999999999999999999999999999999999999999998888865421 1111223445555568
Q ss_pred CceEEcCCCCCCc-ccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCcchHHH
Q 014511 140 GVKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 140 ~l~~l~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~-~~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
|++++|++..... .+.+..+ .+.++++.+. +.||||||||||...... ..+ ...+|.+++|+.++..+...
T Consensus 159 ~l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l--~~~aD~vilVv~~~~~~~~~ 231 (271)
T 3bfv_A 159 DLDVLTSGPIPPNPSELITSR----AFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLF--SKFTGNVVYVVNSENNNKDE 231 (271)
T ss_dssp TEEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHH--HHHHCEEEEEEETTSCCHHH
T ss_pred CEEEEECCCCCCCHHHHhChH----HHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHH--HHHCCEEEEEEeCCCCcHHH
Confidence 9999998865433 2333333 3455555543 689999999999765321 112 22469999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+.++++.+++.+.+++|+|+|++...
T Consensus 232 ~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 232 VKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 99999999999999999999997543
No 23
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=99.93 E-value=5e-26 Score=184.78 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=82.2
Q ss_pred ccceeeeccCCcEEEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCCeeEEEEcCCC
Q 014511 319 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dg 398 (423)
.|+.+.++...+.|.|.|+||.. +.|+++|||||||||+|+++. ||+++. .+.+|.+.+++++|+|+|+|.|+||
T Consensus 10 ~p~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~Cpcaec~~~~--qr~l~~--~~~dv~i~~i~~vG~yaL~I~wsDG 84 (132)
T 2l6n_A 10 KVTGLKLKRKSRQLEISFDNGQQ-FTLSCELLRVYSPSAEVHGHG--NPVLVT--HKKNVNINAITPVGNYAVKLVFDDG 84 (132)
T ss_dssp CEEEEEEEGGGTEEEEEETTSCE-EEEEHHHHHHSCSCSSSSSSS--CCCCCC--CCSSCCEEEEEEETTTEEEEEETTT
T ss_pred CCeeEEEecCCCEEEEEECCCCE-EEeCHHHHHhcCCCcccCCcc--cccccc--CCCCcceEEEEecCCceEEEEeCCC
Confidence 36678888888999999999998 999999999999999999987 999886 5689999999999999999999999
Q ss_pred Ccc-cCChHHHHhhhh
Q 014511 399 FSQ-IAPYDQLQTMER 413 (423)
Q Consensus 399 h~s-~y~~~~L~~~~~ 413 (423)
|.| +|+|+||++++.
T Consensus 85 H~SGiYs~~~L~~l~~ 100 (132)
T 2l6n_A 85 HDTGLYSWKVLYDLAS 100 (132)
T ss_dssp BCCCCEEHHHHHHHHT
T ss_pred CccCEECHHHHHHHhh
Confidence 976 999999999853
No 24
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=99.93 E-value=8.9e-26 Score=181.91 Aligned_cols=88 Identities=24% Similarity=0.436 Sum_probs=81.0
Q ss_pred ccceeeeccCCcEEEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCCeeEEEEcCCC
Q 014511 319 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dg 398 (423)
.|+.+.++...+.|.|.|+ |.+ +.|+++|||||||||+|+++ +||++++. +.++.+.+++++|+|+|+|.|+||
T Consensus 4 ~P~~i~l~~~~~~L~v~w~-G~~-~~~~~~wLRd~Cpcaec~~~--~qr~l~~~--~~dv~i~~i~~~G~yaL~I~wsDG 77 (124)
T 2l6p_A 4 IPSAIQLHKASKTLTLRYG-EDS-YDLPAEFLRVHSPSAEVQGH--GNPVLQYG--KLNVGLVGVEPAGQYALKLSFDDG 77 (124)
T ss_dssp CCSCCBCCTTTCEEEEEET-TEE-EEEEHHHHHHTCCCSSCCSC--CCCCCCCS--CTTCCEEEEEECSSSCEEEEETTS
T ss_pred CCeEEEEecCCCEEEEEEC-CEE-EEeCHHHHHhcCCCcccCCC--CccccccC--CCCcceEEEEEcCCceEEEEECCC
Confidence 3667788888899999999 877 99999999999999999997 99999874 699999999999999999999999
Q ss_pred C-cccCChHHHHhhh
Q 014511 399 F-SQIAPYDQLQTME 412 (423)
Q Consensus 399 h-~s~y~~~~L~~~~ 412 (423)
| +|+|+|+||++++
T Consensus 78 H~sgiY~~~~L~~l~ 92 (124)
T 2l6p_A 78 HDSGLFTWDYLYELA 92 (124)
T ss_dssp CCCCCCTTHHHHHHH
T ss_pred CcceEECHHHHHHhh
Confidence 9 6899999999984
No 25
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.92 E-value=3e-25 Score=214.12 Aligned_cols=201 Identities=20% Similarity=0.206 Sum_probs=135.0
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
..+++|+|+|+||||||||+|+|||..||++|+||++||+|++ ++++.+|+......... ....++++....
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~-------v~g~~~l~~~~i 94 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQEFGHEPTK-------VKGYDNLYVVEI 94 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHHHCSCCCSSCEE-------CTTCSSEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCCCCCcCccc-------cccccceeeecc
Confidence 4678999999999999999999999999999999999999995 57777777642210000 000122222211
Q ss_pred CCCC--------------------C-------cccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhh---
Q 014511 147 GFSG--------------------Q-------GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLC--- 196 (423)
Q Consensus 147 ~~~~--------------------~-------~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~--- 196 (423)
.... . ......+......+..+.+.+.+.+||||||||||+.....+...
T Consensus 95 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~~ 174 (349)
T 3ug7_A 95 DPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEV 174 (349)
T ss_dssp CHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHHH
Confidence 1000 0 000111222222334444444457999999999996543111000
Q ss_pred ----------------------------------------------------------hhcCCCeEEEEeCCCcchHHHH
Q 014511 197 ----------------------------------------------------------QVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 197 ----------------------------------------------------------~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
.-...+.+++|++|+..++.++
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~ 254 (349)
T 3ug7_A 175 MDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILES 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHH
Confidence 0011478999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCC-----CceeeccCCChHHHHHHHhCCCeEEeecCch
Q 014511 219 AKGVRMFSKLKVPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 276 (423)
Q Consensus 219 ~~~~~~l~~~~~~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 276 (423)
.+.++++++.++++.|+|+||+.+... ...+..+ ++..+++.+.++.+.++.||+.+
T Consensus 255 ~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~-~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 255 ERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQ-LKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHH-HHHHHHHHHHSTTSEEEEEECCS
T ss_pred HHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHH-HHHHHHHHHHcCCCcEEEecCCC
Confidence 999999999999999999999876521 1111122 46788999999999999999865
No 26
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.92 E-value=4.8e-25 Score=208.13 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=131.4
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--c----cccCCCCCceeeeccC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LEMNPEKRTIIPTEYL 139 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~----~~~~~~~~~i~~~~~~ 139 (423)
...+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+++..+|+.... + .......+.+.+...+
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~ 180 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKG 180 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTT
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCC
Confidence 345789999999999999999999999999999999999999998898888886542 1 1111223445565668
Q ss_pred CceEEcCCCCCCcc-cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 014511 140 GVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 140 ~l~~l~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
|++++|++...... +.+..+ .++++++.+. +.||||||||||+......... ...+|.+++|+.++..+...+
T Consensus 181 ~l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l-~~~ad~vilV~~~~~~~~~~~ 254 (299)
T 3cio_A 181 GFDVITRGQVPPNPSELLMRD----RMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEV 254 (299)
T ss_dssp TEEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCTHHHHH-GGGCSEEEEEEETTTSCTTHH
T ss_pred CEEEEECCCCCCCHHHHhCHH----HHHHHHHHHH-hCCCEEEEcCCCCchhHHHHHH-HHHCCEEEEEEcCCCChHHHH
Confidence 99999987654332 233333 4455555543 6899999999998752211111 234799999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccC
Q 014511 219 AKGVRMFSKLKVPCIAVVENMCHFDA 244 (423)
Q Consensus 219 ~~~~~~l~~~~~~~~gvV~N~~~~~~ 244 (423)
.+.++.+++.+.+++|+|+|++....
T Consensus 255 ~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 255 SLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 99999999999999999999975443
No 27
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.92 E-value=7.4e-26 Score=220.69 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=134.5
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc--ccc----C--------CCCCc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--LEM----N--------PEKRT 132 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~--~~~----~--------~~~~~ 132 (423)
+.+|+|+|+|+||||||||+|+|||..||++|+||++||+| ..++++.++|..... ... . ...+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~~ 219 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESC 219 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHHT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHHH
Confidence 46899999999999999999999999999999999999999 566888888876431 100 0 01122
Q ss_pred eeeeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 014511 133 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 212 (423)
Q Consensus 133 i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~ 212 (423)
+. ....|++++|++........+........++.+.+ +..||||||||||+.+.....+ +..+|.+++|++|+.
T Consensus 220 i~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~yD~VIID~p~~~~~~~~~~--l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 220 IK-QSQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNYDEIIVDLPFSLEIEKLKL--LSKAWRIIVVNDGSQ 293 (373)
T ss_dssp CE-ECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHH---TSCCSEEEEECCCCCCHHHHHH--HTTCSEEEEEECCCH
T ss_pred hh-cCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEecCCc
Confidence 22 33489999998765544444444444445555442 3689999999999998765555 557899999999999
Q ss_pred chHH---HHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhh
Q 014511 213 LAFI---DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 278 (423)
Q Consensus 213 ~s~~---~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i 278 (423)
.+.. ++.+.++.+... .+ +++|.||.....+.. ...+++.+..++++++.||+++..
T Consensus 294 ~s~~~l~~~~~~l~~l~~~-~~-~~vv~N~~~v~~~~~-------~~~~~fl~~~~l~~lG~IP~D~~~ 353 (373)
T 3fkq_A 294 LSNYKFMRAYESVVLLEQN-DD-INIIRNMNMIYNKFS-------NKNSEMLSNISIKTIGGAPRYEHA 353 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TT-CCCGGGEEEEECSCC-------TTTCCCCCSCSCEEEEECCCCTTC
T ss_pred hHHHHHHHHHHHHHHhccc-CC-cEEEehhHHHHHHHH-------HHHHHHhhcCCccceeecCCCCCc
Confidence 8854 444555555442 22 666777653222110 112223334588999999998753
No 28
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.91 E-value=2e-25 Score=213.39 Aligned_cols=206 Identities=16% Similarity=0.210 Sum_probs=130.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc--cccCCCCCc-------ee-----
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--LEMNPEKRT-------II----- 134 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~--~~~~~~~~~-------i~----- 134 (423)
|++|+|+|+||||||||+|+|||..||++|+||++||+|+ .++++.+||..... ......... ..
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~~ 91 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQA 91 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHHH
Confidence 5899999999999999999999999999999999999999 46777777764210 000000000 00
Q ss_pred eeccCCceEEcCCCCCC-----cccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh-h--------------
Q 014511 135 PTEYLGVKLVSFGFSGQ-----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-T-------------- 194 (423)
Q Consensus 135 ~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~-~-------------- 194 (423)
........+++.+.... ....+.+..-...+..+.+.+.+.+||+|||||||+.....+ .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~~ 171 (324)
T 3zq6_A 92 KLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIK 171 (324)
T ss_dssp HC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 00000011233221100 111222333233344444444457999999999994321100 0
Q ss_pred --------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 014511 195 --------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 230 (423)
Q Consensus 195 --------------------------------------------~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~ 230 (423)
...-...+.+++|++|+..++.++.++++++++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi 251 (324)
T 3zq6_A 172 IRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSI 251 (324)
T ss_dssp HHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCCC
Confidence 000011368999999999999999999999999999
Q ss_pred CEEEEEEecccccCC-----CceeeccCCChHHHHHHHhCCCeEEeecCch
Q 014511 231 PCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 276 (423)
Q Consensus 231 ~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 276 (423)
++.|+|+||+.+... ...+.. ....++++.+.++.+.++.||+.+
T Consensus 252 ~v~gvV~N~~~~~~~~~~~~~~~~~~-~~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 252 HADGVIVNQVLPEESDCEFCNARRKL-QQERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp CEEEEEEEEECCSCCCSHHHHHHHHH-HHHHHHHHHHHTTTSEEEEEECCS
T ss_pred CccEEEEcCCccccCCChHHHHHHHH-HHHHHHHHHHHcCCCcEEEecCCC
Confidence 999999999876521 111112 235778899999988999999854
No 29
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.90 E-value=2.4e-24 Score=207.85 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=113.1
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCcccCCCCCcc--cccCCCCCce----eee--
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRL--LEMNPEKRTI----IPT-- 136 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~~~~~~~~~~~~~~--~~~~~~~~~i----~~~-- 136 (423)
+..++|+|+|+||||||||+|+|||..|| ++|+||++||+|++ ++++.+||..... .......... .+.
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~ 93 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAA 93 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHH
Confidence 45679999999999999999999999999 89999999999996 7888888765320 0000000000 000
Q ss_pred --------c-----------cCCceEEcCCCCCCcc-cccCCchHHHHHHHHHHhcccC------CCcEEEEcCCC-CCC
Q 014511 137 --------E-----------YLGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWG------ELDYLVIDMPP-GTG 189 (423)
Q Consensus 137 --------~-----------~~~l~~l~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~------~yD~iiiD~pp-~~~ 189 (423)
. ..++++++.+....+. ..+.+..-...+.++++.+.+. .|||||||||| |..
T Consensus 94 l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~t 173 (354)
T 2woj_A 94 LKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHT 173 (354)
T ss_dssp HHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHH
T ss_pred HHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHH
Confidence 0 0145555432110110 1233333334566666655432 79999999999 420
Q ss_pred ---------------------hhhhhh-----------------------------hhhcCCCeEEEEeCCCcchHHHHH
Q 014511 190 ---------------------DIQLTL-----------------------------CQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 190 ---------------------~~~~~~-----------------------------~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
.....+ .....+|.+++|++|+..++.++.
T Consensus 174 LrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~ 253 (354)
T 2woj_A 174 LRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETE 253 (354)
T ss_dssp HHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHH
Confidence 000000 000156889999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEeccc
Q 014511 220 KGVRMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~ 241 (423)
++++.+++.++++.++|+|++.
T Consensus 254 r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 254 RLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCCEEEEecCC
Confidence 9999999999999999999987
No 30
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.89 E-value=7.7e-23 Score=195.19 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=124.4
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
+.+++|.|+|+||||||||+|+|||..||++|+||++||+|++. ++..+|+......... ....+|++.+..
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~-~l~~~l~~~~~~~~~~-------v~~~~~L~~~~i 84 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH-NLSDAFSQKFGKEARL-------VEGFDNLYAMEI 84 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC-HHHHHHTSCCCSSCEE-------CTTCSSEEEEEC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC-ChhHHhccccCCCcee-------ecCCCCceeeec
Confidence 44567889999999999999999999999999999999999976 5555555431100000 000011111110
Q ss_pred ------------------------CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh-hh------
Q 014511 147 ------------------------GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TL------ 195 (423)
Q Consensus 147 ------------------------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~-~~------ 195 (423)
+........+.+..-...+.++.+.+.+.+||||||||||......+ .+
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~~ 164 (334)
T 3iqw_A 85 DPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEK 164 (334)
T ss_dssp CC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC--
T ss_pred CHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 00000011223333333455555554568999999999993221100 00
Q ss_pred ----------------------------------------------------hhhcCCCeEEEEeCCCcchHHHHHHHHH
Q 014511 196 ----------------------------------------------------CQVVPLTAAVIVTTPQKLAFIDVAKGVR 223 (423)
Q Consensus 196 ----------------------------------------------------~~~~~~d~~iiv~~p~~~s~~~~~~~~~ 223 (423)
..-...+.+++|++|+..++..+.++++
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~ 244 (334)
T 3iqw_A 165 ALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQ 244 (334)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHH
Confidence 0001235799999999999999999999
Q ss_pred HHHcCCCCEEEEEEecccccCCC-c-----eeeccCCChHHHHHHHhCC-CeEEeecCc
Q 014511 224 MFSKLKVPCIAVVENMCHFDADG-K-----RYYPFGRGSGSQVVQQFGI-PHLFDLPIR 275 (423)
Q Consensus 224 ~l~~~~~~~~gvV~N~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~-~~~~~ip~~ 275 (423)
.+++.++++.|+|+||+.+.... . ..+..++..++++.+.|+. ..+..+|..
T Consensus 245 ~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~ 303 (334)
T 3iqw_A 245 ELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLL 303 (334)
T ss_dssp HHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCC
Confidence 99999999999999998742211 0 0011234566778888864 345566653
No 31
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.88 E-value=7.3e-23 Score=195.88 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=129.4
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc--ccCCCCCceeeec-------
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRTIIPTE------- 137 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~------- 137 (423)
+..++|+|+|+||||||||+|+|||..||++|+||++||+|++ ++++.+||...... ...... .+....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~-~l~~~~~~~~~~~ 93 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFD-NLSAMEIDPNLSI 93 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCS-SEEEEECCHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCC-CeeEEecCHHHHH
Confidence 3457899999999999999999999999999999999999998 67777777542100 000000 010000
Q ss_pred ---cCC-----ce-EEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCC-CCh------hhh--------
Q 014511 138 ---YLG-----VK-LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGD------IQL-------- 193 (423)
Q Consensus 138 ---~~~-----l~-~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~-~~~------~~~-------- 193 (423)
..+ ++ +++... ..-...+.++.....+.++.+.+.+++||||||||||. ..- ..+
T Consensus 94 ~~~~~~~~~~~l~~~l~~~l-~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~ 172 (329)
T 2woo_A 94 QEMTEQADQQNPNNPLSGMM-QDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLG 172 (329)
T ss_dssp HHHHHTC--------CCHHH-HHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 000 11 111000 00011234444444566776666667999999999993 210 000
Q ss_pred ----------hh-------------------------------hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCE
Q 014511 194 ----------TL-------------------------------CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPC 232 (423)
Q Consensus 194 ----------~~-------------------------------~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~ 232 (423)
.. .+....+.+++|++|+..++.++.++++.+++.++++
T Consensus 173 ~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v 252 (329)
T 2woo_A 173 GLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDT 252 (329)
T ss_dssp TSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCC
Confidence 00 0000134799999999999999999999999999999
Q ss_pred EEEEEecccccCC-Cce----eeccCCChHHHHHHHhCCCeEEeecCc
Q 014511 233 IAVVENMCHFDAD-GKR----YYPFGRGSGSQVVQQFGIPHLFDLPIR 275 (423)
Q Consensus 233 ~gvV~N~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~ip~~ 275 (423)
.|+|+||+.+... ... ....+...++++.+.++...+..+|..
T Consensus 253 ~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~ 300 (329)
T 2woo_A 253 HNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQV 300 (329)
T ss_dssp EEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred CEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 9999999874211 000 001233456778888865455778864
No 32
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=99.87 E-value=1.1e-22 Score=198.36 Aligned_cols=88 Identities=16% Similarity=0.086 Sum_probs=84.1
Q ss_pred eeeeccCCcEEEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCCeeEEEEcCCCCcc
Q 014511 322 AVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQ 401 (423)
Q Consensus 322 ~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dgh~s 401 (423)
.++.....+.|.|.|+||.+ +.|+++||||||||++|+|+.|+||++++.++|.++++.++.++| |+|+|.|+|||.|
T Consensus 8 ~~~~~~~~~~l~v~w~dG~~-~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~-~~l~i~w~dgH~s 85 (388)
T 3o2g_A 8 KAEALDGAHLMQILWYDEEE-SLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR-KKVYITWPDEHYS 85 (388)
T ss_dssp EEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCSTTTEEGGGTEECCCGGGCCTTCCCSEEEECS-SEEEEECTTSCEE
T ss_pred eeeecCCCCEEEEEECCCCe-eeeCHHHHHhcCCCccccCccccccccCHhhcCcccccceEEeeC-CEEEEEecCCCce
Confidence 56777888999999999999 899999999999999999999999999999999999999999998 7999999999999
Q ss_pred cCChHHHHhh
Q 014511 402 IAPYDQLQTM 411 (423)
Q Consensus 402 ~y~~~~L~~~ 411 (423)
+|+|+||+++
T Consensus 86 ~y~~~~L~~~ 95 (388)
T 3o2g_A 86 EFQADWLKKR 95 (388)
T ss_dssp EEEHHHHHHT
T ss_pred EeCHHHHHhh
Confidence 9999999987
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.87 E-value=8.5e-22 Score=178.31 Aligned_cols=197 Identities=13% Similarity=0.048 Sum_probs=121.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc-CCCCC---c-ccccCCCCCceeeeccCCceE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPEN---R-LLEMNPEKRTIIPTEYLGVKL 143 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~-~~~~~---~-~~~~~~~~~~i~~~~~~~l~~ 143 (423)
+|+|+|+|+||||||||+|+|||.+|+++|+||+++| ||+...... .+... . ......... .....+..+
T Consensus 1 ~k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~ 75 (224)
T 1byi_A 1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQL---DYATVNPYT 75 (224)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCC---CHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCC---ChhhcccEE
Confidence 3799999999999999999999999999999999965 554322111 01000 0 000000000 000001122
Q ss_pred EcCCCCCCccccc-CCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh---hhhhhhcC--CCeEEEEeCCCcchHHH
Q 014511 144 VSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQVVP--LTAAVIVTTPQKLAFID 217 (423)
Q Consensus 144 l~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~---~~~~~~~~--~d~~iiv~~p~~~s~~~ 217 (423)
++.+........+ ..+.....+.++++.+. ++||||||||||+++... +..+.+.+ .+.+++|+.+...++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~ 154 (224)
T 1byi_A 76 FAEPTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINH 154 (224)
T ss_dssp ESSCSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHH
T ss_pred eCCCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHH
Confidence 2211110000000 00112345566666554 789999999999987421 11111111 13488899999889999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchh
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 277 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~ 277 (423)
+.+.++.+++.+.++.|+|+||+..... ..++..+.+.+.++.++++.||++..
T Consensus 155 ~~~~i~~l~~~~~~i~gvvlN~~~~~~~------~~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 155 AMLTAQVIQHAGLTLAGWVANDVTPPGK------RHAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCSSCCT------THHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred HHHHHHHHHHCCCcEEEEEEeCCCCchh------hHHHHHHHHHHHcCCCEEEECCCCcC
Confidence 9999999988889999999999754321 12346778888899999999999874
No 34
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.86 E-value=1.2e-22 Score=194.77 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=114.3
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCcccCCCCCc-----------ccccCCCCC-
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENR-----------LLEMNPEKR- 131 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~~~~~~~~~~~~~-----------~~~~~~~~~- 131 (423)
.+..+.|+|+|+||||||||+|+|||..|| +.|+||++||+|++. ++..+||.... +........
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~-~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~ 92 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH-NLSDAFCQKFGKDARKVEGLPNLSCMEIDPEA 92 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC-HHHHHHTSCCCSSCEEETTEEEEEEEECCC--
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC-ChHHHhccccCCCceeccCCCCceEEeeCHHH
Confidence 344567788889999999999999999999 899999999999864 66666664311 000000000
Q ss_pred ---ceeee-------ccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccC------------CCcEEEEcCCCCCC
Q 014511 132 ---TIIPT-------EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG------------ELDYLVIDMPPGTG 189 (423)
Q Consensus 132 ---~i~~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~yD~iiiD~pp~~~ 189 (423)
..... ...++..+. ......+.+..-...+.++++.+.+. +||+|||||||...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~ 168 (348)
T 3io3_A 93 AMSDLQQQASQYNNDPNDPLKSMM----SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGH 168 (348)
T ss_dssp -------------------------------------------------------------------CCEEEEECSSHHH
T ss_pred HHHHHHHHHHhhcccccccHhHHh----HHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchH
Confidence 00000 000011110 00001112222222444444444332 89999999999432
Q ss_pred hhhhhh---------------------------------------------------hhhcCCCeEEEEeCCCcchHHHH
Q 014511 190 DIQLTL---------------------------------------------------CQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 190 ~~~~~~---------------------------------------------------~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
...+.. ..-...+.+++|++|+..++.++
T Consensus 169 tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea 248 (348)
T 3io3_A 169 TLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYET 248 (348)
T ss_dssp HHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHH
Confidence 111000 00011368999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccC-C--Cc----eeeccCCChHHHHHHHhCCCeEEeecCc
Q 014511 219 AKGVRMFSKLKVPCIAVVENMCHFDA-D--GK----RYYPFGRGSGSQVVQQFGIPHLFDLPIR 275 (423)
Q Consensus 219 ~~~~~~l~~~~~~~~gvV~N~~~~~~-~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ip~~ 275 (423)
.++++.+++.++++.|+|+||+.+.. . .. ..+..++..++++.+.|+...+..+|..
T Consensus 249 ~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~ 312 (348)
T 3io3_A 249 ERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLL 312 (348)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCC
Confidence 99999999999999999999987633 1 00 0011234567778888865556677764
No 35
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.82 E-value=2.4e-19 Score=172.97 Aligned_cols=267 Identities=17% Similarity=0.174 Sum_probs=153.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEc----
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS---- 145 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~---- 145 (423)
+.|.++|+||||||||+|+|||..||++|+||++||+ ++. ++..+||...... ...+ .+|++.+.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~-~l~~~~~~~~~~~-----~~~v----~~~L~~~eid~~ 70 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEP-VLPLLLEQTLTPD-----PQQI----APNLEVVQFQSS 70 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCS-HHHHHHTSCCCSS-----CEEE----ETTEEEEECCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCC-ChHHhhCCCCCCC-----cccc----cccccccccCHH
Confidence 4667888999999999999999999999999999999 754 6776666541100 0000 12222221
Q ss_pred -------------------CC-CC---CCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh---------
Q 014511 146 -------------------FG-FS---GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------- 193 (423)
Q Consensus 146 -------------------~~-~~---~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~--------- 193 (423)
.. .. ......+.+..-...+..+.+...+.+||+|||||||......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~ 150 (374)
T 3igf_A 71 VLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSW 150 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHH
Confidence 00 00 11111222322223344444444457899999999994321000
Q ss_pred --------------------------------------------------------hhhhhcCCCeEEEEeCCCcchHHH
Q 014511 194 --------------------------------------------------------TLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 194 --------------------------------------------------------~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
....-.....+++|++|+..++.+
T Consensus 151 ~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~e 230 (374)
T 3igf_A 151 YVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVS 230 (374)
T ss_dssp HHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHH
Confidence 000000125789999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHH
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 297 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~ 297 (423)
+.++++.+++.++++.|+|+|| .+ ..+++.+.|....+..+|.... +
T Consensus 231 a~r~~~~L~~~gi~v~gvVvN~--~~------------~l~~i~~~F~~~~v~~vpl~~~----------------e--- 277 (374)
T 3igf_A 231 VRYLWGSAQQIGLTIGGVIQVS--SQ------------TEGDLSAEFTPLSVTVVPDVTK----------------G--- 277 (374)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC--CS------------CCCCCGGGSTTSCEEECCCCBT----------------T---
T ss_pred HHHHHHHHHHcCCCccEEEEcC--HH------------HHHHHHHhcCCCceEECCCCCh----------------h---
Confidence 9999999999999999999999 11 1334555665445666775321 0
Q ss_pred HHHHHHHHHHHHHHHH-HhcccccceeeeccCCcEEEEEeCCCCc----------eEeechhhhhcCCCCCCcccCCCCc
Q 014511 298 ANTFQDLGVCVVQQCA-KIRQQVSTAVIYDKSIKAIKVKVPQSDE----------EFFLHPATVRRNDRSAQSVDEWTGD 366 (423)
Q Consensus 298 ~~~~~~la~~i~~~~~-~~~~~~~~~~~~~~~~~~l~v~~~d~~~----------~~~~~~~~LR~~c~c~~c~~~~t~~ 366 (423)
.+.++++.+ .... .. ...+..+.+++....+.+..|.-.. +..+..-..|.+
T Consensus 278 --~l~~l~~~l-~~p~~~~-~~~~~~~~i~~~~~~~~l~lP~~~~~~~~l~~~gdeL~v~~g~~rR~------------- 340 (374)
T 3igf_A 278 --DWQPLIDAL-PNFVEQA-EQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRN------------- 340 (374)
T ss_dssp --BCHHHHHHC-CCHHHHH-HHSCCSEEEETTTTEEEEECTTCCGGGCEEEEETTEEEEEETTEEEE-------------
T ss_pred --HHHHHHHHh-cCccccc-cCCCCCEEEEeccEEEEEECCCCCHHHeEEEEECCeEEEEECCEeec-------------
Confidence 233333333 1111 11 1223345555556667777764332 133333233322
Q ss_pred ccccCCCCCCCCceeeEEEeCCeeEEEEcCCCCc
Q 014511 367 QKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFS 400 (423)
Q Consensus 367 r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dgh~ 400 (423)
+.+-..=..-.+..+...++| |.|.|-+.|.
T Consensus 341 --i~LP~~L~~~~v~~A~~~~~~-L~i~~~~~~~ 371 (374)
T 3igf_A 341 --IFLPPALSGRPITGAKFQNNY-LIISFLEHHH 371 (374)
T ss_dssp --EECCTTTTTCCEEEEEEETTE-EEEEECCC--
T ss_pred --ccCCHHHcCCCccccEEECCE-EEEEEehhcc
Confidence 222122124557777888875 9999987763
No 36
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.77 E-value=1.7e-19 Score=186.18 Aligned_cols=165 Identities=20% Similarity=0.167 Sum_probs=106.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC-
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF- 148 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~- 148 (423)
+.|.|+|+||||||||+|+|||..||++|+||++||+|++ +++...||.+..... ......+|+..+....
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~-------~~v~~~~~l~~~~~d~~ 79 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTI-------QAIASVPGLSALEIDPQ 79 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSC-------EECTTSTTEEEEECCHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCC-------ceeccchhhhhccCCHH
Confidence 3455888999999999999999999999999999999996 788888876532100 0000112222221110
Q ss_pred -----------------CCCc-----ccccCCch-----HHHHHHHHHH--hcccCCCcEEEEcCCCCCChhhhh-----
Q 014511 149 -----------------SGQG-----RAIMRGPM-----VSGVINQLLT--TTEWGELDYLVIDMPPGTGDIQLT----- 194 (423)
Q Consensus 149 -----------------~~~~-----~~~~~~~~-----~~~~l~~ll~--~~~~~~yD~iiiD~pp~~~~~~~~----- 194 (423)
.... ...+.++. ....+.++++ .+ +.+||+|||||||+.....+.
T Consensus 80 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l-~~~yD~VIiDt~P~~~~lrll~lP~~ 158 (589)
T 1ihu_A 80 AAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL-LTRFDHIIFDTAPTGHTIRLLQLPGA 158 (589)
T ss_dssp HHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTH-HHHCSEEEESSCCCHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhh-cccCCEEEECCCCchhHHHHHHhHHH
Confidence 0000 00011110 1233555555 22 367999999999963221100
Q ss_pred ------------------------------h---hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 014511 195 ------------------------------L---CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 195 ------------------------------~---~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 241 (423)
. ......+.+++|++|+..++..+.++++.+++.+++..|+|+|++.
T Consensus 159 ~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 159 WSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp GTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred HHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 0 0000123699999999999999999999999999999999999976
Q ss_pred cc
Q 014511 242 FD 243 (423)
Q Consensus 242 ~~ 243 (423)
..
T Consensus 239 ~~ 240 (589)
T 1ihu_A 239 PK 240 (589)
T ss_dssp CG
T ss_pred Cc
Confidence 44
No 37
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.76 E-value=4.1e-19 Score=183.30 Aligned_cols=205 Identities=19% Similarity=0.167 Sum_probs=121.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC-ccc--ccCCC------CCceeeec
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLL--EMNPE------KRTIIPTE 137 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~-~~~--~~~~~------~~~i~~~~ 137 (423)
.+.++|.|+++||||||||+|+|||..|+++|+||++||+|+++ ++..+++... ... ..... ...+....
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~-~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA-HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc-cHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999995 5666665421 110 00000 00011110
Q ss_pred cCCceEEcCCCCCCcccccCCchH--HHHHHHHHHhcccCCCcEEEEcCCCCCC--------------------hhh--h
Q 014511 138 YLGVKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTG--------------------DIQ--L 193 (423)
Q Consensus 138 ~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~yD~iiiD~pp~~~--------------------~~~--~ 193 (423)
..+++. .+. ......+..+.. ...++.+.+.+.+.+||||||||||+.. +.. .
T Consensus 403 ~~~l~~--~~~-~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~ 479 (589)
T 1ihu_A 403 GKELDE--AGK-RLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFT 479 (589)
T ss_dssp HTTCCH--HHH-HHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------
T ss_pred hccCCh--hhH-HHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHH
Confidence 011110 000 000011222221 2245555555445679999999999832 110 0
Q ss_pred hhh-hh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcee-----eccCCChHHHHHHHhC
Q 014511 194 TLC-QV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY-----YPFGRGSGSQVVQQFG 265 (423)
Q Consensus 194 ~~~-~~--~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 265 (423)
... .+ ..++.+++|++|+..++.++.++++.+++.+++..|+|+|++...+..... .......++++.+.|+
T Consensus 480 ~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 559 (589)
T 1ihu_A 480 TPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHA 559 (589)
T ss_dssp CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 000 01 135889999999999999999999999999999999999998764321100 0112234567777787
Q ss_pred CCeEEeecCch
Q 014511 266 IPHLFDLPIRP 276 (423)
Q Consensus 266 ~~~~~~ip~~~ 276 (423)
.++ ..+|+.+
T Consensus 560 ~~v-~~iP~~~ 569 (589)
T 1ihu_A 560 SRV-ALVPVLA 569 (589)
T ss_dssp SSE-EEEECCS
T ss_pred CcE-EEccCCC
Confidence 665 7788754
No 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.69 E-value=1.2e-16 Score=157.56 Aligned_cols=167 Identities=20% Similarity=0.245 Sum_probs=108.5
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
+.+++|+|+ ++||+||||++.+||.+|+++ |+||++||+|+|++.....+. ......|+++++
T Consensus 98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~---------------~~~~~~~l~v~~ 161 (433)
T 2xxa_A 98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE---------------TLAEQVGVDFFP 161 (433)
T ss_dssp SSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH---------------HHHHHHTCEECC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH---------------hhcccCCeeEEe
Confidence 456899998 799999999999999999999 999999999999875422110 012235788887
Q ss_pred CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh--hhhh----hhhhcCCCeEEEEeCCCcchHHHHH
Q 014511 146 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~--~~~~----~~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
.+... .....+...++.+.+.+||||||||||..+. .... +......+.+++|+.+... .++.
T Consensus 162 ~~~~~---------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g--~~~~ 230 (433)
T 2xxa_A 162 SDVGQ---------KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAA 230 (433)
T ss_dssp CCSSS---------CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC--TTHH
T ss_pred CCCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh--HHHH
Confidence 65421 1122334455544346899999999987652 1111 1113356788888776532 2333
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 269 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
...+.+.. ++++.|+|+|++...... +....+.+.++.|+.
T Consensus 231 ~~~~~f~~-~l~i~gvVlnK~D~~~~~--------g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 231 NTAKAFNE-ALPLTGVVLTKVDGDARG--------GAALSIRHITGKPIK 271 (433)
T ss_dssp HHHHHHHH-HSCCCCEEEECTTSSSCC--------THHHHHHHHHCCCEE
T ss_pred HHHHHHhc-cCCCeEEEEecCCCCccH--------HHHHHHHHHHCCCeE
Confidence 44444432 356689999997544322 355678888887754
No 39
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.62 E-value=1.2e-15 Score=143.35 Aligned_cols=166 Identities=19% Similarity=0.243 Sum_probs=108.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
+++|++. +++|+||||++.+||..++.+|++|+++|+|++++.....+.. .....|+++++...
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~---------------~~~~~~v~v~~~~~ 161 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ---------------LGQQIGVPVYGEPG 161 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH---------------HHHHHTCCEECCTT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH---------------HhccCCeEEEecCC
Confidence 6788887 7999999999999999999999999999999998754321100 01123677776432
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hh-hhh-----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DI-QLT-----LCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~-~~~-----~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
. ......+.+.++.+.+.+||||||||||... .. .+. +.....+|.+++|+.+.. . .++..
T Consensus 162 ~---------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g-~~~~~ 230 (297)
T 1j8m_F 162 E---------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI-G-QKAYD 230 (297)
T ss_dssp C---------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG-G-GGHHH
T ss_pred C---------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc-h-HHHHH
Confidence 1 1222334455555444789999999999776 21 111 112346789999987753 2 33333
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
..+.+.. ..++.|+|+|+++..... +....+...++.|+.+
T Consensus 231 ~~~~~~~-~~~i~gvVlnk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 231 LASKFNQ-ASKIGTIIITKMDGTAKG--------GGALSAVAATGATIKF 271 (297)
T ss_dssp HHHHHHH-TCTTEEEEEECGGGCTTH--------HHHHHHHHTTTCCEEE
T ss_pred HHHHHHh-hCCCCEEEEeCCCCCcch--------HHHHHHHHHHCcCEEE
Confidence 4444444 467799999997543321 2455678888887654
No 40
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.59 E-value=1.1e-14 Score=138.03 Aligned_cols=172 Identities=20% Similarity=0.212 Sum_probs=104.9
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
..+++|+|++. +|+||||++.+||..++..|++|+++|+|++++.....+ ..... .....++.++|.
T Consensus 103 ~~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql------~~~~~------~~~~~~l~vip~ 169 (320)
T 1zu4_A 103 NRLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQL------EEWIK------TRLNNKVDLVKA 169 (320)
T ss_dssp TSCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHH------HHHHT------TTSCTTEEEECC
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHH------HHHHh------ccccCCceEEeC
Confidence 34689999965 999999999999999999999999999999875321000 00000 001457888865
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--hhhhh----hh------cCCCeEEEEeCCCcch
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QLTLC----QV------VPLTAAVIVTTPQKLA 214 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--~~~~~----~~------~~~d~~iiv~~p~~~s 214 (423)
+..... +. ....+.+.... ..+||||||||||..... .+... .. ...|.+++|+.+.. .
T Consensus 170 ~~~~~~------p~-~~~~~~l~~~~-~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~ 240 (320)
T 1zu4_A 170 NKLNAD------PA-SVVFDAIKKAK-EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-G 240 (320)
T ss_dssp SSTTCC------HH-HHHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-T
T ss_pred CCCCCC------HH-HHHHHHHHHHH-hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-c
Confidence 432211 10 11222332222 378999999999987632 11100 01 12578888877662 3
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 215 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
...+..+ +.+.. ..++.|+|+|++.....+ +....+...++.|+.+
T Consensus 241 ~~~l~~~-~~~~~-~~~i~GvVltk~d~~~~~--------g~~~~~~~~~~~Pi~~ 286 (320)
T 1zu4_A 241 QNGVIQA-EEFSK-VADVSGIILTKMDSTSKG--------GIGLAIKELLNIPIKM 286 (320)
T ss_dssp HHHHHHH-HHHTT-TSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEE
T ss_pred HHHHHHH-HHHhh-cCCCcEEEEeCCCCCCch--------hHHHHHHHHHCcCEEE
Confidence 3333333 23332 256789999997643322 3567788889988643
No 41
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.57 E-value=9.6e-15 Score=137.15 Aligned_cols=167 Identities=20% Similarity=0.199 Sum_probs=106.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.+++|+++ +++|+||||++.+||..++..|.+|+++|+|++++.....++. .....|+++++.+
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~---------------~~~~~~l~~~~~~ 160 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL---------------LGEKVGVPVLEVM 160 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH---------------HHHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHH---------------hcccCCeEEEEcC
Confidence 56899998 8999999999999999999999999999999998644321110 0122467777754
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhh------hhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLC------QVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~------~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
.... ....++..++.+...+||+|||||||..+.....+. .....+.+++|+.+.. . .++...
T Consensus 161 ~~~~---------p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~~ 229 (295)
T 1ls1_A 161 DGES---------PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (295)
T ss_dssp TTCC---------HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHHH
T ss_pred CCCC---------HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHHH
Confidence 3211 112223344433226899999999987653111111 1224677888877653 2 333333
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.+.+.. ..++.|+|+|+++..... +..-.+...+|.|+.+
T Consensus 230 ~~~~~~-~~~i~givlnk~d~~~~~--------g~~~~~~~~~~~pi~~ 269 (295)
T 1ls1_A 230 ARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (295)
T ss_dssp HHHHHH-HTCCCEEEEECGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred HHHHhh-cCCCCEEEEECCCCCccH--------HHHHHHHHHHCcCEEE
Confidence 343332 256789999997654322 3456777888988664
No 42
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.56 E-value=4.7e-15 Score=133.87 Aligned_cols=194 Identities=10% Similarity=0.058 Sum_probs=118.2
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc-CCC--CCcccccCCCCCceeeeccCCceE
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSP--ENRLLEMNPEKRTIIPTEYLGVKL 143 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~-~~~--~~~~~~~~~~~~~i~~~~~~~l~~ 143 (423)
+.||.|.|++...|+||||+|++|+..|+++|+||..+- |........ -+. .+......... .+....+...
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~~~~~~~~~D~~~~~~~~~---~~~~~~~~~~ 76 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQFSELCEDVESILNAYKHK---FTAAEINLIS 76 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCSSSSSBHHHHHHHHHTTTS---SCHHHHCSEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCccCCCCCChHHHHHHhcCCC---CChhhEEEEE
Confidence 357899999999999999999999999999999999964 211000000 000 00000000000 0000012233
Q ss_pred EcCCCCCCcccccCC-chHHHHHHHHHHh-cccCCCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchH
Q 014511 144 VSFGFSGQGRAIMRG-PMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 144 l~~~~~~~~~~~~~~-~~~~~~l~~ll~~-~~~~~yD~iiiD~pp~~~~~------~~~~~~~~~~d~~iiv~~p~~~s~ 215 (423)
+.............+ ......+.+.++. +. .+||++|||+++|+... ...++... ..-+++|+.+...++
T Consensus 77 ~~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l-~~pviLV~~~~~~~i 154 (228)
T 3of5_A 77 FNQAVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL-QIPVLLVSAIKVGCI 154 (228)
T ss_dssp ESSSSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH-TCCEEEEEECSTTHH
T ss_pred ECCCCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHc-CCCEEEEEcCCcchH
Confidence 322211111111111 1122345555555 43 79999999999876432 11111111 244889999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeec
Q 014511 216 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 273 (423)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 273 (423)
..+...++.+++.+.++.|+|+|++..+.. ......+.+++.+|+|+++.||
T Consensus 155 ~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~------~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 155 NHTLLTINELNRHNIKLAGWIANCNDSNIK------YIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEECCTTCS------CHHHHHHHHHHHHSCCCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEEECcCCcch------hhHHHHHHHHHhhCCCEEEECC
Confidence 999999999999999999999999654321 1124577888889999999999
No 43
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.51 E-value=4.6e-14 Score=138.07 Aligned_cols=167 Identities=20% Similarity=0.201 Sum_probs=107.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.+++|+++ +++|+||||++.+||..++..|++|+++|+|++.++....+.. .....|+++++.+
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~---------------~~~~~gv~v~~~~ 160 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL---------------LGEKVGVPVLEVM 160 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH---------------HHHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH---------------hcccCCccEEecC
Confidence 46789988 7899999999999999999999999999999998754321110 0122467788765
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--hhh----hhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QLT----LCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--~~~----~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
... .....+...++.+....||+|||||||..+.. .+. +......|.+++|+.+.. . .++...
T Consensus 161 ~~~---------~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t-g-q~av~~ 229 (425)
T 2ffh_A 161 DGE---------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (425)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-THHHHH
T ss_pred CCC---------CHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc-h-HHHHHH
Confidence 321 11122344444432378999999999976521 111 111234688888887643 2 333344
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.+.+.. .+++.|+|+|+++....+ +....+...+|.|+.+
T Consensus 230 a~~f~~-~l~i~GVIlTKlD~~~~~--------g~alsi~~~~g~PI~f 269 (425)
T 2ffh_A 230 ARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (425)
T ss_dssp HHHHHH-HTCCCEEEEESGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred HHHHHh-cCCceEEEEeCcCCcccH--------HHHHHHHHHHCCCEEE
Confidence 444432 255689999997544322 2455677888888543
No 44
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=3.4e-14 Score=131.22 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=42.9
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 114 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~ 114 (423)
.+..++++.++||||||||++.|||..|+ +|+||++||+|+|++.+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~ 57 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP 57 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC
Confidence 45578999999999999999999999999 999999999999987653
No 45
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.44 E-value=8.2e-13 Score=120.45 Aligned_cols=193 Identities=15% Similarity=0.081 Sum_probs=115.6
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
+.|+.|.|++...|+|||++++.|+.+|+++|+||..+--=..+.. .. +.+........... .. .+...+..
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~-~~--~~D~~~~~~~~g~~---~~--~~~~~~~~ 95 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTA-RG--DDDLAEVGRLAGVT---QL--AGLARYPQ 95 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGG-GT--CCHHHHHHHHHCCC---EE--EEEEECSS
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCC-CC--CHHHHHHHHHcCCC---CC--CCCeeECC
Confidence 4679999999999999999999999999999999999762111100 00 00000000000000 00 01112211
Q ss_pred CCCCCcccccCC--chHHHHHHHHHHhcccCCCcEEEEcCCCCCChh-------hhhhhhhcCCCeEEEEeCCCcchHHH
Q 014511 147 GFSGQGRAIMRG--PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 147 ~~~~~~~~~~~~--~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~-------~~~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
...........+ ......+.+.++.+. ..||++|||+++|+.+. ...++.. ...-+++|+.+...++..
T Consensus 96 p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~-l~~pVILV~~~~~g~i~~ 173 (251)
T 3fgn_A 96 PMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVD-VAAAALVVVTADLGTLNH 173 (251)
T ss_dssp SSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHH-TTCEEEEEECSSTTHHHH
T ss_pred CCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHH-cCCCEEEEEcCCCccHHH
Confidence 111000010111 112334566666554 78999999999987421 1112111 235689999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCch
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 276 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 276 (423)
+...++.++..+.++.|+|+|++..+... ......+.+++. +|+++.||++.
T Consensus 174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~-----~~~~~~~~le~~--vpvLG~iP~~~ 225 (251)
T 3fgn_A 174 TKLTLEALAAQQVSCAGLVIGSWPDPPGL-----VAASNRSALARI--AMVRAALPAGA 225 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSCCH-----HHHHHHHHHHHH--SCEEEEEETTG
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCCchhh-----hhhhHHHHHHHh--CCEEEEeeCCC
Confidence 98899999888999999999996432210 011234445544 99999999875
No 46
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.44 E-value=7.1e-13 Score=129.79 Aligned_cols=167 Identities=15% Similarity=0.187 Sum_probs=101.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.+++|+++ |.+|+||||++.+||.+|+++|+||+++|+|++.+.....+. ......++.+.+..
T Consensus 99 ~p~vIliv-G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~---------------~~~~~~gvpv~~~~ 162 (443)
T 3dm5_A 99 KPTILLMV-GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLR---------------QLLDRYHIEVFGNP 162 (443)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHH---------------HHHGGGTCEEECCT
T ss_pred CCeEEEEE-CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH---------------HHHHhcCCcEEecC
Confidence 45788887 559999999999999999999999999999998864211100 01112244444322
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--hh----hhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL----TLCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--~~----~~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
.. ......+...++......||+|||||++..... .. .+......|.+++|+.+.. + .++...
T Consensus 163 ~~---------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~-g-q~a~~~ 231 (443)
T 3dm5_A 163 QE---------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTI-G-QQAYNQ 231 (443)
T ss_dssp TC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-G-GGHHHH
T ss_pred CC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCC-c-hhHHHH
Confidence 11 112233344444444467999999999855321 11 1112234578888877654 2 223334
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.+.+.+ ..++.|+|+|+++....+ +....+...++.|+.+
T Consensus 232 a~~f~~-~~~i~gVIlTKlD~~~~g--------G~~ls~~~~~g~PI~f 271 (443)
T 3dm5_A 232 ALAFKE-ATPIGSIIVTKLDGSAKG--------GGALSAVAATGAPIKF 271 (443)
T ss_dssp HHHHHH-SCTTEEEEEECCSSCSSH--------HHHHHHHHTTCCCEEE
T ss_pred HHHHHh-hCCCeEEEEECCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 455543 245689999997544322 2455666778888653
No 47
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.43 E-value=1.5e-12 Score=128.11 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=102.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.+++|+|++ .+|+||||++.+||..++++|+||+++|+|+|++.....+.. .....|+.+++.+
T Consensus 98 ~~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~---------------~~~~~gv~v~~~~ 161 (432)
T 2v3c_C 98 KQNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQ---------------LAEKIHVPIYGDE 161 (432)
T ss_dssp SCCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHH---------------HHHHSSCCEECCS
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHH---------------hhhccCcceEecC
Confidence 346888885 699999999999999999999999999999998764322110 0123466777654
Q ss_pred -CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh--hh----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 148 -FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----LCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 148 -~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~--~~----~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
...+.. ..+...+... ..||+|||||||...... +. .......|.+++|+.+... . ++..
T Consensus 162 ~~~~dp~---------~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~-~~~~ 228 (432)
T 2v3c_C 162 TRTKSPV---------DIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q-QAGI 228 (432)
T ss_dssp SSCCSSS---------TTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G-GHHH
T ss_pred CCCCCHH---------HHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H-HHHH
Confidence 111110 1123334443 689999999998765211 11 1122346888888765432 1 2333
Q ss_pred HHHHHHcCCC-CEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 221 GVRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 221 ~~~~l~~~~~-~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
..+.+.. .. ++.++|+|+++..... +....+...++.|+.+
T Consensus 229 ~~~~~~~-~~~~i~gvVlnK~D~~~~~--------g~~l~~~~~~~~pi~~ 270 (432)
T 2v3c_C 229 QAKAFKE-AVGEIGSIIVTKLDGSAKG--------GGALSAVAETKAPIKF 270 (432)
T ss_dssp HHHHHHT-TSCSCEEEEEECSSSCSTT--------HHHHHHHHHSSCCEEE
T ss_pred HHHHHhh-cccCCeEEEEeCCCCccch--------HHHHHHHHHHCCCEEE
Confidence 3344443 35 6789999997543321 2344578888888653
No 48
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.39 E-value=2.5e-12 Score=116.60 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=101.2
Q ss_pred cccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccccc----CCCCCceeeec
Q 014511 62 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NPEKRTIIPTE 137 (423)
Q Consensus 62 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~ 137 (423)
++++..|++.|.|++..+|||||++|+.|+.+|+++|++|..+.- ........-+...+.... ......+....
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP--v~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~ 91 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP--IETGVNDAINHSSDAHLFLQDNRLLDRSLTLKD 91 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC--EECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHH
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee--eecCCcccCCCCchHHHHHHHHHHHhCCCChHH
Confidence 467788999999999999999999999999999999999999852 111110000001000000 00000000000
Q ss_pred cCCceEEcCCCCCCcccccCC---chHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEe
Q 014511 138 YLGVKLVSFGFSGQGRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVT 208 (423)
Q Consensus 138 ~~~l~~l~~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~------~~~~~~~~~d~~iiv~ 208 (423)
-+...+.............+ +.....+.+.++.+. ..||++|||+++|+.... ..++... ..-+++|+
T Consensus 92 -~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l-~~pVILV~ 168 (242)
T 3qxc_A 92 -ISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKL-KAKMLLIS 168 (242)
T ss_dssp -HCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHH-TCEEEEEE
T ss_pred -eeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHc-CCCEEEEE
Confidence 01112211111000000001 112234555555544 789999999999875321 1111111 24589999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 209 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 209 ~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
.+...++..+...++.++..+++ .|+|+|++..+
T Consensus 169 ~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 169 HDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp CCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred cCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 99999999999999999999999 99999997543
No 49
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.38 E-value=1.5e-12 Score=129.99 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=100.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
...++|+|+ +.+||||||++.+||..|+++|++|++||+|++++.....+.. .....++.+++.
T Consensus 99 ~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~---------------~~~~~~i~v~~~ 162 (504)
T 2j37_W 99 GKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQ---------------NATKARIPFYGS 162 (504)
T ss_dssp S--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHH---------------HHHHHTCCEEEC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHH---------------HhhccCceEEcc
Confidence 346789998 6699999999999999999999999999999998754221110 001124555543
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh--hhh-h---hhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL-T---LCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~--~~~-~---~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
.... .....+...++.+.+..||++||||||.... ... . .......|.+++|+.+... .. ...
T Consensus 163 ~~~~---------dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g-~~-~~~ 231 (504)
T 2j37_W 163 YTEM---------DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG-QA-CEA 231 (504)
T ss_dssp CCCS---------CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC-TT-HHH
T ss_pred CCCC---------CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc-cc-HHH
Confidence 2211 1112223334433347899999999987642 111 0 1112256888888876542 11 223
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 269 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
..+.+.+. +++.++|+|+++..... +....+.+.+|.|+.
T Consensus 232 ~a~~~~~~-~~i~gvVlNK~D~~~~~--------g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 232 QAKAFKDK-VDVASVIVTKLDGHAKG--------GGALSAVAATKSPII 271 (504)
T ss_dssp HHHHHHHH-HCCCCEEEECTTSCCCC--------THHHHHHHHHCCCEE
T ss_pred HHHHHHhh-cCceEEEEeCCccccch--------HHHHHHHHHhCCCeE
Confidence 33444432 45568999997544321 234457788898864
No 50
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.34 E-value=4.9e-12 Score=123.90 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=100.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.+++|+++ |.+|+||||++.+||..|+.+|++|+++|+|++.+.....+ .......++.+.+..
T Consensus 96 ~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL---------------~~~~~~~gv~~~~~~ 159 (433)
T 3kl4_A 96 LPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQL---------------LQLGNQIGVQVYGEP 159 (433)
T ss_dssp SSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHH---------------HHHHHTTTCCEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHH---------------HHHHHhcCCceeecc
Confidence 45778877 88999999999999999999999999999999875321100 001111233333221
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC---hhhh-----hhhhhcCCCeEEEEeCCCcchHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG---DIQL-----TLCQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~---~~~~-----~~~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
.. ..........++.+.+.+||+||||||+... +..+ .+......+.+++|+.+... .++.
T Consensus 160 ~~---------~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~ 228 (433)
T 3kl4_A 160 NN---------QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAY 228 (433)
T ss_dssp TC---------SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGH
T ss_pred cc---------CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHH
Confidence 11 1122334455555555799999999997543 1110 11112234777887766432 2233
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
...+.+.+ .++..|+|+|+.+...++ +..-.+...++.|+.+
T Consensus 229 ~~a~~f~~-~~~~~gVIlTKlD~~a~~--------G~als~~~~~g~Pi~f 270 (433)
T 3kl4_A 229 DLASRFHQ-ASPIGSVIITKMDGTAKG--------GGALSAVVATGATIKF 270 (433)
T ss_dssp HHHHHHHH-HCSSEEEEEECGGGCSCH--------HHHHHHHHHHTCEEEE
T ss_pred HHHHHHhc-ccCCcEEEEecccccccc--------hHHHHHHHHHCCCEEE
Confidence 34445543 134589999997654422 3455666778887643
No 51
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.32 E-value=1.7e-11 Score=115.17 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=100.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
.++++|++++. +|+||||++.+||..++..|.+|+++|+|++.+.... .+. ......++.+++.
T Consensus 102 ~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~e------qL~---------~~~~~~gl~~~~~ 165 (306)
T 1vma_A 102 EPPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIE------QLK---------IWGERVGATVISH 165 (306)
T ss_dssp SSCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH------HHH---------HHHHHHTCEEECC
T ss_pred CCCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHH------HHH---------HHHHHcCCcEEec
Confidence 45689999975 9999999999999999999999999999998643210 000 0001124556553
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh--hh----hhhh------cCCCeEEEEeCCCcch
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----LCQV------VPLTAAVIVTTPQKLA 214 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~--~~----~~~~------~~~d~~iiv~~p~~~s 214 (423)
.... .........+......+||+||+|+|+...... +. .... ...+.+++|+... ..
T Consensus 166 ~s~~---------~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~ 235 (306)
T 1vma_A 166 SEGA---------DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TG 235 (306)
T ss_dssp STTC---------CHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GH
T ss_pred CCcc---------CHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CC
Confidence 3211 111111111221113789999999998643211 00 0001 1256778887664 33
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 215 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
...+..+ +.+.+ ..++.|+|+|+.+....+ +..-.+...++.|+.+.
T Consensus 236 ~~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~g--------G~~l~~~~~~~~Pi~~i 282 (306)
T 1vma_A 236 QNGLVQA-KIFKE-AVNVTGIILTKLDGTAKG--------GITLAIARELGIPIKFI 282 (306)
T ss_dssp HHHHHHH-HHHHH-HSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEEE
T ss_pred HHHHHHH-HHHHh-cCCCCEEEEeCCCCccch--------HHHHHHHHHHCCCEEEE
Confidence 3333333 33332 256789999997654432 45778889999887654
No 52
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.16 E-value=7e-11 Score=110.70 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=93.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
..++|+|++ .+|+||||++.+||..++. +|++|+++|+|++.+.....+.. .....|+.+...
T Consensus 104 ~g~vi~lvG-~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~---------------~~~~~gl~~~~~ 167 (296)
T 2px0_A 104 HSKYIVLFG-STGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT---------------YAELLQAPLEVC 167 (296)
T ss_dssp CSSEEEEEE-STTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH---------------HHTTTTCCCCBC
T ss_pred CCcEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH---------------HHHhcCCCeEec
Confidence 467999985 5899999999999999995 89999999999986543211100 000012211110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh--h-hhhhhc---CCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVV---PLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~--~-~~~~~~---~~d~~iiv~~p~~~s~~~~~~ 220 (423)
..+ ..++..+..+ .+||+|||||+|...... + .+..+. ..+.+++|+... ....++.+
T Consensus 168 ----------~~~---~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~~~~ 231 (296)
T 2px0_A 168 ----------YTK---EEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYEDMKH 231 (296)
T ss_dssp ----------SSH---HHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHHHHH
T ss_pred ----------CCH---HHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHHHHH
Confidence 001 1234444433 679999999987654211 1 111122 245556665332 23344555
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
..+.+.. ++..|+|+|+.+..... +....+...+|.|+.+
T Consensus 232 ~~~~~~~--l~~~giVltk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (296)
T 2px0_A 232 IVKRFSS--VPVNQYIFTKIDETTSL--------GSVFNILAESKIGVGF 271 (296)
T ss_dssp HTTTTSS--SCCCEEEEECTTTCSCC--------HHHHHHHHTCSCCCSE
T ss_pred HHHHHhc--CCCCEEEEeCCCcccch--------hHHHHHHHHHCcCEEE
Confidence 5554443 45679999996543321 3556677788877654
No 53
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.97 E-value=1.9e-09 Score=103.90 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=82.4
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc-CCCCCcccccCCCCCceeeeccCCceEEc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENRLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
+...+|+|+ |++|+||||++.+|+..++..|+||+++|+|++.+..... ++.... .......+++.+.+
T Consensus 77 ~~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~---------~~~~~~~~~~~i~~ 146 (355)
T 3p32_A 77 GNAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTR---------MARLAVHPNAYIRP 146 (355)
T ss_dssp CCSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------------CHHHHTCTTEEEEC
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhh---------HHhhccCCCeeEEE
Confidence 345677776 7899999999999999999999999999999987642211 110000 00011234666665
Q ss_pred CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHH
Q 014511 146 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF 225 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l 225 (423)
.+....- .......+..+..+....||++|||||+ +....... ...+|.+++|+.++..... ..+...+
T Consensus 147 ~~~~~~~------~~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~--~~~aD~vl~V~d~~~~~~~--~~l~~~~ 215 (355)
T 3p32_A 147 SPTSGTL------GGVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAV--ANMVDTFVLLTLARTGDQL--QGIKKGV 215 (355)
T ss_dssp CC--CCH------HHHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHH--HTTCSEEEEEEESSTTCTT--TTCCTTS
T ss_pred CCCCccc------cchhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHH--HHhCCEEEEEECCCCCccH--HHHHHhH
Confidence 4432110 0112222233333334789999999975 55433333 3467999999887643211 0000001
Q ss_pred HcCCCCEEEEEEecccc
Q 014511 226 SKLKVPCIAVVENMCHF 242 (423)
Q Consensus 226 ~~~~~~~~gvV~N~~~~ 242 (423)
.+.+ ..+|+||++.
T Consensus 216 --~~~p-~ivVlNK~Dl 229 (355)
T 3p32_A 216 --LELA-DIVVVNKADG 229 (355)
T ss_dssp --GGGC-SEEEEECCCG
T ss_pred --hhcC-CEEEEECCCC
Confidence 1123 4678899764
No 54
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.89 E-value=2.1e-09 Score=95.40 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=41.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 113 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~ 113 (423)
.++...|.++||||||||++.|+|..++++|++|+++|+|+|+.+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh
Confidence 3467788899999999999999999999999999999999998653
No 55
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.50 E-value=1.2e-06 Score=83.62 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc-cCCCCCcccccCCCCCceeeeccCCceEEc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
....+|+++ |++|+||||+..+|+..++..|.+|.++|.|++.+.... +++........ ...++..+.+
T Consensus 54 ~~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~---------~~~~~~~i~~ 123 (341)
T 2p67_A 54 GNTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL---------ARAEAAFIRP 123 (341)
T ss_dssp SCSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTT---------TTCTTEEEEE
T ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhh---------ccCCCceeec
Confidence 345788887 699999999999999999999999999999998754321 12211100000 0001222222
Q ss_pred CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 014511 146 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 212 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~ 212 (423)
..... ..+......++.+. .+.+..|+++|+|||+-.. ....+ ...+|.+++|+.+..
T Consensus 124 ~~~~~-----~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG~~~-~~~~~--~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 124 VPSSG-----HLGGASQRARELML-LCEAAGYDVVIVETVGVGQ-SETEV--ARMVDCFISLQIAGG 181 (341)
T ss_dssp ECC----------CHHHHHHHHHH-HHHHTTCSEEEEEEECCTT-HHHHH--HTTCSEEEEEECC--
T ss_pred Ccccc-----ccchhHHHHHHHHH-HhhccCCCEEEEeCCCccc-hHHHH--HHhCCEEEEEEeCCc
Confidence 11100 01111112222222 2224789999999976433 22222 356799999998854
No 56
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.38 E-value=3.3e-06 Score=79.90 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=95.8
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
..+.+|++. |..|+||||+...||..+...|.+|++++.|.+....... .......-++.+++.
T Consensus 127 ~~g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eq---------------l~~~~~~~gv~~v~q 190 (328)
T 3e70_C 127 EKPYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQ---------------LEEHAKRIGVKVIKH 190 (328)
T ss_dssp CSSEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHH---------------HHHHHHHTTCEEECC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHH---------------HHHHHHHcCceEEec
Confidence 346788888 6699999999999999999999999999999876431100 000011123444432
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh--h----hhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~--~----~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
....... ......+.... ...||++++|+++...... + .+......|..+++..+... .++..
T Consensus 191 ~~~~~p~-----~~v~e~l~~~~----~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~ 259 (328)
T 3e70_C 191 SYGADPA-----AVAYDAIQHAK----ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVE 259 (328)
T ss_dssp CTTCCHH-----HHHHHHHHHHH----HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHH
T ss_pred cccCCHH-----HHHHHHHHHHH----hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHH
Confidence 2111100 01111222211 2579999999987643111 1 11122345777777664332 33444
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.+..+.+ ...+.++|+|+.+..... +..-.+...++.|+.+.
T Consensus 260 ~~~~~~~-~~~it~iilTKlD~~a~~--------G~~l~~~~~~~~pi~~i 301 (328)
T 3e70_C 260 QARQFNE-AVKIDGIILTKLDADARG--------GAALSISYVIDAPILFV 301 (328)
T ss_dssp HHHHHHH-HSCCCEEEEECGGGCSCC--------HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHH-hcCCCEEEEeCcCCccch--------hHHHHHHHHHCCCEEEE
Confidence 4444432 134468999996543322 34557778888886653
No 57
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=98.33 E-value=6.2e-07 Score=70.33 Aligned_cols=52 Identities=17% Similarity=0.407 Sum_probs=47.8
Q ss_pred eEEEeC-CEEEEEEEecCCCCchhHHHHHHHHHHH-hcCCCeeeEEEEEEeecC
Q 014511 2 QINEAL-GEVSFRLELTTPACPIKDMFEQRANEVV-LAIPWVNKVNVTMSAQPA 53 (423)
Q Consensus 2 ~i~~~~-~~v~i~l~lt~~~cp~~~~i~~~v~~~l-~~i~~v~~v~i~l~~~~~ 53 (423)
+|.+++ |+|+|+|+||+|+||..+.+.++++.+| ..++|++++++.++++|+
T Consensus 37 ~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~ 90 (108)
T 3lno_A 37 DVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWNPP 90 (108)
T ss_dssp EEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCSSC
T ss_pred EEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEecCC
Confidence 467775 8999999999999999999999999999 999999999999998775
No 58
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=98.33 E-value=7.3e-07 Score=69.36 Aligned_cols=52 Identities=25% Similarity=0.502 Sum_probs=47.9
Q ss_pred eEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEEEEEeecC
Q 014511 2 QINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPA 53 (423)
Q Consensus 2 ~i~~~~~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~ 53 (423)
+|.+++++|+|+|+||+|+||..+.+.++++++|..++|++++++.++++++
T Consensus 35 ~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~~p~ 86 (103)
T 3cq1_A 35 DLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPP 86 (103)
T ss_dssp EEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECCSSC
T ss_pred EEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEecCCC
Confidence 4777888999999999999999999999999999999999999999887664
No 59
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.32 E-value=6.4e-06 Score=81.42 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=91.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.+.+|+++ |.+|+||||+...||..+...|.+|++.+.|.+...... .+. ......++.+++..
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e------QL~---------~~~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE------QLQ---------VWGQRNNIPVIAQH 355 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH------HHH---------HHHHHHTCCEECCS
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH------HHH---------HHHHhcCceEEecc
Confidence 45789998 779999999999999999988889999999986521000 000 00000123333321
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh-hhh--hhhhh---------cCCCeEEEEeCCCcchH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQL--TLCQV---------VPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~-~~~--~~~~~---------~~~d~~iiv~~p~~~s~ 215 (423)
... .........+... ...+||+|||||++.... ..+ .+.++ ..-+.++++..+...
T Consensus 356 ~~~-----~p~~tV~e~l~~a----~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-- 424 (503)
T 2yhs_A 356 TGA-----DSASVIFDAIQAA----KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-- 424 (503)
T ss_dssp TTC-----CHHHHHHHHHHHH----HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--
T ss_pred cCc-----CHHHHHHHHHHHH----HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--
Confidence 110 0000111222222 236899999999886532 111 00011 013456777665432
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 216 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.++...++.|.+ ...+.++|+|+.+....+ +..-.+...++.|+.+
T Consensus 425 q~al~~ak~f~~-~~~itgvIlTKLD~takg--------G~~lsi~~~~~~PI~f 470 (503)
T 2yhs_A 425 QNAVSQAKLFHE-AVGLTGITLTKLDGTAKG--------GVIFSVADQFGIPIRY 470 (503)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEECGGGCSCC--------THHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHh-hcCCCEEEEEcCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 222233334432 123468999996543322 4677788888988765
No 60
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.32 E-value=1.5e-06 Score=92.52 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=58.7
Q ss_pred CCcEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcee
Q 014511 176 ELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~ 249 (423)
.+|++||....|+.. ....++.... .-+|+|+.....++..+...++.++.-++++.|+|+|+.. .
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~--~----- 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG--L----- 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS--S-----
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc--h-----
Confidence 799999999876532 1222222222 2378888888888888888888888889999999999753 1
Q ss_pred eccCCChHHHHHHH----hCCCeEEeecCch
Q 014511 250 YPFGRGSGSQVVQQ----FGIPHLFDLPIRP 276 (423)
Q Consensus 250 ~~~~~~~~~~~~~~----~~~~~~~~ip~~~ 276 (423)
...+.+.+. .++++++.+|+.+
T Consensus 273 -----~~~~~l~~~l~~~~~v~vLg~lP~~~ 298 (831)
T 4a0g_A 273 -----VNEVPLTSYLRNKVPVLVLPPVPKDP 298 (831)
T ss_dssp -----CTHHHHHHHTTTSSCEEEECCCCCCT
T ss_pred -----hHHHHHHHHHHhCCCceeeCCCCCCC
Confidence 123444443 4555677788754
No 61
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=98.29 E-value=1.2e-06 Score=68.18 Aligned_cols=52 Identities=31% Similarity=0.489 Sum_probs=47.4
Q ss_pred eEEEeC-CEEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEEEEEeecC
Q 014511 2 QINEAL-GEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPA 53 (423)
Q Consensus 2 ~i~~~~-~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~ 53 (423)
+|.+++ |+|+|.|+||+|+||..+.+.++++++|..++|++++++.++++++
T Consensus 35 ~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~~~p~ 87 (103)
T 1uwd_A 35 DIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTFDPP 87 (103)
T ss_dssp CEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECCSSC
T ss_pred EEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 467775 8999999999999999999999999999999999999999887664
No 62
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.23 E-value=7.5e-06 Score=77.31 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=109.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
++.|.+++.-.+|||||++..|..+|.++|+++..+-....+ .+.. . ...+ +|
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg----~~~~-----------~-~gi~-----~D------ 204 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG----VMLE-----------G-DGVA-----LD------ 204 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH----HHHH-----------S-CSCC-----GG------
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh----hhhh-----------c-CCcc-----hh------
Confidence 789999999999999999999999999999999884211100 0000 0 0000 00
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh----hhhhhhhcCCCeEEEEeCCCcchH---------
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----QLTLCQVVPLTAAVIVTTPQKLAF--------- 215 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~----~~~~~~~~~~d~~iiv~~p~~~s~--------- 215 (423)
..........++.+...+ +++||+++|-..+|+... .+.+..-...+.++++..|....+
T Consensus 205 ------av~~df~aG~ve~~~~~~-~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p 277 (349)
T 2obn_A 205 ------AVRVDFAAGAVEQMVMRY-GKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIP 277 (349)
T ss_dssp ------GSBHHHHHHHHHHHHHHH-TTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCC
T ss_pred ------HHHHHHHhhhHHHHHHHh-ccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCC
Confidence 001112223445555444 368999999998776422 233333345688999999877666
Q ss_pred --HHHHHHHHHHHc-----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecC
Q 014511 216 --IDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 274 (423)
Q Consensus 216 --~~~~~~~~~l~~-----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 274 (423)
..+..+++.+.. .+.++.|+++|....+.. ..++..+.+++.+|+|.+..+.+
T Consensus 278 ~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~------~~~~~~~~ie~~~glPv~d~~r~ 337 (349)
T 2obn_A 278 PLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEY------AAKEAIAHTIAETGLPCTDVVRF 337 (349)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH------HHHHHHHHHHHHHCSCEECHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCEEEEecC
Confidence 777777777765 568899999998543321 12357889999999998876544
No 63
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.18 E-value=1.3e-06 Score=84.39 Aligned_cols=52 Identities=29% Similarity=0.396 Sum_probs=47.0
Q ss_pred CCceEEEEeeCCC---CCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC
Q 014511 67 KISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 121 (423)
Q Consensus 67 ~~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~ 121 (423)
...|+|.|+|..+ |.||||+++|||..|++.|+||+++ .+.|++...||...
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCC
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCC
Confidence 3569999999999 9999999999999999999999998 89999988877543
No 64
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.04 E-value=9e-05 Score=69.26 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=38.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
.+.+|+++ |.+|+||||+...||..+...|.+|++.+.|.+..
T Consensus 101 ~g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 101 KGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 143 (304)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh
Confidence 46799999 67999999999999999998888999999998764
No 65
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.76 E-value=0.00014 Score=76.04 Aligned_cols=93 Identities=19% Similarity=0.062 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
..|++.|||||+-..........+..+|.+++|+.+...........+..+...+++.+ +|+|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~------~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGAN------FL 152 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCccccc------HH
Confidence 46899999998754322222333556899999999876555556666777777788855 678997643311 12
Q ss_pred ChHHHHHHHhCCCeE-EeecC
Q 014511 255 GSGSQVVQQFGIPHL-FDLPI 274 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~ip~ 274 (423)
...+++.+.++...+ ..+|.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~Pi 173 (704)
T 2rdo_7 153 KVVNQIKTRLGANPVPLQLAI 173 (704)
T ss_pred HHHHHHHHHhCCCceeEEccc
Confidence 467788888875432 33553
No 66
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.65 E-value=6.5e-05 Score=63.69 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=36.0
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+++++|.|++ ..|+||||++..|+..|..+|++|.++..|+..
T Consensus 2 ~~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 2 NAMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp --CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 3567888886 669999999999999999999999999999864
No 67
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.59 E-value=0.0003 Score=70.85 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=57.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...+++ +-+++|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~------~~ 152 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRD------PM 152 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSC------HH
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCcccc------HH
Confidence 578899999986433222222335578999999988765444556667777777888 56778997643321 11
Q ss_pred ChHHHHHHHhCCCeE
Q 014511 255 GSGSQVVQQFGIPHL 269 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (423)
+..+++.+.++.+..
T Consensus 153 ~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 153 ELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 357788888886543
No 68
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.55 E-value=0.00029 Score=60.93 Aligned_cols=37 Identities=32% Similarity=0.403 Sum_probs=31.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.|.|+.++| .||||.|..+|...+.+|+||+++=+..
T Consensus 30 ~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 30 IIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 344554777 9999999999999999999999997766
No 69
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.53 E-value=0.0011 Score=63.28 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
.+.+|++. |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 156 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 46799999 6799999999999999999888899999999865
No 70
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.45 E-value=0.00018 Score=68.68 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+++.|+ +++|+||||+|.++|..+++.|.+|++||++.
T Consensus 63 G~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4566666 89999999999999999999999999999964
No 71
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.36 E-value=0.0016 Score=62.07 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=35.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 112 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~ 112 (423)
..+|+++ |.+|+||||+.-.|+..+...|.+|.++..||+...
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 116 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence 5677777 999999999999999999888999999999997643
No 72
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.26 E-value=0.00059 Score=65.34 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=34.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.++.|+ +.+|+||||++.++|..+++.|.+|++||++.
T Consensus 74 G~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4567665 88999999999999999999999999999985
No 73
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.21 E-value=0.003 Score=59.77 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=37.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
...++++. |..|+||||+.-.|+..+...|.+|.++..|++.
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 45678887 9999999999999999998888899999999864
No 74
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=97.16 E-value=0.00019 Score=55.27 Aligned_cols=35 Identities=26% Similarity=0.587 Sum_probs=30.0
Q ss_pred CceeeEEEe-CCeeEEEEcCCCCcccCChHHHHhhh
Q 014511 378 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTME 412 (423)
Q Consensus 378 ~~~~~~~~~-~~~~l~i~w~dgh~s~y~~~~L~~~~ 412 (423)
..|+++.+. ++..|.|.|+|||.+.|++.|||..|
T Consensus 7 ~~P~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~c 42 (101)
T 3luu_A 7 TQPLEIRPLMISRVMEVDWADGHTSRLTFEHLRVEC 42 (101)
T ss_dssp GCEEEEEEETTTTEEEEEETTSCEEEEEHHHHHHTC
T ss_pred CCCeEEEEeCCCCEEEEEeCCCCEEEECHHHHHhhC
Confidence 357888877 44589999999999999999999994
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.13 E-value=0.011 Score=50.21 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCceee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
.+++.|+|+|+...........+..+|.+++|.... ..++..+...++.+... +.+ +-+|.|+++...+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~---- 142 (190)
T 3con_A 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRT---- 142 (190)
T ss_dssp EEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC----
T ss_pred EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCccc----
Confidence 467899999874322122122234568787776654 44556665555555432 455 56888997653311
Q ss_pred ccCCChHHHHHHHhCCC
Q 014511 251 PFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 143 -~~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 143 -VDTKQAHELAKSYGIP 158 (190)
T ss_dssp -SCHHHHHHHHHHHTCC
T ss_pred -CCHHHHHHHHHHcCCe
Confidence 1123456666666654
No 76
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.05 E-value=0.0036 Score=59.12 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=83.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
++.|.+++.-.++||||++..|...|.++|++|..+-....+ .+.+.. .-.+..
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg----~li~~~-----------~gv~~D----------- 222 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTG----ILIGAD-----------AGYVID----------- 222 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHH----HHTTCS-----------EECCGG-----------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCcee----eeeccC-----------CCCCCC-----------
Confidence 689999999999999999999999999999999885432221 111110 000000
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh-----hhhhhhhcCCCeEEEEeCCC-----------c
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQ-----------K 212 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~-----~~~~~~~~~~d~~iiv~~p~-----------~ 212 (423)
....+.....++.++.....++||++|+-..+|+... .+....-...|.+|+...|. .
T Consensus 223 ------~~~~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~ 296 (350)
T 2g0t_A 223 ------AVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPK 296 (350)
T ss_dssp ------GSBGGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSC
T ss_pred ------ceecchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccC
Confidence 0111112222222222221378999999999876432 22233333568888877654 2
Q ss_pred -chHHHHHHHHHHHHcCCCCEEEEE-Eec
Q 014511 213 -LAFIDVAKGVRMFSKLKVPCIAVV-ENM 239 (423)
Q Consensus 213 -~s~~~~~~~~~~l~~~~~~~~gvV-~N~ 239 (423)
.++.....+++.+. +.+++|++ +|-
T Consensus 297 ~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 297 KPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 45555555555555 67899999 995
No 77
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.02 E-value=0.0043 Score=60.32 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+ ..+. ......+..+|.+++|+.+...........+..+...+++.+-+++|+++..
T Consensus 73 ~~~~~~iiDtpG-~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCPG-HADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECCC-SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCC-hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 467899999965 4332 2223334568999999988765555667777777778888667888997653
No 78
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.01 E-value=0.0011 Score=63.02 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=34.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..++.++ |.+|+||||++.++|..+++.|.+|+++|++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4667776 88999999999999999999999999999974
No 79
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.94 E-value=0.0056 Score=57.17 Aligned_cols=85 Identities=12% Similarity=-0.004 Sum_probs=49.8
Q ss_pred CCcEEEEcCCCCCChh----------hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 014511 176 ELDYLVIDMPPGTGDI----------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 244 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~----------~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~ 244 (423)
.+.++|+|||+-.... ......+..+|.+++|+.++.. +..+....++.+...+.++ -+|+|+++...
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pv-ilV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV-IVVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCE-EEEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCE-EEEEECccCCC
Confidence 6789999998643211 1111223457999999887753 4444333377777777774 57779986541
Q ss_pred CCceeeccCCChHHHHHHHhC
Q 014511 245 DGKRYYPFGRGSGSQVVQQFG 265 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~ 265 (423)
... ......+++.+.++
T Consensus 137 ~~~----~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 137 PAK----NVLPLIDEIHKKHP 153 (308)
T ss_dssp SGG----GGHHHHHHHHHHCT
T ss_pred CHH----HHHHHHHHHHHhcc
Confidence 111 11134566677765
No 80
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.92 E-value=0.0048 Score=64.24 Aligned_cols=86 Identities=16% Similarity=0.035 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...+++++ +|+|+++..... ..
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~------~~ 147 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGAD------LW 147 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------HH
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCC------HH
Confidence 56889999998754322223333456899999998876544555566667777788854 678997643311 11
Q ss_pred ChHHHHHHHhCCC
Q 014511 255 GSGSQVVQQFGIP 267 (423)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (423)
...+++.+.++..
T Consensus 148 ~~~~~l~~~l~~~ 160 (691)
T 1dar_A 148 LVIRTMQERLGAR 160 (691)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 3567788888754
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.90 E-value=0.025 Score=46.43 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 249 (423)
..+++.++|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.....
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~--- 124 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAART--- 124 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcc---
Confidence 35678999998744322222222335688888877653 4445555555554432 455 56888997653321
Q ss_pred eccCCChHHHHHHHhCCC
Q 014511 250 YPFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 125 --~~~~~~~~~~~~~~~~ 140 (166)
T 2ce2_X 125 --VESRQAQDLARSYGIP 140 (166)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --cCHHHHHHHHHHcCCe
Confidence 1123456666777654
No 82
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.0014 Score=56.17 Aligned_cols=41 Identities=34% Similarity=0.376 Sum_probs=35.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+++|.+. |..|+||||++..||..|...|.+|.++|.|.-
T Consensus 12 ~~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 34566665 999999999999999999999999999998753
No 83
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.86 E-value=0.0042 Score=55.02 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=30.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
.+.+..|-.|+||||.+..++..++.+|++|+++-
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34555588999999999999999999999999993
No 84
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.85 E-value=0.005 Score=61.64 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=43.5
Q ss_pred CCceEEEEe-eCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc
Q 014511 67 KISNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 115 (423)
Q Consensus 67 ~~~kvI~v~-s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~ 115 (423)
.|+|-|.|. +.-.|+||+++++.|+..|.++|+||..+-+||+-+.-+.
T Consensus 10 ~~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~ 59 (550)
T 1vco_A 10 RPRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAG 59 (550)
T ss_dssp CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGG
T ss_pred cceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCcc
Confidence 377899999 8899999999999999999999999999999988654433
No 85
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.84 E-value=0.0019 Score=54.91 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=36.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
|+++++|+ |..|+||||+...|+..+...|++|..+..|+..
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 56788777 6889999999999999999999999999998754
No 86
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.77 E-value=0.0068 Score=58.10 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEe-cccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN-MCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N-~~~~ 242 (423)
..+.+.|+|||+--.........+..+|.+++|+. +......+...+..++..+++..-+++| +++.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 46779999998643332222333456899999998 6655666777777888888888677778 9765
No 87
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.77 E-value=0.00077 Score=67.85 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=58.8
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
+..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...++++ -+|+|+++..... .
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl~~~~------~ 151 (528)
T 3tr5_A 79 YKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDRDTRP------S 151 (528)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTSCCSC------H
T ss_pred eCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCcccc------H
Confidence 35788999999874332223333355789999999887655555667777888888875 5677997653211 1
Q ss_pred CChHHHHHHHhCCCe
Q 014511 254 RGSGSQVVQQFGIPH 268 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~ 268 (423)
....+++.+.++...
T Consensus 152 ~~~l~ei~~~l~~~~ 166 (528)
T 3tr5_A 152 IELLDEIESILRIHC 166 (528)
T ss_dssp HHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHhhCCCc
Confidence 135778888888643
No 88
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.76 E-value=0.0089 Score=54.17 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCCCChhh----------h--hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQ----------L--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~----------~--~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
++..+.|+|||+-.+... + .......+|.+++|+..+. ......+...+...+.+ +-+|+||++.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 345789999986433211 1 1111145799999988765 33444556667777777 4577799765
Q ss_pred cCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 243 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
...... ....+.+.+.+|.+++..
T Consensus 123 ~~~~~~-----~~~~~~l~~~lg~~vi~~ 146 (256)
T 3iby_A 123 AEHRGI-----SIDTEKLESLLGCSVIPI 146 (256)
T ss_dssp HHHTTC-----EECHHHHHHHHCSCEEEC
T ss_pred CCcCCc-----HHHHHHHHHHcCCCEEEE
Confidence 332111 124677889999886654
No 89
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.74 E-value=0.0015 Score=59.38 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
|++|.+. |-.|+||||++..|+..|...|+.++++|.|..
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4566666 779999999999999999989999988888753
No 90
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.73 E-value=0.059 Score=44.92 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+..+.|+|+|+.-....+.......+|.+++|...+..........+..+...+.+ +-+|.|+++.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl 119 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDK 119 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTS
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccC
Confidence 45577889876432211112223456888888876554334444455555555666 5677899754
No 91
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.73 E-value=0.011 Score=61.46 Aligned_cols=86 Identities=19% Similarity=-0.012 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...+.+++ +|+|+++..... ..
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~------~~ 145 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKLGAN------FE 145 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------HH
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCccccc------hH
Confidence 56889999998754322222233446799999998866444445566667777777754 677997643311 11
Q ss_pred ChHHHHHHHhCCC
Q 014511 255 GSGSQVVQQFGIP 267 (423)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (423)
...+++.+.++..
T Consensus 146 ~~~~~l~~~l~~~ 158 (693)
T 2xex_A 146 YSVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 3567788888754
No 92
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.70 E-value=0.078 Score=43.40 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.++++..... .++..+......+.+ .+.+ +-+|.|+++..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLE 121 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCccc
Confidence 4568899998743322222222335688888776554 455555555444432 2455 56788998653
No 93
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.66 E-value=0.012 Score=59.36 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=64.1
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|++|-+=|||||+-.....-....+.++|.+++|+.+..--...+...++.+.+.+++++ +++|+++..... -
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~ad------~ 169 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREALH------P 169 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCCCC------H
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchhcc------h
Confidence 578889999998754332223334667899999999987777788899999999999965 556996533211 1
Q ss_pred CChHHHHHHHhCCCeE
Q 014511 254 RGSGSQVVQQFGIPHL 269 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~ 269 (423)
...++++.+.++...+
T Consensus 170 ~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 170 LDVMADIEQHLQIECA 185 (548)
T ss_dssp HHHHHHHHHHHTSEEE
T ss_pred hHhhhhhhhhcCCceE
Confidence 2468889999986543
No 94
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.66 E-value=0.0055 Score=59.39 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+ ..+. ......+..+|.+++|+.+...........+..+...+++.+-+++|+++..
T Consensus 64 ~~~~~~iiDtpG-~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPG-HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSS-HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCC-hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 568899999975 3332 2222334468999999988765555566666777778888667888997653
No 95
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.60 E-value=0.07 Score=45.78 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 249 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++......
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~-- 146 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPERE-- 146 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCC--
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccc--
Confidence 4577899999864322112222244578888887765 44566666666666543 445 567889976533111
Q ss_pred eccCCChHHHHHHHhCC
Q 014511 250 YPFGRGSGSQVVQQFGI 266 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 147 --v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 147 --VQAVEGKKLAESWGA 161 (201)
T ss_dssp --SCHHHHHHHHHHHTC
T ss_pred --cCHHHHHHHHHHhCC
Confidence 111234556666654
No 96
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.59 E-value=0.0038 Score=59.35 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..++.|+ |-.|+||||++.++|..++..|.+|++||...
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4677777 66999999999999999999999999998865
No 97
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.59 E-value=0.0099 Score=59.45 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=41.9
Q ss_pred ceEEEEe-eCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc
Q 014511 69 SNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 115 (423)
Q Consensus 69 ~kvI~v~-s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~ 115 (423)
+|-|.|. +.-.|+|||++++.|+..|+++|+||..+-+||+-+.-+.
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~ 50 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPG 50 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGG
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCC
Confidence 5789999 8899999999999999999999999999999988754443
No 98
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.59 E-value=0.0021 Score=55.11 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=32.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
|++|+|. |-.|+||||++..|+..|...|+++..+|.|
T Consensus 1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3566666 7889999999999999999889999999754
No 99
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.54 E-value=0.0025 Score=56.05 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=34.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..++|+|+ |.+|+||||+..+|+..+... ++|.+++.|++.
T Consensus 29 ~~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 29 GTVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS 69 (221)
T ss_dssp TCEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC
Confidence 34577777 799999999999999988655 899999999853
No 100
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0036 Score=58.31 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
.+.++++. |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 99 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 45799999 6799999999999999999888899999998765
No 101
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.51 E-value=0.051 Score=46.12 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~----s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...... .......+.+.+... +.+ +-+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~ 148 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLP 148 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTST
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcc
Confidence 456789999987433222222234567999999888743 222233333344332 344 56788997653
No 102
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.48 E-value=0.034 Score=46.76 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 136 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 136 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4678999998744322222222345688888877653 444555554444432 2455 45788998653
No 103
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.47 E-value=0.078 Score=45.10 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=40.0
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEeccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCH 241 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~-~~~~~~gvV~N~~~ 241 (423)
+.+.|+|+|+.-.........+..+|.+++|...... ++..+...+..+.. .+ ..+-+|.|+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC
Confidence 7899999986322111222224467889998887654 45555555555554 34 45678889977
No 104
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.47 E-value=0.026 Score=48.66 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+ ....+.+... +.+ +-+|.|+++..
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 142 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhh
Confidence 4678999997642211122222345788888876554 455555 3455555543 555 45888997653
No 105
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.47 E-value=0.069 Score=44.52 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEecccccCCCcee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~~~~~~~ 249 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +.+.+-+|.|+++......
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~-- 132 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT-- 132 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS--
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc--
Confidence 3678999998753322222222446789999888754 3555555555555442 5565778899987543111
Q ss_pred eccCCChHHHHHHHhCCC
Q 014511 250 YPFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (423)
...+..+++.+.++.+
T Consensus 133 --~~~~~~~~~~~~~~~~ 148 (178)
T 2hxs_A 133 --IKPEKHLRFCQENGFS 148 (178)
T ss_dssp --SCHHHHHHHHHHHTCE
T ss_pred --cCHHHHHHHHHHcCCc
Confidence 1113445566666643
No 106
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.42 E-value=0.038 Score=46.97 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~ 243 (423)
+.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 139 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLR 139 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcc
Confidence 35678999998743322222222446788988887754 456666555554433 2444 55788997653
No 107
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.40 E-value=0.02 Score=53.15 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=40.8
Q ss_pred CCCcEEEEcCCCCCCh--------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC--CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~--------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
+.+.++|+|||+-... .......+..+|.+++|+..+..--..-..+++.+++. +.+ +-+|+|+++..
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccC
Confidence 4677899999864331 11122234568999999887543222234455667665 666 45777997643
No 108
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.39 E-value=0.0048 Score=53.66 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=35.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+.+|++. |..|+||||++..|+..+...|.+|.+++.|...
T Consensus 22 ~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4577777 8899999999999999998888899999988754
No 109
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.39 E-value=0.025 Score=46.72 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC--CCCEEEEEEecccccCCCceeecc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 252 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~ 252 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+.. ++..+...+..+... +.+ +-+|.|+++...... .
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~----~ 127 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSC----I 127 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCS----S
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccc----c
Confidence 46789999986322111111223457888888877543 455555555544332 445 567889986533111 1
Q ss_pred CCChHHHHHHHhCCC
Q 014511 253 GRGSGSQVVQQFGIP 267 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~ 267 (423)
.....+++.+.++.+
T Consensus 128 ~~~~~~~~~~~~~~~ 142 (168)
T 1z2a_A 128 KNEEAEGLAKRLKLR 142 (168)
T ss_dssp CHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHcCCe
Confidence 123455666666643
No 110
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.37 E-value=0.029 Score=47.63 Aligned_cols=86 Identities=10% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++......
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~---- 144 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA-QVILVGNKCDLEDERV---- 144 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTCGGGCC----
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECcccccccC----
Confidence 4678999998743222222222446788888887643 4566666666666553 33 3568889976533111
Q ss_pred cCCChHHHHHHHhCC
Q 014511 252 FGRGSGSQVVQQFGI 266 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 145 VPAEDGRRLADDLGF 159 (189)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 112345667777764
No 111
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.35 E-value=0.037 Score=45.51 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=38.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 4678999998643322222222345688888877653 445555554444433 2455 56888998653
No 112
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.35 E-value=0.045 Score=45.85 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCceeecc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 252 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 252 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++...... .
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----~ 135 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK----V 135 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----S
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc----C
Confidence 4678999998643222222222445788888887653 45566666666665432 223667889976533211 1
Q ss_pred CCChHHHHHHHhCC
Q 014511 253 GRGSGSQVVQQFGI 266 (423)
Q Consensus 253 ~~~~~~~~~~~~~~ 266 (423)
.....+++.+..+.
T Consensus 136 ~~~~~~~~~~~~~~ 149 (181)
T 2efe_B 136 TAEDAQTYAQENGL 149 (181)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 11234555555554
No 113
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.34 E-value=0.059 Score=44.74 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCCC--hhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccC
Q 014511 176 ELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 244 (423)
Q Consensus 176 ~yD~iiiD~pp~~~--~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~ 244 (423)
.+.+.++|+|+.-. ...+.......+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++...
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~ 125 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLAR 125 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhcc
Confidence 35688999976432 1112222233467777776654 45666666666666543 455 557889976543
No 114
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.29 E-value=0.19 Score=42.58 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----------CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----------KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~-----------~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCC
Confidence 56789999998643222222222446788988887764 4566666555554332 455 5578899764
Q ss_pred c
Q 014511 243 D 243 (423)
Q Consensus 243 ~ 243 (423)
.
T Consensus 140 ~ 140 (199)
T 4bas_A 140 A 140 (199)
T ss_dssp T
T ss_pred C
Confidence 3
No 115
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.26 E-value=0.17 Score=41.61 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=39.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 242 (423)
+.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 120 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDM 120 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCC
Confidence 35678999998643222222222345788888877654 356666555544432 2344 6788899764
No 116
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.076 Score=44.32 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+. .+-+|.|+++......
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~---- 133 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV-ALMLLGNKVDSAHERV---- 133 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECCSTTSCCC----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-cEEEEEECcccCcccc----
Confidence 4578899998643322222222445788888887654 455555555555544 233 3568889976543211
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 134 ~~~~~~~~~~~~~~~~ 149 (180)
T 2g6b_A 134 VKREDGEKLAKEYGLP 149 (180)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123445566666654
No 117
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.19 Score=42.30 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
+.+.+.|+|+|+.-....+....+..+|.+++|...+.. ++..+...+..+.+. .-..+-+|.|+++.
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 346789999986432212222224467889888877543 567666666555432 22346688899764
No 118
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.19 E-value=0.076 Score=44.83 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCceee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++......
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~--- 144 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRA--- 144 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCC---
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccc---
Confidence 5678999998643322222233446788888887653 455555555555543 2444 567889976533111
Q ss_pred ccCCChHHHHHHHhCCC
Q 014511 251 PFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 145 -~~~~~~~~~~~~~~~~ 160 (195)
T 3bc1_A 145 -VKEEEARELAEKYGIP 160 (195)
T ss_dssp -SCHHHHHHHHHHHTCC
T ss_pred -cCHHHHHHHHHHcCCC
Confidence 1123455666666643
No 119
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0054 Score=54.78 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.++.++ |..|+||||++.++|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 466666 889999999999999999999999999998763
No 120
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.018 Score=49.15 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=50.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++......
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~--- 145 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERV--- 145 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCC---
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccc---
Confidence 4567899999763211112222244678888887765 45556666666666553 334 567889976533111
Q ss_pred ccCCChHHHHHHHhCCC
Q 014511 251 PFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (423)
......+.+.+.++.+
T Consensus 146 -~~~~~~~~~~~~~~~~ 161 (191)
T 3dz8_A 146 -VPTEKGQLLAEQLGFD 161 (191)
T ss_dssp -SCHHHHHHHHHHHTCE
T ss_pred -cCHHHHHHHHHHcCCe
Confidence 1223456667777753
No 121
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.16 E-value=0.27 Score=40.14 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++.
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA-VLLVFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTS
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC-eEEEEEECcCC
Confidence 45778999998643322222222446788888877644 4566666555544332 33 46688899765
No 122
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.16 E-value=0.1 Score=43.67 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCceee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
.+.+.|+|+|+.-....+.......+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.|+++......
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~--- 128 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERV--- 128 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCC---
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcce---
Confidence 4678899998643221111122335688888776643 455555555544422 2455 557789976532111
Q ss_pred ccCCChHHHHHHHhCC
Q 014511 251 PFGRGSGSQVVQQFGI 266 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 129 -~~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 129 -ISYEEGKALAESWNA 143 (181)
T ss_dssp -SCHHHHHHHHHHTTC
T ss_pred -ecHHHHHHHHHHhCC
Confidence 122345556666554
No 123
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.16 E-value=0.0026 Score=58.93 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=33.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
...+|+|+ |-.|+||||+|..|+..|...|.++.+||+|-..
T Consensus 4 ~~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34578887 7889999999999999998888899999999765
No 124
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.15 E-value=0.048 Score=45.00 Aligned_cols=86 Identities=12% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++...+.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----- 124 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV----- 124 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC-----
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc-----
Confidence 4678999998632111111122335688888877654 3555555555555443 333 56788997652211
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 125 ~~~~~~~~~~~~~~~~ 140 (170)
T 1g16_A 125 VTADQGEALAKELGIP 140 (170)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123455666666654
No 125
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.13 E-value=0.0055 Score=57.42 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.++.|+ +.+|+||||++.++|..++.+|.+|+++++..
T Consensus 69 ~l~li~-G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 69 NFVLIA-ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 455555 99999999999999999999999999999884
No 126
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.08 E-value=0.0052 Score=52.06 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=32.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
||++++|++ ..|+||||++..|+..+...|+++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 568999995 88999999999999999999999888877754
No 127
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.08 E-value=0.13 Score=42.91 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=35.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcc
Confidence 35678999998643222222222345788888886644 455555555444432 2344 5678899765
No 128
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.06 E-value=0.065 Score=46.11 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=49.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCceeecc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 252 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 252 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++...... .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~ 131 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----V 131 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----S
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----c
Confidence 4678999998743222222222445788888888754 45566666666655432 223567889976543211 1
Q ss_pred CCChHHHHHHHhCCC
Q 014511 253 GRGSGSQVVQQFGIP 267 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~ 267 (423)
......++.+..+.+
T Consensus 132 ~~~~~~~~~~~~~~~ 146 (206)
T 2bcg_Y 132 EYDVAKEFADANKMP 146 (206)
T ss_dssp CHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHcCCe
Confidence 112345555555543
No 129
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.06 E-value=0.079 Score=44.96 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=50.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+....+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++......
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~---- 138 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKV---- 138 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCC----
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccc----
Confidence 3678999998643222222222445788888877654 4455555555555543 334 567889976543211
Q ss_pred cCCChHHHHHHHhCCCe
Q 014511 252 FGRGSGSQVVQQFGIPH 268 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~ 268 (423)
......+++.+.++.++
T Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (196)
T 3tkl_A 139 VDYTTAKEFADSLGIPF 155 (196)
T ss_dssp SCHHHHHHHHHHTTCCE
T ss_pred cCHHHHHHHHHHcCCcE
Confidence 11234566777777543
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.05 E-value=0.0066 Score=53.18 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=30.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+++++ |.+|+||||++.++|. ..|.+|+++|.+.+
T Consensus 21 ~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 21 VLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 456665 9999999999999998 56889999998863
No 131
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.02 E-value=0.0071 Score=53.30 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=33.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
...+|+|+ |.+||||||+..+|+..+... +++..|+.|++
T Consensus 37 ~~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 34677777 779999999999999987665 79999999985
No 132
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.00 E-value=0.048 Score=44.59 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~-------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
...+.|+|||+.... .......+..+|.++++......-........+.+...+.+ +-+|.|+++.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 346789999764431 11111223457888888776552112223444555555666 5678899754
No 133
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.056 Score=46.04 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.+.. ...+-+|.|+++..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 35678999998643222222222445788888877643 45566666666665542 22466788998754
No 134
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.97 E-value=0.0054 Score=55.37 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=33.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHH-----CCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-----~G~~VlliD~D~~~ 110 (423)
.+.+|+|+ |-.|+||||+|..||..|.. .|++|+++|+|-..
T Consensus 21 ~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 44677777 88999999999999987763 36789999999654
No 135
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.96 E-value=0.067 Score=44.15 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++......
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~---- 128 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERH---- 128 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCC----
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccc----
Confidence 4578899998643222222222345688888877654 455566555555543 2333 567889986543211
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 129 ~~~~~~~~~~~~~~~~ 144 (170)
T 1z08_A 129 VSIQEAESYAESVGAK 144 (170)
T ss_dssp SCHHHHHHHHHHTTCE
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123455566666643
No 136
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.95 E-value=0.044 Score=45.22 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .+...+...++.+...+ ...+-+|.|+++..
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 4678999998642222222222345788888877654 45566666666665542 22466778997653
No 137
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.92 E-value=0.099 Score=44.27 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=40.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCc
Confidence 46778999998642211122222345788888887654 456666555544432 3455 56788997643
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.90 E-value=0.0077 Score=56.80 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=33.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..+.+ .+.+|+||||++.++|..++..|.+|+++.+...
T Consensus 47 ~LiiI-aG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 47 SLVII-GARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp CEEEE-EECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred cEEEE-EeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 45554 4999999999999999999999999999998753
No 139
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=95.90 E-value=0.002 Score=51.25 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=36.0
Q ss_pred CCEEEEEEEecCCCCchhHHHHHHHHHHHhc-CCCeeeEEEEEE
Q 014511 7 LGEVSFRLELTTPACPIKDMFEQRANEVVLA-IPWVNKVNVTMS 49 (423)
Q Consensus 7 ~~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~-i~~v~~v~i~l~ 49 (423)
++.|.|.||+|.|+||+...|...++.+|.. +++.-++++.++
T Consensus 49 ~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~v~I~ 92 (130)
T 3ux2_A 49 EYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYIS 92 (130)
T ss_dssp EEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCCCCCC
T ss_pred CCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 4579999999999999999999999999954 777666666554
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.86 E-value=0.009 Score=52.68 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=34.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..++++. |..|+||||++..+|..++..|.+|++++.+..
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 3577776 889999999999999998888889999998763
No 141
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.86 E-value=0.011 Score=50.03 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=34.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
+++|++. |-.|+||||++..|+..|...|..+..+|.|.-
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4577776 889999999999999999888999988887754
No 142
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.86 E-value=0.0068 Score=59.63 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=33.7
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+.+..+.+|+||||++.++|..++.+|.+|+++.+....
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 444459999999999999999999999999999988643
No 143
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.045 Score=45.20 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 4678999998754322222222345688888877654 3455555555544432 455 56888998653
No 144
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.11 Score=44.69 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...++.+.... ...+-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 3568999998643222222223446788888887643 45555555555555431 22356788998653
No 145
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.81 E-value=0.012 Score=51.02 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..+.+|++. |-.|+||||++..||..|...|..+..+|.|.-
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 445677777 899999999999999999988987788887743
No 146
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.81 E-value=0.052 Score=49.55 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCCCChhh------------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQ------------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~------------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|||+...... ........+|.+++|+.... ..........+.+.+.+ +-+|+||++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccc
Confidence 356788999987433110 01111236788999888765 33444555566666777 4577799865
Q ss_pred cCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 243 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
...... ....+.+.+.+|.+++..
T Consensus 125 ~~~~~~-----~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 125 AEKQNI-----RIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHTTE-----EECHHHHHHHHTSCEEEC
T ss_pred hhhhhH-----HHHHHHHHHhcCCCEEEE
Confidence 332111 123678888899876654
No 147
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.79 E-value=0.048 Score=44.96 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 5678999998643222222222445788888887654 45566666665554432 22355677998753
No 148
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.74 E-value=0.13 Score=43.27 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCceee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++.....
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~---- 125 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRT---- 125 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccc----
Confidence 3557789998743221122122334688888776644 455555555555543 2445 56778997654321
Q ss_pred ccCCChHHHHHHHhCCCe
Q 014511 251 PFGRGSGSQVVQQFGIPH 268 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (423)
......+++.+.++.++
T Consensus 126 -~~~~~~~~~~~~~~~~~ 142 (189)
T 4dsu_A 126 -VDTKQAQDLARSYGIPF 142 (189)
T ss_dssp -SCHHHHHHHHHHHTCCE
T ss_pred -cCHHHHHHHHHHcCCeE
Confidence 12235667777777543
No 149
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.74 E-value=0.069 Score=44.45 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .+...+...+..+... +. .+-+|.|+++..
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 133 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT-VIILIGNKADLE 133 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTCG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECcccc
Confidence 4678999998642211222222445788888887654 4455555555555432 33 366888997653
No 150
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.063 Score=46.36 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLR 142 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhh
Confidence 4678999998643222222222445788888877654 455555 3455555543 555 45888997653
No 151
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.69 E-value=0.099 Score=45.07 Aligned_cols=86 Identities=12% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+... +. .+-+|.|+++...+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~----- 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA-QLLLVGNKSDMETRV----- 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS-EEEEEEECTTCSSCC-----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECCCCcccc-----
Confidence 3678999998632211111222445788888887654 3555555555555443 33 356788998753211
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 142 ~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 142 VTADQGEALAKELGIP 157 (213)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCE
Confidence 1123455666666654
No 152
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.68 E-value=0.12 Score=43.06 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-H---cCCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-S---KLKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l-~---~~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+ + ..+.+ +-+|.|+++..
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 127 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLE 127 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 3568899998643211111111334688888876654 3555555544444 2 23455 56788997654
No 153
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.67 E-value=0.088 Score=44.16 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=46.9
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCceeec
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
+.+-|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++......
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~---- 140 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRK---- 140 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCC----
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccC----
Confidence 446679998632211111112334688888877654 355555555544432 3455 457889976533111
Q ss_pred cCCChHHHHHHHhCCCe
Q 014511 252 FGRGSGSQVVQQFGIPH 268 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~ 268 (423)
......+++.+.++.++
T Consensus 141 v~~~~~~~~~~~~~~~~ 157 (183)
T 3kkq_A 141 VTRDQGKEMATKYNIPY 157 (183)
T ss_dssp SCHHHHHHHHHHHTCCE
T ss_pred cCHHHHHHHHHHhCCeE
Confidence 12234567777777553
No 154
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=95.66 E-value=0.08 Score=46.88 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCceEEEEeeCC-CCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc
Q 014511 67 KISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 116 (423)
Q Consensus 67 ~~~kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~ 116 (423)
.+||-|.|++|- .|.||=.+|+.|+..|..+|++|-.+-+||+-+--+..
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~GT 71 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGT 71 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC--
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeecCCC
Confidence 346888888775 89999999999999999999999999999987654433
No 155
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.65 E-value=0.011 Score=51.78 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=34.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~ 108 (423)
++++|++. |-.|+||||++..|+..|. ..|+++..+|.|.
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45677776 8899999999999999998 7799999998764
No 156
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.64 E-value=0.047 Score=45.58 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=47.4
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-CCEEEEEEecccccCCCceeeccCC
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~-~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... -..+-+|.|+++..... ....
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~ 133 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK----VVET 133 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGC----CSCH
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhc----ccCH
Confidence 678999998632211111222345788888877644 45555555555554432 22356788997643311 1112
Q ss_pred ChHHHHHHHhCCC
Q 014511 255 GSGSQVVQQFGIP 267 (423)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (423)
.....+.+.++.+
T Consensus 134 ~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 134 EDAYKFAGQMGIQ 146 (181)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCe
Confidence 3455666666654
No 157
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.63 E-value=0.18 Score=42.71 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++......
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 143 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRD---- 143 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCC----
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccc----
Confidence 4678999998632211111122345788888887654 4555566666555543 333 567889976533111
Q ss_pred cCCChHHHHHHHhCC
Q 014511 252 FGRGSGSQVVQQFGI 266 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 144 v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 144 VKREEGEAFAREHGL 158 (191)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112344556666664
No 158
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.62 E-value=0.23 Score=41.73 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~~ 243 (423)
+.+.+.++|+|+.-.........+..+|.+++|...+. .++..+...+..+ +. .+.+ +-+|.|+++..
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLL 130 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcc
Confidence 35678899998643222222222446788888877654 4566665555443 22 2444 56788997643
No 159
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.59 E-value=0.035 Score=57.45 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
..+.+.|+|||+-..........+..+|.+++|..+...-.......+..+...+++++ +|+|+++.. .. ..
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~~------~~ 143 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-GD------YY 143 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-CC------HH
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-hh------HH
Confidence 46778999997533222222233446799999988765544556677777777788865 678997654 11 12
Q ss_pred ChHHHHHHHhC
Q 014511 255 GSGSQVVQQFG 265 (423)
Q Consensus 255 ~~~~~~~~~~~ 265 (423)
...+++.+.++
T Consensus 144 ~~~~~l~~~l~ 154 (665)
T 2dy1_A 144 ALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 45677888887
No 160
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.59 E-value=0.0077 Score=52.21 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=29.5
Q ss_pred cccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 64 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 64 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+.+++++|++. |-.|+||||++..|+..+ | ..++|.|..
T Consensus 13 ~m~~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 13 AVRRFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp --CCCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 355667777777 889999999999999887 4 346777753
No 161
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.58 E-value=0.0086 Score=50.83 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~ 106 (423)
+.+.++ |..|+||||++..+|..+. ..|.+|+.+++
T Consensus 39 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 39 KGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 566666 8999999999999999998 77888877654
No 162
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.58 E-value=0.014 Score=50.40 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=31.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+.+.++ |..|+||||++..++..+...|.+|+.+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 455555 8899999999999999999989999988764
No 163
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.57 E-value=0.11 Score=42.68 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++........ .
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~~-~ 128 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI-IIALVGNKIDXLQEGGER-K 128 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC-EEEEEEECGGGGGSSCCC-C
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC-cEEEEEECCCcccccccc-C
Confidence 4568999998643222222222445788888887654 4555666555555432 33 356788998754321100 1
Q ss_pred cCCChHHHHHHHhCC
Q 014511 252 FGRGSGSQVVQQFGI 266 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (423)
......+++.+..+.
T Consensus 129 v~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 129 VAREEGEKLAEEKGL 143 (170)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 122334555555554
No 164
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.57 E-value=0.0093 Score=50.89 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++|+|. |-.|+||||++..||..|...|.+.-.+|.|
T Consensus 4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 456665 8899999999999999998888666667654
No 165
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.56 E-value=0.16 Score=43.41 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcc
Confidence 4678999998744322222222335688888876653 455555555554443 2455 45788997653
No 166
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.53 E-value=0.12 Score=51.25 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+--.........+..+|.+++|+..+.... ......+..+...+.+.+-+|+|+++..
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 56789999998643322233333556899999988766421 2345555666677776677889998754
No 167
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.52 E-value=0.12 Score=42.39 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCceee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
.+.+.++|+|+.-....+....+..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++......
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~--- 123 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSRE--- 123 (166)
T ss_dssp EEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCC---
T ss_pred EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccc---
Confidence 456788899764322212222233567777776554 44566666666655443 445 567889976543211
Q ss_pred ccCCChHHHHHHHhCC
Q 014511 251 PFGRGSGSQVVQQFGI 266 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (423)
......+++.+..+.
T Consensus 124 -~~~~~~~~~~~~~~~ 138 (166)
T 3q72_A 124 -VSVDEGRACAVVFDC 138 (166)
T ss_dssp -SCHHHHHHHHHHTTC
T ss_pred -cCHHHHHHHHHHhCC
Confidence 122334555666564
No 168
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.46 E-value=0.25 Score=41.95 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=45.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 249 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++....
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 145 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNA---- 145 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCC----
Confidence 45678999998642211111122346788888877654 4566666655554331 344 6688899764321
Q ss_pred eccCCChHHHHHHHhCC
Q 014511 250 YPFGRGSGSQVVQQFGI 266 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (423)
...+++.+.++.
T Consensus 146 -----~~~~~i~~~~~~ 157 (192)
T 2b6h_A 146 -----MPVSELTDKLGL 157 (192)
T ss_dssp -----CCHHHHHHHTTG
T ss_pred -----CCHHHHHHHhCc
Confidence 124566666653
No 169
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.17 Score=43.09 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccC
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 244 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~ 244 (423)
.+.+.|+|+|+... .......+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++...
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~ 146 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDH 146 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccc
Confidence 46788999986443 2222222345688888887654 455555555554443 2455 568889976543
No 170
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.42 E-value=0.11 Score=44.39 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=50.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++......
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 130 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERV---- 130 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCC----
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccc----
Confidence 4678999997643222222222445788888887654 4556666666666543 344 568889976533211
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 131 ~~~~~~~~~~~~~~~~ 146 (203)
T 1zbd_A 131 VSSERGRQLADHLGFE 146 (203)
T ss_dssp SCHHHHHHHHHHHTCE
T ss_pred cCHHHHHHHHHHCCCe
Confidence 1223456677777753
No 171
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.40 E-value=0.11 Score=46.81 Aligned_cols=89 Identities=9% Similarity=0.028 Sum_probs=52.5
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 014511 175 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 246 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~--------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 246 (423)
..+.+.|+|+|+..+... ........+|.+++|+..+... ........+...+.+ +-+|+||++.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~ 126 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKK-VILAMTAIDEAKKT 126 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCC-EEEEEECHHHHHHT
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCC-EEEEEECcCCCCcc
Confidence 456789999987432111 1111113578899988876542 233455556666777 46778998653311
Q ss_pred ceeeccCCChHHHHHHHhCCCeEEe
Q 014511 247 KRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
. .. ...+++.+.+|.+++..
T Consensus 127 ~----i~-~~~~~l~~~lg~~vi~~ 146 (258)
T 3a1s_A 127 G----MK-IDRYELQKHLGIPVVFT 146 (258)
T ss_dssp T----CC-BCHHHHHHHHCSCEEEC
T ss_pred c----hH-HHHHHHHHHcCCCEEEE
Confidence 1 11 23678888898776544
No 172
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.40 E-value=0.23 Score=49.31 Aligned_cols=123 Identities=7% Similarity=-0.017 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 249 (423)
..+.+.|+|||+.-....+....+..+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.||++....
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~---- 438 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDA---- 438 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSC----
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcC----
Confidence 45789999998743322222223456798988887654 456666655554432 2344 5678899764321
Q ss_pred eccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 014511 250 YPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIRQQVST 321 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~~la~~i~~~~~~~~~~~~~ 321 (423)
...+++.+.++..... ..+.+++... ......+.++.+.|.+.+.......++
T Consensus 439 -----~~~~~~~~~~~~~~~~------------~~~~~~~~~S--A~~g~gi~~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 439 -----MKPHEIQEKLGLTRIR------------DRNWYVQPSC--ATSGDGLYEGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp -----CCHHHHHHHTTCTTCC------------SSCEEEEECB--TTTTBTHHHHHHHHHHHCC--------
T ss_pred -----CCHHHHHHHhchhhhh------------cCCeEEEEEE--CCCCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 2356677777643221 1223344332 222344666777777766655544443
No 173
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.38 E-value=0.39 Score=40.22 Aligned_cols=68 Identities=6% Similarity=-0.017 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
+.+.+.|+|||+.-.........+..+|.+++|...+. .++..+...+..+.+ .+. .+-+|.|+++..
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 132 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA-TLLIFANKQDLP 132 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCC-cEEEEEeCccCC
Confidence 35678999997642211111222345788888887654 456666665554433 234 466888997643
No 174
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.022 Score=48.64 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+|++. |-.|+||||++..|+..|...|..|+-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56666 88999999999999999988898876444
No 175
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.36 E-value=0.28 Score=41.30 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
+.+.+.|+|||+.-.........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++.
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 135 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS-LLLIFANKQDL 135 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC-EEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC-eEEEEEECCCC
Confidence 35678999997632211111112345788888877654 3566665555444321 33 36788899764
No 176
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.34 E-value=0.38 Score=40.68 Aligned_cols=82 Identities=12% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 249 (423)
+.+.+.++|+|+......+....+..+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.|+++....
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 139 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA---- 139 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC----
Confidence 34678899998642211111122345788888877654 456666665555432 3445 5678899764321
Q ss_pred eccCCChHHHHHHHhCC
Q 014511 250 YPFGRGSGSQVVQQFGI 266 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (423)
...+++.+.++.
T Consensus 140 -----~~~~~~~~~~~~ 151 (190)
T 1m2o_B 140 -----VSEAELRSALGL 151 (190)
T ss_dssp -----CCHHHHHHHTTC
T ss_pred -----CCHHHHHHHhCC
Confidence 234566666654
No 177
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.34 E-value=0.024 Score=58.44 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=62.0
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|++|-+=|||||+-.....-....+..+|.+++|+....--...+...++.+.+.+++.+ +++|+++..... .
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~------~ 136 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQNGID------L 136 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCC------S
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccccCC------H
Confidence 577888999998765544334444667899999988866555567888899999999975 567996533211 1
Q ss_pred CChHHHHHHHhCCCe
Q 014511 254 RGSGSQVVQQFGIPH 268 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~ 268 (423)
....+++.+.++...
T Consensus 137 ~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 137 STVYQDIKEKLSAEI 151 (638)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 246788888887543
No 178
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.34 E-value=0.011 Score=49.60 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
||++|.+. |-.|+||||++..||..| |. -++|.|.
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~--~~id~d~ 35 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GY--EFVDTDI 35 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEcccH
Confidence 56777777 789999999999998876 43 4678773
No 179
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.32 E-value=0.012 Score=49.67 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=25.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.+.+|-.|+||||++..||..| |.....+|.|.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 44556999999999999988776 44566667763
No 180
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.30 E-value=0.017 Score=52.61 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=51.0
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-CCEEEEEEecccccCC
Q 014511 175 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDAD 245 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~--------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~-~~~~gvV~N~~~~~~~ 245 (423)
.++.+.|+|+|+...... ........+|.+++|+..... .........+...+ .+ +-+|+||++....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKK 124 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcc
Confidence 456689999987432111 111111347889988877653 33333444444556 66 4578899764321
Q ss_pred CceeeccCCChHHHHHHHhCCCeEEe
Q 014511 246 GKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.. .. ...+.+.+.+|.+++..
T Consensus 125 ~~----~~-~~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 125 KG----AK-IDIKKMRKELGVPVIPT 145 (271)
T ss_dssp HT----CC-CCHHHHHHHHSSCEEEC
T ss_pred cc----cH-HHHHHHHHHcCCcEEEE
Confidence 11 01 13788999999876644
No 181
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=95.26 E-value=0.013 Score=47.12 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=28.9
Q ss_pred CceeeEEEe-CCeeEEEEcCCCCcccCChHHHHhhh
Q 014511 378 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTME 412 (423)
Q Consensus 378 ~~~~~~~~~-~~~~l~i~w~dgh~s~y~~~~L~~~~ 412 (423)
..|+.+.+. .+..|.|.|+||+.+.|++.|||..|
T Consensus 9 ~~p~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~C 44 (132)
T 2l6n_A 9 PKVTGLKLKRKSRQLEISFDNGQQFTLSCELLRVYS 44 (132)
T ss_dssp CCEEEEEEEGGGTEEEEEETTSCEEEEEHHHHHHSC
T ss_pred CCCeeEEEecCCCEEEEEECCCCEEEeCHHHHHhcC
Confidence 456777766 33479999999999999999999995
No 182
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.26 E-value=0.011 Score=50.27 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=25.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++.|.+. |-.|+||||++..||..| |. -++|.|.
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~--~~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KR--ILYDSDK 38 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 45667766 779999999999999877 43 3566664
No 183
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.23 E-value=0.019 Score=51.25 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=30.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 109 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~ 109 (423)
+.+..|.+|+|||+++.++|...+ +.|.+|++++++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 444459999999999999998755 55889999998753
No 184
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.22 E-value=0.023 Score=52.44 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=33.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~ 108 (423)
..+++++ |..|+||||++.++|..++.. |.+|++++.+.
T Consensus 35 G~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 3567776 899999999999999999876 88999998864
No 185
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.20 E-value=0.22 Score=42.69 Aligned_cols=86 Identities=10% Similarity=0.135 Sum_probs=48.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++......
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~---- 151 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELRE---- 151 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCC----
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCccccccc----
Confidence 3678999998643222222222446788999888654 4555666666555542 333 567889976533111
Q ss_pred cCCChHHHHHHHhCC
Q 014511 252 FGRGSGSQVVQQFGI 266 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 152 v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 152 VSLAEAQSLAEHYDI 166 (201)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 111234555666554
No 186
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.17 E-value=0.035 Score=54.72 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCCC-----h---hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTG-----D---IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~-----~---~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
....+.|+|||+-.. . .......+..+|.+++|+.....-...-..+.+.+++.+.++ -+|.|+++.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pv-ilV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCE-EEEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 556789999976221 0 011112233578888887765432233345667777777774 567799753
No 187
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.12 E-value=0.019 Score=57.88 Aligned_cols=39 Identities=36% Similarity=0.365 Sum_probs=34.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|.+. |..|+||||++..|+..|..+|+++.++|.|.
T Consensus 372 ~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 4566665 88999999999999999999999999999885
No 188
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.12 E-value=0.3 Score=41.29 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|..... .++..+...+..+.... -..+-+|.|+++..
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 4668899997643222222222446788888877654 44455555555555431 22466788997653
No 189
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.10 E-value=0.021 Score=56.10 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=32.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~ 108 (423)
.++.|+ |.+|+||||++.++|...+. .|.+|+++++..
T Consensus 201 ~l~ii~-G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 201 SLNIIA-ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 455554 99999999999999999997 599999999974
No 190
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.10 E-value=0.011 Score=49.82 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=25.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
||++|.+. |-.|+||||++..||..| | ..++|.|.
T Consensus 3 ~m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 3 LAKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp --CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 45567666 889999999999999876 3 35677764
No 191
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.08 E-value=0.029 Score=47.98 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=28.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
.|++. |-.|+||||++..|+..|...|.+|+..+.
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 46666 888999999999999999999999875543
No 192
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.07 E-value=0.33 Score=40.41 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=43.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.++|+|+...........+..+|.+++|...+ ..++..+...+..+... .-..+-+|.|+++....
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------ 134 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA------ 134 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC------
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC------
Confidence 467889999864321112222234568888887764 34566666655554431 22246788899764321
Q ss_pred cCCChHHHHHHHhC
Q 014511 252 FGRGSGSQVVQQFG 265 (423)
Q Consensus 252 ~~~~~~~~~~~~~~ 265 (423)
...+++.+.++
T Consensus 135 ---~~~~~i~~~~~ 145 (183)
T 1moz_A 135 ---LSASEVSKELN 145 (183)
T ss_dssp ---CCHHHHHHHTT
T ss_pred ---CCHHHHHHHhC
Confidence 12456666655
No 193
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.06 E-value=0.099 Score=44.18 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=26.3
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 201 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 201 ~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+|.+++|+..............+.+...+.++ -+|.|+++..
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~ 146 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKMDKV 146 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGGS
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEEChhcC
Confidence 36777777765443333445566677777774 5777997643
No 194
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.05 E-value=0.037 Score=47.63 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=31.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
++++.++ |--|+||||.+..+|..+..+|++|+++-
T Consensus 8 g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4555555 77899999999999999999999999995
No 195
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.02 E-value=0.022 Score=48.72 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+++.+ .|-.|+||||++..++..+..+|++|+++-.
T Consensus 4 ~i~vi-~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVI-TGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEE-EESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 34444 4788999999999999999999999998743
No 196
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.33 Score=42.25 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~-piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV-AVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--C-EEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEECcccc
Confidence 3678999998643222222222445788888887654 4556666666655543 33 356788997653
No 197
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.01 E-value=0.089 Score=50.88 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=46.2
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+.+.|+|||+--.........+..+|.+++|+...... .......+..++..+.+.+-+++|+++..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 67899999864332223333345689999998887653 66677777777777775567888997643
No 198
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.00 E-value=0.026 Score=55.68 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~ 109 (423)
+.++.|+ |.+|+||||++.++|..++. .|.+|+++++...
T Consensus 203 G~liiI~-G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 203 SDLIIVA-ARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TCEEEEE-CCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3455555 99999999999999999986 6899999998753
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.00 E-value=0.3 Score=50.85 Aligned_cols=87 Identities=20% Similarity=0.040 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
++|-+=|||||+-.....-....+..+|++++|+....--...+...++.+.+.+++.+ +++|+++..... -.
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a~------~~ 155 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQGAN------FL 155 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSSTTCC------HH
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEccccccCcc------HH
Confidence 35667799998765543333344667899999998876666678888999988899854 556996532211 12
Q ss_pred ChHHHHHHHhCCCe
Q 014511 255 GSGSQVVQQFGIPH 268 (423)
Q Consensus 255 ~~~~~~~~~~~~~~ 268 (423)
...+++.+.++...
T Consensus 156 ~~~~ei~~~l~~~~ 169 (709)
T 4fn5_A 156 RVVEQIKKRLGHTP 169 (709)
T ss_dssp HHHHHHHHHHCSCE
T ss_pred HHHHHhhhhcccce
Confidence 46788888888543
No 200
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.98 E-value=0.21 Score=42.74 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 3678999997631111111112345788888877654 4555555555555432 333 56788998753
No 201
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.98 E-value=0.19 Score=42.43 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcee
Q 014511 176 ELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 249 (423)
.+.+.|+|+|+.-... .+....+..+|.+++|...+. .++..+...++.+.+ .+.+ +-+|.|+++......
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~-- 144 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQ-- 144 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCC--
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccce--
Confidence 4678999997632111 111222345788888887654 445555555444432 2444 567889976533111
Q ss_pred eccCCChHHHHHHHhCCC
Q 014511 250 YPFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 145 --v~~~~~~~~~~~~~~~ 160 (189)
T 1z06_A 145 --VPTDLAQKFADTHSMP 160 (189)
T ss_dssp --SCHHHHHHHHHHTTCC
T ss_pred --eCHHHHHHHHHHcCCE
Confidence 1123455666666654
No 202
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.98 E-value=0.015 Score=58.12 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~ 109 (423)
.++ +..+.+|+||||++.++|..++.+ |.+|+++++...
T Consensus 243 ~l~-li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 243 EVI-MVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CEE-EEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred eEE-EEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 445 555999999999999999999987 999999999763
No 203
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=94.96 E-value=0.12 Score=50.57 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=47.4
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+..+.+.|+|||+-..........+..+|.+++|+.....++. .....+..+...+++.+-+++|+++..
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 3568899999986443333333345568999999988876554 345555566667776567888998654
No 204
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.96 E-value=0.2 Score=41.99 Aligned_cols=68 Identities=6% Similarity=-0.032 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
+.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+.+. .-..+-+|.|+++.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 34678999998642211122222446788888887654 3666666655544331 22346778899764
No 205
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.13 Score=43.47 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+.-....+....+..+|.+++|..... .++..+...+..+.... ...+-+|.|+++.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 4678999998643211122222446788888887654 45555666666665431 2245678899765
No 206
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.91 E-value=0.085 Score=43.48 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcee
Q 014511 176 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~-~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 249 (423)
.+.+.++|+|+.-.... +.......+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++......
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-- 126 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSRE-- 126 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCC--
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhccc--
Confidence 46678999976432211 11111234688888776654 4555555555554432 455 457889976532111
Q ss_pred eccCCChHHHHHHHhCCC
Q 014511 250 YPFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 127 --~~~~~~~~~~~~~~~~ 142 (169)
T 3q85_A 127 --VSLEEGRHLAGTLSCK 142 (169)
T ss_dssp --SCHHHHHHHHHHTTCE
T ss_pred --CCHHHHHHHHHHcCCc
Confidence 1223455666666653
No 207
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.89 E-value=0.034 Score=49.03 Aligned_cols=39 Identities=5% Similarity=-0.035 Sum_probs=33.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+.++ |..|+||||++..+|..+...|.++..++++.
T Consensus 52 ~~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3456565 88999999999999999999999999998854
No 208
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.88 E-value=0.38 Score=44.96 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=45.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHH-HcC---CCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMF-SKL---KVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l-~~~---~~~~~gvV~N~~~~~~~~~~~ 249 (423)
..+.+.|+|||+.-....+....+..+|.+++|...+ ..++..+...+..+ ... +.+ +-+|.|+++....
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~---- 281 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA---- 281 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcc----
Confidence 4567899999874322112222234568888887764 45565555544433 322 344 5678899764321
Q ss_pred eccCCChHHHHHHHhCCC
Q 014511 250 YPFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (423)
...+++.+.++..
T Consensus 282 -----~~~~~i~~~~~~~ 294 (329)
T 3o47_A 282 -----MNAAEITDKLGLH 294 (329)
T ss_dssp -----CCHHHHHHHHTCT
T ss_pred -----cCHHHHHHHhchh
Confidence 2356777777643
No 209
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.85 E-value=0.18 Score=41.83 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=39.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 3568999998643222222222345788888887654 4555555555544432 333 56788998653
No 210
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.85 E-value=0.083 Score=47.54 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLA 91 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA 91 (423)
..|+|+ |..|+||||+.-.|.
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHh
Confidence 467777 799999999987764
No 211
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.85 E-value=0.16 Score=41.61 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
..+.+.++|+|+......+....+..+|.+++|...+ ..++..+...++.+.. .+.+ +-+|.|+++..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECcccc
Confidence 3567899999874322222222233568888887654 3455555555544433 2455 56788997653
No 212
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.83 E-value=0.15 Score=51.82 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=49.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCC
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 255 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 255 (423)
.|.+.|+|||+-..........+..+|.+++|+.............+..+...+++ +-+++|+++...... ..
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~~------~~ 144 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSADV------DR 144 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCCH------HH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccCH------HH
Confidence 47788999986433222222335578999999887654333344444455566777 567789976433110 12
Q ss_pred hHHHHHHHhCC
Q 014511 256 SGSQVVQQFGI 266 (423)
Q Consensus 256 ~~~~~~~~~~~ 266 (423)
..+++.+.++.
T Consensus 145 v~~el~~~lg~ 155 (600)
T 2ywe_A 145 VKKQIEEVLGL 155 (600)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHhhCC
Confidence 34566666664
No 213
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.79 E-value=0.24 Score=42.24 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 456889999874432222222234578888888765 34555566655555543 445 5678899765
No 214
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.78 E-value=0.16 Score=47.02 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=36.3
Q ss_pred CCCcEEEEcCCCCCC-hhh---------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTG-DIQ---------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~-~~~---------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.++++|||+ .. ... .....+..+|.+++|+.....+- ....+++.+...+.|.+ +++|+++.
T Consensus 54 ~~~~i~~iDTpG-~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~-~~~~i~~~l~~~~~P~i-lvlNK~D~ 128 (301)
T 1ega_A 54 GAYQAIYVDTPG-LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPVI-LAVNKVDN 128 (301)
T ss_dssp TTEEEEEESSSS-CCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH-HHHHHHHHHHSSSSCEE-EEEESTTT
T ss_pred CCeeEEEEECcC-CCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCH-HHHHHHHHHHhcCCCEE-EEEECccc
Confidence 456788999975 43 110 01112334677777776654332 22345566666677754 55698654
No 215
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.78 E-value=0.012 Score=50.11 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=26.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|+++|.+. |-.|+||||+|..||..| |.. ++|.|.
T Consensus 1 M~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 1 MAPKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp -CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 34566666 889999999999998876 443 678874
No 216
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.75 E-value=0.02 Score=49.62 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=28.3
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHH-----HCC-CcEEEEEec
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMG-ARVGIFDAD 107 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G-~~VlliD~D 107 (423)
.||+++.|+ |..|+|||+.|+.++..++ +.| .+|.+..+|
T Consensus 3 ~~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 3 AMAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp -CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred cceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 355666655 9999999999999877765 567 555555444
No 217
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.74 E-value=0.025 Score=52.90 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.|.++|.++ |-.|+||||++..||..+ ...+||+|-.
T Consensus 3 ~m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 455566655 889999999999998865 3688999854
No 218
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.73 E-value=0.39 Score=40.50 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc------CCCCEEEEEEecccccCCCce
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGKR 248 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~~~~~~ 248 (423)
.+.+.|+|+|+.-....+. ..+..+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+++......
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~- 144 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQ- 144 (187)
T ss_dssp EEEEEEEECCC---CCCTH-HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCS-
T ss_pred EEEEEEEECCCCCcchhHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCc-
Confidence 4667889997642211111 1234568888877665 4566666666555543 2455 568889987533111
Q ss_pred eeccCCChHHHHHHHhCC
Q 014511 249 YYPFGRGSGSQVVQQFGI 266 (423)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 145 ---v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 145 ---VTKAEGVALAGRFGC 159 (187)
T ss_dssp ---SCHHHHHHHHHHHTC
T ss_pred ---cCHHHHHHHHHHcCC
Confidence 112334556666654
No 219
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.18 Score=42.76 Aligned_cols=67 Identities=10% Similarity=0.155 Sum_probs=38.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 4578999998643222222222345688888877654 4555555554444332 345 56788997654
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.70 E-value=0.046 Score=47.54 Aligned_cols=41 Identities=32% Similarity=0.375 Sum_probs=34.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
...+|+|. |..|+||||++..|+..+...|.++..|..|.+
T Consensus 21 ~g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 21 GRQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp SCEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 44688888 899999999999999999876878888888754
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.69 E-value=0.027 Score=46.34 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.+.+.++ |..|+||||++..++..+...|+++..++..
T Consensus 36 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 4567776 8899999999999999998889888888754
No 222
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.68 E-value=0.097 Score=54.41 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=39.4
Q ss_pred CcEEEEcCCCCCCh----hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 177 LDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 177 yD~iiiD~pp~~~~----~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+++.|+|||+ +.. .......+..+|.+++|+.++.. +..+...+.+.+...+.+ +-+|+|+++..
T Consensus 174 ~~l~LiDTPG-l~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPG-LNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCC-HHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred CCeEEEECCC-CCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccc
Confidence 6899999976 322 11222224457999999887543 333443333455555666 66788997653
No 223
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.67 E-value=0.031 Score=46.97 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=25.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|.+. |-.|+||||++..|+.. ......+|.|.
T Consensus 2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 3455554 99999999999988872 23466777764
No 224
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.67 E-value=0.16 Score=42.63 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=39.2
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 243 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~ 243 (423)
+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+. .+-+|.|+++..
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 128 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI-VIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECcccc
Confidence 578899998643322222222445788888887654 455555555554443 233 367788998753
No 225
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.65 E-value=0.043 Score=47.65 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=29.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+++|++. |-.|+||||++..||..|...|.+|..++
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 3567666 78899999999999999998899985543
No 226
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.64 E-value=0.18 Score=44.60 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLA 91 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA 91 (423)
..|+++ |..||||||+.-.|.
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHc
Confidence 467777 899999999987665
No 227
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.61 E-value=0.35 Score=43.18 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=36.6
Q ss_pred CCCcEEEEcCCCCCChhh-------hh-----hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC------CCCEEEEE
Q 014511 175 GELDYLVIDMPPGTGDIQ-------LT-----LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------KVPCIAVV 236 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~-------~~-----~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~------~~~~~gvV 236 (423)
....+.|+|||+-..... .. ......+|.+++|+..+..... ....++.+.+. +. .+-++
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~-~iilv 145 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKW-MVIVF 145 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGG-EEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhcc-EEEEE
Confidence 456789999986432100 00 0111457888888887654332 23344444432 33 35677
Q ss_pred Eeccccc
Q 014511 237 ENMCHFD 243 (423)
Q Consensus 237 ~N~~~~~ 243 (423)
.|+.+..
T Consensus 146 ~nK~Dl~ 152 (247)
T 3lxw_A 146 TRKEDLA 152 (247)
T ss_dssp ECGGGGT
T ss_pred EchHhcC
Confidence 7987653
No 228
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.58 E-value=0.063 Score=52.53 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCCCCC-------h-hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTG-------D-IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~-------~-~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+..+.|+|||+-.. . .......+..+|.+++|+..... +.. -....+.+++.+.+ +-+|.|+++.
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~-d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCC-EEEEEECccC
Confidence 456789999976421 0 11112223457888888776432 222 23455666666766 4577799764
No 229
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.54 E-value=0.15 Score=44.38 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChh-----------h---hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecc
Q 014511 175 GELDYLVIDMPPGTGDI-----------Q---LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMC 240 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-----------~---~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 240 (423)
..+.+.|+|||+ .++. . ..+.....+|.+++|+.....-.......++.+...+.+ +-+|+|++
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEecc
Confidence 467899999986 3221 0 011111225678888776543223344566777777777 45778997
Q ss_pred cc
Q 014511 241 HF 242 (423)
Q Consensus 241 ~~ 242 (423)
+.
T Consensus 155 Dl 156 (223)
T 4dhe_A 155 DK 156 (223)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 230
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.49 E-value=0.23 Score=48.50 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCCcEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 014511 175 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~---------~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 241 (423)
.+..+.|+|||+-... .......+..+|.+++|+.... .+..+ ..+.+++++.+.++ -+|.|+++
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~~~p~-ilv~NK~D 121 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKSTVDT-ILVANKAE 121 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHHTCCE-EEEEESCC
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCE-EEEEeCCC
Confidence 4456788999763211 0112223456788888887543 22221 23445566566664 57779964
No 231
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.48 E-value=0.14 Score=43.57 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... +. .+-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~-piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA-ELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECcccc
Confidence 4678999998643222222222345788888887654 4555565555555543 33 366888998754
No 232
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.48 E-value=0.049 Score=61.58 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..++.|+ +..|+||||++.++|...++.|.+|++||++...
T Consensus 383 G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4566666 9999999999999999999999999999998643
No 233
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.46 E-value=0.32 Score=41.19 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=48.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+ ...+..++.. +.+ +-+|.|+++....... .
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--~ 146 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD--D 146 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT--C
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC--c
Confidence 4567899998632222222222445788888877654 445454 3444555443 334 5678899875432111 1
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 147 ~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 147 VTKQEGDDLCQKLGCV 162 (194)
T ss_dssp CCHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHhcCCC
Confidence 2224566677777754
No 234
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.46 E-value=0.043 Score=54.98 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=33.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.+.+..|-.|+||||++..||..|...+.++.+++.|-
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 344455599999999999999999998899999999885
No 235
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.39 E-value=0.26 Score=42.07 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 242 (423)
+++.+.++|+|+.-....+....+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 138 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDR 138 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence 34678899998643211121122345788888877654 466666666555432 2455 5678899764
No 236
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.39 E-value=0.053 Score=47.00 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=29.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+++|++. |-.|+||||++..||..|...+.+|.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567776 78899999999999999998888885443
No 237
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.39 E-value=0.03 Score=48.46 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=26.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
||++|+++ |..|+||||++..||. .|.. ++|+|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 45678887 8899999999988876 4654 568875
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.35 E-value=0.022 Score=49.24 Aligned_cols=33 Identities=36% Similarity=0.425 Sum_probs=25.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|++|+++ |..|+||||++..||. + | +-++|+|-
T Consensus 1 m~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 1 MKRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 3578887 7899999999998887 4 5 45677764
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.31 E-value=0.037 Score=52.07 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
++|+|+ |-.|+||||+|..||..| .+.+|++|-.
T Consensus 8 ~lI~I~-GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIV-GPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEE-CCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 456555 889999999999999876 3789999965
No 240
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.28 E-value=0.84 Score=39.40 Aligned_cols=68 Identities=4% Similarity=-0.071 Sum_probs=40.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHH-HHHHHHHHHcC--CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFID-VAKGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~-~~~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++.. +...++.+... +.+ +-+|.|+++..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 45678899998643221222222446788888877654 45555 45555666544 344 56778997653
No 241
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.25 E-value=0.23 Score=42.40 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=38.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-....+....+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCc
Confidence 34678999998632211111122345788888887644 445555554444332 2344 56788997654
No 242
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.18 E-value=0.059 Score=50.37 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=34.5
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHH--CCCcEEEEEecCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 110 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~--~G~~VlliD~D~~~ 110 (423)
+.+.+|++. |-.|+||||++..|+..+.. .+.+|.++..|.+.
T Consensus 90 ~~p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 344577777 88999999999999988874 35689999999753
No 243
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.17 E-value=0.038 Score=49.81 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|++|+|. |-.|+||||+|..||..+ |. .+++.|-
T Consensus 1 M~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 1 MLLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 3556655 889999999999998876 33 4677775
No 244
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=94.15 E-value=0.1 Score=56.81 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+ ..+. ......+..+|.+++|+..+..........+..+...+++.+-+++|+++..
T Consensus 357 ~~~kI~IIDTPG-HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCC-HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 467899999976 3322 2222234467999999887654444455556666677888667888997643
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.11 E-value=0.046 Score=51.71 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=31.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 108 (423)
..++.|+ |..|+||||++.++|...+. .|.+|++||++.
T Consensus 122 G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3455555 99999999999999998654 578999999976
No 246
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.11 E-value=0.057 Score=46.70 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=26.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
++|+|. |-.|+||||++..||..|...| +|...
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 456555 8899999999999999998777 66443
No 247
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.10 E-value=0.046 Score=55.45 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=34.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~~VlliD~D~ 108 (423)
.+.+|.|. |-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 395 ~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 44566666 8899999999999999999888 8999999875
No 248
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.10 E-value=0.042 Score=46.74 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=26.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
|+++|++. |-.|+||||++..||..| | ...+|.|
T Consensus 5 ~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 55677766 889999999999998876 3 3567775
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.07 E-value=0.033 Score=52.26 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=32.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC------CCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~~ 109 (423)
..++.|+ |..|+||||++.++|...+.. |.+|++||++..
T Consensus 107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3566666 889999999999999987655 789999999853
No 250
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.04 E-value=0.026 Score=47.32 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=26.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|+++|+++ |..|+||||++..||..+ | ..++|.|.
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~--~~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---C--CCEEeccH
Confidence 44677777 889999999999888765 3 35677763
No 251
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.01 E-value=0.058 Score=50.15 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=34.3
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHH--HCCCcEEEEEecCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYG 110 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~ 110 (423)
..+.+|+++ |..|+||||++..|+..+. -.+-+|.+|++|-..
T Consensus 78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 345788888 8889999999999998886 334479999998643
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.99 E-value=0.055 Score=50.31 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D 107 (423)
.+-+.++ |..|+|||+++..+|..+. +.|++|+.+.+.
T Consensus 152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3556665 8899999999999999999 999999998764
No 253
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.97 E-value=0.077 Score=60.88 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..++.++ +.+|+||||++.++|..+++.|.+|++||+....
T Consensus 383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 3566665 9999999999999999999999999999998643
No 254
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.95 E-value=0.029 Score=48.32 Aligned_cols=36 Identities=36% Similarity=0.391 Sum_probs=26.9
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
++.+++|+++ |..|+||||++..||.. |. .++|+|.
T Consensus 5 ~~~~~~I~i~-G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGIT-GNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp -CCCEEEEEE-ECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred ccCceEEEEE-CCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 3455678777 88999999999888764 64 4678884
No 255
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.94 E-value=0.68 Score=39.33 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~-~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+++.-.... +....+..+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhcc
Confidence 45678889975432111 1111123468888877654 4455666666555543 2455 45788997653
No 256
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.94 E-value=0.06 Score=49.14 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=29.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC----------CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM----------GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~----------G~~VlliD~D~ 108 (423)
..+++++ |.+|+||||++.++|..++.. +.+|++++...
T Consensus 30 G~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3577777 899999999999999977642 35677776653
No 257
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.21 Score=42.21 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=16.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLA 91 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA 91 (423)
..|+|+ |..|+||||+...|.
T Consensus 49 ~~i~vv-G~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIA-GPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHh
Confidence 467777 789999999988764
No 258
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.90 E-value=0.057 Score=55.10 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=35.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
++++|.|. |-.|+||||++..||..|..+|.++..+|.|.-.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 44566665 8999999999999999999999999999877543
No 259
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.89 E-value=0.047 Score=47.10 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.5
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+..+++|+|. |-.|+||||++..||..+ |. ..+|+|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 3456777777 889999999999998764 43 567776
No 260
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.87 E-value=0.6 Score=40.71 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
..+.+-|.||++.-....+.-.-...++.+++|... +..|+..+...++.+... ++ .+-+|.|+++.....
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~-piilVgNK~Dl~~~r---- 134 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV-IIMLVGNKTDLADKR---- 134 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS-EEEEEEECTTCGGGC----
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC-eEEEEeeccchHhcC----
Confidence 346678999976432222222224456777777554 456777777777666543 33 456788997653321
Q ss_pred ccCCChHHHHHHHhCCC
Q 014511 251 PFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (423)
....+..+++++.++.+
T Consensus 135 ~V~~~e~~~~a~~~~~~ 151 (216)
T 4dkx_A 135 QVSIEEGERKAKELNVM 151 (216)
T ss_dssp CSCHHHHHHHHHHHTCE
T ss_pred cccHHHHhhHHHHhCCe
Confidence 12334567788888864
No 261
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.85 E-value=0.82 Score=37.63 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCccc
Confidence 3578999998643222222222345788888776544 345555544444432 2344 56788997653
No 262
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.85 E-value=0.048 Score=50.62 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=31.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC--CCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~ 108 (423)
++. ..|-.|+||||++.+++..++++ |.+|+.||..-
T Consensus 30 ite-I~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEE-EEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEE-EECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 444 44789999999999999999886 88999999854
No 263
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.84 E-value=0.041 Score=50.76 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=31.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCC--CcEEEE-EecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--ARVGIF-DADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G--~~Vlli-D~D~~ 109 (423)
...+|+|+ |..|+||||++..|+..|...| .++..+ ..|..
T Consensus 30 ~~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 30 CPLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 34677877 8899999999999999998654 444444 88864
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.80 E-value=0.046 Score=47.09 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
++.|++. |-.|+||||++..||..| .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 3577777 888999999999998877 4677776553
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.78 E-value=0.042 Score=47.41 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=26.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|++. |-.|+||||++..||..| |.. .+|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 4577766 899999999999999887 443 456664
No 266
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.76 E-value=0.052 Score=48.08 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=31.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 108 (423)
..+++++ |..|+||||++..+|...+. .+.+|+.+|...
T Consensus 24 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3577777 89999999999999986443 367899999875
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.75 E-value=0.067 Score=46.39 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=31.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+.+|++. |..|+||||++..|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 4688888 77899999999999887743 68999998754
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.70 E-value=0.02 Score=49.78 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+|+|. |-.|+||||++..|+..|...|.+|.++..
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56666 778999999999999999888888887753
No 269
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.67 E-value=0.82 Score=38.69 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChhhhh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~---~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|+|+.-...... ...+..+|.+++|...+.........+.+.+... +.+ +-+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl 141 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDG 141 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEecccc
Confidence 45789999998643311111 1224467999999887764333444443444332 344 5678899764
No 270
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.65 E-value=0.072 Score=46.32 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
|++-|+|= |--|+||||.+..|+..|. +|++|.+.-
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 56778887 6778999999999999996 588887753
No 271
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=93.63 E-value=0.17 Score=50.31 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|||+--............+|.+++|+..+..........+..+...+++ +-+++|+++..
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence 45678999987432222222224457889998876553333444555666677888 66788997653
No 272
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=93.61 E-value=0.18 Score=51.36 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCC
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 255 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 255 (423)
.|.+-|+|||+-..........+..+|.+++|+.............+..+...+++ +-+|+|+++..... ...
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~------~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD------PER 142 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC------HHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc------HHH
Confidence 57889999986433222222334567999999887543222333344444556777 55778997653311 012
Q ss_pred hHHHHHHHhCC
Q 014511 256 SGSQVVQQFGI 266 (423)
Q Consensus 256 ~~~~~~~~~~~ 266 (423)
..+++.+.++.
T Consensus 143 v~~ei~~~lg~ 153 (599)
T 3cb4_D 143 VAEEIEDIVGI 153 (599)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhCC
Confidence 45667777764
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.52 E-value=0.051 Score=45.22 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=24.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
++|++. |-.|+||||++..||..+ |+. ++|.|.
T Consensus 2 ~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 456555 889999999999988776 433 466664
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.51 E-value=0.053 Score=46.15 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+++|.+. |-.|+||||++..||..| |.. ++|.|
T Consensus 5 ~~~I~l~-G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVT-GHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 3455555 889999999999999877 444 45654
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.48 E-value=0.087 Score=44.11 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=26.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
+++|++. |-.|+||||++..|+..+ | ..++|.|.-
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDFL 42 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence 4567666 889999999999998876 4 356777753
No 276
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.45 E-value=0.077 Score=44.63 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=26.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH-------CCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~-------~G~~VlliD~ 106 (423)
+.+.++ |..|+||||++..+|..+.. .+.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 445554 99999999999999999876 3455555544
No 277
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.42 E-value=0.039 Score=47.24 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|++. |-.|+||||++..||..| | ...+|.|-
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 4567776 889999999999999877 3 45677763
No 278
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.41 E-value=0.043 Score=47.38 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=26.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.++|+++ |-.|+||||++..||..| | +-++|.|.
T Consensus 2 ~~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 2 RGIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 3477777 888999999999998876 3 45678774
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.36 E-value=0.065 Score=45.58 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++|++. |-.|+||||++..||..+ |. ..+|.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 455555 899999999999998776 43 457776
No 280
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.33 E-value=0.045 Score=47.45 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=28.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
++++|+++ |..|+||||++..|+..+. .+.++|.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 45678887 7789999999887766431 5889999864
No 281
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.31 E-value=0.14 Score=44.62 Aligned_cols=36 Identities=14% Similarity=-0.032 Sum_probs=31.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
++ |-|..|--|.||||.+..+|..+..+|++|+++-
T Consensus 28 G~-l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GW-IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CE-EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CE-EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45 4455588899999999999999999999999985
No 282
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=93.29 E-value=0.24 Score=52.71 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+-..........+..+|.+++|+.............+..+...++++ -+|+|+++..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCcc
Confidence 3678899999875432222233355689999998876543333445555555667775 4788997643
No 283
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=1.1 Score=38.92 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=36.6
Q ss_pred CCcEEEEcCCCCCC-hhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~-~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~ 243 (423)
.+.++++|++..-+ ...+.......++++++|..- +..++..+......+.+. +.+ +-+|.|+++..
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHh
Confidence 34567888864322 111111112235666666544 456777776666555542 455 56788997653
No 284
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=93.24 E-value=0.2 Score=48.55 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=40.8
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.|+|||+--.........+..+|.+++|+..+... .......+..++.++.+.+-+++|+++.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 56899999763221112222234579999998876532 3344455555666666656788899764
No 285
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.18 E-value=0.19 Score=46.50 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=37.8
Q ss_pred CCCcEEEEcCCCCCC-------------hhhhhhhhhcCCCeEEEEeCCCcchH--HHHHHHHHHHHcCCCCEEEEEEec
Q 014511 175 GELDYLVIDMPPGTG-------------DIQLTLCQVVPLTAAVIVTTPQKLAF--IDVAKGVRMFSKLKVPCIAVVENM 239 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~-------------~~~~~~~~~~~~d~~iiv~~p~~~s~--~~~~~~~~~l~~~~~~~~gvV~N~ 239 (423)
..++++|+|||+-.. ........+..+|.+++++.+....+ .....+++.+...+.++ -+|+|+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~-i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRT-IGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSE-EEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcE-EEEEcC
Confidence 347899999987432 01111222345787877776522111 22235566666666664 566799
Q ss_pred cccc
Q 014511 240 CHFD 243 (423)
Q Consensus 240 ~~~~ 243 (423)
++..
T Consensus 208 ~Dl~ 211 (315)
T 1jwy_B 208 LDLM 211 (315)
T ss_dssp TTSS
T ss_pred cccC
Confidence 7643
No 286
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.16 E-value=0.77 Score=43.37 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCCCh-------------hhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEecc
Q 014511 176 ELDYLVIDMPPGTGD-------------IQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMC 240 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~-------------~~~~~~~~~~~d~~iiv~~p~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 240 (423)
..++.|+|||+-... ..+....+..+|.+++++.+.. ........+++.+...+.+.+ +|+|++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEeCC
Confidence 568999999863321 1222222445787877766532 222334455555555566654 566997
Q ss_pred cccC
Q 014511 241 HFDA 244 (423)
Q Consensus 241 ~~~~ 244 (423)
+...
T Consensus 214 Dl~~ 217 (360)
T 3t34_A 214 DLMD 217 (360)
T ss_dssp GGCC
T ss_pred ccCC
Confidence 6543
No 287
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.14 E-value=0.12 Score=45.25 Aligned_cols=35 Identities=31% Similarity=0.268 Sum_probs=30.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+.|+|. |-.|+||||.+..|+..|..+|++|.+..
T Consensus 7 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 466665 88899999999999999999999997654
No 288
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.10 E-value=0.86 Score=39.72 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCCC----hh----hhhhhh-hcCCCeEEEEeCCCcc---hHHHHHHHHHHHHcC--CCCEEEEEEecc
Q 014511 175 GELDYLVIDMPPGTG----DI----QLTLCQ-VVPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMC 240 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~----~~----~~~~~~-~~~~d~~iiv~~p~~~---s~~~~~~~~~~l~~~--~~~~~gvV~N~~ 240 (423)
..+.+.|+|||+... .. ...... ...+|.+++|...+.. ........+..+... +.+ +-+|.|++
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~ 152 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKI 152 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECG
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCc
Confidence 346789999987522 10 001111 2345777877766442 222333455555554 555 56788998
Q ss_pred ccc
Q 014511 241 HFD 243 (423)
Q Consensus 241 ~~~ 243 (423)
+..
T Consensus 153 Dl~ 155 (228)
T 2qu8_A 153 DKC 155 (228)
T ss_dssp GGC
T ss_pred ccC
Confidence 654
No 289
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.07 E-value=0.078 Score=45.58 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=26.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+|+++ |..|+||||++..||..+ | .-+||+|-.
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 467777 788999999999888764 5 456898864
No 290
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.03 E-value=0.08 Score=48.48 Aligned_cols=36 Identities=36% Similarity=0.438 Sum_probs=27.3
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
++.+++|+|+ |-.|+||||++..|+ .+ |. -+||+|.
T Consensus 72 ~~~~~iI~I~-G~~GSGKSTva~~La-~l---g~--~~id~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLT-GISGSGKSSVAQRLK-NL---GA--YIIDSDH 107 (281)
T ss_dssp CTTCEEEEEE-ECTTSCHHHHHHHHH-HH---TC--EEEEHHH
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHH-HC---CC--cEEehhH
Confidence 3446778877 888999999999998 33 65 4588875
No 291
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=93.02 E-value=0.22 Score=49.32 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.+.|+|||+ ..+. ......+..+|.+++|+..+..-.......+..++..+++. -+++|+++.
T Consensus 71 ~~~~i~iiDtPG-h~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPG-HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSS-HHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 356799999976 3322 22223345679999999876543344555566677788887 788899764
No 292
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.02 E-value=1.5 Score=37.60 Aligned_cols=68 Identities=9% Similarity=-0.029 Sum_probs=38.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC-CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL-KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~-~~~~~~l~~~-~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+ ...+..+.+. .-..+-+|.|+++..
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 4678999998632211122222345788888877653 455555 3444555543 222356788997653
No 293
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.98 E-value=0.33 Score=40.44 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 122 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 122 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHH
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEccccc
Confidence 4567899998642211122222345788888887654 4555554 355555543 455 56788997653
No 294
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.96 E-value=0.074 Score=52.93 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH-C-CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~-G~~VlliD~D~ 108 (423)
..+|.+. |-.|+||||++..||..|.. + |..+-++|.|.
T Consensus 395 ~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3566655 88899999999999999987 6 57788999887
No 295
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.89 E-value=0.084 Score=45.44 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=26.2
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.++++|++. |-.|+||||++..||..+ |.. ++|.|
T Consensus 18 ~~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CSCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 344566666 889999999999999877 444 46665
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.85 E-value=0.081 Score=45.09 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=25.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|++. |-.|+||||++..||..| |. ..+|.|-
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~--~~i~~d~ 42 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GY--THLSTGD 42 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEcHHH
Confidence 4567776 888999999999999876 44 3677763
No 297
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.81 E-value=0.069 Score=49.10 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=27.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..+.+.+|-.|+||||++..|+..+. .....||.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHh
Confidence 45666679999999999999987652 24577888754
No 298
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.77 E-value=0.064 Score=48.26 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+++|.+ .|-.|+||||++..|+..+ +..+.++|.|...
T Consensus 32 ~~~i~l-~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILL-GGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEE-ESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGG
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHH
Confidence 345555 4899999999999998765 3356788888643
No 299
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.77 E-value=0.28 Score=42.07 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=40.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 34567799997642211222222446788888877654 4555554 455555544 455 56778997654
No 300
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.76 E-value=0.08 Score=44.40 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAG 96 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~ 96 (423)
+.+. ..|..|+||||++..+|..+..
T Consensus 44 ~~vl-l~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPI-LLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEE-EESCGGGCHHHHHHHHHHHHHT
T ss_pred CceE-EECCCCCCHHHHHHHHHHHHHh
Confidence 3454 4589999999999999999876
No 301
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=92.70 E-value=0.67 Score=46.44 Aligned_cols=66 Identities=12% Similarity=-0.025 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-....+...-+..+|.+++|..... .......++.+...+ .++ -+|.|+++..
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~--~~~~~~~~~~l~~~~~~~pv-ilV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT--DSNKHYWLRHIEKYGGKSPV-IVVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG--GGGHHHHHHHHHHHSSSCCE-EEEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC--chhHHHHHHHHHHhCCCCCE-EEEEECCCcc
Confidence 46789999998732211111111335788888886543 345556666666543 564 5888997654
No 302
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=92.69 E-value=0.25 Score=49.44 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
...+.|+|||+--....+....+..+|.+++|+..+..........+..+...+.| +-+++|+++..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEeccccc
Confidence 34578899986432222222224457999999988776666667777888888888 56778998653
No 303
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.61 E-value=0.25 Score=43.08 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=30.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+.+..+ .|--|+||||....++..+..+|++|+++-.
T Consensus 28 G~I~vi-tG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIECI-TGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CEEEEE-EECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 345544 4777999999999999999999999999843
No 304
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.60 E-value=0.12 Score=45.46 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=34.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~ 110 (423)
.++.|+|. |-.|+||||++..|+..|.. .|++|.++--.|.+
T Consensus 20 ~~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 20 GSMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 34566666 88899999999999999998 99999885556643
No 305
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=92.59 E-value=0.043 Score=55.97 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+-..........+..+|.+++|+...... .......+..+...+++.+-+|+|+++..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 4578899999863221111222233568888877655321 22344555667778887677888998653
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.58 E-value=0.09 Score=43.72 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=26.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.|++|.+. |-.|+||||++..||..| |.+ ++|+|.
T Consensus 6 ~~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 6 HMQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp --CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred ccceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 35678877 889999999999998876 444 467765
No 307
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.56 E-value=1.1 Score=37.35 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 34678899997632211111222345788888877653 455555 3444555442 344 56788997653
No 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.55 E-value=0.14 Score=45.47 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~ 108 (423)
..++++. |..|+||||+...++.... ..+.++++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4678887 8999999999999997555 6677888888754
No 309
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.50 E-value=0.051 Score=50.61 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=28.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+++ +..|.+|+||||++.++|.. .|.+|+.++++
T Consensus 124 svi-LI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMV-IVTGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEE-EEECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred cEE-EEEcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 444 45699999999999999987 67899999984
No 310
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.48 E-value=0.13 Score=52.20 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=29.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
+.+..|-+|+||||++..++..+...|++|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 455569999999999999999999999999986
No 311
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.46 E-value=0.072 Score=44.23 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=24.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.|.+. |-.|+||||++..||..| |.. ++|+|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECcH
Confidence 45565 889999999999998876 444 567764
No 312
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.45 E-value=0.38 Score=41.74 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccccC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDA 244 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~ 244 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+++...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD 133 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcccc
Confidence 35678999998632111111112335788888877654 4555555555555443 455 457889976543
No 313
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.37 E-value=0.85 Score=38.37 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 135 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLR 135 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTST
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 4678899998643222222222445788888887654 4455555 455555543 555 55888997653
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.36 E-value=0.13 Score=44.20 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=26.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|++. |-.|+||||++..|+..+ | ..++|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 3567776 899999999999999877 5 35677765
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.33 E-value=0.1 Score=44.30 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=25.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|.++ |-.|+||||++..||..+ .| .-++|+|-
T Consensus 10 ~~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d~ 44 (184)
T 1y63_A 10 GINILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVGK 44 (184)
T ss_dssp SCEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHHH
Confidence 3466666 889999999999888763 24 56688873
No 316
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.21 E-value=0.15 Score=45.44 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-----G~~VlliD~D~ 108 (423)
+.+|++. |..|+||||++..|+..+..- +.++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 4688888 889999999999999877321 34678888875
No 317
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.20 E-value=0.11 Score=45.89 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=26.7
Q ss_pred ccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 65 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 65 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
....++.|.|. |..|+||||++..||..| | ...+|+|
T Consensus 12 ~~~~~~~I~l~-G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 12 ESPKGVRAVLL-GPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp --CCCCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 33445667776 889999999999999887 3 3456664
No 318
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.18 E-value=0.083 Score=46.20 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++.|.|. |-.|+||||++..||..| |. -.+|.|
T Consensus 5 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 5 KHNLILI-GAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 3466666 888999999999999887 44 346654
No 319
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.17 E-value=0.16 Score=44.93 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
+++.|+|. |-.|+||||++..|+..|.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 45677766 88899999999999999988 8888654
No 320
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.14 E-value=0.14 Score=47.77 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=31.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
..+.++ |..|+||||++..+|..+...|.+++.+++.
T Consensus 38 ~~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SSEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345565 8889999999999999999889999999865
No 321
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.11 E-value=0.11 Score=45.34 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++.|.+. |-.|+||||++..||..| |. ..+|.|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 4567666 889999999999999877 33 456664
No 322
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.02 E-value=0.92 Score=37.50 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+ ..++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 125 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLR 125 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhh
Confidence 456779999864322222222244578888888765 44555555 455555543 455 55788997653
No 323
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.95 E-value=0.11 Score=43.65 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+.|.+. |-.|+||||++..||..+ |. ..+|.|
T Consensus 12 ~~i~i~-G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 12 PNILLT-GTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 456555 899999999999998876 33 456665
No 324
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.94 E-value=0.087 Score=49.18 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=30.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH------------HCC----CcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA------------GMG----ARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La------------~~G----~~VlliD~D~~ 109 (423)
..++.|+ |..|+||||++.++|...+ ..| .+|++||++..
T Consensus 98 g~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 98 QSVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 3455555 8899999999999998643 245 79999998753
No 325
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.94 E-value=0.19 Score=46.58 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCCh-----hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~-----~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 243 (423)
+.+.+.|+|+|+.-.. .......+..+|.+++|...+. .+...+....+.+..+ +.+ +-+|.||++..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 3567899999763211 0111111345788888887654 4556665444444332 444 56788997653
No 326
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.92 E-value=0.25 Score=42.73 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAY 92 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~ 92 (423)
..|+|. |..|+||||+...|..
T Consensus 13 ~~i~~~-G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIA-GPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHhc
Confidence 466777 8899999999887653
No 327
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.86 E-value=0.22 Score=42.87 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=28.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
|+|= |--|+||||.+..|+..|..+|++|.+..
T Consensus 3 I~~E-G~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4554 77799999999999999999999998764
No 328
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.86 E-value=0.22 Score=50.20 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCh-----------hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 178 DYLVIDMPPGTGD-----------IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 178 D~iiiD~pp~~~~-----------~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
.++|||||+-... .......+..+|.+++|+.+... ........++.+.+.+.+ +-+|+|+++..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCcc
Confidence 5799999864321 01111123457999999988763 334455666677666555 56788997643
No 329
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.79 E-value=0.09 Score=43.64 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 102 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 102 (423)
+|++. |-.|+||||++..| .+.|..++
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEE
Confidence 55555 99999999999988 55677654
No 330
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.69 E-value=0.15 Score=57.75 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=34.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+|.++ +..|+||||++.++|..+++.|.+|+++++.-.
T Consensus 733 ~lVlI~-G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 733 RIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred ceEEEE-CCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 456555 999999999999999999999999999998764
No 331
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.68 E-value=0.39 Score=41.48 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=38.1
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 243 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 243 (423)
+.+.|+|+|+.-....+....+..+|.+++|...+. .+...+...+..+... +.+ +-+|.|+++..
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 678999998632211111122345788888877654 4445555555555432 455 55788997643
No 332
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.68 E-value=0.18 Score=44.87 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=28.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCc-EEEE
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIF 104 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~-Vlli 104 (423)
+.|+|. |-.|+||||.+..|+..|...|++ |.+.
T Consensus 28 ~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 566666 788999999999999999999999 5554
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.59 E-value=0.071 Score=44.93 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=18.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 102 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 102 (423)
+++|.+. |-.|+||||++..||..| |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 3566665 889999999999887655 55544
No 334
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=91.49 E-value=0.15 Score=49.39 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=36.4
Q ss_pred CceEEEEee---CCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCC
Q 014511 68 ISNIVAVSS---CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 118 (423)
Q Consensus 68 ~~kvI~v~s---~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~ 118 (423)
..|.|.|++ ..-|.||||+++.|+.+|.+.|+++.+. .+.||+.-.||
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSlGP~FG 92 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSLGPTLG 92 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCHHHHHH
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCCCCcCC
Confidence 467776665 4779999999999999999999998753 45666543333
No 335
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.47 E-value=0.16 Score=47.07 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=26.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+.+.+|-.|+||||++..||..+ ..-+|.+|-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 444556889999999999998765 4578888853
No 336
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.41 E-value=0.14 Score=47.00 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=24.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|.+ .|-.|+||||++..|+..+ . ....||.|.
T Consensus 2 ~~~I~l-~G~~GsGKST~a~~L~~~~--~--~~~~i~~D~ 36 (301)
T 1ltq_A 2 KKIILT-IGCPGSGKSTWAREFIAKN--P--GFYNINRDD 36 (301)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHS--T--TEEEECHHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHhC--C--CcEEecccH
Confidence 345555 4999999999999888732 2 356777763
No 337
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.37 E-value=1.8 Score=40.83 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=27.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD 105 (423)
..+|+|+ |..|+||||+...|+..+... |.+++.++
T Consensus 123 ~g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 123 RGLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 3466666 899999999999999988764 65665544
No 338
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.37 E-value=0.14 Score=43.45 Aligned_cols=34 Identities=41% Similarity=0.451 Sum_probs=24.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++|++. |..|+||||++..||.. .+...+.+|.|
T Consensus 10 ~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 566666 89999999999988764 23345556554
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.35 E-value=0.16 Score=42.86 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=24.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++.|++. |-.|+||||++..||..+ |. ..+|.|
T Consensus 4 g~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 3466666 889999999999998876 43 456765
No 340
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.32 E-value=0.2 Score=51.59 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+++..|-+|+|||++.+++...|.++|.+||+.-
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 6777799999999999999999999999999864
No 341
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.31 E-value=0.27 Score=45.68 Aligned_cols=42 Identities=33% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHC-C-CcEEEEEecCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVY 109 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G-~~VlliD~D~~ 109 (423)
..+.+|+|. |..|+||||++-.|+..+... | .+|.+|-.|..
T Consensus 88 ~~g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 345788887 889999999999999988753 5 57888888764
No 342
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.30 E-value=0.17 Score=44.75 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC----CCcEEEEE
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 105 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~----G~~VlliD 105 (423)
+.|+|. |-.|+||||.+..|+..|... |++|.+.-
T Consensus 26 ~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 466665 889999999999999999988 99997543
No 343
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.25 E-value=0.31 Score=43.89 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=17.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLA 91 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA 91 (423)
..|++. |..|+||||+.-.|.
T Consensus 37 ~~I~lv-G~~g~GKSSLin~l~ 57 (262)
T 3def_A 37 MTVLVL-GKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHh
Confidence 356666 899999999988776
No 344
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.20 E-value=0.15 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=26.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
++|+|+ |-.|+||||++..||..| ..-+||+|-.
T Consensus 41 ~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 556555 889999999999998754 4678999965
No 345
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.18 E-value=0.1 Score=42.34 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=27.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|.++ |..|+|||++|..++....+.+...+ +++..
T Consensus 27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 4455 88999999999999887776677777 77753
No 346
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.10 E-value=1.4 Score=43.16 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCC---------CChhh-h-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPG---------TGDIQ-L-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~---------~~~~~-~-~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
....+.|+|||+- ..... + ....+..+|.+++|...............+++...+.+ +-+|.|+++..
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 319 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAV 319 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGS
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcC
Confidence 3446889999762 11111 1 11123456888888877654444555666777776766 45788998754
Q ss_pred C
Q 014511 244 A 244 (423)
Q Consensus 244 ~ 244 (423)
.
T Consensus 320 ~ 320 (456)
T 4dcu_A 320 D 320 (456)
T ss_dssp C
T ss_pred C
Confidence 3
No 347
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.06 E-value=0.19 Score=43.36 Aligned_cols=29 Identities=24% Similarity=0.095 Sum_probs=22.8
Q ss_pred ccCCceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 65 LQKISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 65 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
+..++++|+|+ ||.|+||+|+|--+...+
T Consensus 7 ~~~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 7 GGAPRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp BCCCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 34566778877 999999999998776655
No 348
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.06 E-value=0.19 Score=47.69 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=31.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC--------CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--------GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~--------G~~VlliD~D~ 108 (423)
.+.+.++ |.+|+||||++..++..+... +..++.+++..
T Consensus 45 ~~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 3455555 899999999999999998765 78888888643
No 349
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.02 E-value=0.24 Score=48.70 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCC-cEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 104 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~-~Vlli 104 (423)
..+..|-.|+||||++..++..|...|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5555689999999999999999999887 67766
No 350
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.94 E-value=0.31 Score=45.01 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
|.++| +.+|-.|+||||++..||..+ ..-+|.+|-.
T Consensus 9 ~~~~i-~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAI-FLMGPTASGKTALAIELRKIL-----PVELISVDSA 44 (316)
T ss_dssp CCEEE-EEECCTTSCHHHHHHHHHHHS-----CEEEEECCTT
T ss_pred CCcEE-EEECCCccCHHHHHHHHHHhC-----CCcEEecccc
Confidence 33455 455899999999999998774 4567888853
No 351
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.89 E-value=0.33 Score=42.82 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=32.4
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
.|+++..+ .|.-|.||||-+..++..+..+|+||+++-.
T Consensus 17 ~~g~l~v~-~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 17 TRGQIQVI-LGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp -CCEEEEE-ECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 45565555 4888999999999999999999999999974
No 352
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.87 E-value=0.25 Score=45.40 Aligned_cols=40 Identities=28% Similarity=0.207 Sum_probs=33.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..+.++ |..|+||||+|..+|..+...+..+..+|+....
T Consensus 48 ~~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 48 GSFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred eEEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 355555 8899999999999999998877789999986543
No 353
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.83 E-value=0.2 Score=46.06 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+.+.++ |.+|+|||++|..+|..+ |.+++.+++
T Consensus 37 ~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 456665 889999999999999988 677887775
No 354
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.80 E-value=0.19 Score=43.86 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=24.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++|+++ |..|+||||++..||..+ | +-.+|.|
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 578888 889999999999988765 3 3456665
No 355
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.80 E-value=0.26 Score=43.09 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCC-cEEEE
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 104 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~-~Vlli 104 (423)
+.|+|- |-.|+||||.+..|+..|...|+ .|.+.
T Consensus 4 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 567666 78899999999999999999998 66443
No 356
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.52 E-value=0.23 Score=43.21 Aligned_cols=32 Identities=47% Similarity=0.595 Sum_probs=24.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
++|+|. |-.|+||||++..||. .|. -++|+|.
T Consensus 5 ~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 5 YIVALT-GGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 567776 8899999999988875 464 5688873
No 357
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.51 E-value=0.22 Score=43.52 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=30.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 108 (423)
..++++. |..|+||||++..|+..+.. .+.+++.++...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4677777 88999999999999987654 345688888654
No 358
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=90.45 E-value=0.5 Score=46.65 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=41.8
Q ss_pred CceEEEEeeCC-CCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc
Q 014511 68 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 115 (423)
Q Consensus 68 ~~kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~ 115 (423)
++|-|.|++|- .|.||-.+|+.|+..|..+|+||-.+-+||+-+.-+.
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~g 50 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAG 50 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSST
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCC
Confidence 36888888765 8899999999999999999999999999998764433
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.41 E-value=0.2 Score=42.81 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
.|++. |-.|+||||++..||..|.
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHHC
T ss_pred EEEEE-CCCccCHHHHHHHHHHhcC
Confidence 46666 8899999999999998873
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.39 E-value=0.16 Score=44.47 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=20.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
++.|.|. |-.|+||||++..||..|
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4566666 789999999999999877
No 361
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.38 E-value=0.41 Score=41.01 Aligned_cols=44 Identities=14% Similarity=-0.001 Sum_probs=32.9
Q ss_pred ccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 63 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 63 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.....|+++..++ |.-|+||||-....+..+..+|++|+++-..
T Consensus 14 ~~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 14 RGSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp -----CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred cCCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 3344567766555 7888999999999999999999999999743
No 362
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.35 E-value=0.18 Score=48.55 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 108 (423)
..++.|+ |..|+||||++.+||..... .+.+|++||...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4577777 88999999999999876654 457899999864
No 363
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.34 E-value=0.21 Score=44.44 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
.+.+|++. |..|+||||++..||..+
T Consensus 26 ~~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 35678887 899999999999999877
No 364
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.31 E-value=0.18 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHH
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAY 92 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~ 92 (423)
..++|+|+ |-||+||||+|..++.
T Consensus 151 ~~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHH
Confidence 35788888 8999999999998885
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.28 E-value=0.27 Score=43.77 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=24.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+++|.+. |-.|+||||++..|+..+ | ...+++|
T Consensus 29 ~~~I~l~-G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFL-GAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 3456555 889999999999998776 4 3556664
No 366
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.27 E-value=0.13 Score=44.25 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=25.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+.+ .|..|+||||++..++..+...+.++.++..
T Consensus 41 ~ll-~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 41 LLF-SGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 444 4889999999999999998766544434433
No 367
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.27 E-value=0.21 Score=47.31 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=31.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC---CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM---GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~ 108 (423)
...+.|+ |..|+||||++..++..+... +..++.+++..
T Consensus 45 ~~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 45 PNNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3456655 899999999999999998765 77888888753
No 368
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=90.24 E-value=0.07 Score=42.30 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcccCChHHHHhhhh
Q 014511 389 YAVSITWPDGFSQIAPYDQLQTMER 413 (423)
Q Consensus 389 ~~l~i~w~dgh~s~y~~~~L~~~~~ 413 (423)
..|.|.|+ |+.+.|++.|||..|.
T Consensus 15 ~~L~v~w~-G~~~~~~~~wLRd~Cp 38 (124)
T 2l6p_A 15 KTLTLRYG-EDSYDLPAEFLRVHSP 38 (124)
T ss_dssp CEEEEEET-TEEEEEEHHHHHHTCC
T ss_pred CEEEEEEC-CEEEEeCHHHHHhcCC
Confidence 47999999 9999999999999953
No 369
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.22 E-value=0.34 Score=44.53 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=27.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA----RVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~----~VlliD 105 (423)
..-+.++ |..|+|||++|..+|..+...+. .++.++
T Consensus 67 ~~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 67 TLHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 3456666 88999999999999999987654 455554
No 370
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.20 E-value=0.25 Score=56.74 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.++|.++ |-.|+||||+|.++|....++|.+|+++|++-
T Consensus 1427 g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4566666 89999999999999999999999999999874
No 371
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.15 E-value=0.19 Score=42.56 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=18.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAY 92 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~ 92 (423)
.++|++. |..|+||||++..|+.
T Consensus 2 g~ii~l~-G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIIT-GPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHhc
Confidence 3566666 8899999999999975
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.13 E-value=0.15 Score=44.76 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=24.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++.|+|. |-.|+||||++..||..| |. ..+|.|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 3566666 889999999999988765 43 456664
No 373
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=90.03 E-value=0.64 Score=45.25 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+ ..+. ......+..+|.+++|+.............+..+...+.+.+-+|+|+++..
T Consensus 102 ~~~~~~iiDtpG-h~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPG-HEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCC-SGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 456799999976 4332 2222334568999999888765445556666667777877677889997653
No 374
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.94 E-value=0.19 Score=43.67 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=23.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.|+|. |..|+||||++..||..+ |..+ +|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~d 32 (214)
T 1e4v_A 2 RIILL-GAPVAGKGTQAQFIMEKY---GIPQ--ISTG 32 (214)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence 35555 888999999999999877 5544 5553
No 375
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.88 E-value=2.1 Score=36.50 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 126 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLR 126 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhh
Confidence 34678899998643221122222445788888887643 4555554 455555543 455 45888997653
No 376
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.72 E-value=0.25 Score=46.76 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=31.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC------CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~ 108 (423)
..++.++ |..|+||||++..++..++.. |-+|+.||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4677777 889999999999999987532 35889998854
No 377
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=89.58 E-value=0.83 Score=40.82 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=39.8
Q ss_pred CceEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc
Q 014511 68 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 116 (423)
Q Consensus 68 ~~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~ 116 (423)
.||-|.|++| -.|.||=.+|+.|+..|..+|+||-++-+||+-+.-+..
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GT 71 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGT 71 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC---
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCCC
Confidence 4577777754 788999999999999999999999999999997654433
No 378
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.48 E-value=0.32 Score=42.57 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
.+|+|.+. |-+|+||||.|..||..+
T Consensus 28 k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 45787777 889999999999999876
No 379
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=89.09 E-value=1.1 Score=44.03 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=46.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+--.........+..+|.+++|+........ .....+..+...+++.+-+++|+++..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 567899999986433222233334568999999988764332 444555666677887677889998754
No 380
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.07 E-value=0.26 Score=43.14 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=23.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.|+|. |-.|+||||++..||..| |. ..++.|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIF-GPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 35555 889999999999999877 44 346663
No 381
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.97 E-value=0.38 Score=49.09 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=27.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH----CCCcEEEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIF 104 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~----~G~~Vlli 104 (423)
.+.+..|.+|+||||+...+...|.+ .|.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 45666699999999999999988874 46678774
No 382
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.81 E-value=0.31 Score=42.21 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
..+++|++. |-.|+||||++..|+..+
T Consensus 6 ~~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 345677766 889999999999887654
No 383
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.75 E-value=0.28 Score=41.34 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
.+++++. |..|+||||++..|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 3566666 899999999999988765
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.72 E-value=0.33 Score=43.00 Aligned_cols=34 Identities=41% Similarity=0.536 Sum_probs=25.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.+|++. |-.|+||||++..||..| | ...+|.|.
T Consensus 9 ~~~i~i~-G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVD-GPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 3467766 888999999999998877 3 34567664
No 385
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.72 E-value=0.31 Score=42.20 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=22.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.|.+. |-.|+||||++..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 2 NIVLM-GLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 35554 889999999999998776 44 345664
No 386
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.64 E-value=0.32 Score=48.97 Aligned_cols=39 Identities=38% Similarity=0.458 Sum_probs=31.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~ 108 (423)
..+|+++ |..|+||||++..||..|... |.++.++|.|.
T Consensus 369 G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4677777 889999999999999999755 45787888774
No 387
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.59 E-value=0.34 Score=47.33 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=30.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC--CCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D 107 (423)
.-+.++ |..|+||||++..+|..+... |.+++.+++.
T Consensus 131 ~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 455555 889999999999999999765 7888888764
No 388
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.46 E-value=0.51 Score=46.48 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=31.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.+.+..|-.|+||||++..||..|...+.++..++.|.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 344445599999999999999999988888887777553
No 389
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.42 E-value=0.5 Score=47.29 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
..++++. |..|+||||++..++..++..|.+++.+...
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3567776 8999999999999999998889899888764
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.41 E-value=0.32 Score=41.85 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=20.8
Q ss_pred ccccCCceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 63 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 63 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
++++.+...+.+.+|..|+||||+...|+..+
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44555544445556999999999999887654
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.35 E-value=0.34 Score=43.41 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=23.0
Q ss_pred ccCCceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 65 LQKISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 65 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
+...+.+|++. |-.|+||||++-.||..|
T Consensus 23 m~~~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 23 MTAIAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred cCCCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 33445788888 888999999999998665
No 392
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.30 E-value=0.51 Score=45.21 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=29.9
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
++|. |..|+||||+...|+..+...|.+|.++|-+
T Consensus 38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4444 8899999999999999998889999998754
No 393
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.28 E-value=0.32 Score=46.06 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=29.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC------CCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~ 108 (423)
.+.+.++ |.+|+||||++..++..+... +..++.+++..
T Consensus 44 ~~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 44 PSNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 3445554 999999999999999998764 56676776543
No 394
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.28 E-value=0.51 Score=44.71 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~ 108 (423)
.+.|+ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 55555 999999999999999988776 67888888654
No 395
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.18 E-value=0.3 Score=43.89 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=30.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
-+.++ |..|+|||++|..++..+.+.+.+++.+++...
T Consensus 31 ~vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CEEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CEEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 34454 899999999999999887777778888887643
No 396
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.17 E-value=4.6 Score=33.18 Aligned_cols=86 Identities=13% Similarity=0.211 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++......
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~---- 130 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV-EKMILGNKCDVNDKRQ---- 130 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC-EEEEEEEC--CCSCCC----
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECccCCccCc----
Confidence 3678899998643221222222345788888887654 4556666666655543 33 3567889976543211
Q ss_pred cCCChHHHHHHHhCC
Q 014511 252 FGRGSGSQVVQQFGI 266 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 131 v~~~~~~~~~~~~~~ 145 (183)
T 2fu5_C 131 VSKERGEKLALDYGI 145 (183)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 112345566666664
No 397
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=87.91 E-value=0.69 Score=44.84 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
...++|+|+ |=-||||++.-|+..|...|++|.++
T Consensus 47 ~~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 47 PAPFVFTVA---GTNGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp CSSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEe---CCcChHHHHHHHHHHHHHCCCCEEEE
Confidence 345899999 44689999999999999999999876
No 398
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.79 E-value=0.43 Score=45.68 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.6
Q ss_pred eCCCCCcHHHHHHHHHHHHHHC------CCcEEEEEecC
Q 014511 76 SCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 108 (423)
Q Consensus 76 s~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~ 108 (423)
.|.+|+||||++..++..+... +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 5999999999999999988763 66788888754
No 399
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=87.79 E-value=0.4 Score=42.76 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.4
Q ss_pred ccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 63 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 63 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
...+.|+|++.|+++-||.|+ .+|..|+++|.+|.++|-+..
T Consensus 16 ~~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp ------CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred ccccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 445678899999988888886 688889999999999987654
No 400
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.49 E-value=0.46 Score=40.58 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG 98 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G 98 (423)
.++++. |..|+||||+...||..+...|
T Consensus 2 ~~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 357777 8999999999999999998667
No 401
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.31 E-value=0.44 Score=41.31 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
+|.+. |.+|+||+|.|..||..+
T Consensus 2 ~Iil~-GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFL-GPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH
Confidence 56666 889999999999999876
No 402
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.22 E-value=0.34 Score=41.97 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.|.+. |-.|+||||++..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 2 NLVLM-GLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 35554 889999999999988654 44 456664
No 403
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.20 E-value=0.3 Score=41.99 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=19.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
++|++. |-.|+||||++..|+..+
T Consensus 13 ~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 456665 889999999999998876
No 404
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=87.11 E-value=0.63 Score=43.42 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=28.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 103 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 103 (423)
..++|+|+ |--||||++.-++..|...|+++.+
T Consensus 107 ~~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 107 HHWVLGVA---GTHGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp GSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 35799999 6679999999999999999988743
No 405
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=87.00 E-value=0.69 Score=44.92 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=30.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
..++|+|+ |=-||||++.-|+..|...|++|.++
T Consensus 38 ~~~vI~Vt---GTnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 38 QGRYIHVT---GTNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SSCEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCcEEEEE---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 35799999 44689999999999999999999886
No 406
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.00 E-value=2.5 Score=39.73 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHHc-C-CCCEEEEEEeccc
Q 014511 176 ELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSK-L-KVPCIAVVENMCH 241 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~---------~~~~~~~~~~d~~iiv~~p~~~---s~~~~~~~~~~l~~-~-~~~~~gvV~N~~~ 241 (423)
.+++.++|||+..... .........+|.+++|...+.. +.......+..+.. . +.+ +-+|.|+++
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcc
Confidence 4568899997643211 0011112246888888875543 45555566655543 2 455 567789865
Q ss_pred c
Q 014511 242 F 242 (423)
Q Consensus 242 ~ 242 (423)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 4
No 407
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.92 E-value=0.86 Score=40.52 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=25.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+-+.++ |..|+||||+|..+|..+ +.++..+++.
T Consensus 40 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 40 KGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp CEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 345555 889999999999998866 5566666654
No 408
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=86.73 E-value=0.64 Score=47.61 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.7
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIF 104 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~-~G~~Vlli 104 (423)
+++..|-+|+||||+.+.++..|.+ .+.+|+++
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4556688999999999999999887 67888875
No 409
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.60 E-value=0.92 Score=40.81 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=28.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEec
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDAD 107 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D 107 (423)
...+++|+ |..|+||||+...|+..+... .-+|.+.+-+
T Consensus 24 ~g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 24 KMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SSEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 34677777 888999999999999988653 3466665543
No 410
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.31 E-value=0.56 Score=39.54 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
.++++ |..|+||||+...|+..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 46666 8999999999999998884
No 411
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=86.23 E-value=1 Score=43.84 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|||+--.........+..+|.+++|+..+..-. ......+..+...+++.+-+++|+++.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56789999998633222222233446799999988865432 245556666777888866788899764
No 412
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=86.12 E-value=0.89 Score=42.73 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=38.3
Q ss_pred CcEEEEcCCCCC-------ChhhhhhhhhcCCCeEEEEeCCC----cchHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 014511 177 LDYLVIDMPPGT-------GDIQLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMC 240 (423)
Q Consensus 177 yD~iiiD~pp~~-------~~~~~~~~~~~~~d~~iiv~~p~----~~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~ 240 (423)
..++|+|+|.-. +.....+..+..++.+++|+..+ ..++..+....+.+... +.+ .-+|.|++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~ 284 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKM 284 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECc
Confidence 568999997521 00011111123468888887765 35666777677777653 344 46788997
Q ss_pred cc
Q 014511 241 HF 242 (423)
Q Consensus 241 ~~ 242 (423)
+.
T Consensus 285 Dl 286 (342)
T 1lnz_A 285 DM 286 (342)
T ss_dssp TS
T ss_pred cC
Confidence 54
No 413
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=86.09 E-value=1.6 Score=43.09 Aligned_cols=69 Identities=6% Similarity=-0.090 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 014511 175 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 244 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~---------~~~~~~~~~d~~iiv~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~ 244 (423)
+.+.+.|+|||+- .... .+...+..+|.+++|+..+... ........+.++.+.-..+-+|.|+++...
T Consensus 279 ~g~~l~liDT~G~-~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 279 DKTMFRLTDTAGL-REAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAA 357 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCT
T ss_pred CCeEEEEEECCCC-CcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCC
Confidence 4567899999763 2211 1112244678999988775432 221222223333333234667889976543
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.07 E-value=0.38 Score=44.78 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=28.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++++++ |.-|+||||+.-.|+... .|+|+.+|..|.
T Consensus 4 i~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 3455555 888999999988877653 689999998774
No 415
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.06 E-value=0.76 Score=41.94 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=27.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+-+.++ |..|+|||+++..+|..+ +.++..+++..
T Consensus 51 ~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 51 KNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 345555 889999999999999887 56788787754
No 416
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.06 E-value=0.52 Score=40.26 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
+++|++. |..|+||||++..|+..+
T Consensus 6 g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 3577777 889999999999887765
No 417
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=86.04 E-value=0.73 Score=42.75 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=29.5
Q ss_pred ceEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
..||+|-|- -||+|||-++..||..|. ++++.+|-=.
T Consensus 36 vPVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsRG 73 (315)
T 4ehx_A 36 VPVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSRG 73 (315)
T ss_dssp SCEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEECC
T ss_pred CCEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEeec
Confidence 468999876 799999999999999984 4567666433
No 418
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=85.88 E-value=1.4 Score=43.22 Aligned_cols=66 Identities=8% Similarity=-0.068 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~--------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+.+.+.|+|||+-.... ..+...+..+|.+++|+..+..........++.+.. . .+-+|.|+++..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~-piivV~NK~Dl~ 343 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--R-PLILVMNKIDLV 343 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--S-CEEEEEECTTSS
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--C-cEEEEEECCCCC
Confidence 55678899997632110 001112345788888887765333333444444443 2 356788997643
No 419
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=85.81 E-value=0.52 Score=40.22 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=20.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
+++|++. |-.|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 3577777 889999999999988764
No 420
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=85.75 E-value=1.1 Score=43.75 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=30.9
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
...++|.|+ |=-||||++.-|+..|...|+||.++
T Consensus 50 ~~~~vI~Vt---GTNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 50 PAPKIFTVA---GTNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp SSSEEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCEEEEE---CCcChHHHHHHHHHHHHHCCCcEEEE
Confidence 456899999 55689999999999999999999885
No 421
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.69 E-value=0.7 Score=40.14 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=26.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.|-.|+++ |.-|+||||++..|+. .|. -+||+|.
T Consensus 8 ~~~~iglT-GgigsGKStv~~~l~~----~g~--~vidaD~ 41 (210)
T 4i1u_A 8 HMYAIGLT-GGIGSGKTTVADLFAA----RGA--SLVDTDL 41 (210)
T ss_dssp SCCEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred ceeEEEEE-CCCCCCHHHHHHHHHH----CCC--cEEECcH
Confidence 35678888 7778999999987654 565 4589986
No 422
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.62 E-value=0.52 Score=42.22 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=26.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.++|++. |..|+||||++..||..| |. -++|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCcH
Confidence 4577777 889999999999999877 33 4677764
No 423
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=85.47 E-value=0.97 Score=44.83 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=30.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
..++|+|+ |=-||||++..|+..|...|++|.++
T Consensus 107 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 140 (498)
T 1e8c_A 107 NLRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVM 140 (498)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEE
Confidence 45899999 55689999999999999999999886
No 424
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.46 E-value=0.79 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIF 104 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~-~G~~Vlli 104 (423)
+.+..|-+|+||||+.+.++..|.+ .|.+|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 5566699999999999999999987 57888875
No 425
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.38 E-value=0.56 Score=47.50 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=29.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHH---HH-CCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTL---AG-MGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~L---a~-~G~~VlliD~D~~ 109 (423)
..++|+|+ |-||+||||+|..++... .. ....|..++++..
T Consensus 146 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45677766 999999999999988653 22 2235888887643
No 426
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.25 E-value=1 Score=42.87 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEe
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 106 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~ 106 (423)
...+++|+ |..|+||||+...|+..+... ..+|+.++-
T Consensus 135 ~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 34677777 888999999999999988764 447777763
No 427
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=85.07 E-value=0.72 Score=40.49 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=26.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++|+|. +--|+||||++..||..| |.+ ++|.|.
T Consensus 14 ~~iI~i~-g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 14 NLIITIE-REYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred CeEEEEe-CCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 3466666 888999999999999887 444 578775
No 428
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.80 E-value=1.1 Score=39.80 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=23.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+-+.++ |..|+||||++..+|..+ +..+..++
T Consensus 46 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 46 KGVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred CeEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 346666 889999999999999876 44555554
No 429
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=84.72 E-value=0.38 Score=41.73 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=24.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+|+++ |-.|+||||++..||..+ |. -++|.|.
T Consensus 5 ~i~i~-G~~gsGkst~~~~l~~~~---g~--~~~~~d~ 36 (219)
T 2h92_A 5 NIALD-GPAAAGKSTIAKRVASEL---SM--IYVDTGA 36 (219)
T ss_dssp CEEEE-CCTTSSHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhc---CC--ceecCCh
Confidence 56665 888999999999887754 43 5688774
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.71 E-value=0.77 Score=40.44 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=26.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+|+++ |..|+||||++..||..| | ...+|.|-
T Consensus 15 ~~~~i~i~-G~~gsGKst~~~~l~~~l---g--~~~~d~d~ 49 (236)
T 1q3t_A 15 KTIQIAID-GPASSGKSTVAKIIAKDF---G--FTYLDTGA 49 (236)
T ss_dssp CCCEEEEE-CSSCSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc---C--CceecCCC
Confidence 34578877 788999999999888766 4 35678774
No 431
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=84.57 E-value=1.1 Score=44.84 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=30.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
..++|+|+ |=.||||++.-|+..|...|++|.++
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~ 178 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLI 178 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 45899999 55689999999999999999999876
No 432
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.49 E-value=1 Score=41.87 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=22.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM 97 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~ 97 (423)
+..+ +.+|..|+|||+++..++..|...
T Consensus 45 ~~~l-li~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 45 NKLF-YITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCEE-EEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCeE-EEECCCCCCHHHHHHHHHHHHHHH
Confidence 3455 445999999999999999999753
No 433
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.39 E-value=0.9 Score=43.13 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=27.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..|.++ |-.|+||||+|..+|..+ |.++..+|+..
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 445565 889999999999999877 66777777654
No 434
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=84.23 E-value=0.71 Score=41.23 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=30.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|.|++.|+++-+|.|+. +|..|++.|.+|+++|.|.
T Consensus 1 MnK~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 56899999999999874 6788999999999999764
No 435
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=84.13 E-value=0.92 Score=49.03 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHH--HH-HCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYT--LA-GMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~--La-~~G~~VlliD~D~ 108 (423)
.++|+|+ |-||+||||+|..++.. .. .....++.++++.
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 4688877 88999999999999853 23 3345688888754
No 436
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.05 E-value=0.65 Score=39.97 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=22.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.+.|+|+ |..|+||||+|..|| ++|. -+|-.|
T Consensus 34 g~~ilI~-GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred CEEEEEE-CCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 4567666 889999999887654 5566 445555
No 437
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=84.02 E-value=0.96 Score=44.13 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
..++|+|+ |=-||||++.-|+..|...|++|.++
T Consensus 51 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIG---GTNGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SSEEEEEE---CSSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEE---CCcCHHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999 44689999999999999999999886
No 438
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.85 E-value=0.86 Score=45.45 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=27.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+.+.++ |..|+||||+|..+|..+ |..++-+++.
T Consensus 78 ~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 455555 889999999999998877 7788777664
No 439
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=83.80 E-value=0.76 Score=40.85 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=22.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 101 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~V 101 (423)
|++|+++ |+.|+||||+|..|+.. .|..+
T Consensus 1 m~~i~lt-G~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 1 MKLIFLS-GVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH---SCEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHh---cCCeE
Confidence 4678888 78999999999877553 46554
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.68 E-value=1.2 Score=40.03 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=24.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
..+-+.++ |..|+|||++|..+|..+ |..++.++
T Consensus 63 ~~~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLE-GPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 33455555 889999999999998874 45555554
No 441
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.62 E-value=0.59 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=25.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|.|+ |-.|+||||.|..||.. |.+|+.++...
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 4445 77899999999998854 77899998864
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.62 E-value=1.2 Score=42.84 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=25.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
++|+| +|-.|+||||++..||..+. .-+|.+|-
T Consensus 3 ~~i~i-~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 3 KVIVI-AGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEE-EECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred cEEEE-ECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 35554 57889999999999998873 34688875
No 443
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.58 E-value=0.54 Score=39.72 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
+++++. |..|+||||+.-.|+..+.
T Consensus 2 ~ii~l~-GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVIS-GPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEE-SSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 456665 8899999999999988775
No 444
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=83.55 E-value=1.3 Score=43.32 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 103 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 103 (423)
.++|+|+ |--||||++.-++..|...|++|.+
T Consensus 112 ~~~IaVT---GTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 112 SQLIGIT---GSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp SEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4899999 4567999999999999999998854
No 445
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=83.52 E-value=1.3 Score=43.83 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
..++|.|++. -||||++.-|+..|...|+||.++
T Consensus 63 ~~~vI~VtGT---NGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 63 SYPSIHIAGT---NGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp SSCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCeEEEEeCC---CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 4579999944 589999999999999999999765
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.30 E-value=0.68 Score=40.93 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=21.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
++.|+|. |--|+||||++..|+..|.
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 3567777 7789999999999998873
No 447
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.07 E-value=1.3 Score=41.80 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=27.1
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
...+.|.++ |..|+||||+|..+|..+ |..+..+++
T Consensus 115 ~~~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 115 GPPKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp SCCSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCCceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 345667776 889999999999998764 566666665
No 448
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=82.98 E-value=0.79 Score=40.07 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=29.9
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..|.|++.|+++-||.|+ .+|..|+++|++|.+++-+.
T Consensus 2 ~~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 2 EGMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp --CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 346689999988888886 57778889999999988653
No 449
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.98 E-value=1.3 Score=40.20 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=24.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
..+.+.++ |..|+||||++..+|..+ +....-+++
T Consensus 53 ~~~~vll~-Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 53 PAKGLLLF-GPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp CCSEEEEE-SSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCCeEEEE-CcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 34566666 889999999999988765 444444443
No 450
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.96 E-value=0.92 Score=39.26 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=21.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 97 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~ 97 (423)
+.+.|+ |..|+||||++..++..+...
T Consensus 46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 355555 899999999999999888643
No 451
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.96 E-value=1.3 Score=40.08 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=24.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+-+.++ |..|+||||++..+|..+ +.++..+++
T Consensus 52 ~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 52 KGILLY-GPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp SEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 456666 889999999999887764 566666655
No 452
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.91 E-value=1.2 Score=37.44 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCc
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 100 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~ 100 (423)
.+-+.|. |..|+||||+|..|.. +|++
T Consensus 16 G~gvli~-G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHHHH----TTCE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHH----cCCe
Confidence 3566666 8889999999887654 6775
No 453
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.34 E-value=0.84 Score=39.04 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=20.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
+++++. |..|+||||+.-.|+..+.
T Consensus 5 ~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 567777 8899999999999988764
No 454
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=82.34 E-value=4 Score=36.38 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=29.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.|++.|+++-||.|+ .+|..|+++|++|.++|-+..
T Consensus 8 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 43 (264)
T 2dtx_A 8 DKVVIVTGASMGIGR-----AIAERFVDEGSKVIDLSIHDP 43 (264)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 378999999999887 467889999999999987643
No 455
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.32 E-value=1.3 Score=41.14 Aligned_cols=35 Identities=20% Similarity=0.007 Sum_probs=26.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++.| .|-.|+||||++..++..+. .+++.+++..
T Consensus 31 ~~v~i-~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLV-LGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEE-ECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 44444 58899999999999987753 4688888864
No 456
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=82.25 E-value=2.7 Score=42.76 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=46.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|||+--.........+..+|.+++|+..+... .......+..+...+++.+-+|+|+++..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999864433333333355689999999887532 12445556667777877777889997643
No 457
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=82.22 E-value=3.6 Score=37.69 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 272 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLR 272 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcc
Confidence 3456799998632211222222445788888877644 4555554 344455443 455 56788997653
No 458
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.18 E-value=1.3 Score=42.93 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=29.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
-+.|. |..|+|||++...+...+.+.|.+|+++|-.
T Consensus 55 h~~i~-G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 55 HLLVN-GATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp CEEEE-ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34455 6789999999888888888899999999753
No 459
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=81.78 E-value=1.2 Score=46.97 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=28.1
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 105 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD 105 (423)
+++..|-+|+||||+.+.+...|.+ .+.+|+++-
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4556688999999999999988876 588998874
No 460
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=81.78 E-value=0.69 Score=39.81 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=24.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
++|+|. +--|+||||++..||..| |+. ++|-|.
T Consensus 7 ~iI~i~-g~~GsGk~ti~~~la~~l---g~~--~~D~~~ 39 (201)
T 3fdi_A 7 IIIAIG-REFGSGGHLVAKKLAEHY---NIP--LYSKEL 39 (201)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHT---TCC--EECHHH
T ss_pred eEEEEe-CCCCCCHHHHHHHHHHHh---CcC--EECHHH
Confidence 366666 888999999999998877 555 457543
No 461
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.77 E-value=1.5 Score=40.69 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=25.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
.+-|.++ |..|+|||++|..+|..+ .+..+..+++
T Consensus 45 ~~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 45 WRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred CceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 3567776 889999999999999876 2445555544
No 462
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=81.72 E-value=0.88 Score=39.92 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=26.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.+++|+|. |.-|+||||++..|+.. |.+|.+..-+
T Consensus 19 ~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 45788888 88899999998887765 5567766543
No 463
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.68 E-value=0.55 Score=45.47 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=23.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+..|-.|+||||++..|+..+ | ...||.|.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~---~--~~~i~~D~ 291 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDT 291 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence 444555999999999999887644 3 35566654
No 464
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.61 E-value=0.8 Score=39.60 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
-|.|+ |.+|+||||+|..||..+
T Consensus 60 ~ili~-GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFC-GPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEE-SCGGGCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 45555 999999999999999987
No 465
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.61 E-value=1.3 Score=41.74 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=26.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+.|.++ |-.|+|||++|..+|..+ |...+.+++-
T Consensus 52 ~~vll~-GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLI-GPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 456665 889999999999999877 6677777664
No 466
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=81.48 E-value=1.2 Score=36.79 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=23.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG 98 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G 98 (423)
..++++. |..|+||||+.-.|+..+...|
T Consensus 33 Ge~v~L~-G~nGaGKTTLlr~l~g~l~~~G 61 (158)
T 1htw_A 33 AIMVYLN-GDLGAGKTTLTRGMLQGIGHQG 61 (158)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHTTCCS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhCCCCC
Confidence 4678888 8889999999999999873334
No 467
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=81.23 E-value=1.7 Score=42.22 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
.++|+|+ |=-||||++..|+..|...|++|.+.
T Consensus 104 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAIT---GSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp SCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 5799999 55689999999999999999998864
No 468
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=81.22 E-value=1.1 Score=39.76 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|.|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 5689999998888886 57888999999999998654
No 469
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=81.20 E-value=6.2 Score=33.06 Aligned_cols=86 Identities=7% Similarity=0.006 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC------CCCEEEEEEecccccC-CCc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDA-DGK 247 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~~~-~~~ 247 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++... ...
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-piilv~nK~Dl~~~~~~ 150 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL-RAVLVANKTDLPPQRHQ 150 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCC-EEEEEEECC-------C
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCC-cEEEEEECcccchhhcc
Confidence 4678999998642211222222345788888887654 4556666666666542 33 3668889976533 111
Q ss_pred eeeccCCChHHHHHHHhCC
Q 014511 248 RYYPFGRGSGSQVVQQFGI 266 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 151 ----v~~~~~~~~~~~~~~ 165 (208)
T 2yc2_C 151 ----VRLDMAQDWATTNTL 165 (208)
T ss_dssp ----CCHHHHHHHHHHTTC
T ss_pred ----CCHHHHHHHHHHcCC
Confidence 112345556666653
No 470
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=81.16 E-value=1 Score=34.24 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=27.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEecC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 108 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~~VlliD~D~ 108 (423)
.+++.|+|+++ |+.|. .++..|.+.| ++|.++|-++
T Consensus 3 ~~~~~v~I~G~-G~iG~-----~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 3 AMRWNICVVGA-GKIGQ-----MIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TTCEEEEEECC-SHHHH-----HHHHHHHHCSSEEEEEEESCH
T ss_pred CCcCeEEEECC-CHHHH-----HHHHHHHhCCCceEEEEeCCH
Confidence 35678889977 88776 4566788889 9999998765
No 471
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=81.10 E-value=1.2 Score=38.42 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=30.6
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 109 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~ 109 (423)
.|||+|.|+++-||.|+ .++..|+ +.|++|.+++-++.
T Consensus 3 ~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~r~~~ 41 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYGRQLK 41 (221)
T ss_dssp CSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEESSHH
T ss_pred ceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEecCcc
Confidence 46788999988898886 5666777 79999999987643
No 472
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.99 E-value=0.86 Score=44.83 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG 96 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~ 96 (423)
-+.+ .|-.|||||+++-.||..+..
T Consensus 203 ~~LL-~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVL-IGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEE-ESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEE-ECCCCCCHHHHHHHHHHHHHh
Confidence 3444 499999999999999999875
No 473
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.97 E-value=0.7 Score=45.36 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=32.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~ 110 (423)
...++++. |..|+||||+...|+-.+... |++++.+|.|+..
T Consensus 137 ~Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~ 179 (460)
T 2npi_A 137 EGPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQ 179 (460)
T ss_dssp SCCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTS
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccC
Confidence 35688888 888999999999999887654 5365678887643
No 474
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.94 E-value=1.3 Score=40.54 Aligned_cols=33 Identities=24% Similarity=0.130 Sum_probs=24.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
.+.|.++ |..|+||||++..+|..+ +...+.++
T Consensus 49 ~~~vLL~-Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFY-GPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp CSEEEEE-CSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CceEEEE-CCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 3566666 889999999999998765 44555554
No 475
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=80.67 E-value=1.2 Score=49.28 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=30.6
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHH----CCCcEEEEEecC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADV 108 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~----~G~~VlliD~D~ 108 (423)
...++|+|+ |-||+||||+|..++..... ....|..+++..
T Consensus 145 ~~~~~v~i~-G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIY-GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEE-CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEE-eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 345788887 89999999999998876532 234677888754
No 476
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.37 E-value=0.78 Score=42.31 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=29.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
-|.++ |..|+|||++|..++....+.+...+.+++..
T Consensus 27 ~vLi~-Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 27 TVLIH-GDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp CEEEE-SCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred cEEEE-CCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 34455 89999999999999987777777888888754
No 477
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.36 E-value=0.42 Score=42.94 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=21.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
..++.|+|. |--|+||||++..||..|
T Consensus 22 ~~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345677777 889999999999988776
No 478
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=79.94 E-value=1.5 Score=40.43 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.1
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+.+.+|..|+||||++..+|..+ |.+++-+++
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~ 81 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV---NADMMFVNG 81 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT---TEEEEEEET
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 45566889999999999998776 567776664
No 479
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=79.89 E-value=3.9 Score=38.06 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=24.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
.++++|. |..|+||||+...|+..+.... ..+.++
T Consensus 171 g~~v~i~-G~~GsGKTTll~~l~g~~~~~~-g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVC-GGTGSGKTTYIKSIMEFIPKEE-RIISIE 205 (330)
T ss_dssp TCCEEEE-ESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence 3577777 7789999999888887765433 344454
No 480
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=79.74 E-value=1.6 Score=40.30 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=25.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 101 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~V 101 (423)
...+++|+ |..|+||||+...|+..+ .| +|
T Consensus 125 ~Ge~vaIv-GpsGsGKSTLl~lL~gl~--~G-~I 154 (305)
T 2v9p_A 125 KKNCLAFI-GPPNTGKSMLCNSLIHFL--GG-SV 154 (305)
T ss_dssp TCSEEEEE-CSSSSSHHHHHHHHHHHH--TC-EE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHhhhc--Cc-eE
Confidence 34688888 888999999999999988 56 44
No 481
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.60 E-value=2.3 Score=39.25 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
.+-|.++ |..|+|||++|..+|..+ +..+..+++
T Consensus 51 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 3456666 889999999999998875 455555544
No 482
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.28 E-value=1.2 Score=38.14 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=21.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
..++++. |..|+||||+.-.|+..+.
T Consensus 20 Gei~~l~-GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLS-GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 4688888 8899999999999988763
No 483
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.26 E-value=2.2 Score=41.23 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=29.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
...+|+|+ |..|+||||+...|+..+...+.+|..++-+
T Consensus 166 ~ggii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 166 PHGIILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSEEEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred cCCeEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 34566666 8999999999999988886555577776633
No 484
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=78.98 E-value=2 Score=42.93 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=28.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
..++|+|+ |=-||||++.-++..|...|+++.++
T Consensus 121 ~~~vIaVT---GTnGKTTTt~li~~iL~~~G~~~~~~ 154 (524)
T 3hn7_A 121 SRHVIAVA---GTHGKTTTTTMLAWILHYAGIDAGFL 154 (524)
T ss_dssp GSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCcEEEEE---CCCCHHHHHHHHHHHHHHcCCCceEE
Confidence 35799999 55699999999999999999987543
No 485
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=78.97 E-value=1.2 Score=37.05 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=16.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVN 89 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~n 89 (423)
+.++++. |..|+||||++..
T Consensus 9 gei~~l~-G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLI-GSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEE-CCTTSCHHHHHHH
T ss_pred CEEEEEE-CCCCCCHHHHHHH
Confidence 3577777 8999999999986
No 486
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=78.95 E-value=2.4 Score=38.05 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=31.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.++.|. +-+|.||||++.+++..-+++|.+++++-++-.
T Consensus 22 s~~li~-g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~ 60 (260)
T 3bs4_A 22 LILIHE-EDASSRGKDILFYILSRKLKSDNLVGMFSISYP 60 (260)
T ss_dssp EEEEEE-CSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred cEEEEE-eCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 455554 566667779999999999999999999999853
No 487
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.81 E-value=1.4 Score=41.17 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
..+.++ |..|+||||++..+|..+
T Consensus 52 ~~~ll~-Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLA-GPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEE-SSTTSSHHHHHHHHHHHH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh
Confidence 456665 999999999999999887
No 488
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.78 E-value=1.4 Score=40.70 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=25.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++.|+ |..|+||||++..++..+ | ++.+|+..
T Consensus 32 ~~v~i~-G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLL-GIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred CeEEEE-CCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 455554 999999999999987654 3 88888864
No 489
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=78.59 E-value=1.7 Score=41.64 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=25.2
Q ss_pred cEEEEEeCCCCceEeechhhhhcCCCCCC
Q 014511 330 KAIKVKVPQSDEEFFLHPATVRRNDRSAQ 358 (423)
Q Consensus 330 ~~l~v~~~d~~~~~~~~~~~LR~~c~c~~ 358 (423)
..|.|.|+||.. +.|++.|||.+|.++.
T Consensus 73 ~~l~i~w~dgH~-s~y~~~~L~~~~~~~~ 100 (388)
T 3o2g_A 73 KKVYITWPDEHY-SEFQADWLKKRCFSKQ 100 (388)
T ss_dssp SEEEEECTTSCE-EEEEHHHHHHTCCSHH
T ss_pred CEEEEEecCCCc-eEeCHHHHHhhcCCch
Confidence 789999999997 8999999999987753
No 490
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=78.53 E-value=2 Score=42.26 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=27.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 103 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 103 (423)
.++|+|+ |=-||||++.-|+..|...|++|.+
T Consensus 114 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~~~~ 145 (469)
T 1j6u_A 114 KEEFAVT---GTDGKTTTTAMVAHVLKHLRKSPTV 145 (469)
T ss_dssp CCEEEEE---CSSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 4799999 4568999999999999999998744
No 491
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=78.41 E-value=1.3 Score=38.71 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=27.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
||++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999988888886 56778899999999998654
No 492
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.32 E-value=1.6 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=0.0
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHH-------CCCcEEEEEe
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 106 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~-------~G~~VlliD~ 106 (423)
+..|..|+||||++..+|..+.. .|.+++.+|+
T Consensus 195 lL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
No 493
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=78.25 E-value=1.5 Score=38.41 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=29.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|.|++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 1 ~~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 1 MERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578999998888887 57788999999999998664
No 494
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=78.20 E-value=1.2 Score=38.70 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
.+++++. |..|+||||+.-.|+..+
T Consensus 23 G~~~~lv-GpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVIC-GPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 4678887 889999999999998876
No 495
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=78.08 E-value=8.8 Score=32.55 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... .-..+-+|.|+++......
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~---- 158 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE---- 158 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccc----
Confidence 5678999998632211222222446788888887654 4445555444444332 1224667889976533111
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
......+++.+.++.+
T Consensus 159 v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 159 VNERQARELADKYGIP 174 (217)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHCCCc
Confidence 1123455666666644
No 496
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=77.78 E-value=1.7 Score=38.97 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=30.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4589999999999887 57888999999999998653
No 497
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=77.61 E-value=0.92 Score=41.73 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMG 98 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G 98 (423)
+.+ .|..|+||||++..+|..+...+
T Consensus 49 ~ll-~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 49 LLF-AGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp EEE-ESCTTSSHHHHHHHHHHHHHGGG
T ss_pred EEE-ECcCCCCHHHHHHHHHHHhcCCc
Confidence 544 58899999999999999986543
No 498
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=77.52 E-value=1.8 Score=38.32 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
||++.|+++-||.|+. +|..|+++|++|.++|-+.
T Consensus 1 mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCc
Confidence 4789999888888874 6778889999999998654
No 499
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=77.52 E-value=2.8 Score=41.13 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=30.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCc-EEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~-VlliD~D~ 108 (423)
.++|+|+ |=-||||++.-|+..|...|++ ++.+....
T Consensus 118 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~p~~~igg~~ 155 (475)
T 1p3d_A 118 RHGIAVA---GTHGKTTTTAMISMIYTQAKLDPTFVNGGLV 155 (475)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 4799999 4568999999999999999987 66565544
No 500
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.23 E-value=1.1 Score=41.80 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=26.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.|+ |..|+||||++..+|..+...+.++.++..+.
T Consensus 49 ~ll~-Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFY-GPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp EEEE-CSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 5555 88999999999999999876544444555443
Done!