Query 014512
Match_columns 423
No_of_seqs 206 out of 1896
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02235 ATP citrate (pro-S)-l 100.0 5E-104 1E-108 797.3 43.2 418 1-422 1-422 (423)
2 COG0045 SucC Succinyl-CoA synt 100.0 2.6E-95 6E-100 716.6 39.7 374 4-421 1-386 (387)
3 PLN00124 succinyl-CoA ligase [ 100.0 2.7E-88 5.9E-93 691.5 41.0 375 2-420 26-421 (422)
4 PRK14046 malate--CoA ligase su 100.0 1.9E-82 4.2E-87 647.1 42.3 376 4-422 1-388 (392)
5 TIGR01016 sucCoAbeta succinyl- 100.0 3.2E-75 6.9E-80 595.3 41.2 371 4-419 1-385 (386)
6 KOG1447 GTP-specific succinyl- 100.0 1.2E-75 2.6E-80 548.0 29.5 372 4-418 20-410 (412)
7 PRK00696 sucC succinyl-CoA syn 100.0 4.9E-70 1.1E-74 557.4 42.0 372 4-420 1-386 (388)
8 KOG2799 Succinyl-CoA synthetas 100.0 7E-72 1.5E-76 539.7 16.1 375 4-421 23-423 (434)
9 PF08442 ATP-grasp_2: ATP-gras 100.0 1.2E-46 2.7E-51 350.8 18.6 191 5-204 1-202 (202)
10 PF13549 ATP-grasp_5: ATP-gras 100.0 3.3E-36 7.3E-41 284.7 12.1 204 3-218 7-222 (222)
11 KOG1254 ATP-citrate lyase [Ene 99.9 2.4E-29 5.1E-34 252.1 1.0 412 2-415 1-489 (600)
12 PF00549 Ligase_CoA: CoA-ligas 99.7 6.5E-18 1.4E-22 150.8 9.5 122 275-416 1-151 (153)
13 COG1042 Acyl-CoA synthetase (N 99.7 5.1E-17 1.1E-21 173.0 6.0 376 2-420 20-449 (598)
14 TIGR02717 AcCoA-syn-alpha acet 99.6 2.1E-14 4.5E-19 149.8 16.1 129 268-420 294-445 (447)
15 COG1042 Acyl-CoA synthetase (N 99.2 8.8E-12 1.9E-16 133.2 4.1 122 3-150 468-591 (598)
16 PF01071 GARS_A: Phosphoribosy 98.9 1E-08 2.3E-13 95.1 11.5 99 10-127 5-104 (194)
17 COG0151 PurD Phosphoribosylami 98.7 1.1E-07 2.3E-12 96.6 10.8 99 10-127 106-204 (428)
18 TIGR00514 accC acetyl-CoA carb 98.6 2.3E-06 5.1E-11 89.5 18.5 109 7-133 115-225 (449)
19 PRK01372 ddl D-alanine--D-alan 98.5 7.1E-06 1.5E-10 81.1 18.9 101 7-132 98-198 (304)
20 TIGR01161 purK phosphoribosyla 98.5 9.3E-06 2E-10 82.2 19.4 100 7-132 98-198 (352)
21 PF02786 CPSase_L_D2: Carbamoy 98.5 3.2E-06 6.9E-11 79.9 14.7 108 9-132 3-110 (211)
22 PLN02257 phosphoribosylamine-- 98.5 1.5E-06 3.2E-11 90.8 13.0 101 7-126 102-202 (434)
23 PRK09288 purT phosphoribosylgl 98.5 1.1E-05 2.3E-10 82.8 19.0 103 9-131 115-218 (395)
24 TIGR01142 purT phosphoribosylg 98.5 8.2E-06 1.8E-10 83.2 18.0 100 9-128 102-202 (380)
25 PRK13789 phosphoribosylamine-- 98.5 1.5E-06 3.3E-11 90.5 12.6 101 7-126 108-208 (426)
26 PRK07178 pyruvate carboxylase 98.5 7.6E-06 1.7E-10 86.3 17.7 107 7-131 114-222 (472)
27 PRK08462 biotin carboxylase; V 98.4 7.9E-06 1.7E-10 85.4 17.4 110 7-132 117-226 (445)
28 PRK00885 phosphoribosylamine-- 98.4 2.2E-06 4.7E-11 89.0 12.9 101 7-126 102-202 (420)
29 PRK08654 pyruvate carboxylase 98.4 1.7E-05 3.8E-10 84.2 19.6 109 7-133 115-225 (499)
30 PRK13790 phosphoribosylamine-- 98.4 2.5E-06 5.3E-11 87.6 12.7 97 7-126 67-163 (379)
31 PRK06019 phosphoribosylaminoim 98.4 2.1E-05 4.5E-10 80.4 19.3 98 9-132 102-200 (372)
32 PRK08591 acetyl-CoA carboxylas 98.4 1.8E-05 4E-10 82.7 19.3 107 8-132 116-224 (451)
33 PRK05586 biotin carboxylase; V 98.4 2.2E-05 4.8E-10 82.2 19.4 107 8-132 116-224 (447)
34 TIGR00877 purD phosphoribosyla 98.4 2.7E-06 5.8E-11 88.2 12.3 100 7-126 104-204 (423)
35 PRK12833 acetyl-CoA carboxylas 98.4 1.3E-05 2.8E-10 84.5 17.5 103 7-127 118-222 (467)
36 PLN02948 phosphoribosylaminoim 98.4 2.3E-05 4.9E-10 84.7 19.4 102 7-132 121-223 (577)
37 PRK06524 biotin carboxylase-li 98.4 1.9E-05 4E-10 83.0 17.4 100 6-129 141-242 (493)
38 TIGR02712 urea_carbox urea car 98.3 1E-05 2.2E-10 93.9 16.8 109 7-132 114-222 (1201)
39 PRK14569 D-alanyl-alanine synt 98.3 1.5E-05 3.3E-10 79.0 15.9 94 6-128 97-190 (296)
40 PRK06111 acetyl-CoA carboxylas 98.3 6.4E-05 1.4E-09 78.6 19.2 110 7-132 115-224 (450)
41 PRK12815 carB carbamoyl phosph 98.3 7.3E-06 1.6E-10 94.4 13.1 103 9-133 130-232 (1068)
42 PF02222 ATP-grasp: ATP-grasp 98.3 3.3E-05 7.1E-10 70.7 14.7 93 15-133 1-94 (172)
43 PRK08463 acetyl-CoA carboxylas 98.2 9E-05 2E-09 78.4 19.7 110 8-133 115-225 (478)
44 PF13535 ATP-grasp_4: ATP-gras 98.2 1.5E-05 3.2E-10 72.1 11.3 100 8-129 5-104 (184)
45 PLN02735 carbamoyl-phosphate s 98.2 9.5E-05 2.1E-09 85.4 19.3 101 9-131 704-804 (1102)
46 TIGR01235 pyruv_carbox pyruvat 98.1 7.7E-05 1.7E-09 86.0 18.0 107 7-131 115-223 (1143)
47 TIGR01369 CPSaseII_lrg carbamo 98.1 6.3E-05 1.4E-09 86.7 17.3 96 9-126 671-766 (1050)
48 COG0439 AccC Biotin carboxylas 98.1 7.7E-05 1.7E-09 77.8 16.3 109 8-132 116-224 (449)
49 TIGR01369 CPSaseII_lrg carbamo 98.1 1.9E-05 4.2E-10 90.9 12.8 102 9-132 129-230 (1050)
50 PRK12999 pyruvate carboxylase; 98.1 8.5E-05 1.9E-09 85.9 17.5 107 8-132 120-228 (1146)
51 PRK14573 bifunctional D-alanyl 98.1 0.00011 2.4E-09 82.6 18.0 100 6-127 567-671 (809)
52 PLN02735 carbamoyl-phosphate s 98.1 2.8E-05 6.1E-10 89.7 13.5 102 9-131 146-247 (1102)
53 PRK05294 carB carbamoyl phosph 98.1 3.4E-05 7.4E-10 89.0 13.0 102 9-132 130-231 (1066)
54 TIGR01205 D_ala_D_alaTIGR D-al 98.0 0.00043 9.3E-09 68.7 19.2 97 7-126 105-205 (315)
55 PRK14571 D-alanyl-alanine synt 98.0 0.00029 6.3E-09 69.7 16.2 90 8-127 96-185 (299)
56 KOG0237 Glycinamide ribonucleo 98.0 3.7E-05 8E-10 80.6 10.0 100 9-126 110-209 (788)
57 PRK14016 cyanophycin synthetas 97.9 4.5E-05 9.8E-10 84.6 11.0 92 7-123 214-306 (727)
58 TIGR02068 cya_phycin_syn cyano 97.9 4.4E-05 9.5E-10 86.2 10.9 90 8-122 214-304 (864)
59 PRK13278 purP 5-formaminoimida 97.9 0.00042 9.1E-09 70.6 16.6 95 10-133 126-221 (358)
60 PRK12815 carB carbamoyl phosph 97.9 0.00032 6.9E-09 81.1 17.5 93 9-126 672-764 (1068)
61 PF07478 Dala_Dala_lig_C: D-al 97.9 0.00014 2.9E-09 68.4 11.8 90 14-126 1-92 (203)
62 PRK07206 hypothetical protein; 97.9 0.00015 3.3E-09 74.9 12.5 99 8-124 109-210 (416)
63 PRK06395 phosphoribosylamine-- 97.8 0.00013 2.9E-09 76.2 11.7 95 8-127 106-205 (435)
64 COG0458 CarB Carbamoylphosphat 97.8 0.00014 3E-09 74.0 11.1 105 11-138 120-224 (400)
65 PRK01966 ddl D-alanyl-alanine 97.8 0.00013 2.9E-09 73.4 11.0 96 6-124 122-219 (333)
66 TIGR01435 glu_cys_lig_rel glut 97.8 0.00011 2.3E-09 81.0 10.9 93 8-124 476-571 (737)
67 PRK12767 carbamoyl phosphate s 97.8 0.00019 4.1E-09 71.6 11.7 92 9-129 113-206 (326)
68 PRK02186 argininosuccinate lya 97.8 0.00017 3.6E-09 81.9 12.6 96 8-127 108-203 (887)
69 PRK14568 vanB D-alanine--D-lac 97.8 0.0015 3.4E-08 66.0 18.5 93 7-126 132-224 (343)
70 PRK10446 ribosomal protein S6 97.8 0.00024 5.2E-09 70.4 11.8 95 7-124 99-195 (300)
71 PRK05784 phosphoribosylamine-- 97.8 0.00024 5.1E-09 75.3 12.3 102 7-126 109-219 (486)
72 PRK14572 D-alanyl-alanine synt 97.8 0.0002 4.4E-09 72.6 11.3 96 6-124 129-228 (347)
73 PRK05294 carB carbamoyl phosph 97.7 0.00028 6E-09 81.6 12.7 96 9-126 671-766 (1066)
74 PRK02471 bifunctional glutamat 97.7 0.00021 4.5E-09 79.5 10.9 92 7-122 488-582 (752)
75 PRK14570 D-alanyl-alanine synt 97.6 0.00048 1E-08 70.4 11.5 97 6-125 128-229 (364)
76 COG0026 PurK Phosphoribosylami 97.6 0.003 6.5E-08 63.8 16.7 97 12-132 104-200 (375)
77 TIGR02144 LysX_arch Lysine bio 97.6 0.00057 1.2E-08 66.6 10.9 94 9-122 89-183 (280)
78 PF08443 RimK: RimK-like ATP-g 97.5 0.00029 6.4E-09 65.2 7.9 90 10-122 6-97 (190)
79 TIGR00768 rimK_fam alpha-L-glu 97.4 0.0014 3E-08 63.4 11.8 86 8-114 89-174 (277)
80 COG0027 PurT Formate-dependent 97.4 0.00031 6.8E-09 69.0 7.0 81 24-119 126-206 (394)
81 TIGR03103 trio_acet_GNAT GNAT- 97.3 0.0016 3.5E-08 70.1 10.8 90 7-122 297-387 (547)
82 PLN02522 ATP citrate (pro-S)-l 97.3 0.0037 8.1E-08 67.6 13.2 127 269-419 167-314 (608)
83 PRK06849 hypothetical protein; 97.1 0.013 2.9E-07 60.0 15.6 88 9-123 118-205 (389)
84 PRK13277 5-formaminoimidazole- 97.1 0.0042 9.1E-08 63.0 11.0 95 12-133 131-228 (366)
85 COG0189 RimK Glutathione synth 97.0 0.0022 4.7E-08 64.4 8.5 92 11-125 123-216 (318)
86 PTZ00187 succinyl-CoA syntheta 97.0 0.014 3.1E-07 58.4 13.2 127 269-419 169-313 (317)
87 PF13607 Succ_CoA_lig: Succiny 96.9 0.011 2.3E-07 52.3 10.9 120 270-414 2-134 (138)
88 COG0074 SucD Succinyl-CoA synt 96.9 0.0084 1.8E-07 58.5 10.5 133 264-420 140-290 (293)
89 PRK06091 membrane protein FdrA 96.9 0.0099 2.1E-07 63.3 11.7 119 269-420 193-317 (555)
90 COG4770 Acetyl/propionyl-CoA c 96.7 0.059 1.3E-06 57.1 15.9 158 9-198 117-275 (645)
91 TIGR02717 AcCoA-syn-alpha acet 96.4 0.057 1.2E-06 56.8 13.7 126 269-419 150-288 (447)
92 KOG0238 3-Methylcrotonyl-CoA c 96.2 0.14 3.1E-06 53.6 15.0 110 8-133 112-221 (670)
93 PLN00125 Succinyl-CoA ligase [ 96.2 0.095 2.1E-06 52.2 13.4 126 269-419 150-294 (300)
94 TIGR01019 sucCoAalpha succinyl 96.0 0.11 2.4E-06 51.5 12.4 124 269-417 143-284 (286)
95 PF02655 ATP-grasp_3: ATP-gras 95.9 0.032 6.9E-07 50.2 7.7 81 9-127 5-85 (161)
96 COG1038 PycA Pyruvate carboxyl 95.8 0.19 4E-06 55.5 13.9 105 10-130 124-228 (1149)
97 PRK05678 succinyl-CoA syntheta 95.5 0.25 5.4E-06 49.1 12.9 126 269-419 145-288 (291)
98 COG1181 DdlA D-alanine-D-alani 95.3 0.32 6.9E-06 48.9 13.1 98 6-126 102-201 (317)
99 PLN02941 inositol-tetrakisphos 95.1 0.15 3.2E-06 51.5 9.9 76 11-114 111-196 (328)
100 PF15632 ATPgrasp_Ter: ATP-gra 94.9 0.17 3.6E-06 51.1 9.7 102 10-130 110-223 (329)
101 KOG0369 Pyruvate carboxylase [ 94.8 0.57 1.2E-05 50.8 13.7 103 11-130 151-254 (1176)
102 COG1759 5-formaminoimidazole-4 93.9 0.34 7.3E-06 48.3 9.0 109 12-151 129-240 (361)
103 TIGR00640 acid_CoA_mut_C methy 93.0 1.6 3.4E-05 38.2 11.1 95 302-420 34-128 (132)
104 COG3919 Predicted ATP-grasp en 92.1 0.53 1.2E-05 46.5 7.4 94 24-133 126-223 (415)
105 PRK02261 methylaspartate mutas 91.3 2.9 6.2E-05 36.8 10.7 112 280-421 19-136 (137)
106 PRK12458 glutathione synthetas 90.3 1.4 3.1E-05 44.6 9.0 70 25-113 139-210 (338)
107 cd02071 MM_CoA_mut_B12_BD meth 86.3 8.8 0.00019 32.7 10.0 101 285-414 19-119 (122)
108 COG0616 SppA Periplasmic serin 85.9 3 6.4E-05 41.9 7.9 60 307-381 79-140 (317)
109 TIGR02291 rimK_rel_E_lig alpha 85.5 1.3 2.8E-05 44.5 5.1 54 9-75 39-94 (317)
110 cd00578 L-fuc_L-ara-isomerases 85.0 17 0.00038 38.1 13.5 122 271-414 2-144 (452)
111 PRK06091 membrane protein FdrA 84.1 8.6 0.00019 41.5 10.6 106 299-420 373-494 (555)
112 PRK10949 protease 4; Provision 83.5 3.6 7.7E-05 45.2 7.8 62 306-381 345-408 (618)
113 cd07014 S49_SppA Signal peptid 83.0 7.8 0.00017 35.2 8.7 72 303-388 17-90 (177)
114 KOG1255 Succinyl-CoA synthetas 82.5 2.7 5.9E-05 40.4 5.5 104 265-385 172-278 (329)
115 cd02072 Glm_B12_BD B12 binding 82.5 16 0.00034 31.9 9.9 91 300-414 29-125 (128)
116 PF02601 Exonuc_VII_L: Exonucl 82.3 17 0.00036 36.3 11.5 123 269-419 14-145 (319)
117 TIGR01501 MthylAspMutase methy 80.9 31 0.00068 30.2 11.3 95 300-418 31-131 (134)
118 TIGR01380 glut_syn glutathione 80.6 8 0.00017 38.6 8.5 76 25-119 132-210 (312)
119 KOG0368 Acetyl-CoA carboxylase 79.2 20 0.00043 42.8 11.7 81 39-132 227-307 (2196)
120 TIGR00705 SppA_67K signal pept 79.2 6.1 0.00013 43.1 7.6 64 307-384 328-393 (584)
121 COG2185 Sbm Methylmalonyl-CoA 78.3 45 0.00098 29.7 11.4 96 302-421 44-139 (143)
122 cd07019 S49_SppA_1 Signal pept 78.2 12 0.00026 35.1 8.4 71 305-387 18-88 (211)
123 TIGR00683 nanA N-acetylneurami 76.4 38 0.00082 33.4 11.8 105 300-421 10-125 (290)
124 PRK04147 N-acetylneuraminate l 76.1 34 0.00073 33.7 11.4 109 299-421 12-128 (293)
125 cd00952 CHBPH_aldolase Trans-o 75.3 39 0.00084 33.7 11.6 103 305-422 23-133 (309)
126 PRK05246 glutathione synthetas 73.9 15 0.00032 36.6 8.3 69 26-113 134-203 (316)
127 PLN02417 dihydrodipicolinate s 72.6 51 0.0011 32.3 11.6 108 300-421 11-125 (280)
128 COG0075 Serine-pyruvate aminot 72.2 19 0.00042 37.2 8.7 83 263-362 74-161 (383)
129 TIGR00706 SppA_dom signal pept 71.2 21 0.00045 33.4 8.1 62 308-384 13-76 (207)
130 TIGR02313 HpaI-NOT-DapA 2,4-di 71.1 56 0.0012 32.3 11.6 107 299-422 9-125 (294)
131 cd07018 S49_SppA_67K_type Sign 71.0 17 0.00037 34.3 7.6 60 305-378 26-87 (222)
132 cd00408 DHDPS-like Dihydrodipi 68.5 69 0.0015 31.1 11.5 107 300-421 7-121 (281)
133 TIGR00237 xseA exodeoxyribonuc 68.1 46 0.001 34.9 10.7 121 269-417 129-255 (432)
134 cd07023 S49_Sppa_N_C Signal pe 68.1 35 0.00077 31.7 9.0 66 306-385 15-82 (208)
135 PRK12419 riboflavin synthase s 67.7 96 0.0021 28.1 13.0 115 282-420 29-149 (158)
136 COG0329 DapA Dihydrodipicolina 66.8 70 0.0015 31.8 11.2 104 305-421 19-128 (299)
137 PRK03170 dihydrodipicolinate s 66.8 89 0.0019 30.6 12.0 107 299-421 10-125 (292)
138 cd00394 Clp_protease_like Case 66.4 43 0.00093 29.5 8.8 60 309-385 12-73 (161)
139 cd00950 DHDPS Dihydrodipicolin 65.8 77 0.0017 30.9 11.2 108 300-421 10-124 (284)
140 PRK03620 5-dehydro-4-deoxygluc 63.2 92 0.002 30.9 11.3 110 299-422 16-131 (303)
141 PF00701 DHDPS: Dihydrodipicol 62.2 93 0.002 30.4 11.1 110 300-422 11-126 (289)
142 TIGR03249 KdgD 5-dehydro-4-deo 61.8 1.1E+02 0.0024 30.1 11.6 107 300-421 15-128 (296)
143 KOG0370 Multifunctional pyrimi 61.4 4.3 9.4E-05 46.0 1.6 89 24-131 510-598 (1435)
144 cd07022 S49_Sppa_36K_type Sign 60.2 56 0.0012 30.6 8.8 65 305-384 22-88 (214)
145 PF02955 GSH-S_ATP: Prokaryoti 59.8 24 0.00051 32.4 5.9 67 27-112 12-79 (173)
146 TIGR00674 dapA dihydrodipicoli 59.3 1.3E+02 0.0028 29.4 11.5 108 300-421 8-122 (285)
147 cd00954 NAL N-Acetylneuraminic 57.5 1.9E+02 0.004 28.4 12.3 110 300-422 10-126 (288)
148 COG5012 Predicted cobalamin bi 57.5 70 0.0015 30.6 8.7 106 280-419 120-225 (227)
149 cd00951 KDGDH 5-dehydro-4-deox 54.1 1.7E+02 0.0036 28.8 11.3 107 300-421 10-123 (289)
150 cd07021 Clp_protease_NfeD_like 54.0 42 0.00091 30.8 6.6 56 312-385 17-74 (178)
151 cd02067 B12-binding B12 bindin 52.5 1.3E+02 0.0029 24.9 9.0 98 285-414 19-116 (119)
152 PRK14188 bifunctional 5,10-met 51.8 1.4E+02 0.0031 29.7 10.4 97 302-413 67-200 (296)
153 PRK14194 bifunctional 5,10-met 50.8 1.6E+02 0.0036 29.4 10.6 98 302-414 68-202 (301)
154 PRK11778 putative inner membra 49.1 37 0.00079 34.4 5.8 42 331-382 124-167 (330)
155 COG0054 RibH Riboflavin syntha 47.9 2.1E+02 0.0046 25.7 12.0 111 284-421 33-149 (152)
156 COG2185 Sbm Methylmalonyl-CoA 47.2 34 0.00073 30.4 4.5 46 372-417 16-61 (143)
157 cd07020 Clp_protease_NfeD_1 No 46.8 84 0.0018 28.7 7.4 61 310-388 15-80 (187)
158 PF00885 DMRL_synthase: 6,7-di 45.5 1E+02 0.0022 27.3 7.4 112 284-420 24-139 (144)
159 COG0541 Ffh Signal recognition 45.0 1.8E+02 0.0038 30.8 10.0 63 353-422 119-181 (451)
160 COG1090 Predicted nucleoside-d 44.3 48 0.001 32.9 5.5 131 270-417 158-295 (297)
161 cd06288 PBP1_sucrose_transcrip 44.0 2.6E+02 0.0057 25.8 11.3 120 270-420 117-245 (269)
162 COG0299 PurN Folate-dependent 42.9 1.3E+02 0.0029 28.2 7.9 69 333-417 3-76 (200)
163 cd07013 S14_ClpP Caseinolytic 42.6 60 0.0013 29.1 5.6 59 309-384 13-73 (162)
164 PRK00286 xseA exodeoxyribonucl 42.3 1.7E+02 0.0036 30.6 9.7 120 269-417 135-260 (438)
165 KOG2862 Alanine-glyoxylate ami 39.2 74 0.0016 32.2 5.9 65 263-337 86-150 (385)
166 cd07015 Clp_protease_NfeD Nodu 38.0 1.1E+02 0.0024 27.9 6.7 44 328-384 28-76 (172)
167 COG1992 Uncharacterized conser 37.8 2.2E+02 0.0047 26.4 8.4 21 399-421 159-179 (181)
168 COG3693 XynA Beta-1,4-xylanase 37.6 2.2E+02 0.0048 28.9 9.0 99 297-402 157-256 (345)
169 cd06300 PBP1_ABC_sugar_binding 37.3 1.8E+02 0.0039 27.2 8.4 55 306-379 165-219 (272)
170 PRK00061 ribH 6,7-dimethyl-8-r 37.1 3.1E+02 0.0067 24.6 13.5 116 281-421 30-149 (154)
171 cd07016 S14_ClpP_1 Caseinolyti 37.0 1.3E+02 0.0028 26.5 6.9 64 308-389 15-78 (160)
172 TIGR00640 acid_CoA_mut_C methy 37.0 1.2E+02 0.0026 26.3 6.5 42 376-417 10-51 (132)
173 PF13433 Peripla_BP_5: Peripla 36.9 88 0.0019 32.2 6.4 68 281-362 23-92 (363)
174 cd02810 DHOD_DHPD_FMN Dihydroo 36.1 3.1E+02 0.0068 26.5 10.1 81 303-400 104-193 (289)
175 PF14397 ATPgrasp_ST: Sugar-tr 35.6 67 0.0015 31.7 5.2 50 10-66 29-87 (285)
176 PF00448 SRP54: SRP54-type pro 35.3 3.6E+02 0.0078 24.9 10.1 78 332-420 3-80 (196)
177 cd02070 corrinoid_protein_B12- 35.2 2.5E+02 0.0055 25.9 8.8 46 372-417 86-131 (201)
178 PRK02261 methylaspartate mutas 34.5 1.4E+02 0.0031 26.0 6.6 47 372-418 7-53 (137)
179 PF11379 DUF3182: Protein of u 33.7 1.2E+02 0.0027 30.8 6.6 79 31-122 116-195 (355)
180 PF03851 UvdE: UV-endonuclease 33.0 2.8E+02 0.0061 27.4 9.0 93 298-400 107-207 (275)
181 TIGR00736 nifR3_rel_arch TIM-b 31.5 4.7E+02 0.01 25.0 10.6 33 384-416 178-211 (231)
182 TIGR01501 MthylAspMutase methy 31.1 1.6E+02 0.0034 25.9 6.2 47 372-418 5-51 (134)
183 COG0552 FtsY Signal recognitio 31.0 4.2E+02 0.0092 27.0 9.9 78 332-422 141-220 (340)
184 cd02067 B12-binding B12 bindin 30.7 1.6E+02 0.0036 24.3 6.2 45 372-416 3-47 (119)
185 PRK15395 methyl-galactoside AB 30.1 4.3E+02 0.0093 26.0 10.1 87 306-420 203-292 (330)
186 cd06311 PBP1_ABC_sugar_binding 29.7 2.3E+02 0.005 26.5 7.8 62 309-389 168-229 (274)
187 PRK10949 protease 4; Provision 29.6 1.2E+02 0.0025 33.6 6.2 52 309-375 96-151 (618)
188 KOG0370 Multifunctional pyrimi 29.5 61 0.0013 37.3 4.0 84 13-119 1039-1123(1435)
189 PRK09426 methylmalonyl-CoA mut 29.5 4.8E+02 0.01 29.4 11.1 95 303-421 614-709 (714)
190 cd02072 Glm_B12_BD B12 binding 29.4 1.8E+02 0.0039 25.3 6.3 46 373-418 4-49 (128)
191 COG0436 Aspartate/tyrosine/aro 29.4 1.7E+02 0.0037 30.2 7.2 45 305-361 148-195 (393)
192 TIGR00705 SppA_67K signal pept 29.1 2E+02 0.0042 31.6 7.9 55 308-377 76-134 (584)
193 cd02070 corrinoid_protein_B12- 28.8 3.6E+02 0.0078 24.8 8.7 102 280-415 98-199 (201)
194 TIGR02370 pyl_corrinoid methyl 28.7 3.7E+02 0.0081 24.7 8.8 46 372-417 88-133 (197)
195 COG4231 Indolepyruvate ferredo 28.5 5.1E+02 0.011 28.7 10.6 33 259-292 235-269 (640)
196 COG3962 Acetolactate synthase 28.3 73 0.0016 33.9 4.1 33 368-400 229-261 (617)
197 PRK13789 phosphoribosylamine-- 27.1 4.2E+02 0.0091 27.6 9.7 22 393-414 117-138 (426)
198 PRK00414 gmhA phosphoheptose i 26.8 5E+02 0.011 23.8 9.5 17 267-283 42-58 (192)
199 cd04741 DHOD_1A_like Dihydroor 26.7 5.2E+02 0.011 25.4 9.9 61 302-378 96-166 (294)
200 cd02071 MM_CoA_mut_B12_BD meth 26.6 2.1E+02 0.0045 24.1 6.2 46 372-417 3-48 (122)
201 COG2012 RPB5 DNA-directed RNA 26.5 88 0.0019 24.9 3.3 27 6-37 21-47 (80)
202 PF13407 Peripla_BP_4: Peripla 25.3 5.4E+02 0.012 23.7 10.0 90 305-421 162-251 (257)
203 KOG1254 ATP-citrate lyase [Ene 25.3 1.2E+02 0.0025 32.5 4.9 94 268-379 158-252 (600)
204 cd02069 methionine_synthase_B1 24.9 4.9E+02 0.011 24.4 8.9 47 372-418 92-138 (213)
205 TIGR02049 gshA_ferroox glutama 24.8 1.6E+02 0.0036 30.3 5.8 60 53-118 257-317 (403)
206 PRK05198 2-dehydro-3-deoxyphos 24.8 3.5E+02 0.0076 26.6 7.9 25 376-400 61-85 (264)
207 cd07017 S14_ClpP_2 Caseinolyti 24.7 3.5E+02 0.0077 24.2 7.7 75 300-388 10-86 (171)
208 TIGR01101 V_ATP_synt_F vacuola 24.7 3.7E+02 0.008 22.9 7.2 60 299-378 34-93 (115)
209 PRK14179 bifunctional 5,10-met 24.3 7.1E+02 0.015 24.7 10.5 101 299-414 64-201 (284)
210 PRK07535 methyltetrahydrofolat 24.0 6.7E+02 0.015 24.3 10.5 13 299-311 39-51 (261)
211 TIGR01036 pyrD_sub2 dihydrooro 23.8 7.3E+02 0.016 25.0 10.5 79 309-397 152-238 (335)
212 PF05770 Ins134_P3_kin: Inosit 23.7 1.2E+02 0.0027 30.3 4.8 70 24-115 112-183 (307)
213 PRK12457 2-dehydro-3-deoxyphos 23.6 3.9E+02 0.0084 26.5 8.0 25 376-400 67-91 (281)
214 PF10281 Ish1: Putative stress 23.6 1.1E+02 0.0025 20.3 3.1 32 5-47 3-34 (38)
215 PRK10867 signal recognition pa 23.3 6.9E+02 0.015 26.3 10.4 79 333-421 103-181 (433)
216 PF14403 CP_ATPgrasp_2: Circul 23.1 3.1E+02 0.0068 29.0 7.8 51 53-119 339-391 (445)
217 TIGR01362 KDO8P_synth 3-deoxy- 22.7 4.3E+02 0.0092 25.9 8.0 25 376-400 53-77 (258)
218 PRK09570 rpoH DNA-directed RNA 22.7 1.2E+02 0.0026 24.2 3.5 27 6-37 18-44 (79)
219 TIGR00238 KamA family protein. 22.5 8E+02 0.017 24.6 10.8 96 310-421 144-248 (331)
220 PLN02331 phosphoribosylglycina 22.4 3.4E+02 0.0074 25.5 7.2 44 352-404 14-57 (207)
221 PF00574 CLP_protease: Clp pro 22.4 2.8E+02 0.006 24.9 6.5 77 300-389 17-94 (182)
222 PLN02495 oxidoreductase, actin 22.3 5.9E+02 0.013 26.4 9.5 61 304-379 120-192 (385)
223 TIGR00959 ffh signal recogniti 22.3 8E+02 0.017 25.8 10.6 37 384-420 143-179 (428)
224 cd01575 PBP1_GntR Ligand-bindi 21.9 6.2E+02 0.013 23.2 9.5 86 305-420 156-244 (268)
225 PRK10727 DNA-binding transcrip 21.5 7.6E+02 0.017 24.0 10.7 90 270-379 177-275 (343)
226 TIGR02990 ectoine_eutA ectoine 21.2 2.6E+02 0.0056 26.9 6.3 66 306-399 163-228 (239)
227 TIGR00315 cdhB CO dehydrogenas 21.1 1.3E+02 0.0028 27.3 3.9 33 369-401 28-60 (162)
228 TIGR01425 SRP54_euk signal rec 20.8 7.7E+02 0.017 26.0 10.1 78 333-421 103-180 (429)
229 KOG3432 Vacuolar H+-ATPase V1 20.5 2.6E+02 0.0056 23.8 5.2 37 298-338 35-71 (121)
230 COG3473 Maleate cis-trans isom 20.5 3.1E+02 0.0067 26.2 6.3 64 302-390 158-221 (238)
231 cd06301 PBP1_rhizopine_binding 20.3 6.9E+02 0.015 23.1 9.4 89 306-419 163-251 (272)
232 PF07287 DUF1446: Protein of u 20.3 3.6E+02 0.0079 27.7 7.4 31 369-399 71-101 (362)
233 cd06283 PBP1_RegR_EndR_KdgR_li 20.2 6.7E+02 0.015 22.9 11.1 117 270-419 117-244 (267)
No 1
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=5.5e-104 Score=797.29 Aligned_cols=418 Identities=84% Similarity=1.313 Sum_probs=389.0
Q ss_pred CCCCCCCHHHHHHHHHHchhCCCCCccCCCceEEe-cCCCHHHHHHhhcc---cCCCcEEEeeccccCcccccCeeEEeC
Q 014512 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVI-ESTNFDELAQKEPW---LTSCKLVVKPDMLFGKRGKSGLVALNL 76 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~-~~~~~~ea~~~a~~---lg~~pvVvKaqv~~g~Rgk~GgV~l~~ 76 (423)
||+++|||||||+||++||+|.+||||| .+.++ ++ ++|+.+++++ |++.++|||||+++|||||+|||+++.
T Consensus 1 ~~~~~l~EyqaK~ll~~~~~~~~gipvP--~~~v~~~~--~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~ 76 (423)
T PLN02235 1 MARKKIREYDSKRLLKEHLKRLAGIDLP--IRSAQVTE--STDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNL 76 (423)
T ss_pred CCcccccHHHHHHHHHHhhcccCCCCCC--CCeeccCC--HHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeC
Confidence 9999999999999999999999999999 66776 55 5788777655 886567999999999999999999999
Q ss_pred CHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeeecCCCcccccccceeEEEecCCcc
Q 014512 77 DLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGA 156 (423)
Q Consensus 77 s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s~~GGv~iE~~~d~~~~lpi~~~~ 156 (423)
|++|+++++++|+|+++.++|+.+++++||||+++++.+|+|+|++.||..+.+++|.+||||||+.|+++++++|||..
T Consensus 77 s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~ 156 (423)
T PLN02235 77 DLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEA 156 (423)
T ss_pred CHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCC
Confidence 99999999999999998776777799999999999999999999999999878999999999999999999999999999
Q ss_pred CCCHhhHHHHHhcCChhhHHHHHHHHHHHHHHhhccCccEeeeeceeecCCceEEEeeeeeeccchhcccccccccccCC
Q 014512 157 CLASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFP 236 (423)
Q Consensus 157 ~l~~~~a~~l~~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~g~~~alDaki~idd~A~~r~~~~~~~~~~~ 236 (423)
+++++++++++.+++....+++.+++.+||++|.++|++++|||||++.||+++|+|+|+.+||||.|||++.|..++||
T Consensus 157 gl~~~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~ 236 (423)
T PLN02235 157 PLTSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFP 236 (423)
T ss_pred CCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhccc
Confidence 99999999999999888889999999999999999999999999999988899999999999999999999889999999
Q ss_pred CCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHH
Q 014512 237 LPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQY 316 (423)
Q Consensus 237 ~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a 316 (423)
.+|+|+.+|+|.++.++|+...++++|++|+|+||||||+||||++|+|||++..+|.+|+||||+|+||+|+.++++++
T Consensus 237 ~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a 316 (423)
T PLN02235 237 LPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY 316 (423)
T ss_pred ccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHH
Confidence 99999999999988888877777766666999999999999999999999999997544999999999999999999999
Q ss_pred HHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcC
Q 014512 317 ARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIG 396 (423)
Q Consensus 317 ~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~G 396 (423)
++++|+++++||+++++||||||||+|||+||+||+||++|++++..++++.++|||||++|||+++|+++|+++++++|
T Consensus 317 ~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~g 396 (423)
T PLN02235 317 ARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIG 396 (423)
T ss_pred HHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcC
Confidence 99999888889999999999999999999999999999999999864444567999999999999999999999999999
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 397 LPIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 397 ip~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+|+++|++++||++||+++|+..-++
T Consensus 397 l~i~~~~~~~~m~~a~~~av~~~~~~ 422 (423)
T PLN02235 397 VPIEVYGPEATMTGICKQAIDYITAA 422 (423)
T ss_pred CcEEEeCCCCCHHHHHHHHHhhhccC
Confidence 99999999999999999999855444
No 2
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.6e-95 Score=716.59 Aligned_cols=374 Identities=27% Similarity=0.395 Sum_probs=340.8
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
|+|||||+|+||++| ||||| +++++++ ++|+.+++.++|+.|+|||+|+++|||||+|||+++.|++|+.+
T Consensus 1 M~lhEYqaKelf~~~-----GiPvp--~g~v~~s--~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~ 71 (387)
T COG0045 1 MNLHEYQAKELFAKY-----GIPVP--PGYVATS--PEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKE 71 (387)
T ss_pred CcHHHHHHHHHHHHc-----CCCCC--CceeeeC--HHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHH
Confidence 799999999999999 99999 7899988 59999999999878999999999999999999999999999999
Q ss_pred HHHHHhcccchhccCC-cceeEEEEEeecCC-CceEEEEEEEeCC--CCeeeeecCCCcccccc----cceeEEEecCCc
Q 014512 84 FVKECLGKEMEMSECK-GPITTFIIEPFIPH-NEEFYLNIVSERL--GCSVSFSECGGIEIEEN----WDKVKTIFVPTG 155 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~-~~v~~vlVe~~~~~-~~E~ylgi~~D~~--~p~il~s~~GGv~iE~~----~d~~~~lpi~~~ 155 (423)
++++|+|++.+ +++. ..++.+|||+++++ .+|||+|+..||. .|++|+|.+||||||+. |+++++.++||.
T Consensus 72 ~a~~~lg~~~q-~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~ 150 (387)
T COG0045 72 AAEEILGKNYQ-TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPL 150 (387)
T ss_pred HHHHHhCcccc-cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCc
Confidence 99999997743 3333 57999999999995 4599999999998 48899999999999985 578999999999
Q ss_pred cCCCHhhHHHHHh--cCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-c-CCceEEEeeeeeeccchhcccccccc
Q 014512 156 ACLASETSAPLVA--TLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-V-DRKPYPLDMRGELDDTAAFKNFKKWG 231 (423)
Q Consensus 156 ~~l~~~~a~~l~~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~-~g~~~alDaki~idd~A~~r~~~~~~ 231 (423)
.+++++++|+++. ++++...+++.+++.+||++|.++|++++|||||++ . +|+++|||+|+.+||||+||||++ .
T Consensus 151 ~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~-~ 229 (387)
T COG0045 151 TGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDL-A 229 (387)
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcch-h
Confidence 9999999999997 567788999999999999999999999999999999 6 448999999999999999999984 3
Q ss_pred cccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHH
Q 014512 232 NIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEG 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~ 311 (423)
++ ++.++++. +|..+.+++|+||+|+||||||+||+|++|+|||+++.+ ||+||||||+||+|+.+
T Consensus 230 ~~-------~d~~~ed~-----~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~--Gg~PANFLDvGGgA~~e 295 (387)
T COG0045 230 EL-------RDESEEDP-----REAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLY--GGKPANFLDVGGGATAE 295 (387)
T ss_pred hh-------hcccccCh-----hHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHc--CCCCcceeecCCCCCHH
Confidence 34 23333322 466788899999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhh
Q 014512 312 EVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~ 391 (423)
+++++++++++ ||++++|||||||||++|+.|| +||++|+++.+ .++|+||||.|||+++|+++|+
T Consensus 296 ~v~~a~~~il~----d~~vk~IfVNIfGGI~rcD~vA---~GIi~Al~e~~-----~~vPlVVRL~GtN~e~Gk~iL~-- 361 (387)
T COG0045 296 RVKEAFKLILS----DPNVKAIFVNIFGGITRCDEVA---EGIIAALKEVG-----VNVPLVVRLEGTNVEEGKRILA-- 361 (387)
T ss_pred HHHHHHHHHhc----CCCccEEEEEEccCcCccHHHH---HHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHH--
Confidence 99999999998 9999999999999999999988 99999999986 5899999999999999999999
Q ss_pred hhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 392 AEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 392 ~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++|+++.+| ++|++|++++|++++.
T Consensus 362 --esg~~i~~~---~~l~~aa~k~v~~~~~ 386 (387)
T COG0045 362 --ESGLNIIAA---DDLDEAAEKAVELAKG 386 (387)
T ss_pred --HcCCceEec---ccHHHHHHHHHHHhhc
Confidence 799877755 8999999999999875
No 3
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=2.7e-88 Score=691.48 Aligned_cols=375 Identities=23% Similarity=0.351 Sum_probs=338.5
Q ss_pred CCCCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccC--CCcEEEeeccccCccccc-------Cee
Q 014512 2 ARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLT--SCKLVVKPDMLFGKRGKS-------GLV 72 (423)
Q Consensus 2 ~~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg--~~pvVvKaqv~~g~Rgk~-------GgV 72 (423)
-+|+|+|||+|+||++| ||||| ++.++++ ++|+.+++++++ ++|+|+|+|+++|||||+ |||
T Consensus 26 ~~m~l~EyqaK~LL~~~-----GIpvp--~~~va~t--~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV 96 (422)
T PLN00124 26 RRLNIHEYQGAELMSKY-----GVNVP--KGAAASS--LDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGV 96 (422)
T ss_pred cccCCCHHHHHHHHHHc-----CCCCC--CceeeCC--HHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeE
Confidence 46999999999999999 99999 7788887 699999999995 579999999999999976 999
Q ss_pred EEeCCHHHHHHHHHHHhcccchh--ccCC-cceeEEEEEeecCCCceEEEEEEEeCC--CCeeeeecCCCcccc----cc
Q 014512 73 ALNLDLAQAATFVKECLGKEMEM--SECK-GPITTFIIEPFIPHNEEFYLNIVSERL--GCSVSFSECGGIEIE----EN 143 (423)
Q Consensus 73 ~l~~s~eea~~~a~~~l~~~~~~--~g~~-~~v~~vlVe~~~~~~~E~ylgi~~D~~--~p~il~s~~GGv~iE----~~ 143 (423)
+++.+ +|+.+++++|+++++.+ +++. ..+++++|+|++.+++|+|+|++.||. +|++++|++|||+|| ..
T Consensus 97 ~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~ 175 (422)
T PLN00124 97 HIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKF 175 (422)
T ss_pred EECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhC
Confidence 99966 99999999999997643 3443 478999988888899999999999995 799988899999999 46
Q ss_pred cceeEEEecCCccCCCHhhHHHHHhcCC--hhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeecc
Q 014512 144 WDKVKTIFVPTGACLASETSAPLVATLP--LEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDD 220 (423)
Q Consensus 144 ~d~~~~lpi~~~~~l~~~~a~~l~~g~~--~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd 220 (423)
+|.+.++++|+..+++++++++++.+++ +.+.+++++++.+||++|.++|++++|||||++ .+|+++|+|||+.+||
T Consensus 176 pd~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~Dd 255 (422)
T PLN00124 176 PEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDD 255 (422)
T ss_pred chheeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCC
Confidence 7889999999999999999999999765 478999999999999999999999999999999 8888999999999999
Q ss_pred chhcccccccccccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCc
Q 014512 221 TAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300 (423)
Q Consensus 221 ~A~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN 300 (423)
||.|||+++|. ++++ ++.+|. |.+++..+++||+|+|+||||+||||++|+|||+|..+ ||+|||
T Consensus 256 nA~~R~~~~~~-~~~~----~~~~~~--------E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~--Gg~pAN 320 (422)
T PLN00124 256 NAAFRQKEIFA-LRDT----SQEDPR--------EVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLH--GGSPAN 320 (422)
T ss_pred chhhcChhhhh-ccCc----ccCChh--------HHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHc--CCCcce
Confidence 99999999774 4322 233333 44678889999999999999999999999999999995 899999
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCC
Q 014512 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPN 380 (423)
Q Consensus 301 ~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~ 380 (423)
|+|+||+|+.++++++++++++ ||++++|||||||||++|+.|| +||++|+++.. .++|||+|+.|||
T Consensus 321 FlD~GG~a~~~~v~~a~~ii~~----d~~vk~iliNIfGGI~~cd~iA---~gii~a~~~~~-----~~~pivvRl~Gtn 388 (422)
T PLN00124 321 FLDVGGNASEQQVVEAFKILTS----DDKVKAILVNIFGGIMKCDVIA---SGIVNAAKQVG-----LKVPLVVRLEGTN 388 (422)
T ss_pred eeecCCCCCHHHHHHHHHHHhc----CCCCcEEEEEecCCccchHHHH---HHHHHHHHhcC-----CCCcEEEEcCCCC
Confidence 9999999999999999999988 9999999999999999999998 99999999875 5799999999999
Q ss_pred HHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 381 YQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+++|+++|+ ++|+++++| +|+++|++++|+++.
T Consensus 389 ~~~g~~~l~----~~~~~~~~~---~~l~~A~~~~v~~~~ 421 (422)
T PLN00124 389 VDQGKRILK----ESGMTLITA---EDLDDAAEKAVKALA 421 (422)
T ss_pred HHHHHHHHH----hCCCCeEEc---CCHHHHHHHHHHHhc
Confidence 999999999 789888755 899999999998864
No 4
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=1.9e-82 Score=647.08 Aligned_cols=376 Identities=26% Similarity=0.359 Sum_probs=339.9
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
|+|+|||+|+||++| ||||| ++.++++ ++|+.++++++|+.|+|||+|++++||||+|||+++.|++|+.+
T Consensus 1 m~l~E~eak~lL~~y-----GIpvp--~~~~~~~--~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~ 71 (392)
T PRK14046 1 MDIHEYQAKELLASF-----GVAVP--RGALAYS--PEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRD 71 (392)
T ss_pred CCCcHHHHHHHHHHc-----CCCCC--CceEECC--HHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHH
Confidence 899999999999999 99999 7888887 69999999999844679999999999999999999999999999
Q ss_pred HHHHHhcccchh--ccCC-cceeEEEEEeecCCCceEEEEEEEeCC-CCeeee-ecCCCcccccc----cceeEEEecCC
Q 014512 84 FVKECLGKEMEM--SECK-GPITTFIIEPFIPHNEEFYLNIVSERL-GCSVSF-SECGGIEIEEN----WDKVKTIFVPT 154 (423)
Q Consensus 84 ~a~~~l~~~~~~--~g~~-~~v~~vlVe~~~~~~~E~ylgi~~D~~-~p~il~-s~~GGv~iE~~----~d~~~~lpi~~ 154 (423)
++++|+++.+.+ +++. ..+++|+||+|+++++|+|+|+++||. +|++++ |+.||++||++ |+++++++|++
T Consensus 72 a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~ 151 (392)
T PRK14046 72 AAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEP 151 (392)
T ss_pred HHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcCC
Confidence 999999987643 3444 479999999999999999999999998 676555 67999999985 78999999999
Q ss_pred ccCCCHhhHHHHHh--cCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhcccccccc
Q 014512 155 GACLASETSAPLVA--TLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWG 231 (423)
Q Consensus 155 ~~~l~~~~a~~l~~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~ 231 (423)
..+++++++++++. |+++...+++.++|.+||++|.++|++++|||||++ .+|+++|+|+|+.+||||.|||+++|
T Consensus 152 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~~- 230 (392)
T PRK14046 152 AVGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIA- 230 (392)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhHH-
Confidence 99999999999987 456688899999999999999999999999999999 89999999999999999999999865
Q ss_pred cccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHH
Q 014512 232 NIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEG 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~ 311 (423)
.++++ .+.+|+| .++++++++||+|+|+||||+||+|++|+|||+|..+ ||+|+||+|+||+++++
T Consensus 231 ~~~~~----~~~~~~e--------~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~--gg~paNPlDlgg~a~~e 296 (392)
T PRK14046 231 EMRDP----SQEDPRE--------AQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLA--GGEPANFLDVGGGASPE 296 (392)
T ss_pred hhcCc----ccCChhH--------HHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhc--CCCCcCCEEecCCCCHH
Confidence 45443 3345554 4567889999999999999999999999999999994 89999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhh
Q 014512 312 EVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~ 391 (423)
.|.++++++++ ||+++++|+|++||+++|+++| ++|+++.++.. .++|+++|+.|++.++++++|+
T Consensus 297 ~~~~aL~~ll~----Dp~VdaVlv~i~ggi~~~~~vA---~~Ii~a~~~~~-----~~kPvvv~l~G~~~e~~~~iL~-- 362 (392)
T PRK14046 297 RVAKAFRLVLS----DRNVKAILVNIFAGINRCDWVA---EGVVQAAREVG-----IDVPLVVRLAGTNVEEGRKILA-- 362 (392)
T ss_pred HHHHHHHHHHc----CCCCCEEEEEcCCCCCCHHHHH---HHHHHHHHhcC-----CCCcEEEEcCCCCHHHHHHHHH--
Confidence 99999999998 9999999999999999998888 99999988742 3689999999999999999999
Q ss_pred hhhcCCceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 392 AEEIGLPIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 392 ~~~~Gip~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++|+|+|. .++|++|++++|++++++
T Consensus 363 --~~Gipvf~---~~~~~~a~~~~v~~~~~~ 388 (392)
T PRK14046 363 --ESGLPIIT---ADTLAEAAEKAVEAWKGA 388 (392)
T ss_pred --HcCCCeee---cCCHHHHHHHHHHHHhhh
Confidence 79999995 489999999999999875
No 5
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=3.2e-75 Score=595.30 Aligned_cols=371 Identities=25% Similarity=0.368 Sum_probs=329.6
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
|+|+|||+|+||++| |||+| ++.++++ .+|+.+++.++|.+|+|||+|+++||||+.|||+++.|++|+.+
T Consensus 1 m~L~E~~aK~ll~~~-----GIpvp--~~~~~~~--~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 1 MNLHEYQAKQIFAKY-----GIPVP--RGYVATS--VEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARA 71 (386)
T ss_pred CCCcHHHHHHHHHHc-----CCCCC--CceeeCC--HHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHH
Confidence 789999999999999 99999 7788876 68999999999757999999999999999999999999999999
Q ss_pred HHHHHhcccchhc--c-CCcceeEEEEEeecCCCceEEEEEEEeCC--CCeeeeecCCCccccccc----ceeEEEecCC
Q 014512 84 FVKECLGKEMEMS--E-CKGPITTFIIEPFIPHNEEFYLNIVSERL--GCSVSFSECGGIEIEENW----DKVKTIFVPT 154 (423)
Q Consensus 84 ~a~~~l~~~~~~~--g-~~~~v~~vlVe~~~~~~~E~ylgi~~D~~--~p~il~s~~GGv~iE~~~----d~~~~lpi~~ 154 (423)
++++++++.+.+. + +...+++|+||+|+++++|+|+|++.||. +|+|+||.+||++||+++ +++.++.++|
T Consensus 72 a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p 151 (386)
T TIGR01016 72 AAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDP 151 (386)
T ss_pred HHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCC
Confidence 9999998665431 2 23567899999999999999999999985 699999999999999864 5677778889
Q ss_pred ccCCCHhhHHHHHhc--CChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhcccccccc
Q 014512 155 GACLASETSAPLVAT--LPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWG 231 (423)
Q Consensus 155 ~~~l~~~~a~~l~~g--~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~ 231 (423)
..++.+++++.+... ++..+.+++.+++.+||++|.++|++++|||||++ .+|+++|+|+|+.+||||.|||++ |.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~-~~ 230 (386)
T TIGR01016 152 LTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPD-LE 230 (386)
T ss_pred CcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHH-HH
Confidence 889999999998874 55689999999999999999999999999999999 788899999999999999999998 43
Q ss_pred cccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHH
Q 014512 232 NIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEG 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~ 311 (423)
.++++ ++.++. |..+++.+++||+|+||||||+||||++|+|+|++..+ |++|+||+|+||+++++
T Consensus 231 ~~~~~----~~~~~~--------e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~--g~~~aNplDlgg~a~~~ 296 (386)
T TIGR01016 231 EMRDY----SQEDPR--------EVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLY--GGEPANFLDVGGGASAE 296 (386)
T ss_pred HhhcC----CcCChh--------hhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHc--CCCCCCcEEecCCCCHH
Confidence 34222 222332 45678888999999999999999999999999999994 89999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhh
Q 014512 312 EVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~ 391 (423)
.|.++++++++ ||+++++|+|++||+++|+.+| ++|+++++++. .++|+++|+.|++.++++++|+
T Consensus 297 ~~~~al~~l~~----dp~vd~ilv~i~gg~~~~~~va---~~i~~a~~~~~-----~~kPvvv~~~g~~~~~~~~~L~-- 362 (386)
T TIGR01016 297 RVREALKLVLS----DKSVKVVFINIFGGITRCDLVA---KGLVEALKEVG-----VNVPVVVRLEGTNVEEGKKILA-- 362 (386)
T ss_pred HHHHHHHHHHc----CCCCCEEEEECCCCCCCHHHHH---HHHHHHHHhcC-----CCCcEEEEeCCccHHHHHHHHH--
Confidence 99999999998 9999999999999999998888 99999988863 3589999999999999999999
Q ss_pred hhhcC--CceeecCCCCCHHHHHHHHHHHH
Q 014512 392 AEEIG--LPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 392 ~~~~G--ip~~~~g~~~t~~~av~~~v~~~ 419 (423)
++| +|+| ++|++|++++|+++
T Consensus 363 --~~G~~ip~~-----~~~~~Av~~~~~~~ 385 (386)
T TIGR01016 363 --ESGLNIIFA-----TSMEEAAEKAVEAA 385 (386)
T ss_pred --HcCCCcccc-----CCHHHHHHHHHHhh
Confidence 789 7776 89999999999875
No 6
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-75 Score=547.99 Aligned_cols=372 Identities=23% Similarity=0.349 Sum_probs=336.6
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCccccc-------CeeEEeC
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKS-------GLVALNL 76 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~-------GgV~l~~ 76 (423)
.+|.|||+|+||++| |+.|. +..++++ ..|+.+++..++...+|+|+|+++|||||. |||.+..
T Consensus 20 LNLqEfQSK~~l~k~-----Gv~vQ--~F~Va~n--~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk 90 (412)
T KOG1447|consen 20 LNLQEFQSKEILSKN-----GVRVQ--RFFVADN--AKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITK 90 (412)
T ss_pred ccHHHhhhHHHHHhc-----CeeEE--EEEEecC--cHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEec
Confidence 458899999999999 98887 8888877 478888888888778999999999999994 9999999
Q ss_pred CHHHHHHHHHHHhcccchh--ccCCc-ceeEEEEEeecCCCceEEEEEEEeCC--CCeeeeecCCCccccc----cccee
Q 014512 77 DLAQAATFVKECLGKEMEM--SECKG-PITTFIIEPFIPHNEEFYLNIVSERL--GCSVSFSECGGIEIEE----NWDKV 147 (423)
Q Consensus 77 s~eea~~~a~~~l~~~~~~--~g~~~-~v~~vlVe~~~~~~~E~ylgi~~D~~--~p~il~s~~GGv~iE~----~~d~~ 147 (423)
++..+-+.+++|+|..+.| +...+ .+++++|.+.+++.+|-|+++.+||. ||+++.|++||||||. .|+.+
T Consensus 91 ~k~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~I 170 (412)
T KOG1447|consen 91 DKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELI 170 (412)
T ss_pred CHhHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhh
Confidence 9999999999999988876 22233 68999999999999999999999997 7999999999999997 57889
Q ss_pred EEEecCCccCCCHhhHHHHHhc--CChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhc
Q 014512 148 KTIFVPTGACLASETSAPLVAT--LPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAF 224 (423)
Q Consensus 148 ~~lpi~~~~~l~~~~a~~l~~g--~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~ 224 (423)
++.|||...++.+.++.++... |.+....+.++-|.+||.+|...|++.+|||||.. .+|+++|+|||+.+||||.|
T Consensus 171 fk~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~f 250 (412)
T KOG1447|consen 171 FKEPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEF 250 (412)
T ss_pred ccccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhh
Confidence 9999999999999999999885 44567888999999999999999999999999999 89999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeec
Q 014512 225 KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEY 304 (423)
Q Consensus 225 r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~ 304 (423)
||+|+|+ +... .+.+|. |.++++++++||-+||+|+|++||+|++|+|||++..+ ||+||||||+
T Consensus 251 RQKdIFa-md~~----eE~dPr--------EveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLn--GGePANFLDv 315 (412)
T KOG1447|consen 251 RQKDIFA-MDDK----EENDPR--------EVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLN--GGEPANFLDV 315 (412)
T ss_pred hhcceee-cccc----cccCch--------hhhhhhcCcceeeccCceEEEEccchhhhheeeeEEec--CCCCcceeec
Confidence 9999885 4221 233444 55789999999999999999999999999999999985 8999999999
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
||+...+++++|++++.+ ||.+++||||+||||.||..+| .||+.|.++.. .++|+|||+.|||++++
T Consensus 316 GGgV~EdqV~~Af~ilTa----DPkVk~iLvNiFGGIVNCAtIA---NGiv~A~~kl~-----LnVPlVVRLEGTNV~~A 383 (412)
T KOG1447|consen 316 GGGVKEDQVYQAFKILTA----DPKVKAILVNIFGGIVNCATIA---NGIVKACRKLE-----LNVPLVVRLEGTNVQEA 383 (412)
T ss_pred cCcccHHHHHHHhhhhcc----CCceeEEEEehhcceehhHhHh---hHHHHHHHhhc-----CCCcEEEEEcCCCHHHH
Confidence 999999999999998876 9999999999999999999998 99999999985 68999999999999999
Q ss_pred HHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 385 LAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 385 ~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
++||+ ++|+|+. +..++++|+.+||..
T Consensus 384 ~~Ilk----~SGLpI~---tA~dLddAA~KAVas 410 (412)
T KOG1447|consen 384 QKILK----KSGLPIT---TAIDLDDAAKKAVAS 410 (412)
T ss_pred HHHHH----hcCCcee---eccchHHHHHHHhhc
Confidence 99998 8999998 458999999999864
No 7
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=4.9e-70 Score=557.44 Aligned_cols=372 Identities=25% Similarity=0.360 Sum_probs=326.6
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
|+|+||++|++|++| |||+| ++.++++ .+|+.+++.+++++|+|+|+|++.+||||+|||+++.|++++.+
T Consensus 1 m~l~e~~ak~lL~~~-----gIpvp--~~~~~~~--~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~ 71 (388)
T PRK00696 1 MNLHEYQAKELFAKY-----GVPVP--RGIVATT--PEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEARE 71 (388)
T ss_pred CCCCHHHHHHHHHHc-----CCCCC--CCeeeCC--HHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHH
Confidence 789999999999999 99999 7788877 59999999999338999999998999999999999999999999
Q ss_pred HHHHHhcccchh--cc-CCcceeEEEEEeecCCCceEEEEEEEeCC-CCeee-eecCCCcccccccc----eeEEEecCC
Q 014512 84 FVKECLGKEMEM--SE-CKGPITTFIIEPFIPHNEEFYLNIVSERL-GCSVS-FSECGGIEIEENWD----KVKTIFVPT 154 (423)
Q Consensus 84 ~a~~~l~~~~~~--~g-~~~~v~~vlVe~~~~~~~E~ylgi~~D~~-~p~il-~s~~GGv~iE~~~d----~~~~lpi~~ 154 (423)
++++|+++.+.+ ++ +...+++|+||+|++++.|+|+|++.||. +|+++ +|++||++||.++| ++.++.++|
T Consensus 72 a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p 151 (388)
T PRK00696 72 FAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDP 151 (388)
T ss_pred HHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEEeCCCCcchhhhcccCcceeEEEEcCC
Confidence 999999875421 12 23468899999999999999999999998 67764 77899999999877 767778888
Q ss_pred ccCCCHhhHHHHHhc--CChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhcccccccc
Q 014512 155 GACLASETSAPLVAT--LPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWG 231 (423)
Q Consensus 155 ~~~l~~~~a~~l~~g--~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~ 231 (423)
..++++.++++++.. ++..+.+++.++|.+||++|.+++++++|||||++ .+|+++|+|+|+++||||.|||++ |.
T Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~-~~ 230 (388)
T PRK00696 152 LTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPD-LA 230 (388)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHh-HH
Confidence 888899999999875 66789999999999999999999999999999999 777799999999999999999997 65
Q ss_pred cccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHH
Q 014512 232 NIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEG 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~ 311 (423)
++... .+.++. |..++..+++||+|+||||||+||||++|+|+|+|..+ |++|+||+|++|+++++
T Consensus 231 ~~~~~----~~~~~~--------e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~--g~~~~NPvDl~g~~~~e 296 (388)
T PRK00696 231 ELRDL----SEEDPL--------EAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLY--GGEPANFLDVGGGATAE 296 (388)
T ss_pred hhcCC----CcCChh--------hhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHc--CCCcCCeEEecCCCCHH
Confidence 55332 122233 44567788999999999999999999999999999995 88999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhh
Q 014512 312 EVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~ 391 (423)
.|.++++++++ ||+++++++|+++++++|+.++ ++|+++.++.+ .++||++|+.|++.++++++|+
T Consensus 297 ~~~~aL~~l~~----d~~vd~vlv~~~~~~~~~~~va---~~i~~~~~~~~-----~~kPvv~~~~g~~~~~~~~~L~-- 362 (388)
T PRK00696 297 RVAEAFKIILS----DPNVKAILVNIFGGITRCDVIA---EGIIAAVKEVG-----VTVPLVVRLEGTNVELGKKILA-- 362 (388)
T ss_pred HHHHHHHHHhc----CCCCCEEEEEeCCCCCCHHHHH---HHHHHHHHhcC-----CCCcEEEEeCCCCHHHHHHHHH--
Confidence 99999999998 9999999999999999998888 99999877632 3689999998899999999999
Q ss_pred hhhcC--CceeecCCCCCHHHHHHHHHHHHH
Q 014512 392 AEEIG--LPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 392 ~~~~G--ip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++| +|+| +||++|++++.++++
T Consensus 363 --~~Gi~ip~f-----~~pe~A~~al~~~~~ 386 (388)
T PRK00696 363 --ESGLNIIAA-----DTLDDAAQKAVEAAK 386 (388)
T ss_pred --HCCCCceec-----CCHHHHHHHHHHHhc
Confidence 789 5565 899999999999875
No 8
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7e-72 Score=539.70 Aligned_cols=375 Identities=24% Similarity=0.329 Sum_probs=341.9
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCccccc-------CeeEEeC
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKS-------GLVALNL 76 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~-------GgV~l~~ 76 (423)
..+|||.+.+||.+| ||.+| .++++.+ +|||.+++++||+..+|||+|+++|||||. |||++..
T Consensus 23 L~~hey~~~~ll~~~-----Gv~vp--~g~vA~s--peEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf 93 (434)
T KOG2799|consen 23 LGIHEYRSAALLRKY-----GINVP--LGYVAKS--PEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVF 93 (434)
T ss_pred hhHHHHHHHHHHHHc-----CCCCC--CCcccCC--HHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEe
Confidence 458999999999999 99999 8899988 599999999999889999999999999995 8999999
Q ss_pred CHHHHHHHHHHHhcccchh--ccCCc-ceeEEEEEeecCCCceEEEEEEEeCC--CCeeeeecCCCccccc----cccee
Q 014512 77 DLAQAATFVKECLGKEMEM--SECKG-PITTFIIEPFIPHNEEFYLNIVSERL--GCSVSFSECGGIEIEE----NWDKV 147 (423)
Q Consensus 77 s~eea~~~a~~~l~~~~~~--~g~~~-~v~~vlVe~~~~~~~E~ylgi~~D~~--~p~il~s~~GGv~iE~----~~d~~ 147 (423)
+|+|+++.+.+|+|+.+.| +|+.+ .++.|+|++......|+|++++.||. +|+++.|.+||++||+ .||.+
T Consensus 94 ~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai 173 (434)
T KOG2799|consen 94 SPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAI 173 (434)
T ss_pred ChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccch
Confidence 9999999999999999887 67766 57999999999988999999999997 7999999999999997 58999
Q ss_pred EEEecCCccCCCHhhHHHHHhcC--ChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCC-ceEEEeeeeeeccchh
Q 014512 148 KTIFVPTGACLASETSAPLVATL--PLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDR-KPYPLDMRGELDDTAA 223 (423)
Q Consensus 148 ~~lpi~~~~~l~~~~a~~l~~g~--~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g-~~~alDaki~idd~A~ 223 (423)
.+.|++...+|++..+..+...+ ....++.+.+.+.+||++|...|++.+|||||+. .++ .++|.|+|+.+||||.
T Consensus 174 ~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~ 253 (434)
T KOG2799|consen 174 IKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAA 253 (434)
T ss_pred hcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHH
Confidence 99999999999999999998854 4578899999999999999999999999999998 545 7999999999999999
Q ss_pred cccccccccccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceee
Q 014512 224 FKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 303 (423)
Q Consensus 224 ~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD 303 (423)
|||..+|. + ++++++.. +|..++++++||+.++|+|+|++||+|++|+|||+++.+ ||.||||+|
T Consensus 254 fRq~~iF~-~-------rd~~QEd~-----re~~aak~~ln~igldG~igC~vngaglamaTmdiiklh--gg~panfld 318 (434)
T KOG2799|consen 254 FRQKKIFL-L-------RDLSQEDP-----REVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLH--GGTPANFLD 318 (434)
T ss_pred HHhhhhhh-c-------cchhhcCc-----hhhhHHHhccceeccCCccceeeccchhhhhheeeeeec--CCCCcceee
Confidence 99986552 3 45555543 577899999999999999999999999999999999995 899999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH
Q 014512 304 YSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR 383 (423)
Q Consensus 304 ~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~ 383 (423)
+||+|+.|++.++++++.+ ||.+.++|+||||||.+|+-+| .|++.+.|++. .++||++|+.|+++++
T Consensus 319 VGg~Atve~v~eaf~lits----d~kv~ailvnifGgi~rCDvia---~Giv~aar~l~-----~~ipiv~rlqgt~v~~ 386 (434)
T KOG2799|consen 319 VGGGATVEQVREAFSLITS----DKKVMAILVNIFGGIMRCDVIA---FGIVLAARELE-----LNIPIVVRLQGTRVEA 386 (434)
T ss_pred eCCCCcHHHHHHHHHHHhc----ChhHHHHHHHHhcCeeecccee---cchhhhhhhhh-----cCCCEEEEecCCchhh
Confidence 9999999999999998887 9999999999999999999888 99999999986 6899999999999999
Q ss_pred HHHHHHhhhhhcCCceeecCCCCCHHHHHHHH------HHHHHh
Q 014512 384 GLAKMRALAEEIGLPIEVYGPEATMTGICKQA------IECISA 421 (423)
Q Consensus 384 a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~------v~~~~~ 421 (423)
|+.++. ++|+.++.+ ++.++|++++ ++++++
T Consensus 387 ak~~i~----~sgmri~~~---deldeaa~~~v~~S~ivela~e 423 (434)
T KOG2799|consen 387 AKPIIN----TSGMRIRSF---DELDEAAKKAVGGSTIVELASE 423 (434)
T ss_pred hhhhHh----hcCceEEec---hhhhHHhhhhcccchHHHHhhh
Confidence 999999 799999854 8999999995 566554
No 9
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=1.2e-46 Score=350.76 Aligned_cols=191 Identities=30% Similarity=0.491 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
+|||||||+||++| ||||| ++.++++ ++|+.++++++|..++|||||+++|||||+|||+++.|++|+.++
T Consensus 1 ~l~EyqaK~ll~~~-----gi~vp--~g~~a~s--~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~ 71 (202)
T PF08442_consen 1 NLHEYQAKELLRKY-----GIPVP--RGVVATS--PEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEA 71 (202)
T ss_dssp BE-HHHHHHHHHCT-----T------SEEEESS--HHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHH
T ss_pred CchHHHHHHHHHHc-----CCCCC--CeeecCC--HHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHH
Confidence 58999999999999 99999 8899988 699999999999778899999999999999999999999999999
Q ss_pred HHHHhcccchh--ccCCc-ceeEEEEEeecCCCceEEEEEEEeCC--CCeeeeecCCCccccc----ccceeEEEecCCc
Q 014512 85 VKECLGKEMEM--SECKG-PITTFIIEPFIPHNEEFYLNIVSERL--GCSVSFSECGGIEIEE----NWDKVKTIFVPTG 155 (423)
Q Consensus 85 a~~~l~~~~~~--~g~~~-~v~~vlVe~~~~~~~E~ylgi~~D~~--~p~il~s~~GGv~iE~----~~d~~~~lpi~~~ 155 (423)
+++|+|+.+.| +|+.+ .+++||||+++++.+|||+|++.||. +|++++|.+|||+||+ .|+++.++|||+.
T Consensus 72 a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~ 151 (202)
T PF08442_consen 72 AKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPT 151 (202)
T ss_dssp HHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTT
T ss_pred HHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCC
Confidence 99999999885 56654 79999999999999999999999998 5899999999999998 6899999999999
Q ss_pred cCCCHhhHHHHHhc--CChhhHHHHHHHHHHHHHHhhccCccEeeeeceee
Q 014512 156 ACLASETSAPLVAT--LPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL 204 (423)
Q Consensus 156 ~~l~~~~a~~l~~g--~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v 204 (423)
.+++++++++++.. +++...+++.+++.+||++|.++|++++|||||++
T Consensus 152 ~g~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 152 EGLTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp TB--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 99999999999974 55678999999999999999999999999999985
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=3.3e-36 Score=284.69 Aligned_cols=204 Identities=18% Similarity=0.227 Sum_probs=140.3
Q ss_pred CCCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEe-CCHHH
Q 014512 3 RKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALN-LDLAQ 80 (423)
Q Consensus 3 ~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~-~s~ee 80 (423)
|..|+|+|+|+||+.| |||+| ++.++++ ++|+.+++.++| +|||+|...+ .-||+++|||+++ .|+++
T Consensus 7 ~~~L~e~e~~~lL~~y-----GI~~~--~~~~~~~--~~ea~~~a~~ig-~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~ 76 (222)
T PF13549_consen 7 RGWLTEAEAKELLAAY-----GIPVP--PTRLVTS--AEEAVAAAEEIG-FPVVLKIVSPDIAHKSDVGGVRLNLNSPEE 76 (222)
T ss_dssp --EE-HHHHHHHHHTT-----T--------EEESS--HHHHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHH
T ss_pred CCccCHHHHHHHHHHc-----CcCCC--CeeEeCC--HHHHHHHHHHhC-CCEEEEEecCCCCcCCCCCcEEECCCCHHH
Confidence 5679999999999999 99999 8899987 699999999998 8999998765 5699999999998 59999
Q ss_pred HHHHHHHHhcccchhccCCcceeEEEEEeecC-CCceEEEEEEEeCC-CCeeeeecCCCcccccccceeEEE-ecCCcc-
Q 014512 81 AATFVKECLGKEMEMSECKGPITTFIIEPFIP-HNEEFYLNIVSERL-GCSVSFSECGGIEIEENWDKVKTI-FVPTGA- 156 (423)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~-~~~E~ylgi~~D~~-~p~il~s~~GGv~iE~~~d~~~~l-pi~~~~- 156 (423)
+++++++|..+... +.|...+.+|+||+|++ .+.|+++|+..||. ||+|+|| .||+.+|.++|..+++ |++..+
T Consensus 77 v~~a~~~l~~~~~~-~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G-~GG~~vE~~~D~~~~l~Pl~~~~a 154 (222)
T PF13549_consen 77 VREAFERLRERVAA-HHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFG-LGGIFVELLKDVAFRLPPLSEADA 154 (222)
T ss_dssp HHHHHHHHHHHHHH-H-TT----EEEEEE------EEEEEEEEEETTTEEEEEEE-E-STTHHHH---EEEESS--HHHH
T ss_pred HHHHHHHHHHHHHH-hCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEc-CCCceeeeecceEEeeCCCCHHHH
Confidence 99999999876542 34556789999999999 89999999999999 7999998 9999999999999888 443321
Q ss_pred --CCCHhhHHHHHhcCCh---hhHHHHHHHHHHHHHHhhcc-CccEeeeeceeecCCceEEEeeeeee
Q 014512 157 --CLASETSAPLVATLPL---EIRGEIQEFIKSVFTLFQDL-DFTFLEMNPFTLVDRKPYPLDMRGEL 218 (423)
Q Consensus 157 --~l~~~~a~~l~~g~~~---~~~~~l~~~l~~L~~l~~~~-d~~~lEINPL~v~~g~~~alDaki~i 218 (423)
++.+.++.+++.|+++ .|+++++++|.+||+++.++ ++.++|||||++..++++|+|++|++
T Consensus 155 ~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g~~avDa~i~l 222 (222)
T PF13549_consen 155 REMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDGAVAVDARIRL 222 (222)
T ss_dssp HHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS-EEE--EEEEE
T ss_pred HHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCceEEEEEEEEC
Confidence 2233333334455544 79999999999999999987 68999999999933449999999975
No 11
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.95 E-value=2.4e-29 Score=252.12 Aligned_cols=412 Identities=36% Similarity=0.452 Sum_probs=333.1
Q ss_pred CCCCCCHHHHHHHHHHchhC---CCCCccC-------------------CCceEEe-cCCCHHHHHH-----hhcccCCC
Q 014512 2 ARKKIREYDSKRLLKEHFQR---LSGRELP-------------------IKSAQVI-ESTNFDELAQ-----KEPWLTSC 53 (423)
Q Consensus 2 ~~~~L~E~eak~lL~~y~~~---~~GI~vp-------------------~~~~~~~-~~~~~~ea~~-----~a~~lg~~ 53 (423)
|+..|.||+.|.++.-++.| .|+=..| .....+- ..+..++..+ ...|+-+.
T Consensus 1 a~k~lfe~dtKAi~~~~q~ravqlckr~~psVaa~~~~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~~~faS~ 80 (600)
T KOG1254|consen 1 ARKKLFEYDTKAIVWGMQQRAVQLCKRHFPSVAAIIYFTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVEPWFAST 80 (600)
T ss_pred CCcchhhccchHhhhhhhhhhhhhhhccCccceeeecccccchhheecCCceEEeechhhHHHHHhcCcccceeechhhh
Confidence 57889999999988888777 2322222 1111111 1111233333 23355455
Q ss_pred cEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCC------CceEEEEEEEeCCC
Q 014512 54 KLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPH------NEEFYLNIVSERLG 127 (423)
Q Consensus 54 pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~------~~E~ylgi~~D~~~ 127 (423)
..|.|++.+++.|+|.|.|.+..+-.+..++.+.+.++..+..+.-++.+.+.||+.+++ -.|.|+.+..+|.+
T Consensus 81 rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k~~~iiGPaTvggVePg~fkignt~g~~dnil~~klyR~G 160 (600)
T KOG1254|consen 81 RSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVKGVGIIGPATVGGVEPGVFKIGNTGGMMDNILNSKLYRPG 160 (600)
T ss_pred hhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccccceEEeeeeeccccCCccccCCCCcchhhhhhhcccCCc
Confidence 789999999999999999999976666777878888776543233357789999999997 47999999999999
Q ss_pred CeeeeecCCCcccccccceeEEEecCCccCC----CHhhHHHHHhcCChhhHHHHHHHHHHHHHHhhccCccEeeee---
Q 014512 128 CSVSFSECGGIEIEENWDKVKTIFVPTGACL----ASETSAPLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMN--- 200 (423)
Q Consensus 128 p~il~s~~GGv~iE~~~d~~~~lpi~~~~~l----~~~~a~~l~~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEIN--- 200 (423)
.++.||..|||++|+..+.+.+.-. |.+++ +.+....++++++-.+.+.+.++++.|+.++.+.+.+.+|+|
T Consensus 161 sv~~vS~sGGmsnE~nn~isrtt~g-~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~~e~~k~g 239 (600)
T KOG1254|consen 161 SVIYVSRSGGMSNELNNIISRTTDG-PYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTFLEANKEG 239 (600)
T ss_pred cEEEEecCCCcchhhhhhhhheecc-ceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcccceeehhhhhhcC
Confidence 9999999999999998877666532 22221 446667778888777778899999999999999999999999
Q ss_pred ----ceee-cCC---ceEEEeeeeeeccchhcccccccc--------------------------cccCCCCCCCCCCcc
Q 014512 201 ----PFTL-VDR---KPYPLDMRGELDDTAAFKNFKKWG--------------------------NIEFPLPFGRAMSAT 246 (423)
Q Consensus 201 ----PL~v-~~g---~~~alDaki~idd~A~~r~~~~~~--------------------------~~~~~~~~~~~~~~~ 246 (423)
||++ .-| .++-+|.....|+++.|...+.|. .++++.+|+|..+..
T Consensus 240 ~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Grvvp~~ 319 (600)
T KOG1254|consen 240 KITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGRVVPKT 319 (600)
T ss_pred CccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchhcccccceecCcc
Confidence 9998 444 378899999999999999988888 678888899999999
Q ss_pred cccccccchhhhccCCceEecCCCcEEEEEcCC-cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhc
Q 014512 247 ESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGG-GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCAT 325 (423)
Q Consensus 247 e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~-G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~ 325 (423)
|.....+++..+..++++.++..|+||++..|+ |..+.+.|+....|+-.+.+|+-.+++-+...++.+..+..+++|+
T Consensus 320 Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kfie~~~ 399 (600)
T KOG1254|consen 320 EVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKFIEICT 399 (600)
T ss_pred cCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccccchHHHHHHHHHHh
Confidence 999999999999999999999999999887777 9999999999887666678999999999999999999999988877
Q ss_pred c-CCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCC
Q 014512 326 A-DPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGP 404 (423)
Q Consensus 326 ~-~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~ 404 (423)
. +|+-+..+.-+.|+|++++..++||.+|+.+|.+.+..+.. ..-+.+|..|++.++++.-++.+.+..+.|..+||.
T Consensus 400 m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLltigdRfgg-ald~aaR~f~~ayd~GL~~m~fv~~~~k~~~~V~Gi 478 (600)
T KOG1254|consen 400 MLTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLTIGDRFGG-ALDIAARRFGPAYDKGLAPMRFVGKMRKVPIEVYGI 478 (600)
T ss_pred hccCCCCceeEeccCceEEeccHHHHHHHHHHHHhhhhhhhcc-hhhHHHHhcChhhhccCchHHHhhhhhCCCceecCC
Confidence 3 66656666667899999999999999999999998766544 566999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 014512 405 EATMTGICKQA 415 (423)
Q Consensus 405 ~~t~~~av~~~ 415 (423)
.-++.......
T Consensus 479 ghriksi~n~d 489 (600)
T KOG1254|consen 479 GHRIKSINNPD 489 (600)
T ss_pred cceeeccCCcc
Confidence 87776554433
No 12
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.74 E-value=6.5e-18 Score=150.79 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=108.9
Q ss_pred EEcCCcHHHHHHHHhhccCC--------------CCCCCceeeccCCCC----------HHHHHHHHHHHHhhhccCCCC
Q 014512 275 MVAGGGASVIYADTVGDLGY--------------ASELGNYAEYSGAPN----------EGEVLQYARVVIDCATADPDG 330 (423)
Q Consensus 275 i~nG~G~~~~~~D~l~~~g~--------------gg~paN~lD~gG~a~----------~~~~~~a~~~ll~~~~~~~~~ 330 (423)
|+|||||+|-|+|++.. + |+.++||+|+|||+. ++...++++.+++ ||++
T Consensus 1 l~~GgtL~~Ea~~~i~~--~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~----Dp~v 74 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISD--ALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAA----DPEV 74 (153)
T ss_dssp EESSHHHHHHHHHHHHH--TTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHT----STTE
T ss_pred CcCcHHHHHHHHHHHHH--hhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhc----CCCc
Confidence 68999999999999998 6 788999999999999 8999999999988 9999
Q ss_pred cEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHH-----HHHHHHHhhhhhcCCceeecCCC
Q 014512 331 RKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQ-----RGLAKMRALAEEIGLPIEVYGPE 405 (423)
Q Consensus 331 ~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~-----~a~~~l~~~~~~~Gip~~~~g~~ 405 (423)
++||+|+++|+.+|+++| .++++++++.+. +..++|+|+|+.||+++ +..++|+ ++|+.+.
T Consensus 75 ~vIlvd~~~G~g~~~~~A---~~l~~a~~~~~~--~~~~~pvVa~v~GT~~dpq~~~~~~~~L~----~~G~~v~----- 140 (153)
T PF00549_consen 75 KVILVDIVGGIGSCEDPA---AGLIPAIKEAKA--EGRKKPVVARVCGTNADPQGRMGQAGALE----DAGVIVA----- 140 (153)
T ss_dssp SEEEEEEESSSSSHHHHH---HHHHHHHSHCTH--TTT-SEEEEEEESTTCHTTSCHHHHHHHH----CTTCSCH-----
T ss_pred cEEEEEeccccCchHHHH---HHHHHHHHhccc--cCCCCcEEEEeeeecCCCCCcHHHHHHHH----hCCCccc-----
Confidence 999999999999999999 999999988652 12579999999999999 9999999 7999886
Q ss_pred CCHHHHHHHHH
Q 014512 406 ATMTGICKQAI 416 (423)
Q Consensus 406 ~t~~~av~~~v 416 (423)
++..+|++.|.
T Consensus 141 ~s~~~A~~~A~ 151 (153)
T PF00549_consen 141 ESNAQAARAAG 151 (153)
T ss_dssp HHHHHHHHHHT
T ss_pred ccHHHHHHHcC
Confidence 67788877764
No 13
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.66 E-value=5.1e-17 Score=173.02 Aligned_cols=376 Identities=15% Similarity=0.037 Sum_probs=227.9
Q ss_pred CCCCCCHHHHHHHHHHchhCCCC----CccCCCce----EEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCee
Q 014512 2 ARKKIREYDSKRLLKEHFQRLSG----RELPIKSA----QVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLV 72 (423)
Q Consensus 2 ~~~~L~E~eak~lL~~y~~~~~G----I~vp~~~~----~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV 72 (423)
.++..-+|+.++.|.+| | +||+.... ..+.+. ......+..++ .++|.|..++ +.+....+||
T Consensus 20 ~~~~~vg~~i~~nL~~~-----g~g~i~PVnp~~~~v~G~~ay~s--~~~lp~~~dla-v~~v~~~~~~~i~~~~~~kGv 91 (598)
T COG1042 20 ERPGKLGYEILRNLLEY-----GQGKIYPVNPKYDEVLGVKAYTS--VADLPDAPDLA-VIVVPAKVVPEIVHELGEKGV 91 (598)
T ss_pred CCcchhHHHHHHHHHhc-----CCCceEecCccccccccccccch--HhhCCCCCCee-EEEechhhhHHHHHHhhccCC
Confidence 45567899999999999 9 88873321 134432 33344556676 6888886554 3345555566
Q ss_pred EEe-CCHHHHHHHHHHHhccc--chhccCCcceeEEEEEeecCCCceEEEE--EEEeCCCCeeeeecCCCccccccccee
Q 014512 73 ALN-LDLAQAATFVKECLGKE--MEMSECKGPITTFIIEPFIPHNEEFYLN--IVSERLGCSVSFSECGGIEIEENWDKV 147 (423)
Q Consensus 73 ~l~-~s~eea~~~a~~~l~~~--~~~~g~~~~v~~vlVe~~~~~~~E~ylg--i~~D~~~p~il~s~~GGv~iE~~~d~~ 147 (423)
+.+ .......++.+++.... +.... ......++.++.....+..+| .+.++..+.- +. -|+..++...+..
T Consensus 92 ~~~i~is~gf~e~~~~~~~~e~~~~~~a--~~~~~rligPn~~G~~~~~~glna~f~p~~~~~-~~-g~~afvsqsgav~ 167 (598)
T COG1042 92 KGAIVISAGFREAGEEGMELEKELVEAA--RKYGMRIIGPNCLGLINPIIGLNATFDPVFGLG-RG-GGGAFVSQSGAVS 167 (598)
T ss_pred ceEEEechhhhHHhhhHhHHHHHHHHHH--HhcCceEeccccccccccccccccccCcccccc-cC-CCeEEEEechHHH
Confidence 554 23333444443322111 10000 112457889998888899999 7777764322 43 5667787776665
Q ss_pred EEE-ecCCccCCC-HhhHHHHHh---cCChhhHHHHHHHHHHHHHHhhcc-CccEeeeeceee-cC-CceEEEeeeeeec
Q 014512 148 KTI-FVPTGACLA-SETSAPLVA---TLPLEIRGEIQEFIKSVFTLFQDL-DFTFLEMNPFTL-VD-RKPYPLDMRGELD 219 (423)
Q Consensus 148 ~~l-pi~~~~~l~-~~~a~~l~~---g~~~~~~~~l~~~l~~L~~l~~~~-d~~~lEINPL~v-~~-g~~~alDaki~id 219 (423)
.++ +....+++- ...+..... +........+.|...++..+|.+. +....++||... .. ..++++|+..+..
T Consensus 168 ~~il~~~~~~~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~~~~~kpii~lk~gr~~~ 247 (598)
T COG1042 168 FAILDWANEDGMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAAERKKPIIALKAGRSEA 247 (598)
T ss_pred HhccchhhhcCCceeEEEeecchhhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHHHhcCCCEEEEeccCCHH
Confidence 554 333222110 000000000 111112223344444555555554 344667888877 33 3589999888766
Q ss_pred cchhcccc-cccc-c--c---cCCC-CCCCCCCcccccccccchhhhccCCceEec-CCCcEEEEEcCCcHHHHHHHHhh
Q 014512 220 DTAAFKNF-KKWG-N--I---EFPL-PFGRAMSATESFIHDLDEKTSASLKFTVLN-PKGRIWTMVAGGGASVIYADTVG 290 (423)
Q Consensus 220 d~A~~r~~-~~~~-~--~---~~~~-~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~-l~g~I~~i~nG~G~~~~~~D~l~ 290 (423)
....+-+. --+. . . -+.. -.-|..+..|.. ...+.--.+.. -+.|+++++||||++.++.|.+.
T Consensus 248 ~akAa~shTgslag~~~~y~Aa~~~agvir~~~~~elf-------~~~k~l~~~~~~~g~~~~ivtn~Gg~gvla~D~l~ 320 (598)
T COG1042 248 GAKAAASHTGSLAGSDEAYDAAFKQAGVIRVESIEELF-------DAAKALSHQPPPAGDRVAIITNGGGPGVLAADALE 320 (598)
T ss_pred HHHHHhcccccccccchhhHHHHHhhCceeccChHHHH-------HHHHHhccCCCCCCcceeEEecCCCccccchhHHH
Confidence 43333221 0000 0 0 0000 001233333332 11111111122 25779999999999999999999
Q ss_pred ccCCCCC---------------------CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHHHH
Q 014512 291 DLGYASE---------------------LGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTDVA 348 (423)
Q Consensus 291 ~~g~gg~---------------------paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~va 348 (423)
.. |.+ ..||+|+.|+++.++|.++++.+++ ++++++++++. ++..+...+.|
T Consensus 321 ~~--g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~----~~~~~~llvi~~~~~~~~~~~~a 394 (598)
T COG1042 321 ER--GLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLR----DENVDALLVIVLPPASADPEETA 394 (598)
T ss_pred Hc--CCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHh----ccCCceEEEEecCCCCCCchhhh
Confidence 96 555 2699999999999999999999998 99999988888 77777767777
Q ss_pred hhHHHHHHHHHHhhhhhhcccee-EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 349 ATFNGIIQALKEKESKLKAARMH-LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 349 a~~~gii~a~~~~~~~~~~~~~p-ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+.++.+ .... .++| +++.+||.+++.++++|+ +.|||+| .+|+.++++...+++
T Consensus 395 ---~~~~~~-~~~~-----~~k~~v~~~~gg~~~~~~~~~l~----~~gip~~-----~~pe~a~~a~~~l~~ 449 (598)
T COG1042 395 ---EAIIRA-TAKK-----RGKPVVVSSMGGESSEKARRLLE----EAGIPTY-----PTPERAVKALSALAR 449 (598)
T ss_pred ---HHHHHh-hhhh-----CCCceEEEecCCcchHHHHHHhh----hcCCCCc-----cCchHHHHHHHHHHH
Confidence 888886 2221 3577 555699999999999999 7999998 899999999877664
No 14
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.59 E-value=2.1e-14 Score=149.80 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=110.9
Q ss_pred CCCcEEEEEcCCcHHHHHHHHhhccCCCCCC---------------------CceeeccCCCCHHHHHHHHHHHHhhhcc
Q 014512 268 PKGRIWTMVAGGGASVIYADTVGDLGYASEL---------------------GNYAEYSGAPNEGEVLQYARVVIDCATA 326 (423)
Q Consensus 268 l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~p---------------------aN~lD~gG~a~~~~~~~a~~~ll~~~~~ 326 (423)
.++||++|+|+||+++++.|.+..+ |.+. .||+|++++++++.|.++++.+++
T Consensus 294 ~g~rvaivs~sGG~g~l~aD~~~~~--Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~---- 367 (447)
T TIGR02717 294 KGNRVAIITNAGGPGVIATDACEEN--GLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAE---- 367 (447)
T ss_pred CCCeEEEEECCchHHHHHHHHHHHc--CCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHc----
Confidence 3678999999999999999999985 5663 499999999999999999999998
Q ss_pred CCCCcEEEEEe-cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCC
Q 014512 327 DPDGRKRALVI-GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGP 404 (423)
Q Consensus 327 ~~~~~~ilv~~-~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~ 404 (423)
||+++++++++ +++.++++.++ +.++++.++.. ++|++++ .||...++.++.|+ ++|||+|
T Consensus 368 dp~vd~Vlv~~~~~~~~~~~~~a---~~l~~~~~~~~------~KPvv~~~~gg~~~~~~~~~L~----~~Gip~f---- 430 (447)
T TIGR02717 368 DENVDGVVVVLTPTAMTDPEEVA---KGIIEGAKKSN------EKPVVAGFMGGKSVDPAKRILE----ENGIPNY---- 430 (447)
T ss_pred CCCCCEEEEEccCCccCCHHHHH---HHHHHHHHhcC------CCcEEEEecCCccHHHHHHHHH----hCCCCcc----
Confidence 99999999888 67888887777 88888766641 5788887 66688889999998 7899998
Q ss_pred CCCHHHHHHHHHHHHH
Q 014512 405 EATMTGICKQAIECIS 420 (423)
Q Consensus 405 ~~t~~~av~~~v~~~~ 420 (423)
.+|++|++++..+++
T Consensus 431 -~~p~~A~~al~~~~~ 445 (447)
T TIGR02717 431 -TFPERAVKALSALYR 445 (447)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 899999999877765
No 15
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.19 E-value=8.8e-12 Score=133.20 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=108.3
Q ss_pred CCCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEeCCHHHH
Q 014512 3 RKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALNLDLAQA 81 (423)
Q Consensus 3 ~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea 81 (423)
+..+.|+|++++|++| ||++| .+ ++++ .+|+..+++.++ |...+ +.||+++|||.++.+..++
T Consensus 468 ~~~~~~~e~~~~l~~~-----gi~~~--~~-~~~~--~~ea~~~a~~~~------Kl~s~~i~hksev~gv~l~~~~~~v 531 (598)
T COG1042 468 GTTLDEPEAKELLEAY-----GIPVP--AT-IAST--LDEAVHIAESIG------KLRSPDIDHKSEVGGVMLNRTADAV 531 (598)
T ss_pred ccccCchhhhhHHHHh-----cCccc--cc-ccCC--HHHHHHHHHHhh------hccCCccchhhhccceeecCcHHHH
Confidence 3568899999999999 99999 77 7776 589999998875 75554 6789999999999999999
Q ss_pred HHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC-CCeeeeecCCCcccccccceeEEE
Q 014512 82 ATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL-GCSVSFSECGGIEIEENWDKVKTI 150 (423)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~-~p~il~s~~GGv~iE~~~d~~~~l 150 (423)
.+++..++.+ | ..+.+++||+|.. .|+++++..|+. +|++++| .||+.+|.++|.+.++
T Consensus 532 ~~a~~~~~~~------p-a~i~g~lvq~m~~--~E~~vgv~~dp~fgp~i~~G-~Gg~~ve~l~d~~~~~ 591 (598)
T COG1042 532 EKAADDILAR------P-ARIAGVLVQTMAK--LELIVGVKNDPTFGPLILFG-EGGIEVEVLKDVVVAL 591 (598)
T ss_pred HHHHHhHhcc------c-chhhhhhhHhhhh--ccceeeccCCCcchhHHHhc-CCceEEEeecceeecc
Confidence 9999999865 4 6789999999998 999999999999 7999998 9999999999998887
No 16
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.92 E-value=1e-08 Score=95.12 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=78.6
Q ss_pred HHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcE-EEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 10 DSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKL-VVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pv-VvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
=+|++|++| |||++ .+...++ .++|.+..++.+ .|+ |||++.+++|| ||.++.|.+||.++.+++
T Consensus 5 faK~fm~~~-----~IPTa--~~~~f~~--~~~A~~~l~~~~-~p~~ViKadGla~GK----GV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 5 FAKEFMKRY-----GIPTA--KYKVFTD--YEEALEYLEEQG-YPYVVIKADGLAAGK----GVVIADDREEALEALREI 70 (194)
T ss_dssp HHHHHHHHT-----T-SB----EEEESS--HHHHHHHHHHHS-SSEEEEEESSSCTTT----SEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCCC--CeeEECC--HHHHHHHHHhcC-CCceEEccCCCCCCC----EEEEeCCHHHHHHHHHHh
Confidence 489999999 99988 7888877 699999888886 688 99999999888 899999999999999999
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
+..... | ..-..|+||+++. +.|+.+.+..|...
T Consensus 71 ~~~~~f--g--~~~~~vvIEE~l~-G~E~S~~a~~dG~~ 104 (194)
T PF01071_consen 71 FVDRKF--G--DAGSKVVIEEFLE-GEEVSLFALTDGKN 104 (194)
T ss_dssp HTSSTT--C--CCGSSEEEEE----SEEEEEEEEEESSE
T ss_pred cccccc--C--CCCCcEEEEeccC-CeEEEEEEEEcCCe
Confidence 963321 2 1236799999998 89999999999874
No 17
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.68 E-value=1.1e-07 Score=96.65 Aligned_cols=99 Identities=23% Similarity=0.213 Sum_probs=83.1
Q ss_pred HHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHh
Q 014512 10 DSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (423)
=+|++|++| |||.+ .+...++ +++|.....+.| .|+||||+-+++|| ||+++.+.+||.+++++|+
T Consensus 106 faK~fm~k~-----~IPta--~y~~f~~--~e~a~ayi~~~g-~piVVKadGLaaGK----GV~V~~~~eeA~~a~~~~l 171 (428)
T COG0151 106 FAKDFMKKY-----GIPTA--EYEVFTD--PEEAKAYIDEKG-APIVVKADGLAAGK----GVIVAMTLEEAEAAVDEML 171 (428)
T ss_pred HHHHHHHHc-----CCCcc--cccccCC--HHHHHHHHHHcC-CCEEEecccccCCC----CeEEcCCHHHHHHHHHHHH
Confidence 378999999 98877 6677765 699999999998 79999999999999 9999999999999999998
Q ss_pred cccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 90 GKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 90 ~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
..... | .....|+||++++ +.|+.+=...|...
T Consensus 172 ~~~~f--g--~~g~~VVIEEfL~-GeE~S~~a~~DG~~ 204 (428)
T COG0151 172 EGNAF--G--SAGARVVIEEFLD-GEEFSLQAFVDGKT 204 (428)
T ss_pred hhccc--c--CCCCcEEEEeccc-ceEEEEEEEEcCCe
Confidence 65432 2 1124589999998 89999999999764
No 18
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.60 E-value=2.3e-06 Score=89.52 Aligned_cols=109 Identities=10% Similarity=0.132 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.-+..|++|+++ |||+| ++. .+.+ .+++..++.++| +|+||||....|+| ||.+..|.+|+.++
T Consensus 115 DK~~~r~~l~~~-----gip~p--p~~~~~~~~--~~e~~~~~~~ig-~PvvvKP~~g~gs~----Gv~~v~~~~el~~~ 180 (449)
T TIGR00514 115 DKVSAIETMKKA-----GVPCV--PGSDGLVED--EEENVRIAKRIG-YPVIIKATAGGGGR----GMRVVREPDELVKS 180 (449)
T ss_pred CHHHHHHHHHHC-----CCCCC--CCcccCcCC--HHHHHHHHHHhC-CCEEEEeCCCCCCC----ccEEECCHHHHHHH
Confidence 456788999999 99998 443 3444 588888888887 89999998876666 89999999999988
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
++........ . .....++||++++..+|+.+.+..|..+.++.++
T Consensus 181 ~~~~~~~~~~--~--~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~ 225 (449)
T TIGR00514 181 ISMTRAEAKA--A--FGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLG 225 (449)
T ss_pred HHHHHHHHHH--h--CCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEe
Confidence 8876542211 0 1124689999999788999999999876665553
No 19
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.53 E-value=7.1e-06 Score=81.12 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+.+. +++...+..++ +|+|+||....+++ ||....+.+++.++++
T Consensus 98 dK~~~k~~l~~~-----gIp~p--~~~~~~~~--~~~~~~~~~~~-~P~ivKP~~g~~s~----Gv~~v~~~~el~~~~~ 163 (304)
T PRK01372 98 DKLRTKLVWQAA-----GLPTP--PWIVLTRE--EDLLAAIDKLG-LPLVVKPAREGSSV----GVSKVKEEDELQAALE 163 (304)
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEeCc--chHHHHHhhcC-CCEEEeeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 446678899999 99999 88888774 56677777887 79999999876665 7888889999988877
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.... -..++||++++ ++|+.+.+..|...+++-.
T Consensus 164 ~~~~~----------~~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~ 198 (304)
T PRK01372 164 LAFKY----------DDEVLVEKYIK-GRELTVAVLGGKALPVIEI 198 (304)
T ss_pred HHHhc----------CCcEEEEcccC-CEEEEEEEECCCccceEEE
Confidence 76311 13589999998 7999999887755554433
No 20
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.50 E-value=9.3e-06 Score=82.24 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEeCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
+-+..|++|+++ |||+| ++..+++ .+++.++++.+| +|+|+||... .++| ||.+..|.+|+.+++
T Consensus 98 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~~g~~g~----Gv~~v~~~~el~~a~ 163 (352)
T TIGR01161 98 DRLTQKQFLQKL-----GLPVP--PFLVIKD--EEELDAALQELG-FPVVLKARTGGYDGR----GQYRIRNEADLPQAA 163 (352)
T ss_pred CHHHHHHHHHHc-----CCCCC--CccEeCC--HHHHHHHHHHcC-CCEEEEeCCCCCCCC----CEEEECCHHHHHHHH
Confidence 345668888998 99999 7788876 578888888887 8999999865 2444 889999999998877
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+++.. ..++||++++.+.|+.+.+..|..|.+..+
T Consensus 164 ~~~~~------------~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~ 198 (352)
T TIGR01161 164 KELGD------------RECIVEEFVPFERELSVIVARSADGETAFY 198 (352)
T ss_pred HhcCC------------CcEEEEecCCCCeEEEEEEEEcCCCCEEEE
Confidence 76421 248999999988999888887766654443
No 21
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=98.50 E-value=3.2e-06 Score=79.93 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=79.7
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
..+++++++. |+|+| ++......+.+++.++++++| |||++||-.--||| |.++..|.++..++.+..
T Consensus 3 ~~~~~~~~~~-----gvp~~--pg~~~~~~~~eea~~~a~~iG-yPVliKas~ggGG~----gm~iv~~~~eL~~~~~~~ 70 (211)
T PF02786_consen 3 IRFRKLAKKL-----GVPVP--PGSTVPISSVEEALEFAEEIG-YPVLIKASAGGGGR----GMRIVHNEEELEEAFERA 70 (211)
T ss_dssp HHHHHHHHHT-----T-BBS--SBESSSBSSHHHHHHHHHHH--SSEEEEETTSSTTT----SEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-----CCCcC--CCCCCCCCCHHHHHHHHHhcC-CceEEeeccccccc----ccccccchhhhhhhhhhc
Confidence 3578999999 99998 666651123799999999998 89999998877777 889999999999888876
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
.......-+ -..++||+++...+|+=+=+..|..+-++.+
T Consensus 71 ~~~s~~~fg----~~~v~iek~i~~~reiEvqvi~D~~gn~~~~ 110 (211)
T PF02786_consen 71 QRESPAAFG----DGPVLIEKFIEGAREIEVQVIRDGKGNVVHL 110 (211)
T ss_dssp HHHHHHHHS----TS-EEEEE--SSEEEEEEEEEEETTSEEEEE
T ss_pred cccCccccc----cceEEEeeehhhhhhhhhhhhhccccceeee
Confidence 643321011 2468999999977999999999998755544
No 22
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.48 E-value=1.5e-06 Score=90.75 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-..+|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....+|| ||.+..|.+|+.++++
T Consensus 102 dK~~~K~~l~~~-----GIptp--~~~~~~~--~~e~~~~~~~~g-~PvVVKp~~~~~Gk----GV~iv~~~~el~~a~~ 167 (434)
T PLN02257 102 SKNFMKDLCDKY-----KIPTA--KYETFTD--PAAAKKYIKEQG-APIVVKADGLAAGK----GVVVAMTLEEAYEAVD 167 (434)
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEeCC--HHHHHHHHHHcC-CCEEEEcCCCCCCC----CEEEECCHHHHHHHHH
Confidence 346689999999 99999 7777766 588888888887 79999999877777 8999999999999999
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... +. .-..++||+++. +.|+.+.+..|..
T Consensus 168 ~~~~~~~f--g~--~~~~vlIEefi~-G~E~Sv~~~~dG~ 202 (434)
T PLN02257 168 SMLVKGAF--GS--AGSEVVVEEFLD-GEEASFFALVDGE 202 (434)
T ss_pred HHHhhhhc--cC--CCCeEEEEECCC-CCEEEEEEEECCC
Confidence 88643221 11 124699999998 5699997778854
No 23
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.47 E-value=1.1e-05 Score=82.76 Aligned_cols=103 Identities=19% Similarity=0.104 Sum_probs=77.3
Q ss_pred HHHHHHH-HHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 9 YDSKRLL-KEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 9 ~eak~lL-~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
+..|++| +++ |||+| ++..+++ .+++.+.+.+++ +|+|+||....++| ||.++.|.+|+.++++.
T Consensus 115 ~~~k~~l~~~~-----gip~p--~~~~~~s--~~~l~~~~~~~g-~P~VvKP~~g~~s~----Gv~~v~~~~el~~~~~~ 180 (395)
T PRK09288 115 EGIRRLAAEEL-----GLPTS--PYRFADS--LEELRAAVEEIG-YPCVVKPVMSSSGK----GQSVVRSPEDIEKAWEY 180 (395)
T ss_pred HHHHHHHHHhC-----CCCCC--CceEECC--HHHHHHHHHhcC-CCEEEEeCCCcCCC----CeEEECCHHHHHHHHHH
Confidence 3455666 467 99999 7788876 588888888887 89999998666555 79999999999998888
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
+..... . .-..++||++++.+.|+.+.+..|..+....
T Consensus 181 ~~~~~~---~---~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~ 218 (395)
T PRK09288 181 AQEGGR---G---GAGRVIVEEFIDFDYEITLLTVRAVDGGTHF 218 (395)
T ss_pred HHhhcc---c---cCCCEEEEEecCCCEEEEEEEEEcCCCCEEE
Confidence 753211 1 1145899999998899999888887644333
No 24
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.47 E-value=8.2e-06 Score=83.23 Aligned_cols=100 Identities=21% Similarity=0.126 Sum_probs=73.5
Q ss_pred HHHHHHH-HHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 9 YDSKRLL-KEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 9 ~eak~lL-~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
+..|+++ +++ |||+| ++..+++ .+++.++++++| +|+|+||-...++| ||.+..|.+|+.++++.
T Consensus 102 ~~~~~~~~~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~VvKP~~g~~s~----gv~~v~~~~el~~~~~~ 167 (380)
T TIGR01142 102 EGIRRLAAEEL-----GLPTS--RYMFADS--LDELREAVEKIG-YPCVVKPVMSSSGK----GQSVVRGPEDIEKAWEY 167 (380)
T ss_pred HHHHHHHHHHC-----CCCCC--CceEeCC--HHHHHHHHHHcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHHH
Confidence 3445554 677 99999 7777776 577877788887 89999998655555 89999999999988887
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGC 128 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p 128 (423)
...... . .-..++||++++.+.|+-+.+..+.++.
T Consensus 168 ~~~~~~---~---~~~~~ivEe~i~~~~E~sv~~~~~~~g~ 202 (380)
T TIGR01142 168 AQEGAR---G---GAGRVIVEEFIDFDYEITLLTVRHVDGN 202 (380)
T ss_pred HHhhcc---C---CCCCEEEEEecCCCEEEEEEEEEcCCCC
Confidence 653211 0 1135899999997789888777665543
No 25
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.46 E-value=1.5e-06 Score=90.50 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+.+|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....+|| ||.++.|.+|+.++++
T Consensus 108 dK~~~K~~l~~~-----gIpt~--~~~~~~~--~~ea~~~~~~~~-~PvVVKp~~~~~gk----GV~vv~~~eel~~a~~ 173 (426)
T PRK13789 108 SKHFAKSLMKEA-----KIPTA--SYKTFTE--YSSSLSYLESEM-LPIVIKADGLAAGK----GVTVATEKKMAKRALK 173 (426)
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEeeCC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 456789999999 99998 7777766 588888888887 89999999887777 8999999999999999
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++.... .|.. -..++||+++. +.|+.+.+..|..
T Consensus 174 ~~~~~~~--~g~~--~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 174 EIFKDKK--FGQS--GNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred HHHhhcc--ccCC--CCeEEEEECcC-CeEEEEEEEECCC
Confidence 9873221 1211 14699999998 5899999888754
No 26
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.45 E-value=7.6e-06 Score=86.33 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEE--ecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQV--IESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~--~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.-+..|++|+++ |||+| ++.. ..+ .+++.+.++++| +|+||||-...|+| ||.+..|++|+.++
T Consensus 114 DK~~~r~~l~~~-----GIp~p--p~~~~~~~~--~~e~~~~~~~ig-yPvvvKp~~ggGg~----Gv~~v~~~~eL~~a 179 (472)
T PRK07178 114 DKTEARRAMIKA-----GVPVT--PGSEGNLAD--LDEALAEAERIG-YPVMLKATSGGGGR----GIRRCNSREELEQN 179 (472)
T ss_pred CHHHHHHHHHHC-----CCCCC--CCcCcCCCC--HHHHHHHHHHcC-CcEEEEeCCCCCCC----CceEeCCHHHHHHH
Confidence 346678889998 99997 4442 333 588888888997 89999998766666 89999999999988
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
++..........+ ...++||+++...+|+-+.+..|..+.++.
T Consensus 180 ~~~~~~~~~~~~~----~~~v~iE~~i~~~~eiev~v~~d~~G~~v~ 222 (472)
T PRK07178 180 FPRVISEATKAFG----SAEVFLEKCIVNPKHIEVQILADSHGNVVH 222 (472)
T ss_pred HHHHHHHHHHhcC----CCCEEEEEcCCCCeEEEEEEEEECCCCEEE
Confidence 7765432211011 134899999988899889999997765543
No 27
>PRK08462 biotin carboxylase; Validated
Probab=98.44 E-value=7.9e-06 Score=85.39 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
.-+..|++|++. |||+|......+.+ .+++.++++++| +|+||||..-.|+| ||.+..|.+|+.+++.
T Consensus 117 dK~~~r~~l~~~-----gIp~pp~~~~~~~~--~~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~~v~~~~eL~~~~~ 184 (445)
T PRK08462 117 DKSKAKEVMKRA-----GVPVIPGSDGALKS--YEEAKKIAKEIG-YPVILKAAAGGGGR----GMRVVEDESDLENLYL 184 (445)
T ss_pred CHHHHHHHHHHC-----CCCCCCCcccccCC--HHHHHHHHHHcC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHH
Confidence 345678888888 99998321223444 578888888887 89999998876666 8999999999988776
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.........+ -..++||++++.++|+-+.+..|..+.++.+
T Consensus 185 ~~~~~~~~~~~----~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~ 226 (445)
T PRK08462 185 AAESEALSAFG----DGTMYMEKFINNPRHIEVQILGDKHGNVIHV 226 (445)
T ss_pred HHHHHHHhccC----CCcEEEeccCCCCeEEEEEEEECCCCCEEEE
Confidence 54322111011 1258999999878898888888876655544
No 28
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.43 E-value=2.2e-06 Score=88.96 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+.+ .+++.+.+++++ +|+||||....|+| ||.++.|.+|+.++++
T Consensus 102 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~P~VvKP~~~~gs~----Gv~~v~~~~el~~~~~ 167 (420)
T PRK00885 102 SKAFAKDFMARY-----GIPTA--AYETFTD--AEEALAYLDEKG-APIVVKADGLAAGK----GVVVAMTLEEAKAAVD 167 (420)
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEeCC--HHHHHHHHHHcC-CCEEEEeCCCCCCC----cEEEeCCHHHHHHHHH
Confidence 345678899999 99999 7777766 578888888887 89999998877777 7999999999999998
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... + ..-..+|||++++ +.|+.+.+..|..
T Consensus 168 ~~~~~~~~--~--~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 168 DMLAGNKF--G--DAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred HHhhcccc--c--CCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 88643211 1 1124699999998 6899999988764
No 29
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.42 E-value=1.7e-05 Score=84.19 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEE--ecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQV--IESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~--~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.-+.+|++|+++ |||+| ++.. ..+ .+++.+.++++| ||++|||..-.||| ||++..|.+|+.++
T Consensus 115 DK~~~k~~l~~~-----GVpv~--p~~~~~v~~--~~e~~~~a~~ig-yPvvIKp~~GgGG~----Gv~iv~~~~eL~~a 180 (499)
T PRK08654 115 SKINAKKLMKKA-----GVPVL--PGTEEGIED--IEEAKEIAEEIG-YPVIIKASAGGGGI----GMRVVYSEEELEDA 180 (499)
T ss_pred CHHHHHHHHHHc-----CcCCC--CCcCcCCCC--HHHHHHHHHHhC-CCEEEEeCCCCCCC----eEEEeCCHHHHHHH
Confidence 346788999999 99997 5443 333 688888889997 89999998766666 99999999999888
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
++.........-+ -..++||++++..+|+-+.+..|..+.++.++
T Consensus 181 ~~~~~~~a~~~f~----~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~ 225 (499)
T PRK08654 181 IESTQSIAQSAFG----DSTVFIEKYLEKPRHIEIQILADKHGNVIHLG 225 (499)
T ss_pred HHHHHHHHHHhCC----CCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 8765422111001 13589999999889999999999877666543
No 30
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.42 E-value=2.5e-06 Score=87.56 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+-+|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....++| ||.++.|.+|+.++.+
T Consensus 67 dK~~~k~~l~~~-----gIptp--~~~~~~~--~~ea~~~~~~~g-~PvVvKp~~~~~gk----GV~iv~~~~el~~a~~ 132 (379)
T PRK13790 67 SKLFAKKIMEKY-----NIPTA--DYKEVER--KKDALTYIENCE-LPVVVKKDGLAAGK----GVIIADTIEAARSAIE 132 (379)
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 446678999999 99999 7777766 578888888887 89999999877777 8999999999999999
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
++++... -..++||++++ +.|+-+.+..|..
T Consensus 133 ~~~~~~~--------~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 133 IMYGDEE--------EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred HHHhcCC--------CCeEEEEEccc-CceEEEEEEeeCC
Confidence 8764221 13589999998 5899999888754
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.41 E-value=2.1e-05 Score=80.45 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=76.9
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEeCCHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
+.-|++|+++ |||+| ++..+++ .+++.++++++| +|+|+||-.. .++| ||.+..|.+|+.+++++
T Consensus 102 ~~~k~~l~~~-----Gip~p--~~~~v~s--~~~l~~~~~~~g-~P~vlKp~~~g~~g~----Gv~~v~~~~el~~a~~~ 167 (372)
T PRK06019 102 LTEKQFLDKL-----GIPVA--PFAVVDS--AEDLEAALADLG-LPAVLKTRRGGYDGK----GQWVIRSAEDLEAAWAL 167 (372)
T ss_pred HHHHHHHHHC-----CCCCC--CceEeCC--HHHHHHHHHHcC-CcEEEEeCCCCcCCC----CeEEECCHHHHHHHHHh
Confidence 4467888888 99999 7788876 578888888887 8999999753 3445 88889999998888776
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+. . ..++||++++.++|+.+.+.+|.+|.+..+
T Consensus 168 ~~-------~-----~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~ 200 (372)
T PRK06019 168 LG-------S-----VPCILEEFVPFEREVSVIVARGRDGEVVFY 200 (372)
T ss_pred cC-------C-----CCEEEEecCCCCeEEEEEEEECCCCCEEEe
Confidence 51 1 348999999988999998888877655544
No 32
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.41 E-value=1.8e-05 Score=82.72 Aligned_cols=107 Identities=9% Similarity=0.110 Sum_probs=79.3
Q ss_pred HHHHHHHHHHchhCCCCCccCCCce--EEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSA--QVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~--~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
-+..|++|+++ |||+| ++ ..+++ .+++.+.+..++ +|+||||....|+| ||.+..|.+|+.+++
T Consensus 116 K~~~r~~l~~~-----gIp~p--p~~~~~v~~--~~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~iv~~~~el~~~~ 181 (451)
T PRK08591 116 KVTAKATMKKA-----GVPVV--PGSDGPVDD--EEEALAIAKEIG-YPVIIKATAGGGGR----GMRVVRTEAELEKAF 181 (451)
T ss_pred HHHHHHHHHHc-----CCCCC--CCcccccCC--HHHHHHHHHHcC-CCEEEEECCCCCCc----eEEEECCHHHHHHHH
Confidence 45678888888 99998 44 34444 578888888887 89999998765555 899999999999888
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++.........+ -..++||++++..+|+.+.+..|..+.++.+
T Consensus 182 ~~~~~~~~~~~~----~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~ 224 (451)
T PRK08591 182 SMARAEAKAAFG----NPGVYMEKYLENPRHIEIQVLADGHGNAIHL 224 (451)
T ss_pred HHHHHHHHHhcC----CCCEEEEeCCCCCcEEEEEEEEcCCCCEEEE
Confidence 876532110001 1358999999977898899999987766544
No 33
>PRK05586 biotin carboxylase; Validated
Probab=98.39 E-value=2.2e-05 Score=82.20 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=78.7
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
-+..|++|+++ |||+| ++. .+.+ .+++.++++++| ||+||||..-.|+| ||.+..|.+|+.+++
T Consensus 116 K~~~k~~l~~~-----GIpvp--~~~~~~~~~--~~e~~~~~~~ig-yPvvvKP~~gggg~----Gv~~v~~~~el~~a~ 181 (447)
T PRK05586 116 KSNAREIMIKA-----GVPVV--PGSEGEIEN--EEEALEIAKEIG-YPVMVKASAGGGGR----GIRIVRSEEELIKAF 181 (447)
T ss_pred HHHHHHHHHHC-----CCCCC--CCcccccCC--HHHHHHHHHHcC-CCEEEEECCCCCCC----eeEEECCHHHHHHHH
Confidence 45678899999 99998 542 3444 578888888887 89999997655555 899999999998887
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++.........+ -..++||++++..+|+-+.+..|..+.++.+
T Consensus 182 ~~~~~~~~~~~~----~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~ 224 (447)
T PRK05586 182 NTAKSEAKAAFG----DDSMYIEKFIENPKHIEFQILGDNYGNVVHL 224 (447)
T ss_pred HHHHHHHHHhcC----CCeEEEEecCCCCeEEEEEEEECCCCCEEEE
Confidence 765432110001 1358999999977898898999887766554
No 34
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.39 E-value=2.7e-06 Score=88.20 Aligned_cols=100 Identities=21% Similarity=0.147 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCc-EEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCK-LVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
.-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +| +|+||+...|+| ||.+..|.+++.+++
T Consensus 104 dK~~~k~~l~~~-----gIp~p--~~~~~~~--~~~~~~~~~~~g-~P~~VvKp~~~~gg~----Gv~~v~~~~el~~~~ 169 (423)
T TIGR00877 104 SKAFAKDFMKRY-----GIPTA--EYEVFTD--PEEALSYIQEKG-APAIVVKADGLAAGK----GVIVAKTNEEAIKAV 169 (423)
T ss_pred CHHHHHHHHHHC-----CCCCC--CeEEECC--HHHHHHHHHhcC-CCeEEEEECCCCCCC----CEEEECCHHHHHHHH
Confidence 346678899999 99998 7777776 588888888887 89 999998877777 899999999999998
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
++++...+ |. ....++||++++ +.|+.+.+..|..
T Consensus 170 ~~~~~~~~---g~--~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 170 EEILEQKF---GD--AGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred HHHHHHhc---CC--CCCeEEEEECcc-CceEEEEEEEcCC
Confidence 88875432 11 124699999999 5899999998864
No 35
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.39 E-value=1.3e-05 Score=84.49 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.-+..|++|+++ |||+| ++. .+.+ .+++.++++++| +|+||||....||| ||.+..|++|+.++
T Consensus 118 DK~~~r~~l~~~-----GIp~~--p~~~~~v~~--~~e~~~~~~~ig-yPvvvKp~~gggg~----Gv~~v~~~~eL~~a 183 (467)
T PRK12833 118 DKARARRTARRA-----GVPTV--PGSDGVVAS--LDAALEVAARIG-YPLMIKAAAGGGGR----GIRVAHDAAQLAAE 183 (467)
T ss_pred CHHHHHHHHHHc-----CCCCC--CCcCcCcCC--HHHHHHHHHHhC-CCEEEEECCCCCCC----eEEEECCHHHHHHH
Confidence 456788999999 99998 543 4444 588888888997 89999998766666 89999999999988
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
++..........+ -..++||++++.++|+-+.+..|..+
T Consensus 184 ~~~~~~~~~~~~~----~~~vlvEefi~~~~ei~v~v~~dg~~ 222 (467)
T PRK12833 184 LPLAQREAQAAFG----DGGVYLERFIARARHIEVQILGDGER 222 (467)
T ss_pred HHHHHHHHHHhcC----CCcEEEEecCCCCEEEEEEEEeCCCc
Confidence 7765432110001 13589999999889999999888653
No 36
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.38 E-value=2.3e-05 Score=84.70 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEeCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
+-+..|++|+++ |||+| ++..+.+ .+++.++.+++| +|+||||-.. .++| |+.+..|.+|+.+++
T Consensus 121 DK~~~K~~l~~~-----GIptp--~~~~v~~--~~el~~~~~~ig-~P~VvKP~~ggs~g~----Gv~~v~~~~eL~~a~ 186 (577)
T PLN02948 121 DKYAQKVHFSKH-----GIPLP--EFMEIDD--LESAEKAGDLFG-YPLMLKSRRLAYDGR----GNAVAKTEEDLSSAV 186 (577)
T ss_pred CHHHHHHHHHHC-----CcCCC--CeEEeCC--HHHHHHHHHhcC-CcEEEEeCCCCCCCC----CeEEECCHHHHHHHH
Confidence 345568889998 99999 7787766 577877888897 8999999754 2455 788889999998887
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.+... . ..++||++++..+|+.+.+..|.++.+..+
T Consensus 187 ~~~~~~-----~-----~~vlvEefI~~~~EisV~v~r~~~G~i~~~ 223 (577)
T PLN02948 187 AALGGF-----E-----RGLYAEKWAPFVKELAVMVARSRDGSTRCY 223 (577)
T ss_pred HHhhCC-----C-----CcEEEEecCCCCeEEEEEEEECCCCCEEEe
Confidence 775321 1 247999999988999999998876654443
No 37
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.35 E-value=1.9e-05 Score=82.96 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcc--cCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPW--LTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~--lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
..-...|+++++. |||+| ++......+.+++.++++. +| +|+||||-.-.+++ ||.++.+.+|...
T Consensus 141 mDK~~tK~l~~~a-----GIPtp--p~~~~~~~~~eel~~~~~~~~IG-yPvVVKP~~GGSS~----GV~~Vkn~eELe~ 208 (493)
T PRK06524 141 DSKIVTTRLANEA-----GVPSV--PHVLGRVDSYDELSALAHGAGLG-DDLVVQTPYGDSGS----TTFFVRGQRDWDK 208 (493)
T ss_pred CCHHHHHHHHHHc-----CCCCC--CcccccCCCHHHHHHHHHhccCC-CcEEEEECCCCCCc----CEEEeCCHHHHHH
Confidence 3456788999998 99999 6555321224566555554 87 89999998543334 8889999999998
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCe
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCS 129 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~ 129 (423)
+++++.+. ..++||++++ +.|+-|.+..|..+.+
T Consensus 209 a~~~~~~~-----------~~viVEe~I~-GrEitVev~vd~dG~V 242 (493)
T PRK06524 209 YAGGIVGQ-----------PEIKVMKRIR-NVEVCIEACVTRHGTV 242 (493)
T ss_pred HHHHhcCC-----------CCEEEEeccC-cEEEEEEEEEeCCCCE
Confidence 87776431 2478999997 7999998888876654
No 38
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.34 E-value=1e-05 Score=93.90 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+.+|++|+++ |||+|. ...++++ .+++.+++.++| +|+||||....|+| ||.++.|.+|+.++++
T Consensus 114 DK~~ar~ll~~~-----GVPt~p-~~~lv~s--~dea~~~a~~ig-yPvVVKP~~ggGG~----GV~iv~~~eEL~~a~~ 180 (1201)
T TIGR02712 114 LKHTARELAEAA-----GVPLLP-GTGLLSS--LDEALEAAKEIG-YPVMLKSTAGGGGI----GMQKCDSAAELAEAFE 180 (1201)
T ss_pred CHHHHHHHHHHC-----CCCCCC-ceeecCC--HHHHHHHHHhcC-CeEEEEECCCCCCC----CEEEECCHHHHHHHHH
Confidence 456789999999 999861 2445555 588888888897 89999998876666 8999999999998877
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.........+ -.+++||++++.++|+-+.+..|..+.++.+
T Consensus 181 ~~~~~~~~~f~----~~~vlVEefI~g~~eveV~v~~Dg~g~vv~l 222 (1201)
T TIGR02712 181 TVKRLGESFFG----DAGVFLERFVENARHVEVQIFGDGKGKVVAL 222 (1201)
T ss_pred HHHHHHHHhcC----CCcEEEEecCCCCEEEEEEEEECCCCeEEEe
Confidence 76432110001 1358999999988999999999987766655
No 39
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.34 E-value=1.5e-05 Score=78.98 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
.+-+-.|++|+++ |||+| ++....+. . ...+.++ +|+||||-.-.+++ ||.+..|.+|+.++.
T Consensus 97 ~DK~~~k~~l~~~-----gIptp--~~~~~~~~--~---~~~~~~~-~P~vVKP~~ggss~----Gv~~v~~~~eL~~a~ 159 (296)
T PRK14569 97 MDKMISKEILMHH-----RMPTP--MAKFLTDK--L---VAEDEIS-FPVAVKPSSGGSSI----ATFKVKSIQELKHAY 159 (296)
T ss_pred HCHHHHHHHHHHC-----CCCCC--CeEEEchh--h---hhHhhcC-CCEEEEeCCCCCCc----CeEEcCCHHHHHHHH
Confidence 3456789999999 99999 66665431 1 1235666 89999997543223 688889999998887
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCC
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGC 128 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p 128 (423)
++... . ..++||++++ ++|+.+++..|...+
T Consensus 160 ~~~~~------~-----~~~lvEefI~-G~E~tv~vl~~~~~~ 190 (296)
T PRK14569 160 EEASK------Y-----GEVMIEQWVT-GKEITVAIVNDEVYS 190 (296)
T ss_pred HHHHh------c-----CCEEEEcccc-cEEEEEEEECCcCcc
Confidence 76521 1 2489999998 799999998654433
No 40
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.26 E-value=6.4e-05 Score=78.55 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+|........+ .+++.+.+..++ +|+||||....|+| ||.+..|.+|+.++.+
T Consensus 115 dK~~~k~~l~~~-----gIp~p~~~~~~~~~--~~e~~~~~~~~~-~P~VvKP~~g~gs~----Gv~iv~~~~el~~a~~ 182 (450)
T PRK06111 115 SKIEARRAMQAA-----GVPVVPGITTNLED--AEEAIAIARQIG-YPVMLKASAGGGGI----GMQLVETEQELTKAFE 182 (450)
T ss_pred CHHHHHHHHHHC-----CCCCCCCcCcCcCC--HHHHHHHHHHhC-CCEEEEeCCCCCCc----eEEEECCHHHHHHHHH
Confidence 456678899999 99998322233333 678888888887 89999998877666 8999999999998888
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.........+ -..++||++++..+|+-+++..|..+.++.+
T Consensus 183 ~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~ 224 (450)
T PRK06111 183 SNKKRAANFFG----NGEMYIEKYIEDPRHIEIQLLADTHGNTVYL 224 (450)
T ss_pred HHHHHHHHhcC----CCcEEEEcccCCCcEEEEEEEEcCCCCEEEE
Confidence 75421110001 1258999999977888888888877655443
No 41
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.26 E-value=7.3e-06 Score=94.41 Aligned_cols=103 Identities=19% Similarity=0.333 Sum_probs=81.6
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
..-|++|+++ |||+| ++..+++ .+++.+++.++| +|+||||....||+ |+.++.|++|+.+++++.
T Consensus 130 ~~~k~~l~~~-----GIpvp--~~~~v~s--~ee~~~~~~~ig-yPvVVKP~~g~gG~----Gv~iv~~~eEL~~a~~~~ 195 (1068)
T PRK12815 130 ERFRALMKEL-----GEPVP--ESEIVTS--VEEALAFAEKIG-FPIIVRPAYTLGGT----GGGIAENLEELEQLFKQG 195 (1068)
T ss_pred HHHHHHHHHc-----CcCCC--CceeeCC--HHHHHHHHHHcC-CCEEEEECcCCCCC----ceEEECCHHHHHHHHHHH
Confidence 3447888888 99999 7788876 588888888897 89999998666665 567788999999998877
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
++.. ....++||+++++.+|+.+.+.+|..+.++.++
T Consensus 196 ~~~s--------~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~ 232 (1068)
T PRK12815 196 LQAS--------PIHQCLLEESIAGWKEIEYEVMRDRNGNCITVC 232 (1068)
T ss_pred HhcC--------CCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEE
Confidence 6431 234699999999778999999999876554443
No 42
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.25 E-value=3.3e-05 Score=70.75 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=67.4
Q ss_pred HHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEeCCHHHHHHHHHHHhcccc
Q 014512 15 LKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALNLDLAQAATFVKECLGKEM 93 (423)
Q Consensus 15 L~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~ 93 (423)
|++. |||+| ++..+.+ .+++..++.++| +|+|+|+-.. -.|| |..+.+|.+++..+++.+-.
T Consensus 1 l~~~-----gip~~--~~~~i~~--~~~l~~a~~~iG-~P~vlK~~~~GYDGk----Gq~~i~~~~dl~~a~~~~~~--- 63 (172)
T PF02222_consen 1 LDEL-----GIPTA--PYATIDS--LEDLEEAAESIG-FPAVLKTRRGGYDGK----GQFVIRSEEDLEKAWQELGG--- 63 (172)
T ss_dssp HHHT-----T--B---EEEEESS--HHHHHHHHHHHT-SSEEEEESSSSCTTT----TEEEESSGGGHHHHHHHTTT---
T ss_pred Cccc-----CCCCC--CeEEECC--HHHHHHHHHHcC-CCEEEEccCcCcCCC----ccEEECCHHHHHHHHHhcCC---
Confidence 5667 99999 8899987 689999999998 8999995433 3334 77777888888888777611
Q ss_pred hhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 94 EMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 94 ~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
..+++|++++..+|+-+-+.+|.+|.+..+-
T Consensus 64 ---------~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp 94 (172)
T PF02222_consen 64 ---------GPCILEEFVPFDREISVIVARDQDGEIRFYP 94 (172)
T ss_dssp ---------SCEEEEE---ESEEEEEEEEEETTSEEEEEE
T ss_pred ---------CcEEEEeccCCcEEEEEEEEEcCCCCEEEEc
Confidence 2378999999999999999999987655543
No 43
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.23 E-value=9e-05 Score=78.38 Aligned_cols=110 Identities=11% Similarity=0.176 Sum_probs=77.3
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEe-cCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVI-ESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~-~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
-+..|++|+++ |||+| ++... ...+.+++.+.++++| ||+||||-.-.|+| ||.+..|.+|+.++++
T Consensus 115 K~~~k~~l~~~-----gIpvp--p~~~~~~~~~~~~~~~~~~~ig-yPvvvKP~~ggGg~----Gv~iv~~~~eL~~a~~ 182 (478)
T PRK08463 115 KNIARYLMKKN-----GIPIV--PGTEKLNSESMEEIKIFARKIG-YPVILKASGGGGGR----GIRVVHKEEDLENAFE 182 (478)
T ss_pred HHHHHHHHHHc-----CCCCC--CCccccCCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----ceEEeCCHHHHHHHHH
Confidence 45678889999 99997 43322 1123678888888897 89999998766666 8999999999988777
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
..........+ -..++||+++...+|+-+.+..|..+.++.++
T Consensus 183 ~~~~~a~~~~~----~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~ 225 (478)
T PRK08463 183 SCKREALAYFN----NDEVFMEKYVVNPRHIEFQILGDNYGNIIHLC 225 (478)
T ss_pred HHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 54321110011 13589999998778888888888766655443
No 44
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.20 E-value=1.5e-05 Score=72.12 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=71.3
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..+++++++ |||+| +...+.+ .+++......++ +|+||||..-.|++ ||.+..|++++.++.++
T Consensus 5 K~~~~~~~~~~-----gv~~P--~~~~~~~--~~~~~~~~~~~~-~p~vvKp~~g~gs~----gv~~~~~~~~l~~~~~~ 70 (184)
T PF13535_consen 5 KYRMRELLKKA-----GVPVP--KTRIVDS--EEELRAFAEDLG-FPFVVKPVDGSGSR----GVFIVHSPEELEAALAE 70 (184)
T ss_dssp HHHHHHHHHHH-----TS------EEEECS--HHHHHHHHHHSS-SSEEEEESS-STTT----T-EEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CcCCC--CEEEECC--HHHHHHHHHHcC-CCEEEEcCccccCC----CEEEeCCHHHHHHHHHH
Confidence 35678899999 99999 7788877 588888888887 79999998876665 89889999999999888
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCe
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCS 129 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~ 129 (423)
+....- .....++||++++ +.|+.+-+..+ .+.+
T Consensus 71 ~~~~~~------~~~~~~ivqe~i~-g~e~~~~~~~~-~G~~ 104 (184)
T PF13535_consen 71 IREDSP------LGNGPVIVQEYIP-GDEYSVDGVVD-DGEV 104 (184)
T ss_dssp HHHHHS-------HSSSEEEEE----SEEEEEEEEEE-TTEE
T ss_pred HHHhcc------cCCccEEEEEeee-eeeEEEEEEEE-cceE
Confidence 764321 0124599999999 78999998888 5544
No 45
>PLN02735 carbamoyl-phosphate synthase
Probab=98.16 E-value=9.5e-05 Score=85.36 Aligned_cols=101 Identities=14% Similarity=0.252 Sum_probs=80.6
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+..|++|+++ |||+| ++..+++ .+++.++++++| |||+|||....||| |+.++.|.+|+.++.++.
T Consensus 704 ~~~k~~l~~~-----GIp~p--~~~~v~s--~eea~~~a~~iG-yPvvVKP~~g~gG~----G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 704 ERFNAILNEL-----KIEQP--KGGIARS--EADALAIAKRIG-YPVVVRPSYVLGGR----AMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred HHHHHHHHHc-----CCCCC--CeeEeCC--HHHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHH
Confidence 4568888888 99999 7777766 588888888997 89999998766777 899999999999888776
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
.... + -..++||++++.++|+-+.+..|..+.+++
T Consensus 770 ~~~~----~----~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~ 804 (1102)
T PLN02735 770 VEVD----P----ERPVLVDKYLSDATEIDVDALADSEGNVVI 804 (1102)
T ss_pred HHhc----C----CCCEEEEEecCCcEEEEEEEEECCCCCEEE
Confidence 5321 1 124899999988899999999997765544
No 46
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.14 E-value=7.7e-05 Score=86.04 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.-+.+|++++++ |||+| ++. ...+ .+++.+.++++| ||++|||-.-.||| |+++..+.+|+.++
T Consensus 115 DK~~ar~la~~~-----GVPvp--p~t~~~v~~--~eea~~~ae~iG-yPvIVKP~~GGGGr----G~riV~~~eEL~~a 180 (1143)
T TIGR01235 115 DKVAARNLAIKA-----GVPVV--PGTDGPPET--MEEVLDFAAAIG-YPVIIKASWGGGGR----GMRVVRSEADVADA 180 (1143)
T ss_pred CHHHHHHHHHHc-----CCCCC--CCcccCcCC--HHHHHHHHHHcC-CCEEEEECCCCCCC----ccEEeCCHHHHHHH
Confidence 456788999999 99998 443 3333 588888888997 89999997655555 89999999999888
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
+++.........+ -..++||++++..+|+-+.+..|..+.++-
T Consensus 181 ~~~a~~ea~~~fg----~~~vlIEefI~g~reIeVqVlgD~~G~vv~ 223 (1143)
T TIGR01235 181 FQRAKSEAKAAFG----NDEVYVEKLIERPRHIEVQLLGDKHGNVVH 223 (1143)
T ss_pred HHHHHHHHHHhcC----CCcEEEEEcCCCCeEEEEEEEEeCCCCEEE
Confidence 7766432111011 135899999987889999999998776543
No 47
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.14 E-value=6.3e-05 Score=86.69 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=77.4
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+.-+++|+++ |||+| ++..+++ .+|+.+.+.++| +|+||||....|+| ||.++.|.+|..+++++.
T Consensus 671 ~~f~~lL~~~-----GIp~P--~~~~v~s--~ee~~~~~~~ig-yPvIVKP~~~~Gg~----gv~iv~~~eeL~~~l~~a 736 (1050)
T TIGR01369 671 EKFSELLDEL-----GIPQP--KWKTATS--VEEAVEFASEIG-YPVLVRPSYVLGGR----AMEIVYNEEELRRYLEEA 736 (1050)
T ss_pred HHHHHHHHHC-----CcCCC--CeEEECC--HHHHHHHHHhcC-CCEEEEECCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 3456778888 99999 8888877 588888888997 89999997766776 788899999999988877
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
.... + -..++||++++.+.|+-+.+..|..
T Consensus 737 ~~~s-----~---~~~vlVeefI~~G~E~~Vd~l~d~g 766 (1050)
T TIGR01369 737 VEVS-----P---EHPVLIDKYLEDAVEVDVDAVSDGE 766 (1050)
T ss_pred HHhC-----C---CCCEEEeecCCCCeEEEEEEEEeCC
Confidence 5321 1 1348999999988999999998864
No 48
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=98.13 E-value=7.7e-05 Score=77.80 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=79.2
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-..+++++++. |||+|.+....+.+ .+|+.+.++++| +||+|||-.-.||| ||+++.+.+++.+++..
T Consensus 116 K~~ar~~~~~a-----GVP~vpgs~~~~~~--~ee~~~~a~~iG-yPVivKa~~GgGg~----G~r~v~~~~el~~a~~~ 183 (449)
T COG0439 116 KITARRLMAKA-----GVPVVPGSDGAVAD--NEEALAIAEEIG-YPVIVKAAAGGGGR----GMRVVRNEEELEAAFEA 183 (449)
T ss_pred HHHHHHHHHHc-----CCCcCCCCCCCcCC--HHHHHHHHHHcC-CCEEEEECCCCCcc----cEEEECCHHHHHHHHHH
Confidence 36789999999 99998443222222 589999999998 89999999888888 99999999999999998
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.+.....-+. ..+++|+++...+=+-+-+.-|..+-+|=.
T Consensus 184 ~~~ea~~~fg~----~~v~iEk~i~~~rhievqv~gD~~g~~i~l 224 (449)
T COG0439 184 ARGEAEAAFGN----PRVYLEKFIEGPRHIEVQVLGDGHGNVIHL 224 (449)
T ss_pred HHHHHHHhcCC----CcEEeeeeccCCceEEEEEEEcCcccEEEE
Confidence 87644321121 238999999865544455556655544433
No 49
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.12 E-value=1.9e-05 Score=90.85 Aligned_cols=102 Identities=14% Similarity=0.259 Sum_probs=80.9
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+..|++|+++ |||+| ++..+++ .+++.++++++| +|+||||..-.||| |+.++.|++|+.+++++.
T Consensus 129 ~~~k~~l~~~-----Gipvp--~~~~v~s--~~e~~~~~~~ig-yPvIVKP~~g~gg~----Gv~iv~~~eeL~~~~~~~ 194 (1050)
T TIGR01369 129 ELFREAMKEI-----GEPVP--ESEIAHS--VEEALAAAKEIG-YPVIVRPAFTLGGT----GGGIAYNREELKEIAERA 194 (1050)
T ss_pred HHHHHHHHHC-----CCCCC--CeeecCC--HHHHHHHHHHhC-CCeEEECCCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 4557888888 99999 7788876 578888888997 89999998666666 678889999999887776
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+... ....++||+++++.+|+.+.+.+|..+.++.+
T Consensus 195 ~~~s--------~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~ 230 (1050)
T TIGR01369 195 LSAS--------PINQVLVEKSLAGWKEIEYEVMRDSNDNCITV 230 (1050)
T ss_pred HhcC--------CCCcEEEEEcccCceEEEEEEEEeCCCCEEEE
Confidence 6421 12468999999977899999999987655544
No 50
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.11 E-value=8.5e-05 Score=85.89 Aligned_cols=107 Identities=9% Similarity=0.110 Sum_probs=79.1
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEE--ecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQV--IESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~--~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
-+.++++++++ |||+| ++.. +.+ .+++.++++++| ||++|||-.-.|+| ||++..+.+|+.+++
T Consensus 120 K~~~r~~l~~~-----GVPv~--P~~~~~v~s--~eea~~~a~~iG-yPvVVKP~~GgGGr----Gv~vV~~~eEL~~a~ 185 (1146)
T PRK12999 120 KVAARNAAIKA-----GVPVI--PGSEGPIDD--IEEALEFAEEIG-YPIMLKASAGGGGR----GMRIVRSEEELEEAF 185 (1146)
T ss_pred HHHHHHHHHHC-----CCCCC--CCcccCCCC--HHHHHHHHHHhC-CCEEEEECCCCCCC----CeEEeCCHHHHHHHH
Confidence 45678889998 99987 4443 444 688888889998 89999998766666 899999999998887
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++.........+ -..++||++++..+|+-+.+..|..+.++.+
T Consensus 186 ~~a~~ea~~~fg----~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l 228 (1146)
T PRK12999 186 ERAKREAKAAFG----NDEVYLEKYVENPRHIEVQILGDKHGNVVHL 228 (1146)
T ss_pred HHHHHHHHhhcC----CCcEEEecCCCCCeEEEEEEEEECCCCEEEE
Confidence 775432111001 1358999999977888888888877665544
No 51
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.10 E-value=0.00011 Score=82.60 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCC----CHH-HHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIEST----NFD-ELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~----~~~-ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee 80 (423)
..-+.+|++|+++ |||+| ++...+.. +.+ ...+..+.++ +|++|||-..- -| -||.++.+.+|
T Consensus 567 ~DK~~~K~~l~~~-----GIpt~--~~~~~~~~~~~~~~~~~~~~~~~~lg-~P~iVKP~~~G--sS--~Gv~~v~~~~e 634 (809)
T PRK14573 567 MDKVLTKRFASDV-----GVPVV--PYQPLTLAGWKREPELCLAHIVEAFS-FPMFVKTAHLG--SS--IGVFEVHNVEE 634 (809)
T ss_pred cCHHHHHHHHHHC-----CCCCC--CEEEEechhcccChHHHHHHHHHhcC-CCEEEeeCCCC--CC--CCEEEECCHHH
Confidence 4456789999999 99999 76666421 112 2234566787 89999998752 23 38989999999
Q ss_pred HHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 81 AATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
..++.++.+.. . ..+|||+++..++|+-+++..|..+
T Consensus 635 l~~a~~~a~~~-----~-----~~vlVEe~i~~grEi~v~vl~~~~~ 671 (809)
T PRK14573 635 LRDKISEAFLY-----D-----TDVFVEESRLGSREIEVSCLGDGSS 671 (809)
T ss_pred HHHHHHHHHhc-----C-----CcEEEEeccCCCEEEEEEEEeCCCC
Confidence 99888876521 1 2489999988789999999988654
No 52
>PLN02735 carbamoyl-phosphate synthase
Probab=98.10 E-value=2.8e-05 Score=89.68 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=80.7
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
...|++|+++ |||+| ++..+++ .+++.++++++|.+|+||||....||+ ||.++.|.+|+.+++++.
T Consensus 146 ~~~k~~l~~~-----GIpvp--~~~~v~s--~eea~~~~~~iG~yPvVVKP~~~~GG~----Gv~iv~n~eEL~~a~~~a 212 (1102)
T PLN02735 146 ELFKQAMEKI-----GLKTP--PSGIATT--LDECFEIAEDIGEFPLIIRPAFTLGGT----GGGIAYNKEEFETICKAG 212 (1102)
T ss_pred HHHHHHHHHC-----CCCCC--CeeEeCC--HHHHHHHHHHhCCCCEEEEeCCCCCCC----ceEEECCHHHHHHHHHHH
Confidence 4567888888 99999 7788876 578888888887589999998766776 777889999999988876
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
+... ....++||+++.+.+|+-+.+..|..+.++.
T Consensus 213 ~~~s--------~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~ 247 (1102)
T PLN02735 213 LAAS--------ITSQVLVEKSLLGWKEYELEVMRDLADNVVI 247 (1102)
T ss_pred HhcC--------CCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence 5321 1256999999996689999999997665443
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.05 E-value=3.4e-05 Score=89.03 Aligned_cols=102 Identities=15% Similarity=0.249 Sum_probs=79.8
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+.-|++|+++ |||+| ++..+++ .+++.++++++| +|+||||..-.||+ |+.++.|++|+.+++++.
T Consensus 130 ~~~k~~l~~~-----Gipvp--~~~~v~s--~~e~~~~~~~ig-~PvVVKP~~g~gg~----Gv~iv~~~eeL~~a~~~~ 195 (1066)
T PRK05294 130 ELFKEAMKKI-----GLPVP--RSGIAHS--MEEALEVAEEIG-YPVIIRPSFTLGGT----GGGIAYNEEELEEIVERG 195 (1066)
T ss_pred HHHHHHHHHC-----CcCCC--CeeeeCC--HHHHHHHHHHcC-CCeEEEcCCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 3457888888 99999 8888876 578888888997 89999998655555 778889999999888765
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+... ....++||+++++.+|+-+.+.+|..+.++.+
T Consensus 196 ~~~s--------~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~ 231 (1066)
T PRK05294 196 LDLS--------PVTEVLIEESLLGWKEYEYEVMRDKNDNCIIV 231 (1066)
T ss_pred HhhC--------CCCeEEEEEcccCceEEEEEEEEcCCCCEEEE
Confidence 5321 12458999999977899999999987655443
No 54
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.05 E-value=0.00043 Score=68.69 Aligned_cols=97 Identities=22% Similarity=0.210 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEec-CCC-HHHH--HHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIE-STN-FDEL--AQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~-~~~-~~ea--~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (423)
+-+..|++|+++ |||+| ++..++ +.+ .+++ ..+...++ +|+||||-...+++ ||.+..|.+++.
T Consensus 105 dK~~~~~~l~~~-----gip~p--~~~~~~~~~~~~~~~~~~~~~~~~~-~P~vvKP~~~~~s~----Gv~~v~~~~el~ 172 (315)
T TIGR01205 105 DKLLTKLLWKAL-----GLPTP--DYIVLTQNRASADELECEQVAEPLG-FPVIVKPAREGSSV----GVSKVKSEEELQ 172 (315)
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEecccccchhhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHH
Confidence 456778899999 99999 777765 421 1222 13335676 89999998765545 688889999999
Q ss_pred HHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 83 TFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++++.... . ..++||++++ ++|+.+++..+..
T Consensus 173 ~~~~~~~~~-----~-----~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 173 AALDEAFEY-----D-----EEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred HHHHHHHhc-----C-----CcEEEEcCCC-CEEEEEEEECCCC
Confidence 888776421 1 3489999998 8999999987543
No 55
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.97 E-value=0.00029 Score=69.70 Aligned_cols=90 Identities=24% Similarity=0.218 Sum_probs=64.9
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+-.|++|+ . |||+| ++....+. . ....++ +|+|+||..-.+++ ||.++.|.+++.++.++
T Consensus 96 K~~~k~~l~-~-----~ip~p--~~~~~~~~--~----~~~~l~-~P~vvKP~~g~~s~----Gv~~v~~~~el~~~~~~ 156 (299)
T PRK14571 96 KLLTYRFLK-G-----TVEIP--DFVEIKEF--M----KTSPLG-YPCVVKPRREGSSI----GVFICESDEEFQHALKE 156 (299)
T ss_pred HHHHHHHHh-c-----CCCCC--CEEEEech--h----hhhhcC-CCEEEecCCCCCcC----CEEEECCHHHHHHHHHH
Confidence 344566666 5 88988 66666431 1 234566 89999998765555 88889999999888776
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
.+.. . ..++||++++ ++|+.+++..+..+
T Consensus 157 ~~~~-----~-----~~vlVEeyI~-G~E~sv~vl~~~~~ 185 (299)
T PRK14571 157 DLPR-----Y-----GSVIVQEYIP-GREMTVSILETEKG 185 (299)
T ss_pred HHhh-----C-----CcEEEEcccc-ceEEEEEEEcCCCC
Confidence 5421 1 3589999998 78999999987543
No 56
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=97.97 E-value=3.7e-05 Score=80.58 Aligned_cols=100 Identities=21% Similarity=0.164 Sum_probs=81.0
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
.=+|+++.+| |||+. .+...++ +++|.....+.+.+++|||++.++.|| ||.+..+.+|+-+++++|
T Consensus 110 ~fsK~fm~r~-----~IPTA--~y~~ft~--~e~a~sfi~~~~~~~~ViKAdGLAAGK----GViv~~~~~EA~eAv~sI 176 (788)
T KOG0237|consen 110 NFSKDFMHRH-----NIPTA--KYKTFTD--PEEAKSFIQSATDKALVIKADGLAAGK----GVIVAKSKEEAFEAVDSI 176 (788)
T ss_pred HHHHHHHHhc-----CCCcc--eeeeeCC--HHHHHHHHHhCCCcceEEeecccccCC----ceEeeccHHHHHHHHHHH
Confidence 3478999999 98887 6666666 588887777776678999999998788 999999999999999999
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+..... |..+ ..++|||++. +.|+.+=...|..
T Consensus 177 l~~~~f--g~AG--~tvViEE~LE-GeEvS~laftDG~ 209 (788)
T KOG0237|consen 177 LVKKVF--GSAG--KTVVIEELLE-GEEVSFLAFTDGY 209 (788)
T ss_pred Hhhhhh--cccc--ceEehhhhcC-cceEEEEEEecCc
Confidence 976653 3222 6789999998 7888887777865
No 57
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.95 E-value=4.5e-05 Score=84.57 Aligned_cols=92 Identities=22% Similarity=0.238 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEE-eCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVAL-NLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l-~~s~eea~~~a 85 (423)
.-..+|++|+++ |||+| ++..+.+ .+++.++++++| +|+|+||..-.+|| ||.+ ..|.+++.+++
T Consensus 214 DK~~tk~lL~~~-----GIPvP--~~~~v~s--~~~a~~~a~~iG-~PvVVKP~~G~~G~----GV~~~v~~~~el~~a~ 279 (727)
T PRK14016 214 DKELTKRLLAAA-----GVPVP--EGRVVTS--AEDAWEAAEEIG-YPVVVKPLDGNHGR----GVTVNITTREEIEAAY 279 (727)
T ss_pred CHHHHHHHHHHC-----CcCCC--CeeEeCC--HHHHHHHHHHcC-CCEEEEECCCCCCC----ceEEecCCHHHHHHHH
Confidence 345689999999 99999 7787776 588888899997 89999998644344 8888 57999998888
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEE
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVS 123 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~ 123 (423)
+..... + ..++||++++ +.|+-+.+.-
T Consensus 280 ~~a~~~-----~-----~~viVEe~I~-G~d~Rv~Vvg 306 (727)
T PRK14016 280 AVASKE-----S-----SDVIVERYIP-GKDHRLLVVG 306 (727)
T ss_pred HHHHHh-----C-----CeEEEEEecC-CceEEEEEEC
Confidence 766421 1 4589999998 7888876653
No 58
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.94 E-value=4.4e-05 Score=86.23 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=71.1
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEE-eCCHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVAL-NLDLAQAATFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l-~~s~eea~~~a~ 86 (423)
-+.+|++|+++ ||||| ++..+.+ .+++.++++++| +|+|+||..-.+|+ ||.+ ..|.+++.++++
T Consensus 214 K~~tk~lL~~~-----GIpvP--~~~~~~s--~~ea~~~~~~ig-~PvVVKP~~g~~G~----GV~l~v~s~~el~~a~~ 279 (864)
T TIGR02068 214 KDLTKEILSDA-----GVPVP--EGTVVQS--AEDAWEAAQDLG-YPVVIKPYDGNHGR----GVTINILTRDEIESAYE 279 (864)
T ss_pred HHHHHHHHHHc-----CcCCC--CEEEECC--HHHHHHHHHHcC-CCEEEEECCCCCcc----CEEEEeCCHHHHHHHHH
Confidence 46789999999 99999 7788876 588888888997 89999999754433 8888 479999988887
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEE
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIV 122 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~ 122 (423)
..... . ..++||++++ ++|+-+.+.
T Consensus 280 ~a~~~-----~-----~~vlVEefI~-G~e~rvlVv 304 (864)
T TIGR02068 280 AAVEE-----S-----SGVIVERFIT-GRDHRLLVV 304 (864)
T ss_pred HHHhh-----C-----CcEEEEEecc-CCEEEEEEE
Confidence 66421 1 3589999998 688877654
No 59
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.92 E-value=0.00042 Score=70.55 Aligned_cols=95 Identities=15% Similarity=0.238 Sum_probs=69.7
Q ss_pred HHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHh
Q 014512 10 DSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (423)
.-|++|+++ |||+| +. ..+ +++ ++ +|+||||....|+| ||.++.|.+|+.+++++++
T Consensus 126 ~~k~~L~~a-----GIp~p--~~--~~~--~~~-------i~-~PvIVKp~~g~ggk----Gv~i~~s~~El~~~~~~l~ 182 (358)
T PRK13278 126 KERKLLEEA-----GIRIP--RK--YES--PED-------ID-RPVIVKLPGAKGGR----GYFIAKSPEEFKEKIDKLI 182 (358)
T ss_pred HHHHHHHHc-----CCCCC--CE--eCC--HHH-------cC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHHHHHHH
Confidence 356788888 99999 43 333 233 33 79999997666665 9999999999999999987
Q ss_pred cccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC-CCeeeee
Q 014512 90 GKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL-GCSVSFS 133 (423)
Q Consensus 90 ~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~-~p~il~s 133 (423)
.+... + ....++|||++. |.|+++-+...+- +.+-++|
T Consensus 183 ~~~~~--~---~~~~~iIEEfI~-G~e~sv~~f~s~~~~~~e~l~ 221 (358)
T PRK13278 183 ERGLI--T---EVEEAIIQEYVV-GVPYYFHYFYSPIKNRLELLG 221 (358)
T ss_pred hcccc--C---CCCeEEEEecCC-CcEEEEEEEEeccCCeEEEEe
Confidence 54321 1 246799999998 7899999988763 5554444
No 60
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.91 E-value=0.00032 Score=81.05 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=73.8
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+.-+++|+++ |||+| ++..+++ .+++.+.+..+| ||+||||....|+| ||.+..|.+|+.++.++.
T Consensus 672 ~~f~~ll~~~-----GIp~P--~~~~~~s--~ee~~~~~~~ig-yPvVVKP~~~~Gg~----gv~iv~~~eeL~~~l~~~ 737 (1068)
T PRK12815 672 DRFYQLLDEL-----GLPHV--PGLTATD--EEEAFAFAKRIG-YPVLIRPSYVIGGQ----GMAVVYDEPALEAYLAEN 737 (1068)
T ss_pred HHHHHHHHHc-----CcCCC--CeEEeCC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHHh
Confidence 3446777887 99999 7888877 588888888997 89999997766666 888999999998888776
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
. . . -..++||++++ +.|+-+.+..|..
T Consensus 738 ~---s---~----~~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 738 A---S---Q----LYPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred h---c---C----CCCEEEEEeec-CceEEEEEEEcCC
Confidence 1 0 1 13489999996 6799999988864
No 61
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.90 E-value=0.00014 Score=68.41 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHchhCCCCCccCCCceEEecCCCHHHH--HHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcc
Q 014512 14 LLKEHFQRLSGRELPIKSAQVIESTNFDEL--AQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGK 91 (423)
Q Consensus 14 lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea--~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (423)
||++. |||+| ++.++...+.... .+....++ +|++|||-.. |-+. ||..+.|.++...+.++...
T Consensus 1 l~~~~-----gI~tp--~~~~~~~~~~~~~~~~~~~~~l~-~P~~VKP~~~--GsS~--Gi~~v~~~~el~~ai~~~~~- 67 (203)
T PF07478_consen 1 LLKSA-----GIPTP--PYVVVKKNEDDSDSIEKILEDLG-FPLFVKPASE--GSSI--GISKVHNEEELEEAIEKAFK- 67 (203)
T ss_dssp HHHHT-----T-BB---SEEEEETTSHHHHHHHHHHHHHS-SSEEEEESST--STTT--TEEEESSHHHHHHHHHHHTT-
T ss_pred Chhhc-----CCCCC--CEEEEecccccchhHHHHHhhcC-CCEEEEECCC--CccE--EEEEcCCHHHHHHHHHHHhh-
Confidence 56777 99999 8888877543322 24566787 8999999864 2222 67888999999988887642
Q ss_pred cchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 92 EMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 92 ~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
. . ..+|||++++ ++|+-+|+.-+..
T Consensus 68 -~---~-----~~vlVEefI~-G~E~tv~vl~~~~ 92 (203)
T PF07478_consen 68 -Y---D-----DDVLVEEFIS-GREFTVGVLGNGE 92 (203)
T ss_dssp -T---H-----SEEEEEE--S-SEEEEEEEEESSS
T ss_pred -h---c-----ceEEEEeeec-ccceEEEEEecCC
Confidence 1 1 4699999995 9999999998654
No 62
>PRK07206 hypothetical protein; Provisional
Probab=97.86 E-value=0.00015 Score=74.89 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=74.5
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCC---cEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSC---KLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~---pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
-+..+++|+++ |||+| ++..+.+ .+++.+.++.+| + |+||||-.-.|++ ||.++.|.+|+.++
T Consensus 109 K~~~r~~l~~~-----gi~~p--~~~~~~~--~~e~~~~~~~~g-~~~~P~VvKP~~g~gs~----gv~~v~~~~el~~~ 174 (416)
T PRK07206 109 KAEMINALAEA-----GLPAA--RQINTAD--WEEAEAWLRENG-LIDRPVVIKPLESAGSD----GVFICPAKGDWKHA 174 (416)
T ss_pred HHHHHHHHHHc-----CCCcc--cEEecCC--HHHHHHHHHhcC-CCCCCEEEeCCCCCCCC----CEEEeCCHHHHHHH
Confidence 45567778888 99999 7777766 578877777776 5 9999998766666 89999999999999
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
++++++..-. .+ ..-..++||++++ +.|+.+.+..+
T Consensus 175 ~~~~~~~~~~-~~--~~~~~~lvEe~i~-G~E~sv~~~~~ 210 (416)
T PRK07206 175 FNAILGKANK-LG--LVNETVLVQEYLI-GTEYVVNFVSL 210 (416)
T ss_pred HHHHHhcccc-CC--CCCCeEEEEEccc-cEEEEEEEEEE
Confidence 9888753210 01 1125799999998 78998877653
No 63
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.84 E-value=0.00013 Score=76.23 Aligned_cols=95 Identities=21% Similarity=0.163 Sum_probs=68.8
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceE-EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEe----CCHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQ-VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALN----LDLAQAA 82 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~-~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~----~s~eea~ 82 (423)
-+.+|++|.++ |||+| +.+ .+.+ .+|+..++.+++ +|+||||...+|+| ||.++ .+.+++.
T Consensus 106 K~~~k~~l~~~-----gIptp--~~~~~~~~--~~e~~~~~~~~~-~PvVVKP~~~sggk----GV~v~~~~~~~~~ea~ 171 (435)
T PRK06395 106 KMFMRYLMERH-----NIPGN--INFNACFS--EKDAARDYITSM-KDVAVKPIGLTGGK----GVKVTGEQLNSVDEAI 171 (435)
T ss_pred HHHHHHHHHHC-----CcCCC--cccceeCC--hHHHHHHHHhhC-CCEEEEeCCCCCCC----CeEEecCchhhHHHHH
Confidence 35568888998 99986 333 4434 367777667776 89999999998888 88887 3446666
Q ss_pred HHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 83 TFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
.++.++... + ..++|||++. +.|+-+-+..|...
T Consensus 172 ~~~~~~~~~-----~-----~~viIEEfl~-G~E~Svd~~~dg~~ 205 (435)
T PRK06395 172 RYAIEILDR-----D-----GVVLIEKKMT-GEEFSLQAFSDGKH 205 (435)
T ss_pred HHHHHHhCC-----C-----CcEEEEeecC-CceEEEEEEEcCCe
Confidence 666665311 1 3489999997 77999999987654
No 64
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=97.82 E-value=0.00014 Score=74.00 Aligned_cols=105 Identities=18% Similarity=0.285 Sum_probs=79.2
Q ss_pred HHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhc
Q 014512 11 SKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLG 90 (423)
Q Consensus 11 ak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~ 90 (423)
.|+.|++. |+|+| ..++++ .+++.+.+..+| +||+|||-.-.||. |+.++.|.+|..+.....+.
T Consensus 120 fke~m~ei-----gi~~P---~~~~~~--~~e~~~~~~~ig-~PvIVrP~~~lGG~----G~~i~~n~eel~~~~~~~l~ 184 (400)
T COG0458 120 FKEAMREI-----GIPVP---SRIAHS--VEEADEIADEIG-YPVIVKPSFGLGGS----GGGIAYNEEELEEIIEEGLR 184 (400)
T ss_pred HHHHHHHc-----CCCCC---cccccc--HHHHhhhHhhcC-CCEEEecCcCCCCC----ceeEEeCHHHHHHHHHhccc
Confidence 45666666 99999 335555 589999999998 89999988765544 55667899999888877764
Q ss_pred ccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeeecCCCc
Q 014512 91 KEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGI 138 (423)
Q Consensus 91 ~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s~~GGv 138 (423)
. ..++.+|+|+.+...+|+..-+.+|...-+|+.+..+-.
T Consensus 185 ~--------s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~ 224 (400)
T COG0458 185 A--------SPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENL 224 (400)
T ss_pred c--------CccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcc
Confidence 3 245789999999988999999999998544444334443
No 65
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.82 E-value=0.00013 Score=73.42 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCCH--HHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNF--DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~--~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
..-+.+|++|+++ |||+| ++....+.+. .....+.+.++ +|+||||-...+++ ||.++.+.++..+
T Consensus 122 ~DK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~~~~~~~-~P~vVKP~~~gsS~----Gv~~v~~~~el~~ 189 (333)
T PRK01966 122 MDKILTKRLLAAA-----GIPVA--PYVVLTRGDWEEASLAEIEAKLG-LPVFVKPANLGSSV----GISKVKNEEELAA 189 (333)
T ss_pred hCHHHHHHHHHHc-----CCCCC--CEEEEeccccchhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHHH
Confidence 3556789999999 99999 7777655321 11234456676 89999997653333 7888899999998
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
+.++.... + ..++||++++ ++|+-+++..|
T Consensus 190 a~~~~~~~-----~-----~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 190 ALDLAFEY-----D-----RKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HHHHHHhc-----C-----CcEEEEcCcC-CEEEEEEEECC
Confidence 88876521 1 3589999998 79999999876
No 66
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.81 E-value=0.00011 Score=80.99 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=67.8
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeC---CHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNL---DLAQAATF 84 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~---s~eea~~~ 84 (423)
-.-+|++|++. ||||| ++.++++ .+++.++...++++|+||||.....|+ ||.+.. +.+++.++
T Consensus 476 K~~TK~iL~~a-----GIPVP--~g~~~~~--~~~a~~~~~~~~g~PVVVKP~~g~~G~----GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 476 KVVTKKVLAEA-----GFRVP--FGDEFSS--QALALEAFSLFENKAIVVKPKSTNYGL----GITIFKNGFTLEDFQEA 542 (737)
T ss_pred HHHHHHHHHHc-----CcCCC--CEEEECC--HHHHHHHHHHhcCCCEEEeeCCCCCcC----CeEEecCcCCHHHHHHH
Confidence 35679999999 99999 7777766 366666666665589999998765555 787753 46777776
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
.+.... . -..++||++++ |.|+.+.+.-+
T Consensus 543 l~~A~~------~----~~~VLVEefI~-G~EyRv~VIg~ 571 (737)
T TIGR01435 543 LNIAFS------E----DSSVIIEEFLP-GTEYRFFVLND 571 (737)
T ss_pred HHHHHh------c----CCeEEEEeccc-CCEEEEEEECC
Confidence 655321 1 13599999998 78999977744
No 67
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.80 E-value=0.00019 Score=71.55 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=68.9
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHH--hhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQ--KEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~--~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+..+++|+++ |||+| ++...++ .+++.+ ...+++ +|+|+||..-.+++ ||.+..|.+++.++.+
T Consensus 113 ~~~~~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~~~-~P~viKP~~g~~s~----gv~~v~~~~el~~~~~ 178 (326)
T PRK12767 113 WLTYEFLKEN-----GIPTP--KSYLPES--LEDFKAALAKGELQ-FPLFVKPRDGSASI----GVFKVNDKEELEFLLE 178 (326)
T ss_pred HHHHHHHHHc-----CCCCC--CEEcccC--HHHHHhhhhcccCC-CCEEEEeCCCCCcc----CeEEeCCHHHHHHHHH
Confidence 4456778888 99999 7777766 467666 456776 89999997655444 7888889998877655
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCe
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCS 129 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~ 129 (423)
+. ..++||++++ +.|+.+.+..|..+-+
T Consensus 179 ~~--------------~~~lvqeyi~-G~e~~v~~~~~~~G~~ 206 (326)
T PRK12767 179 YV--------------PNLIIQEFIE-GQEYTVDVLCDLNGEV 206 (326)
T ss_pred hC--------------CCeEEEeccC-CceEEEEEEEcCCCCE
Confidence 32 1589999996 7899999999865533
No 68
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.80 E-value=0.00017 Score=81.88 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=75.2
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..|++|+++ |||+| ++..+++ .+++.+.+..++ +|+||||-.-.|++ ||.++.|.+|+.+++++
T Consensus 108 K~~~r~~L~~~-----GIp~P--~~~~v~~--~~e~~~~~~~~~-~PvVVKP~~g~gS~----GV~~v~~~~el~~a~~~ 173 (887)
T PRK02186 108 KKRLARTLRDH-----GIDVP--RTHALAL--RAVALDALDGLT-YPVVVKPRMGSGSV----GVRLCASVAEAAAHCAA 173 (887)
T ss_pred HHHHHHHHHHc-----CCCCC--CEEEeCC--HHHHHHHHHhCC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHHH
Confidence 35567788888 99999 7787776 477877777887 89999998766666 89999999999988887
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
+.... -..++||++++ +.|+.+.+..+..+
T Consensus 174 ~~~~~---------~~~~lvEEfI~-G~E~sVe~i~~~g~ 203 (887)
T PRK02186 174 LRRAG---------TRAALVQAYVE-GDEYSVETLTVARG 203 (887)
T ss_pred HHhcC---------CCcEEEeeccc-CCcEEEEEEEECCc
Confidence 75321 13589999998 68999988877543
No 69
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.80 E-value=0.0015 Score=66.00 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
.-...|++|+++ |||+| ++....+. ++. ....++ +|+||||-...+.+ ||.++.|.+|..++.+
T Consensus 132 DK~~~k~~l~~~-----GIp~p--~~~~~~~~--~~~--~~~~l~-~P~iVKP~~~gsS~----Gv~~v~~~~eL~~a~~ 195 (343)
T PRK14568 132 DKSLAYIVAKNA-----GIATP--AFWTVTAD--ERP--DAATLT-YPVFVKPARSGSSF----GVSKVNSADELDYAIE 195 (343)
T ss_pred CHHHHHHHHHHc-----CcCcC--CEEEEECC--chh--hhhhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 345678999999 99999 77777653 221 134576 89999997653333 8888899999988877
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+.... + ..++||++++ ++|+-+++..|+.
T Consensus 196 ~a~~~-----~-----~~vlVEe~I~-G~E~sv~vl~~~~ 224 (343)
T PRK14568 196 SARQY-----D-----SKVLIEEAVV-GSEVGCAVLGNGA 224 (343)
T ss_pred HHHhc-----C-----CcEEEECCcC-CEEEEEEEEcCCC
Confidence 65321 1 3589999998 7899999887654
No 70
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.77 E-value=0.00024 Score=70.43 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
.-+..+++|+++ |||+| ++.++.+ .+++.+..++++++|+|+||-.-.+++ ||.+..+.++...+.+
T Consensus 99 dK~~~~~~l~~~-----gip~P--~t~~~~~--~~~~~~~~~~~~~~P~VvKP~~g~~g~----GV~~v~~~~~~~~~~~ 165 (300)
T PRK10446 99 DKLRSMQLLARQ-----GIDLP--VTGIAHS--PDDTSDLIDMVGGAPLVVKLVEGTQGI----GVVLAETRQAAESVID 165 (300)
T ss_pred cHHHHHHHHHHc-----CCCCC--CEEEeCC--HHHHHHHHHHhCCCCEEEEECCCCCcc----cEEEEcCHHHHHHHHH
Confidence 345678899999 99999 7777765 466777676764489999998765555 8888888888776655
Q ss_pred HHhcccchhccCCcceeEEEEEeecC--CCceEEEEEEEe
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIP--HNEEFYLNIVSE 124 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~--~~~E~ylgi~~D 124 (423)
.+... . ..++||++++ .+.|+.+.+.-+
T Consensus 166 ~~~~~-----~-----~~~lvQe~I~~~~g~d~rv~vig~ 195 (300)
T PRK10446 166 AFRGL-----N-----AHILVQEYIKEAQGCDIRCLVVGD 195 (300)
T ss_pred HHHhc-----C-----CCEEEEeeeccCCCceEEEEEECC
Confidence 44211 1 2489999996 478999987643
No 71
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.77 E-value=0.00024 Score=75.32 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHH-------
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLA------- 79 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e------- 79 (423)
+-+.+|++|+++ |||+|. .+...++ .+++.+.++.+ +|+||||....++| ||.++.|.+
T Consensus 109 dK~~~K~~l~~~-----gIpt~~-~~~~~~~--~~ea~~~~~~~--~PvVVKP~~~aggk----GV~iv~~~~e~~~~~~ 174 (486)
T PRK05784 109 SKVWARELMWKY-----SIPGRL-RYKVFYD--VEEAAKFIEYG--GSVAIKPARQAGGK----GVKVIADLQAYLSQEK 174 (486)
T ss_pred CHHHHHHHHHHc-----CcCCCc-cceEeCC--HHHHHHHHhhc--CCEEEeeCCCCCCC----CEEEECChhHhcchhH
Confidence 445678999999 999851 2444454 57887777554 49999999998888 999998876
Q ss_pred -HHH-HHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 80 -QAA-TFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 80 -ea~-~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
++. +++++++..... .+ ..-..++|||++. +.|+-+.+..|..
T Consensus 175 ~ea~~~a~~~~~~~~~~-~g--~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 175 REALTKSVNDIKEGSAY-YK--DVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred HHHHHHHHHHHHHhHhh-cc--CCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 333 445565532110 11 1125699999998 7899999988754
No 72
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.76 E-value=0.0002 Score=72.57 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCC----CHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIEST----NFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQA 81 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~----~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea 81 (423)
..-+..|++|+++ |||+| ++...... +.+++....+.++ +|+||||....+.+ ||.++.|.+|+
T Consensus 129 ~DK~~~k~~l~~~-----GI~~p--~~~~~~~~~~~~~~~~~~~~~~~l~-~PvvVKP~~ggsS~----GV~~v~~~~el 196 (347)
T PRK14572 129 MDKTRANQIFLQS-----GQKVA--PFFELEKLKYLNSPRKTLLKLESLG-FPQFLKPVEGGSSV----STYKITNAEQL 196 (347)
T ss_pred hCHHHHHHHHHHc-----CCCCC--CEEEEEccccccChHHHHHHHHhcC-CCEEEecCCCCCCC----CEEEECCHHHH
Confidence 3456789999999 99999 66665421 1233334455676 89999997642223 78888999999
Q ss_pred HHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 82 ATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
..+.++++.. . ..+|||++++ ++|+-+++..|
T Consensus 197 ~~a~~~~~~~-----~-----~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 197 MTLLALIFES-----D-----SKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred HHHHHHHHhc-----C-----CCEEEEcCcc-cEEEEEEEEeC
Confidence 9888876421 1 2489999998 79999999865
No 73
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.71 E-value=0.00028 Score=81.60 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=76.1
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+..+++|++. |||+| ++..+.+ .+++.+.+.++| +|+||||....|++ ||.++.|.+|+.++.++.
T Consensus 671 ~~~~~~L~~~-----GIp~P--~~~~~~s--~ee~~~~~~~ig-yPvvVKP~~~~Gg~----Gv~iv~~~eeL~~~~~~a 736 (1066)
T PRK05294 671 ERFSKLLEKL-----GIPQP--PNGTATS--VEEALEVAEEIG-YPVLVRPSYVLGGR----AMEIVYDEEELERYMREA 736 (1066)
T ss_pred HHHHHHHHHc-----CcCCC--CeEEECC--HHHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHH
Confidence 3447778888 99999 8888876 588888888897 89999997767777 888999999999888876
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
.... + -..++||++++...|+-+.+..|..
T Consensus 737 ~~~s-----~---~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 737 VKVS-----P---DHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred HhhC-----C---CCcEEEEecCCCCEEEEEEEEecCC
Confidence 5321 1 1348999999866699999988765
No 74
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.69 E-value=0.00021 Score=79.46 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEe---CCHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALN---LDLAQAAT 83 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~---~s~eea~~ 83 (423)
.-+.+|++|+++ |||+| ++.++.+ .+++..+..++.++|+||||....+|+ ||.+. .+.+++.+
T Consensus 488 DK~~tk~lL~~~-----GIpvP--~~~~~~~--~e~a~~~~~~~~g~PvVVKP~~g~~G~----GV~~~~~~~~~eel~~ 554 (752)
T PRK02471 488 NKVVTKKILAEA-----GFPVP--AGDEFTS--LEEALADYSLFADKAIVVKPKSTNFGL----GISIFKEPASLEDYEK 554 (752)
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEcC--HHHHHHHHHHhcCCCEEEEECCCCCcC----CeEEecCcCCHHHHHH
Confidence 345679999999 99999 7777766 477777666653489999999876666 88764 47788887
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEE
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIV 122 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~ 122 (423)
+.+..... + ..++||++++ ++|+.+.+.
T Consensus 555 A~~~a~~~-----~-----~~vlVEEfI~-G~E~Rv~Vi 582 (752)
T PRK02471 555 ALEIAFRE-----D-----SSVLVEEFIV-GTEYRFFVL 582 (752)
T ss_pred HHHHHHhc-----C-----CcEEEEeccc-CCEEEEEEE
Confidence 77665311 1 3489999997 889988665
No 75
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.62 E-value=0.00048 Score=70.41 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCC----CHHHHHH-hhcccCCCcEEEeeccccCcccccCeeEEeCCHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIEST----NFDELAQ-KEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~----~~~ea~~-~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee 80 (423)
..-+.+|++|+++ |||+| ++...+.. +.+++.+ +...+| +|++|||...-+ |. ||.++.|.+|
T Consensus 128 ~DK~~tK~~l~~~-----GIpt~--p~~~~~~~~~~~~~~~~~~~~~~~lg-~PviVKP~~~Gs--S~--Gv~~v~~~~e 195 (364)
T PRK14570 128 INKYFCKLLLKSF-----NIPLV--PFIGFRKYDYFLDKEGIKKDIKEVLG-YPVIVKPAVLGS--SI--GINVAYNENQ 195 (364)
T ss_pred HCHHHHHHHHHHc-----CCCCC--CEEEEeccccccchHHHHHHHHHhcC-CCEEEEeCCCCC--CC--cEEEeCCHHH
Confidence 3456789999999 99998 65554321 1244443 335677 899999976422 22 7888899999
Q ss_pred HHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeC
Q 014512 81 AATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSER 125 (423)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~ 125 (423)
+.++.++.+.. . ..++||+++. ++|+-+++.-|.
T Consensus 196 l~~al~~a~~~-----~-----~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 196 IEKCIEEAFKY-----D-----LTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred HHHHHHHHHhC-----C-----CCEEEECCcC-CEEEEEEEECCC
Confidence 99888876521 1 3489999998 899999998554
No 76
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.003 Score=63.84 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=70.6
Q ss_pred HHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcc
Q 014512 12 KRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGK 91 (423)
Q Consensus 12 k~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (423)
|++|++. ||||| +++.+.+ .+|+..++.++| +|.|||.--. |--|| |..+.++.++....+.....
T Consensus 104 K~~l~~~-----Gi~va--~~~~v~~--~~el~~~~~~~g-~p~VlKtr~g-GYDGk--GQ~~i~~~~~~~~~~~~~~~- 169 (375)
T COG0026 104 KQFLDKA-----GLPVA--PFQVVDS--AEELDAAAADLG-FPAVLKTRRG-GYDGK--GQWRIRSDADLELRAAGLAE- 169 (375)
T ss_pred HHHHHHc-----CCCCC--CeEEeCC--HHHHHHHHHHcC-CceEEEeccc-cccCC--CeEEeeCcccchhhHhhhhc-
Confidence 8888888 99999 8899987 588999999998 8999997643 22222 66666666666654433221
Q ss_pred cchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 92 EMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 92 ~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+ + ..++|++++..+|+.+=+.++++|-+..+
T Consensus 170 -----~--~---~~vlE~fV~F~~EiSvi~aR~~~G~~~~y 200 (375)
T COG0026 170 -----G--G---VPVLEEFVPFEREISVIVARSNDGEVAFY 200 (375)
T ss_pred -----c--C---ceeEEeecccceEEEEEEEEcCCCCEEEe
Confidence 1 1 12899999999999888888887766555
No 77
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.57 E-value=0.00057 Score=66.56 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=64.3
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
...+++|+++ |||+| ++..+.+ .+++..+...++ +|+|+||..-.+|+ ||.+..+.+++.+..+..
T Consensus 89 ~~~~~~l~~~-----gip~P--~t~~~~~--~~~~~~~~~~~~-~P~vvKP~~g~~g~----gv~~v~~~~~l~~~~~~~ 154 (280)
T TIGR02144 89 IFTYLKLAKA-----GVPTP--RTYLAFD--REAALKLAEALG-YPVVLKPVIGSWGR----LVALIRDKDELESLLEHK 154 (280)
T ss_pred HHHHHHHHHC-----CcCCC--CeEeeCC--HHHHHHHHHHcC-CCEEEEECcCCCcC----CEEEECCHHHHHHHHHHH
Confidence 4467788888 99999 7777765 577777777787 79999998765555 688888888877655432
Q ss_pred hcccchhccCCcceeEEEEEeecCC-CceEEEEEE
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPH-NEEFYLNIV 122 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~-~~E~ylgi~ 122 (423)
.. + .+ ..-..+++|++++. +.|+.+.+.
T Consensus 155 ~~--~--~~--~~~~~~ivQefI~~~~~d~~v~vi 183 (280)
T TIGR02144 155 EV--L--GG--SQHKLFYIQEYINKPGRDIRVFVI 183 (280)
T ss_pred Hh--h--cC--CcCCeEEEEcccCCCCCceEEEEE
Confidence 10 1 01 01135899999984 567666543
No 78
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=97.53 E-value=0.00029 Score=65.19 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=48.7
Q ss_pred HHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHh
Q 014512 10 DSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (423)
-...+|+++ |||+| ++.++.+ .+++.+..++++++|+|+||..-..|+ ||.+..+.+++....+...
T Consensus 6 ~~~~~l~~~-----gipvP--~t~~~~~--~~~~~~~~~~~~~~p~ViKp~~g~~G~----gV~~i~~~~~~~~~l~~~~ 72 (190)
T PF08443_consen 6 LTLQLLAKA-----GIPVP--ETRVTNS--PEEAKEFIEELGGFPVVIKPLRGSSGR----GVFLINSPDELESLLDAFK 72 (190)
T ss_dssp HHHHHHHHT-----T-------EEEESS--HHHHHHHHHHH--SSEEEE-SB-----------EEEESHCHHHHHHH---
T ss_pred HHHHHHHHC-----CcCCC--CEEEECC--HHHHHHHHHHhcCCCEEEeeCCCCCCC----EEEEecCHHHHHHHHHHHH
Confidence 357889999 99999 8888877 689888888883489999996544344 8888888888876655432
Q ss_pred cccchhccCCcceeEEEEEeecCCCc--eEEEEEE
Q 014512 90 GKEMEMSECKGPITTFIIEPFIPHNE--EFYLNIV 122 (423)
Q Consensus 90 ~~~~~~~g~~~~v~~vlVe~~~~~~~--E~ylgi~ 122 (423)
.. . ..+++|++++... ++-+-+.
T Consensus 73 ~~-----~-----~~~~~Q~fI~~~~g~d~Rv~Vi 97 (190)
T PF08443_consen 73 RL-----E-----NPILVQEFIPKDGGRDLRVYVI 97 (190)
T ss_dssp -------T-----TT-EEEE----SS---EEEEEE
T ss_pred hc-----c-----CcceEeccccCCCCcEEEEEEE
Confidence 11 1 2358999998643 6655443
No 79
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.45 E-value=0.0014 Score=63.37 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=62.3
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..+++|+++ |||+| ++..+.+ .+++.+...+++ +|+|+||..-.+|+ ||.+..+.+++.+..+.
T Consensus 89 K~~~~~~l~~~-----gi~~P--~t~~~~~--~~~~~~~~~~~~-~p~vvKP~~g~~g~----gv~~i~~~~~l~~~~~~ 154 (277)
T TIGR00768 89 KFLTSQLLAKA-----GLPQP--RTGLAGS--PEEALKLIEEIG-FPVVLKPVFGSWGR----LVSLARDKQAAETLLEH 154 (277)
T ss_pred HHHHHHHHHHC-----CCCCC--CEEEeCC--HHHHHHHHHhcC-CCEEEEECcCCCCC----ceEEEcCHHHHHHHHHH
Confidence 34567888888 99999 7777766 577777777887 79999998765555 78888888888766654
Q ss_pred HhcccchhccCCcceeEEEEEeecCCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHN 114 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~ 114 (423)
+... +. .-..++||++++..
T Consensus 155 ~~~~-----~~--~~~~~lvQe~I~~~ 174 (277)
T TIGR00768 155 FEQL-----NG--PQNLFYVQEYIKKP 174 (277)
T ss_pred HHHh-----cc--cCCcEEEEeeecCC
Confidence 4211 10 11458999999953
No 80
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00031 Score=69.04 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=62.1
Q ss_pred CCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCccee
Q 014512 24 GRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPIT 103 (423)
Q Consensus 24 GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~ 103 (423)
|+|+. ++..+.+ .+|..++++.+| +|+|+||.....|| |-.+.++++++..+++.-.. |..+.-.
T Consensus 126 glpTs--~Y~fa~s--~~e~~~a~~~iG-fPcvvKPvMSSSGk----Gqsvv~~~e~ve~AW~~A~~------g~R~~~~ 190 (394)
T COG0027 126 GLPTS--KYRFADS--LEELRAAVEKIG-FPCVVKPVMSSSGK----GQSVVRSPEDVEKAWEYAQQ------GGRGGSG 190 (394)
T ss_pred CCCCc--ccccccc--HHHHHHHHHHcC-CCeecccccccCCC----CceeecCHHHHHHHHHHHHh------cCCCCCC
Confidence 76555 7888877 699999999998 89999999886666 44567799999888776542 2223346
Q ss_pred EEEEEeecCCCceEEE
Q 014512 104 TFIIEPFIPHNEEFYL 119 (423)
Q Consensus 104 ~vlVe~~~~~~~E~yl 119 (423)
.|+||++++...|+-+
T Consensus 191 RVIVE~fv~fd~EiTl 206 (394)
T COG0027 191 RVIVEEFVKFDFEITL 206 (394)
T ss_pred cEEEEEEecceEEEEE
Confidence 7999999998777654
No 81
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.28 E-value=0.0016 Score=70.11 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEE-eCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVAL-NLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l-~~s~eea~~~a 85 (423)
+-..+|++|++. ||||| ++..+.+ .+++.+.++++| |+||||..-.+|| ||.+ ..+.+++.++.
T Consensus 297 DK~~tk~lL~~a-----GIpVP--~~~~~~~--~~~~~~~~~~~G--~vVVKP~~G~~G~----Gv~v~v~~~~eL~~a~ 361 (547)
T TIGR03103 297 DKRLTRRLVSEA-----GLQVP--EQQLAGN--GEAVEAFLAEHG--AVVVKPVRGEQGK----GISVDVRTPDDLEAAI 361 (547)
T ss_pred CHHHHHHHHHHc-----CcCCC--CEEEECC--HHHHHHHHHHhC--CEEEEECCCCCCc----CeEEecCCHHHHHHHH
Confidence 345689999999 99999 7788776 577888888886 6999997655555 7877 47888888777
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEE
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIV 122 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~ 122 (423)
+..... + ..++||++++ +.|+.+.+.
T Consensus 362 ~~a~~~-----~-----~~vlvEe~i~-G~d~Rv~Vi 387 (547)
T TIGR03103 362 AKARQF-----C-----DRVLLERYVP-GEDLRLVVI 387 (547)
T ss_pred HHHHhc-----C-----CcEEEEEecc-CCeEEEEEE
Confidence 665321 1 3589999997 778887555
No 82
>PLN02522 ATP citrate (pro-S)-lyase
Probab=97.25 E-value=0.0037 Score=67.56 Aligned_cols=127 Identities=11% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~-~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+||+++-.|+++...+|.+...|. -..-++-+||++. .-.+.+.++.+.+ ||++++|++.. .|+-. .
T Consensus 167 pG~VgiVSqSGtL~~ei~~~~~~~Gl--G~S~~VsiGnd~~~g~~~~D~L~~~~~----Dp~Tk~IvlygEiGg~~-e-- 237 (608)
T PLN02522 167 PGSVGFVSKSGGMSNEMYNVIARVTD--GIYEGIAIGGDVFPGSTLSDHVLRFNN----IPQIKMIVVLGELGGRD-E-- 237 (608)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCC--CeEEEEEeCCCCCCCCCHHHHHHHHhc----CCCCCEEEEEEecCchh-H--
Confidence 69999999999999999999998643 3566788899886 2346677777666 99999998888 56642 2
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHH----HHH---------------HHHHhhhhhcCCceeecCCCCC
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQ----RGL---------------AKMRALAEEIGLPIEVYGPEAT 407 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~----~a~---------------~~l~~~~~~~Gip~~~~g~~~t 407 (423)
+.+++++++.. .+||||+...|.++. .++ +....+.+++|+... ++
T Consensus 238 -----~~f~ea~~~a~-----~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv-----~s 302 (608)
T PLN02522 238 -----YSLVEALKQGK-----VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVP-----TS 302 (608)
T ss_pred -----HHHHHHHHHhc-----CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEe-----CC
Confidence 44555666643 469999998887761 000 223334448999765 78
Q ss_pred HHHHHHHHHHHH
Q 014512 408 MTGICKQAIECI 419 (423)
Q Consensus 408 ~~~av~~~v~~~ 419 (423)
++|....+.+..
T Consensus 303 ~~El~~~~~~~~ 314 (608)
T PLN02522 303 FEALEAAIKETF 314 (608)
T ss_pred HHHHHHHHHHHH
Confidence 888776655443
No 83
>PRK06849 hypothetical protein; Provisional
Probab=97.14 E-value=0.013 Score=60.05 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=54.6
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+.-++++++. |||+| +....++ .+++.+...+..++|+|+||..-.+++ ||.+..+.+.. +.+
T Consensus 118 ~~~~~~~~~~-----GipvP--~t~~v~~--~~~l~~~~~~~~~~P~vlKP~~~~~~~----~v~~~~~~~~l----~~~ 180 (389)
T PRK06849 118 WEFAEQARSL-----GLSVP--KTYLITD--PEAIRNFMFKTPHTPYVLKPIYSRFVR----RVDLLPKEAAL----KEL 180 (389)
T ss_pred HHHHHHHHHc-----CCCCC--CEEEeCC--HHHHHHHhhcCCCCcEEEEeCcccCCC----eEEEecCHHHh----ccc
Confidence 4456677777 99999 8788876 477776666652389999997644333 66665552211 111
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEE
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVS 123 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~ 123 (423)
.. ..-..++|||+++ +.|+.+-...
T Consensus 181 ---~~------~~~~~~ivQe~I~-G~e~~~~~~~ 205 (389)
T PRK06849 181 ---PI------SKDNPWVMQEFIQ-GKEYCSYSIV 205 (389)
T ss_pred ---cc------CCCCCeEEEEEec-CCeEEEEEEE
Confidence 11 0113489999999 5676554443
No 84
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.10 E-value=0.0042 Score=63.05 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=68.6
Q ss_pred HHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccC--cccccCeeEEeCCHHHHHHHHHHHh
Q 014512 12 KRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG--KRGKSGLVALNLDLAQAATFVKECL 89 (423)
Q Consensus 12 k~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g--~Rgk~GgV~l~~s~eea~~~a~~~l 89 (423)
.++|++. ||++| +.+. ++ + ++. +||+|||....| +| |+.++.|++|....++++.
T Consensus 131 yk~L~~a-----GI~~P--k~~~--~p--~-------eId-~PVIVKp~~asG~~sr----G~f~a~s~eEl~~~a~~l~ 187 (366)
T PRK13277 131 YWLLEKA-----GIPYP--KLFK--DP--E-------EID-RPVIVKLPEAKRRLER----GFFTASSYEDFYEKSEELI 187 (366)
T ss_pred HHHHHHc-----CCCCc--eeec--Cc--c-------ccC-ccEEEEECCCCCcccc----CeEeeCCHHHHHHHHHhhh
Confidence 3588888 99999 4332 22 2 444 799999998776 66 8889999999998888776
Q ss_pred cccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC-CCeeeee
Q 014512 90 GKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL-GCSVSFS 133 (423)
Q Consensus 90 ~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~-~p~il~s 133 (423)
.....+ ...+...+|||++. +.|+++-+..|+. +.+-++|
T Consensus 188 ~~g~I~---~~~~~~~iIQEyI~-G~ey~~d~F~s~l~g~ve~l~ 228 (366)
T PRK13277 188 KAGVID---REDLKNARIEEYVI-GAHFNFNYFYSPIRDRLELLG 228 (366)
T ss_pred hcCccc---ccccccceeEeccC-CCEEEEEEEEeccCCcEEEEE
Confidence 432211 12246788999998 8899999999974 5554444
No 85
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0022 Score=64.40 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=65.7
Q ss_pred HHHHHHHchhCCCCCccCCCceEEecCCCHHHHHH-hhcccCCCcEEEeeccccCcccccCeeEEeCCHH-HHHHHHHHH
Q 014512 11 SKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQ-KEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLA-QAATFVKEC 88 (423)
Q Consensus 11 ak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~-~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e-ea~~~a~~~ 88 (423)
+-++|++. |||+| +..++.+. +++.. ..+.+| +|+|+||-.-.+|| ||.+..+.+ ++.+..+.+
T Consensus 123 ~~~~l~~~-----~ipvP--~T~i~~~~--~~~~~~~~~~~g-~pvVlKp~~Gs~G~----gV~~v~~~d~~l~~~~e~~ 188 (318)
T COG0189 123 TTQLLAKA-----GIPVP--PTLITRDP--DEAAEFVAEHLG-FPVVLKPLDGSGGR----GVFLVEDADPELLSLLETL 188 (318)
T ss_pred HHHHHHhc-----CCCCC--CEEEEcCH--HHHHHHHHHhcC-CCEEEeeCCCCCcc----ceEEecCCChhHHHHHHHH
Confidence 45677777 99999 88999874 45544 445555 79999998877788 898888777 666666655
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSER 125 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~ 125 (423)
... ..+-++||++++....-+..+....
T Consensus 189 ~~~---------~~~~~ivQeyi~~~~~~~rrivv~~ 216 (318)
T COG0189 189 TQE---------GRKLIIVQEYIPKAKRDDRRVLVGG 216 (318)
T ss_pred hcc---------ccceEehhhhcCcccCCcEEEEEeC
Confidence 421 1135899999997776666666544
No 86
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=96.95 E-value=0.014 Score=58.41 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a-~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...++.+...| --...++-+||++ ..-.+.+.++.+.+ ||++++|++.. .+|..- .+
T Consensus 169 ~G~VgiVSqSGtl~~ei~~~~~~~G--lG~S~~VsiGnd~~~g~~~~D~L~~~~~----Dp~T~~Ivl~~E~gG~~e-~~ 241 (317)
T PTZ00187 169 KGKIGIVSRSGTLTYEAVAQTTAVG--LGQSTCVGIGGDPFNGTNFIDCLKLFLN----DPETEGIILIGEIGGTAE-EE 241 (317)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC--CCEEEEEEeCCCCCCCCCHHHHHHHHhh----CCCccEEEEEEecCCchh-HH
Confidence 6999999999999999999999864 3467788899997 23357788888777 99999999888 666432 22
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHH----------------HHHhhhhhcCCceeecCCCCCHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLA----------------KMRALAEEIGLPIEVYGPEATMTG 410 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~----------------~l~~~~~~~Gip~~~~g~~~t~~~ 410 (423)
+ ..++++ .. .++||++...|.++..+++ ...++.+++|+.+. ++++|
T Consensus 242 -a---a~fi~~---~~-----~~KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~-----~~~~e 304 (317)
T PTZ00187 242 -A---AEWIKN---NP-----IKKPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVV-----KSPAQ 304 (317)
T ss_pred -H---HHHHHh---hc-----CCCcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEe-----CCHHH
Confidence 2 233332 21 3699999988876522222 12234448999875 78888
Q ss_pred HHHHHHHHH
Q 014512 411 ICKQAIECI 419 (423)
Q Consensus 411 av~~~v~~~ 419 (423)
..+...+..
T Consensus 305 l~~~~~~~~ 313 (317)
T PTZ00187 305 LGKTMLEVM 313 (317)
T ss_pred HHHHHHHHH
Confidence 777665554
No 87
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=96.94 E-value=0.011 Score=52.29 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=69.8
Q ss_pred CcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHh
Q 014512 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAA 349 (423)
Q Consensus 270 g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa 349 (423)
|+|++++..|+++...++.+...| --..-++-+|..++.. ..+.++.+.+ ||++++|++-+= ++-+.
T Consensus 2 G~valisQSG~~~~~~~~~~~~~g--~g~s~~vs~Gn~~dv~-~~d~l~~~~~----D~~t~~I~ly~E-~~~d~----- 68 (138)
T PF13607_consen 2 GGVALISQSGALGTAILDWAQDRG--IGFSYVVSVGNEADVD-FADLLEYLAE----DPDTRVIVLYLE-GIGDG----- 68 (138)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHTT---EESEEEE-TT-SSS--HHHHHHHHCT-----SS--EEEEEES---S-H-----
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC--CCeeEEEEeCccccCC-HHHHHHHHhc----CCCCCEEEEEcc-CCCCH-----
Confidence 899999999999999999998853 3345566666666553 6677777766 999998877762 33332
Q ss_pred hHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH-------------HHHHHHhhhhhcCCceeecCCCCCHHHHHHH
Q 014512 350 TFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR-------------GLAKMRALAEEIGLPIEVYGPEATMTGICKQ 414 (423)
Q Consensus 350 ~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~-------------a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~ 414 (423)
+.+++++++.. .+||||+...|.+..- ..+.+..+.+++|+-.. ++++|.+..
T Consensus 69 --~~f~~~~~~a~-----~~KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v-----~~~~el~~~ 134 (138)
T PF13607_consen 69 --RRFLEAARRAA-----RRKPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRV-----DDLDELLDA 134 (138)
T ss_dssp --HHHHHHHHHHC-----CCS-EEEEE---------------------HHHHHHHHHHCTEEEE-----SSHHHHHHH
T ss_pred --HHHHHHHHHHh-----cCCCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEE-----CCHHHHHHH
Confidence 55667777765 3599999877753221 12333444448888543 787776654
No 88
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=96.88 E-value=0.0084 Score=58.49 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=91.5
Q ss_pred eEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCcEEEEEe-cCCC
Q 014512 264 TVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-GEVLQYARVVIDCATADPDGRKRALVI-GGGI 341 (423)
Q Consensus 264 ~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi 341 (423)
..+-..|+||+++-.|.+.-=+.-.+...|.|- .--+=+|||+-. ..+.++++.+.+ ||+.++++++- .||-
T Consensus 140 ~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~Gq--S~~IGiGGDpi~Gt~fid~L~~fe~----Dp~T~~ivmiGEiGG~ 213 (293)
T COG0074 140 GNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQ--STAIGIGGDPIPGTSFIDALEMFEA----DPETEAIVMIGEIGGP 213 (293)
T ss_pred hhhccCCceEEEecCcchHHHHHHHHHhcCCce--EEEEEeCCCCcCCccHHHHHHHHhc----CccccEEEEEecCCCc
Confidence 445568999999999999888888888865432 233667888654 366778887776 99999988887 7775
Q ss_pred cchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHH----------------hhhhhcCCceeecCCC
Q 014512 342 ANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMR----------------ALAEEIGLPIEVYGPE 405 (423)
Q Consensus 342 ~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~----------------~~~~~~Gip~~~~g~~ 405 (423)
+ ++.|| + .++++- .+||+|..+.|..+.+++++=. +..+++|+++-
T Consensus 214 a--Ee~AA--~----~i~~~~-----~~KPVVa~iaG~tap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~----- 275 (293)
T COG0074 214 A--EEEAA--E----YIKANA-----TRKPVVAYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVA----- 275 (293)
T ss_pred H--HHHHH--H----HHHHhc-----cCCCEEEEEeccCCCccchhhhhhhhhcCCCccHHHHHHHHHHcCCeec-----
Confidence 4 55552 2 334421 3499999988876665544322 23337888875
Q ss_pred CCHHHHHHHHHHHHH
Q 014512 406 ATMTGICKQAIECIS 420 (423)
Q Consensus 406 ~t~~~av~~~v~~~~ 420 (423)
+||.+..+...+..+
T Consensus 276 etp~~l~~~l~~vl~ 290 (293)
T COG0074 276 ETPAELGELLLEVLK 290 (293)
T ss_pred CCHHHHHHHHHHHhh
Confidence 788887776666554
No 89
>PRK06091 membrane protein FdrA; Validated
Probab=96.86 E-value=0.0099 Score=63.35 Aligned_cols=119 Identities=15% Similarity=0.064 Sum_probs=88.2
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCC-----CCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCc
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA-----PNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIA 342 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~-----a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~ 342 (423)
.|+|++++-.|+++...++.+... |.-...++-+|+. +..-.+.++++.+.+ ||++++|++.+ |.+
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~~~--GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~----DP~TkvIvly~kppa-- 264 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIALA--GEGITHAIGLGGRDLSAEVGGISALTALEMLSA----DEKSEVIAFVSKPPA-- 264 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc--CCCeEEEEECCCCccccccCCCCHHHHHHHHhh----CCCCcEEEEEEecCc--
Confidence 799999999999999999999886 4456777888877 212346677887777 99999988888 632
Q ss_pred chHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 343 NFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 343 ~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+.+. +.++++++.. ++|||+...|.+..-+ + +.|+-. .+|++|++..++-++.
T Consensus 265 --E~v~---~~fl~aar~~-------~KPVVvlk~Grs~~g~----~----q~GVi~-----a~tleEl~~~A~~la~ 317 (555)
T PRK06091 265 --EAVR---LKIINAMKAT-------GKPVVALFLGYTPAVA----R----DENVWF-----ASTLDEAARLACLLSR 317 (555)
T ss_pred --hHHH---HHHHHHHhhC-------CCCEEEEEecCCchhh----h----cCCeEE-----eCCHHHHHHHHHHHhc
Confidence 5555 6666666653 5999998777654332 4 678732 3899999999987764
No 90
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.72 E-value=0.059 Score=57.14 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=98.2
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
-.||.++.+. |+|+- +++.-...+.+++...++++| |||.+|+---=||| |.+++.+++|+.++...-
T Consensus 117 ~~AK~l~~~A-----gVp~V--PG~~g~~qd~~~~~~~A~eiG-yPVlIKAsaGGGGK----GMRvv~~~~e~~e~l~sa 184 (645)
T COG4770 117 IAAKKLAAEA-----GVPTV--PGYHGPIQDAAELVAIAEEIG-YPVLIKASAGGGGK----GMRVVETPEEFAEALESA 184 (645)
T ss_pred HHHHHHHHHc-----CCCcc--CCCCCcccCHHHHHHHHHhcC-CcEEEEeccCCCCC----ceEeecCHHHHHHHHHHH
Confidence 4689999999 97754 444433334789999999998 89999987655555 889999999987766544
Q ss_pred hcccchh-ccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeeecCCCcccccccceeEEEecCCccCCCHhhHHHHH
Q 014512 89 LGKEMEM-SECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLV 167 (423)
Q Consensus 89 l~~~~~~-~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s~~GGv~iE~~~d~~~~lpi~~~~~l~~~~a~~l~ 167 (423)
.. +.+. -| -..++||+++...+=+=+=+.-|..|-++.++ + -|-. +..+-+|+ | .+.. .
T Consensus 185 rr-EA~asFG----ddrv~iEkyl~~PRHIEiQV~aD~HGNvv~Lg-E--RdCS-lQRRhQKV-I--EEAP--------a 244 (645)
T COG4770 185 RR-EAKASFG----DDRVFIEKYLDKPRHIEIQVFADQHGNVVHLG-E--RDCS-LQRRHQKV-I--EEAP--------A 244 (645)
T ss_pred HH-HHHhhcC----CceEehhhhcCCCceEEEEEEecCCCCEEEee-c--cccc-hhhhcchh-h--hcCC--------C
Confidence 32 1111 12 14589999999777666778889887666554 0 0000 11121221 0 0000 0
Q ss_pred hcCChhhHHHHHHHHHHHHHHhhccCccEee
Q 014512 168 ATLPLEIRGEIQEFIKSVFTLFQDLDFTFLE 198 (423)
Q Consensus 168 ~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lE 198 (423)
-++....++++.+..+++.+...=..+=.+|
T Consensus 245 P~l~~~~R~amg~aAv~~a~avgY~gAGTVE 275 (645)
T COG4770 245 PFLTEETREAMGEAAVAAAKAVGYVGAGTVE 275 (645)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCcCceEE
Confidence 1344466777788888888775433333333
No 91
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.39 E-value=0.057 Score=56.79 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVA 348 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~va 348 (423)
.|+|++++-.|+++...+|.+... |-...-++-+|+.++- .+.+.++.+.+ ||++++|++-+= ++.+.
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~--g~g~s~~vs~Gn~~d~-~~~d~l~~l~~----D~~t~~I~ly~E-~~~~~---- 217 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKN--GVGFSYFVSLGNKADI-DESDLLEYLAD----DPDTKVILLYLE-GIKDG---- 217 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhc--CCCcceEEECCchhhC-CHHHHHHHHhh----CCCCCEEEEEec-CCCCH----
Confidence 599999999999999999999885 4456777888887764 45677887777 999998887763 33332
Q ss_pred hhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH-------------HHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 014512 349 ATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL-------------AKMRALAEEIGLPIEVYGPEATMTGICKQA 415 (423)
Q Consensus 349 a~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~-------------~~l~~~~~~~Gip~~~~g~~~t~~~av~~~ 415 (423)
+.++++++... .+||||+...|.+..-.+ +++..+..++|+... ++++|....+
T Consensus 218 ---~~f~~aa~~a~-----~~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-----~~~~el~~~~ 284 (447)
T TIGR02717 218 ---RKFLKTAREIS-----KKKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-----DSIEELFDLA 284 (447)
T ss_pred ---HHHHHHHHHHc-----CCCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-----CCHHHHHHHH
Confidence 45666666653 369999987777653222 234455558999664 7888877765
Q ss_pred HHHH
Q 014512 416 IECI 419 (423)
Q Consensus 416 v~~~ 419 (423)
.-+.
T Consensus 285 ~~l~ 288 (447)
T TIGR02717 285 RLLS 288 (447)
T ss_pred HHHh
Confidence 5443
No 92
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=96.23 E-value=0.14 Score=53.63 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=75.9
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-..+|+++++. |+|+- +++--...+.+++.+.+.+|| |||.+|+.---||| |.+++.+++|..+..+.
T Consensus 112 K~~sk~im~~A-----gVp~v--pG~~g~~qs~e~~~~~a~eIg-yPvMiKa~~GGGGk----GMria~~~~ef~~~~~~ 179 (670)
T KOG0238|consen 112 KSTSKQIMKAA-----GVPLV--PGYHGEDQSDEEAKKVAREIG-YPVMIKATAGGGGK----GMRIAWSEEEFEEGLES 179 (670)
T ss_pred hHHHHHHHHhc-----CCccc--cCcccccccHHHHHHHHHhcC-CcEEEEeccCCCCc----ceEeecChHHHHHHHHH
Confidence 35689999999 98754 333222233589999999998 89999988654555 88999999887766554
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
-.....+.-| -.++|+|++++..+-+=+-+.-|.-|-.+-+.
T Consensus 180 ak~Ea~~sFG----dd~~llEkfi~npRHiEvQv~gD~hGnav~l~ 221 (670)
T KOG0238|consen 180 AKQEAAKSFG----DDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLG 221 (670)
T ss_pred HHHHHHhhcC----cchhhHHHhccCCceEEEEEEecCCCcEEEec
Confidence 3211110012 36789999999777666777777766666554
No 93
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=96.22 E-value=0.095 Score=52.23 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=86.6
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCC--CCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFT 345 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~--a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~ 345 (423)
.|+|++++-.|+++...++.+...| --..-++-+|+. ++.+ +.+.++.+.+ ||++++|++-+ .+|..- .
T Consensus 150 ~G~ValiSQSG~l~~~l~~~~~~~g--iG~S~~VS~Gn~~~adv~-~~d~L~yl~~----Dp~T~~I~ly~E~~G~~~-~ 221 (300)
T PLN00125 150 PGRIGIVSRSGTLTYEAVFQTTAVG--LGQSTCVGIGGDPFNGTN-FVDCLEKFVK----DPQTEGIILIGEIGGTAE-E 221 (300)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHcC--CCeEEEEEeCCCCCCCCC-HHHHHHHHhh----CCCCcEEEEEeccCCchH-H
Confidence 6999999999999999999998864 346677788888 6554 5577777776 99999999888 655431 1
Q ss_pred HHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH----------------HHHHHhhhhhcCCceeecCCCCCHH
Q 014512 346 DVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG----------------LAKMRALAEEIGLPIEVYGPEATMT 409 (423)
Q Consensus 346 ~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a----------------~~~l~~~~~~~Gip~~~~g~~~t~~ 409 (423)
+ . +.++++.+ ++||||+...|.++..+ -+.+..+..++|+... +|++
T Consensus 222 d-~---~~f~~aa~--------~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v-----~~~~ 284 (300)
T PLN00125 222 D-A---AAFIKESG--------TEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVV-----ESPA 284 (300)
T ss_pred H-H---HHHHHHhc--------CCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEe-----CCHH
Confidence 1 1 34444322 26999998777664111 1334445558999765 7888
Q ss_pred HHHHHHHHHH
Q 014512 410 GICKQAIECI 419 (423)
Q Consensus 410 ~av~~~v~~~ 419 (423)
|.....-+..
T Consensus 285 el~~~~~~~~ 294 (300)
T PLN00125 285 KIGVAMLEVF 294 (300)
T ss_pred HHHHHHHHHH
Confidence 8777665544
No 94
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.95 E-value=0.11 Score=51.46 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-GEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...+|.....| --..-++-+|+.+.. -.+.+.++.+.+ ||++++|++-+ ..+-.. .+
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~g--iG~S~~Vs~Gn~a~~dv~~~D~l~~l~~----Dp~T~~I~lylE~~~~~~-~~ 215 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAG--FGQSTCVGIGGDPVNGTSFIDVLEAFEK----DPETEAIVMIGEIGGSAE-EE 215 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcC--CCeEEEEEeCCCcCCCCCHHHHHHHHhh----CCCCcEEEEEEecCCchH-HH
Confidence 6999999999999999999998864 346778888988541 245677777776 99999988887 433221 12
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH----------------HHHHHhhhhhcCCceeecCCCCCHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG----------------LAKMRALAEEIGLPIEVYGPEATMTG 410 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a----------------~~~l~~~~~~~Gip~~~~g~~~t~~~ 410 (423)
.+ + .++.. .+|||++...|.++..+ .+....+.+++|+... ++++|
T Consensus 216 ~~---~----~~~~~------~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v-----~~~~e 277 (286)
T TIGR01019 216 AA---D----FIKQN------MSKPVVGFIAGATAPPGKRMGHAGAIISGGKGTAESKIEALEAAGVTVV-----KSPSD 277 (286)
T ss_pred HH---H----HHHhc------CCCCEEEEEecCCCCccccccchhhhhcCCCCCHHHHHHHHHHCCCeEe-----CCHHH
Confidence 22 1 11211 36999998666554111 1233334448898654 78888
Q ss_pred HHHHHHH
Q 014512 411 ICKQAIE 417 (423)
Q Consensus 411 av~~~v~ 417 (423)
......+
T Consensus 278 l~d~l~~ 284 (286)
T TIGR01019 278 IGELLAE 284 (286)
T ss_pred HHHHHHH
Confidence 7766554
No 95
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=95.90 E-value=0.032 Score=50.23 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
+..+++|++. |||+| ........ . .. .+|+|+||---.|+. ||.+..+.++......
T Consensus 5 ~~~~~~L~~~-----gi~~P--~~~~~~~~--~-------~~-~~~~viKp~~G~Gg~----~i~~~~~~~~~~~~~~-- 61 (161)
T PF02655_consen 5 LKTYKFLKEL-----GIPVP--TTLRDSEP--E-------PI-DGPWVIKPRDGAGGE----GIRIVDSEDELEEFLN-- 61 (161)
T ss_dssp HHHHHHHTTT------S----------EES--S----------SSSEEEEESS-----------B--SS--TTE------
T ss_pred HHHHHHHHcc-----CCCCC--Cccccccc--c-------cc-CCcEEEEeCCCCCCC----CeEEECCchhhccccc--
Confidence 4567788888 99999 22222111 1 11 279999998655544 5666666554332111
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
..-++||++. +.++-+++..+...
T Consensus 62 --------------~~~i~Qe~i~-G~~~Sv~~l~~~~~ 85 (161)
T PF02655_consen 62 --------------KLRIVQEFIE-GEPYSVSFLASGGG 85 (161)
T ss_dssp -----------------EEEE----SEEEEEEEEE-SSS
T ss_pred --------------cceEEeeeeC-CEEeEEEEEEeCCc
Confidence 1128999998 88999999888754
No 96
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=95.77 E-value=0.19 Score=55.46 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=70.3
Q ss_pred HHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHh
Q 014512 10 DSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (423)
.|+.+-.+. |+||-....-...+ .+|+.+.+++.| ||+.+|+-.--||| |-++..+.+++.+++.+--
T Consensus 124 ~Ar~~A~~a-----gvPvipgt~~~~~~--~ee~~~fa~~~g-yPvmiKA~~GGGGR----GMR~vr~~~~l~~~~~~Ak 191 (1149)
T COG1038 124 KARNAAIKA-----GVPVIPGTDGPIET--IEEALEFAEEYG-YPVMIKAAAGGGGR----GMRVVRSEADLAEAFERAK 191 (1149)
T ss_pred HHHHHHHHc-----CCCccCCCCCCccc--HHHHHHHHHhcC-CcEEEEEccCCCcc----ceeeecCHHHHHHHHHHHH
Confidence 455666666 98864221112222 689999999998 89999998877778 8899988888877766543
Q ss_pred cccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCee
Q 014512 90 GKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSV 130 (423)
Q Consensus 90 ~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~i 130 (423)
......-| -..++||+++...+-+=+-+.-|..|-++
T Consensus 192 sEAkaAFG----~~eVyvEk~ve~pkHIEVQiLgD~~Gnvv 228 (1149)
T COG1038 192 SEAKAAFG----NDEVYVEKLVENPKHIEVQILGDTHGNVV 228 (1149)
T ss_pred HHHHHhcC----CCcEEhhhhhcCcceeEEEEeecCCCCEE
Confidence 21111113 24588999988776666777777766543
No 97
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.49 E-value=0.25 Score=49.08 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=83.3
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-GEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...+|..... |--..-++-+|..+.. -...+.++.+.+ ||++++|++-+ ..+..+ .+
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~--giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~----Dp~T~~I~lylE~~~~~~-~~ 217 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDL--GFGQSTCVGIGGDPINGTNFIDVLEAFEE----DPETEAIVMIGEIGGSAE-EE 217 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHc--CCCeEEEEEeCCCcCCCCCHHHHHHHHhh----CCCCcEEEEEEecCCcHH-HH
Confidence 699999999999999999999886 4446788888887441 134566777766 99999988877 433321 12
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH----------------HHHHhhhhhcCCceeecCCCCCHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL----------------AKMRALAEEIGLPIEVYGPEATMTG 410 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~----------------~~l~~~~~~~Gip~~~~g~~~t~~~ 410 (423)
.+ +- ++.. .+|||++.-.|.++..++ ++...+.+++|+... ++++|
T Consensus 218 a~---~~----~~~~------~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v-----~~~~e 279 (291)
T PRK05678 218 AA---EY----IKAN------VTKPVVGYIAGVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVA-----RTPSE 279 (291)
T ss_pred HH---HH----HHHc------CCCCEEEEEecCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCCeEC-----CCHHH
Confidence 22 11 1111 269999986666551111 223344558899654 78888
Q ss_pred HHHHHHHHH
Q 014512 411 ICKQAIECI 419 (423)
Q Consensus 411 av~~~v~~~ 419 (423)
....+.++.
T Consensus 280 l~~~~~~~~ 288 (291)
T PRK05678 280 IGELLKEVL 288 (291)
T ss_pred HHHHHHHHH
Confidence 877766554
No 98
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=95.31 E-value=0.32 Score=48.92 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCC--HHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTN--FDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~--~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
..-...|.+++.. |+|++ ++...+..+ .....+..+.++ +|++|||.-.- -+=|+..+.+.++...
T Consensus 102 mdk~~~K~~~~~~-----g~~~a--~~~~~~~~~~~~~~~e~~~~~l~-~p~~Vkp~~~g----SSvg~~~v~~~~d~~~ 169 (317)
T COG1181 102 MDKIVTKRLFKAE-----GLPVA--PYVALTRDEYSSVIVEEVEEGLG-FPLFVKPAREG----SSVGRSPVNVEGDLQS 169 (317)
T ss_pred ccHHHHHHHHHHC-----CCCcc--ceeeeecccchhHHHHHhhcccC-CCEEEEcCCcc----ceeeEEEeeeccchHH
Confidence 3445678888888 99988 555554311 122234455666 89999987541 1113444555566665
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+.+..... . +.+++|+++. ++|+-+++..+..
T Consensus 170 ~~e~a~~~-----d-----~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 170 ALELAFKY-----D-----RDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred HHHHHHHh-----C-----CceeeccCCC-cceEEEEecCCcc
Confidence 44444322 1 4589999998 8999999998754
No 99
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=95.07 E-value=0.15 Score=51.54 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=52.6
Q ss_pred HHHHHHHchhCCCC-------CccCCCceEEecCCCHHHHH---HhhcccCCCcEEEeeccccCcccccCeeEEeCCHHH
Q 014512 11 SKRLLKEHFQRLSG-------RELPIKSAQVIESTNFDELA---QKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
Q Consensus 11 ak~lL~~y~~~~~G-------I~vp~~~~~~~~~~~~~ea~---~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee 80 (423)
...+|++. | ||+| +..++.+. +.+. .....++ +|+|+||.+-. |.++.-++.+..+++.
T Consensus 111 ~~~~L~~~-----~~~~~~~~i~~P--~t~v~~~~--~~al~~~~~~~~l~-~P~V~KPl~g~-Gss~gh~m~lv~~~~~ 179 (328)
T PLN02941 111 MLQVVADL-----KLSDGYGSVGVP--KQLVVYDD--ESSIPDAVALAGLK-FPLVAKPLVAD-GSAKSHKMSLAYDQEG 179 (328)
T ss_pred HHHHHHHc-----CCcccCCCCCCC--CEEEEcCH--HHHHHHHHHHhcCC-CCEEEeecccC-CCccccceEEecCHHH
Confidence 45667776 7 7787 88888774 3323 3346776 89999998764 4666678888888766
Q ss_pred HHHHHHHHhcccchhccCCcceeEEEEEeecCCC
Q 014512 81 AATFVKECLGKEMEMSECKGPITTFIIEPFIPHN 114 (423)
Q Consensus 81 a~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~ 114 (423)
+.. +. . -+++||+++++
T Consensus 180 L~~---------l~--~------p~~lQEfVnh~ 196 (328)
T PLN02941 180 LSK---------LE--P------PLVLQEFVNHG 196 (328)
T ss_pred HHh---------cC--C------cEEEEEecCCC
Confidence 553 21 1 28899999875
No 100
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=94.89 E-value=0.17 Score=51.14 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=68.1
Q ss_pred HHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccC--CCcEEEeeccccCcccccCeeEEe-CCHHHHHHHHH
Q 014512 10 DSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLT--SCKLVVKPDMLFGKRGKSGLVALN-LDLAQAATFVK 86 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg--~~pvVvKaqv~~g~Rgk~GgV~l~-~s~eea~~~a~ 86 (423)
.-.+.+++. |||+| ++..+++ .+|...+.++++ +.|+.|||-.-+||+ |.++- .+.++.....+
T Consensus 110 ~~y~~~~~~-----~ipvp--~~~~v~t--~~el~~a~~~l~~~~~~~CvKP~~g~gg~----GFr~l~~~~~~l~~l~~ 176 (329)
T PF15632_consen 110 AFYEFMEAN-----GIPVP--PYWRVRT--ADELKAAYEELRFPGQPLCVKPAVGIGGR----GFRVLDESRDELDALFE 176 (329)
T ss_pred HHHHHHHhC-----CCCCC--CEEEeCC--HHHHHHHHHhcCCCCceEEEecccCCCcc----eEEEEccCcchHHHhcC
Confidence 344556666 99999 8899887 688888877764 245999999888887 66655 35555443332
Q ss_pred ---------HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCee
Q 014512 87 ---------ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSV 130 (423)
Q Consensus 87 ---------~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~i 130 (423)
+++. .+ ........++|.|+++ +.|+.|=+..+. |.++
T Consensus 177 ~~~~~i~~~~~~~-~l---~~~~~~~~llvMeyL~-G~EySVD~l~~~-G~vi 223 (329)
T PF15632_consen 177 PDSRRISLDELLA-AL---QRSEEFPPLLVMEYLP-GPEYSVDCLADE-GRVI 223 (329)
T ss_pred CCcceeCHHHHHH-HH---hccCCCCCcEEecCCC-CCeEEEEEEecC-CEEE
Confidence 1110 01 1113456789999999 889999888776 4444
No 101
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=94.80 E-value=0.57 Score=50.79 Aligned_cols=103 Identities=12% Similarity=0.163 Sum_probs=69.7
Q ss_pred HHHHHHHchhCCCCCcc-CCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHh
Q 014512 11 SKRLLKEHFQRLSGREL-PIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECL 89 (423)
Q Consensus 11 ak~lL~~y~~~~~GI~v-p~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l 89 (423)
|+.+--+. |+|| |-.++-+. + .+||.+.+.+-| +|+++|+-.--||| |.++.++.+++++++++-.
T Consensus 151 AR~~Ai~a-----gVpvVPGTpgPit-t--~~EA~eF~k~yG-~PvI~KAAyGGGGR----GmRvVr~~e~vee~f~Ra~ 217 (1176)
T KOG0369|consen 151 ARAIAIEA-----GVPVVPGTPGPIT-T--VEEALEFVKEYG-LPVIIKAAYGGGGR----GMRVVRSGEDVEEAFQRAY 217 (1176)
T ss_pred HHHHHHHc-----CCCccCCCCCCcc-c--HHHHHHHHHhcC-CcEEEeecccCCCc----ceEEeechhhHHHHHHHHH
Confidence 44454555 8885 32233333 2 589999999998 79999998877777 8898888888888777665
Q ss_pred cccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCee
Q 014512 90 GKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSV 130 (423)
Q Consensus 90 ~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~i 130 (423)
...+..-|. -.+.||++++..+-+-+-+.-|..|-++
T Consensus 218 SEA~aaFGn----G~~FvEkF~ekPrHIEvQllgD~~GNvv 254 (1176)
T KOG0369|consen 218 SEALAAFGN----GTLFVEKFLEKPRHIEVQLLGDKHGNVV 254 (1176)
T ss_pred HHHHHhcCC----ceeeHHhhhcCcceeEEEEecccCCCEE
Confidence 433322232 2367899998776666766777665544
No 102
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.34 Score=48.26 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=73.9
Q ss_pred HHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcc
Q 014512 12 KRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGK 91 (423)
Q Consensus 12 k~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (423)
..||.+. ||++| ...++ ++| +. .||+||.+..-||| |--++.|++|..+.+++++..
T Consensus 129 ~~lLekA-----gi~~P----~~~~~--Pee-------Id-r~VIVK~pgAkggR----GyFiA~s~eef~ek~e~l~~~ 185 (361)
T COG1759 129 YKLLEKA-----GLRIP----KKYKS--PEE-------ID-RPVIVKLPGAKGGR----GYFIASSPEEFYEKAERLLKR 185 (361)
T ss_pred HHHHHHc-----CCCCC----cccCC--hHH-------cC-CceEEecCCccCCc----eEEEEcCHHHHHHHHHHHHHc
Confidence 4577777 99999 33444 355 34 69999987765666 778899999999999999875
Q ss_pred cchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCC-eeeeecCCCcc--cccccceeEEEe
Q 014512 92 EMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGC-SVSFSECGGIE--IEENWDKVKTIF 151 (423)
Q Consensus 92 ~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p-~il~s~~GGv~--iE~~~d~~~~lp 151 (423)
-..+ ..-+++..||+++- +.-+|+.....+-.+ +=++| +| .|..-|-..|+|
T Consensus 186 gvi~---~edlkna~IeEYv~-G~~f~~~yFyS~i~~~lEl~g----~D~R~Esn~Dg~~RlP 240 (361)
T COG1759 186 GVIT---EEDLKNARIEEYVV-GAPFYFHYFYSPIKDRLELLG----IDRRYESNLDGLVRLP 240 (361)
T ss_pred CCcc---hhhhhhceeeEEee-ccceeeeeeeccccCceeEee----eeheeeccchhhccCC
Confidence 5431 12357788999886 667888887777633 33333 32 233445555554
No 103
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.03 E-value=1.6 Score=38.17 Aligned_cols=95 Identities=11% Similarity=0.157 Sum_probs=61.8
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
+|+|++.+++.+.+++. ..+.+.+.+ .+-.+..-+.. ..+++.+++.+. ...+++ .||...
T Consensus 34 i~lg~~~s~e~~v~aa~--------e~~adii~i--Ssl~~~~~~~~---~~~~~~L~~~g~----~~i~vi--vGG~~~ 94 (132)
T TIGR00640 34 DVGPLFQTPEEIARQAV--------EADVHVVGV--SSLAGGHLTLV---PALRKELDKLGR----PDILVV--VGGVIP 94 (132)
T ss_pred EECCCCCCHHHHHHHHH--------HcCCCEEEE--cCchhhhHHHH---HHHHHHHHhcCC----CCCEEE--EeCCCC
Confidence 68999999997766654 234554443 33222233333 888888887642 134444 488666
Q ss_pred HHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 382 QRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 382 ~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
.+-.+.|. ++|+.- +|++-+++.+.+....+...
T Consensus 95 ~~~~~~l~----~~Gvd~-~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 95 PQDFDELK----EMGVAE-IFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred hHhHHHHH----HCCCCE-EECCCCCHHHHHHHHHHHHH
Confidence 65566677 789964 57788999999998887653
No 104
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=92.06 E-value=0.53 Score=46.52 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=55.6
Q ss_pred CCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccC-e-eEEeCCHHHHHHHHHHHhcccchhccCCcc
Q 014512 24 GRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSG-L-VALNLDLAQAATFVKECLGKEMEMSECKGP 101 (423)
Q Consensus 24 GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~G-g-V~l~~s~eea~~~a~~~l~~~~~~~g~~~~ 101 (423)
|+|+| +.+.+++. +-..+.++- +||++||..-. +++--+ . +....|.||.+.+.....+ ++ |
T Consensus 126 gl~~P--~Ty~v~S~----~d~~~~el~-FPvILKP~mgg-~~~~~araKa~~a~d~ee~k~a~~~a~e-ei---g---- 189 (415)
T COG3919 126 GLPYP--KTYLVNSE----IDTLVDELT-FPVILKPGMGG-SVHFEARAKAFTAADNEEMKLALHRAYE-EI---G---- 189 (415)
T ss_pred CCCCc--ceEEecch----hhhhhhhee-eeEEecCCCCC-cceeehhhheeeccCHHHHHHHHHHHHH-hc---C----
Confidence 99998 77888763 223345664 89999998642 122211 1 2234566776655444322 11 2
Q ss_pred eeEEEEEeecCCCce--EEEEEEEeCCCCeeeee
Q 014512 102 ITTFIIEPFIPHNEE--FYLNIVSERLGCSVSFS 133 (423)
Q Consensus 102 v~~vlVe~~~~~~~E--~ylgi~~D~~~p~il~s 133 (423)
..+++||+|+|++.| +......|...|+.+|.
T Consensus 190 pDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeft 223 (415)
T COG3919 190 PDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFT 223 (415)
T ss_pred CCceEEEEecCCCCcccchHHHHHhCCCchhhhh
Confidence 367899999998765 33344456556776653
No 105
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.32 E-value=2.9 Score=36.76 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=71.6
Q ss_pred cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHH
Q 014512 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~ 359 (423)
|+-|+ ..++...|+ .-+++|-+.+++++.+++. ..+.+.|.+....+ .....+ +.+++.++
T Consensus 19 G~~iv-~~~lr~~G~-----eVi~LG~~vp~e~i~~~a~--------~~~~d~V~lS~~~~--~~~~~~---~~~~~~L~ 79 (137)
T PRK02261 19 GNKIL-DRALTEAGF-----EVINLGVMTSQEEFIDAAI--------ETDADAILVSSLYG--HGEIDC---RGLREKCI 79 (137)
T ss_pred HHHHH-HHHHHHCCC-----EEEECCCCCCHHHHHHHHH--------HcCCCEEEEcCccc--cCHHHH---HHHHHHHH
Confidence 44333 345555432 4589999999998877765 34566666655332 223333 77777777
Q ss_pred HhhhhhhccceeEEEEeCCCC------HHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 360 EKESKLKAARMHLYVRRGGPN------YQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 360 ~~~~~~~~~~~pivvrl~G~~------~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+.+. .+ +.+.+||.- .++-++.|+ +.|+. .+|++.+++++++....+.+++
T Consensus 80 ~~~~----~~--~~i~vGG~~~~~~~~~~~~~~~l~----~~G~~-~vf~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 80 EAGL----GD--ILLYVGGNLVVGKHDFEEVEKKFK----EMGFD-RVFPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred hcCC----CC--CeEEEECCCCCCccChHHHHHHHH----HcCCC-EEECcCCCHHHHHHHHHHHhcc
Confidence 7642 23 345566643 455666777 68974 4678888999999988887764
No 106
>PRK12458 glutathione synthetase; Provisional
Probab=90.35 E-value=1.4 Score=44.58 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=43.8
Q ss_pred CccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHH--HHHHHHHHhcccchhccCCcce
Q 014512 25 RELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQ--AATFVKECLGKEMEMSECKGPI 102 (423)
Q Consensus 25 I~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ee--a~~~a~~~l~~~~~~~g~~~~v 102 (423)
+++| +..++.+ .+++.+..++.++.|+|+||..-.||+ ||.+..+.++ +....+.+.. .
T Consensus 139 ~~vP--~T~v~~~--~~~~~~~~~~~~~~pvVvKPl~G~gG~----gV~~v~~~~~~~~~~ile~~~~------~----- 199 (338)
T PRK12458 139 EVRP--TTHISRN--KEYIREFLEESPGDKMILKPLQGSGGQ----GVFLIEKSAQSNLNQILEFYSG------D----- 199 (338)
T ss_pred CCCC--CEEEeCC--HHHHHHHHHHcCCCeEEEEECCCCCcc----CeEEEecCChhhHHHHHHHHhh------C-----
Confidence 4577 7777765 577777777776445999998877777 6766543332 2222222211 1
Q ss_pred eEEEEEeecCC
Q 014512 103 TTFIIEPFIPH 113 (423)
Q Consensus 103 ~~vlVe~~~~~ 113 (423)
..+++|++++.
T Consensus 200 ~~~ivQeyI~~ 210 (338)
T PRK12458 200 GYVIAQEYLPG 210 (338)
T ss_pred CCEEEEEcccC
Confidence 24899999984
No 107
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=86.28 E-value=8.8 Score=32.71 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=60.8
Q ss_pred HHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhh
Q 014512 285 YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESK 364 (423)
Q Consensus 285 ~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~ 364 (423)
....+...|+ .-+++|.+.+++.+.+++. +.+.+.+.+ .+......+.+ +.+++.+++..+
T Consensus 19 ~~~~l~~~G~-----~vi~lG~~vp~e~~~~~a~--------~~~~d~V~i--S~~~~~~~~~~---~~~~~~L~~~~~- 79 (122)
T cd02071 19 IARALRDAGF-----EVIYTGLRQTPEEIVEAAI--------QEDVDVIGL--SSLSGGHMTLF---PEVIELLRELGA- 79 (122)
T ss_pred HHHHHHHCCC-----EEEECCCCCCHHHHHHHHH--------HcCCCEEEE--cccchhhHHHH---HHHHHHHHhcCC-
Confidence 3456666432 3478999999997766655 223343443 33333333333 777777777531
Q ss_pred hhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHH
Q 014512 365 LKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQ 414 (423)
Q Consensus 365 ~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~ 414 (423)
+ .+.+..||....+-...|. ++|+.-+ |++-+++++.+..
T Consensus 80 ----~-~i~i~~GG~~~~~~~~~~~----~~G~d~~-~~~~~~~~~~~~~ 119 (122)
T cd02071 80 ----G-DILVVGGGIIPPEDYELLK----EMGVAEI-FGPGTSIEEIIDK 119 (122)
T ss_pred ----C-CCEEEEECCCCHHHHHHHH----HCCCCEE-ECCCCCHHHHHHH
Confidence 1 3556678766666566666 7898755 5566777777654
No 108
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.91 E-value=3 Score=41.93 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 307 APNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 307 ~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
..+.+.+.+.++.+.. ||++++|++.+ |||.+-.. +-|.++++.+.. .+ |+++.+++..+
T Consensus 79 ~~~~~~~~~~l~~~~~----~~~vk~vvL~inSPGG~v~as------~~i~~~l~~l~~----~~-PV~v~v~~~AA 140 (317)
T COG0616 79 FIGGDDIEEILRAARA----DPSVKAVVLRINSPGGSVVAS------ELIARALKRLRA----KK-PVVVSVGGYAA 140 (317)
T ss_pred cccHHHHHHHHHHHhc----CCCCceEEEEEECcCCchhHH------HHHHHHHHHHhh----cC-CEEEEECCeec
Confidence 5667778888888877 99999987776 99976432 556667777653 23 99998887543
No 109
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=85.53 E-value=1.3 Score=44.53 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCC--HHHHHHhhcccCCCcEEEeeccccCcccccCeeEEe
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTN--FDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALN 75 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~--~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~ 75 (423)
+....+|++. |||+| +..++.+.+ .+++.+... +..+||+||..-.+|| ||.+.
T Consensus 39 ~~t~~lL~~a-----glpvP--~T~~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~Gr----GI~~i 94 (317)
T TIGR02291 39 LKTKIIAQAA-----GITVP--ELYGVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGK----GILVI 94 (317)
T ss_pred HHHHHHHHHc-----CCCCC--CEEEecCchhhHHHHHHHHc--cCCCEEEEECCCCCcc----CeEEE
Confidence 3457788888 99999 767766541 122322222 2237999999877777 66554
No 110
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=84.97 E-value=17 Score=38.08 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=66.6
Q ss_pred cEEEEEcCCcH--------HHHHHHHhhccCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCcEEEEEecCCC
Q 014512 271 RIWTMVAGGGA--------SVIYADTVGDLGYASELGNYAEYSGAP-NEGEVLQYARVVIDCATADPDGRKRALVIGGGI 341 (423)
Q Consensus 271 ~I~~i~nG~G~--------~~~~~D~l~~~g~gg~paN~lD~gG~a-~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi 341 (423)
+||+++.+.++ ..-..+.+... ....+.+.++.+--. +.+...++.+..-+ + +++++++.+++.-
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~----~-~~d~ii~~~~tf~ 75 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADL-LNELPVEVVDKPEVTGTPDEARKAAEEFNE----A-NCDGLIVWMHTFG 75 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHH-HhcCCceEEecCcccCCHHHHHHHHHHHhh----c-CCcEEEEcccccc
Confidence 46777777772 22222333221 122355666655444 77777777776544 4 7899888774332
Q ss_pred cchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCC----------CHHHHHHHHHhhhhhcCCce-eecCCCCCHH
Q 014512 342 ANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGP----------NYQRGLAKMRALAEEIGLPI-EVYGPEATMT 409 (423)
Q Consensus 342 ~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~----------~~~~a~~~l~~~~~~~Gip~-~~~g~~~t~~ 409 (423)
.. ..++.+++.. ++|++.+ ...+ +..-|..-+.......|+|. +++|...+ +
T Consensus 76 ~~--------~~~~~~~~~~-------~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~g~~~d-~ 139 (452)
T cd00578 76 PA--------KMWIAGLSEL-------RKPVLLLATQFNREIPDFMNLNQSACGLREFGNILARLGIPFKVVYGHWKD-E 139 (452)
T ss_pred cH--------HHHHHHHHhc-------CCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHHHcCCceeEEECCCCC-H
Confidence 21 3445555554 5898887 5542 33333333333333899985 56775544 3
Q ss_pred HHHHH
Q 014512 410 GICKQ 414 (423)
Q Consensus 410 ~av~~ 414 (423)
++.+.
T Consensus 140 ~~~~~ 144 (452)
T cd00578 140 DVLRK 144 (452)
T ss_pred HHHHH
Confidence 34333
No 111
>PRK06091 membrane protein FdrA; Validated
Probab=84.07 E-value=8.6 Score=41.50 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=66.9
Q ss_pred CceeeccCCCC----------HHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhh-hc
Q 014512 299 GNYAEYSGAPN----------EGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKL-KA 367 (423)
Q Consensus 299 aN~lD~gG~a~----------~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~-~~ 367 (423)
-.++|+|-|.. |. ...+.+++ ...||.+..||+.+.-|.-...|-| ..++.++++.+... ..
T Consensus 373 h~~iDlGdD~~T~GrpHPMIDp~---~R~~~~~~-~a~dp~~~VillD~vlGyGah~dpa---~~l~~ai~~~~~~~~~~ 445 (555)
T PRK06091 373 HQIIDLGDDFYTVGRPHPMIDPT---LRNQLIAD-LGAKPQVRVLLLDVVIGFGATADPA---GSLVSAIQKACAARADG 445 (555)
T ss_pred ceEEecCcccccCCCCCCCcChH---HHHHHHHH-hccCCcceEEEEEeeeccCCCCChH---HHHHHHHHHHHhhhhcC
Confidence 37899998753 22 12222222 1239999999988722222234445 55666655543111 12
Q ss_pred cceeEEEEeCCCC-----HHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 368 ARMHLYVRRGGPN-----YQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 368 ~~~pivvrl~G~~-----~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+.+++|+-+.||. .++.++.|. ++|+-++ +|-.+|++.|.++++
T Consensus 446 r~l~~v~~v~GT~~DpQ~~~~q~~~L~----~aGv~v~-----~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 446 QPLYAIATVTGTERDPQCRSQQIATLE----DAGIAVV-----DSLPEATLLAAALIR 494 (555)
T ss_pred CceEEEEEEeCCCCCCcCHHHHHHHHH----hCCeEEE-----cCcHHHHHHHHHHhh
Confidence 4477777788864 457788888 7999766 788999999999875
No 112
>PRK10949 protease 4; Provisional
Probab=83.53 E-value=3.6 Score=45.19 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
|....+.+.+.++...+ |+++++|++-+ |||-.-.. +-|-++++..+. .++||++.+++.-+
T Consensus 345 g~~~~~~~~~~l~~a~~----D~~vkaVvLrInSpGGs~~as------e~i~~~i~~~r~----~gKPVvas~~~~aA 408 (618)
T PRK10949 345 GNVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS------EVIRAELAAARA----AGKPVVVSMGGMAA 408 (618)
T ss_pred CCcCHHHHHHHHHHHHh----CCCCcEEEEEecCCCCcHHHH------HHHHHHHHHHHh----cCCcEEEEECCCCc
Confidence 45667788888887777 99999999888 77643222 444455555431 36899999987543
No 113
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=82.99 E-value=7.8 Score=35.18 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=47.4
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCC
Q 014512 303 EYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPN 380 (423)
Q Consensus 303 D~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~ 380 (423)
+..|..+.+.+.++++.+.+ ||++++|++.+ +||-. .. . +-+-+++++... .++||++.+.|.-
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~----d~~v~~vvl~~~~~gg~~--~~-~---~~~~~~i~~~~~----~~kpVia~v~G~a 82 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSV--TA-S---EVIRAELAAARA----AGKPVVASGGGNA 82 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhc----CCCceEEEEEeeCCCcCH--HH-H---HHHHHHHHHHHh----CCCCEEEEECCch
Confidence 45667788889999988877 99999999888 44421 11 1 333334444431 4699999998876
Q ss_pred HHHHHHHH
Q 014512 381 YQRGLAKM 388 (423)
Q Consensus 381 ~~~a~~~l 388 (423)
..-|-.+.
T Consensus 83 ~g~g~~la 90 (177)
T cd07014 83 ASGGYWIS 90 (177)
T ss_pred hHHHHHHH
Confidence 65554443
No 114
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=82.50 E-value=2.7 Score=40.40 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=62.5
Q ss_pred EecCCCcEEEEEcCCcHHHHHHHHhhccCC-CCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCcEEEEEe-cCCC
Q 014512 265 VLNPKGRIWTMVAGGGASVIYADTVGDLGY-ASELGNYAEYSGAPNE-GEVLQYARVVIDCATADPDGRKRALVI-GGGI 341 (423)
Q Consensus 265 ~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~-gg~paN~lD~gG~a~~-~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi 341 (423)
++.-.|.|||++-.|=+ |..++.+--. |---.-.+-+||||-. ..+-.++++.|+ ||..++|+++- .||-
T Consensus 172 ~Ihk~G~IGIVSRSGTL---TYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~----D~~t~GIiliGEIGG~ 244 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSGTL---TYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLE----DPETEGIILIGEIGGS 244 (329)
T ss_pred ccccCCeeEEEecCCce---eehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhc----CcccceEEEEeccCCh
Confidence 34456999999886643 4555533100 1011334557777643 467789998888 99999998887 7776
Q ss_pred cchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH
Q 014512 342 ANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL 385 (423)
Q Consensus 342 ~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~ 385 (423)
+. +=| .+.+++++.. ...+|||--+.|..+-.+|
T Consensus 245 AE--e~A------A~flk~~nSg--~~~kPVvsFIAG~tAppGr 278 (329)
T KOG1255|consen 245 AE--EEA------AEFLKEYNSG--STAKPVVSFIAGVTAPPGR 278 (329)
T ss_pred hh--HHH------HHHHHHhccC--CCCCceeEEeecccCCCcc
Confidence 53 223 2356665321 2458888766654444333
No 115
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=82.50 E-value=16 Score=31.90 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=57.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
.-+|+|-+-+++++.++.. ..+.+.|.+....+-+ ... ++.+++.+++.+. ..+||+ .||.
T Consensus 29 eVidLG~~v~~e~~v~aa~--------~~~adiVglS~L~t~~--~~~---~~~~~~~l~~~gl----~~v~vi--vGG~ 89 (128)
T cd02072 29 NVVNLGVLSPQEEFIDAAI--------ETDADAILVSSLYGHG--EID---CKGLREKCDEAGL----KDILLY--VGGN 89 (128)
T ss_pred EEEECCCCCCHHHHHHHHH--------HcCCCEEEEeccccCC--HHH---HHHHHHHHHHCCC----CCCeEE--EECC
Confidence 4599999999998877765 3456666665522211 222 2777777877642 234444 4554
Q ss_pred ------CHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHH
Q 014512 380 ------NYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQ 414 (423)
Q Consensus 380 ------~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~ 414 (423)
..++-.+.|+ ++|+. -+|++.+++++++..
T Consensus 90 ~~i~~~d~~~~~~~L~----~~Gv~-~vf~pgt~~~~i~~~ 125 (128)
T cd02072 90 LVVGKQDFEDVEKRFK----EMGFD-RVFAPGTPPEEAIAD 125 (128)
T ss_pred CCCChhhhHHHHHHHH----HcCCC-EEECcCCCHHHHHHH
Confidence 2234456677 78995 578888999888764
No 116
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=82.31 E-value=17 Score=36.29 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCC-Ccee----eccCCCCHHHHHHHHHHHHhhhccCC---CCcEEEEEecCC
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASEL-GNYA----EYSGAPNEGEVLQYARVVIDCATADP---DGRKRALVIGGG 340 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~p-aN~l----D~gG~a~~~~~~~a~~~ll~~~~~~~---~~~~ilv~~~gg 340 (423)
--+||+|+.-.|.++ -|.+..... -.| .++. =+=|.-.+..+.++++.+-+ .+ .+|+|+|.=+||
T Consensus 14 p~~I~vITs~~gAa~--~D~~~~~~~-r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~----~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 14 PKRIAVITSPTGAAI--QDFLRTLKR-RNPIVEIILYPASVQGEGAAASIVSALRKANE----MGQADDFDVIIIIRGGG 86 (319)
T ss_pred CCEEEEEeCCchHHH--HHHHHHHHH-hCCCcEEEEEeccccccchHHHHHHHHHHHHh----ccccccccEEEEecCCC
Confidence 378999999988777 688865311 123 2322 23466677788899998754 33 577555544555
Q ss_pred CcchHHHHh-hHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 341 IANFTDVAA-TFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 341 i~~~~~vaa-~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
- .+|.++ .=+.+++|+-+. +.||++-+|-.... .+.|+. +.. ...||+.|++.++...
T Consensus 87 s--~eDL~~FN~e~varai~~~-------~~PvisaIGHe~D~----ti~D~v--Ad~------ra~TPtaaAe~~~~~~ 145 (319)
T PF02601_consen 87 S--IEDLWAFNDEEVARAIAAS-------PIPVISAIGHETDF----TIADFV--ADL------RAPTPTAAAELIVPDR 145 (319)
T ss_pred C--hHHhcccChHHHHHHHHhC-------CCCEEEecCCCCCc----hHHHHH--HHh------hCCCHHHHHHHHhhhH
Confidence 2 133332 114455555443 69999999986543 222221 122 2379999999887654
No 117
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=80.93 E-value=31 Score=30.25 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=59.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
.-+|+|-+-+++++-++.. ..+.++|.+..-.+-+ ... ++.+++.+++.+. ..+ .+-.||.
T Consensus 31 eVi~LG~~v~~e~~v~aa~--------~~~adiVglS~l~~~~--~~~---~~~~~~~l~~~gl----~~~--~vivGG~ 91 (134)
T TIGR01501 31 NVVNLGVLSPQEEFIKAAI--------ETKADAILVSSLYGHG--EID---CKGLRQKCDEAGL----EGI--LLYVGGN 91 (134)
T ss_pred EEEECCCCCCHHHHHHHHH--------HcCCCEEEEecccccC--HHH---HHHHHHHHHHCCC----CCC--EEEecCC
Confidence 5699999999998877765 3466767766533211 222 2677778887642 122 2446774
Q ss_pred C---HHHH---HHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 380 N---YQRG---LAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 380 ~---~~~a---~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
- .+.. ++.|+ ++|+. -+|++.+++++.+......
T Consensus 92 ~vi~~~d~~~~~~~l~----~~Gv~-~vF~pgt~~~~iv~~l~~~ 131 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFK----EMGFD-RVFAPGTPPEVVIADLKKD 131 (134)
T ss_pred cCcChhhhHHHHHHHH----HcCCC-EEECcCCCHHHHHHHHHHH
Confidence 1 1111 34566 78984 5788888998888766544
No 118
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=80.56 E-value=8 Score=38.58 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=44.3
Q ss_pred CccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEe-CCHHHHHHHHHHHhcccchhccCCccee
Q 014512 25 RELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALN-LDLAQAATFVKECLGKEMEMSECKGPIT 103 (423)
Q Consensus 25 I~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~-~s~eea~~~a~~~l~~~~~~~g~~~~v~ 103 (423)
.++| +..++.+ .+++.+..++.| |+|+||..-.+|+ ||... .+........ +.+.. . + -.
T Consensus 132 ~~vP--~T~v~~~--~~~~~~~~~~~g--~vVvKPl~G~~G~----gv~~v~~~~~~~~~~~-~~~~~-~---~----~~ 192 (312)
T TIGR01380 132 KVIP--PTLVTRD--KAEIRAFLAEHG--DIVLKPLDGMGGE----GIFRLDPGDPNFNSIL-ETMTQ-R---G----RE 192 (312)
T ss_pred CCCC--CEEEeCC--HHHHHHHHHHcC--CEEEEECCCCCCc----eEEEEcCCCccHHHHH-HHHHh-c---c----CC
Confidence 3577 7777665 577777777764 8999999876666 66543 3222222111 22110 0 1 13
Q ss_pred EEEEEeecCC--CceEEE
Q 014512 104 TFIIEPFIPH--NEEFYL 119 (423)
Q Consensus 104 ~vlVe~~~~~--~~E~yl 119 (423)
.+++|++++. +.++-+
T Consensus 193 ~~~vQ~yI~~~~~~D~Rv 210 (312)
T TIGR01380 193 PVMAQRYLPEIKEGDKRI 210 (312)
T ss_pred cEEEEeccccccCCCEEE
Confidence 5899999983 345544
No 119
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=79.23 E-value=20 Score=42.83 Aligned_cols=81 Identities=10% Similarity=0.143 Sum_probs=59.8
Q ss_pred CHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEE
Q 014512 39 NFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFY 118 (423)
Q Consensus 39 ~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~y 118 (423)
+++|..++++.+| +|+.+||----||| |++-+.+.++....+++..+.. |+.+ +.+-+-++..+-+=
T Consensus 227 ~~eegLeaae~IG-fPvMIKASEGGGGK----GIRkv~n~ddF~~lf~qv~~Ev-----PGSP---IFlMK~a~~ARHlE 293 (2196)
T KOG0368|consen 227 NVEEGLEAAEKIG-FPVMIKASEGGGGK----GIRKVENEDDFKALFKQVQNEV-----PGSP---IFLMKLADQARHLE 293 (2196)
T ss_pred CHHHHHHHHHhcC-CceEEEeccCCCCc----ceeeccchHHHHHHHHHHHhhC-----CCCc---eeeeecccCcceee
Confidence 3688999999998 89999987654555 8999999999999888876432 2222 45666666667666
Q ss_pred EEEEEeCCCCeeee
Q 014512 119 LNIVSERLGCSVSF 132 (423)
Q Consensus 119 lgi~~D~~~p~il~ 132 (423)
+=+..|.-|-+|.+
T Consensus 294 VQlLaDqYGn~IsL 307 (2196)
T KOG0368|consen 294 VQLLADQYGNVISL 307 (2196)
T ss_pred eehhhhhcCCEeEe
Confidence 77788877766543
No 120
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=79.18 E-value=6.1 Score=43.14 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 307 APNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 307 ~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
....+.+.+.++...+ ||++++|++.+ |||-+.+. +-|-++++..+. .++||++.++|.-+.-|
T Consensus 328 ~~~~~~~~~~l~~a~~----D~~VkaIVLrinSpGGs~~as------e~i~~~i~~~~~----~gKPVva~~~g~aaSgg 393 (584)
T TIGR00705 328 NTGGDTVAALLRVARS----DPDIKAVVLRINSPGGSVFAS------EIIRRELARAQA----RGKPVIVSMGAMAASGG 393 (584)
T ss_pred ccCHHHHHHHHHHHhh----CCCceEEEEEecCCCCCHHHH------HHHHHHHHHHHh----CCCcEEEEECCccccHH
Confidence 3445677777777666 99999999988 88855443 333444444432 35999999988554433
No 121
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=78.33 E-value=45 Score=29.66 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=66.4
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
+..|..-|++.+..++ + +.++++|.|-...|-- .+.+ ..+++++++.+. -.|.+-.||.-.
T Consensus 44 i~~g~~~tp~e~v~aA---~-----~~dv~vIgvSsl~g~h--~~l~---~~lve~lre~G~------~~i~v~~GGvip 104 (143)
T COG2185 44 INLGLFQTPEEAVRAA---V-----EEDVDVIGVSSLDGGH--LTLV---PGLVEALREAGV------EDILVVVGGVIP 104 (143)
T ss_pred EecCCcCCHHHHHHHH---H-----hcCCCEEEEEeccchH--HHHH---HHHHHHHHHhCC------cceEEeecCccC
Confidence 4456677777555444 3 3567777777633321 2333 889999999762 336677899888
Q ss_pred HHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 382 QRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 382 ~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
.+-.+.|+ +.|+. .+|++.++..+++...+..+.+
T Consensus 105 ~~d~~~l~----~~G~~-~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 105 PGDYQELK----EMGVD-RIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred chhHHHHH----HhCcc-eeeCCCCCHHHHHHHHHHHHHh
Confidence 87788888 78985 4688889999999888776654
No 122
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=78.22 E-value=12 Score=35.13 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=44.5
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
.|..+.+.+.++++.+.+ ||+++++++.+++.-.+.... +.+-++++.... .++||++.+.|.....+
T Consensus 18 ~~~~~~~~l~~~l~~a~~----d~~v~~ivL~~~s~Gg~~~~~----~~~~~~l~~~~~----~~kpVia~v~g~a~s~g 85 (211)
T cd07019 18 QGNVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS----EVIRAELAAARA----AGKPVVVSAGGAAASGG 85 (211)
T ss_pred CCccCHHHHHHHHHHHhh----CCCceEEEEEEcCCCcCHHHH----HHHHHHHHHHHh----CCCCEEEEECCeehhHH
Confidence 356677888888888777 999999999873222222221 233344443321 36999999988765544
Q ss_pred HHH
Q 014512 385 LAK 387 (423)
Q Consensus 385 ~~~ 387 (423)
-.+
T Consensus 86 y~l 88 (211)
T cd07019 86 YWI 88 (211)
T ss_pred HHH
Confidence 433
No 123
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=76.38 E-value=38 Score=33.42 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=70.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCC-CcEEEEEec-C---CCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEE
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPD-GRKRALVIG-G---GIANFTDVAATFNGIIQALKEKESKLKAARMHLYV 374 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~-~~~ilv~~~-g---gi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivv 374 (423)
-|.|=-|..+.+.+.+-++.+++ .+ +++++++-. | .++. ++- +.+++...+... .++||++
T Consensus 10 TPf~~dg~iD~~~~~~~i~~~i~-----~G~v~gi~~~GstGE~~~Lt~-eEr----~~~~~~~~~~~~----~~~pvi~ 75 (290)
T TIGR00683 10 VSFNEDGTINEKGLRQIIRHNID-----KMKVDGLYVGGSTGENFMLST-EEK----KEIFRIAKDEAK----DQIALIA 75 (290)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh-----CCCcCEEEECCcccccccCCH-HHH----HHHHHHHHHHhC----CCCcEEE
Confidence 45666788999999999998874 56 999998853 2 2222 221 445555554432 3689999
Q ss_pred EeCCCCHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 375 RRGGPNYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 375 rl~G~~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
-.++.+.+++.+..+.+ ++.|. |-++| ..|.++.+..+-+++.+
T Consensus 76 gv~~~~t~~~i~la~~a-~~~Gad~v~v~~P~y~--~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 76 QVGSVNLKEAVELGKYA-TELGYDCLSAVTPFYY--KFSFPEIKHYYDTIIAE 125 (290)
T ss_pred ecCCCCHHHHHHHHHHH-HHhCCCEEEEeCCcCC--CCCHHHHHHHHHHHHhh
Confidence 99999999888877643 35674 22323 35678888888777654
No 124
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=76.08 E-value=34 Score=33.71 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=71.5
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCC-CcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGG-IANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRG 377 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~gg-i~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~ 377 (423)
-.|+|=-|..+.+.+.+-++.+++ ..++++++++-..| ....+. . --..+++...+... .++||++-.|
T Consensus 12 ~TPf~~dg~iD~~~~~~li~~l~~----~~Gv~gi~v~GstGE~~~Ls~-e-Er~~~~~~~~~~~~----~~~~viagvg 81 (293)
T PRK04147 12 LTPFDEDGQIDEQGLRRLVRFNIE----KQGIDGLYVGGSTGEAFLLST-E-EKKQVLEIVAEEAK----GKVKLIAQVG 81 (293)
T ss_pred ECcCCCCCCcCHHHHHHHHHHHHh----cCCCCEEEECCCccccccCCH-H-HHHHHHHHHHHHhC----CCCCEEecCC
Confidence 356677789999999998888873 37899999886322 222111 1 11445555444432 3589999999
Q ss_pred CCCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 378 GPNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 378 G~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
.++.+++.+..+.+ ++.|. |.| | ..|.++.++.+-+++.+
T Consensus 82 ~~~t~~ai~~a~~a-~~~Gad~v~v~~P~y-~--~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 82 SVNTAEAQELAKYA-TELGYDAISAVTPFY-Y--PFSFEEICDYYREIIDS 128 (293)
T ss_pred CCCHHHHHHHHHHH-HHcCCCEEEEeCCcC-C--CCCHHHHHHHHHHHHHh
Confidence 98989888777643 35675 554 2 24667778788777765
No 125
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=75.31 E-value=39 Score=33.72 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=68.3
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR 383 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~ 383 (423)
.|..+.+.+.+.++.++ +.++++++++- .|-....+. .--+.++++..+... -++||++-.+.++.++
T Consensus 23 ~g~iD~~~l~~lv~~li-----~~Gv~Gi~v~GstGE~~~Lt~--eEr~~v~~~~~~~~~----grvpvi~Gv~~~~t~~ 91 (309)
T cd00952 23 TDTVDLDETARLVERLI-----AAGVDGILTMGTFGECATLTW--EEKQAFVATVVETVA----GRVPVFVGATTLNTRD 91 (309)
T ss_pred CCCcCHHHHHHHHHHHH-----HcCCCEEEECcccccchhCCH--HHHHHHHHHHHHHhC----CCCCEEEEeccCCHHH
Confidence 37889999999888887 47899999886 333222221 011455655555432 3699999999999999
Q ss_pred HHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 384 GLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 384 a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+.+..+.+. +.|. |.| | ..|.++.++.+-.++.++
T Consensus 92 ai~~a~~A~-~~Gad~vlv~~P~y-~--~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 92 TIARTRALL-DLGADGTMLGRPMW-L--PLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred HHHHHHHHH-HhCCCEEEECCCcC-C--CCCHHHHHHHHHHHHHhC
Confidence 988887443 4563 332 3 246688888887777653
No 126
>PRK05246 glutathione synthetase; Provisional
Probab=73.87 E-value=15 Score=36.63 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=41.9
Q ss_pred ccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEe-CCHHHHHHHHHHHhcccchhccCCcceeE
Q 014512 26 ELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALN-LDLAQAATFVKECLGKEMEMSECKGPITT 104 (423)
Q Consensus 26 ~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~-~s~eea~~~a~~~l~~~~~~~g~~~~v~~ 104 (423)
++| +..++++ .+++.+..++.+ |+|+||..-.+|+ ||... .+..+.....+ .+.. . + -..
T Consensus 134 ~vP--~T~~~~~--~~~~~~~~~~~~--~vVlKP~~G~~G~----gV~~i~~~~~~~~~~~~-~l~~-~---~----~~~ 194 (316)
T PRK05246 134 LMP--PTLVTRD--KAEIRAFRAEHG--DIILKPLDGMGGA----GIFRVKADDPNLGSILE-TLTE-H---G----REP 194 (316)
T ss_pred cCC--CEEEeCC--HHHHHHHHHHCC--CEEEEECCCCCcc----ceEEEeCCCccHHHHHH-HHHH-c---c----CCe
Confidence 467 7777765 577777777764 8999999877677 66555 33222222222 2211 0 1 135
Q ss_pred EEEEeecCC
Q 014512 105 FIIEPFIPH 113 (423)
Q Consensus 105 vlVe~~~~~ 113 (423)
+++|++++.
T Consensus 195 ~lvQ~~I~~ 203 (316)
T PRK05246 195 VMAQRYLPE 203 (316)
T ss_pred EEEEecccc
Confidence 899999974
No 127
>PLN02417 dihydrodipicolinate synthase
Probab=72.60 E-value=51 Score=32.28 Aligned_cols=108 Identities=8% Similarity=0.022 Sum_probs=71.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
.|.|=-|..+.+.+.+-++.+++ .++++++++-..|=...-... --.-+++...+... .++||++..+.+
T Consensus 11 TPf~~~g~iD~~~~~~~i~~l~~-----~Gv~Gi~~~GstGE~~~ls~~-Er~~~~~~~~~~~~----~~~pvi~gv~~~ 80 (280)
T PLN02417 11 TPYLPDGRFDLEAYDSLVNMQIE-----NGAEGLIVGGTTGEGQLMSWD-EHIMLIGHTVNCFG----GKIKVIGNTGSN 80 (280)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccCcchhhCCHH-HHHHHHHHHHHHhC----CCCcEEEECCCc
Confidence 56677789999999999998884 689999988633321111111 11345554444322 368999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+.+++.+..+.+. ++|. |.| | ..|.++.++.+-.++.+
T Consensus 81 ~t~~~i~~a~~a~-~~Gadav~~~~P~y-~--~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 81 STREAIHATEQGF-AVGMHAALHINPYY-G--KTSQEGLIKHFETVLDM 125 (280)
T ss_pred cHHHHHHHHHHHH-HcCCCEEEEcCCcc-C--CCCHHHHHHHHHHHHhh
Confidence 9999988887543 5664 433 2 25678888888776653
No 128
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=72.20 E-value=19 Score=37.18 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=62.7
Q ss_pred ceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCcee--eccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---
Q 014512 263 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA--EYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI--- 337 (423)
Q Consensus 263 ~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~l--D~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--- 337 (423)
.|++++++++.++.||. .+=--.|++..+ |.+. -.+ +-|-..+++.+.++++ + +|+++.+.+.|
T Consensus 74 ~sl~~pgdkVLv~~nG~-FG~R~~~ia~~~--g~~v-~~~~~~wg~~v~p~~v~~~L~---~----~~~~~~V~~vH~ET 142 (383)
T COG0075 74 ASLVEPGDKVLVVVNGK-FGERFAEIAERY--GAEV-VVLEVEWGEAVDPEEVEEALD---K----DPDIKAVAVVHNET 142 (383)
T ss_pred HhccCCCCeEEEEeCCh-HHHHHHHHHHHh--CCce-EEEeCCCCCCCCHHHHHHHHh---c----CCCccEEEEEeccC
Confidence 35688899999999998 666667999884 5553 222 2457788999988877 3 89999999998
Q ss_pred cCCCcchHHHHhhHHHHHHHHHHhh
Q 014512 338 GGGIANFTDVAATFNGIIQALKEKE 362 (423)
Q Consensus 338 ~ggi~~~~~vaa~~~gii~a~~~~~ 362 (423)
.+|+.+.. +.|.++.|++.
T Consensus 143 STGvlnpl------~~I~~~~k~~g 161 (383)
T COG0075 143 STGVLNPL------KEIAKAAKEHG 161 (383)
T ss_pred cccccCcH------HHHHHHHHHcC
Confidence 67887742 57778888874
No 129
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=71.23 E-value=21 Score=33.36 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 308 PNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
.+.+.+.++++.+.+ |+++++|++.+ +||-. .. .+.+.+++++.+ .++|+++.+.|.....+
T Consensus 13 ~s~~~l~~~l~~a~~----d~~i~~vvl~~~s~Gg~~--~~----~~~l~~~i~~~~-----~~kpvia~v~g~a~s~g 76 (207)
T TIGR00706 13 VSPEDFDKKIKRIKD----DKSIKALLLRINSPGGTV--VA----SEEIYEKLKKLK-----AKKPVVASMGGVAASGG 76 (207)
T ss_pred cCHHHHHHHHHHHhh----CCCccEEEEEecCCCCCH--HH----HHHHHHHHHHhc-----CCCCEEEEECCccchHH
Confidence 456777788887776 99999999877 45432 11 255667777663 25899999888654434
No 130
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=71.13 E-value=56 Score=32.27 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=71.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCC-Ccc--hHHHHhhHHHHHHHHHHhhhhhhccceeEEEE
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGG-IAN--FTDVAATFNGIIQALKEKESKLKAARMHLYVR 375 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~gg-i~~--~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr 375 (423)
-.|.|=.|..+.+.+.+-++.++ +.++++++++-..| ... .++- .-+++...+... .++||++-
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~-----~~Gv~gi~v~GstGE~~~Ls~~Er----~~l~~~~~~~~~----g~~pvi~g 75 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQI-----EGGSHAISVGGTSGEPGSLTLEER----KQAIENAIDQIA----GRIPFAPG 75 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccCcccccCCHHHH----HHHHHHHHHHhC----CCCcEEEE
Confidence 35677789999999999999988 46899999886322 211 1222 334444333321 36899999
Q ss_pred eCCCCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 376 RGGPNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
.+.++.+++.+..+.+ .+.|. |.| | ..+.++.++.+-.++.++
T Consensus 76 v~~~~t~~ai~~a~~A-~~~Gad~v~v~pP~y-~--~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 76 TGALNHDETLELTKFA-EEAGADAAMVIVPYY-N--KPNQEALYDHFAEVADAV 125 (294)
T ss_pred CCcchHHHHHHHHHHH-HHcCCCEEEEcCccC-C--CCCHHHHHHHHHHHHHhc
Confidence 9999999888877754 35664 433 2 246688888887777653
No 131
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=70.99 E-value=17 Score=34.33 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
+...+.+.+.++++-+.+ ||++++|++.+ +|| ...+ . +.+-++++..+. .++||++...+
T Consensus 26 ~~~~~~~~l~~~l~~a~~----d~~ik~vvL~~~s~gg--~~~~-~---~el~~~i~~~~~----~~kpVia~~~~ 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAE----DDRIKGIVLDLDGLSG--GLAK-L---EELRQALERFRA----SGKPVIAYADG 87 (222)
T ss_pred cCCccHHHHHHHHHHHhc----CCCeEEEEEECCCCCC--CHHH-H---HHHHHHHHHHHH----hCCeEEEEeCC
Confidence 345566677777776665 99999999998 554 2222 1 555666665542 36899888665
No 132
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=68.47 E-value=69 Score=31.07 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=70.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec-CCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG-GGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~-ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
-|.|=.|..+.+.+.+-++.+++ .++++++++-. |-....+. . --+.+++...+... .++||++-.++
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~~-----~Gv~gi~~~GstGE~~~ls~-~-Er~~l~~~~~~~~~----~~~~vi~gv~~ 75 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLIE-----AGVDGLVVLGTTGEAPTLTD-E-ERKEVIEAVVEAVA----GRVPVIAGVGA 75 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECCCCcccccCCH-H-HHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 34555688999999999998885 58999998863 32222221 1 01455555555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++.+++.+..+.+. ++|. |.| | ..+.++.++.+-.++.+
T Consensus 76 ~~~~~~i~~a~~a~-~~Gad~v~v~pP~y-~--~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 76 NSTREAIELARHAE-EAGADGVLVVPPYY-N--KPSQEGIVAHFKAVADA 121 (281)
T ss_pred ccHHHHHHHHHHHH-HcCCCEEEECCCcC-C--CCCHHHHHHHHHHHHhc
Confidence 99998888776442 4563 333 2 24678888888777665
No 133
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=68.12 E-value=46 Score=34.92 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=72.2
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCC-Cce----eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASEL-GNY----AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~p-aN~----lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
--+||+|+.-.|.+. -|.+..... -.| .++ .-+=|.-.+..+.++++.+-. .+++|+|+|.=.||-
T Consensus 129 p~~i~vits~~~aa~--~D~~~~~~~-r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~----~~~~dviii~RGGGs-- 199 (432)
T TIGR00237 129 PKRVGVITSQTGAAL--ADILHILKR-RDPSLKVVIYPTLVQGEGAVQSIVESIELANT----KNECDVLIVGRGGGS-- 199 (432)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHh-hCCCceEEEecccccCccHHHHHHHHHHHhhc----CCCCCEEEEecCCCC--
Confidence 478999999998776 688765311 124 232 234466667778888887643 455775555445552
Q ss_pred hHHHHh-hHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 344 FTDVAA-TFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 344 ~~~vaa-~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
.+|.++ .=+.+++++-. .+.||+.-+|-.... .+.|+. +.. ...||+.|++.++-
T Consensus 200 ~eDL~~Fn~e~~~rai~~-------~~~Pvis~iGHe~D~----ti~D~v--Ad~------ra~TPtaaae~~~p 255 (432)
T TIGR00237 200 LEDLWSFNDEKVARAIFL-------SKIPIISAVGHETDF----TISDFV--ADL------RAPTPSAAAEIVSP 255 (432)
T ss_pred HHHhhhcCcHHHHHHHHc-------CCCCEEEecCcCCCc----cHHHHh--hhc------cCCCcHHHHHHhCc
Confidence 244442 11445555544 369999999985433 222221 223 23799999988753
No 134
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=68.08 E-value=35 Score=31.69 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR 383 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~ 383 (423)
|......+.++++.+.+ ||++++|++.+ +||-.. . . +.+.++++.... .++|+++...|.....
T Consensus 15 ~~~~~~~l~~~l~~a~~----d~~i~~ivl~~~s~Gg~~~--~-~---~~i~~~i~~~~~----~~kpvia~v~g~~~s~ 80 (208)
T cd07023 15 GGIGADSLIEQLRKARE----DDSVKAVVLRINSPGGSVV--A-S---EEIYREIRRLRK----AKKPVVASMGDVAASG 80 (208)
T ss_pred CCCCHHHHHHHHHHHHh----CCCCcEEEEEEECCCCCHH--H-H---HHHHHHHHHHHh----cCCcEEEEECCcchhH
Confidence 45667777788887766 99999988877 444221 1 1 344445554431 3689999988865544
Q ss_pred HH
Q 014512 384 GL 385 (423)
Q Consensus 384 a~ 385 (423)
+-
T Consensus 81 g~ 82 (208)
T cd07023 81 GY 82 (208)
T ss_pred HH
Confidence 43
No 135
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=67.72 E-value=96 Score=28.07 Aligned_cols=115 Identities=9% Similarity=0.085 Sum_probs=73.2
Q ss_pred HHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEE---ecCCCcchHHHHhhHHHHHHHH
Q 014512 282 SVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALV---IGGGIANFTDVAATFNGIIQAL 358 (423)
Q Consensus 282 ~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~---~~ggi~~~~~vaa~~~gii~a~ 358 (423)
---+.|.|..+ |....|. |+--=|-.-.+--+++.+++ ..+.|+++.. |=|....++-|+ +++.+.+
T Consensus 29 l~gA~~~l~~~--G~~~~~i-~v~~VPGA~EiP~~a~~l~~----~~~yDaiIaLG~VIrGeT~H~e~V~---~~v~~gl 98 (158)
T PRK12419 29 RKGFVAEIAAR--GGAASQV-DIFDVPGAFEIPLHAQTLAK----TGRYAAIVAAALVVDGGIYRHEFVA---QAVIDGL 98 (158)
T ss_pred HHHHHHHHHHc--CCCccce-EEEECCcHHHHHHHHHHHHh----cCCCCEEEEEEEEEcCCCchhHHHH---HHHHHHH
Confidence 33467888875 5555554 44444444456666666665 5668988876 357777777776 7777777
Q ss_pred HHhhhhhhccceeEEEE-eCCCCHHHHH--HHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 359 KEKESKLKAARMHLYVR-RGGPNYQRGL--AKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 359 ~~~~~~~~~~~~pivvr-l~G~~~~~a~--~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
.+..-. .++||... +.-.|.+++. +-+. .+|.. .-=.||+..++++++
T Consensus 99 ~~vsl~---~~~PV~fGVLT~~~~eqA~~rqa~~----Ra~~~-------nKG~eaA~aalem~~ 149 (158)
T PRK12419 99 MRVQLD---TEVPVFSVVLTPHHFHESEEHHDFF----RAHFV-------VKGAEAAHACADTLL 149 (158)
T ss_pred HHHHhc---cCCCEEEEecCCCcHHHHHHHHHHh----hcCcc-------ccHHHHHHHHHHHHH
Confidence 766532 57997777 7777767443 3343 34432 234689999998875
No 136
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=66.84 E-value=70 Score=31.81 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=68.3
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
-|..+.+.+.+.++.+++ .++++++++-.+|-........ -+.+++...+... .++||++-.|+++-+++
T Consensus 19 dg~vD~~a~~~lv~~li~-----~Gv~gi~~~GttGE~~~Ls~eE-r~~v~~~~v~~~~----grvpviaG~g~~~t~ea 88 (299)
T COG0329 19 DGSVDEEALRRLVEFLIA-----AGVDGLVVLGTTGESPTLTLEE-RKEVLEAVVEAVG----GRVPVIAGVGSNSTAEA 88 (299)
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECCCCccchhcCHHH-HHHHHHHHHHHHC----CCCcEEEecCCCcHHHH
Confidence 367999999999998885 6799999987554332221111 1344555555432 36999999999999999
Q ss_pred HHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 385 LAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 385 ~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
.++-+.+ ++.|+ |-|++ ..+.++....|-..+.+
T Consensus 89 i~lak~a-~~~Gad~il~v~PyY~--k~~~~gl~~hf~~ia~a 128 (299)
T COG0329 89 IELAKHA-EKLGADGILVVPPYYN--KPSQEGLYAHFKAIAEA 128 (299)
T ss_pred HHHHHHH-HhcCCCEEEEeCCCCc--CCChHHHHHHHHHHHHh
Confidence 8887643 35663 22333 35567777777666654
No 137
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=66.77 E-value=89 Score=30.62 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=69.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCC-Ccch--HHHHhhHHHHHHHHHHhhhhhhccceeEEEE
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGG-IANF--TDVAATFNGIIQALKEKESKLKAARMHLYVR 375 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~gg-i~~~--~~vaa~~~gii~a~~~~~~~~~~~~~pivvr 375 (423)
-.|.|=.|..+.+.+.+-++.++ +.++++++++-..| .... ++= .-+++...+... .++||++-
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~-----~~Gv~gi~~~Gs~GE~~~ls~~Er----~~~~~~~~~~~~----~~~~vi~g 76 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLI-----ANGTDGLVVVGTTGESPTLTHEEH----EELIRAVVEAVN----GRVPVIAG 76 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECCcCCccccCCHHHH----HHHHHHHHHHhC----CCCcEEee
Confidence 35666678999999999999888 47899999886332 1111 221 345554444432 35899999
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCce------eecCCCCCHHHHHHHHHHHHHh
Q 014512 376 RGGPNYQRGLAKMRALAEEIGLPI------EVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gip~------~~~g~~~t~~~av~~~v~~~~~ 421 (423)
.++.+.+++.+..+.+. ++|... ++| ..+.++.++.+-.++.+
T Consensus 77 v~~~~~~~~i~~a~~a~-~~G~d~v~~~pP~~~--~~~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 77 TGSNSTAEAIELTKFAE-KAGADGALVVTPYYN--KPTQEGLYQHFKAIAEA 125 (292)
T ss_pred cCCchHHHHHHHHHHHH-HcCCCEEEECCCcCC--CCCHHHHHHHHHHHHhc
Confidence 99988999988877543 466421 222 24667777777666654
No 138
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=66.44 E-value=43 Score=29.51 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH
Q 014512 309 NEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL 385 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~ 385 (423)
+.+.+.+.++.+-+ |+++++|++.+ +||-. . .. ..|.+++++. ++|+++...|.-...+-
T Consensus 12 ~~~~l~~~l~~a~~----d~~~~~ivl~~~s~Gg~~--~-~~---~~i~~~l~~~-------~kpvva~~~g~~~s~g~ 73 (161)
T cd00394 12 SADQLAAQIRFAEA----DNSVKAIVLEVNTPGGRV--D-AG---MNIVDALQAS-------RKPVIAYVGGQAASAGY 73 (161)
T ss_pred hHHHHHHHHHHHHh----CCCCceEEEEEECCCcCH--H-HH---HHHHHHHHHh-------CCCEEEEECChhHHHHH
Confidence 34445555554444 88899988876 66622 1 12 5667777665 48999998886655443
No 139
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.79 E-value=77 Score=30.87 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=69.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecC-CCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGG-GIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~g-gi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
.|.|=-|..+.+.+.+-++.++ +.++++++++-.. -....+. . --+-+++...+... .++||++..++
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~-----~~Gv~gl~v~GstGE~~~lt~-~-Er~~l~~~~~~~~~----~~~~vi~gv~~ 78 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQI-----ENGTDGLVVCGTTGESPTLSD-E-EHEAVIEAVVEAVN----GRVPVIAGTGS 78 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECCCCcchhhCCH-H-HHHHHHHHHHHHhC----CCCcEEeccCC
Confidence 4556678899999988888887 4789999988632 2222211 1 11455665555432 35899999999
Q ss_pred CCHHHHHHHHHhhhhhcCCce------eecCCCCCHHHHHHHHHHHHHh
Q 014512 379 PNYQRGLAKMRALAEEIGLPI------EVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gip~------~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++.+++.+..+.+. ++|+.. ++| ..+.++.++.+-.++.+
T Consensus 79 ~~~~~~~~~a~~a~-~~G~d~v~~~~P~~~--~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 79 NNTAEAIELTKRAE-KAGADAALVVTPYYN--KPSQEGLYAHFKAIAEA 124 (284)
T ss_pred ccHHHHHHHHHHHH-HcCCCEEEEcccccC--CCCHHHHHHHHHHHHhc
Confidence 99999988887543 567431 222 13556777666665543
No 140
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=63.18 E-value=92 Score=30.86 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=67.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.|=-|..+.+.+.+-++.+++ .++++++++-.+|-...-... --.-+++...+... .++||++..++
T Consensus 16 vTPf~~dg~iD~~~l~~li~~l~~-----~Gv~Gi~~~GstGE~~~Lt~e-Er~~~~~~~~~~~~----~~~pvi~gv~~ 85 (303)
T PRK03620 16 VTPFDADGSFDEAAYREHLEWLAP-----YGAAALFAAGGTGEFFSLTPD-EYSQVVRAAVETTA----GRVPVIAGAGG 85 (303)
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECcCCcCcccCCHH-HHHHHHHHHHHHhC----CCCcEEEecCC
Confidence 356666788999999998998874 689999988632221111111 01345554444321 35899998876
Q ss_pred CCHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+..++.+..+.+ +++|. |=|++ ..+.++.+..+-.++.++
T Consensus 86 -~t~~~i~~~~~a-~~~Gadav~~~pP~y~--~~~~~~i~~~f~~va~~~ 131 (303)
T PRK03620 86 -GTAQAIEYAQAA-ERAGADGILLLPPYLT--EAPQEGLAAHVEAVCKST 131 (303)
T ss_pred -CHHHHHHHHHHH-HHhCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 788888877754 34663 22222 246677777777776653
No 141
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=62.22 E-value=93 Score=30.39 Aligned_cols=110 Identities=12% Similarity=0.158 Sum_probs=70.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCC-CcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGG-IANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~gg-i~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
-|.+-.|..+.+.+.+-++.+++ .++++++++-.+| ..+.+. . --+-+++...+... .++||++..++
T Consensus 11 TPf~~dg~id~~~~~~~i~~l~~-----~Gv~gl~~~GstGE~~~Lt~-~-Er~~l~~~~~~~~~----~~~~vi~gv~~ 79 (289)
T PF00701_consen 11 TPFNADGSIDEDALKRLIDFLIE-----AGVDGLVVLGSTGEFYSLTD-E-ERKELLEIVVEAAA----GRVPVIAGVGA 79 (289)
T ss_dssp --BETTSSB-HHHHHHHHHHHHH-----TTSSEEEESSTTTTGGGS-H-H-HHHHHHHHHHHHHT----TSSEEEEEEES
T ss_pred CCCCCCcCcCHHHHHHHHHHHHH-----cCCCEEEECCCCcccccCCH-H-HHHHHHHHHHHHcc----CceEEEecCcc
Confidence 45666788999999999998885 5799999875322 222211 1 11445555555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCCceee-----cCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGLPIEV-----YGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gip~~~-----~g~~~t~~~av~~~v~~~~~~ 422 (423)
.+.+++.+..+.+. ++|+.... | ...|.++.++.+-.++.++
T Consensus 80 ~st~~~i~~a~~a~-~~Gad~v~v~~P~~-~~~s~~~l~~y~~~ia~~~ 126 (289)
T PF00701_consen 80 NSTEEAIELARHAQ-DAGADAVLVIPPYY-FKPSQEELIDYFRAIADAT 126 (289)
T ss_dssp SSHHHHHHHHHHHH-HTT-SEEEEEESTS-SSCCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHh-hcCceEEEEecccc-ccchhhHHHHHHHHHHhhc
Confidence 99999999887553 56643221 1 1257888888887777553
No 142
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=61.84 E-value=1.1e+02 Score=30.13 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=65.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
-|.|=-|..+.+.+.+-++.++ +.++++++++- .|-....+. . --+.+++...+... .++||++-.+.
T Consensus 15 TPf~~dg~iD~~~l~~li~~l~-----~~Gv~gi~v~GstGE~~~Lt~-e-Er~~v~~~~~~~~~----g~~pvi~gv~~ 83 (296)
T TIGR03249 15 TPFDADGSFDEAAYRENIEWLL-----GYGLEALFAAGGTGEFFSLTP-A-EYEQVVEIAVSTAK----GKVPVYTGVGG 83 (296)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----hcCCCEEEECCCCcCcccCCH-H-HHHHHHHHHHHHhC----CCCcEEEecCc
Confidence 4566678889888888888877 46889999875 333322221 1 11445554444331 35889988875
Q ss_pred CCHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 379 PNYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+.+++.+..+.+ .+.|. |=|+|. .+.++.++.+-.++.+
T Consensus 84 -~t~~ai~~a~~a-~~~Gadav~~~pP~y~~--~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 84 -NTSDAIEIARLA-EKAGADGYLLLPPYLIN--GEQEGLYAHVEAVCES 128 (296)
T ss_pred -cHHHHHHHHHHH-HHhCCCEEEECCCCCCC--CCHHHHHHHHHHHHhc
Confidence 678887777643 34563 222222 4567777777666554
No 143
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=61.43 E-value=4.3 Score=45.97 Aligned_cols=89 Identities=9% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCccee
Q 014512 24 GRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPIT 103 (423)
Q Consensus 24 GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~ 103 (423)
+.++. +...+++ .++|.++++++| |||++.+--..||- |-.++.+.+|..+.+.+-+.. -.
T Consensus 510 ~e~ia--~s~a~~s--ie~al~aae~l~-ypvivRaayalggl----gSgfa~n~eeL~~l~~~a~a~----------s~ 570 (1435)
T KOG0370|consen 510 NEKIA--PSEAVST--IEEALEAAERLG-YPVIVRAAYALGGL----GSGFANNEEELQDLAAQALAL----------SP 570 (1435)
T ss_pred ccccc--chhhHhH--HHHHHHHHHhcC-cHHHHHHHHHhcCc----cccccccHHHHHHHHhhcccc----------Cc
Confidence 44444 5555554 699999999998 89988766544443 335678888888766655432 24
Q ss_pred EEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 104 TFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 104 ~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
++|||+.+.+-+|.=.-+.+|..+-+|.
T Consensus 571 QilvekSlkGwkevEyevvrDa~~nciT 598 (1435)
T KOG0370|consen 571 QILVEKSLKGWKEVEYEVVRDAYDNCIT 598 (1435)
T ss_pred eeeehhhhccccceEEEEEeccccchhh
Confidence 6899999987677777788887643333
No 144
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=60.25 E-value=56 Score=30.57 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQ 382 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~ 382 (423)
.+......+.++++.+.+ ||++++|++.+ +||- ... . +.+.++++..+ . ++||++.+.|.-..
T Consensus 22 ~~~~~~~~l~~~l~~a~~----d~~i~~Vvl~~~s~gg~--~~~-~---~~l~~~l~~~~----~-~KpViA~v~g~a~s 86 (214)
T cd07022 22 SGLTSYEGIAAAIRAALA----DPDVRAIVLDIDSPGGE--VAG-V---FELADAIRAAR----A-GKPIVAFVNGLAAS 86 (214)
T ss_pred CCcccHHHHHHHHHHHhh----CCCCcEEEEEEeCCCCc--HHH-H---HHHHHHHHHHh----c-CCCEEEEECCchhh
Confidence 345567778888887776 99999999977 4442 111 1 44556666553 1 58999998885444
Q ss_pred HH
Q 014512 383 RG 384 (423)
Q Consensus 383 ~a 384 (423)
.|
T Consensus 87 ~g 88 (214)
T cd07022 87 AA 88 (214)
T ss_pred HH
Confidence 33
No 145
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=59.82 E-value=24 Score=32.35 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=34.7
Q ss_pred cCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeE-EeCCHHHHHHHHHHHhcccchhccCCcceeEE
Q 014512 27 LPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVA-LNLDLAQAATFVKECLGKEMEMSECKGPITTF 105 (423)
Q Consensus 27 vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~-l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~v 105 (423)
+| +..++++ .+++....++-+ -+||||-.-.||| ||. +..+.....+..+.+... + -..+
T Consensus 12 ~P--~T~vs~~--~~~i~~f~~~~~--~~VlKPl~g~gG~----gV~~i~~~~~n~~~i~e~~~~~-----~----~~~~ 72 (173)
T PF02955_consen 12 IP--PTLVSRD--KEEIRAFIEEHG--DIVLKPLDGMGGR----GVFRISRDDPNLNSILETLTKN-----G----ERPV 72 (173)
T ss_dssp S----EEEES---HHHHHHHHHHHS--SEEEEESS--TTT----T-EEE-TT-TTHHHHHHHHTTT-----T----TS-E
T ss_pred Cc--CEEEECC--HHHHHHHHHHCC--CEEEEECCCCCCc----CEEEEcCCCCCHHHHHHHHHhc-----C----CccE
Confidence 56 7777776 577777777765 3999999988887 554 444422233333323211 1 1458
Q ss_pred EEEeecC
Q 014512 106 IIEPFIP 112 (423)
Q Consensus 106 lVe~~~~ 112 (423)
++|++++
T Consensus 73 mvQ~flp 79 (173)
T PF02955_consen 73 MVQPFLP 79 (173)
T ss_dssp EEEE--G
T ss_pred EEEeccc
Confidence 9999998
No 146
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.33 E-value=1.3e+02 Score=29.42 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=69.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
.|.|=-|..+.+.+.+-++.++ +.++++++++-..|-...-... .-+.+++...+... .++||++..+.+
T Consensus 8 TPf~~~g~iD~~~~~~~i~~l~-----~~Gv~Gi~~~GstGE~~~Ls~~-Er~~~~~~~~~~~~----~~~~vi~gv~~~ 77 (285)
T TIGR00674 8 TPFKEDGSVDFAALEKLIDFQI-----ENGTDAIVVVGTTGESPTLSHE-EHKKVIEFVVDLVN----GRVPVIAGTGSN 77 (285)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccCcccccCCHH-HHHHHHHHHHHHhC----CCCeEEEeCCCc
Confidence 4556678899999999888887 4789999987533322111111 11445554444321 358999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+.+++.+..+.+ ++.|. |.| |. .|.++.++.+-.++.+
T Consensus 78 s~~~~i~~a~~a-~~~Gad~v~v~pP~y-~~--~~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 78 ATEEAISLTKFA-EDVGADGFLVVTPYY-NK--PTQEGLYQHFKAIAEE 122 (285)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEcCCcC-CC--CCHHHHHHHHHHHHhc
Confidence 999988877744 34663 333 32 4667777777776654
No 147
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=57.52 E-value=1.9e+02 Score=28.36 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=69.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCC-CCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADP-DGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~-~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
.|.|=-|..+.+.+.+-++.+++ . ++++++++-..|=...-... --+.++++..+... .++||++-.+.
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~-----~~Gv~gi~~~GstGE~~~Lt~~-Er~~~~~~~~~~~~----~~~~viagv~~ 79 (288)
T cd00954 10 TPFDENGEINEDVLRAIVDYLIE-----KQGVDGLYVNGSTGEGFLLSVE-ERKQIAEIVAEAAK----GKVTLIAHVGS 79 (288)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh-----cCCCCEEEECcCCcCcccCCHH-HHHHHHHHHHHHhC----CCCeEEeccCC
Confidence 45666688999999999998884 5 88999888632221111111 01445554444432 25899999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGLP------IEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gip------~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++.+++.+..+.+ ++.|.. -++| ..|.++.++.+-..+.++
T Consensus 80 ~~~~~ai~~a~~a-~~~Gad~v~~~~P~y~--~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 80 LNLKESQELAKHA-EELGYDAISAITPFYY--KFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEeCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 8888888877643 356632 2222 246788888887776653
No 148
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=57.51 E-value=70 Score=30.62 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=64.3
Q ss_pred cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHH
Q 014512 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~ 359 (423)
|-.+. ..++...| -+-+|+|-|.+.+.+-++.+-. +|+ +| ..++... +.+. .++-|++.|+
T Consensus 120 Gk~iV-~~ml~~aG-----fevidLG~dvP~e~fve~a~e~------k~d----~v-~~SalMT-ttm~-~~~~viE~L~ 180 (227)
T COG5012 120 GKNIV-ATMLEAAG-----FEVIDLGRDVPVEEFVEKAKEL------KPD----LV-SMSALMT-TTMI-GMKDVIELLK 180 (227)
T ss_pred HHHHH-HHHHHhCC-----cEEEecCCCCCHHHHHHHHHHc------CCc----EE-echHHHH-HHHH-HHHHHHHHHH
Confidence 44443 34555432 3669999999999998877631 332 22 2233332 2222 2577888888
Q ss_pred HhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 360 EKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 360 ~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
+.+ .+-|+.|-.||....+ ++.++.|-..| ..+..+||..+-..+
T Consensus 181 eeG-----iRd~v~v~vGGApvtq------~~a~~iGAD~~----~~dAs~Av~~ak~~l 225 (227)
T COG5012 181 EEG-----IRDKVIVMVGGAPVTQ------DWADKIGADAY----AEDASDAVKKAKAIL 225 (227)
T ss_pred HcC-----CccCeEEeecCccccH------HHHHHhCCCcc----CcCHHHHHHHHHHHh
Confidence 865 4567877789964442 23335666665 368888888776654
No 149
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=54.14 E-value=1.7e+02 Score=28.80 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=62.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
-|.|=-|..+.+.+.+-++.++ +.++++++++- .|-....+. . --+.+++...+... .++||++-.+.
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~-----~~Gv~gi~v~GstGE~~~Ls~-e-Er~~l~~~~~~~~~----~~~pvi~gv~~ 78 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLL-----SYGAAALFAAGGTGEFFSLTP-D-EYAQVVRAAVEETA----GRVPVLAGAGY 78 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECcCCcCcccCCH-H-HHHHHHHHHHHHhC----CCCCEEEecCC
Confidence 3455567888888888888877 46889988875 222222111 0 01334444433321 25888888876
Q ss_pred CCHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 379 PNYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+..++.+..+.+ +++|. |-+++ ..+.++.++.+-.++.+
T Consensus 79 -~t~~~i~~a~~a-~~~Gad~v~~~pP~y~--~~~~~~i~~~f~~v~~~ 123 (289)
T cd00951 79 -GTATAIAYAQAA-EKAGADGILLLPPYLT--EAPQEGLYAHVEAVCKS 123 (289)
T ss_pred -CHHHHHHHHHHH-HHhCCCEEEECCCCCC--CCCHHHHHHHHHHHHhc
Confidence 778887766543 34553 22222 24566667776666554
No 150
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=53.98 E-value=42 Score=30.76 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH
Q 014512 312 EVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL 385 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~ 385 (423)
.+.++++...+ ++ .+.+++.+ |||...+. +.|.+.++.. ++|+++.+.|.-...|-
T Consensus 17 ~l~~~l~~a~~----~~-~~~ivl~inspGG~v~~~------~~I~~~l~~~-------~~pvva~V~g~AaSaG~ 74 (178)
T cd07021 17 FVERALKEAKE----EG-ADAVVLDIDTPGGRVDSA------LEIVDLILNS-------PIPTIAYVNDRAASAGA 74 (178)
T ss_pred HHHHHHHHHHh----CC-CCeEEEEEECcCCCHHHH------HHHHHHHHhC-------CCCEEEEECCchHHHHH
Confidence 34455554443 54 66666555 89876532 6677777764 58999999886655553
No 151
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=52.46 E-value=1.3e+02 Score=24.90 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=54.4
Q ss_pred HHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhh
Q 014512 285 YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESK 364 (423)
Q Consensus 285 ~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~ 364 (423)
..+.+... |- .-+++|.+.+++.+.+++. + .+| +.+.+.. ..+.....+ ..+++.+|+..
T Consensus 19 ~~~~l~~~--G~---~V~~lg~~~~~~~l~~~~~---~---~~p--dvV~iS~--~~~~~~~~~---~~~i~~l~~~~-- 78 (119)
T cd02067 19 VARALRDA--GF---EVIDLGVDVPPEEIVEAAK---E---EDA--DAIGLSG--LLTTHMTLM---KEVIEELKEAG-- 78 (119)
T ss_pred HHHHHHHC--CC---EEEECCCCCCHHHHHHHHH---H---cCC--CEEEEec--cccccHHHH---HHHHHHHHHcC--
Confidence 34666664 32 3378899999887655544 2 144 4344322 223333333 67777777753
Q ss_pred hhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHH
Q 014512 365 LKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQ 414 (423)
Q Consensus 365 ~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~ 414 (423)
. --+.+.+||.....--+.++ +.|+..++ .+-.+++..
T Consensus 79 ---~-~~~~i~vGG~~~~~~~~~~~----~~G~D~~~----~~~~~~~~~ 116 (119)
T cd02067 79 ---L-DDIPVLVGGAIVTRDFKFLK----EIGVDAYF----GPATEAVEV 116 (119)
T ss_pred ---C-CCCeEEEECCCCChhHHHHH----HcCCeEEE----CCHHHHHHH
Confidence 1 12556678866555345566 68886543 455556554
No 152
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.83 E-value=1.4e+02 Score=29.69 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=55.4
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec--CCC---------------------------------cchHH
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG--GGI---------------------------------ANFTD 346 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~--ggi---------------------------------~~~~~ 346 (423)
.++..+.+.+.+.+.++-+-+ |+++++++|-.| .++ .+||
T Consensus 67 ~~l~~~~~~~el~~~i~~lN~----d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcT- 141 (296)
T PRK14188 67 HKLPADTSQAELLALIARLNA----DPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATGETALVPCT- 141 (296)
T ss_pred EECCCCCCHHHHHHHHHHHhC----CCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCCCCCCcCCC-
Confidence 355667777766666665444 777888777753 332 3443
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecC-CCCCHHHHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYG-PEATMTGICK 413 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g-~~~t~~~av~ 413 (423)
..||++-++.++-.. ..+.+++. +.+..-..--..|. +.|..+.++. ...++.++++
T Consensus 142 ----p~ai~~ll~~~~i~~--~Gk~V~viGrs~~mG~PmA~~L~----~~g~tVtv~~~rT~~l~e~~~ 200 (296)
T PRK14188 142 ----PLGCMMLLRRVHGDL--SGLNAVVIGRSNLVGKPMAQLLL----AANATVTIAHSRTRDLPAVCR 200 (296)
T ss_pred ----HHHHHHHHHHhCCCC--CCCEEEEEcCCcchHHHHHHHHH----hCCCEEEEECCCCCCHHHHHh
Confidence 389999888764221 23444444 44433333333333 5799888874 3335655554
No 153
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.82 E-value=1.6e+02 Score=29.41 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=57.0
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec--CC---------------------------------CcchHH
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG--GG---------------------------------IANFTD 346 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~--gg---------------------------------i~~~~~ 346 (423)
..+..+.+.+.+.+.++-+-+ ||++++++|-.| .+ +.+||
T Consensus 68 ~~l~~~~t~~~l~~~I~~lN~----D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcT- 142 (301)
T PRK14194 68 HRLPADTSQARLLALIAELNA----DPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTPCT- 142 (301)
T ss_pred EECCCCCCHHHHHHHHHHHcC----CCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCCCc-
Confidence 456667777766666665444 777777777663 32 33443
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCC-CCHHHHHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPE-ATMTGICKQ 414 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~-~t~~~av~~ 414 (423)
..|+++-++.++-.. ..+.+++- +||..-..--..|. +.|..+.++... .++.++++.
T Consensus 143 ----p~aii~lL~~~~i~l--~Gk~V~vIG~s~ivG~PmA~~L~----~~gatVtv~~~~t~~l~e~~~~ 202 (301)
T PRK14194 143 ----PSGCLRLLEDTCGDL--TGKHAVVIGRSNIVGKPMAALLL----QAHCSVTVVHSRSTDAKALCRQ 202 (301)
T ss_pred ----HHHHHHHHHHhCCCC--CCCEEEEECCCCccHHHHHHHHH----HCCCEEEEECCCCCCHHHHHhc
Confidence 388999888764221 23444443 66544333333444 578888888433 456666554
No 154
>PRK11778 putative inner membrane peptidase; Provisional
Probab=49.14 E-value=37 Score=34.44 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=26.6
Q ss_pred cEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHH
Q 014512 331 RKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQ 382 (423)
Q Consensus 331 ~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~ 382 (423)
++|++.+ |||.+...+.++ . .++.+++ .++||++.+++..+.
T Consensus 124 ~aVvLridSpGG~v~~s~~a~--~-~l~~lr~-------~~kpVva~v~~~AAS 167 (330)
T PRK11778 124 DEVLLRLESPGGVVHGYGLAA--S-QLQRLRD-------AGIPLTVAVDKVAAS 167 (330)
T ss_pred CeEEEEEeCCCCchhHHHHHH--H-HHHHHHh-------cCCCEEEEECCchhh
Confidence 6777766 999776555552 2 2333443 358999998885543
No 155
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=47.86 E-value=2.1e+02 Score=25.73 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=67.7
Q ss_pred HHHHHhhccCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEE---ecCCCcchHHHHhhHHHHHHHH
Q 014512 284 IYADTVGDLGYASELGN--YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALV---IGGGIANFTDVAATFNGIIQAL 358 (423)
Q Consensus 284 ~~~D~l~~~g~gg~paN--~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~---~~ggi~~~~~vaa~~~gii~a~ 358 (423)
.+.|.+..+ |+...| -+++.|.-. +--+++.+++ ..+.|+++-. |=|++..++-|+ ....+.+
T Consensus 33 gA~~~l~~~--G~~~~~i~vv~VPGa~E---iPl~a~~La~----~~~yDAvv~lG~VIrG~T~Hfd~Va---~~~~~gl 100 (152)
T COG0054 33 GAVDALKRH--GADVDNIDVVRVPGAFE---IPLAAKKLAR----TGKYDAVVALGAVIRGETYHFDYVA---NEVARGL 100 (152)
T ss_pred HHHHHHHHc--CCCcccceEEEeCCcch---hHHHHHHHHh----cCCcceEEEEeeEEeCCCccHHHHH---HHHHHHH
Confidence 356888874 666653 344444433 3345666655 5568887765 457877777666 5555554
Q ss_pred HHhhhhhhccceeEEEEeCCC-CHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 359 KEKESKLKAARMHLYVRRGGP-NYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 359 ~~~~~~~~~~~~pivvrl~G~-~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
-+..- ...+||..-+-++ +.+++... +|+.-- .-=.+|+..|+++++-
T Consensus 101 ~~vsl---~~~~PV~~GVLt~~~~eqA~~r-------ag~~~g-----nkG~~Aa~aAlem~~l 149 (152)
T COG0054 101 MDVSL---ETGVPVTFGVLTTDNIEQAIER-------AGTKAG-----NKGAEAAEAALEMANL 149 (152)
T ss_pred HHHHH---hhCCCeEeeecCCCcHHHHHHH-------hCcccc-----ccHHHHHHHHHHHHHH
Confidence 44432 2479988884444 77766432 454321 2347899999999864
No 156
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=47.15 E-value=34 Score=30.44 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=32.3
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
++..+|=..=+.+-++++.+..++|+.+..-|-..||+|++++|++
T Consensus 16 lvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~ 61 (143)
T COG2185 16 LVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE 61 (143)
T ss_pred EEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh
Confidence 3334553223344455555555899999988999999999999976
No 157
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=46.76 E-value=84 Score=28.75 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC---CCCHHHH
Q 014512 310 EGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRG---GPNYQRG 384 (423)
Q Consensus 310 ~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~---G~~~~~a 384 (423)
.+.+.++++.+-+ ++ ++.|++.+ |||-... + ..+.++++.. ++|+++.+. |.-.--|
T Consensus 15 ~~~l~~~l~~a~~----~~-~~~vvl~InSpGG~v~~---~---~~i~~~l~~~-------~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 15 ADYLERAIDQAEE----GG-ADALIIELDTPGGLLDS---T---REIVQAILAS-------PVPVVVYVYPSGARAASAG 76 (187)
T ss_pred HHHHHHHHHHHHh----CC-CCEEEEEEECCCCCHHH---H---HHHHHHHHhC-------CCCEEEEEecCCCCchhHH
Confidence 3445555554443 44 77766554 8885432 2 5566666543 589998875 7666555
Q ss_pred HHHH
Q 014512 385 LAKM 388 (423)
Q Consensus 385 ~~~l 388 (423)
--+.
T Consensus 77 ~~ia 80 (187)
T cd07020 77 TYIL 80 (187)
T ss_pred HHHH
Confidence 4444
No 158
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=45.47 E-value=1e+02 Score=27.30 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=68.4
Q ss_pred HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---cCCCcchHHHHhhHHHHHHHHHH
Q 014512 284 IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI---GGGIANFTDVAATFNGIIQALKE 360 (423)
Q Consensus 284 ~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~ggi~~~~~vaa~~~gii~a~~~ 360 (423)
-+.+.|..+ |..+.|.- +--=|-+-.+--+++.+++ ..+.|+++..- -|....++-|+ +++.+.+.+
T Consensus 24 ~a~~~l~~~--g~~~~~i~-~~~VPGa~ElP~a~~~l~~----~~~~Davi~lG~VI~G~T~H~~~v~---~~v~~gl~~ 93 (144)
T PF00885_consen 24 GALEELKRH--GVAEENIE-VIRVPGAFELPLAAKRLAE----SGRYDAVIALGCVIRGETDHFEYVA---NAVSRGLMD 93 (144)
T ss_dssp HHHHHHHHT--TTTGGCEE-EEEESSGGGHHHHHHHHHH----CSTESEEEEEEEEE--SSTHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHc--CCCccceE-EEEcCCHHHHHHHHHHHhc----ccCccEEEEeccccCCCchHHHHHH---HHHHHHHHH
Confidence 366777774 44433332 2222333346667887776 66799888773 56766666555 777777776
Q ss_pred hhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 361 KESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 361 ~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
..-. .++||..- +.-.+.++++... |.... +-=.||++.++++++
T Consensus 94 lsl~---~~~PV~~gvlt~~~~eqa~~R~-------~~~~~-----nkG~eaA~aal~m~~ 139 (144)
T PF00885_consen 94 LSLE---YGIPVIFGVLTPDTEEQALERA-------GGKAG-----NKGREAAEAALEMAK 139 (144)
T ss_dssp HHHH---HTSEEEEEEEEESSHHHHHHHC-------EETTE-----EHHHHHHHHHHHHHH
T ss_pred Hhcc---CCccEEEEecCCCCHHHHHHHh-------cchhh-----hhHHHHHHHHHHHHH
Confidence 5432 47997776 7778888775443 32222 233789999999876
No 159
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.00 E-value=1.8e+02 Score=30.77 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 353 GIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 353 gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
-+...+++.+ .+|++|..-=.. -.|.+-|+.++++.|+|+|--++..+|-+.++.+++.++..
T Consensus 119 KLA~~lkk~~------~kvllVaaD~~R-pAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~ 181 (451)
T COG0541 119 KLAKYLKKKG------KKVLLVAADTYR-PAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEE 181 (451)
T ss_pred HHHHHHHHcC------CceEEEecccCC-hHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHc
Confidence 3555666632 466555533322 34556666666799999987666788999999999998853
No 160
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=44.32 E-value=48 Score=32.88 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=78.2
Q ss_pred CcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHHHH
Q 014512 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTDVA 348 (423)
Q Consensus 270 g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~va 348 (423)
-|+|++-.+.|-++..|=-+...|.||+.+|=--.=-=..-+.+-+++..+++ +++..+.+=.. |..+.+ .+.+
T Consensus 158 lRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~----~~~lsGp~N~taP~PV~~-~~F~ 232 (297)
T COG1090 158 LRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLE----NEQLSGPFNLTAPNPVRN-KEFA 232 (297)
T ss_pred EEEEEEecCCCcchhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHh----CcCCCCcccccCCCcCcH-HHHH
Confidence 57888877777788888888888788876421111111245778888888887 88877765333 666544 4455
Q ss_pred hhHHHHHHHHHHhhhhhhcccee-EEEE--eCCCCHH---HHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 349 ATFNGIIQALKEKESKLKAARMH-LYVR--RGGPNYQ---RGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 349 a~~~gii~a~~~~~~~~~~~~~p-ivvr--l~G~~~~---~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
+.+-+++.. +. ...+| ...| +|. .+. ++.+.+=+-..++|.-.. +.|.++|....+.
T Consensus 233 ---~al~r~l~R--P~--~~~vP~~~~rl~LGe-~a~~lL~gQrvlP~kl~~aGF~F~----y~dl~~AL~~il~ 295 (297)
T COG1090 233 ---HALGRALHR--PA--ILPVPSFALRLLLGE-MADLLLGGQRVLPKKLEAAGFQFQ----YPDLEEALADILK 295 (297)
T ss_pred ---HHHHHHhCC--Cc--cccCcHHHHHHHhhh-hHHHHhccchhhHHHHHHCCCeee----cCCHHHHHHHHHh
Confidence 666555432 11 13455 4555 442 222 234444344446898543 4899999887653
No 161
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.03 E-value=2.6e+02 Score=25.79 Aligned_cols=120 Identities=16% Similarity=0.060 Sum_probs=63.4
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
++|+++.+..+... -..+.+..+ |.+..-+.-+.++.+.+..+++++-+++ +.|++++++. .
T Consensus 117 ~~i~~l~~~~~~~~~~~R~~gf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 184 (269)
T cd06288 117 RRIAFINGEPWMLAAKDRLKGYRQALAEA--GIPFDPDLVVHGDWSADDGYEAAAALLD---LDDRPTAIFC-------G 184 (269)
T ss_pred ceEEEEeCCccchhHHHHHHHHHHHHHHc--CCCCCHHHeEeCCCChHHHHHHHHHHHh---CCCCCCEEEE-------e
Confidence 57888865544221 123455553 3222111122344444444455555543 3567887763 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++..| .++++++++++ .++| .++..++. ..+.+.+. -++.+. .-++++....+++++.
T Consensus 185 ~d~~a---~~~~~~l~~~g-----~~vp~di~v~g~d~~--~~~~~~~~-----~~~~ti----~~~~~~~g~~a~~~l~ 245 (269)
T cd06288 185 NDRMA---MGAYQALLERG-----LRIPQDVSVVGFDNQ--EIIAEHLR-----PPLTTV----ALPHYEMGRWAVELLL 245 (269)
T ss_pred CcHHH---HHHHHHHHHcC-----CCCcccceEEeeCCc--hhhhhccC-----CCceeE----ecCHHHHHHHHHHHHH
Confidence 24556 89999999875 2333 44446664 44444443 356554 2466777777776553
No 162
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=42.85 E-value=1.3e+02 Score=28.21 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred EEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCC-----
Q 014512 333 RALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEAT----- 407 (423)
Q Consensus 333 ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t----- 407 (423)
+.|.+.|.-+|. |+|+++++... .+.-|...+.-.....+++.-+ ++|||++++.+-+-
T Consensus 3 i~VlaSG~GSNl-------qaiida~~~~~-----~~a~i~~Visd~~~A~~lerA~----~~gIpt~~~~~k~~~~r~~ 66 (200)
T COG0299 3 IAVLASGNGSNL-------QAIIDAIKGGK-----LDAEIVAVISDKADAYALERAA----KAGIPTVVLDRKEFPSREA 66 (200)
T ss_pred EEEEEeCCcccH-------HHHHHHHhcCC-----CCcEEEEEEeCCCCCHHHHHHH----HcCCCEEEeccccCCCHHH
Confidence 344555554553 78888877432 2333666666654566666666 79999988765544
Q ss_pred HHHHHHHHHH
Q 014512 408 MTGICKQAIE 417 (423)
Q Consensus 408 ~~~av~~~v~ 417 (423)
.+.++...+.
T Consensus 67 ~d~~l~~~l~ 76 (200)
T COG0299 67 FDRALVEALD 76 (200)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 163
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=42.56 E-value=60 Score=29.12 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 309 NEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
+.+.+...+..+-+ +++.+.+.+.+ |||-.. -+ ..|.++++.. +.|+++...|.-+..|
T Consensus 13 ~~~~~~~~L~~l~~----~~~~~~i~l~InSpGG~v~---~~---~~i~~~i~~~-------~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 13 SANQFAAQLLFLGA----VNPEKDIYLYINSPGGDVF---AG---MAIYDTIKFI-------KADVVTIIDGLAASMG 73 (162)
T ss_pred HHHHHHHHHHHHhc----CCCCCCEEEEEECCCCcHH---HH---HHHHHHHHhc-------CCCceEEEEeehhhHH
Confidence 34444444444333 55566655554 888542 22 6788888876 3567777667555444
No 164
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=42.27 E-value=1.7e+02 Score=30.60 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCC-ce----eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELG-NY----AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~pa-N~----lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
--+||+|+.-.|.++ -|.+..... =.|. ++ .=+=|+-.+..+.+|++.+-+ .+.|+|+|.=+|| +
T Consensus 135 p~~I~viTs~~gAa~--~D~~~~~~~-r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~-----~~~Dviii~RGGG--S 204 (438)
T PRK00286 135 PKRIGVITSPTGAAI--RDILTVLRR-RFPLVEVIIYPTLVQGEGAAASIVAAIERANA-----RGEDVLIVARGGG--S 204 (438)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHh-cCCCCeEEEecCcCcCccHHHHHHHHHHHhcC-----CCCCEEEEecCCC--C
Confidence 478999999998876 688865311 1242 22 223456566778888876532 2356555444555 2
Q ss_pred hHHHHh-hHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 344 FTDVAA-TFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 344 ~~~vaa-~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
.+|.++ .=+.+++|+-+. +.||++-+|-.... .|.|+- +.. ...||+.|++.++.
T Consensus 205 ~eDL~~Fn~e~v~~ai~~~-------~~Pvis~IGHE~D~----tl~D~v--Ad~------ra~TPtaaae~~~~ 260 (438)
T PRK00286 205 LEDLWAFNDEAVARAIAAS-------RIPVISAVGHETDF----TIADFV--ADL------RAPTPTAAAELAVP 260 (438)
T ss_pred HHHhhccCcHHHHHHHHcC-------CCCEEEeccCCCCc----cHHHHh--hhc------cCCChHHHHHHhCc
Confidence 344432 014455555443 69999999985432 223221 222 23799999987764
No 165
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=39.16 E-value=74 Score=32.19 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=50.7
Q ss_pred ceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 014512 263 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI 337 (423)
Q Consensus 263 ~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~ 337 (423)
.|+++++.++-+..+|- .+--+.|...+.|+.-.+- ..|.|+..+-|.+.+++. +-..++++|-|
T Consensus 86 ~N~lePgd~vLv~~~G~-wg~ra~D~~~r~ga~V~~v-~~~~G~~~~le~i~~~ls--------qh~p~~vfv~h 150 (385)
T KOG2862|consen 86 VNLLEPGDNVLVVSTGT-WGQRAADCARRYGAEVDVV-EADIGQAVPLEEITEKLS--------QHKPKAVFVTH 150 (385)
T ss_pred HhhcCCCCeEEEEEech-HHHHHHHHHHhhCceeeEE-ecCcccCccHHHHHHHHH--------hcCCceEEEEe
Confidence 35678899999999998 8899999999963322234 789999999998877765 44577888888
No 166
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=38.03 E-value=1.1e+02 Score=27.89 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC---CCCHHHH
Q 014512 328 PDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRG---GPNYQRG 384 (423)
Q Consensus 328 ~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~---G~~~~~a 384 (423)
.+.+.+++-+ |||..... ..|.++++.. ++|+++... |.....|
T Consensus 28 ~~~~~i~l~inSPGG~v~~~------~~I~~~i~~~-------~~pvv~~v~p~g~~AaSag 76 (172)
T cd07015 28 DNAEAIIIELDTPGGRADAA------GNIVQRIQQS-------KIPVIIYVYPPGASAASAG 76 (172)
T ss_pred CCCCeEEEEEECCCCCHHHH------HHHHHHHHhc-------CcCEEEEEecCCCeehhHH
Confidence 3466655444 99976533 6777777654 588888765 6554444
No 167
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=37.80 E-value=2.2e+02 Score=26.36 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.1
Q ss_pred eeecCCCCCHHHHHHHHHHHHHh
Q 014512 399 IEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 399 ~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+++|| .++.+++++++++++-
T Consensus 159 i~v~g--r~a~evv~k~l~ll~k 179 (181)
T COG1992 159 IRVLG--RNAVEVVEKALRLLLK 179 (181)
T ss_pred EEEeC--CCHHHHHHHHHHHHHh
Confidence 46777 8999999999988753
No 168
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=37.56 E-value=2.2e+02 Score=28.88 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=60.0
Q ss_pred CCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE
Q 014512 297 ELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR 375 (423)
Q Consensus 297 ~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr 375 (423)
...+-..+-+..-+|-+..++++--+ .|| +++|++. ++ ++....=.+.+..+|+-|++.+-+-.....--=.+
T Consensus 157 ~~R~s~w~~~~~gpd~I~~aF~~Are---adP--~AkL~~NDY~-ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~ 230 (345)
T COG3693 157 SLRRSAWYDGGTGPDYIKLAFHIARE---ADP--DAKLVINDYS-IEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFS 230 (345)
T ss_pred hhhhhhhhccCCccHHHHHHHHHHHh---hCC--CceEEeeccc-ccCChHHHHHHHHHHHHHHHCCCCccceeeeeeec
Confidence 33444555556667777778876543 255 4555555 75 55444333345666666766543211112222356
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCceeec
Q 014512 376 RGGPNYQRGLAKMRALAEEIGLPIEVY 402 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gip~~~~ 402 (423)
+++++.+..+..|.+..+. |+|++|.
T Consensus 231 ~~~~~~~~~~~a~~~~~k~-Gl~i~VT 256 (345)
T COG3693 231 GDGPSIEKMRAALLKFSKL-GLPIYVT 256 (345)
T ss_pred CCCCCHHHHHHHHHHHhhc-CCCceEE
Confidence 8889999999999877655 9999874
No 169
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=37.35 E-value=1.8e+02 Score=27.21 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
++.+.+..++.++-+++ ++|++++++.. .+. | .++++++++.+ .+.|.++..+++
T Consensus 165 ~~~~~~~~~~~~~~~l~---~~~~~~~i~~~-------~d~-A---~g~~~al~~~g-----~~~p~v~g~d~~ 219 (272)
T cd06300 165 GDWDQAVAQKAVADFLA---SNPDVDGIWTQ-------GGD-A---VGAVQAFEQAG-----RDIPPVTGEDEN 219 (272)
T ss_pred CCCCHHHHHHHHHHHHH---hCCCcCEEEec-------CCC-c---HHHHHHHHHcC-----CCCcEEEeeCCc
Confidence 34455555555555543 36777766632 234 5 78999999875 457777766664
No 170
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=37.07 E-value=3.1e+02 Score=24.59 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=73.9
Q ss_pred HHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---cCCCcchHHHHhhHHHHHHH
Q 014512 281 ASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI---GGGIANFTDVAATFNGIIQA 357 (423)
Q Consensus 281 ~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~ggi~~~~~vaa~~~gii~a 357 (423)
+---+.+.|..+ |....|.- +--=|-.-.+--+++.+++ ..+.|+++..- =|+...++-|+ +++.+.
T Consensus 30 l~~ga~~~l~~~--gv~~~~i~-v~~VPGa~EiP~a~~~l~~----~~~~DavIalG~VIrG~T~H~e~V~---~~v~~g 99 (154)
T PRK00061 30 LLEGALDALKRH--GVSEENID-VVRVPGAFEIPLAAKKLAE----SGKYDAVIALGAVIRGETPHFDYVA---NEVAKG 99 (154)
T ss_pred HHHHHHHHHHHc--CCCccceE-EEECCCHHHHHHHHHHHHH----cCCCCEEEEEeeEEcCCCchHHHHH---HHHHHH
Confidence 444466778774 44444443 3334555566677777775 55688887764 37777766666 777777
Q ss_pred HHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 358 LKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 358 ~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+.+..- ...+||..- +...|.+++..-- |.... .-=.||++.++++++.
T Consensus 100 l~~v~l---~~~~PV~~GVLt~~~~eQa~~R~-------~~~~~-----nkG~eaa~aal~m~~l 149 (154)
T PRK00061 100 LADVSL---ETGVPVGFGVLTTDTIEQAIERA-------GTKAG-----NKGAEAALAALEMANL 149 (154)
T ss_pred HHHHHh---ccCCCEEEEecCCCCHHHHHHHh-------Ccccc-----ccHHHHHHHHHHHHHH
Confidence 776643 257998777 7888888775433 32111 3446899999988763
No 171
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=36.96 E-value=1.3e+02 Score=26.48 Aligned_cols=64 Identities=19% Similarity=0.076 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHH
Q 014512 308 PNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAK 387 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~ 387 (423)
.+++.+.+.++-+-+ +..+ .+.||.|||-... + ..|.+.++.. ++|+++...|.-...|--+
T Consensus 15 ~~~~~~~~~l~~~~~----~~~i-~l~inspGG~~~~---~---~~i~~~i~~~-------~~pvi~~v~g~a~s~g~~i 76 (160)
T cd07016 15 VTAKEFKDALDALGD----DSDI-TVRINSPGGDVFA---G---LAIYNALKRH-------KGKVTVKIDGLAASAASVI 76 (160)
T ss_pred cCHHHHHHHHHhccC----CCCE-EEEEECCCCCHHH---H---HHHHHHHHhc-------CCCEEEEEcchHHhHHHHH
Confidence 566777777664432 4222 3555669986432 2 6777777664 5889999888766555444
Q ss_pred HH
Q 014512 388 MR 389 (423)
Q Consensus 388 l~ 389 (423)
+-
T Consensus 77 a~ 78 (160)
T cd07016 77 AM 78 (160)
T ss_pred Hh
Confidence 43
No 172
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.96 E-value=1.2e+02 Score=26.28 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=22.6
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 376 RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
++|..-+.+.++.......+|+-+..-|.+.|++++++++.+
T Consensus 10 ~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e 51 (132)
T TIGR00640 10 MGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE 51 (132)
T ss_pred eCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH
Confidence 555544555555555555555555555555555555555543
No 173
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=36.89 E-value=88 Score=32.16 Aligned_cols=68 Identities=10% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHHHHHhhccCCC--CCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHH
Q 014512 281 ASVIYADTVGDLGYA--SELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQAL 358 (423)
Q Consensus 281 ~~~~~~D~l~~~g~g--g~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~ 358 (423)
.++++.|-|+..| | |++-.|+-.-+..++..|.+..+-|+. +.+++.| ||..|+.+- +.|+..+
T Consensus 23 ~~~lAI~eINa~G-GvlG~~le~v~~Dp~Sd~~~ya~~A~~Li~----~d~V~~i----fGc~TSasR-----KaVlPvv 88 (363)
T PF13433_consen 23 GALLAIEEINAAG-GVLGRQLEPVIYDPASDPSTYAEKAEKLIR----EDGVRAI----FGCYTSASR-----KAVLPVV 88 (363)
T ss_dssp HHHHHHHHHHCTT-TBTTB--EEEEE--TT-HHHHHHHHHHHHH----HS---EE----EE--SHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHhcC-CcCCeEEEEEEECCCCCHHHHHHHHHHHHH----hCCccEE----EecchhhhH-----HHHHHHH
Confidence 3678899999864 3 577888888899999999999888876 5666533 577776543 6777766
Q ss_pred HHhh
Q 014512 359 KEKE 362 (423)
Q Consensus 359 ~~~~ 362 (423)
++++
T Consensus 89 E~~~ 92 (363)
T PF13433_consen 89 ERHN 92 (363)
T ss_dssp HHCT
T ss_pred HhcC
Confidence 6654
No 174
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=36.11 E-value=3.1e+02 Score=26.54 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCc------chHHHHhhHHHHHHHHHHhhhhhhccceeEEE
Q 014512 303 EYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIA------NFTDVAATFNGIIQALKEKESKLKAARMHLYV 374 (423)
Q Consensus 303 D~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~------~~~~vaa~~~gii~a~~~~~~~~~~~~~pivv 374 (423)
.++|. +++.+.++++.+.+ .+.+++=+|. |.... +.. .. .-+++++++. .++||.+
T Consensus 104 si~g~-~~~~~~~~a~~~~~-----~G~d~ielN~~cP~~~~~~~~~~~~~-~~---~eiv~~vr~~------~~~pv~v 167 (289)
T cd02810 104 SVGGS-SKEDYVELARKIER-----AGAKALELNLSCPNVGGGRQLGQDPE-AV---ANLLKAVKAA------VDIPLLV 167 (289)
T ss_pred EeccC-CHHHHHHHHHHHHH-----hCCCEEEEEcCCCCCCCCcccccCHH-HH---HHHHHHHHHc------cCCCEEE
Confidence 34454 77888888887764 3688899997 33221 222 22 4566666654 3689999
Q ss_pred EeCCCC-HHHHHHHHHhhhhhcCCcee
Q 014512 375 RRGGPN-YQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 375 rl~G~~-~~~a~~~l~~~~~~~Gip~~ 400 (423)
++++.. .++..++.+. ..++|+...
T Consensus 168 Kl~~~~~~~~~~~~a~~-l~~~Gad~i 193 (289)
T cd02810 168 KLSPYFDLEDIVELAKA-AERAGADGL 193 (289)
T ss_pred EeCCCCCHHHHHHHHHH-HHHcCCCEE
Confidence 977643 3344444432 235676543
No 175
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=35.57 E-value=67 Score=31.68 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHHHHHHHchhCCCCCccCCCceEEec---------CCCHHHHHHhhcccCCCcEEEeeccccCcc
Q 014512 10 DSKRLLKEHFQRLSGRELPIKSAQVIE---------STNFDELAQKEPWLTSCKLVVKPDMLFGKR 66 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~vp~~~~~~~~---------~~~~~ea~~~a~~lg~~pvVvKaqv~~g~R 66 (423)
.-++++.++ |||+|. ..... ..+.++..+........++|+||..-.+|+
T Consensus 29 ~~~~l~~~~-----gi~vP~--~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~ 87 (285)
T PF14397_consen 29 LFKQLFRDY-----GIPVPE--AIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGK 87 (285)
T ss_pred HHHHHHHHh-----cCCCCc--eEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCcc
Confidence 456778888 999994 22110 012355555554442258999998656655
No 176
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=35.34 E-value=3.6e+02 Score=24.85 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=48.2
Q ss_pred EEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHH
Q 014512 332 KRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGI 411 (423)
Q Consensus 332 ~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~a 411 (423)
.+++.-|+|.-+.+.+| + +...++..+ ++..+++..... ..|.+-|+.+++..|+|++......++.+.
T Consensus 3 vi~lvGptGvGKTTt~a---K-LAa~~~~~~------~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~ 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA---K-LAARLKLKG------KKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESDPAEI 71 (196)
T ss_dssp EEEEEESTTSSHHHHHH---H-HHHHHHHTT--------EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSCHHHH
T ss_pred EEEEECCCCCchHhHHH---H-HHHHHhhcc------ccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchhhHHH
Confidence 34455588888877666 3 333333322 244444444332 456677777777999998876666678888
Q ss_pred HHHHHHHHH
Q 014512 412 CKQAIECIS 420 (423)
Q Consensus 412 v~~~v~~~~ 420 (423)
+..+++..+
T Consensus 72 ~~~~l~~~~ 80 (196)
T PF00448_consen 72 AREALEKFR 80 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 177
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=35.16 E-value=2.5e+02 Score=25.88 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=38.8
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
++.+..|..=+-|..++..+....|..++..|...++++.++.+.+
T Consensus 86 l~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~ 131 (201)
T cd02070 86 VIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE 131 (201)
T ss_pred EEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 5566888888899999999999999999888988888888877654
No 178
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.54 E-value=1.4e+02 Score=25.98 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=40.9
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
++.+.+|..=+-|..++..+....|..++..|...++++.++.+.+.
T Consensus 7 l~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~ 53 (137)
T PRK02261 7 VLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET 53 (137)
T ss_pred EEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 66678888888999999888889999999999999999999888763
No 179
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.72 E-value=1.2e+02 Score=30.79 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=52.7
Q ss_pred ceEEecCCCHHHHHHhhccc-CCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcceeEEEEEe
Q 014512 31 SAQVIESTNFDELAQKEPWL-TSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEP 109 (423)
Q Consensus 31 ~~~~~~~~~~~ea~~~a~~l-g~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~ 109 (423)
+++.+.+ .++|..++..| ...||=+|+-...||| |=.+..|.++...+...|-...+. -.++.+|+
T Consensus 116 ~G~tvFs--~~DA~~A~~~LL~~G~VRlKp~~a~gG~----GQ~vv~~~~~Ld~~L~~~~~~~l~-------~~GlVLE~ 182 (355)
T PF11379_consen 116 PGYTVFS--REDARRAARRLLRDGPVRLKPVHATGGR----GQQVVADADELDAALAALDDAELA-------RHGLVLEE 182 (355)
T ss_pred CCccccC--HHHHHHHHHHHhccCCeeeccCcccCCC----CceEecCHHHHHHHHHcCCHHHHH-------hCCEEEec
Confidence 3444555 58888887766 3359999998888888 445667888888777766544442 24577788
Q ss_pred ecCCCceEEEEEE
Q 014512 110 FIPHNEEFYLNIV 122 (423)
Q Consensus 110 ~~~~~~E~ylgi~ 122 (423)
-+..-.=+.||-.
T Consensus 183 ~L~~~~T~SVGqv 195 (355)
T PF11379_consen 183 DLEEVVTYSVGQV 195 (355)
T ss_pred ccCCCceeeEEEE
Confidence 7765444555533
No 180
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=33.00 E-value=2.8e+02 Score=27.37 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=42.8
Q ss_pred CCceeeccCCCCHHHHHHHHHHH------HhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhcccee
Q 014512 298 LGNYAEYSGAPNEGEVLQYARVV------IDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMH 371 (423)
Q Consensus 298 paN~lD~gG~a~~~~~~~a~~~l------l~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~p 371 (423)
|.-|+ +-+.+.++.+..+++-+ |+++.-++....++++|.||.-.-.+-| .+-+++.++.+... .+.-
T Consensus 107 P~qf~-vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~a--l~RF~~~~~~L~~~---ir~r 180 (275)
T PF03851_consen 107 PDQFT-VLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAA--LERFIENFKRLPES---IRKR 180 (275)
T ss_dssp --TT---TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHH--HHHHHHHHHT--HH---HHTT
T ss_pred CCcce-eCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHH--HHHHHHHHhhCCHh---hhhc
Confidence 77776 67889999999888776 4545555544578888888766533322 35566666554322 1222
Q ss_pred EEEE--eCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 372 LYVR--RGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 372 ivvr--l~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
+++= =-..+.++.+.+-+ +.|||+.
T Consensus 181 L~lENDd~~yt~~d~L~ic~----~~giP~V 207 (275)
T PF03851_consen 181 LTLENDDKTYTVEDVLPICE----KLGIPMV 207 (275)
T ss_dssp EEEE--SSS--HHHHHHHHH----HHT--EE
T ss_pred EEEecCCCccCHHHHHHHHH----HhCCCEE
Confidence 4442 12234555555555 8899985
No 181
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=31.52 E-value=4.7e+02 Score=25.03 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=22.6
Q ss_pred HHHHHHhhhhhc-CCceeecCCCCCHHHHHHHHH
Q 014512 384 GLAKMRALAEEI-GLPIEVYGPEATMTGICKQAI 416 (423)
Q Consensus 384 a~~~l~~~~~~~-Gip~~~~g~~~t~~~av~~~v 416 (423)
.++.++++.+.. .+|+.--|...|.++|.+...
T Consensus 178 ~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 178 DMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK 211 (231)
T ss_pred hHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH
Confidence 455666665565 388887777788887777663
No 182
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.12 E-value=1.6e+02 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=38.3
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
++...+|..=+-|..++....+++|..++..|.+.++++.++++.+.
T Consensus 5 vigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~ 51 (134)
T TIGR01501 5 VLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET 51 (134)
T ss_pred EEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 34457777778888888877779999999999999999999988763
No 183
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.02 E-value=4.2e+02 Score=27.00 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=57.8
Q ss_pred EEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceee--cCCCCCHH
Q 014512 332 KRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEV--YGPEATMT 409 (423)
Q Consensus 332 ~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~--~g~~~t~~ 409 (423)
.+++.-..|.-..|.++ + +..-+++. ++.|++-=|.|-=..|.+-|...++..|+++.. +| .+|.
T Consensus 141 Vil~vGVNG~GKTTTIa---K-LA~~l~~~-------g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G--~DpA 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIA---K-LAKYLKQQ-------GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEG--ADPA 207 (340)
T ss_pred EEEEEecCCCchHhHHH---H-HHHHHHHC-------CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCC--CCcH
Confidence 34444477877777766 3 33334433 567888888887778889999888899999976 44 8888
Q ss_pred HHHHHHHHHHHhc
Q 014512 410 GICKQAIECISAA 422 (423)
Q Consensus 410 ~av~~~v~~~~~~ 422 (423)
..+-.|++.|++.
T Consensus 208 aVafDAi~~Akar 220 (340)
T COG0552 208 AVAFDAIQAAKAR 220 (340)
T ss_pred HHHHHHHHHHHHc
Confidence 8999999999874
No 184
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=30.73 E-value=1.6e+02 Score=24.31 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=25.0
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 416 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v 416 (423)
++.+.+|..-+-+.+++..+....|..+...|...++++.++.+.
T Consensus 3 l~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~ 47 (119)
T cd02067 3 VIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK 47 (119)
T ss_pred EEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 334455555555666666555566666655555555555555443
No 185
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=30.12 E-value=4.3e+02 Score=26.01 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHhhhccC--CCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhcc-ceeEEEEeCCCCHH
Q 014512 306 GAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAA-RMHLYVRRGGPNYQ 382 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~--~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~-~~pivvrl~G~~~~ 382 (423)
++-+.+.-+++++-+++ ++ +++++++. .++.+| .|+++++++++ . ++| |+...+ ..
T Consensus 203 ~~~~~~~a~~~~~~~l~---~~~~~~~~ai~~-------~~d~~A---~gvl~al~~~G-----l~~vp-Vvg~D~--~~ 261 (330)
T PRK15395 203 AMWDTAQAKDKMDAWLS---GPNANKIEVVIA-------NNDAMA---MGAVEALKAHN-----KSSIP-VFGVDA--LP 261 (330)
T ss_pred CCcCHHHHHHHHHHHHh---hCcCCCeeEEEE-------CCchHH---HHHHHHHHhcC-----CCCCe-EEeeCC--CH
Confidence 44454544455555554 22 45666662 235566 89999999876 3 567 555555 35
Q ss_pred HHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 383 RGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 383 ~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
.++..+. .|.....+ .-++.+....+++++.
T Consensus 262 ~~~~~~~-----~g~~~ttv--~~~~~~~G~~a~~~l~ 292 (330)
T PRK15395 262 EALALVK-----SGAMAGTV--LNDANNQAKATFDLAK 292 (330)
T ss_pred HHHHHHH-----hCCceEEE--ecCHHHHHHHHHHHHH
Confidence 5555554 23222211 2466677766666654
No 186
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.71 E-value=2.3e+02 Score=26.49 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHH
Q 014512 309 NEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKM 388 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l 388 (423)
+.+...+.++-+|+ ++|++++++.. .+..| .++++++++.+. .....++...| ..++.+.+
T Consensus 168 ~~~~~~~~~~~~l~---~~~~~~ai~~~-------~d~~a---~g~~~al~~~g~----~~~~~ivg~d~--~~~~~~~i 228 (274)
T cd06311 168 NRDDAFSVMQDLLT---KFPKIDAVWAH-------DDDMA---VGVLAAIKQAGR----TDIKFVVGGAG--SKDMIKMI 228 (274)
T ss_pred cHHHHHHHHHHHHH---hCCCcCEEEEC-------CCcHH---HHHHHHHHHcCC----CCCceEEEeCC--CHHHHHHH
Confidence 44444444444443 36778877632 24556 899999998752 11223333344 35666777
Q ss_pred H
Q 014512 389 R 389 (423)
Q Consensus 389 ~ 389 (423)
+
T Consensus 229 ~ 229 (274)
T cd06311 229 M 229 (274)
T ss_pred H
Confidence 6
No 187
>PRK10949 protease 4; Provisional
Probab=29.55 E-value=1.2e+02 Score=33.61 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCC--cchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE
Q 014512 309 NEGEVLQYARVVIDCATADPDGRKRALVI--GGGI--ANFTDVAATFNGIIQALKEKESKLKAARMHLYVR 375 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi--~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr 375 (423)
+-..+.++++-..+ ||++++|++.+ |||. +.+++ |-+++++.+. .++||++.
T Consensus 96 ~l~div~~i~~Aa~----D~rIkgivL~i~s~gG~~~a~~~e-------I~~ai~~fk~----sGKpVvA~ 151 (618)
T PRK10949 96 SLFDIVNTIRQAKD----DRNITGIVLDLKNFAGADQPSMQY-------IGKALREFRD----SGKPVYAV 151 (618)
T ss_pred cHHHHHHHHHHHhc----CCCceEEEEEeCCCCCccHHHHHH-------HHHHHHHHHH----hCCeEEEE
Confidence 33456666666555 99999999998 5442 33333 4445555542 35898885
No 188
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=29.52 E-value=61 Score=37.32 Aligned_cols=84 Identities=17% Similarity=0.318 Sum_probs=55.6
Q ss_pred HHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeec-cccCcccccCeeEEeCCHHHHHHHHHHHhcc
Q 014512 13 RLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD-MLFGKRGKSGLVALNLDLAQAATFVKECLGK 91 (423)
Q Consensus 13 ~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaq-v~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (423)
++|.+. ||.-| .+.-.++ .+||.+.+++.| ||+.|.|. ++.| - ..-+..+.++.+...++-..
T Consensus 1039 ~~Ld~i-----~v~Qp--~Wkelt~--~~eA~~F~~~Vg-YP~lvRPSYVLSG-a----AMnv~~~~~dl~~~L~~A~~- 1102 (1435)
T KOG0370|consen 1039 RMLDSI-----GVDQP--AWKELTS--LEEAKKFAEKVG-YPVLVRPSYVLSG-A----AMNVVYSESDLKSYLEQASA- 1102 (1435)
T ss_pred HHHHHc-----CCCch--hhhhhcc--HHHHHHHHHhcC-CceEecccceecc-h----hhhhhhcHHHHHHHHHHHhh-
Confidence 567777 88888 7777766 699999999998 89999976 4442 1 11123466666655444321
Q ss_pred cchhccCCcceeEEEEEeecCCCceEEE
Q 014512 92 EMEMSECKGPITTFIIEPFIPHNEEFYL 119 (423)
Q Consensus 92 ~~~~~g~~~~v~~vlVe~~~~~~~E~yl 119 (423)
. .+. .-|.+.+++...+|+=+
T Consensus 1103 -v---s~d---hPVVisKfie~AkEidv 1123 (1435)
T KOG0370|consen 1103 -V---SPD---HPVVISKFIEGAKEIDV 1123 (1435)
T ss_pred -c---CCC---CCEEhHHhhcccceech
Confidence 1 112 33678888888888765
No 189
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=29.52 E-value=4.8e+02 Score=29.43 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=54.1
Q ss_pred ecc-CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 303 EYS-GAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 303 D~g-G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
+++ +..+++.+.+++. +.+.+.+.| .+-...-.+.+ ..+++++++.+. .+ +.+-+||.-.
T Consensus 614 ~~~~~~~s~e~~v~aa~--------~~~a~ivvl--cs~d~~~~e~~---~~l~~~Lk~~G~----~~--v~vl~GG~~~ 674 (714)
T PRK09426 614 DIGPLFQTPEEAARQAV--------ENDVHVVGV--SSLAAGHKTLV---PALIEALKKLGR----ED--IMVVVGGVIP 674 (714)
T ss_pred ecCCCCCCHHHHHHHHH--------HcCCCEEEE--eccchhhHHHH---HHHHHHHHhcCC----CC--cEEEEeCCCC
Confidence 455 3678887666654 234443333 33222222333 788888888741 12 4344677522
Q ss_pred HHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 382 QRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 382 ~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
.+..+.++ ++|+.-|++ .-++..+.+......+..
T Consensus 675 ~~~~~~l~----~aGvD~~i~-~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 675 PQDYDFLY----EAGVAAIFG-PGTVIADAAIDLLELLSA 709 (714)
T ss_pred hhhHHHHH----hCCCCEEEC-CCCCHHHHHHHHHHHHHH
Confidence 22235566 789976644 567888888887776643
No 190
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.45 E-value=1.8e+02 Score=25.28 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=35.1
Q ss_pred EEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 373 YVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 373 vvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
+...+|..=+-|.+++....+.+|..++-.|...++++.++++.+.
T Consensus 4 igtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~ 49 (128)
T cd02072 4 LGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET 49 (128)
T ss_pred EEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 3446666667777777777778898888888888888888888763
No 191
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=29.44 E-value=1.7e+02 Score=30.16 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=29.1
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---cCCCcchHHHHhhHHHHHHHHHHh
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVI---GGGIANFTDVAATFNGIIQALKEK 361 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~ggi~~~~~vaa~~~gii~a~~~~ 361 (423)
+-.++.+.+.+++. +++|+++||. |+|.+=+.+-. +.|++..+++
T Consensus 148 ~f~~d~~~l~~~i~---------~ktk~i~ln~P~NPTGav~~~~~l---~~i~~~a~~~ 195 (393)
T COG0436 148 GFKPDLEDLEAAIT---------PKTKAIILNSPNNPTGAVYSKEEL---KAIVELAREH 195 (393)
T ss_pred CCcCCHHHHHhhcC---------ccceEEEEeCCCCCcCcCCCHHHH---HHHHHHHHHc
Confidence 55666666655433 4789999996 55544444444 7888877765
No 192
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=29.13 E-value=2e+02 Score=31.59 Aligned_cols=55 Identities=16% Similarity=0.081 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCC--CcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC
Q 014512 308 PNEGEVLQYARVVIDCATADPDGRKRALVI--GGG--IANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRG 377 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~gg--i~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~ 377 (423)
.+...+.++++...+ ||++++|++.+ ++| .+.. +-|-+++++.+. .+|||++...
T Consensus 76 ~~l~~i~~~i~~A~~----D~~IkgIvL~i~~~~g~~~~~~-------~ei~~ai~~fk~----sgKpVvA~~~ 134 (584)
T TIGR00705 76 ISLFDIVNAIRQAAD----DRRIEGLVFDLSNFSGWDSPHL-------VEIGSALSEFKD----SGKPVYAYGT 134 (584)
T ss_pred cCHHHHHHHHHHHhc----CCCceEEEEEccCCCCCCHHHH-------HHHHHHHHHHHh----cCCeEEEEEc
Confidence 455666677776666 99999999987 333 2222 445556666542 3689988643
No 193
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.77 E-value=3.6e+02 Score=24.81 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=56.4
Q ss_pred cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHH
Q 014512 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~ 359 (423)
|+-| ..+.+...|+ .-+|+|-+.+++.+.+++. +.+.+.|.+.. ..+....-+ +.+++.++
T Consensus 98 G~~~-v~~~l~~~G~-----~vi~lG~~~p~~~l~~~~~--------~~~~d~v~lS~--~~~~~~~~~---~~~i~~lr 158 (201)
T cd02070 98 GKNL-VATMLEANGF-----EVIDLGRDVPPEEFVEAVK--------EHKPDILGLSA--LMTTTMGGM---KEVIEALK 158 (201)
T ss_pred HHHH-HHHHHHHCCC-----EEEECCCCCCHHHHHHHHH--------HcCCCEEEEec--cccccHHHH---HHHHHHHH
Confidence 4544 4577777533 3388999999998877665 23344444333 122222223 67778887
Q ss_pred HhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 014512 360 EKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415 (423)
Q Consensus 360 ~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~ 415 (423)
+.. .+..+-+.+||.-..+ ..-. ..|...| ..+..+|++.+
T Consensus 159 ~~~-----~~~~~~i~vGG~~~~~--~~~~----~~GaD~~----~~da~~av~~~ 199 (201)
T cd02070 159 EAG-----LRDKVKVMVGGAPVNQ--EFAD----EIGADGY----AEDAAEAVAIA 199 (201)
T ss_pred HCC-----CCcCCeEEEECCcCCH--HHHH----HcCCcEE----ECCHHHHHHHH
Confidence 763 2123445566654432 1222 6677665 25666666543
No 194
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=28.73 E-value=3.7e+02 Score=24.74 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=40.0
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
++.+..|..-+-|..++..+....|..+...|...++++.++.+.+
T Consensus 88 v~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~ 133 (197)
T TIGR02370 88 VCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK 133 (197)
T ss_pred EEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH
Confidence 6666899888999999999999999999999999998888877654
No 195
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=28.49 E-value=5.1e+02 Score=28.66 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=23.7
Q ss_pred ccCCceEecCC--CcEEEEEcCCcHHHHHHHHhhcc
Q 014512 259 ASLKFTVLNPK--GRIWTMVAGGGASVIYADTVGDL 292 (423)
Q Consensus 259 ~~~~~~~v~l~--g~I~~i~nG~G~~~~~~D~l~~~ 292 (423)
+..+++.+..+ ++||||+.|..-. -.-|+|...
T Consensus 235 ~~~~~n~v~~~~~~~lGII~~G~ay~-yVkeAl~~l 269 (640)
T COG4231 235 NANPLNRVEGSDDAKLGIIASGIAYN-YVKEALEDL 269 (640)
T ss_pred hhCcccccccCCCCceEEEecCccHH-HHHHHHHHc
Confidence 44467777766 9999999887433 356888874
No 196
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=28.33 E-value=73 Score=33.89 Aligned_cols=33 Identities=36% Similarity=0.554 Sum_probs=29.8
Q ss_pred cceeEEEEeCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 368 ARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 368 ~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
.++|+++.=||-.+..|++.|+.+.+..|||+.
T Consensus 229 ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ 261 (617)
T COG3962 229 AKKPLIVAGGGVLYSGAREALRAFAETHGIPVV 261 (617)
T ss_pred cCCCEEEecCceeechHHHHHHHHHHhcCCceE
Confidence 368999999999999999999988889999986
No 197
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=27.08 E-value=4.2e+02 Score=27.64 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=15.5
Q ss_pred hhcCCceeecCCCCCHHHHHHH
Q 014512 393 EEIGLPIEVYGPEATMTGICKQ 414 (423)
Q Consensus 393 ~~~Gip~~~~g~~~t~~~av~~ 414 (423)
.++|||+--|...++.+++.+.
T Consensus 117 ~~~gIpt~~~~~~~~~~ea~~~ 138 (426)
T PRK13789 117 KEAKIPTASYKTFTEYSSSLSY 138 (426)
T ss_pred HHcCCCCCCeEeeCCHHHHHHH
Confidence 3789998656566788877543
No 198
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.81 E-value=5e+02 Score=23.80 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=13.2
Q ss_pred cCCCcEEEEEcCCcHHH
Q 014512 267 NPKGRIWTMVAGGGASV 283 (423)
Q Consensus 267 ~l~g~I~~i~nG~G~~~ 283 (423)
..+++|-+.++|+...+
T Consensus 42 ~~~~rI~i~G~G~S~~~ 58 (192)
T PRK00414 42 KAGGKVLSCGNGGSHCD 58 (192)
T ss_pred HCCCEEEEEeCcHHHHH
Confidence 45799999999987554
No 199
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.68 E-value=5.2e+02 Score=25.40 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=38.9
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCC--CCcEEEEEe--cCC-----Cc-chHHHHhhHHHHHHHHHHhhhhhhcccee
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADP--DGRKRALVI--GGG-----IA-NFTDVAATFNGIIQALKEKESKLKAARMH 371 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~--~~~~ilv~~--~gg-----i~-~~~~vaa~~~gii~a~~~~~~~~~~~~~p 371 (423)
+.+.|. ++.+.+.++.+.+ .. ..+++=+|+ |.. +. +++ .. .-|++++++. .++|
T Consensus 96 vsi~g~--~~~~~~~~~~~~~----~~~~~ad~ielN~sCPn~~~~~~~~~~~~-~~---~~i~~~v~~~------~~iP 159 (294)
T cd04741 96 ISVTGS--AEDIAAMYKKIAA----HQKQFPLAMELNLSCPNVPGKPPPAYDFD-AT---LEYLTAVKAA------YSIP 159 (294)
T ss_pred EECCCC--HHHHHHHHHHHHh----hccccccEEEEECCCCCCCCcccccCCHH-HH---HHHHHHHHHh------cCCC
Confidence 445666 7788888877653 22 678999998 331 11 222 33 4577777765 3699
Q ss_pred EEEEeCC
Q 014512 372 LYVRRGG 378 (423)
Q Consensus 372 ivvrl~G 378 (423)
|++.+.-
T Consensus 160 v~vKl~p 166 (294)
T cd04741 160 VGVKTPP 166 (294)
T ss_pred EEEEeCC
Confidence 9999654
No 200
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.63 E-value=2.1e+02 Score=24.09 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=27.9
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
|+.+.+|..-+-+..++..+....|..+...|...++++.++.+.+
T Consensus 3 v~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~ 48 (122)
T cd02071 3 LVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ 48 (122)
T ss_pred EEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 3444555555566666666666667766666666666666665544
No 201
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=26.50 E-value=88 Score=24.90 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecC
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIES 37 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~ 37 (423)
|+|.|++++|++| ||.--..+...+++
T Consensus 21 ls~eE~~~vLk~l-----~i~~~qLPkI~~~D 47 (80)
T COG2012 21 LSEEEAKEVLKEL-----GIEPEQLPKIKASD 47 (80)
T ss_pred cCHHHHHHHHHHh-----CCCHHHCCcccccC
Confidence 7899999999999 88643333333333
No 202
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.35 E-value=5.4e+02 Score=23.67 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=53.2
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
..+.+.+...+.+.-+++ .+| +++++. ..+..+ .++++++++.+. .+.+.++..++ ..+.
T Consensus 162 ~~~~~~~~a~~~~~~~l~---~~~-~~~i~~-------~~~~~~---~g~~~al~~~g~----~~~~~v~g~d~--~~~~ 221 (257)
T PF13407_consen 162 YTDWDPEDARQAIENLLQ---ANP-VDAIIA-------CNDGMA---LGAAQALQQAGR----AGKVIVVGFDG--SPEA 221 (257)
T ss_dssp ECTTSHHHHHHHHHHHHH---HTT-EEEEEE-------SSHHHH---HHHHHHHHHTTC----TTTSEEEEEEC--HHHH
T ss_pred ccCCCHHHHHHHHHHhhh---cCC-ceEEEe-------CCChHH---HHHHHHHHHcCC----cccceeecCCC--CHHH
Confidence 346667766666665554 465 665542 124455 899999999763 23455666666 4566
Q ss_pred HHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 385 LAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 385 ~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
.+.++ +-.+...++ .++......+++++-+
T Consensus 222 ~~~i~----~g~~~a~v~---~~~~~~g~~av~~l~~ 251 (257)
T PF13407_consen 222 LEAIK----DGNITATVG---QDPYQQGYKAVEALFD 251 (257)
T ss_dssp HHHHH----TTSSSEEEE---E-HHHHHHHHHHHHHH
T ss_pred HHHHH----CCCCeEEEe---CCHHHHHHHHHHHHHH
Confidence 67776 444543332 5777777777766543
No 203
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=25.28 E-value=1.2e+02 Score=32.55 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 268 l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
..|..+.+++-||++.=-.+++..- ---|.-=+-+||+..+-.. .++-++. -+.+|.+|-|++.. .||--.
T Consensus 158 R~Gsv~~vS~sGGmsnE~nn~isrt--t~g~~egiaiggd~~pgST--l~dhi~r-~q~~~~vk~Iv~Lgevgg~~e--- 229 (600)
T KOG1254|consen 158 RPGSVIYVSRSGGMSNELNNIISRT--TDGPYEGIAIGGDRYPGST--LIDHIPR-EQHDPLVKFIVVLGEVGGDEE--- 229 (600)
T ss_pred CCccEEEEecCCCcchhhhhhhhhe--eccceeeeeccCCCccCch--Hhhhhhh-hhccChhheEEeehhhcccce---
Confidence 3589999999999988766666542 1224444668888887654 2333432 24588898777776 566432
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-.++++.|+-+ .++|+|+|..|+
T Consensus 230 -----y~~~e~~k~g~-----~tkPlVaw~~gt 252 (600)
T KOG1254|consen 230 -----YTFLEANKEGK-----ITKPLVAWCIGT 252 (600)
T ss_pred -----eehhhhhhcCC-----ccCCEEEEecCc
Confidence 33556666653 689999999987
No 204
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.90 E-value=4.9e+02 Score=24.43 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=41.3
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
++.+..|..=+-|..++..+....|..++..|...++++.++.+.+.
T Consensus 92 vl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~ 138 (213)
T cd02069 92 VLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH 138 (213)
T ss_pred EEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc
Confidence 66679998889999999999999999999999999999988887654
No 205
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=24.85 E-value=1.6e+02 Score=30.34 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=38.3
Q ss_pred Cc-EEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEE
Q 014512 53 CK-LVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFY 118 (423)
Q Consensus 53 ~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~y 118 (423)
.| |+|||+.-+=|- ||..+.|.+|+...-++-..+-...++ +..|+.|+|||-+. ..|.+
T Consensus 257 ~PfViVKADaGTYGM----GImtv~~~~ev~~LNrK~RnKM~~~Ke-g~~V~~VIiQEGV~-T~E~~ 317 (403)
T TIGR02049 257 QPYVIVKADAGTYGM----GIMTATSGEEVLGLNRKERNKMAKVKE-GLEVSEVIIQEGVY-TFEMF 317 (403)
T ss_pred CCeEEEEcCCCCCCc----eEEEecCHHHHHHhhhhhhhhcccccC-CCccceEEEecCcc-eeeee
Confidence 45 577888643333 888899999988655444322111111 24689999999887 55655
No 206
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=24.80 E-value=3.5e+02 Score=26.59 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=22.7
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 376 RGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
..|...++|+++|+++.++.|+|+.
T Consensus 61 FqG~G~eeGL~~L~~vk~~~Glpvv 85 (264)
T PRK05198 61 FRGPGLEEGLKILQEVKETFGVPVL 85 (264)
T ss_pred CCCCChHHHHHHHHHHHHHHCCceE
Confidence 6777789999999999999999986
No 207
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=24.74 E-value=3.5e+02 Score=24.19 Aligned_cols=75 Identities=8% Similarity=0.002 Sum_probs=44.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcE--EEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRK--RALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRG 377 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~--ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~ 377 (423)
+-+-++|..+.+........+..+ ..++..+. +.||.|||-.. .+ ..|.+.++.+ +.|+++...
T Consensus 10 r~i~i~g~I~~~~~~~i~~~l~~~-~~~~~~~~i~l~inSpGG~v~---~~---~~i~~~l~~~-------~~~v~t~~~ 75 (171)
T cd07017 10 RIIFLGGPIDDEVANLIIAQLLYL-ESEDPKKPIYLYINSPGGSVT---AG---LAIYDTMQYI-------KPPVSTICL 75 (171)
T ss_pred cEEEEcCEEcHHHHHHHHHHHHHH-HccCCCCceEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEEE
Confidence 346677878777776666665432 22333344 44445998432 22 6788888765 367777766
Q ss_pred CCCHHHHHHHH
Q 014512 378 GPNYQRGLAKM 388 (423)
Q Consensus 378 G~~~~~a~~~l 388 (423)
|.-+..|-=++
T Consensus 76 g~aaS~~~~i~ 86 (171)
T cd07017 76 GLAASMGALLL 86 (171)
T ss_pred eEehhHHHHHH
Confidence 65555554444
No 208
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=24.67 E-value=3.7e+02 Score=22.94 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=41.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
-||+=+..+.+.+.+.++++-++. ++++-.|+|+ +.+| +-|-..+.+++ ...|.++=+.+
T Consensus 34 ~nf~~v~~~t~~eei~~~~~~~l~----~~digIIlIt--------e~~a---~~i~~~I~~~~-----~~~PaIieIP~ 93 (115)
T TIGR01101 34 PNFLVVDKNTTVSEIEDCFNRFLK----RDDIAIILIN--------QHIA---EMIRHAVDAHT-----RSIPAVLEIPS 93 (115)
T ss_pred cceeeecCCCCHHHHHHHHHHHhh----cCCeEEEEEc--------HHHH---HHhHHHHHhcC-----CcCCEEEEECC
Confidence 689988888999999999999776 7777545442 3455 44444444443 35898888777
No 209
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.33 E-value=7.1e+02 Score=24.70 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=57.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec--CCC---------------------------------cc
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG--GGI---------------------------------AN 343 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~--ggi---------------------------------~~ 343 (423)
..-..+..+.+.+.+.+.++-+-+ |+++++|+|-.| ..+ .+
T Consensus 64 ~~~~~l~~~~~~~~l~~~I~~lN~----d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~P 139 (284)
T PRK14179 64 SEVVRLPETISQEELLDLIERYNQ----DPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIP 139 (284)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcC
Confidence 445677788888877776665554 888888888763 322 33
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCC-CCHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPE-ATMTGICKQ 414 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~-~t~~~av~~ 414 (423)
| |..|+++-++.++-.. ..+.+++- ++|..-.---.+|. +.|..+.++... .++.+.++.
T Consensus 140 c-----Tp~avi~lL~~~~i~l--~Gk~v~vIG~S~ivG~Pla~lL~----~~gatVtv~~s~t~~l~~~~~~ 201 (284)
T PRK14179 140 C-----TPAGIMEMFREYNVEL--EGKHAVVIGRSNIVGKPMAQLLL----DKNATVTLTHSRTRNLAEVARK 201 (284)
T ss_pred C-----CHHHHHHHHHHhCCCC--CCCEEEEECCCCcCcHHHHHHHH----HCCCEEEEECCCCCCHHHHHhh
Confidence 3 3388888888764222 23444443 54543333333444 568777776322 334444443
No 210
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.04 E-value=6.7e+02 Score=24.33 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=9.8
Q ss_pred CceeeccCCCCHH
Q 014512 299 GNYAEYSGAPNEG 311 (423)
Q Consensus 299 aN~lD~gG~a~~~ 311 (423)
|.++|+|+..+++
T Consensus 39 AdiIDVg~~~~~~ 51 (261)
T PRK07535 39 ADYLDVNAGTAVE 51 (261)
T ss_pred CCEEEECCCCCch
Confidence 7788888887644
No 211
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=23.81 E-value=7.3e+02 Score=25.00 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCC-----CcchHHHHhhHHHHHHHHHHhhhhh-hccceeEEEEeCCCC
Q 014512 309 NEGEVLQYARVVIDCATADPDGRKRALVI--GGG-----IANFTDVAATFNGIIQALKEKESKL-KAARMHLYVRRGGPN 380 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~gg-----i~~~~~vaa~~~gii~a~~~~~~~~-~~~~~pivvrl~G~~ 380 (423)
..+.|.+.++.+- +..+++-+|+ |.. ..+++.+ .-+++++++..... +..++||++.+.-.-
T Consensus 152 ~~~dy~~~~~~~~------~~ad~iElNlScPn~~~~~~~~~~~~~----~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~ 221 (335)
T TIGR01036 152 AKEDYAACLRKLG------PLADYLVVNVSSPNTPGLRDLQYKAEL----RDLLTAVKQEQDGLRRVHRVPVLVKIAPDL 221 (335)
T ss_pred CHHHHHHHHHHHh------hhCCEEEEEccCCCCCCcccccCHHHH----HHHHHHHHHHHHhhhhccCCceEEEeCCCC
Confidence 5677877777653 2478999997 421 1222222 34555555432100 012499999998754
Q ss_pred HHHHHHHHHhhhhhcCC
Q 014512 381 YQRGLAKMRALAEEIGL 397 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~Gi 397 (423)
..+...-+.+...++|+
T Consensus 222 ~~~~i~~ia~~~~~~Ga 238 (335)
T TIGR01036 222 TESDLEDIADSLVELGI 238 (335)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33233333333335564
No 212
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=23.71 E-value=1.2e+02 Score=30.34 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=35.8
Q ss_pred CCccCCCceEEecCCCHHHHHHh--hcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcc
Q 014512 24 GRELPIKSAQVIESTNFDELAQK--EPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP 101 (423)
Q Consensus 24 GI~vp~~~~~~~~~~~~~ea~~~--a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~ 101 (423)
.|.+| +..+..+. .++..+. ...+. +|+|.||++.. |..++.-..+.-+.+...+ ++ . +
T Consensus 112 ~i~~P--~~v~i~~~-~~~~~~~l~~agL~-fPlI~KPlvA~-Gsa~SH~Maivf~~~gL~~---------L~--~---P 172 (307)
T PF05770_consen 112 RIRVP--KFVVINSD-AESLPELLKEAGLK-FPLICKPLVAC-GSADSHKMAIVFNEEGLKD---------LK--P---P 172 (307)
T ss_dssp TEE-S---EEEESSS-HCCHHHHHHCTTS--SSEEEEESB-S-STSCCCEEEEE-SGGGGTT-------------S---S
T ss_pred cccCC--ceEEEcCC-HHHHHHHHHHCCCc-ccEEeeehhhc-CCccceEEEEEECHHHHhh---------cC--C---C
Confidence 66777 66666532 3333332 23554 89999999976 4667777666655544321 21 1 1
Q ss_pred eeEEEEEeecCCCc
Q 014512 102 ITTFIIEPFIPHNE 115 (423)
Q Consensus 102 v~~vlVe~~~~~~~ 115 (423)
+++||+++|+-
T Consensus 173 ---~VlQeFVNHgg 183 (307)
T PF05770_consen 173 ---CVLQEFVNHGG 183 (307)
T ss_dssp ---EEEEE----TT
T ss_pred ---EEEEEeecCCC
Confidence 58999999874
No 213
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.60 E-value=3.9e+02 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.5
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 376 RGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
..|.-.++|+++|+++.++.|+|+.
T Consensus 67 FqG~G~eeGL~iL~~vk~~~Glpvv 91 (281)
T PRK12457 67 YRGVGLDEGLRIFEEVKARFGVPVI 91 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCceE
Confidence 5677789999999999999999986
No 214
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.57 E-value=1.1e+02 Score=20.35 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhh
Q 014512 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKE 47 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a 47 (423)
..++.|-++.|.+| ||++| +.. .+ -++..+.+
T Consensus 3 tWs~~~L~~wL~~~-----gi~~~--~~~--~~--rd~Ll~~~ 34 (38)
T PF10281_consen 3 TWSDSDLKSWLKSH-----GIPVP--KSA--KT--RDELLKLA 34 (38)
T ss_pred CCCHHHHHHHHHHc-----CCCCC--CCC--CC--HHHHHHHH
Confidence 35678899999999 99998 333 12 46766554
No 215
>PRK10867 signal recognition particle protein; Provisional
Probab=23.33 E-value=6.9e+02 Score=26.34 Aligned_cols=79 Identities=24% Similarity=0.285 Sum_probs=43.6
Q ss_pred EEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHH
Q 014512 333 RALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGIC 412 (423)
Q Consensus 333 ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av 412 (423)
+++.-+.|--..|. + -.++..+++.. ..++.++..- +.--.+.+-|+.+++..|+|+|..+...+|.+.+
T Consensus 103 I~~vG~~GsGKTTt-a---akLA~~l~~~~-----G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~ 172 (433)
T PRK10867 103 IMMVGLQGAGKTTT-A---GKLAKYLKKKK-----KKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIA 172 (433)
T ss_pred EEEECCCCCcHHHH-H---HHHHHHHHHhc-----CCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHH
Confidence 33333666666443 3 34555555441 1233333322 2223344555555558899988665556888888
Q ss_pred HHHHHHHHh
Q 014512 413 KQAIECISA 421 (423)
Q Consensus 413 ~~~v~~~~~ 421 (423)
..+++.++.
T Consensus 173 ~~a~~~a~~ 181 (433)
T PRK10867 173 KAALEEAKE 181 (433)
T ss_pred HHHHHHHHh
Confidence 878776653
No 216
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=23.11 E-value=3.1e+02 Score=29.01 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=36.9
Q ss_pred CcEEEeeccccCcccccCeeEEe--CCHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEE
Q 014512 53 CKLVVKPDMLFGKRGKSGLVALN--LDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYL 119 (423)
Q Consensus 53 ~pvVvKaqv~~g~Rgk~GgV~l~--~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~yl 119 (423)
-.+|+||--.-|++ ||.++ .++++=+++.++.+. +.+++|+++...+|-+.
T Consensus 339 ~~lVLKP~D~Ygg~----GV~~G~e~~~eeW~~~l~~a~~------------~~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 339 DRLVLKPNDEYGGK----GVYIGWETSPEEWEAALEEAAR------------EPYILQEYVRPPREPMP 391 (445)
T ss_pred hcEEeccccccCCC----CeEECCcCCHHHHHHHHHHHhc------------CCcEEEEEecCCccccc
Confidence 36899998887777 89998 377765555555442 24789999887766666
No 217
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=22.71 E-value=4.3e+02 Score=25.92 Aligned_cols=25 Identities=36% Similarity=0.684 Sum_probs=22.5
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 376 RGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
..|.-.++|+++|+++.++.|+|+.
T Consensus 53 FqG~G~eeGL~iL~~vk~~~glpvv 77 (258)
T TIGR01362 53 FRGPGLEEGLKILQKVKEEFGVPIL 77 (258)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCceE
Confidence 5677779999999999999999986
No 218
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=22.68 E-value=1.2e+02 Score=24.19 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecC
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIES 37 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~ 37 (423)
|++.|.++||++| +|.....+....++
T Consensus 18 Ls~eE~~~lL~~y-----~i~~~qLP~I~~~D 44 (79)
T PRK09570 18 LSEEEAKKLLKEY-----GIKPEQLPKIKASD 44 (79)
T ss_pred CCHHHHHHHHHHc-----CCCHHHCCceeccC
Confidence 7889999999999 87654444444444
No 219
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=22.49 E-value=8e+02 Score=24.64 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCcEEEEEecCC--CcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCC----HHH
Q 014512 310 EGEVLQYARVVIDCATADPDGRKRALVIGGG--IANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPN----YQR 383 (423)
Q Consensus 310 ~~~~~~a~~~ll~~~~~~~~~~~ilv~~~gg--i~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~----~~~ 383 (423)
.+.+.+.++.+.+ +++++-|++ .|| +...+... .-+++.+++... -..+.+-+|..+++ .++
T Consensus 144 ~~~~~~~i~~i~~----~~~i~eV~l--sGGDPLl~~d~~L---~~ll~~L~~i~~---~~~IRi~tr~~~~~P~rit~e 211 (331)
T TIGR00238 144 KKKWQKALDYIAE----HPEIIEILI--SGGDPLMAKDHEL---EWLLKRLEEIPH---LVRLRIGTRLPVVIPQRITDE 211 (331)
T ss_pred HHHHHHHHHHHHh----CCCcCEEEE--ECCccccCCHHHH---HHHHHHHHhcCC---ccEEEeecCCCccCchhcCHH
Confidence 4556666665544 566654332 232 12222222 345555554321 01233444544442 233
Q ss_pred HHHHHHhhhhhcCCceeecCCCCCH---HHHHHHHHHHHHh
Q 014512 384 GLAKMRALAEEIGLPIEVYGPEATM---TGICKQAIECISA 421 (423)
Q Consensus 384 a~~~l~~~~~~~Gip~~~~g~~~t~---~~av~~~v~~~~~ 421 (423)
-.+.|+ ++|+++.......++ ++.+..+++.+++
T Consensus 212 l~~~L~----~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~ 248 (331)
T TIGR00238 212 LCELLA----SFELQLMLVTHINHCNEITEEFAEAMKKLRT 248 (331)
T ss_pred HHHHHH----hcCCcEEEEccCCChHhCCHHHHHHHHHHHH
Confidence 344555 567766555444454 2445555555543
No 220
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=22.42 E-value=3.4e+02 Score=25.49 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCC
Q 014512 352 NGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGP 404 (423)
Q Consensus 352 ~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~ 404 (423)
++|++++++.. .+.-+++.++-.....+++... +.|||++.+..
T Consensus 14 ~al~~~~~~~~-----l~~~i~~visn~~~~~~~~~A~----~~gIp~~~~~~ 57 (207)
T PLN02331 14 RAIHDACLDGR-----VNGDVVVVVTNKPGCGGAEYAR----ENGIPVLVYPK 57 (207)
T ss_pred HHHHHHHHcCC-----CCeEEEEEEEeCCCChHHHHHH----HhCCCEEEecc
Confidence 77888877653 1222333333333344455445 78999987654
No 221
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=22.42 E-value=2.8e+02 Score=24.93 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=48.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcE-EEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRK-RALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~-ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
+.+-+.|..+.+.+......++.+-..++.-.. +.||.|||-.. .+ -+|.++++.. +.|+.+...|
T Consensus 17 r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~---~g---~~i~~~i~~~-------~~~v~t~~~G 83 (182)
T PF00574_consen 17 RIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVD---AG---LAIYDAIRSS-------KAPVTTVVLG 83 (182)
T ss_dssp TEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHH---HH---HHHHHHHHHS-------SSEEEEEEEE
T ss_pred eEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccH---HH---HHHHHHHHhc-------CCCeEEEEeC
Confidence 456678889988888777766543223443333 55566998542 23 6788888775 4788777666
Q ss_pred CCHHHHHHHHH
Q 014512 379 PNYQRGLAKMR 389 (423)
Q Consensus 379 ~~~~~a~~~l~ 389 (423)
..+..|-=++.
T Consensus 84 ~aaSaa~~i~~ 94 (182)
T PF00574_consen 84 LAASAATLIFL 94 (182)
T ss_dssp EEETHHHHHHH
T ss_pred ccccceehhhh
Confidence 55555544443
No 222
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=22.34 E-value=5.9e+02 Score=26.41 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=41.6
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCC----------cchHHHHhhHHHHHHHHHHhhhhhhcccee
Q 014512 304 YSGAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGI----------ANFTDVAATFNGIIQALKEKESKLKAARMH 371 (423)
Q Consensus 304 ~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi----------~~~~~vaa~~~gii~a~~~~~~~~~~~~~p 371 (423)
+.|.-+.+.+.+.++.+- +.+.+++=+|+ |.+. .++ +.. +-|++++++. .++|
T Consensus 120 i~~~~s~~~~~~~a~~~e-----~~GaD~iELNiSCPn~~~~r~~g~~~gq~~-e~~---~~i~~~Vk~~------~~iP 184 (385)
T PLN02495 120 IMEEYNKDAWEEIIERVE-----ETGVDALEINFSCPHGMPERKMGAAVGQDC-DLL---EEVCGWINAK------ATVP 184 (385)
T ss_pred ccCCCCHHHHHHHHHHHH-----hcCCCEEEEECCCCCCCCcCccchhhccCH-HHH---HHHHHHHHHh------hcCc
Confidence 445567888988888764 45689999998 4431 122 233 5566777665 3699
Q ss_pred EEEEeCCC
Q 014512 372 LYVRRGGP 379 (423)
Q Consensus 372 ivvrl~G~ 379 (423)
|++.|.-+
T Consensus 185 v~vKLsPn 192 (385)
T PLN02495 185 VWAKMTPN 192 (385)
T ss_pred eEEEeCCC
Confidence 99999953
No 223
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=22.26 E-value=8e+02 Score=25.77 Aligned_cols=37 Identities=19% Similarity=0.508 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 384 GLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 384 a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+.+.|..++...|+|++..+...+|.+.+..+++.++
T Consensus 143 a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~ 179 (428)
T TIGR00959 143 AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK 179 (428)
T ss_pred HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH
Confidence 4555555556789998877666778887777777654
No 224
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=21.93 E-value=6.2e+02 Score=23.16 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=48.6
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhcccee--E-EEEeCCCCH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMH--L-YVRRGGPNY 381 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~p--i-vvrl~G~~~ 381 (423)
.++.+.+..+++++-+++ ++|++++++.. ++.+| .++++++++.+ .++| + ++..++...
T Consensus 156 ~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~-------~d~~a---~~~~~~l~~~g-----~~~p~di~vig~d~~~~ 217 (268)
T cd01575 156 PEPSSFALGRELLAELLA---RWPDLDAVFCS-------NDDLA---LGALFECQRRG-----ISVPEDIAIAGFGDLEI 217 (268)
T ss_pred ccCCCHHHHHHHHHHHHh---CCCCCCEEEEC-------CcHHH---HHHHHHHHHhC-----CCCCcceEEEecCCchh
Confidence 344555555666666553 36778877742 24556 89999999875 2334 3 555666532
Q ss_pred HHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 382 QRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 382 ~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
. +.+. -.+.+. .-++.+..+.+++++.
T Consensus 218 --~-~~~~-----~~itti----~~~~~~~g~~a~~~l~ 244 (268)
T cd01575 218 --A-AALP-----PALTTV----RTPRREIGRRAAELLL 244 (268)
T ss_pred --h-hccC-----CCceee----eCCHHHHHHHHHHHHH
Confidence 1 1111 233332 2567777777776654
No 225
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=21.48 E-value=7.6e+02 Score=24.03 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=49.0
Q ss_pred CcEEEEEcCCcHH------HHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~------~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
++|+++....+.. --..+++..+ |-.+...+-.-++.+.+.-+++++-+++ .++..++++. .
T Consensus 177 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--gi~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 244 (343)
T PRK10727 177 TRIGYLCSNHSISDAEDRLQGYYDALAES--GIPANDRLVTFGEPDESGGEQAMTELLG---RGRNFTAVAC-------Y 244 (343)
T ss_pred ccEEEEeCCccccchHHHHHHHHHHHHHC--CCCCChhhEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------c
Confidence 6788885332211 1124666664 3332211122355565555566665554 2455677762 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCC
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGP 379 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~ 379 (423)
++.+| .|+++++++++ .++| -|+...+.
T Consensus 245 nD~~A---~g~~~al~~~G-----~~vP~disVigfD~~ 275 (343)
T PRK10727 245 NDSMA---AGAMGVLNDNG-----IDVPGEISLIGFDDV 275 (343)
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCcceeEEeecCc
Confidence 36677 89999999986 3455 34446654
No 226
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=21.25 E-value=2.6e+02 Score=26.89 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL 385 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~ 385 (423)
+..+++.++++++-+. +|+.++||+-. +++ ++ -.+++.+++. .++||+. .|..-.+
T Consensus 163 a~i~p~~i~~~~~~~~-----~~~aDAifisC-TnL-rt-------~~vi~~lE~~------lGkPVls----SNqat~W 218 (239)
T TIGR02990 163 ARISPDCIVEAALAAF-----DPDADALFLSC-TAL-RA-------ATCAQRIEQA------IGKPVVT----SNQATAW 218 (239)
T ss_pred eecCHHHHHHHHHHhc-----CCCCCEEEEeC-CCc-hh-------HHHHHHHHHH------HCCCEEE----HHHHHHH
Confidence 4478888888777652 68899999753 222 11 2344445443 3689887 4677788
Q ss_pred HHHHhhhhhcCCce
Q 014512 386 AKMRALAEEIGLPI 399 (423)
Q Consensus 386 ~~l~~~~~~~Gip~ 399 (423)
..|+ .+|++.
T Consensus 219 ~~Lr----~~G~~~ 228 (239)
T TIGR02990 219 RCLR----LCGDPD 228 (239)
T ss_pred HHHH----HcCCCC
Confidence 9998 567654
No 227
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=21.10 E-value=1.3e+02 Score=27.29 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCHHHHHHHHHhhhhhcCCceee
Q 014512 369 RMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEV 401 (423)
Q Consensus 369 ~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~ 401 (423)
++|+++.=+|.....+.+.+.++.+..|+|++.
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvt 60 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVA 60 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEE
Confidence 577777644544456667777777788998873
No 228
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=20.81 E-value=7.7e+02 Score=25.99 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=42.2
Q ss_pred EEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHH
Q 014512 333 RALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGIC 412 (423)
Q Consensus 333 ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av 412 (423)
+++.-+.|.-..|.++ .+...+++.+ ..+.++.. .+.--.|..-|+.+++..++|+|......+|...+
T Consensus 103 i~lvG~~GvGKTTtaa----KLA~~l~~~G------~kV~lV~~-D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~ 171 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCT----KLAYYYQRKG------FKPCLVCA-DTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIA 171 (429)
T ss_pred EEEECCCCCCHHHHHH----HHHHHHHHCC------CCEEEEcC-cccchhHHHHHHHHhhccCCeEEeecCCCCHHHHH
Confidence 3333367766654433 4544454432 23333332 22223566666666667888887554455677777
Q ss_pred HHHHHHHHh
Q 014512 413 KQAIECISA 421 (423)
Q Consensus 413 ~~~v~~~~~ 421 (423)
..+++.++.
T Consensus 172 ~~~l~~~~~ 180 (429)
T TIGR01425 172 SEGVEKFKK 180 (429)
T ss_pred HHHHHHHHh
Confidence 767766553
No 229
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=20.51 E-value=2.6e+02 Score=23.81 Aligned_cols=37 Identities=8% Similarity=-0.120 Sum_probs=30.1
Q ss_pred CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec
Q 014512 298 LGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG 338 (423)
Q Consensus 298 paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ 338 (423)
--||+-+--+.+.+++.++++-.++ -+++..||||.+
T Consensus 35 ~~Nf~vv~~~Tt~~eiedaF~~f~~----RdDIaIiLInq~ 71 (121)
T KOG3432|consen 35 EPNFLVVDSKTTVEEIEDAFKSFTA----RDDIAIILINQF 71 (121)
T ss_pred CCCEEEEeccCCHHHHHHHHHhhcc----ccCeEEEEEhHH
Confidence 3699999999999999999998765 566766777654
No 230
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.46 E-value=3.1e+02 Score=26.23 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=39.4
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
+++|- -+|..+++..+-+. .|+.|++|+.+ +.+= | -.+|+.+.+- .++|||. .|.
T Consensus 158 ~eigr-~~P~~~y~lAk~~~-----~~~~DaiFiSC-------TnlR-t-~eii~~lE~~------~G~PVvs----SN~ 212 (238)
T COG3473 158 LEIGR-QEPWAVYRLAKEVF-----TPDADAIFISC-------TNLR-T-FEIIEKLERD------TGVPVVS----SNQ 212 (238)
T ss_pred chhcc-cChHHHHHHHHHhc-----CCCCCeEEEEe-------eccc-c-HHHHHHHHHH------hCCceee----ccH
Confidence 44444 44555666666555 69999999753 3322 2 2344445443 4799987 467
Q ss_pred HHHHHHHHh
Q 014512 382 QRGLAKMRA 390 (423)
Q Consensus 382 ~~a~~~l~~ 390 (423)
.-.+-.|+.
T Consensus 213 AT~W~~Lr~ 221 (238)
T COG3473 213 ATLWMALRL 221 (238)
T ss_pred HHHHHHHHH
Confidence 778888883
No 231
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=20.32 E-value=6.9e+02 Score=23.06 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL 385 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~ 385 (423)
++.+.+..+++++-+|+ +.+++++++. ..+.+| .++++++++++.. +.+ --++...+. ..+.
T Consensus 163 ~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~d~~a---~~~~~~l~~~g~~--~~d-i~ivg~d~~--~~~~ 224 (272)
T cd06301 163 ANWSRAEAMDLMENWLS---SGGKIDAVVA-------NNDEMA---LGAIMALKAAGKS--DKD-VPVAGIDGT--PDAL 224 (272)
T ss_pred CCccHHHHHHHHHHHHH---hCCCCCEEEE-------CCCchH---HHHHHHHHHcCCC--CCC-cEEEeeCCC--HHHH
Confidence 44455555555555553 3567787663 224566 8999999987621 101 134445553 4444
Q ss_pred HHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 386 AKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 386 ~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
..++ .|.+.... ..++.+....+++++
T Consensus 225 ~~~~-----~~~~~ttv--~~~~~~~g~~a~~~l 251 (272)
T cd06301 225 AAVK-----KGDLDVTV--FQDAKGQGAGALDAA 251 (272)
T ss_pred HHHH-----hCCceEEE--ecCHHHHHHHHHHHH
Confidence 4443 24322211 145555566555554
No 232
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.26 E-value=3.6e+02 Score=27.71 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=21.7
Q ss_pred ceeEEEEeCCCCHHHHHHHHHhhhhhcCCce
Q 014512 369 RMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399 (423)
Q Consensus 369 ~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~ 399 (423)
++||++..||.|-....++++++..+.|+..
T Consensus 71 gIkvI~NaGg~np~~~a~~v~eia~e~Gl~l 101 (362)
T PF07287_consen 71 GIKVITNAGGLNPAGCADIVREIARELGLSL 101 (362)
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 5777777777777777777777766766653
No 233
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.23 E-value=6.7e+02 Score=22.91 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=61.1
Q ss_pred CcEEEEEcCCc-HH------HHHHHHhhccCCCCCC-CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCC
Q 014512 270 GRIWTMVAGGG-AS------VIYADTVGDLGYASEL-GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGI 341 (423)
Q Consensus 270 g~I~~i~nG~G-~~------~~~~D~l~~~g~gg~p-aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi 341 (423)
.+|++++..-+ .. ....+.+..+ |..+ ...+... +.+.+..+++++-+++ +.+..++++..
T Consensus 117 ~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~---~~~~~~ai~~~----- 185 (267)
T cd06283 117 ERILFVTEPLDEISPRMERYEGFKEALAEH--GIGVNEELIEID-DEDADELDERLRQLLN---KPKKKTAIFAA----- 185 (267)
T ss_pred CcEEEEecCccccccHHHHHHHHHHHHHHc--CCCCCcceeEec-ccchHHHHHHHHHHHc---CCCCCCEEEEc-----
Confidence 57888864332 11 1234666653 3222 2233332 3334445566665553 35667777742
Q ss_pred cchHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 342 ANFTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 342 ~~~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
++.+| .|+++++++++. .+| -++..+++.. + +.+. -++.++ ..++.+....++++
T Consensus 186 --~d~~a---~g~~~~l~~~g~-----~vp~di~v~g~d~~~~--~-~~~~-----~~l~tv----~~~~~~~g~~a~~~ 243 (267)
T cd06283 186 --NGLIL---LEVLKALKELGI-----RIPEDVGLIGFDDTEW--A-ELIG-----PGITTI----AQPTYEMGKTAAEL 243 (267)
T ss_pred --CcHHH---HHHHHHHHHcCC-----CCccceEEEEeCCccH--h-hhcC-----CcceEe----cCCHHHHHHHHHHH
Confidence 25566 899999998752 233 4455776532 2 2222 244333 25667777777765
Q ss_pred H
Q 014512 419 I 419 (423)
Q Consensus 419 ~ 419 (423)
+
T Consensus 244 l 244 (267)
T cd06283 244 L 244 (267)
T ss_pred H
Confidence 4
Done!