BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014512
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana
GN=ACLA-1 PE=1 SV=1
Length = 423
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/423 (85%), Positives = 395/423 (93%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
MARKKIREYDSKRL+KEHF+RLSG+ELPI+S Q+ E+T+ +EL +KEPWL+S KLVVKPD
Sbjct: 1 MARKKIREYDSKRLVKEHFKRLSGKELPIRSVQINETTDLNELVEKEPWLSSEKLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
MLFGKRGKSGLVAL LD A ATFVKE LGKE+EMS CKGPITTFI+EPF+PHNEE+YLN
Sbjct: 61 MLFGKRGKSGLVALKLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVPHNEEYYLN 120
Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
+VS+RLGCS+SFSECGGIEIEENWDKVKTIF+PTGA L E APLVATLPLEI+ EI+E
Sbjct: 121 VVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTGASLTPEICAPLVATLPLEIKAEIEE 180
Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
FIK +FTLFQDLDFTFLEMNPFTLVD PYPLDMRGELDDTAAFKNFKKWG+IEFPLPFG
Sbjct: 181 FIKVIFTLFQDLDFTFLEMNPFTLVDGSPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFG 240
Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R MS TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
YAEYSGAP E EVLQYARVVIDCATA+PDG+ RALVIGGGIANFTDVAATFNGII+ALKE
Sbjct: 301 YAEYSGAPKEDEVLQYARVVIDCATANPDGKSRALVIGGGIANFTDVAATFNGIIRALKE 360
Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
KE+KLKAARMH++VRRGGPNYQ+GLAKMRAL ++IG+PIEVYGPEATMTGICK+AI+ I+
Sbjct: 361 KEAKLKAARMHIFVRRGGPNYQKGLAKMRALGDDIGVPIEVYGPEATMTGICKEAIQYIT 420
Query: 421 AAA 423
AAA
Sbjct: 421 AAA 423
>sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana
GN=ACLA-2 PE=2 SV=1
Length = 423
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/423 (84%), Positives = 397/423 (93%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
MARKKIREYDSKRL+KEHF+RLSG+ELPI+S Q+ + T+ +EL ++EPWL+S KLVVKPD
Sbjct: 1 MARKKIREYDSKRLVKEHFKRLSGQELPIRSVQINQETDLNELVEREPWLSSEKLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
MLFGKRGKSGLVALNLD A ATFVKE LGKE+EMS CKGPITTFI+EPF+PHNEEFYLN
Sbjct: 61 MLFGKRGKSGLVALNLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVPHNEEFYLN 120
Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
IVS+RLGCS+SFSECGGI+IEENWDKVKTI +PTGA L E APLVATLPLEI+GE+++
Sbjct: 121 IVSDRLGCSISFSECGGIDIEENWDKVKTITIPTGASLTFEICAPLVATLPLEIKGELED 180
Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
FI+ +FTLF+DLDFTFLEMNPFTLVD KPYPLDMRGELDDTAAFKNFKKWG+IEFP+PFG
Sbjct: 181 FIQVIFTLFEDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGDIEFPMPFG 240
Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R MS+TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSSTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
YAEYSGAP E EVLQYARVVIDCATA+PDG+ RALVIGGGIANFTDVAATFNGII+ALKE
Sbjct: 301 YAEYSGAPKEDEVLQYARVVIDCATANPDGKSRALVIGGGIANFTDVAATFNGIIRALKE 360
Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
KE+KLKAARMH++VRRGGPNYQ+GLAKMR+L +EIG+PIEVYGPEATMTGICK+AI+ I+
Sbjct: 361 KEAKLKAARMHIFVRRGGPNYQKGLAKMRSLGDEIGVPIEVYGPEATMTGICKEAIQYIT 420
Query: 421 AAA 423
AAA
Sbjct: 421 AAA 423
>sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp.
japonica GN=ACLA-2 PE=2 SV=2
Length = 423
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/423 (81%), Positives = 384/423 (90%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
MARKKIREYDSKRLLKEH +RL+G +L I SAQV +ST+F EL ++PWL++ KLVVKPD
Sbjct: 1 MARKKIREYDSKRLLKEHLKRLAGIDLQILSAQVTQSTDFTELVNQQPWLSTMKLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
MLFGKRGKSGLVALNLD+AQ FVKE LG E+EM CK PITTFI+EPF+PH++E+YL+
Sbjct: 61 MLFGKRGKSGLVALNLDIAQVKEFVKERLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLS 120
Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
IVSERLG ++SFSECGGIEIEENWDKVKTIF+PT + + APL+ATLPLE RG+I +
Sbjct: 121 IVSERLGSTISFSECGGIEIEENWDKVKTIFLPTEKPMTPDACAPLIATLPLEARGKIGD 180
Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
FIK VF +FQDLDF+FLEMNPFT+V+ +PYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG
Sbjct: 181 FIKGVFAVFQDLDFSFLEMNPFTIVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R +S+TE FIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
YAEYSGAPNE EVLQYARVV+DCATADPDGRKRAL+IGGGIANFTDV ATF+GII+AL+E
Sbjct: 301 YAEYSGAPNEEEVLQYARVVLDCATADPDGRKRALLIGGGIANFTDVGATFSGIIRALRE 360
Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
KESKLKAARMH+YVRRGGPNYQ GLAKMR L E+G+PIEVYGPEATMTGICKQAIEC+
Sbjct: 361 KESKLKAARMHIYVRRGGPNYQTGLAKMRKLGAELGVPIEVYGPEATMTGICKQAIECVM 420
Query: 421 AAA 423
AAA
Sbjct: 421 AAA 423
>sp|Q2QNG7|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp.
japonica GN=ACLA-3 PE=2 SV=1
Length = 423
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/423 (79%), Positives = 384/423 (90%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
MARKKIREYDSKRLL+EH +RL+ +L I SAQV EST+F EL +EPWL+S KLVVKPD
Sbjct: 1 MARKKIREYDSKRLLREHLKRLAAIDLHILSAQVTESTDFTELVNQEPWLSSMKLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
MLFGKRGKSGLVALNLDLAQ FVKE LG E+EM CK PITTFI+EPF+PH++E+YL+
Sbjct: 61 MLFGKRGKSGLVALNLDLAQVRQFVKERLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLS 120
Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
IVSERLG ++SFSECGGIEIEENWDKVKT+F+PT + + APL+ATLPLE+R +I +
Sbjct: 121 IVSERLGSTISFSECGGIEIEENWDKVKTVFLPTEKAMTPDACAPLIATLPLEVRTKIGD 180
Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
FI+ V+++FQDLDF+FLEMNPFT+V+ +PYPLDMRGELDDTAAFKNFKKWGNI+FPLPFG
Sbjct: 181 FIRGVYSVFQDLDFSFLEMNPFTMVNGEPYPLDMRGELDDTAAFKNFKKWGNIQFPLPFG 240
Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R +S +ESFIH+LDEKTS+SLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVLSPSESFIHELDEKTSSSLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
YAEYSGAPNE EVLQYARVV+DCATADPDGRKRAL+IGGGIANFTDVAATF+GII+AL+E
Sbjct: 301 YAEYSGAPNEEEVLQYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALRE 360
Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
KESKLKAARM++YVRRGGPNYQ GLAKMR L E+G+PIEVYGPEATMTGICKQAI+CI
Sbjct: 361 KESKLKAARMNIYVRRGGPNYQTGLAKMRTLGAELGVPIEVYGPEATMTGICKQAIDCIM 420
Query: 421 AAA 423
A A
Sbjct: 421 AEA 423
>sp|O80526|ACLA3_ARATH ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana
GN=ACLA-3 PE=2 SV=1
Length = 424
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/419 (79%), Positives = 377/419 (89%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
MARKKIREYDSKRLLKEH +RL+ +L I+SAQV EST+F EL +E WL+S KLVVKPD
Sbjct: 1 MARKKIREYDSKRLLKEHLKRLANIDLQIRSAQVTESTDFTELTNQESWLSSTKLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
MLFGKRGKSGLVAL LDLA+ A FVK LG E+EM CK PITTFI+EPF+PH++E+YL+
Sbjct: 61 MLFGKRGKSGLVALKLDLAEVADFVKARLGTEVEMEGCKAPITTFIVEPFVPHDQEYYLS 120
Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
IVS+RLGC++SFSECGGIEIEENWDKVKTIF+P + E APL+ATLPLE+R +I
Sbjct: 121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPAEKSMTLEVCAPLIATLPLEVRAKIGN 180
Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
FI F +FQDLDF+F+EMNPFTLVD +P+PLDMRGELDDTAAFKNF KWG+IEFPLPFG
Sbjct: 181 FIMGAFAVFQDLDFSFMEMNPFTLVDGEPFPLDMRGELDDTAAFKNFNKWGDIEFPLPFG 240
Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R +S+TE+FIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVLSSTENFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
YAEYSGAPNE EVLQYARVVIDCAT DPDGRKRAL+IGGGIANFTDVAATFNGII+AL+E
Sbjct: 301 YAEYSGAPNEEEVLQYARVVIDCATTDPDGRKRALLIGGGIANFTDVAATFNGIIRALRE 360
Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419
KE++LKA+RMH+YVRRGGPNYQ GLA+MRAL EE+G+P+EVYGPEATMTGICK+AI+CI
Sbjct: 361 KETRLKASRMHIYVRRGGPNYQTGLARMRALGEELGVPLEVYGPEATMTGICKRAIDCI 419
>sp|Q53JY8|ACLA1_ORYSJ ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa
subsp. japonica GN=ACLA-1 PE=3 SV=2
Length = 407
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/424 (75%), Positives = 363/424 (85%), Gaps = 18/424 (4%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
MARKKIREYDSKRLLKEH +RL+G +L I SAQV +ST+F EL ++PWL++ KLVVKPD
Sbjct: 1 MARKKIREYDSKRLLKEHLKRLAGIDLQILSAQVTQSTDFTELVNQQPWLSTMKLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
MLFGKRGKSGLVALNLD+AQ FVKE LG E+EM CK PITTFI+EPF+PH++E+YL+
Sbjct: 61 MLFGKRGKSGLVALNLDIAQVKEFVKERLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLS 120
Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
IVSERLG ++SFSECGGIEIEENWDKVKTIF+ T + + APL+ATLPLE RG+I +
Sbjct: 121 IVSERLGSTISFSECGGIEIEENWDKVKTIFLSTEKPMTPDACAPLIATLPLEARGKIGD 180
Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFK-KWGNIEFPLPF 239
FIK VF +FQDLDF+FLEMNPFT+V+ +PYPLDMRGELDDTAAFK + KWGNIEFPLPF
Sbjct: 181 FIKGVFAVFQDLDFSFLEMNPFTIVNGEPYPLDMRGELDDTAAFKTSRSKWGNIEFPLPF 240
Query: 240 GRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELG 299
GR +S+TE FIHDLDEKTSASLKFTVLNPKGRIWTMVAGG EL
Sbjct: 241 GRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGG-----------------ELE 283
Query: 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359
NYAEYSGAPNE EVLQYARVV+DCATADPDGRKRAL+IGGGIANFTDV ATF+GII+AL+
Sbjct: 284 NYAEYSGAPNEEEVLQYARVVLDCATADPDGRKRALLIGGGIANFTDVGATFSGIIRALR 343
Query: 360 EKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419
EKESKLKAARMH+YVRRGGPNYQ GLAKMR L E+G+PIEVYGPEATMTGICKQAIEC+
Sbjct: 344 EKESKLKAARMHIYVRRGGPNYQTGLAKMRKLGAELGVPIEVYGPEATMTGICKQAIECV 403
Query: 420 SAAA 423
AAA
Sbjct: 404 MAAA 407
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1
Length = 1091
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 182/419 (43%), Positives = 255/419 (60%), Gaps = 3/419 (0%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL ++ S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWAHLLQDHPWLLSQSLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHN--EEFY 118
L +RGK GLV +NL L +++K LG E + + KG + F+IEPF+PH+ EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLSLDGVKSWLKPRLGHEATVGKAKGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L +E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNTEDIKRHLLVHAPEDKKEV 180
Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI +F ++DL FT+LE+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQA 357
L NY EYSGAP+E + YA+ ++ T + + L+IGG IANFT+VAATF GI++A
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFTNVAATFKGIVRA 360
Query: 358 LKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 416
+++ + LK + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A+
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1
Length = 1100
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/420 (44%), Positives = 257/420 (61%), Gaps = 7/420 (1%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL ++ S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWAHLLQDHPWLLSQSLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHN--EEFY 118
L +RGK GLV +NL L +++K LG E + + KG + F+IEPF+PH+ EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLSLDGVKSWLKPRLGHEATVGKAKGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACL-ASETSAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L A + L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDTKAQKLLVGVDEKLNAEDIKRHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI +F ++DL FT+LE+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGII 355
L NY EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 356 QALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415
+A+++ + LK + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A
Sbjct: 359 RAIRDYQGSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1
Length = 1101
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 256/421 (60%), Gaps = 7/421 (1%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL ++ S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQSLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHN--EEFY 118
L +RGK GLV +NL L +++K LG+E + + G + F+IEPF+PH EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHTQEEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVAVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI +F ++DL FT+LE+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGII 355
L NY EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 356 QALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415
+A+++ + LK + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 416 I 416
+
Sbjct: 419 L 419
>sp|Q32PF2|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1
Length = 1091
Score = 342 bits (878), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 256/421 (60%), Gaps = 7/421 (1%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL ++ S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQSLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHN--EEFY 118
L +RGK GL+ +NL L +++K LG+E + + G + F+IEPF+PH EEFY
Sbjct: 61 QLIKRRGKLGLIGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHTQEEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI +F ++DL FT+LE+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGII 355
L NY EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 356 QALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415
+A+++ + LK + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 416 I 416
+
Sbjct: 419 L 419
>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3
Length = 1101
Score = 342 bits (877), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 256/421 (60%), Gaps = 7/421 (1%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL + S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHN--EEFY 118
L +RGK GLV +NL L +++K LG+E + + G + F+IEPF+PH+ EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI +F ++DL FT+LE+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGII 355
L NY EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 356 QALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415
+A+++ + LK + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 416 I 416
+
Sbjct: 419 L 419
>sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1
PE=2 SV=1
Length = 1106
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 182/435 (41%), Positives = 260/435 (59%), Gaps = 23/435 (5%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLT-SCKLVVKP 59
M+ K + E K +L ++F+ SG + V NFDE+A K WL K V+KP
Sbjct: 1 MSAKAVSELSGKEVLYKYFEP-SGLLSAPHAFHVKAGENFDEIANKYEWLARDNKGVIKP 59
Query: 60 DMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNE--EF 117
D L +RGK GLV + A F K + + + +G + TFI+EPF H E E
Sbjct: 60 DQLIKRRGKLGLVKIGTPQELKAWFEKTG-DSYVRVGQTEGRLHTFIVEPFCAHTEKDEM 118
Query: 118 YLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASET-SAPLVATL--PLEI 174
Y+ I SER + F E GG++I + +K +T+ VP + T S + TL PL+
Sbjct: 119 YIAIYSERFRDVIMFYEQGGVDIGDVEEKARTVSVPVQLNENAMTPSDEELTTLLGPLKD 178
Query: 175 RGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKW---- 230
++ F+ ++ ++DL FT+LE+NPF L++ + + LD+ LD+TA F KW
Sbjct: 179 SDIVRRFVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAARLDETANFLCADKWKSRL 238
Query: 231 ------GNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 284
++EFP PFGR +++ E +I ++D KT ASLK T+LN KGR+WTMVAGGGASV+
Sbjct: 239 TPYGGPNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVV 298
Query: 285 YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDC---ATADPDGRKRALVIGGGI 341
+ DTV DLG ASEL NY EYSG P+E + +YA+ ++ T PDG + L+IGG I
Sbjct: 299 FTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTEGTPRPDG--KVLIIGGSI 356
Query: 342 ANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEV 401
ANFT+VA TF GI++A + SKLK ++ ++VRRGGPNYQ GL +++ A ++ LPI V
Sbjct: 357 ANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLELPIHV 416
Query: 402 YGPEATMTGICKQAI 416
+GPE MT I A+
Sbjct: 417 FGPETHMTAIVGAAL 431
>sp|O13907|ACL2_SCHPO Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC22A12.16 PE=1
SV=1
Length = 492
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 266/484 (54%), Gaps = 72/484 (14%)
Query: 1 MARKKIREYDSKRLL-----------KEHFQRLSGR--------ELPIKSAQV-IESTNF 40
M+ K IREYD K +L KE ++ +S + P+ + + EST +
Sbjct: 1 MSAKSIREYDGKAVLAYWLNRSPSISKEEYKTVSATPAVQLAQIQFPLPTLVIPAESTTY 60
Query: 41 DELA--------QKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKE 92
E+ Q+ PW+ KLV KPD L +RGKSGL+ LN +A +++E GK
Sbjct: 61 REVVEDVFAKVEQEHPWVKETKLVAKPDQLIKRRGKSGLLKLNATWDEAKEWIRERAGKN 120
Query: 93 MEMSECKGPITTFIIEPFIPH--NEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTI 150
++ G +TTF++EPF+PH N E+Y+NI S R G + F GG+++ + K + +
Sbjct: 121 QKVQHAVGYLTTFLVEPFVPHPPNTEYYININSVREGDWILFCNEGGVDVGDVDAKARKL 180
Query: 151 FV-------PTGACLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFT 203
V P+ A +AS L++ +P+E + +FI +++++ D FT+LE+NP
Sbjct: 181 LVPVRLSEFPSRATIAST----LLSDIPVEQHESLVDFIIRLYSVYVDCQFTYLEINPLV 236
Query: 204 LVDRKP----YPLDMRGELDDTAAFKNFKKW------------------GNIE------- 234
++ + LD+ +LD TA F+ KW G I
Sbjct: 237 VIPTAKGADVFYLDLAAKLDQTAEFECGAKWAVARAPESLGIKTSGEESGAINADHGPPM 296
Query: 235 -FPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLG 293
FP PFGR +S E+++ LD KT ASLK T+LN +GR+W +VAGGGASV+YAD V G
Sbjct: 297 VFPAPFGRELSKEEAYVQGLDAKTGASLKLTILNAEGRVWNLVAGGGASVVYADAVAVNG 356
Query: 294 YASELGNYAEYSGAPNEGEVLQYARVVIDCAT-ADPDGRKRALVIGGGIANFTDVAATFN 352
A EL NY EYSGAP +G+ +YA+ V+D T +P + L IGGGIANFT A TF
Sbjct: 357 AADELANYGEYSGAPTDGQTYEYAKTVLDLMTRGEPRADGKVLFIGGGIANFTSPAVTFR 416
Query: 353 GIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGIC 412
I +AL + + KL A ++ ++VRR GPNYQ GL +R ++ LP++VYGPE ++GI
Sbjct: 417 AIARALGDYKDKLHAHKVSIWVRRAGPNYQEGLRVIREAGKKFDLPLKVYGPECHISGIV 476
Query: 413 KQAI 416
+
Sbjct: 477 PMGL 480
>sp|Q8CPH5|SUCC_STAES Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sucC PE=3 SV=1
Length = 388
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 175/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ E LGK++ ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYANELLGKQL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P + IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEVKRLYIEEGCDIQKEYYVGFVIDRATDKVTLMASEEGGTEIEE-------VAAQT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P+V P + R G+ +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVVGLSPYQARRIAFNINIPKESVGKATKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D + LD + DD A F K+ + ++E P E +
Sbjct: 201 LVTTGDGQVLALDAKLNFDDNALFRHKDILELRDLEEEDP---------------KEIEA 245
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
+ + + G I MV G G ++ DT+ G N+ + G + +V + +
Sbjct: 246 SKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFG--GNPANFLDVGGGATKEKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI+ A+KE E L L VR G
Sbjct: 304 IIL----GDDNVKGIFVNIFGGIMK-CDVIA--EGIVAAVKEVELTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N +RG +A+ E GL IE P ATM ++ ++ + A
Sbjct: 352 TNVERG----KAILNESGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q5HPU5|SUCC_STAEQ Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sucC PE=3
SV=1
Length = 388
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 175/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ E LGK++ ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYANELLGKQL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P + IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEVKRLYIEEGCDIQKEYYVGFVIDRATDKVTLMASEEGGTEIEE-------VAAQT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P+V P + R G+ +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVVGLSPYQARRIAFNINIPKESVGKATKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D + LD + DD A F K+ + ++E P E +
Sbjct: 201 LVTTGDGQVLALDAKLNFDDNALFRHKDILELRDLEEEDP---------------KEIEA 245
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
+ + + G I MV G G ++ DT+ G N+ + G + +V + +
Sbjct: 246 SKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFG--GNPANFLDVGGGATKEKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI+ A+KE E L L VR G
Sbjct: 304 IIL----GDDNVKGIFVNIFGGIMK-CDVIA--EGIVAAVKEVELTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N +RG +A+ E GL IE P ATM ++ ++ + A
Sbjct: 352 TNVERG----KAILNESGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q49X32|SUCC_STAS1 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=sucC PE=3 SV=1
Length = 388
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 177/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELDSKVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCDIQKEYYVGFVIDRATDRVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P+V P + R + +F+ S++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVVGLAPYQARRIAFNINIPKESINKAAKFLVSLYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T + + LD + DD A F K+ ++ ++E P E+ +DL
Sbjct: 201 LVTTGEGEVLALDAKVNFDDNALFKHKDIQELRDLEEEDP-----KEIEASKYDLS---- 251
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
+ L+ G I MV G G ++ DT+ G N+ + G + +V + +
Sbjct: 252 ----YIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDVGGGATKEKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI +A GI+ A+KE E L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMKCDIIA---EGIVAAVKEVELTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N +RG + + +E GL IE P ATM ++ ++ + A
Sbjct: 352 TNVERG----KEILKESGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q6GHJ0|SUCC_STAAR Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain MRSA252) GN=sucC PE=3 SV=1
Length = 388
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKITKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|B4U901|SUCC_HYDS0 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hydrogenobaculum
sp. (strain Y04AAS1) GN=sucC PE=3 SV=1
Length = 382
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 174/413 (42%), Gaps = 66/413 (15%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
K+ E+ SK LLK++ LP+ + N E + L LVVK + G
Sbjct: 2 KLHEHQSKELLKKY-------GLPVPEGYA--AFNVKEAKEAAQALGGYPLVVKAQIHCG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG--PITTFIIEPFIPHNEEFYLNIV 122
RGK+G V + + F + LGK ++ +C ++ +IE P +EFYL+I
Sbjct: 53 ARGKAGGVKIVKSDEELEAFSEAILGKILKTVQCPNGKVVSRLLIEKATPIEKEFYLSIT 112
Query: 123 SERLGCSVSF--SECGGIEIEE-NWDKVKTIFVPTGACLASETSAPLVATLPLEIR---- 175
+R + S+ GG+EIEE + +K I E P++ +P + R
Sbjct: 113 LDRSNSKILIMASKEGGMEIEELSKEKPDAII--------KEYVDPVLGIMPYQTRKLSF 164
Query: 176 ------GEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFKNFK 228
+ + ++ + DLD + LE+NP L D LD + E+DD AAF++
Sbjct: 165 ALGLNPSLFGKIVSKLYQAYMDLDASLLEINPLVLTKDGDIVLLDAKVEIDDNAAFRH-- 222
Query: 229 KWGNIEFPLPFGRAMSATESFIH-DLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYAD 287
+ + E D E + + +G I MV G G ++ D
Sbjct: 223 ------------KDIEELEDITQIDPLEVEAKKYGLNYIKLEGNIGCMVNGAGLAMTTMD 270
Query: 288 TVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDV 347
+ G A N+ + G + ++ R++ T+D + + + I GGI +
Sbjct: 271 IIKLAGGAP--ANFLDVGGGASVEQIANAFRIL----TSDENVKAVFINIFGGILRCDRL 324
Query: 348 AATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIE 400
A NG+I+A +K+ ++ + VR G N + G R L +E GL E
Sbjct: 325 A---NGLIEA-----AKIVNIKIPVVVRLEGTNVEEG----RKLLKESGLNFE 365
>sp|P66872|SUCC_STAAW Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain MW2) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|A8Z3S5|SUCC_STAAT Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain USA300 / TCH1516) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q6G9W8|SUCC_STAAS Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain MSSA476) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|P99071|SUCC_STAAN Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain N315) GN=sucC PE=1 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|P66871|SUCC_STAAM Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=sucC PE=1 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|A6QGE5|SUCC_STAAE Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain Newman) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q5HGI7|SUCC_STAAC Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain COL) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|A5ISD0|SUCC_STAA9 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain JH9) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q2FZ37|SUCC_STAA8 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain NCTC 8325) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q2FHJ3|SUCC_STAA3 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain USA300) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|A6U164|SUCC_STAA2 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain JH1) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|A7X1L8|SUCC_STAA1 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain Mu3 / ATCC 700698) GN=sucC PE=3 SV=1
Length = 388
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|O67546|SUCC_AQUAE Succinyl-CoA ligase [ADP-forming] subunit beta OS=Aquifex aeolicus
(strain VF5) GN=sucC PE=3 SV=1
Length = 385
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 151/346 (43%), Gaps = 51/346 (14%)
Query: 55 LVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG--PITTFIIEPFIP 112
LVVK + G RGK+G V + D+ + V+ LGK ++ +C P+ +IE
Sbjct: 43 LVVKAQIHCGGRGKAGGVKIVKDMDELEKAVESLLGKVLKTFQCPDGKPVNRVLIEKATN 102
Query: 113 HNEEFYLNIVSERLGCS--VSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATL 170
++E+YL I +R + S GG+EIEE I + ET P + +
Sbjct: 103 IDKEYYLAITLDRSKSKPVIMASAAGGMEIEE-------IVKENPEAIIIETIDPELGLM 155
Query: 171 PLEIRG-------EIQEFIKSVFTLFQ---DLDFTFLEMNPFTLV-DRKPYPLDMRGELD 219
P + R ++EF L+Q DLD + +E+NP L + LD + ++D
Sbjct: 156 PYQARELAFKLNLPVKEFASIALKLYQIYSDLDASLVEINPLVLTKEGNLIALDAKLDID 215
Query: 220 DTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLD-EKTSASLKFTVLNPKGRIWTMVAG 278
D A F++ K +E E+ + L+ E L + LN G I MV G
Sbjct: 216 DNALFRH-KDLEEME-----------DETQLPQLEVEAKKYGLNYIKLN--GNIGCMVNG 261
Query: 279 GGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG 338
G ++ D + G E N+ + G N ++ R+++ ADPD + + I
Sbjct: 262 AGLAMATMDIIKLAG--GEPANFLDVGGGANVEQIANAFRILM----ADPDVKAVFINIF 315
Query: 339 GGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384
GGI +A G+I+A SK+ R+ + R G N + G
Sbjct: 316 GGILRVDRLA---QGLIEA-----SKMVELRVPIVARLEGTNVEEG 353
>sp|Q2YXM1|SUCC_STAAB Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
aureus (strain bovine RF122 / ET3-1) GN=sucC PE=3 SV=1
Length = 388
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 175/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K S VVK + G RGK+G V + L++ T+ KE LGK + ++ G
Sbjct: 29 EEAVEKAKEFNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYAKELLGKTL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P I IE +E+Y+ V +R V+ SE GG EIEE + T
Sbjct: 88 PEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P++ P + R + +F+ +++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T D LD + DD A F K+ + ++E P E+ HD
Sbjct: 201 LVTTADGDVLVLDAKINFDDNALFRHKDVVELRDLEEEDP-----KEIEASKHD------ 249
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
L + L+ G I MV G G ++ DT+ G N+ + G+ +V + +
Sbjct: 250 --LSYIALD--GDIGCMVNGAGLAMATMDTINHFG--GNPANFLDAGGSATREKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI++A+KE + L L VR G
Sbjct: 304 IIL----GDENVKGIFVNIFGGIMK-CDVIA--EGIVEAVKEVDLTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N + G + + ++ GL IE P ATM ++ ++ + A
Sbjct: 352 TNVELG----KKILKDSGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q4L5U8|SUCC_STAHJ Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=sucC PE=3 SV=1
Length = 388
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 174/404 (43%), Gaps = 66/404 (16%)
Query: 41 DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG 100
+E +K L + VVK + G RGK+G V + L++ T+ E LGK++ ++ G
Sbjct: 29 EEAVEKAKELDTEIYVVKAQIHAGGRGKAGGVKIAKSLSEVETYANELLGKQL-VTHQTG 87
Query: 101 P----ITTFIIEPFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPT 154
P + IE +E+Y+ V +R ++ SE GG EIEE + T
Sbjct: 88 PEGKEVKRLYIEQGCDIQKEYYVGFVIDRATDRITLMASEEGGTEIEE-------VAAKT 140
Query: 155 GACLASETSAPLVATLPLEIR-------------GEIQEFIKSVFTLFQDLDFTFLEMNP 201
+ ET P+V P + R + +F+ S++ +F + D + +E+NP
Sbjct: 141 PEKIFKETIDPVVGLSPYQARRIAFNINIPKESINKAAKFLISLYNVFIEKDCSIVEINP 200
Query: 202 F-TLVDRKPYPLDMRGELDDTAAF--KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTS 258
T + + LD + DD A F K+ ++ ++E P E +
Sbjct: 201 LVTTGEGEVLALDAKINFDDNALFRHKDIQELRDLEEEDP---------------KEIEA 245
Query: 259 ASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYAR 318
+ + + G I MV G G ++ DT+ G N+ + G + +V + +
Sbjct: 246 SKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFG--GNPANFLDVGGGATKEKVTEAFK 303
Query: 319 VVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378
+++ D + + + I GGI DV A GI+ A+KE E L L VR G
Sbjct: 304 IIL----GDDNVKGIFVNIFGGIMK-CDVIA--EGIVAAVKEVELTLP-----LVVRLEG 351
Query: 379 PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422
N +RG + + E GL IE P ATM ++ ++ + A
Sbjct: 352 TNVERG----KEILNESGLAIE---PAATMAEGAQKIVKLVKEA 388
>sp|Q4FP29|SUCC_PELUB Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelagibacter
ubique (strain HTCC1062) GN=sucC PE=3 SV=1
Length = 386
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 178/396 (44%), Gaps = 58/396 (14%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I E+ +K++LK++ G +P + + + DEL +K L + K V+K + G
Sbjct: 3 IHEHQAKQILKKY-----GAVVP----EGVFAFTVDELIEKAKSLKTEKFVLKAQIHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G V + + + + KE LGK + ++ GP + +E ++EFYL+
Sbjct: 54 RGKAGGVKILNTIDELSVAAKELLGKTL-VTHQTGPAGREVKRLYVEESSNIDKEFYLSC 112
Query: 122 VSERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETS----APLVATLPL--E 173
+ +R + F S+ GG++IEE +K + T + E S ++A L +
Sbjct: 113 LVDRASSKIVFISSDQGGMDIEEVAEKTPEKIITTKIDITDEISDADCEKIIAIYALADD 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFKNFK---- 228
+ + IKSV+ +F D +E+NP L ++K LD + D A F++ +
Sbjct: 173 AKKQAIALIKSVYKMFLGTDANMVEVNPLILTKEKKIICLDAKVNFDSNALFRHPEIIEL 232
Query: 229 KWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADT 288
+ N E P + ++ HDL A +K G I MV G G ++ D
Sbjct: 233 RDLNEEDP-------TEIDASKHDL-----AYIKLD-----GSIGCMVNGAGLAMATMDI 275
Query: 289 VGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVA 348
+ Y E N+ + G ++ +V ++++ +D + + + I GGI DV
Sbjct: 276 IK--LYGEEPANFLDVGGGASKEKVSAALKIIL----SDKNVKGILINIFGGIMR-CDVL 328
Query: 349 ATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384
A G++ A KE + L VR G N++ G
Sbjct: 329 A--QGVVDAAKEIN-----ISVPLVVRLAGTNFKEG 357
>sp|Q9KA20|SUCC_BACHD Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=sucC PE=3 SV=1
Length = 386
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 175/412 (42%), Gaps = 64/412 (15%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I EY K LL+++ G +P + +V + + DE + L S VVK + G
Sbjct: 3 IHEYQGKELLRQY-----GVAVP--NGKV--AFSVDEAVEAAKELGSNVCVVKAQIHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G V + +L + T+ E LGK + ++ GP + +IE +E+Y+ +
Sbjct: 54 RGKAGGVKVAKNLDEVRTYADEILGKTL-VTHQTGPEGKEVKRLLIEEGCDIQKEYYVGL 112
Query: 122 VSERLGCSVSF--SECGGIEIEENWDKV-----KTIFVPTGACLASET-SAPLVATLPLE 173
V +R V SE GG EIEE +K K I P + +P E
Sbjct: 113 VLDRATSRVVMMASEEGGTEIEEVAEKTPEKIFKEIIDPVVGLQGFQARRLAFNINIPKE 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPF-TLVDRKPYPLDMRGELDDTAAFKNFKKWGN 232
+ G+ +F+ ++ +F + D + E+NP T D K LD + D A +++
Sbjct: 173 LVGQAVKFMLGLYKVFVEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNAL---YRQKAI 229
Query: 233 IEFPLPFGRAMSATESFIHDLDEKT-----SASLKFTVLNPKGRIWTMVAGGGASVIYAD 287
+EF DLDE+ ++ + ++ G I MV G G ++ D
Sbjct: 230 LEF---------------RDLDEEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMATMD 274
Query: 288 TVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDV 347
+ Y E N+ + G +V + ++++ +D + + I GGI DV
Sbjct: 275 IIKH--YNGEPANFLDVGGGATAEKVTEAFKIIL----SDESVKGIFVNIFGGIMK-CDV 327
Query: 348 AATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
A G+IQA KE + L VR G N G K+ EE GL I
Sbjct: 328 IA--EGVIQATKE-----VGLSIPLVVRLEGTNVDLGKKKL----EESGLNI 368
>sp|A4IM83|SUCC_GEOTN Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=sucC PE=3 SV=1
Length = 386
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 182/409 (44%), Gaps = 58/409 (14%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I EY +K +L+ + G +P + +V + DE + L + VVK + G
Sbjct: 3 IHEYQAKEILRSY-----GVSVP--NGRV--AFTVDEAVEAAKALGTSVCVVKAQIHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G V + L + T+ E LGK + ++ GP + +IE +E+Y+ +
Sbjct: 54 RGKAGGVKVAKSLEEVRTYASELLGKVL-VTHQTGPEGKEVKRLLIEEGCDIQKEYYIGL 112
Query: 122 VSERLGCSVSF--SECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLV--ATLPLE 173
V +R V SE GG EIEE +K+ +V L + + L +P +
Sbjct: 113 VVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYVDPAVGLQAFQARRLAFNINIPKK 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFK--NFKKW 230
+ + +F+ ++ +F D D + E+NP + D K LD + D A ++ + ++
Sbjct: 173 LVNQAVKFMMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYRHPDIMEY 232
Query: 231 GNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVG 290
+++ P E+ +DL+ + L+ G I MV G G ++ D +
Sbjct: 233 RDLDEEDP-----KEVEASKYDLN--------YIALD--GNIGCMVNGAGLAMATMDIIK 277
Query: 291 DLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAAT 350
Y E N+ + G +E +V + ++++ +DP+ + + I GGI DV A+
Sbjct: 278 Y--YGGEPANFLDVGGGASEEKVTEAFKIIL----SDPNVKGIFVNIFGGIMK-CDVIAS 330
Query: 351 FNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
GI+ A K+ + L VR G N + G + + +E GL I
Sbjct: 331 --GIVAATKQ-----VGLTLPLVVRLEGTNVELG----KKILQESGLNI 368
>sp|Q5WFP4|SUCC_BACSK Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus clausii
(strain KSM-K16) GN=sucC PE=3 SV=1
Length = 386
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 181/409 (44%), Gaps = 58/409 (14%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I EY K +L+ + G +P + +V + + DE + L S VVK + G
Sbjct: 3 IHEYQGKEILRSY-----GVAVP--NGKV--AFSVDEAVEAAKELGSSVSVVKAQIHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G V + +L + T+ +E LGK + ++ GP + +IE E+Y+ +
Sbjct: 54 RGKAGGVKVAKNLDEVRTYAEEILGKTL-VTHQTGPAGKEVKRLLIEEGCDIKSEYYIGL 112
Query: 122 VSERLGCSVSF--SECGGIEIEENWDKV-KTIF--VPTGACLASETSAPLVA---TLPLE 173
V +R SV SE GG EIEE +K + IF V A A +A +P E
Sbjct: 113 VVDRATSSVVLMASEEGGTEIEEVAEKTPEKIFKEVIDPAVGLQGFQARRIAFNINIPKE 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPF-TLVDRKPYPLDMRGELDDTAAF--KNFKKW 230
+ G+ +F+ ++ +F D D + E+NP T D K LD + D A + K+ +
Sbjct: 173 LVGQAVKFMMGLYQVFVDKDASIAEINPLVTTGDGKVMALDAKFNFDSNALYRHKDILEL 232
Query: 231 GNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVG 290
++E + E+ HDL+ + L+ G I MV G G ++ D +
Sbjct: 233 RDLEE-----EDVKEIEASKHDLN--------YIALD--GNIGCMVNGAGLAMATMDIIK 277
Query: 291 DLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAAT 350
Y + N+ + G +V + ++++ +D + + + I GGI +A
Sbjct: 278 H--YNGDPANFLDVGGGATAEKVTEAFKLIL----SDENVKGIFVNIFGGIMKCDIIA-- 329
Query: 351 FNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
+G+I A KE + L VR G N + G + + +E GL I
Sbjct: 330 -DGVIAATKE-----VGLEIPLVVRLEGTNVELG----KKMLKESGLNI 368
>sp|A5UCR4|SUCC_HAEIE Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus
influenzae (strain PittEE) GN=sucC PE=3 SV=1
Length = 389
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 59/376 (15%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY +K+L EH+ LP+K+ V +S DE+ L+ K K + G
Sbjct: 2 NLHEYQAKQLF-EHYG------LPVKNGAVCQSV--DEVDLVLAQLSGDKWAAKCQVHAG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEM---EMSECKGPITTFIIEPFIPHNEEFYLNI 121
RGK+G V L D+ +A +F ++ LG+ + + + P+ E ++EFYL+
Sbjct: 53 GRGKAGGVKLVQDVEEARSFAEKWLGQRLVTFQTDKLGQPVNQIYFEETCDIDKEFYLSA 112
Query: 122 VSERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLP-------- 171
V +R V F S GG++IEE + T L PL LP
Sbjct: 113 VVDRASQKVVFIASPAGGMDIEE-------VAQNTPHLLHKVEIDPLFGGLPYQGRELAF 165
Query: 172 -LEIRGEIQEFIKSVFT----LFQDLDFTFLEMNPFTLVDRKPYP-LDMRGELDDTAAFK 225
L + G + +F LF + D + LE+NP L + LD + +DD A F+
Sbjct: 166 KLGLSGTQNKQFTDIFMGLSRLFLEKDLSLLEVNPLVLTQQGNLVCLDAKIAVDDNALFR 225
Query: 226 NFKKWGNIEFPLPFGRAMSATESFI-HDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 284
+ + +SA + +D E + + + +G I MV G G ++
Sbjct: 226 H--------------KDLSALQDLTQNDAREAEAEKFQLNYVALEGDIGCMVNGAGLAMG 271
Query: 285 YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANF 344
D V Y + N+ + G + V + ++++ DP + + I GGI
Sbjct: 272 TMDIVKL--YGGKPANFLDVGGGATKERVAEAFKIIL----TDPSVKVILVNIFGGIVRC 325
Query: 345 TDVAATFNGIIQALKE 360
+A G+I A+ E
Sbjct: 326 DLIA---EGVIAAVNE 338
>sp|C5D8V2|SUCC_GEOSW Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus sp.
(strain WCH70) GN=sucC PE=3 SV=1
Length = 386
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 178/409 (43%), Gaps = 58/409 (14%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I EY +K +L+ + + + + +E A KE C VVK + G
Sbjct: 3 IHEYQAKEILRNYGVSVPNGRVAFTVEEAVE-------AAKELGSPVC--VVKAQIHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G V + L + T+ E LGK + ++ GP + +IE +E+Y+ +
Sbjct: 54 RGKAGGVKVAKSLDEVRTYASELLGKVL-VTHQTGPEGKEVKRLLIEEGCDIKKEYYIGL 112
Query: 122 VSERLGCSVSF--SECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLV--ATLPLE 173
V +R V SE GG EIEE +K+ ++ L + + L +P E
Sbjct: 113 VVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGLQAFQARRLAFNINIPKE 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAF--KNFKKW 230
+ + +F+ ++ +F D D + E+NP + D K LD + D A + K+ ++
Sbjct: 173 LVNQAVKFMMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYRHKDILEY 232
Query: 231 GNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVG 290
+++ P E+ +DL+ + L+ G I MV G G ++ D +
Sbjct: 233 RDLDEEDP-----KEVEASKYDLN--------YIALD--GNIGCMVNGAGLAMATMDIIK 277
Query: 291 DLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAAT 350
Y E N+ + G +V + ++++ +DP+ + + I GGI DV A+
Sbjct: 278 Y--YGGEPANFLDVGGGATAEKVTEAFKIIL----SDPNVKGIFVNIFGGIMK-CDVIAS 330
Query: 351 FNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
GI++A K+ + L VR G N + G + + +E GL I
Sbjct: 331 --GIVEATKQ-----VGLNLPLVVRLEGTNVELG----KKILQESGLNI 368
>sp|Q57663|SUCC_METJA Succinyl-CoA ligase [ADP-forming] subunit beta
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=sucC PE=3
SV=1
Length = 364
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 182/420 (43%), Gaps = 83/420 (19%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSC----KLVVKPD 60
K+ EY++K + K++ G +P ES L KE L S ++V+K
Sbjct: 2 KLHEYEAKNIFKKY-----GIPVP-------ESF----LVSKEDDLNSINVDKEVVLKAQ 45
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG-PITTFIIEPFIPHNEEFYL 119
+L G RGK+G + L + F+K+ +E+ E KG + ++E +P +E+Y+
Sbjct: 46 VLVGGRGKAGGI---LFASNKEEFIKKA--EELFNKEVKGEKVEKILVEEKLPIEKEYYV 100
Query: 120 NIVSERLGCS--VSFSECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLV--ATLP 171
+I+ +R + FS GG++IEE N +K+ + + +V A LP
Sbjct: 101 SIIIDRDAKKPLIIFSTEGGVDIEEVAEKNPEKIIKYHIDVRKPFLPYIARWIVKEAKLP 160
Query: 172 LEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFKN---- 226
G++ + I ++ +F++LD T +E+NP + D Y D LDD AAF++
Sbjct: 161 SNEIGKVADVIYKLYKIFKELDATMVEINPLVITKDGNVYAADAVLHLDDDAAFRHNYEE 220
Query: 227 FKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYA 286
F+++ N E LPF +LD G + + G G ++
Sbjct: 221 FEEYKNKE-KLPFAYV---------ELD---------------GDVAVIGNGAGLTLASM 255
Query: 287 DTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTD 346
D + +LG + + G + V R V++ + + I GGI +
Sbjct: 256 DIINNLGRKP--ACFLDIGGGADAETVKLALRKVLENKNV----KGIFINILGGITRCDE 309
Query: 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEA 406
VA GI++ LKE + A RM G N + G R + EE G+P E EA
Sbjct: 310 VA---KGIVEVLKEHPNVKFAVRMM------GTNEEIG----RKILEEHGIPYETSMEEA 356
>sp|A5UIW0|SUCC_HAEIG Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus
influenzae (strain PittGG) GN=sucC PE=3 SV=1
Length = 394
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 156/376 (41%), Gaps = 59/376 (15%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY +K+L EH+ LP+K+ V +S DE+ L+ K K + G
Sbjct: 2 NLHEYQAKQLF-EHYG------LPVKNGAVCQSV--DEVDLVLAQLSGDKWAAKCQVHAG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEM---EMSECKGPITTFIIEPFIPHNEEFYLNI 121
RGK+G V L D+ +A +F ++ LG+ + + + P+ E ++EFYL+
Sbjct: 53 GRGKAGGVKLVQDVEEARSFAEKWLGQRLVTFQTDKLGQPVNQIYFEETCDIDKEFYLSA 112
Query: 122 VSERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIR---- 175
V +R V F S GG++IEE + T L PL LP + R
Sbjct: 113 VVDRASQKVVFIASPAGGMDIEE-------VAQNTPHLLHKVEIDPLFGGLPYQGRELAF 165
Query: 176 ---------GEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYP-LDMRGELDDTAAFK 225
+ + + LF + D + +E+NP L + LD + +DD A F+
Sbjct: 166 KLGLSDAQNKQFTDIFMGLSRLFLEKDLSLVEVNPLVLTQQGNLVCLDAKIAVDDNALFR 225
Query: 226 NFKKWGNIEFPLPFGRAMSATESFI-HDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 284
+ + +SA + +D E + + + +G I MV G G ++
Sbjct: 226 H--------------KDLSALQDLTQNDAREAEAEKFQLNYVALEGDIGCMVNGAGLAMG 271
Query: 285 YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANF 344
D V Y + N+ + G + V + ++++ DP + + I GGI
Sbjct: 272 TMDIVK--LYGGKPANFLDVGGGATKERVAEAFKIIL----TDPSVKVILVNIFGGIVRC 325
Query: 345 TDVAATFNGIIQALKE 360
+A G+I A+ E
Sbjct: 326 DLIA---EGVIAAVNE 338
>sp|Q5L0N7|SUCC_GEOKA Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus
kaustophilus (strain HTA426) GN=sucC PE=3 SV=1
Length = 386
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 176/414 (42%), Gaps = 68/414 (16%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I EY +K +L+ + + + + +E A KE C VVK + G
Sbjct: 3 IHEYQAKEILRSYGVSVPNGRVAFTVDEAVE-------AAKELGAPVC--VVKAQIHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G V + L + T+ E LGK + ++ GP + +IE +E+Y+ +
Sbjct: 54 RGKAGGVKVAKSLEEVRTYASELLGKVL-VTHQTGPEGKEVKRLLIEEGCDIQKEYYIGL 112
Query: 122 VSERLGCSVSF--SECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLV--ATLPLE 173
V +R V SE GG EIEE +K+ ++ L + + L +P
Sbjct: 113 VVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGLQAFQARRLAFNINIPKH 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFKNFKKWGN 232
+ + +F+ ++ +F D D + E+NP + D K LD + D A +++
Sbjct: 173 LVNQAVKFMMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYRH---PDI 229
Query: 233 IEFPLPFGRAMSATESFIHDLDEK-------TSASLKFTVLNPKGRIWTMVAGGGASVIY 285
+E+ DLDE+ + L + L+ G I MV G G ++
Sbjct: 230 LEY---------------RDLDEEDPKEVEASKYDLNYIALD--GNIGCMVNGAGLAMAT 272
Query: 286 ADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFT 345
D + Y E N+ + G +E +V + ++++ +DP+ + + I GGI
Sbjct: 273 MDIIKY--YGGEPANFLDVGGGASEEKVREAFKIIL----SDPNVKGIFVNIFGGIMK-C 325
Query: 346 DVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
DV A+ GI+ A K+ + L VR G N + G + + +E GL I
Sbjct: 326 DVIAS--GIVAATKQ-----VGLTLPLVVRLEGTNVELG----KKILQESGLNI 368
>sp|B2V8I4|SUCC_SULSY Succinyl-CoA ligase [ADP-forming] subunit beta
OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=sucC
PE=3 SV=1
Length = 389
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 175/417 (41%), Gaps = 72/417 (17%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
K+ E+ +K + +++ LP+ + + E + L + +VVK + G
Sbjct: 2 KVHEHQAKEIFRKY-------GLPVPRGY--PAFDVKEAVEAAEELGTWPVVVKAQIHAG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG---PITTFIIEPFIPHNEEFYLNI 121
RGK+G V L + + E LGK++ + P++ IE ++EFY+ I
Sbjct: 53 GRGKAGGVKLAKSIEEVQQIASELLGKKLATFQTGPEGLPVSRLYIEEATAIDKEFYVAI 112
Query: 122 VSERLGCS--VSFSECGGIEIEE----NWDKV--KTI--FVPTGACLASETSAPLVATLP 171
+R + S GG+EIEE N + + +TI F+ + A E + L LP
Sbjct: 113 TLDRSKSKPIIMVSAAGGMEIEEVAATNPEAIITQTIEPFIGLRSYHARELALKL--GLP 170
Query: 172 LEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFKNFKKW 230
+ + +++ ++ +LD + +E+NP L D LD + E DD F++ +
Sbjct: 171 KNLLNKAASIFTTLYKIYIELDASMVEINPLVLTKDGNIVILDAKIEFDDNGLFRHPE-- 228
Query: 231 GNIEFPLPFGRAMSATESFIHDLDEKTSAS--------LKFTVLNPKGRIWTMVAGGGAS 282
I ++D+ T S + G I MV G G +
Sbjct: 229 -------------------IMEMDDPTQISPLEVEAKKFNLNYIKLDGNIACMVNGAGLA 269
Query: 283 VIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342
+ DT+ G E N+ + G+ N ++ ++++ +DP+ + + I GGI
Sbjct: 270 MSTMDTIKLAG--GEPANFLDVGGSANATQIANAFKIIL----SDPNVKAIFINIFGGIL 323
Query: 343 NFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
+A GII A KE + + + VR G N + G + + +E GLP+
Sbjct: 324 RCDRLA---EGIITAAKE-----VSINVPVIVRMEGTNVELG----KKMLQESGLPL 368
>sp|B9DPG0|SUCC_STACT Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
carnosus (strain TM300) GN=sucC PE=3 SV=1
Length = 388
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 179/426 (42%), Gaps = 77/426 (18%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I EY K + F+ + +P+ +V + +E +K L + VVK + G
Sbjct: 3 IHEYQGKEI----FRSMG---VPVPEGRV--AFTAEEAVEKAKELDTDVYVVKAQIHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G V + L++ + E LGK++ ++ GP + IE +E+Y+
Sbjct: 54 RGKAGGVKIAKSLSEVEAYANELLGKQL-VTHQTGPEGKEVKRLYIEEGADIKKEYYVGF 112
Query: 122 VSERLGCSVSF--SECGGIEIEENWDKV-KTIFVPTGACLASETSAPLVATLPLEIR--- 175
V +R V+ SE GG EIEE K + IF ET P+V P + R
Sbjct: 113 VIDRATDRVTLMASEEGGTEIEEVAAKSPEKIF--------KETIDPVVGLAPFQARRIA 164
Query: 176 ----------GEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAF 224
+ +F+ +++ +F + D + +E+NP L + LD + DD A F
Sbjct: 165 FNINIPKESINKAAKFLIALYNVFIEKDCSIVEINPLVLTGEGDVLALDAKINFDDNALF 224
Query: 225 --KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGAS 282
K+ + ++E P E ++ + + G I MV G G +
Sbjct: 225 RHKDILELRDLEEEDP---------------KEIEASKYDLSYIALDGDIGCMVNGAGLA 269
Query: 283 VIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342
+ DT+ G N+ + G + +V + ++++ D + + + I GGI
Sbjct: 270 MATMDTINHFG--GNPANFLDVGGGATKEKVTEAFKIIL----GDDNVKGIFVNIFGGIM 323
Query: 343 NFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVY 402
+A GI+ A+KE + L L VR G N + G + + ++ GL IE
Sbjct: 324 RCDIIA---EGIVAAVKEVDLTLP-----LVVRLEGTNVELG----KQILKDSGLAIE-- 369
Query: 403 GPEATM 408
P ATM
Sbjct: 370 -PAATM 374
>sp|A4VKQ1|SUCC_PSEU5 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas
stutzeri (strain A1501) GN=sucC PE=3 SV=1
Length = 388
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 154/375 (41%), Gaps = 57/375 (15%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY K+L E+ LP+ ++S E A+ + + VVK + G
Sbjct: 2 NLHEYQGKQLFAEY-------GLPVSKGYAVDSPK--EAAEACDKIGGTQWVVKAQVHAG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEM--EMSECKG-PITTFIIEPFIPHNEEFYLNI 121
RGK+G V L +A F ++ L K + ++ G P++ ++E ++E YL
Sbjct: 53 GRGKAGGVKLVRSKDEARAFAQQWLDKRLVTYQTDANGQPVSKILVEACTDIDKELYLGA 112
Query: 122 VSERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIR---- 175
V +R + F S GG++IE+ + T + T PLV P + R
Sbjct: 113 VVDRASRRIVFMASTEGGVDIEK-------VAHDTPEKILKATIDPLVGAQPFQARELAF 165
Query: 176 ------GEIQEFIK---SVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFK 225
++++F+ + LFQD D LE+NP + D + LD + +D A ++
Sbjct: 166 QLGLKGDQVKQFVHIFVGLAQLFQDYDLALLEVNPLVIKTDGNLHCLDAKINIDSNAIYR 225
Query: 226 NFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIY 285
P R M+ D E +A + + G I MV G G ++
Sbjct: 226 Q-----------PKLRDMADPSQ--DDPREAHAAKWELNYVALDGNIGCMVNGAGLAMGT 272
Query: 286 ADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFT 345
D V G A N+ + G E V + ++++ +D + + I GGI
Sbjct: 273 MDIVNLHGGAP--ANFLDVGGGATEERVTEAFKIIL----SDSNVAAVLVNIFGGIVRCD 326
Query: 346 DVAATFNGIIQALKE 360
+A GII A++E
Sbjct: 327 MIA---EGIIGAVRE 338
>sp|Q4ZUW7|SUCC_PSEU2 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=sucC PE=3 SV=1
Length = 388
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 172/414 (41%), Gaps = 68/414 (16%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
+ EY K+L E+ LP+ +++ + A+ + + VVK + G
Sbjct: 3 LHEYQGKQLFAEY-------GLPVSKGYAVDTP--EAAAEACDKIGGTEWVVKAQVHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEM--EMSECKG-PITTFIIEPFIPHNEEFYLNIV 122
RGK+G V L AA F ++ LGK + ++ G P+T ++E +E YL V
Sbjct: 54 RGKAGGVKLVRSKEDAAAFAQQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAV 113
Query: 123 SERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRG---- 176
+R + F S GG++IE+ I T + T PLV P + R
Sbjct: 114 VDRSSRRIVFMASTEGGVDIEK-------IAHDTPEKILKATIDPLVGAQPFQGRDLAFQ 166
Query: 177 ------EIQEFIKSVFT----LFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFK 225
++ +F K +FT LFQD D LE+NP + D + LD + +D A ++
Sbjct: 167 LGLEGKQVTQFAK-IFTGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYR 225
Query: 226 NFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIY 285
K G F P D E +A + + +G I MV G G ++
Sbjct: 226 QPKLKG---FHDPSQ----------DDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGT 272
Query: 286 ADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFT 345
D V G + N+ + G + V + ++++ +D + + I GGI
Sbjct: 273 MDIVNLHG--GKPANFLDVGGGATKERVTEAFKIIL----SDANVAAVLVNIFGGIVRCD 326
Query: 346 DVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
+A GII A+KE K+ + VR G N + G + LAE GL I
Sbjct: 327 MIA---EGIIGAVKEVGVKIP-----VVVRLEGNNAELG---AKVLAES-GLNI 368
>sp|Q883Z4|SUCC_PSESM Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=sucC PE=1 SV=1
Length = 388
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 172/414 (41%), Gaps = 68/414 (16%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
+ EY K+L E+ LP+ +++ + A+ + + VVK + G
Sbjct: 3 LHEYQGKQLFAEY-------GLPVSKGYAVDTP--EAAAEACDKIGGTEWVVKAQVHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEM--EMSECKG-PITTFIIEPFIPHNEEFYLNIV 122
RGK+G V L AA F ++ LGK + ++ G P+T ++E +E YL V
Sbjct: 54 RGKAGGVKLVRSKEDAAAFAQQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAV 113
Query: 123 SERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRG---- 176
+R + F S GG++IE+ I T + T PLV P + R
Sbjct: 114 VDRSSRRIVFMASTEGGVDIEK-------IAHDTPEKILKATIDPLVGAQPFQGRDLAFQ 166
Query: 177 ------EIQEFIKSVFT----LFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFK 225
++ +F K +FT LFQD D LE+NP + D + LD + +D A ++
Sbjct: 167 LGLEGKQVTQFAK-IFTGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYR 225
Query: 226 NFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIY 285
K G F P D E +A + + +G I MV G G ++
Sbjct: 226 QPKLKG---FHDPSQ----------DDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGT 272
Query: 286 ADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFT 345
D V G + N+ + G + V + ++++ +D + + I GGI
Sbjct: 273 MDIVNLHG--GKPANFLDVGGGATKERVTEAFKIIL----SDTNVAAVLVNIFGGIVRCD 326
Query: 346 DVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
+A GII A+KE K+ + VR G N + G + LAE GL I
Sbjct: 327 MIA---EGIIGAVKEVGVKIP-----VVVRLEGNNAELG---AKVLAES-GLNI 368
>sp|Q48K68|SUCC_PSE14 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=sucC PE=3 SV=1
Length = 388
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 170/414 (41%), Gaps = 68/414 (16%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
+ EY K+L E+ LP+ +++ + A+ + + VVK + G
Sbjct: 3 LHEYQGKQLFAEY-------GLPVSKGYAVDTP--EAAAEACDKIGGTEWVVKAQVHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG---PITTFIIEPFIPHNEEFYLNIV 122
RGK+G V L AA F ++ LGK + + P+T ++E +E YL V
Sbjct: 54 RGKAGGVKLVRSKEDAAAFAQQWLGKRLVTYQTDANGQPVTKILVESCTHIAKELYLGAV 113
Query: 123 SERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRG---- 176
+R + F S GG++IE+ I T + T PLV P + R
Sbjct: 114 VDRSSRRIVFMASTEGGVDIEK-------IAHDTPEKILKATIDPLVGAQPFQGRDLAFQ 166
Query: 177 ------EIQEFIKSVFT----LFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFK 225
++ +F K +FT LFQD D LE+NP + D + LD + +D A ++
Sbjct: 167 LGLEGKQVTQFAK-IFTGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYR 225
Query: 226 NFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIY 285
K G F P D E +A + + +G I MV G G ++
Sbjct: 226 QPKLKG---FHDPSQ----------DDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGT 272
Query: 286 ADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFT 345
D V G + N+ + G + V + ++++ +D + + I GGI
Sbjct: 273 MDIVNLHG--GKPANFLDVGGGATKERVTEAFKIIL----SDTNVAAVLVNIFGGIVRCD 326
Query: 346 DVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
+A GII A+KE K+ + VR G N + G + LAE GL I
Sbjct: 327 MIA---EGIIGAVKEVGVKIP-----VVVRLEGNNAELG---AKVLAES-GLNI 368
>sp|A9KBQ4|SUCC_COXBN Succinyl-CoA ligase [ADP-forming] subunit beta OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=sucC PE=3 SV=1
Length = 390
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 167/396 (42%), Gaps = 49/396 (12%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
+ EY SK LLK++ +P+ +++V+ N D + + VVK + G
Sbjct: 3 LHEYQSKHLLKKY-------NIPVPASEVV--FNPDAAVDAAAKIGGDRWVVKAQVHAGG 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEM---EMSECKGPITTFIIEPFIPHNEEFYLNIV 122
RGK+G V L + + + VK LG + + E P+ ++E E YL V
Sbjct: 54 RGKAGGVRLVKNKEELKSAVKALLGTRLVTYQTDERGQPVNQILVEQTSDIARELYLGAV 113
Query: 123 SERLGCSVSF--SECGGIEI----EENWDKVKTIFVPTGACLASETSAPLVATLPLEIRG 176
+R + F S GG+EI E++ +K+ + V L L L L+
Sbjct: 114 IDRASQRIVFMASTEGGVEIEKVAEKSPEKILKVTVDPAIGLQPFQCRQLFFGLGLQDLK 173
Query: 177 EIQEF---IKSVFTLFQDLDFTFLEMNPFTLVDR-KPYPLDMRGELDDTAAFKNFKKWGN 232
+++ F + ++ LF + D + LE+NP + + LD + +DD+A ++ +
Sbjct: 174 QMRSFTDIVMGLYRLFTERDLSLLEINPLVITGSGELICLDAKINIDDSALYRQSEL--- 230
Query: 233 IEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDL 292
R M T D E + + + G I MV G G ++ D +
Sbjct: 231 --------REMRDTTQ--EDEHETMAQQWELNYIKLDGNIGCMVNGAGLAMATMDLIKLS 280
Query: 293 GYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFN 352
G + N+ + G+ + V + R+++ +D + + + I GGI +A +
Sbjct: 281 G--GDPANFLDVGGSATKERVTEAFRIIV----SDKNVKGILVNIFGGIVRCDLIA---D 331
Query: 353 GIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKM 388
GII A+KE + + VR G N Q G K+
Sbjct: 332 GIISAVKE-----VGIDVPVVVRLEGNNAQLGAKKL 362
>sp|A1UQV9|SUCC_BARBK Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3
SV=1
Length = 398
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 180/420 (42%), Gaps = 70/420 (16%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPW---LTSCKLVVKPDML 62
I EY +KRLL E+ P+ + + S + Q E W L VVK +
Sbjct: 3 IHEYQAKRLLHEYGA-------PVANGVAVYS-----VEQAEKWAKKLPGPLYVVKSQIH 50
Query: 63 FGKRGKSGLVALNLD----------LAQAATFVKECLGKEMEMSECKGP----ITTFIIE 108
G RGK L+ D + + VKE LGK + +++ GP + IE
Sbjct: 51 AGGRGKGNFKELDSDAKGGVRLAKSVEEVVANVKEMLGKTL-VTKQTGPEGKQVNRLYIE 109
Query: 109 PFIPHNEEFYLNIVSERLGCSVSF--SECGGIEIE----ENWDKVKTIFVPTGACLASET 162
E YL+++ +R V+F S GG++IE E +K+ T+ + +
Sbjct: 110 DGANIERELYLSLLIDRTTGRVAFVVSTEGGMDIETVAAETPEKICTLSIDPAEGVTDAD 169
Query: 163 SAPLVATLPL--EIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDR-KPYPLDMRGELD 219
L L L R + ++ ++ F + D + LE+NP ++D + LD + D
Sbjct: 170 CVKLCDELNLSGNAREDGEKLFPILYKAFCEKDMSLLEINPLIVMDDGRLRVLDAKVSFD 229
Query: 220 DTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGG 279
+ A F++ G + + + A++ HD L + L+ G I MV G
Sbjct: 230 NNALFRHPDILGLRDISEEDPKEIEASK---HD--------LAYIALD--GMIGCMVNGA 276
Query: 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGG 339
G ++ D + Y +E N+ + G ++ +V +++ TADP+ + + I G
Sbjct: 277 GLAMATMDIIK--LYGAEPANFLDVGGGASKEKVTHAFKII----TADPNVKGILVNIFG 330
Query: 340 GIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
GI DV A G+I A+KE ++ L VR G N ++G +A+ + GL +
Sbjct: 331 GIMR-CDVIA--EGVIAAVKE-----VGLKVPLVVRLEGTNVEQG----KAIINDSGLNV 378
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,728,978
Number of Sequences: 539616
Number of extensions: 6694699
Number of successful extensions: 17579
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 430
Number of HSP's that attempted gapping in prelim test: 17329
Number of HSP's gapped (non-prelim): 474
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)