Query 014512
Match_columns 423
No_of_seqs 206 out of 1896
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 9.1E-98 3E-102 763.2 30.5 413 1-417 1-420 (425)
2 3pff_A ATP-citrate synthase; p 100.0 5.8E-94 2E-98 781.3 30.0 414 1-418 1-421 (829)
3 2fp4_B Succinyl-COA ligase [GD 100.0 3.8E-84 1.3E-88 659.6 39.7 374 4-421 1-394 (395)
4 2nu8_B SCS-beta, succinyl-COA 100.0 2.7E-83 9.4E-88 652.5 38.7 374 4-421 1-387 (388)
5 3ufx_B Succinyl-COA synthetase 100.0 4.6E-82 1.6E-86 644.9 30.6 368 4-422 1-377 (397)
6 1wr2_A Hypothetical protein PH 100.0 9.4E-34 3.2E-38 269.8 19.8 205 1-222 15-238 (238)
7 2csu_A 457AA long hypothetical 99.8 6.4E-21 2.2E-25 197.7 14.9 157 221-420 262-446 (457)
8 3dmy_A Protein FDRA; predicted 99.3 1.9E-11 6.3E-16 126.8 12.2 128 269-421 249-414 (480)
9 1vkz_A Phosphoribosylamine--gl 98.8 1.3E-07 4.6E-12 95.9 17.7 101 7-126 106-206 (412)
10 4eg0_A D-alanine--D-alanine li 98.8 1.2E-07 4.1E-12 92.7 16.0 103 7-133 107-213 (317)
11 2cqy_A Propionyl-COA carboxyla 98.8 1E-09 3.6E-14 89.9 0.8 98 6-121 7-106 (108)
12 3ouz_A Biotin carboxylase; str 98.7 1.2E-07 4.2E-12 97.1 15.7 109 7-133 119-229 (446)
13 3e5n_A D-alanine-D-alanine lig 98.7 1.8E-07 6.1E-12 94.6 16.4 99 7-130 159-261 (386)
14 3aw8_A PURK, phosphoribosylami 98.7 1.1E-07 3.9E-12 94.7 12.2 102 6-133 95-197 (369)
15 4e4t_A Phosphoribosylaminoimid 98.7 3.6E-07 1.2E-11 93.4 16.1 100 7-133 133-237 (419)
16 3glk_A Acetyl-COA carboxylase 98.7 2.9E-07 1E-11 97.1 15.3 106 6-133 163-297 (540)
17 3jrx_A Acetyl-COA carboxylase 98.6 4.1E-07 1.4E-11 96.7 16.1 105 7-133 180-313 (587)
18 3i12_A D-alanine-D-alanine lig 98.6 8.3E-07 2.9E-11 88.8 17.6 98 6-126 139-238 (364)
19 1kjq_A GART 2, phosphoribosylg 98.6 3.5E-07 1.2E-11 91.6 14.6 99 9-127 114-213 (391)
20 3mjf_A Phosphoribosylamine--gl 98.6 2E-07 6.9E-12 95.4 13.0 101 7-126 107-207 (431)
21 3lp8_A Phosphoribosylamine-gly 98.6 2.9E-07 1E-11 94.6 13.6 101 7-126 123-223 (442)
22 1a9x_A Carbamoyl phosphate syn 98.6 5.4E-07 1.9E-11 102.2 17.0 104 7-132 128-231 (1073)
23 2w70_A Biotin carboxylase; lig 98.6 6E-07 2.1E-11 91.9 15.4 107 8-132 116-225 (449)
24 1w96_A ACC, acetyl-coenzyme A 98.6 5.7E-07 2E-11 95.0 15.4 105 7-131 173-301 (554)
25 3k5i_A Phosphoribosyl-aminoimi 98.6 9E-07 3.1E-11 89.8 15.8 97 7-127 123-220 (403)
26 3q2o_A Phosphoribosylaminoimid 98.6 2.5E-06 8.6E-11 85.7 18.7 100 7-132 112-212 (389)
27 1ehi_A LMDDL2, D-alanine:D-lac 98.6 1.9E-06 6.4E-11 86.6 17.4 96 7-126 135-234 (377)
28 2dwc_A PH0318, 433AA long hypo 98.5 8.1E-07 2.8E-11 90.5 14.1 100 9-128 122-224 (433)
29 4dim_A Phosphoribosylglycinami 98.5 1.6E-06 5.3E-11 87.3 16.0 94 8-124 110-203 (403)
30 3tqt_A D-alanine--D-alanine li 98.5 1.9E-06 6.5E-11 86.7 15.1 96 7-125 140-238 (372)
31 3r5x_A D-alanine--D-alanine li 98.5 1.2E-06 4.1E-11 84.7 13.1 91 7-122 97-188 (307)
32 1a9x_A Carbamoyl phosphate syn 98.5 1.9E-06 6.5E-11 97.8 16.4 98 8-127 675-772 (1073)
33 3n6r_A Propionyl-COA carboxyla 98.4 3.2E-07 1.1E-11 99.3 9.1 110 6-133 114-225 (681)
34 2z04_A Phosphoribosylaminoimid 98.4 3.4E-07 1.2E-11 91.0 8.0 101 6-132 91-192 (365)
35 3ln6_A Glutathione biosynthesi 98.4 3.5E-07 1.2E-11 99.9 8.6 111 8-143 485-604 (750)
36 3u9t_A MCC alpha, methylcroton 98.4 3.6E-07 1.2E-11 98.8 8.1 109 7-133 141-251 (675)
37 1ulz_A Pyruvate carboxylase N- 98.4 1.4E-06 4.8E-11 89.2 11.9 107 8-132 115-223 (451)
38 3eth_A Phosphoribosylaminoimid 98.4 2.1E-06 7.2E-11 85.9 12.8 94 9-132 81-177 (355)
39 3se7_A VANA; alpha-beta struct 98.4 5.7E-06 2E-10 81.9 15.4 94 7-127 132-225 (346)
40 2vpq_A Acetyl-COA carboxylase; 98.4 1.7E-06 5.7E-11 88.6 11.6 107 8-132 115-223 (451)
41 2xcl_A Phosphoribosylamine--gl 98.3 2.5E-06 8.5E-11 86.5 12.1 101 7-126 102-202 (422)
42 3orq_A N5-carboxyaminoimidazol 98.3 1.3E-06 4.4E-11 87.8 9.5 99 8-132 111-210 (377)
43 2yrx_A Phosphoribosylglycinami 98.3 2.6E-06 9E-11 87.3 11.9 101 7-126 123-223 (451)
44 2dzd_A Pyruvate carboxylase; b 98.3 1.9E-06 6.7E-11 88.4 10.9 107 7-131 120-228 (461)
45 2ip4_A PURD, phosphoribosylami 98.3 2.9E-06 9.8E-11 86.0 12.0 97 7-126 101-197 (417)
46 3va7_A KLLA0E08119P; carboxyla 98.3 1.2E-06 4.2E-11 100.2 9.6 107 9-133 146-253 (1236)
47 2yw2_A Phosphoribosylamine--gl 98.3 3.6E-06 1.2E-10 85.4 12.2 101 7-126 102-202 (424)
48 2qf7_A Pyruvate carboxylase pr 98.3 1.2E-06 4.1E-11 100.0 9.4 108 7-132 134-243 (1165)
49 3hbl_A Pyruvate carboxylase; T 98.3 1.7E-06 5.8E-11 98.6 9.5 108 7-132 118-227 (1150)
50 2qk4_A Trifunctional purine bi 98.2 5.2E-06 1.8E-10 85.1 12.1 100 8-126 129-229 (452)
51 3vmm_A Alanine-anticapsin liga 98.2 2.8E-05 9.7E-10 80.6 16.9 95 6-114 138-234 (474)
52 4fu0_A D-alanine--D-alanine li 98.2 5.5E-05 1.9E-09 75.2 17.9 97 7-126 139-236 (357)
53 3vot_A L-amino acid ligase, BL 98.2 2.7E-05 9.3E-10 78.9 15.4 101 8-125 113-214 (425)
54 3k3p_A D-alanine--D-alanine li 98.1 1.3E-05 4.5E-10 80.8 11.8 96 7-125 161-259 (383)
55 2i87_A D-alanine-D-alanine lig 98.0 2.4E-05 8.2E-10 77.9 11.6 97 7-126 129-230 (364)
56 3ln7_A Glutathione biosynthesi 98.0 1.5E-05 5E-10 87.1 10.2 91 9-124 491-586 (757)
57 1iow_A DD-ligase, DDLB, D-ALA\ 97.9 3.4E-05 1.2E-09 74.0 10.4 90 7-122 96-193 (306)
58 3lwb_A D-alanine--D-alanine li 97.9 1.5E-05 5.2E-10 80.0 7.8 97 8-127 152-248 (373)
59 3ax6_A Phosphoribosylaminoimid 97.9 1.1E-05 3.7E-10 80.6 6.5 92 8-132 101-193 (380)
60 1e4e_A Vancomycin/teicoplanin 97.9 2.8E-05 9.6E-10 76.7 9.4 94 7-127 132-225 (343)
61 2pn1_A Carbamoylphosphate synt 97.9 3.1E-05 1.1E-09 75.4 9.4 93 7-130 114-209 (331)
62 2fb9_A D-alanine:D-alanine lig 97.8 8.8E-05 3E-09 72.6 10.8 93 7-126 118-210 (322)
63 1uc8_A LYSX, lysine biosynthes 97.8 1.5E-05 5.1E-10 75.3 5.0 93 8-122 89-184 (280)
64 2pvp_A D-alanine-D-alanine lig 97.8 6.9E-05 2.4E-09 75.0 9.6 89 7-118 149-237 (367)
65 2r7k_A 5-formaminoimidazole-4- 97.5 0.0002 6.9E-09 71.6 8.4 91 9-126 126-216 (361)
66 3mwd_B ATP-citrate synthase; A 97.1 0.0018 6.3E-08 63.9 10.5 94 269-382 168-264 (334)
67 2r85_A PURP protein PF1517; AT 97.1 0.0023 7.9E-08 61.8 10.3 90 8-126 101-190 (334)
68 3dmy_A Protein FDRA; predicted 96.8 0.0049 1.7E-07 63.8 10.8 120 269-420 112-236 (480)
69 2fp4_A Succinyl-COA ligase [GD 96.7 0.0033 1.1E-07 61.3 8.3 97 269-381 152-250 (305)
70 1oi7_A Succinyl-COA synthetase 96.7 0.011 3.6E-07 57.2 11.7 125 269-418 144-286 (288)
71 2yv2_A Succinyl-COA synthetase 96.6 0.0078 2.7E-07 58.4 9.8 126 269-418 151-294 (297)
72 1z2n_X Inositol 1,3,4-trisphos 96.6 0.0063 2.1E-07 58.8 9.2 87 9-122 100-188 (324)
73 2yv1_A Succinyl-COA ligase [AD 96.3 0.012 4.1E-07 57.0 9.0 124 269-418 150-291 (294)
74 2nu8_A Succinyl-COA ligase [AD 96.2 0.015 5E-07 56.2 8.7 124 269-417 144-285 (288)
75 2pbz_A Hypothetical protein; N 96.0 0.003 1E-07 62.0 3.0 78 12-126 103-180 (320)
76 4ffl_A PYLC; amino acid, biosy 96.0 0.0096 3.3E-07 58.6 6.6 78 8-130 104-181 (363)
77 1i7n_A Synapsin II; synapse, p 95.8 0.03 1E-06 54.6 9.3 87 11-124 121-210 (309)
78 3pff_A ATP-citrate synthase; p 95.5 0.055 1.9E-06 59.4 10.7 126 268-417 653-799 (829)
79 2p0a_A Synapsin-3, synapsin II 95.2 0.06 2.1E-06 53.3 9.1 87 11-124 138-227 (344)
80 2csu_A 457AA long hypothetical 94.9 0.14 4.8E-06 52.5 11.1 93 270-382 150-242 (457)
81 1pk8_A RAT synapsin I; ATP bin 94.7 0.073 2.5E-06 54.0 8.3 87 11-124 233-322 (422)
82 1gsa_A Glutathione synthetase; 94.3 0.06 2.1E-06 51.0 6.4 77 26-121 134-213 (316)
83 2q7d_A Inositol-tetrakisphosph 94.3 0.062 2.1E-06 53.1 6.7 81 22-124 133-216 (346)
84 3df7_A Putative ATP-grAsp supe 92.2 0.2 7E-06 48.2 6.4 68 12-125 111-178 (305)
85 2yxb_A Coenzyme B12-dependent 86.0 4.9 0.00017 34.8 10.0 112 280-421 34-145 (161)
86 2ehh_A DHDPS, dihydrodipicolin 77.6 22 0.00074 33.7 11.9 109 299-422 10-125 (294)
87 3l21_A DHDPS, dihydrodipicolin 76.0 20 0.00068 34.3 11.2 109 299-421 24-139 (304)
88 2yxg_A DHDPS, dihydrodipicolin 74.8 22 0.00074 33.6 11.0 109 299-422 10-125 (289)
89 3qfe_A Putative dihydrodipicol 73.6 25 0.00085 33.8 11.2 112 299-422 19-138 (318)
90 3flu_A DHDPS, dihydrodipicolin 72.9 26 0.0009 33.2 11.1 110 299-422 16-132 (297)
91 1ccw_A Protein (glutamate muta 72.8 18 0.0006 30.2 8.8 111 280-420 19-135 (137)
92 3qze_A DHDPS, dihydrodipicolin 71.8 24 0.00083 33.8 10.6 110 299-422 32-148 (314)
93 1o5k_A DHDPS, dihydrodipicolin 71.3 23 0.0008 33.8 10.4 108 299-421 22-136 (306)
94 3tak_A DHDPS, dihydrodipicolin 70.9 27 0.00093 33.0 10.7 109 300-422 11-126 (291)
95 3na8_A Putative dihydrodipicol 70.9 23 0.0008 34.0 10.3 110 299-422 33-149 (315)
96 3si9_A DHDPS, dihydrodipicolin 70.8 25 0.00085 33.8 10.5 110 299-422 31-147 (315)
97 1f6k_A N-acetylneuraminate lya 69.7 43 0.0015 31.6 11.8 110 300-422 13-129 (293)
98 3cpr_A Dihydrodipicolinate syn 68.4 48 0.0017 31.5 11.9 106 300-422 26-141 (304)
99 3s5o_A 4-hydroxy-2-oxoglutarat 67.5 29 0.001 33.1 10.2 112 299-422 23-141 (307)
100 3fkr_A L-2-keto-3-deoxyarabona 67.3 39 0.0013 32.2 11.0 111 299-422 17-136 (309)
101 1xky_A Dihydrodipicolinate syn 67.3 46 0.0016 31.6 11.5 109 300-422 22-137 (301)
102 4dpp_A DHDPS 2, dihydrodipicol 67.0 32 0.0011 33.8 10.5 108 299-420 68-182 (360)
103 3rst_A Signal peptide peptidas 66.7 12 0.00042 34.4 7.0 65 307-384 28-94 (240)
104 2wkj_A N-acetylneuraminate lya 66.4 42 0.0014 31.9 11.0 110 300-422 21-136 (303)
105 2r8w_A AGR_C_1641P; APC7498, d 66.0 41 0.0014 32.5 11.0 111 299-422 43-159 (332)
106 3h5d_A DHDPS, dihydrodipicolin 65.9 30 0.001 33.1 9.9 110 299-422 16-133 (311)
107 3b4u_A Dihydrodipicolinate syn 65.3 51 0.0017 31.1 11.3 110 300-422 13-129 (294)
108 3m5v_A DHDPS, dihydrodipicolin 63.4 40 0.0014 32.0 10.2 104 305-422 22-133 (301)
109 2v9d_A YAGE; dihydrodipicolini 62.5 43 0.0015 32.5 10.4 110 299-422 40-156 (343)
110 3dz1_A Dihydrodipicolinate syn 60.4 51 0.0017 31.5 10.4 108 300-422 18-131 (313)
111 2ojp_A DHDPS, dihydrodipicolin 58.9 53 0.0018 31.0 10.1 108 300-421 11-125 (292)
112 3e96_A Dihydrodipicolinate syn 58.6 57 0.0019 31.1 10.4 109 299-422 20-136 (316)
113 2cby_A ATP-dependent CLP prote 58.5 13 0.00046 33.4 5.5 73 302-388 30-104 (208)
114 3daq_A DHDPS, dihydrodipicolin 57.3 59 0.002 30.6 10.1 108 300-422 13-127 (292)
115 3eb2_A Putative dihydrodipicol 55.6 23 0.00078 33.8 6.9 107 299-422 13-129 (300)
116 3d0c_A Dihydrodipicolinate syn 54.7 58 0.002 31.1 9.7 107 299-422 20-136 (314)
117 2rfg_A Dihydrodipicolinate syn 52.6 50 0.0017 31.3 8.8 102 305-422 15-125 (297)
118 3t7a_A Inositol pyrophosphate 52.1 5.7 0.00019 38.6 1.9 45 9-61 99-154 (330)
119 1yg6_A ATP-dependent CLP prote 51.3 20 0.00069 31.7 5.4 46 327-385 53-100 (193)
120 3a5f_A Dihydrodipicolinate syn 49.4 54 0.0019 30.8 8.5 103 301-421 13-125 (291)
121 3h75_A Periplasmic sugar-bindi 48.9 1.5E+02 0.0051 27.6 11.7 119 270-419 146-273 (350)
122 2vc6_A MOSA, dihydrodipicolina 48.3 65 0.0022 30.3 8.8 100 305-421 15-124 (292)
123 2xij_A Methylmalonyl-COA mutas 47.7 53 0.0018 35.6 8.8 95 300-420 634-730 (762)
124 1y7o_A ATP-dependent CLP prote 46.8 26 0.00087 31.8 5.4 71 304-388 50-122 (218)
125 3dbi_A Sugar-binding transcrip 45.3 84 0.0029 29.2 9.1 119 270-420 182-309 (338)
126 2r91_A 2-keto-3-deoxy-(6-phosp 44.8 1.4E+02 0.0049 27.7 10.6 106 300-422 9-121 (286)
127 3nq4_A 6,7-dimethyl-8-ribityll 44.5 1.5E+02 0.0052 25.4 11.9 125 269-420 12-149 (156)
128 3bf0_A Protease 4; bacterial, 43.5 23 0.00078 37.2 5.1 65 306-384 320-386 (593)
129 3qk7_A Transcriptional regulat 42.9 1.1E+02 0.0036 27.9 9.3 91 270-380 127-226 (294)
130 3zxn_A RSBS, anti-sigma-factor 42.8 1.3E+02 0.0044 24.2 10.4 104 302-421 16-120 (123)
131 3ezx_A MMCP 1, monomethylamine 42.7 1.4E+02 0.0047 26.7 9.7 106 280-417 108-213 (215)
132 2kln_A Probable sulphate-trans 40.8 1.3E+02 0.0044 24.0 8.5 85 309-415 29-121 (130)
133 1xrs_B D-lysine 5,6-aminomutas 40.7 1.7E+02 0.006 27.2 10.3 97 301-420 160-257 (262)
134 2f6i_A ATP-dependent CLP prote 40.5 47 0.0016 30.0 6.1 68 302-384 42-111 (215)
135 3gv0_A Transcriptional regulat 39.0 2.1E+02 0.0073 25.5 11.1 119 270-420 128-255 (288)
136 2hmc_A AGR_L_411P, dihydrodipi 38.4 1.8E+02 0.0061 28.1 10.3 105 300-420 36-147 (344)
137 1kz1_A 6,7-dimethyl-8-ribityll 37.9 2E+02 0.0067 24.8 10.5 125 270-421 18-156 (159)
138 2lnd_A De novo designed protei 37.2 1.4E+02 0.0047 22.9 7.2 61 352-421 41-101 (112)
139 3zwt_A Dihydroorotate dehydrog 37.1 1.3E+02 0.0043 29.5 9.1 88 301-399 150-250 (367)
140 3k4h_A Putative transcriptiona 36.7 1.5E+02 0.0051 26.5 9.2 119 270-420 132-259 (292)
141 1c2y_A Protein (lumazine synth 36.3 2.1E+02 0.007 24.6 11.8 125 270-420 14-148 (156)
142 2i0f_A 6,7-dimethyl-8-ribityll 36.3 2.1E+02 0.007 24.6 9.3 124 271-420 14-150 (157)
143 1hqk_A 6,7-dimethyl-8-ribityll 35.8 1.5E+02 0.0051 25.4 8.2 124 270-420 13-148 (154)
144 1rvv_A Riboflavin synthase; tr 35.8 1.5E+02 0.0052 25.4 8.3 124 270-420 13-148 (154)
145 3mvn_A UDP-N-acetylmuramate:L- 35.6 1.2E+02 0.0041 25.5 7.8 94 306-420 43-137 (163)
146 1y80_A Predicted cobalamin bin 35.6 1.7E+02 0.0058 25.6 9.1 106 280-419 104-209 (210)
147 3d8u_A PURR transcriptional re 35.5 2.3E+02 0.0079 24.9 11.3 119 270-420 121-248 (275)
148 2lqo_A Putative glutaredoxin R 34.7 62 0.0021 24.9 5.2 64 9-91 18-85 (92)
149 3viv_A 441AA long hypothetical 33.8 54 0.0018 30.0 5.4 49 328-389 37-90 (230)
150 4a26_A Putative C-1-tetrahydro 33.6 2.8E+02 0.0095 26.4 10.6 90 299-403 69-196 (300)
151 1req_A Methylmalonyl-COA mutas 33.5 99 0.0034 33.3 8.1 97 300-420 626-722 (727)
152 3ngx_A Bifunctional protein fo 32.8 3.1E+02 0.011 25.7 12.1 123 271-414 29-193 (276)
153 3gyb_A Transcriptional regulat 32.3 2.6E+02 0.009 24.6 12.3 118 270-420 119-243 (280)
154 2hsg_A Glucose-resistance amyl 31.9 2.2E+02 0.0077 26.1 9.8 91 270-380 178-278 (332)
155 3tml_A 2-dehydro-3-deoxyphosph 31.8 84 0.0029 29.8 6.6 25 376-400 68-92 (288)
156 2fep_A Catabolite control prot 31.0 2.1E+02 0.0073 25.6 9.2 78 270-362 134-218 (289)
157 3uug_A Multiple sugar-binding 30.9 1.7E+02 0.0057 26.8 8.6 95 306-420 181-276 (330)
158 3kke_A LACI family transcripti 30.9 1.9E+02 0.0064 26.2 8.9 119 270-420 132-264 (303)
159 1qpz_A PURA, protein (purine n 30.5 1.9E+02 0.0064 26.8 9.0 91 270-380 178-277 (340)
160 3egc_A Putative ribose operon 29.6 2.3E+02 0.008 25.2 9.3 119 270-420 126-253 (291)
161 3brq_A HTH-type transcriptiona 29.6 2.2E+02 0.0076 25.2 9.1 119 270-420 140-267 (296)
162 3g85_A Transcriptional regulat 29.6 2.3E+02 0.0079 25.2 9.2 105 285-419 149-256 (289)
163 3l07_A Bifunctional protein fo 29.5 3.6E+02 0.012 25.4 10.6 36 299-338 66-101 (285)
164 2rgy_A Transcriptional regulat 29.4 2E+02 0.007 25.7 8.8 77 270-362 129-212 (290)
165 1f76_A Dihydroorotate dehydrog 27.9 2.6E+02 0.009 26.3 9.6 81 310-400 152-242 (336)
166 1w3i_A EDA, 2-keto-3-deoxy glu 27.8 3.7E+02 0.013 24.9 11.0 106 301-422 10-122 (293)
167 3rot_A ABC sugar transporter, 27.5 2.7E+02 0.0093 24.9 9.4 122 270-419 131-258 (297)
168 3ezx_A MMCP 1, monomethylamine 27.4 2E+02 0.0068 25.6 8.1 46 372-417 96-141 (215)
169 1qd1_A Formiminotransferase-cy 27.4 4.1E+02 0.014 25.5 10.5 30 376-405 95-128 (325)
170 1b0a_A Protein (fold bifunctio 27.3 4E+02 0.014 25.1 11.5 99 300-413 66-201 (288)
171 3h5o_A Transcriptional regulat 27.0 2.9E+02 0.01 25.4 9.7 78 270-362 179-262 (339)
172 3h5t_A Transcriptional regulat 26.9 3.8E+02 0.013 24.9 10.6 102 285-420 228-333 (366)
173 2nuw_A 2-keto-3-deoxygluconate 26.8 3.7E+02 0.013 24.9 10.3 106 301-422 10-122 (288)
174 1tjy_A Sugar transport protein 26.7 3.6E+02 0.012 24.5 11.1 87 306-420 169-256 (316)
175 4a5o_A Bifunctional protein fo 26.6 4.1E+02 0.014 25.0 11.0 100 299-413 67-203 (286)
176 1tg6_A Putative ATP-dependent 26.4 1.2E+02 0.0041 28.6 6.6 73 302-388 85-159 (277)
177 2nwr_A 2-dehydro-3-deoxyphosph 26.4 1.6E+02 0.0055 27.5 7.4 61 334-400 5-79 (267)
178 1dbq_A Purine repressor; trans 26.2 2.4E+02 0.0082 25.0 8.6 91 270-380 127-226 (289)
179 1th8_B Anti-sigma F factor ant 25.0 2.3E+02 0.0078 21.5 7.7 71 330-415 43-113 (116)
180 1di0_A Lumazine synthase; tran 25.0 2.2E+02 0.0074 24.5 7.4 114 281-420 28-149 (158)
181 3cf4_G Acetyl-COA decarboxylas 24.9 87 0.003 26.8 5.0 32 369-400 35-66 (170)
182 3kjx_A Transcriptional regulat 24.8 1.9E+02 0.0064 26.9 7.8 119 270-420 186-314 (344)
183 3fs2_A 2-dehydro-3-deoxyphosph 24.5 1.4E+02 0.0048 28.4 6.7 56 338-400 48-116 (298)
184 1p9l_A Dihydrodipicolinate red 24.3 4E+02 0.014 24.2 10.6 51 369-423 69-120 (245)
185 3o9z_A Lipopolysaccaride biosy 24.2 4.3E+02 0.015 24.5 11.9 127 271-420 5-146 (312)
186 3oa2_A WBPB; oxidoreductase, s 23.7 4.5E+02 0.015 24.5 11.1 128 271-420 5-147 (318)
187 2yxb_A Coenzyme B12-dependent 23.6 1.2E+02 0.0042 25.7 5.6 46 372-417 22-67 (161)
188 3p04_A Uncharacterized BCR; SE 23.6 1.2E+02 0.0042 23.4 5.0 41 334-389 8-48 (87)
189 4fn4_A Short chain dehydrogena 23.1 3.9E+02 0.013 24.3 9.4 89 264-375 1-90 (254)
190 3bf0_A Protease 4; bacterial, 22.9 1.2E+02 0.0039 31.8 6.3 66 308-389 70-138 (593)
191 1jub_A Dihydroorotate dehydrog 22.4 3.1E+02 0.011 25.4 8.8 79 304-399 100-188 (311)
192 1ccw_A Protein (glutamate muta 22.3 82 0.0028 26.0 4.1 47 372-418 7-53 (137)
193 3qwd_A ATP-dependent CLP prote 21.9 1.9E+02 0.0065 25.7 6.7 72 303-388 31-104 (203)
194 3i0p_A Malate dehydrogenase; a 21.9 1.6E+02 0.0056 28.8 6.8 65 328-400 280-345 (365)
195 3sz8_A 2-dehydro-3-deoxyphosph 21.7 1.5E+02 0.0051 28.1 6.2 56 338-400 27-95 (285)
196 3llo_A Prestin; STAS domain, c 21.5 2.3E+02 0.0078 22.8 6.8 70 329-415 63-138 (143)
197 2o20_A Catabolite control prot 21.2 3.5E+02 0.012 24.7 8.9 88 270-379 181-277 (332)
198 4hyl_A Stage II sporulation pr 21.0 2.4E+02 0.008 21.7 6.6 64 338-415 49-112 (117)
199 3bbl_A Regulatory protein of L 20.9 4E+02 0.014 23.6 9.0 117 270-419 126-254 (287)
200 4dgf_A Sulfate transporter sul 20.8 2.4E+02 0.0083 22.5 6.8 77 330-421 52-131 (135)
201 2obx_A DMRL synthase 1, 6,7-di 20.8 2.4E+02 0.0081 24.2 6.8 115 280-420 28-150 (157)
202 3h75_A Periplasmic sugar-bindi 20.5 3.5E+02 0.012 24.9 8.8 119 276-409 120-245 (350)
203 3rot_A ABC sugar transporter, 20.3 4.6E+02 0.016 23.3 9.6 114 276-409 110-229 (297)
204 1hmj_A RPB5, protein (subunit 20.3 1E+02 0.0035 23.4 3.8 27 6-37 15-41 (78)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=9.1e-98 Score=763.18 Aligned_cols=413 Identities=43% Similarity=0.742 Sum_probs=370.0
Q ss_pred CCCCCCCHHHHHHHHHHchhCCCCCccCCCceEEec-CCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHH
Q 014512 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIE-STNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLA 79 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~-~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e 79 (423)
||++.++|||+|+||++|+.|++.. +...++.+++ .++++||.++++|||++|||||+|+++|||||+|||+++.|++
T Consensus 1 m~~k~i~Ey~~K~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~e 79 (425)
T 3mwd_A 1 MSAKAISEQTGKELLYKFICTTSAI-QNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD 79 (425)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCB-CSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred CCchhHhHHHHHHHHHHhccccCCc-cCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHH
Confidence 8999999999999999995555321 2222344444 3468999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhccCCcceeEEEEEeecCC--CceEEEEEEEeCCCCeeeeecCCCcccccccceeEEEecCCccC
Q 014512 80 QAATFVKECLGKEMEMSECKGPITTFIIEPFIPH--NEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGAC 157 (423)
Q Consensus 80 ea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~--~~E~ylgi~~D~~~p~il~s~~GGv~iE~~~d~~~~lpi~~~~~ 157 (423)
|+++++++|+++.+.++.+.+.+++|+||+|+++ ++|+|+|+++||.+|+|+||++|||+||+++|++.++|+++..+
T Consensus 80 ev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~ 159 (425)
T 3mwd_A 80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK 159 (425)
T ss_dssp HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCC
T ss_pred HHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCccc
Confidence 9999999999988754345567899999999986 49999999999999999999999999999999887778888778
Q ss_pred CCHhhH-HHHHhcCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhcccccccccccC
Q 014512 158 LASETS-APLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWGNIEF 235 (423)
Q Consensus 158 l~~~~a-~~l~~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~~~~~ 235 (423)
+....+ ++++.++++.++++++++|.+||++|.++|++++|||||++ .+| ++|+|||+++||||.|||++.|..+++
T Consensus 160 l~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~lDDnA~fR~~~~~~~~~~ 238 (425)
T 3mwd_A 160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEF 238 (425)
T ss_dssp CCHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEEGGGHHHHHHHHCSCCC
T ss_pred cCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceeecccchhhhChhhhhhhhc
Confidence 888777 67888888899999999999999999999999999999999 555 999999999999999999988998888
Q ss_pred CCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCC--CCCceeeccCCCCHHHH
Q 014512 236 PLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEGEV 313 (423)
Q Consensus 236 ~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg--~paN~lD~gG~a~~~~~ 313 (423)
+.+|.++.+|+|.++.++|++++++++||||+|+||||||+||||++|+|||+|..+ || +||||+|+||+|+.+++
T Consensus 239 ~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v 316 (425)
T 3mwd_A 239 PPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQT 316 (425)
T ss_dssp CCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHH
T ss_pred cccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHH
Confidence 888999999999888777777788899999999999999999999999999999995 78 79999999999999999
Q ss_pred HHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhh
Q 014512 314 LQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAE 393 (423)
Q Consensus 314 ~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~ 393 (423)
+++++.+++++++||+++++||||||||++|++||+||+||++|+++....+...++|||||++|||+++|+++|++.++
T Consensus 317 ~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~ 396 (425)
T 3mwd_A 317 YDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGK 396 (425)
T ss_dssp HHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCc
Confidence 99988888888889999999999999999999999999999999999743222257999999999999999999999888
Q ss_pred hcCCceeecCCCCCHHHHHHHHHH
Q 014512 394 EIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 394 ~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
+.|+|+|+||++++|++.|.+|++
T Consensus 397 ~lgip~~~~gpe~~~~~i~~~a~~ 420 (425)
T 3mwd_A 397 TTGIPIHVFGTETHMTAIVGMALG 420 (425)
T ss_dssp HHTCCEEEECTTSCTTHHHHHHTT
T ss_pred ccCCceEEeCccchHHHHHHHHhc
Confidence 889999999999999999999874
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-94 Score=781.30 Aligned_cols=414 Identities=43% Similarity=0.745 Sum_probs=373.5
Q ss_pred CCCCCCCHHHHHHHHHHchhCCCCCccCCCceEEec-CCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHH
Q 014512 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIE-STNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLA 79 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~-~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e 79 (423)
||++.++|||+|+||++|+.++++...|. ++.+++ .++++||.++++|||++|||||+|+++|||||+|||+++.|++
T Consensus 1 ms~k~i~Ey~aK~ll~~~~~~~~~~~~~~-~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~e 79 (829)
T 3pff_A 1 MSAKAISEQTGKELLYKFICTTSAIQNRF-KYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD 79 (829)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCBCSTT-CCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred CCchhHhHHHHHHHHHHhCccccccccCC-ceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHH
Confidence 89999999999999999944433222222 344444 4467999999999986899999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhccCCcceeEEEEEeecCC--CceEEEEEEEeCCCCeeeeecCCCcccccccceeEEEecCCccC
Q 014512 80 QAATFVKECLGKEMEMSECKGPITTFIIEPFIPH--NEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGAC 157 (423)
Q Consensus 80 ea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~--~~E~ylgi~~D~~~p~il~s~~GGv~iE~~~d~~~~lpi~~~~~ 157 (423)
|+++++++|+++.+.+..+.+.+++||||+|+++ ++|||+|+++||.+|+||||.+|||+||+++|+++++|++|..+
T Consensus 80 Ea~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGvdIE~vad~~~~~~I~p~~g 159 (829)
T 3pff_A 80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK 159 (829)
T ss_dssp HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCCHHHHSEEEEEETTCC
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEECCCCcchhhhhhhceEEecCCccc
Confidence 9999999999988753344567899999999986 49999999999999999999999999999999888889999889
Q ss_pred CCHhhH-HHHHhcCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhcccccccccccC
Q 014512 158 LASETS-APLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWGNIEF 235 (423)
Q Consensus 158 l~~~~a-~~l~~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~~~~~ 235 (423)
++.+++ ++++.++++.++++++++|.+||++|.++|++++|||||++ .+| ++|+|||+++||||+|||++.|..+++
T Consensus 160 l~~~~a~~~ll~g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lDDnA~fR~~~~~~~~~~ 238 (829)
T 3pff_A 160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEF 238 (829)
T ss_dssp CCHHHHHHTTTTTSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEEGGGHHHHHHHHCSCCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeeccchhhhCchhhhhhhc
Confidence 999988 77888898899999999999999999999999999999999 555 999999999999999999988998888
Q ss_pred CCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCC--CCCceeeccCCCCHHHH
Q 014512 236 PLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEGEV 313 (423)
Q Consensus 236 ~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg--~paN~lD~gG~a~~~~~ 313 (423)
+.+|.++.+|+|.++.++|++++++++||||+|+||||||+||||++|+|||+|+++ || +||||||+||+|+.+++
T Consensus 239 ~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~--Gg~~~pANFlDvGGga~~e~v 316 (829)
T 3pff_A 239 PPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQT 316 (829)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCTTTBCEEEEEESCCCHHHH
T ss_pred cccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHc--CCCCCCceeEEecCCCCHHHH
Confidence 888899999999888777778888899999999999999999999999999999995 77 79999999999999999
Q ss_pred HHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhh
Q 014512 314 LQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAE 393 (423)
Q Consensus 314 ~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~ 393 (423)
+++++.+++++++||++|++||||||||++||+||+||+|||+|+++....+...++||||||+|||+++|+++|++.++
T Consensus 317 ~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~ 396 (829)
T 3pff_A 317 YDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGK 396 (829)
T ss_dssp HHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCcc
Confidence 99988888888889999999999999999999999999999999999753222358999999999999999999999999
Q ss_pred hcCCceeecCCCCCHHHHHHHHHHH
Q 014512 394 EIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 394 ~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
+.|+|+++||++++|++.|.+|++.
T Consensus 397 ~lgl~i~v~g~e~~mt~iv~~a~~~ 421 (829)
T 3pff_A 397 TTGIPIHVFGTETHMTAIVGMALGH 421 (829)
T ss_dssp HHCCCEEEECTTSCTTHHHHHHHTS
T ss_pred ccCCcEEEeCCcccHHHHHHHHhcc
Confidence 9999999999999999999999754
No 3
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=3.8e-84 Score=659.56 Aligned_cols=374 Identities=23% Similarity=0.355 Sum_probs=339.6
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCC-cEEEeeccccCccccc-------CeeEEe
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSC-KLVVKPDMLFGKRGKS-------GLVALN 75 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~-pvVvKaqv~~g~Rgk~-------GgV~l~ 75 (423)
|+|+|||+|++|++| |||+| ++.++++ ++|+.++++++| + |+|||||+++|||||. |||+++
T Consensus 1 m~l~E~~aK~lL~~~-----GIpvp--~~~~~~s--~~ea~~~a~~lg-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~ 70 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDN-----GVKVQ--RFFVADT--ANEALEAAKRLN-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLT 70 (395)
T ss_dssp CBCCHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHT-CSSEEEEECCSSSCGGGCEETTSCBCSEEEE
T ss_pred CCCCHHHHHHHHHHC-----CcCCC--CeEEECC--HHHHHHHHHHcC-CCcEEEEEeeccCCCccCccccCCcCCEEEE
Confidence 789999999999999 99999 8888877 699999999998 7 8999999999999999 999999
Q ss_pred CCHHHHHHHHHHHhcccchh--ccCCc-ceeEEEEEeecCCCceEEEEEEEeCC-C-CeeeeecCCCcccccc----cce
Q 014512 76 LDLAQAATFVKECLGKEMEM--SECKG-PITTFIIEPFIPHNEEFYLNIVSERL-G-CSVSFSECGGIEIEEN----WDK 146 (423)
Q Consensus 76 ~s~eea~~~a~~~l~~~~~~--~g~~~-~v~~vlVe~~~~~~~E~ylgi~~D~~-~-p~il~s~~GGv~iE~~----~d~ 146 (423)
.|++|+++++++|+++.+.+ +|+.+ .+++++||+|+++++|+|++++.||. + |++++|.+||++||++ +|+
T Consensus 71 ~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~ 150 (395)
T 2fp4_B 71 KDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPEL 150 (395)
T ss_dssp SCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGG
T ss_pred CCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCce
Confidence 99999999999999876432 23333 47889999999999999999999998 4 8999999999999997 999
Q ss_pred eEEEecCCccCCCHhhHHHHHh--cCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchh
Q 014512 147 VKTIFVPTGACLASETSAPLVA--TLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAA 223 (423)
Q Consensus 147 ~~~lpi~~~~~l~~~~a~~l~~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~ 223 (423)
++++|+||..+++++++++++. |+++.+.+++++++.+||++|.++|++++|||||++ .+|+++|+|+|+.+||||.
T Consensus 151 i~~~~idp~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~ 230 (395)
T 2fp4_B 151 IFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAE 230 (395)
T ss_dssp CEEEECCTTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGG
T ss_pred EEEEecCCCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEeccccc
Confidence 9999999999999999999998 566789999999999999999999999999999999 7778999999999999999
Q ss_pred cccccccccccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceee
Q 014512 224 FKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 303 (423)
Q Consensus 224 ~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD 303 (423)
|||++++ .+++. .+.+|. |.++++++|+|++|+||||||+||||++|+|||+|..+ ||+||||+|
T Consensus 231 ~r~~~~~-~~~d~----~~~~~~--------e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~--Gg~paNflD 295 (395)
T 2fp4_B 231 FRQKDIF-AMDDK----SENEPI--------ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLN--GGKPANFLD 295 (395)
T ss_dssp GGCHHHH-TTCCC----TTSCHH--------HHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEE
T ss_pred ccCcchh-hhcCC----CccChh--------hhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcEE
Confidence 9999854 34222 223333 55678889999999999999999999999999999994 899999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH
Q 014512 304 YSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR 383 (423)
Q Consensus 304 ~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~ 383 (423)
+||+|++++|+++++++++ ||++|++|||+||||++|++|| +||++++++.. .++|||+|++|+|+++
T Consensus 296 vgG~a~~e~~~~al~~il~----d~~v~~ilvni~ggi~~~d~vA---~gii~a~~~~~-----~~~Pivvrl~G~n~~~ 363 (395)
T 2fp4_B 296 LGGGVKESQVYQAFKLLTA----DPKVEAILVNIFGGIVNCAIIA---NGITKACRELE-----LKVPLVVRLEGTNVHE 363 (395)
T ss_dssp CCSSCCHHHHHHHHHHHHH----CTTCCEEEEEEEESSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEEETTHHH
T ss_pred ECCCCCHHHHHHHHHHHhC----CCCCCEEEEEecCCccCcHHHH---HHHHHHHHhcC-----CCCeEEEEcCCCCHHH
Confidence 9999999999999999998 9999999999999999999999 99999999974 5799999999999999
Q ss_pred HHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 384 GLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 384 a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++++|+ ++|+|+|.+ +||++|++++++++++
T Consensus 364 g~~~L~----~~gl~~~~~---~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 364 AQNILT----NSGLPITSA---VDLEDAAKKAVASVTK 394 (395)
T ss_dssp HHHHHH----HTCSCCEEC---SSHHHHHHHHHHTTC-
T ss_pred HHHHHH----HCCCceEeC---CCHHHHHHHHHHHhhc
Confidence 999999 689999965 8999999999999875
No 4
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=2.7e-83 Score=652.46 Aligned_cols=374 Identities=22% Similarity=0.311 Sum_probs=340.5
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCc-EEEeeccccCcccccCeeEEeCCHHHHH
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCK-LVVKPDMLFGKRGKSGLVALNLDLAQAA 82 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (423)
|+|+|||+|++|++| |||+| ++.++++ ++|+.++++++| +| +|||||.++|||||+|||+++.|++|+.
T Consensus 1 m~l~E~~aK~lL~~~-----GIpvp--~~~~~~s--~eea~~aa~~lG-~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~ 70 (388)
T 2nu8_B 1 MNLHEYQAKQLFARY-----GLPAP--VGYACTT--PREAEEAASKIG-AGPWVVKCQVHAGGRGKAGGVKVVNSKEDIR 70 (388)
T ss_dssp CBCCHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHC-SSCEEEEECCSSSCTTTTTCEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHC-----CcCCC--CeeEECC--HHHHHHHHHHhC-CCeEEEEEecCCCCCCccCCEEEECCHHHHH
Confidence 789999999999999 99999 8888877 689999999998 79 9999999999999999999999999999
Q ss_pred HHHHHHhcccchh--ccCCc-ceeEEEEEeecCCCceEEEEEEEeCC-C-CeeeeecCCCcccccc----cceeEEEecC
Q 014512 83 TFVKECLGKEMEM--SECKG-PITTFIIEPFIPHNEEFYLNIVSERL-G-CSVSFSECGGIEIEEN----WDKVKTIFVP 153 (423)
Q Consensus 83 ~~a~~~l~~~~~~--~g~~~-~v~~vlVe~~~~~~~E~ylgi~~D~~-~-p~il~s~~GGv~iE~~----~d~~~~lpi~ 153 (423)
+++++|+++.+.+ +++.+ .+++++||+|+++++|+|++++.||. + |++++|.+|||+||.+ ||++.+++++
T Consensus 71 ~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~ 150 (388)
T 2nu8_B 71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD 150 (388)
T ss_dssp HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB
T ss_pred HHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecC
Confidence 9999999875522 34333 46889999999999999999999998 4 8999999999999985 4888999999
Q ss_pred CccCCCHhhHHHHHh--cCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhccccccc
Q 014512 154 TGACLASETSAPLVA--TLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKW 230 (423)
Q Consensus 154 ~~~~l~~~~a~~l~~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~ 230 (423)
|..+++++++++++. |+++.+++++++++.+||++|.++|++++|||||++ .+|+++|+|||+.+||||.|||++ |
T Consensus 151 P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~-~ 229 (388)
T 2nu8_B 151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-L 229 (388)
T ss_dssp TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-H
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcc-h
Confidence 988999999999998 467789999999999999999999999999999999 778899999999999999999997 7
Q ss_pred ccccCCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCH
Q 014512 231 GNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE 310 (423)
Q Consensus 231 ~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~ 310 (423)
.+++++ ++.+|+| ..+++++++|++|+||||||+||||++|+|||++..+ ||+||||+|+||+|+.
T Consensus 230 ~~~~~~----~~~~~~e--------~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~--Gg~~aNflD~gG~a~~ 295 (388)
T 2nu8_B 230 REMRDQ----SQEDPRE--------AQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLH--GGEPANFLDVGGGATK 295 (388)
T ss_dssp HHHCCG----GGSCHHH--------HHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSCCCH
T ss_pred hhhcCc----cccChhH--------HHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHc--CCCcCceeEecCCCCH
Confidence 667543 4455554 4567788999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHh
Q 014512 311 GEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRA 390 (423)
Q Consensus 311 ~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~ 390 (423)
++|+++++++++ ||++|++|||+||||++|++|| +||++++++.. .++|||+|++|+|+++++++|+
T Consensus 296 ~~~~~~~~~il~----d~~v~~ilvni~ggi~~~~~vA---~gii~a~~~~~-----~~~pivvrl~G~n~~~g~~~l~- 362 (388)
T 2nu8_B 296 ERVTEAFKIILS----DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVAEVG-----VNVPVVVRLEGNNAELGAKKLA- 362 (388)
T ss_dssp HHHHHHHHHHHT----STTCCEEEEEEESCSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEESTTHHHHHHHHH-
T ss_pred HHHHHHHHHHhc----CCCCCEEEEEecCCcCCchHHH---HHHHHHHHhcC-----CCCeEEEEeCCCCHHHHHHHHH-
Confidence 999999999998 9999999999999999999999 99999999974 5799999999999999999999
Q ss_pred hhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 391 LAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 391 ~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++|+|+|. .+||++|+++++++++.
T Consensus 363 ---~~g~~~~~---~~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 363 ---DSGLNIIA---AKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp ---TTCSSEEE---CSSHHHHHHHHHHHTTT
T ss_pred ---HCCCceec---CCCHHHHHHHHHHHhhc
Confidence 68999995 48999999999999875
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=4.6e-82 Score=644.90 Aligned_cols=368 Identities=20% Similarity=0.312 Sum_probs=336.8
Q ss_pred CCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
|+|+|||+|++|++| |||+| ++.++++ ++|+.++++++| +|||||+|++++||||+|||+++.|++|+.+
T Consensus 1 m~L~E~~aK~lL~~~-----GIpvp--~~~~~~s--~eea~~aa~~lG-~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~ 70 (397)
T 3ufx_B 1 MNLHEYQAKEILARY-----GVPVP--PGKVAYT--PEEAKRIAEEFG-KRVVIKAQVHVGGRGKAGGVKLADTPQEAYE 70 (397)
T ss_dssp CBCCHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHT-SCEEEEECCSSSCTTTTTCEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHC-----CCCCC--CeEEECC--HHHHHHHHHHcC-CCEEEEEccccCCCCccceEEEeCCHHHHHH
Confidence 899999999999999 99999 8899987 689999999998 8999999999999999999999999999999
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC-C-CeeeeecCCCcccccc----cceeEEEecCCccC
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL-G-CSVSFSECGGIEIEEN----WDKVKTIFVPTGAC 157 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~-~-p~il~s~~GGv~iE~~----~d~~~~lpi~~~~~ 157 (423)
++++|+++.+. | ..+.+++||+|+++++|+|+|++.||. + |+|+||++|||+||++ ||++++++|++..+
T Consensus 71 a~~~~~~~~~~--g--~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~~ 146 (397)
T 3ufx_B 71 KAQAILGMNIK--G--LTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKG 146 (397)
T ss_dssp HHHHHTTCEET--T--EECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTTB
T ss_pred HHHHhhhhhcc--C--CccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCCC
Confidence 99999987652 2 356889999999999999999999998 5 8999999999999974 67899999999889
Q ss_pred CCHhhHHHHHh--cCChhhHHHHHHHHHHHHHHhhccCccEeeeeceee-cCCceEEEeeeeeeccchhccccccccccc
Q 014512 158 LASETSAPLVA--TLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTL-VDRKPYPLDMRGELDDTAAFKNFKKWGNIE 234 (423)
Q Consensus 158 l~~~~a~~l~~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~~alDaki~idd~A~~r~~~~~~~~~ 234 (423)
+++.++++++. |+++. +++++++|.+||++|.++|++++|||||++ .+|+++|+|||+++||||.|||++ |..++
T Consensus 147 l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~~ 224 (397)
T 3ufx_B 147 FRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPD-LAELR 224 (397)
T ss_dssp CCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHH-HHTTH
T ss_pred CCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchh-hhhhc
Confidence 99999999987 57777 999999999999999999999999999999 778899999999999999999997 76675
Q ss_pred CCCCCCCCCCcccccccccchhhhccCCceEecCCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHH
Q 014512 235 FPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVL 314 (423)
Q Consensus 235 ~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~ 314 (423)
++ ++.+|+| .++++++++||+|+||||||+||+|++|+|+|++..+ ||+|+||+|+||++++++|+
T Consensus 225 ~~----~~~~~~e--------~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~--G~~~aN~lD~gG~a~~e~~~ 290 (397)
T 3ufx_B 225 EV----EAEHPLE--------VEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRV--GGKPANFLDIGGGAKADVVY 290 (397)
T ss_dssp HH----HCSSHHH--------HHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSCCCHHHHH
T ss_pred Cc----ccCCHhH--------HHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHc--CCCcCCcEecCCCCCHHHHH
Confidence 54 4555554 4678899999999999999999999999999999994 89999999999999999999
Q ss_pred HHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhh
Q 014512 315 QYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEE 394 (423)
Q Consensus 315 ~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~ 394 (423)
++++++++ ||++|++|||+|||+++|++|| ++|++++++.+ .++|||+|+.|+|+++++++|+ +
T Consensus 291 ~al~~~l~----d~~v~~ilv~i~ggi~~~~~vA---~~i~~a~~~~~-----~~kPvvv~~~G~~~~~~~~~l~----~ 354 (397)
T 3ufx_B 291 NALKVVLK----DPDVKGVFINIFGGITRADEVA---KGVIRALEEGL-----LTKPVVMRVAGTAEEEAKKLLE----G 354 (397)
T ss_dssp HHHHHHHT----CTTCCEEEEEEEEEEEESHHHH---HHHHHHHTTTC-----CCSCEEEEEEEECHHHHHHHTT----T
T ss_pred HHHHHHHc----CCCCCEEEEECCCCCCCHHHHH---HHHHHHHHhhC-----CCCcEEEEccCCCHHHHHHHHH----h
Confidence 99999998 9999999999999999999999 99999988764 4799999988899999999999 7
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 395 IGLPIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 395 ~Gip~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+|||+| +||++|+++++++++.+
T Consensus 355 ~gip~~-----~~~e~Aa~~~~~l~~~a 377 (397)
T 3ufx_B 355 KPVYMY-----PTSIEAAKVTVAMKGGA 377 (397)
T ss_dssp SSEEEC-----SSHHHHHHHHHHSCCSC
T ss_pred CCCccc-----CCHHHHHHHHHHHHHHh
Confidence 899887 89999999999987653
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.4e-34 Score=269.76 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=175.6
Q ss_pred CCCCCCCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEe-CCH
Q 014512 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALN-LDL 78 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~-~s~ 78 (423)
++|+.|+|+++|++|++| |||+| ++.++++ .+++.+++.++| +|+||||+.. ++|||+.|||.++ .|+
T Consensus 15 ~~~~~l~k~~~k~ll~~~-----GIp~p--~~~~~~~--~~ea~~~a~~lg-~PvvvKp~~~~~~~r~~~gGv~~~v~~~ 84 (238)
T 1wr2_A 15 QGRTAMVEYEAKQVLKAY-----GLPVP--EEKLAKT--LDEALEYAKEIG-YPVVLKLMSPQILHKSDAKVVMLNIKNE 84 (238)
T ss_dssp TTCCEECHHHHHHHHHTT-----TCCCC--CCEEESS--HHHHHHHHHHHC-SSEEEEEECTTCCCHHHHTCEEEEECSH
T ss_pred cCcCCCCHHHHHHHHHHc-----CcCCC--CeEEeCC--HHHHHHHHHHhC-CCEEEEEccCCCCcCCccCCEEEeCCCH
Confidence 467889999999999999 99999 7788876 588888888998 7999999998 8999999999994 899
Q ss_pred HHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC-CCeeeeecCCCcccccccceeEEEecCCccC
Q 014512 79 AQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL-GCSVSFSECGGIEIEENWDKVKTIFVPTGAC 157 (423)
Q Consensus 79 eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~-~p~il~s~~GGv~iE~~~d~~~~lpi~~~~~ 157 (423)
+|+.++++++++.... +.+...+.+++||+|+++++|+|++++.|+. +|++++| .||+++|...|....+ +|
T Consensus 85 ~el~~a~~~~~~~~~~-~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~-~Gg~~iE~~~d~~~~~--~P--- 157 (238)
T 1wr2_A 85 EELKKKWEEIHENAKK-YRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFG-LGGIFVEILKDVTFRL--VP--- 157 (238)
T ss_dssp HHHHHHHHHHHHHHHH-HCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEE-ECSTTHHHHCCCEEEE--SS---
T ss_pred HHHHHHHHHHHHhhhh-hCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEe-cCCceeeeecceeeec--CC---
Confidence 9999999999876543 2233456889999999989999999999995 7899998 9999999988876555 34
Q ss_pred CCHhhHHHHHh---------cCCh---hhHHHHHHHHHHHHHHhhccC--ccEeeeeceee-cCC-ceEEEeeeeeeccc
Q 014512 158 LASETSAPLVA---------TLPL---EIRGEIQEFIKSVFTLFQDLD--FTFLEMNPFTL-VDR-KPYPLDMRGELDDT 221 (423)
Q Consensus 158 l~~~~a~~l~~---------g~~~---~~~~~l~~~l~~L~~l~~~~d--~~~lEINPL~v-~~g-~~~alDaki~idd~ 221 (423)
+++..++++.. |+++ .|+++++++|.+||++|.+.+ +.++|||||++ .+| +++|+||++++|||
T Consensus 158 l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~~~~~~~ 237 (238)
T 1wr2_A 158 ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237 (238)
T ss_dssp CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEEEEeCCC
Confidence 67788888753 4444 789999999999999999886 99999999999 776 79999999999997
Q ss_pred h
Q 014512 222 A 222 (423)
Q Consensus 222 A 222 (423)
.
T Consensus 238 ~ 238 (238)
T 1wr2_A 238 D 238 (238)
T ss_dssp -
T ss_pred C
Confidence 3
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.85 E-value=6.4e-21 Score=197.72 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=129.1
Q ss_pred chhcccccccccccCCCCCCCCCCcccccccccchhhhccCCceEecC--CCcEEEEEcCCcHHHHHHHHhhccCCCCC-
Q 014512 221 TAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNP--KGRIWTMVAGGGASVIYADTVGDLGYASE- 297 (423)
Q Consensus 221 ~A~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l--~g~I~~i~nG~G~~~~~~D~l~~~g~gg~- 297 (423)
+|.|||.... .. .++.|. ......++| .+ ++||+||+||||++|+++|++..+ |++
T Consensus 262 ~AafRqaGv~-~v---------~~~~El--------~~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~--Gl~l 320 (457)
T 2csu_A 262 EAAFKQSGVL-VA---------NTIDEM--------LSMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKR--GLKL 320 (457)
T ss_dssp HHHHHHTTCE-EE---------SSHHHH--------HHHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTT--TCEE
T ss_pred HHHHHhCCCe-EE---------CCHHHH--------HHHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHc--CCCC
Confidence 7889998733 22 222332 223334555 55 899999999999999999999985 777
Q ss_pred --------------------CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe-c---CCCcchHHHHhhHHH
Q 014512 298 --------------------LGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-G---GGIANFTDVAATFNG 353 (423)
Q Consensus 298 --------------------paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~---ggi~~~~~vaa~~~g 353 (423)
++||+|++|+++++.|.++++++++ ||+++++|+++ + ||+. |++++ ++
T Consensus 321 ~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~----dp~vd~vlv~~~~~~~Gg~~-~~~~a---~~ 392 (457)
T 2csu_A 321 ATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ----DPNVDMLIAICVVPTFAGMT-LTEHA---EG 392 (457)
T ss_dssp CCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH----STTCSEEEEEEECCCSTTCC-SSHHH---HH
T ss_pred CCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhc----CCCCCEEEEEccccccccCC-chhHH---HH
Confidence 6899999999999999999999999 99999999999 3 3354 77777 99
Q ss_pred HHHHHHHhhhhhhccceeEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 354 IIQALKEKESKLKAARMHLYV-RRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 354 ii~a~~~~~~~~~~~~~pivv-rl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+++++++.. .++|+++ |++|++.++++++|+ ++|+|+| ++|++|++++..+++
T Consensus 393 i~~al~~~~-----~~kPvvv~~~~g~~~~~~~~~L~----~~Gip~~-----~spe~Av~al~~l~~ 446 (457)
T 2csu_A 393 IIRAVKEVN-----NEKPVLAMFMAGYVSEKAKELLE----KNGIPTY-----ERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHHHHC-----CCCCEEEEEECTTTTHHHHHHHH----TTTCCEE-----SSHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCCEEEEeCCCcchHHHHHHHH----hCCCCcc-----CCHHHHHHHHHHHHH
Confidence 999998863 3588777 799999999999999 7899998 899999999998876
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.26 E-value=1.9e-11 Score=126.81 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCC-----------------C----------CCceeeccCCCCHHHHHHHHHHHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYAS-----------------E----------LGNYAEYSGAPNEGEVLQYARVVI 321 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg-----------------~----------paN~lD~gG~a~~~~~~~a~~~ll 321 (423)
+.||++++||||++.++.|++.. |.+- + .+||+|+. +++.|.++++.++
T Consensus 249 G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l 324 (480)
T 3dmy_A 249 SGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLG 324 (480)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHh
Confidence 57799999999999999999876 3211 1 25788876 7889999999999
Q ss_pred hhhccCCCCcEEEE--Ee-cCCCcch-HHHHhhHHHHHHHHHHhhhhhhcccee--EEEEeCCCC-H----HHHHHHHHh
Q 014512 322 DCATADPDGRKRAL--VI-GGGIANF-TDVAATFNGIIQALKEKESKLKAARMH--LYVRRGGPN-Y----QRGLAKMRA 390 (423)
Q Consensus 322 ~~~~~~~~~~~ilv--~~-~ggi~~~-~~vaa~~~gii~a~~~~~~~~~~~~~p--ivvrl~G~~-~----~~a~~~l~~ 390 (423)
+ ||+++++++ .+ +++.+++ +++| +.|+++.+... .++| ++++++|+. . ++++++|+
T Consensus 325 ~----D~~vd~vlv~~v~~~~~~~d~~~~~a---~ai~~~~~~~~-----~~kp~v~v~~~~g~~~~~~~~~~~~~~L~- 391 (480)
T 3dmy_A 325 A----KPQVRVLLLDVVIGFGATADPAASLV---SAWQKACAARL-----DNQPLYAIATVTGTERDPQCRSQQIATLE- 391 (480)
T ss_dssp G----CTTEEEEEEEEECSTTSCSCHHHHHH---HHHHHHHHTSC-----TTSCCEEEEEEESCTTSTTCHHHHHHHHH-
T ss_pred c----CCCCCEEEEEeecCCCCCCChHHHHH---HHHHHHHHhcc-----CCCCeEEEEEecCcccchhhHHHHHHHHH-
Confidence 8 999999888 34 6777775 7777 88888755431 1466 556688874 2 35678888
Q ss_pred hhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 391 LAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 391 ~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++|||+| .||++||+++..+++.
T Consensus 392 ---~aGIp~f-----~spe~Av~a~~~l~~~ 414 (480)
T 3dmy_A 392 ---DAGIAVV-----SSLPEATLLAAALIHP 414 (480)
T ss_dssp ---HTTCEEC-----SSHHHHHHHHHHHTSC
T ss_pred ---hCCCccc-----CCHHHHHHHHHHHHhc
Confidence 7999998 8999999999988753
No 9
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.80 E-value=1.3e-07 Score=95.95 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+++ .+++.+++++++ +|+||||....++| ||.++.|.+|+.++++
T Consensus 106 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~e~~~~~~~~g-~PvvvKp~~~~gg~----Gv~~v~~~~el~~a~~ 171 (412)
T 1vkz_A 106 SKVYAKRFMKKY-----GIRTA--RFEVAET--PEELREKIKKFS-PPYVIKADGLARGK----GVLILDSKEETIEKGS 171 (412)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHTTSC-SSEEEEESSCCSSC----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CEEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 456789999999 99999 7777776 588888888887 79999999877666 8999999999999998
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... .+. ...++||++++ +.|+.+.+..|..
T Consensus 172 ~~~~~~~~-~g~---~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 172 KLIIGELI-KGV---KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp HHHHTSSS-TTC---CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhccc-cCC---CCeEEEEECCc-CcEEEEEEEECCC
Confidence 88643100 121 12699999999 8999999998764
No 10
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.78 E-value=1.2e-07 Score=92.75 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhh----cccCCCcEEEeeccccCcccccCeeEEeCCHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKE----PWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a----~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (423)
+.+..|++|+++ |||+| ++.++++. +++.+.+ .+++ +|+||||....+++ ||.+..|.+|+.
T Consensus 107 dK~~~k~~l~~~-----Gip~p--~~~~~~~~--~~~~~~~~~~~~~~g-~PvvvKP~~~~~s~----Gv~~v~~~~el~ 172 (317)
T 4eg0_A 107 DKFRTKLVWQQT-----GVPTP--PFETVMRG--DDYAARATDIVAKLG-LPLFVKPASEGSSV----AVLKVKTADALP 172 (317)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEEETT--SCHHHHHHHHHHHHC-SCEEEEECC---------CCEEECSGGGHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEECc--hhHHHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHH
Confidence 457789999999 99999 88888764 4555555 6787 79999998876555 778888999998
Q ss_pred HHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 83 TFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
++.++.... -..++||++++.++|+.+++..|+..+++...
T Consensus 173 ~a~~~~~~~----------~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~ 213 (317)
T 4eg0_A 173 AALSEAATH----------DKIVIVEKSIEGGGEYTACIAGDLDLPLIKIV 213 (317)
T ss_dssp HHHHHHTTT----------CSEEEEEECCCSSEEEEEEEETTCCCCCEEEE
T ss_pred HHHHHHHhC----------CCeEEEEcCCCCCcEEEEEEECCcccceEEEe
Confidence 888775421 24699999999789999999988766665544
No 11
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1e-09 Score=89.85 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
.+.+..|++|+++ |||+| ++. .+.+ .+++.+++++++ +|+|+||....+++ ||.+..|.+++.+
T Consensus 7 ~dK~~~~~~l~~~-----gip~p--~~~~~~~~~--~~~~~~~~~~~~-~P~vvKp~~~~~~~----gv~~v~~~~el~~ 72 (108)
T 2cqy_A 7 GDKIESKLLAKKA-----EVNTI--PGFDGVVKD--AEEAVRIAREIG-YPVMIKASAGGGGK----GMRIAWDDEETRD 72 (108)
T ss_dssp CCCCCSTTCCCSS-----CCCCC--SCCCSCBSS--HHHHHHHHHHHC-SSEEEEETTSCCTT----TCEEESSHHHHHH
T ss_pred cCHHHHHHHHHHc-----CCCCC--CCcccccCC--HHHHHHHHHhcC-CCEEEEECCCCCCc----cEEEeCCHHHHHH
Confidence 4455678888888 99999 655 5555 588888888887 89999999765555 7888899999999
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEE
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNI 121 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi 121 (423)
++++++.......+ -..++||+|++..+|+.+++
T Consensus 73 ~~~~~~~~~~~~~~----~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 73 GFRLSSQEAASSFG----DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp HHHHHHHHHHHHTS----SCCEEEEECCSSSSCCCSCC
T ss_pred HHHHHHHHHHhhcC----CCcEEEeeccCCCcEEEEEe
Confidence 98888643211011 14699999999767887654
No 12
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.75 E-value=1.2e-07 Score=97.11 Aligned_cols=109 Identities=9% Similarity=0.125 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
+-+..|++|+++ |||+| ++. .+.+ .+++.++++++| +|+||||..-.|+| ||.+..|++|+.++
T Consensus 119 dK~~~~~~l~~~-----Gip~p--~~~~~~~~~--~~e~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 184 (446)
T 3ouz_A 119 DKSKAKQVMQRA-----GVPVI--PGSDGALAG--AEAAKKLAKEIG-YPVILKAAAGGGGR----GMRVVENEKDLEKA 184 (446)
T ss_dssp SHHHHHHHHHHT-----TCCBC--SBCSSSCCS--HHHHHHHHHHHC-SSEEEEETTCCTTC----SEEEECSGGGHHHH
T ss_pred CHHHHHHHHHHc-----CCCcC--CCcccCCCC--HHHHHHHHHHhC-CCEEEEECCCCCCC----CEEEECCHHHHHHH
Confidence 346788999999 99999 654 4544 688888888998 89999999766666 89999999999988
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
++++........+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 185 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~ 229 (446)
T 3ouz_A 185 YWSAESEAMTAFG----DGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVG 229 (446)
T ss_dssp HHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHhcC----CCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 8887643221111 13589999999779999999999887766554
No 13
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.74 E-value=1.8e-07 Score=94.59 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHH----HHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFD----ELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~----ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (423)
.-+..|++|+++ |||+| ++..+++ .+ ++.++++++| +|+||||....+++ ||.++.|++|+.
T Consensus 159 DK~~~k~~l~~~-----GIp~p--~~~~~~~--~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----Gv~~v~~~~el~ 224 (386)
T 3e5n_A 159 DKDMAKRVLRDA-----RLAVA--PFVCFDR--HTAAHADVDTLIAQLG-LPLFVKPANQGSSV----GVSQVRTADAFA 224 (386)
T ss_dssp BHHHHHHHHHHT-----TCCBC--CEEEEEH--HHHTTCCHHHHHHHHC-SSEEEEESBSCSST----TCEEECSGGGHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEeC--cccchhhHHHHHHhcC-CCEEEEECCCCcCC----CEEEECCHHHHH
Confidence 356789999999 99999 7788765 24 5666777887 89999999875555 788888999999
Q ss_pred HHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCee
Q 014512 83 TFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSV 130 (423)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~i 130 (423)
++.++++.. -..++||++++ ++|+.+++..|+..+++
T Consensus 225 ~a~~~a~~~----------~~~vlVEe~I~-G~E~~v~vl~~~~~~~~ 261 (386)
T 3e5n_A 225 AALALALAY----------DHKVLVEAAVA-GREIECAVLGNAVPHAS 261 (386)
T ss_dssp HHHHHHTTT----------CSEEEEEECCC-SEEEEEEEECSSSCEEE
T ss_pred HHHHHHHhC----------CCcEEEEcCCC-CeEEEEEEEeCCCceEE
Confidence 888776521 14599999999 69999999988763333
No 14
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.67 E-value=1.1e-07 Score=94.69 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeecccc-CcccccCeeEEeCCHHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLF-GKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.+.+..|++|+++ |||+| ++..+++ .+++.++++++| +|+|+||.... ++| ||.+..|.+|+.++
T Consensus 95 ~dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~ 160 (369)
T 3aw8_A 95 QDRLREKTFFQGL-----GVPTP--PFHPVDG--PEDLEEGLKRVG-LPALLKTRRGGYDGK----GQALVRTEEEALEA 160 (369)
T ss_dssp TCHHHHHHHHHHH-----TCCCC--CEEEESS--HHHHHHHHTTTC-SSEEEEECCC----------EEEECSHHHHHHH
T ss_pred cCHHHHHHHHHHC-----CCCCC--CceeeCC--HHHHHHHHHHcC-CCEEEEEcCCCCCcc----eEEEECCHHHHHHH
Confidence 3567889999999 99999 7788876 588888888887 79999999876 666 89999999998877
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
++++- -..++||++++.++|+.+.+..|+.+.++.++
T Consensus 161 ~~~~~------------~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 197 (369)
T 3aw8_A 161 LKALG------------GRGLILEGFVPFDREVSLLAVRGRTGEVAFYP 197 (369)
T ss_dssp HTTTC------------SSSEEEEECCCCSEEEEEEEEECTTSCEEECC
T ss_pred HHhcC------------CCcEEEEEcCCCCEEEEEEEEECCCCCEEEEC
Confidence 76541 13489999999889999999999877655543
No 15
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.67 E-value=3.6e-07 Score=93.37 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcc----cCCCcEEEeec-cccCcccccCeeEEeCCHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPW----LTSCKLVVKPD-MLFGKRGKSGLVALNLDLAQA 81 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~----lg~~pvVvKaq-v~~g~Rgk~GgV~l~~s~eea 81 (423)
.-+..|++|+++ |||+| ++..+++ .+++.+++++ + +|+||||. .-.+|| ||.+..|++|+
T Consensus 133 dK~~~k~~l~~~-----Gip~p--~~~~v~~--~~e~~~~~~~~~~~~--~P~VvKp~~~g~~G~----Gv~~v~~~~el 197 (419)
T 4e4t_A 133 DRIAEKRFIEAS-----GVPVA--PHVVIES--AAALAALDDAALDAV--LPGILKTARLGYDGK----GQVRVSTAREA 197 (419)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEECS--HHHHHTSCHHHHHTT--CSEEEEESSSCCTTT----TEEEECSHHHH
T ss_pred CHHHHHHHHHHc-----CcCCC--CeEEECC--HHHHHHHHHhhcccc--CCEEEEecCCCCCCC----ceEEECCHHHH
Confidence 346779999999 99999 8888876 5888887777 7 69999996 444445 89999999999
Q ss_pred HHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 82 ATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
.++++.+ + + ..++||++++.++|+.+.+..|..+.+..+.
T Consensus 198 ~~a~~~~-~------~-----~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~ 237 (419)
T 4e4t_A 198 RDAHAAL-G------G-----VPCVLEKRLPLKYEVSALIARGADGRSAAFP 237 (419)
T ss_dssp HHHHHHT-T------T-----CCEEEEECCCEEEEEEEEEEECTTSCEEECC
T ss_pred HHHHHhc-C------C-----CcEEEeecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 8887654 1 1 3489999999889999999999887665543
No 16
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.65 E-value=2.9e-07 Score=97.08 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEE-----------------------------ecCCCHHHHHHhhcccCCCcEE
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQV-----------------------------IESTNFDELAQKEPWLTSCKLV 56 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~-----------------------------~~~~~~~ea~~~a~~lg~~pvV 56 (423)
-..+.+|++|+++ |||+| ++.. +.+ .+++.++++++| +|+|
T Consensus 163 ~DK~~~k~ll~~~-----GVPvp--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s--~~ea~~~a~~ig-yPvV 232 (540)
T 3glk_A 163 GDKIASTVVAQTL-----QVPTL--PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKD--VDEGLEAAERIG-FPLM 232 (540)
T ss_dssp -CHHHHHHHHHHT-----TCCBC--CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCS--HHHHHHHHHHHC-SSEE
T ss_pred CCHHHHHHHHHHc-----CCCCC--CcccccccccccccccccccccccccccccccCcCC--HHHHHHHHHhcC-CcEE
Confidence 3567899999999 99999 5443 333 688888889998 8999
Q ss_pred EeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 57 VKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 57 vKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
|||....||| ||.+..|++|+.++++++..... -..++||++++..+|+.+.+..|+.+.++.++
T Consensus 233 VKp~~ggGG~----Gv~iv~~~~eL~~a~~~~~~~~~--------~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~ 297 (540)
T 3glk_A 233 IKASEGGGGK----GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 297 (540)
T ss_dssp EEETTCC--------EEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCSSEEEEEEEEEECTTSCEEEEE
T ss_pred EEECCCCCCC----CEEEECCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 9999877766 88999999999988887754211 13589999999669999999999887776653
No 17
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.64 E-value=4.1e-07 Score=96.74 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEE-----------------------------ecCCCHHHHHHhhcccCCCcEEE
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQV-----------------------------IESTNFDELAQKEPWLTSCKLVV 57 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~-----------------------------~~~~~~~ea~~~a~~lg~~pvVv 57 (423)
.-+.+|++|+++ |||+| ++.. +.+ .+++.++++++| +|+||
T Consensus 180 DK~~ak~ll~~a-----GVPvp--p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s--~eea~~~a~~iG-yPvVV 249 (587)
T 3jrx_A 180 DKIASTVVAQTL-----QVPTL--PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKD--VDEGLEAAERIG-FPLMI 249 (587)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBTTTTCCCCC------CCCCCCCCHHHHHTTSCCS--HHHHHHHHHHHC-SSEEE
T ss_pred CHHHHHHHHHHc-----CCCCC--CeecccccccccccccccccccccchhhccccccCC--HHHHHHHHHhcC-CeEEE
Confidence 457789999999 99999 5443 333 688888889998 89999
Q ss_pred eeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 58 KPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 58 Kaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
||....||| ||.++.|.+|+.++++++..... -..++||++++..+|+.+.+..|..+.++.++
T Consensus 250 Kp~~GgGGk----Gv~iV~s~eEL~~a~~~a~~~~~--------~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~ 313 (587)
T 3jrx_A 250 KASEGGGGK----GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 313 (587)
T ss_dssp EETTCCSSS----SEEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCCSCEEEEEEEEECSSSCEEEEE
T ss_pred EeCCCCCCC----CeEEeCCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 999877777 89999999999988887754211 13589999999779999999999887766553
No 18
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.64 E-value=8.3e-07 Score=88.77 Aligned_cols=98 Identities=21% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCC--HHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTN--FDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~--~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
...+..|++|+++ |||+| ++..+++.+ .+++.++++++| +|+||||....++ -||.+..|++|+.+
T Consensus 139 ~DK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss----~Gv~~v~~~~el~~ 206 (364)
T 3i12_A 139 MDKDVAKRLLRDA-----GLNIA--PFITLTRTNRHAFSFAEVESRLG-LPLFVKPANQGSS----VGVSKVANEAQYQQ 206 (364)
T ss_dssp HCHHHHHHHHHHT-----TCCBC--CEEEEETTTGGGCCHHHHHHHHC-SSEEEEETTCCTT----TTCEEESSHHHHHH
T ss_pred HCHHHHHHHHHHC-----CCCCC--CEEEEEccccchhhHHHHHHhcC-CCEEEEECCCCCC----cCeEEeCCHHHHHH
Confidence 3567889999999 99999 788887642 116666777887 8999999865433 37888899999998
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+.++.+.. . ..++||++++ ++|+.+++..|+.
T Consensus 207 a~~~a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~~~~ 238 (364)
T 3i12_A 207 AVALAFEF-----D-----HKVVVEQGIK-GREIECAVLGNDN 238 (364)
T ss_dssp HHHHHHHH-----C-----SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHhc-----C-----CcEEEEcCcC-CeEEEEEEEeCCC
Confidence 88776531 1 4699999999 5999999998875
No 19
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.63 E-value=3.5e-07 Score=91.58 Aligned_cols=99 Identities=18% Similarity=0.050 Sum_probs=75.9
Q ss_pred HHHHHHH-HHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 9 YDSKRLL-KEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 9 ~eak~lL-~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
+..|++| +++ |||+| ++..+++ .+++.+.++++| +|+||||....++| ||.+..|.+|+.++.++
T Consensus 114 ~~~~~~l~~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~~ 179 (391)
T 1kjq_A 114 EGIRRLAAEEL-----QLPTS--TYRFADS--ESLFREAVADIG-YPCIVKPVMSSSGK----GQTFIRSAEQLAQAWKY 179 (391)
T ss_dssp HHHHHHHHTTS-----CCCBC--CEEEESS--HHHHHHHHHHHC-SSEEEEESCC---C----CCEEECSGGGHHHHHHH
T ss_pred HHHHHHHHHhC-----CCCCC--CeeeeCC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHHH
Confidence 4567777 677 99999 7787776 578888888887 79999998766666 78888899999988888
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
+..... + .-..++||++++.+.|+.+.+..|..+
T Consensus 180 ~~~~~~---~---~~~~~lvEe~i~~g~E~sv~~~~~~~g 213 (391)
T 1kjq_A 180 AQQGGR---A---GAGRVIVEGVVKFDFEITLLTVSAVDG 213 (391)
T ss_dssp HHHHSG---G---GCCCEEEEECCCCSEEEEEEEEEETTE
T ss_pred HHhhcc---c---CCCCEEEEEecCCCeEEEEEEEEeCCC
Confidence 764321 1 124599999999889999999988665
No 20
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.63 E-value=2e-07 Score=95.44 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+.+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++++
T Consensus 107 dK~~~k~~l~~~-----GIptp--~~~~~~~--~~ea~~~~~~~g-~PvVvKp~~~~gg~----GV~iv~~~~el~~a~~ 172 (431)
T 3mjf_A 107 SKAFTKDFLARH-----NIPSA--EYQNFTD--VEAALAYVRQKG-APIVIKADGLAAGK----GVIVAMTQEEAETAVN 172 (431)
T ss_dssp CHHHHHHHHHHT-----TCSBC--CEEEESC--HHHHHHHHHHHC-SSEEEEESSSCTTC----SEEEECSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEeeCC--HHHHHHHHHHcC-CeEEEEECCCCCCC----cEEEeCCHHHHHHHHH
Confidence 456789999999 99999 7788876 688888888887 89999999887777 8999999999999999
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... +. .-..++||++++ +.|+.+.+..|..
T Consensus 173 ~~~~~~~~--g~--~~~~vlvEe~i~-G~E~sv~~~~dg~ 207 (431)
T 3mjf_A 173 DMLAGNAF--GD--AGHRIVVEEFLD-GEEASFIVMVDGE 207 (431)
T ss_dssp HHHTTHHH--HC--CCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHhhccc--cC--CCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence 98743111 11 114699999999 7999999998875
No 21
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.61 E-value=2.9e-07 Score=94.59 Aligned_cols=101 Identities=17% Similarity=0.029 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++++
T Consensus 123 dK~~~k~~l~~~-----GIp~p--~~~~~~~--~~ea~~~~~~~g-~PvVvKp~~~~gg~----GV~iv~~~eel~~a~~ 188 (442)
T 3lp8_A 123 SKGFTKELCMRY-----GIPTA--KYGYFVD--TNSAYKFIDKHK-LPLVVKADGLAQGK----GTVICHTHEEAYNAVD 188 (442)
T ss_dssp CHHHHHHHHHHH-----TCCBC--CEEEESS--HHHHHHHHHHSC-SSEEEEESSCCTTT----SEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEECC--HHHHHHHHHHcC-CcEEEeECCCCCCC----eEEEeCCHHHHHHHHH
Confidence 356789999999 99999 7888876 688888888887 89999999887777 8999999999999999
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 189 ~~~~~~~~--g--~~~~~vlvEe~i~-G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 189 AMLVHHKF--G--EAGCAIIIEEFLE-GKEISFFTLVDGS 223 (442)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHhhccc--C--CCCCeEEEEEeec-CcEEEEEEEECCC
Confidence 98743111 1 1124599999999 8999999998865
No 22
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.61 E-value=5.4e-07 Score=102.25 Aligned_cols=104 Identities=11% Similarity=0.178 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
.-+..|++|+++ |||+| ++..+++ .+++.++++++| +|+||||....||+ ||.++.|++|+.++++
T Consensus 128 DK~~~k~~l~~~-----Gipvp--~~~~v~~--~~ea~~~~~~ig-~PvVvKp~~~~Gg~----Gv~iv~~~eel~~~~~ 193 (1073)
T 1a9x_A 128 DRRRFDVAMKKI-----GLETA--RSGIAHT--MEEALAVAADVG-FPCIIRPSFTMGGS----GGGIAYNREEFEEICA 193 (1073)
T ss_dssp SHHHHHHHHHHT-----TCCCC--SEEEESS--HHHHHHHHHHHC-SSEEEEETTCCTTT----TCEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEECC--HHHHHHHHHHcC-CCEEEEECCCCCCC----ceEEeCCHHHHHHHHH
Confidence 346778999999 99999 8888877 588888888998 89999999877766 7888999999999888
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.+... ....++||++++..+|+.+.+..|+.+.++.+
T Consensus 194 ~~~~~~--------~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~ 231 (1073)
T 1a9x_A 194 RGLDLS--------PTKELLIDESLIGWKEYEMEVVRDKNDNCIIV 231 (1073)
T ss_dssp HHHHHC--------TTSCEEEEECCTTSEEEEEEEEECTTCCEEEE
T ss_pred HHHhhC--------CCCcEEEEEccCCCeEEEEEEEEeCCCCEEEE
Confidence 776421 12469999999966899999999988765544
No 23
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.59 E-value=6e-07 Score=91.90 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=81.4
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHH-HHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDEL-AQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea-~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
-+..|++|+++ |||+| ++. .+++ .+++ .+.+++++ +|+||||....|+| ||.+..|.+|+.++
T Consensus 116 K~~~k~~l~~~-----gip~p--~~~~~~~~~--~~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 181 (449)
T 2w70_A 116 KVSAIAAMKKA-----GVPCV--PGSDGPLGD--DMDKNRAIAKRIG-YPVIIKASGGGGGR----GMRVVRGDAELAQS 181 (449)
T ss_dssp HHHHHHHHHHH-----TCCBC--SBCSSCCCS--CHHHHHHHHHHHC-SSEEEEETTCCTTT----TCEEECSHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCcC--CCcccccCC--HHHHHHHHHHHhC-CcEEEEECCCCCCC----CEEEeCCHHHHHHH
Confidence 45689999999 99998 654 5555 4788 77777887 79999999887777 78889999999988
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
.++++.......+ -..++||++++..+|+.+.+..|..+.++.+
T Consensus 182 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~ 225 (449)
T 2w70_A 182 ISMTRAEAKAAFS----NDMVYMEKYLENPRHVEIQVLADGQGNAIYL 225 (449)
T ss_dssp HHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHhhcC----CCcEEEEeccCCCeEEEEEEEEcCCCCEEEE
Confidence 8877642110001 1358999999977899999999987765443
No 24
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.59 E-value=5.7e-07 Score=94.98 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEe------------------------cCCCHHHHHHhhcccCCCcEEEeeccc
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVI------------------------ESTNFDELAQKEPWLTSCKLVVKPDML 62 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~------------------------~~~~~~ea~~~a~~lg~~pvVvKaqv~ 62 (423)
+-+.+|++|+++ |||+| ++... .-.+.+++.++++++| +|+||||...
T Consensus 173 dK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g-~PvVvKp~~g 244 (554)
T 1w96_A 173 DKISSTIVAQSA-----KVPCI--PWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIG-FPVMIKASEG 244 (554)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHC-SSEEEEETTC
T ss_pred CHHHHHHHHHHC-----CCCcC--CccccccccccccccccccccccccccccCCCCHHHHHHHHHHcC-CCEEEEECCC
Confidence 456789999999 99999 44332 0022678888788887 8999999988
Q ss_pred cCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 63 FGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 63 ~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
.|+| ||.+..|++|+.++++++..... -..++||++++.++|+.+.+..|..+.++.
T Consensus 245 ~gg~----Gv~~v~~~~el~~a~~~~~~~~~--------~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~ 301 (554)
T 1w96_A 245 GGGK----GIRQVEREEDFIALYHQAANEIP--------GSPIFIMKLAGRARHLEVQLLADQYGTNIS 301 (554)
T ss_dssp CTTT----TEEEECSHHHHHHHHHHHHHHST--------TCCEEEEECCCSCEEEEEEEEECTTSCEEE
T ss_pred CCCc----eEEEECCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEE
Confidence 7777 89999999999988887764211 135899999997799999999998766543
No 25
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.57 E-value=9e-07 Score=89.80 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeecccc-CcccccCeeEEeCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLF-GKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~a 85 (423)
.-+..|++|+++ |||+| ++..+...+.+++.++++++| +|+||||.... +|| ||.+..|++|+.+++
T Consensus 123 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~g-~P~VvKp~~gg~~g~----Gv~~v~~~~el~~a~ 190 (403)
T 3k5i_A 123 NKFNQKEHLRKY-----GIPMA--EHRELVENTPAELAKVGEQLG-YPLMLKSKTMAYDGR----GNFRVNSQDDIPEAL 190 (403)
T ss_dssp SHHHHHHHHHTT-----TCCBC--CEEEESSCCHHHHHHHHHHHC-SSEEEEESSSCCTTT----TEEEECSTTSHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEcCCCHHHHHHHHHHhC-CCEEEEeCCCCcCCC----CEEEECCHHHHHHHH
Confidence 456788999999 99999 888887212688888888997 89999998653 555 899998999988877
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
+.+. + ..++||++++.++|+.+.+..|+.+
T Consensus 191 ~~~~-------~-----~~~lvEe~i~~~~E~sv~v~~~~~g 220 (403)
T 3k5i_A 191 EALK-------D-----RPLYAEKWAYFKMELAVIVVKTKDE 220 (403)
T ss_dssp HHTT-------T-----SCEEEEECCCEEEEEEEEEEECSSC
T ss_pred HhcC-------C-----CcEEEecCCCCCeEEEEEEEEcCCC
Confidence 6541 1 3489999999889999999999876
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.56 E-value=2.5e-06 Score=85.75 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeecccc-CcccccCeeEEeCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLF-GKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~a 85 (423)
.-+..|++|+++ |||+| ++..+++ .+++.++++++| +|+||||.... +|| ||.+..|++|+.+++
T Consensus 112 dK~~~k~~l~~~-----Gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~~ 177 (389)
T 3q2o_A 112 NRFTEKNAIEKA-----GLPVA--TYRLVQN--QEQLTEAIAELS-YPSVLKTTTGGYDGK----GQVVLRSEADVDEAR 177 (389)
T ss_dssp SHHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHC-SSEEEEESSCCSSSC----CEEEESSGGGHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CeEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCCC----CeEEECCHHHHHHHH
Confidence 456788999999 99999 8888877 588888888997 89999997653 234 788889999988877
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+.+.. ..++||++++...|+.+.+..|..+.+..+
T Consensus 178 ~~~~~------------~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~ 212 (389)
T 3q2o_A 178 KLANA------------AECILEKWVPFEKEVSVIVIRSVSGETKVF 212 (389)
T ss_dssp HHHHH------------SCEEEEECCCCSEEEEEEEEECTTCCEEEC
T ss_pred HhcCC------------CCEEEEecccCceEEEEEEEEcCCCCEEEe
Confidence 65421 248999999977999999999977654443
No 27
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.55 E-value=1.9e-06 Score=86.60 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHH----HHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDE----LAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~e----a~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~ 82 (423)
+-+..|++|+++ |||+| ++..+.+. ++ +.++++++| +|+||||....+++ ||.++.|.+|+.
T Consensus 135 DK~~~k~~l~~~-----Gip~p--~~~~~~~~--~~~~~~~~~~~~~~g-~PvvVKP~~~~~s~----Gv~~v~~~~el~ 200 (377)
T 1ehi_A 135 DKALTKELLTVN-----GIRNT--KYIVVDPE--SANNWSWDKIVAELG-NIVFVKAANQGSSV----GISRVTNAEEYT 200 (377)
T ss_dssp SHHHHHHHHHTT-----TCCCC--CEEEECTT--GGGGCCHHHHHHHHC-SCEEEEESSCCTTT----TEEEECSHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CEEEEecc--ccchHHHHHHHHhcC-CCEEEEeCCCCCCc----CEEEeCCHHHHH
Confidence 456789999999 99999 77887664 22 555566787 89999999876666 788899999999
Q ss_pred HHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 83 TFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 83 ~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
++.++.+.. . ..++||+++++.+|+.+++..|..
T Consensus 201 ~a~~~~~~~-----~-----~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 201 EALSDSFQY-----D-----YKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp HHHHHHTTT-----C-----SCEEEEECCCCSCEEEEEEEESSS
T ss_pred HHHHHHHhc-----C-----CcEEEEcCCCCCceEEEEEEcCCC
Confidence 888775421 1 358999999943899999998764
No 28
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.53 E-value=8.1e-07 Score=90.48 Aligned_cols=100 Identities=16% Similarity=0.001 Sum_probs=70.8
Q ss_pred HHHHHHH-HHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 9 YDSKRLL-KEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 9 ~eak~lL-~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
+..|++| +++ |||+| ++..+++ .+++.++++++| +|+||||....++| ||.+..|.+|+.++.++
T Consensus 122 ~~~k~~l~~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~~ 187 (433)
T 2dwc_A 122 ERLRETLVKEA-----KVPTS--RYMYATT--LDELYEACEKIG-YPCHTKAIMSSSGK----GSYFVKGPEDIPKAWEE 187 (433)
T ss_dssp HHHHHHHHHTS-----CCCCC--CEEEESS--HHHHHHHHHHHC-SSEEEEECCC----------EEECSGGGHHHHHHC
T ss_pred HHHHHHHHHhc-----CCCCC--CeeEeCC--HHHHHHHHHhcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHHH
Confidence 5578887 788 99999 7787776 578888888887 79999998766666 88888999999888877
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeC--CCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSER--LGC 128 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~--~~p 128 (423)
++.... + .-..++||++++.+.|+.+.+..|. .|.
T Consensus 188 ~~~~~~---~---~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~ 224 (433)
T 2dwc_A 188 AKTKAR---G---SAEKIIVEEHIDFDVEVTELAVRHFDENGE 224 (433)
T ss_dssp ---------------CCEEEEECCCCSEEEEECCEEEECTTSC
T ss_pred HHhhcc---c---CCCCEEEEccCCCCeeEEEEEEecccCCCC
Confidence 653211 1 1245899999998899999998875 553
No 29
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.52 E-value=1.6e-06 Score=87.30 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=73.1
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..|++|+++ |||+| ++..+++ .+++.+.++++| +|+||||....|+| ||.+..|++|+.+++++
T Consensus 110 K~~~~~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~~ 175 (403)
T 4dim_A 110 KYKMKEAFKKY-----NVNTA--RHFVVRN--ENELKNALENLK-LPVIVKATDLQGSK----GIYIAKKEEEAIDGFNE 175 (403)
T ss_dssp HHHHHHHHHHH-----TCCCC--CEECCCS--HHHHHHHHHTSC-SSEEEECSCC---------CEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCCC--CEEEeCC--HHHHHHHHhcCC-CCEEEEECCCCCCC----CEEEECCHHHHHHHHHH
Confidence 45678999999 99999 7777766 688888888997 89999998877766 88999999999998888
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
+..... -..++||++++ +.|+.+.+..+
T Consensus 176 ~~~~~~--------~~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 176 TMNLTK--------RDYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp HHHHCS--------SSCCEEEECCC-SEEEEEEEEEE
T ss_pred HHhcCc--------CCcEEEEEccC-CcEEEEEEEEE
Confidence 764311 13589999999 68999988864
No 30
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.48 E-value=1.9e-06 Score=86.68 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCH-H-HHHHhhcccCCCc-EEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNF-D-ELAQKEPWLTSCK-LVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~-~-ea~~~a~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
.-+..|++|+++ |||+| ++..+++.+. + .+..+.+++| +| +||||....+++ ||.++.|.+|..+
T Consensus 140 DK~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~~~~~lg-~P~vvVKP~~ggss~----Gv~~v~~~~eL~~ 207 (372)
T 3tqt_A 140 EKDLTKTVLRAG-----GIPVV--DWHTLSPRDATEGVYQRLLDRWG-TSELFVKAVSLGSSV----ATLPVKTETEFTK 207 (372)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CCEEECTTSCCTTHHHHHHHHC----CEEEEESSCCSGG----GEEEECSHHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEechhhhhhHHHHHHHhcC-CCeEEEEECCCCCCC----CEEEECCHHHHHH
Confidence 346789999999 99999 7777766421 1 1335566787 89 999998765555 7888999999998
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeC
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSER 125 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~ 125 (423)
+.++.+.. . ..++||++++ ++|+.+++..|+
T Consensus 208 a~~~a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 208 AVKEVFRY-----D-----DRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp HHHHHTTT-----C-----SCEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHhc-----C-----CCEEEECCCC-CEEEEEEEEeCC
Confidence 87765421 1 3589999999 799999999886
No 31
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.47 E-value=1.2e-06 Score=84.72 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHH-hhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQ-KEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~-~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
+-+..|++|+++ |||+| ++.++++. +++.. .+.+++ +|+||||....+++ ||.+..|.+++.++.
T Consensus 97 dK~~~~~~l~~~-----Gip~p--~~~~~~~~--~~~~~~~~~~~~-~P~vvKP~~~~~s~----Gv~~v~~~~el~~~~ 162 (307)
T 3r5x_A 97 DKNISKKILRYE-----GIETP--DWIELTKM--EDLNFDELDKLG-FPLVVKPNSGGSSV----GVKIVYDKDELISML 162 (307)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEEESS--SCCCHHHHHHHC-SSEEEEECC----C----CCEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEeCh--hhhhHHHHHhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHH
Confidence 456788999999 99999 87888764 33332 455676 79999998876656 788889999999888
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEE
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIV 122 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~ 122 (423)
++++.. . ..++||++++ ++|+.+.+.
T Consensus 163 ~~~~~~-----~-----~~~lvee~i~-G~e~~v~v~ 188 (307)
T 3r5x_A 163 ETVFEW-----D-----SEVVIEKYIK-GEEITCSIF 188 (307)
T ss_dssp HHHHHH-----C-----SEEEEEECCC-SEEEEEEEE
T ss_pred HHHHhc-----C-----CCEEEECCcC-CEEEEEEEE
Confidence 877531 1 4689999999 699999985
No 32
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.46 E-value=1.9e-06 Score=97.78 Aligned_cols=98 Identities=11% Similarity=0.207 Sum_probs=71.9
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..+++|+++ |||+| ++..+++ .+++.++++++| +|+||||....||| ||.+..|.+++.++.++
T Consensus 675 K~~~~~ll~~~-----GIp~P--~~~~~~s--~eea~~~~~~ig-~PvvVKP~~~~gG~----Gv~iv~~~~el~~~~~~ 740 (1073)
T 1a9x_A 675 RERFQHAVERL-----KLKQP--ANATVTA--IEMAVEKAKEIG-YPLVVRASYVLGGR----AMEIVYDEADLRRYFQT 740 (1073)
T ss_dssp HHHHHHHHHHH-----TCCCC--CEEECCS--HHHHHHHHHHHC-SSEEEEC-----------CEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CcCCC--CceEECC--HHHHHHHHHHcC-CCEEEEECCCCCCC----CeEEECCHHHHHHHHHH
Confidence 35678899999 99999 8888877 688998888997 89999999877777 89999999999988877
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
+.... .-..++||++++..+|+.+.+..|..+
T Consensus 741 a~~~~--------~~~~vlvEefI~g~~E~~V~~l~d~~~ 772 (1073)
T 1a9x_A 741 AVSVS--------NDAPVLLDHFLDDAVEVDVDAICDGEM 772 (1073)
T ss_dssp CC----------------EEEBCCTTCEEEEEEEEECSSC
T ss_pred HHhhC--------CCCcEEEEEccCCCcEEEEEEEEECCe
Confidence 64211 124599999999767999999998754
No 33
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.45 E-value=3.2e-07 Score=99.32 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
-+-+.+|++|+++ |||+| ++. .+.+ .+++.++++++| ||+||||..-.|+| ||++..|++|+.+
T Consensus 114 ~dK~~~k~~l~~~-----GVPvp--p~~~~~~~s--~~e~~~~a~~ig-yPvVvKp~~ggggk----Gv~iv~~~~el~~ 179 (681)
T 3n6r_A 114 GDKITSKKIAQEA-----NVSTV--PGYMGLIED--ADEAVKISNQIG-YPVMIKASAGGGGK----GMRIAWNDQEARE 179 (681)
T ss_dssp TSHHHHHHHHHTT-----TCCCC--CC-----------------------------------------------------
T ss_pred CCHHHHHHHHHHc-----CcCcC--CccccCcCC--HHHHHHHHHhcC-CcEEEEECCCCCCC----CEEEECCHHHHHH
Confidence 3567889999999 99999 543 4444 478888888997 89999998766666 8888999999988
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
+++.+........+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 180 a~~~~~~ea~~~fg----~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 180 GFQSSKNEAANSFG----DDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp ---------------------------CCSCEEEEEEEECCSSSCCEEEE
T ss_pred HHHHHHHHHHHhCC----CCcEEEEeccCCCcEEEEEEEEeCCCCEEEEe
Confidence 88776543221001 25689999999779999999999887766654
No 34
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.42 E-value=3.4e-07 Score=90.99 Aligned_cols=101 Identities=26% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeecccc-CcccccCeeEEeCCHHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLF-GKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.+.+..|++|+++ |||+| ++..++ . +++.+.+++++ +|+|+||.... +++ ||.+..|.+|+.++
T Consensus 91 ~dK~~~~~~l~~~-----gip~p--~~~~~~-~--~~~~~~~~~~~-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~ 155 (365)
T 2z04_A 91 KSRIREKLFLKKH-----GFPVP--EFLVIK-R--DEIIDALKSFK-LPVVIKAEKLGYDGK----GQYRIKKLEDANQV 155 (365)
T ss_dssp TCHHHHHHHHHTT-----TCCCC--CEEEC------------------CEEEECC-------------------------
T ss_pred hCHHHHHHHHHHc-----CCCCC--CEEEEc-H--HHHHHHHHhcC-CCEEEEEcCCCcCCC----CeEEECCHHHHHHH
Confidence 3567789999999 99999 777765 3 67777777787 79999999876 666 78888899998888
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++++++. ..++||++++.+.|+.+.+..|++|.++.+
T Consensus 156 ~~~~~~~-----------~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~ 192 (365)
T 2z04_A 156 VKNHDKE-----------ESFIIEEFVKFEAEISCIGVRDREGKTYFY 192 (365)
T ss_dssp --------------------CEEEECCCCSEEEEEEEEECTTCCEEEC
T ss_pred HHHhccC-----------CCEEEEccCCCCEEEEEEEEECCCCCEEEE
Confidence 7766521 358999999988999999999987665444
No 35
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.42 E-value=3.5e-07 Score=99.89 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=83.4
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhh-cccCCCcEEEeeccccCcccccCeeEEeC---CHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKE-PWLTSCKLVVKPDMLFGKRGKSGLVALNL---DLAQAAT 83 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a-~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~---s~eea~~ 83 (423)
-..+|++|+++ |||+| ++.++.+. +++.+++ +.+| +|+||||....+|+ ||.++. |.+++.+
T Consensus 485 K~~tk~lL~~~-----GIPvP--~~~~~~~~--~ea~~~~~~~~g-~PvVVKP~~G~~G~----GV~iv~~~~s~eel~~ 550 (750)
T 3ln6_A 485 KVVTKKILDEK-----HFPTP--FGDEFTDR--KEALNYFSQIQD-KPIVVKPKSTNFGL----GISIFKTSANLASYEK 550 (750)
T ss_dssp SHHHHHHHHHT-----TCCCC--CCCCEETT--TTHHHHHHHSSS-SCEEEEETTCCSSS----SCEEESSCCCHHHHHH
T ss_pred HHHHHHHHHHC-----CcCCC--CEEEECCH--HHHHHHHHHhcC-CcEEEEeCCCCCCC----CEEEEeCCCCHHHHHH
Confidence 35689999999 99999 77777764 6776666 5676 89999997654444 888876 8999999
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCe-----eeeecCCCcccccc
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCS-----VSFSECGGIEIEEN 143 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~-----il~s~~GGv~iE~~ 143 (423)
+++.++.. ...++||++++ ++|+.+.+..|+.-++ ..+++-|+..|+++
T Consensus 551 a~~~~~~~----------~~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eL 604 (750)
T 3ln6_A 551 AIDIAFTE----------DSAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQL 604 (750)
T ss_dssp HHHHHHHH----------CSEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHH
T ss_pred HHHHHHhh----------CCcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEecCCccCHHHH
Confidence 98877531 14699999999 7999999986654322 12345899888874
No 36
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.40 E-value=3.6e-07 Score=98.80 Aligned_cols=109 Identities=11% Similarity=0.160 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEE--ecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQV--IESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~--~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.-+.+|++|+++ |||+| ++.. +.+ .+++.++++++| ||+||||..-.|+| ||++..|++|+.++
T Consensus 141 DK~~~k~~l~~~-----GVpvp--p~~~~~~~s--~~e~~~~a~~ig-yPvvvKp~~G~Gg~----Gv~iv~~~~el~~a 206 (675)
T 3u9t_A 141 SKSAAKALMEEA-----GVPLV--PGYHGEAQD--LETFRREAGRIG-YPVLLKAAAGGGGK----GMKVVEREAELAEA 206 (675)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CCCCSCCCC--TTHHHHHHHHSC-SSBCCBCCC----------CCCBCCTTTHHHH
T ss_pred hHHHHHHHHHHc-----CcCcC--CccccCCCC--HHHHHHHHHhCC-CcEEEEECCCCCCc----cEEEECCHHHHHHH
Confidence 457789999999 99999 5543 334 578888899998 89999998776666 78888999998887
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
++.+........+ -..++||++++..+|+.+.+..|..+.++.++
T Consensus 207 ~~~~~~ea~~~fg----~~~vlvEeyI~g~reiev~v~~d~~G~vv~l~ 251 (675)
T 3u9t_A 207 LSSAQREAKAAFG----DARMLVEKYLLKPRHVEIQVFADRHGHCLYLN 251 (675)
T ss_dssp HSCCCC------------CCCBCCBCCSSCBCEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHHhcC----CCcEEEEeecCCCcEEEEEEEEcCCCCEEEEe
Confidence 7655432111001 24589999999779999999999887766553
No 37
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.39 E-value=1.4e-06 Score=89.21 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=82.0
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
-+..|++|+++ |||+| ++. .+++ .+++.+.++++| +|+||||....|+| ||.+..|.+|+.++.
T Consensus 115 K~~~k~~l~~~-----gip~p--~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~ 180 (451)
T 1ulz_A 115 KARSKEVMKKA-----GVPVV--PGSDGVLKS--LEEAKALAREIG-YPVLLKATAGGGGR----GIRICRNEEELVKNY 180 (451)
T ss_dssp HHHHHHHHHHT-----TCCBC--CBCSSSCCC--HHHHHHHHHHHC-SSEEEEECSSSSCC----SCEEESSHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCCC--CCcccccCC--HHHHHHHHHHcC-CCEEEEECCCCCCc----cEEEeCCHHHHHHHH
Confidence 45678999999 99998 555 4544 588888888887 79999999877766 888999999999888
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++++.......+ -..++||++++..+|+.+.+..|..+.++.+
T Consensus 181 ~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~ 223 (451)
T 1ulz_A 181 EQASREAEKAFG----RGDLLLEKFIENPKHIEYQVLGDKHGNVIHL 223 (451)
T ss_dssp HHHHHHHHHTTS----CCCEEEEECCCSCEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHhcC----CCeEEEEEcccCCeEEEEEEEEcCCCCEEEE
Confidence 877642111001 1469999999977899999999987766544
No 38
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.39 E-value=2.1e-06 Score=85.85 Aligned_cols=94 Identities=18% Similarity=0.053 Sum_probs=73.4
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccc-cCcccccCeeEEeCC--HHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDML-FGKRGKSGLVALNLD--LAQAATFV 85 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~-~g~Rgk~GgV~l~~s--~eea~~~a 85 (423)
+..|++|+++ |||+| ++..+++ .+++.++++++| +|+||||... .+|| ||.+..| .+|+.++
T Consensus 81 ~~~k~~l~~~-----GIptp--~~~~v~~--~~e~~~~~~~~G-~P~VvKp~~~G~~Gk----Gv~~v~~~~~~el~~a- 145 (355)
T 3eth_A 81 LTQKQLFDKL-----HLPTA--PWQLLAE--RSEWPAVFDRLG-ELAIVKRRTGGYDGR----GQWRLRANETEQLPAE- 145 (355)
T ss_dssp HHHHHHHHHT-----TCCBC--CEEEECC--GGGHHHHHHHHC-SEEEEEESSSCCTTT----TEEEEETTCGGGSCGG-
T ss_pred HHHHHHHHHC-----ccCCC--CEEEECC--HHHHHHHHHHcC-CCEEEEecCCCCCCC----eEEEEcCCCHHHHHHH-
Confidence 4578899999 99999 7888876 478888888998 8999999865 4555 7888777 8776642
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++ + .++||++++.++|+-+.+..|..|.+..+
T Consensus 146 --~~-------~------~vivEe~I~~~~Eisv~v~~~~~G~~~~~ 177 (355)
T 3eth_A 146 --CY-------G------ECIVEQGINFSGEVSLVGARGFDGSTVFY 177 (355)
T ss_dssp --GT-------T------TEEEEECCCCSEEEEEEEEECTTSCEEEC
T ss_pred --hh-------C------CEEEEEccCCCcEEEEEEEEcCCCCEEEE
Confidence 11 1 38999999988999999999987654443
No 39
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.37 E-value=5.7e-06 Score=81.90 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
.-+..|++|+++ |||+| ++..+++. + .....+++ +|+||||....+++ ||.+..+++|+.++.+
T Consensus 132 dK~~~k~~l~~~-----Gip~p--~~~~~~~~--~--~~~~~~lg-~PvvvKP~~~~~s~----Gv~~v~~~~el~~a~~ 195 (346)
T 3se7_A 132 DKSLTYLVARSA-----GIATP--NFWTVTAD--E--KIPTDQLT-YPVFVKPARSGSSF----GVSKVAREEDLQGAVE 195 (346)
T ss_dssp SHHHHHHHHHHT-----TCBCC--CEEEEETT--S--CCCTTTCC-SSEEEEESSCCTTT----TCEEECSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CcCcC--CEEEEcCc--H--HHHHHhcC-CCEEEEeCCCCCCc----CEEEECCHHHHHHHHH
Confidence 456789999999 99999 88888764 2 33456776 89999998765544 6888899999998887
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
+.... -..++||++++ ++|+.+++..|..+
T Consensus 196 ~~~~~----------~~~vlvEe~I~-G~E~~v~vl~~~~~ 225 (346)
T 3se7_A 196 AAREY----------DSKVLIEEAVI-GTEIGCAVMGNGPE 225 (346)
T ss_dssp HHTTT----------CSEEEEEECCC-SEEEEEEEEEETTE
T ss_pred HHHhC----------CCcEEEEeCcC-CEEEEEEEEecCCC
Confidence 76421 14699999999 89999999998654
No 40
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.36 E-value=1.7e-06 Score=88.61 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=81.7
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
-+..|++|+++ |||+| ++. .+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.+++
T Consensus 115 K~~~k~~l~~~-----gip~p--~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~ 180 (451)
T 2vpq_A 115 KDVAKAEMIKA-----NVPVV--PGSDGLMKD--VSEAKKIAKKIG-YPVIIKATAGGGGK----GIRVARDEKELETGF 180 (451)
T ss_dssp HHHHHHHHHHT-----TCCBC--SBCSSCBSC--HHHHHHHHHHHC-SSEEEEETTCCTTC----SEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCcC--CCcccCcCC--HHHHHHHHHhcC-CcEEEEECCCCCCC----CEEEeCCHHHHHHHH
Confidence 45678999999 99998 544 4544 688888888887 79999999877666 899999999999988
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++++.......+ -..++||++++..+|+.+.+..|..+.++.+
T Consensus 181 ~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~ 223 (451)
T 2vpq_A 181 RMTEQEAQTAFG----NGGLYMEKFIENFRHIEIQIVGDSYGNVIHL 223 (451)
T ss_dssp HHHHHHHHHHHS----CCCEEEEECCCSEEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHhhcC----CCcEEEEEecCCCeEEEEEEEEcCCCCEEEE
Confidence 877642111001 1458999999966899999999987765544
No 41
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.34 E-value=2.5e-06 Score=86.48 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++++
T Consensus 102 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~P~vvKp~~~~~g~----Gv~~v~~~~el~~~~~ 167 (422)
T 2xcl_A 102 SKQFAKDLMKKY-----DIPTA--EYETFTS--FDEAKAYVQEKG-APIVIKADGLAAGK----GVTVAMTEEEAIACLH 167 (422)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEESC--HHHHHHHHHHHC-SSEEEEESSCGGGT----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 456778999999 99999 7787776 578888888887 79999998876666 8999999999999988
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 168 ~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 168 DFLEDEKF--G--DASASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhhhc--c--CCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 88653210 1 0124599999999 8999999988754
No 42
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.33 E-value=1.3e-06 Score=87.77 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=78.8
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeecccc-CcccccCeeEEeCCHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLF-GKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
-+..|++|+++ |||+| ++..+++. +++.++++++| +|+||||.... +|| ||.+..|++|+.++++
T Consensus 111 K~~~k~~l~~~-----Gip~p--~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~gg~~g~----Gv~~v~~~~el~~a~~ 176 (377)
T 3orq_A 111 RLTEKETLKSA-----GTKVV--PFISVKES--TDIDKAIETLG-YPFIVKTRFGGYDGK----GQVLINNEKDLQEGFK 176 (377)
T ss_dssp HHHHHHHHHHT-----TCCBC--CEEEECSS--THHHHHHHHTC-SSEEEEESSSCCTTT----TEEEECSTTSHHHHHH
T ss_pred HHHHHHHHHHC-----CCCCC--CeEEECCH--HHHHHHHHHcC-CCEEEEeCCCCCCCC----CeEEECCHHHHHHHHH
Confidence 45678899999 99999 78888774 78888888897 89999998653 455 7888889999888877
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
.+.. ..++||++++..+|+.+.+.+|..+.+..+
T Consensus 177 ~~~~------------~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~ 210 (377)
T 3orq_A 177 LIET------------SECVAEKYLNIKKEVSLTVTRGNNNQITFF 210 (377)
T ss_dssp HHTT------------SCEEEEECCCEEEEEEEEEEECGGGCEEEC
T ss_pred hcCC------------CcEEEEccCCCCEEEEEEEEEeCCCCEEEE
Confidence 6532 348999999966999999998877655444
No 43
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.32 E-value=2.6e-06 Score=87.35 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++++
T Consensus 123 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~PvVvKp~~~~gg~----Gv~~v~~~~el~~~~~ 188 (451)
T 2yrx_A 123 SKAFAKELMKKY-----GIPTA--DHAAFTS--YEEAKAYIEQKG-APIVIKADGLAAGK----GVTVAQTVEEALAAAK 188 (451)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEESC--HHHHHHHHHHHC-SSEEEEECC----C----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHhcC-CcEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 345678999999 99999 7787776 588888888887 79999999877666 8999999999999988
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++.... .+ ..-..++||++++ +.|+.+.+..|..
T Consensus 189 ~~~~~~~--~g--~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 189 AALVDGQ--FG--TAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp HHHHHSC--CB--TTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhccc--cC--CCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 8864211 01 1124699999999 7899999888754
No 44
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.32 E-value=1.9e-06 Score=88.45 Aligned_cols=107 Identities=8% Similarity=0.108 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
+-+..|++|+++ |||+| ++. .+++ .+++.+.++++| +|+||||....|+| ||.+..|.+|+.++
T Consensus 120 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 185 (461)
T 2dzd_A 120 DKVKARHAAVNA-----GIPVI--PGSDGPVDG--LEDVVAFAEAHG-YPIIIKAALGGGGR----GMRIVRSKSEVKEA 185 (461)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBCSSCCSS--HHHHHHHHHHHC-SCEEEEESTTCSSS----SEEEECCGGGHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CCcccCcCC--HHHHHHHHHhcC-CcEEEEeCCCCCCC----CEEEeCCHHHHHHH
Confidence 456789999999 99999 554 4544 588888888887 79999999887777 88999999999988
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVS 131 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il 131 (423)
+++++.......+ -..++||++++..+|+.+.+..|..+.++.
T Consensus 186 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~ 228 (461)
T 2dzd_A 186 FERAKSEAKAAFG----SDEVYVEKLIENPKHIEVQILGDYEGNIVH 228 (461)
T ss_dssp HHHHHHHHHHHTS----CCCEEEEECCCSCEEEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHhhcC----CCcEEEEECCCCCeEEEEEEEEcCCCCEEE
Confidence 8877642111011 145899999997789999999998776553
No 45
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.32 E-value=2.9e-06 Score=85.96 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++++
T Consensus 101 dK~~~~~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~P~vvKp~~~~gg~----Gv~~v~~~~el~~~~~ 166 (417)
T 2ip4_A 101 SKAFAKGLMERY-----GIPTA--RYRVFRE--PLEALAYLEEVG-VPVVVKDSGLAAGK----GVTVAFDLHQAKQAVA 166 (417)
T ss_dssp CHHHHHHHHHHT-----CCCBC--CEEEESS--HHHHHHHHHHHC-SSEEEECTTSCSST----TCEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeeeeCC--HHHHHHHHHHcC-CCEEEEECCCCCCC----CEEEeCCHHHHHHHHH
Confidence 346778999999 99999 7777766 578888888887 79999998776666 8899999999999988
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++.... + ..++||++++ +.|+.+.+..|..
T Consensus 167 ~~~~~~~---~-----~~~lvEe~i~-g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 167 NILNRAE---G-----GEVVVEEYLE-GEEATVLALTDGE 197 (417)
T ss_dssp HHTTSSS---C-----CCEEEEECCC-SCEEEEEEEESSS
T ss_pred HHHhhcc---C-----CeEEEEECcc-CcEEEEEEEEeCC
Confidence 8762211 1 4599999999 7899998887643
No 46
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.30 E-value=1.2e-06 Score=100.17 Aligned_cols=107 Identities=9% Similarity=0.072 Sum_probs=30.9
Q ss_pred HHHHHHHHHchhCCCCCccCCCce-EEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSA-QVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~-~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
+.+|++|+++ |||+| ++ ..+++ .+++.++++++| +|+||||....||| ||.++.|.+|+.+++++
T Consensus 146 ~~ak~ll~~a-----GIPvp--p~~~~v~s--~eea~~~a~~iG-yPvVVKP~~GgGGk----GV~iv~s~eEL~~a~~~ 211 (1236)
T 3va7_A 146 HSAREIAERA-----KVPLV--PGSGLIKD--AKEAKEVAKKLE-YPVMVKSTAGGGGI----GLQKVDSEDDIERVFET 211 (1236)
T ss_dssp THHHHHHHHT-----TCCCC--C---------------------------------------------------------
T ss_pred HHHHHHHHHc-----CCCCC--CeeEecCC--HHHHHHHHHHcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHH
Confidence 5679999999 99998 53 44544 478888888997 89999998877777 78889999999988887
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeeee
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFS 133 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~s 133 (423)
+....... ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 212 ~~~~a~~~----~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~ 253 (1236)
T 3va7_A 212 VQHQGKSY----FGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIG 253 (1236)
T ss_dssp -------------------------CCEEEEEEEEEESSSCEEEEE
T ss_pred HHHHHHhc----cCCCcEEEeeccCCCeEEEEEEEecCCceEEEEe
Confidence 75422110 0124599999999779999999999887666654
No 47
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.30 E-value=3.6e-06 Score=85.35 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +|+||||....++| ||.+..|.+|+.++++
T Consensus 102 dK~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~~-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~ 167 (424)
T 2yw2_A 102 SKAFAKTFMKKY-----GIPTA--RYEVFTD--FEKAKEYVEKVG-APIVVKADGLAAGK----GAVVCETVEKAIETLD 167 (424)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEESC--HHHHHHHHHHHC-SSEEEEESSCCTTC----SEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHHcC-CcEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 346678999999 99999 7777766 578888888887 79999998776666 8999999999999988
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 168 ~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~~G~ 202 (424)
T 2yw2_A 168 RFLNKKIF--G--KSSERVVIEEFLE-GEEASYIVMINGD 202 (424)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhhhc--c--CCCCeEEEEECCC-CcEEEEEEEEcCC
Confidence 88653210 1 0124599999999 7899999888743
No 48
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.30 E-value=1.2e-06 Score=99.97 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
+-+.+|++|+++ |||+| ++. .+++ .+++.++++++| +|+||||....||| ||.++.|++|+.++
T Consensus 134 DK~~~k~~l~~~-----GIPvp--~~~~~~v~s--~eea~~~a~~ig-yPvVVKp~~g~GG~----Gv~iv~s~eEL~~a 199 (1165)
T 2qf7_A 134 NKVAARNLAISV-----GVPVV--PATEPLPDD--MAEVAKMAAAIG-YPVMLKASWGGGGR----GMRVIRSEADLAKE 199 (1165)
T ss_dssp SHHHHHHHHHHT-----TCCBC----------------------------------------------------------
T ss_pred CHHHHHHHHHHc-----CCCCC--CeeCcCCCC--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHH
Confidence 356789999999 99999 655 4544 478888888887 89999999887777 78888999999888
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
++++........+ -..++||++++.++|+.+.+..|+.+.++.+
T Consensus 200 ~~~~~~~a~~~fg----~~~vlVEefI~gg~EisV~vl~D~~G~vv~l 243 (1165)
T 2qf7_A 200 VTEAKREAMAAFG----KDEVYLEKLVERARHVESQILGDTHGNVVHL 243 (1165)
T ss_dssp ------------------------CCCSSEEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHhhcC----CCcEEEEEeccCCcEEEEEEEEcCCCcEEEE
Confidence 8776542111001 2458999999988999999999988766543
No 49
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.25 E-value=1.7e-06 Score=98.56 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceE--EecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQ--VIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~--~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
.-+.+|++|+++ |||+| ++. .+.+ .+++.++++++| ||+||||..-.|+| ||++..|++|+.++
T Consensus 118 DK~~~r~ll~~a-----GIPvp--p~~~~~v~s--~eea~~~a~~iG-yPvVVKP~~GgGg~----Gv~vv~s~eeL~~a 183 (1150)
T 3hbl_A 118 DKVKARTTAIKA-----DLPVI--PGTDGPIKS--YELAKEFAEEAG-FPLMIKATSGGGGK----GMRIVREESELEDA 183 (1150)
T ss_dssp SHHHHHHHHHHT-----TCCBC--CBCSSCBCS--SSTTTTTGGGTC-SSEEEECCC-----------CEECCSSSCTHH
T ss_pred CHHHHHHHHHHc-----CcCCC--CccccCCCC--HHHHHHHHHHcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHH
Confidence 456789999999 99999 555 4555 477888888997 89999998776666 78888898888888
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
+++.........+ -..++||++++..+|+.+.+..|..+.++.+
T Consensus 184 ~~~a~~~a~~~fg----~~~vlVEeyI~G~reieV~vl~d~~G~vv~l 227 (1150)
T 3hbl_A 184 FHRAKSEAEKSFG----NSEVYIERYIDNPKHIEVQVIGDEHGNIVHL 227 (1150)
T ss_dssp HHSSSSSCC----------CBEEECCCSSCEEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHhhcC----CCcEEEEEccCCCcEEEEEEEEeCCCCEEEE
Confidence 7766532111001 2468999999977999999999988776654
No 50
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.25 E-value=5.2e-06 Score=85.11 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=75.4
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCc-EEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCK-LVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~p-vVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
-+..|++|+++ |||+| ++..+++ .+++.+.+++++ +| +||||....+|| ||.+..|.+|+.++++
T Consensus 129 K~~~k~~l~~~-----gip~p--~~~~~~~--~~~~~~~~~~~g-~P~vvvKp~~~~gg~----Gv~~v~~~~el~~~~~ 194 (452)
T 2qk4_A 129 KRFAKEFMDRH-----GIPTA--QWKAFTK--PEEACSFILSAD-FPALVVKASGLAAGK----GVIVAKSKEEACKAVQ 194 (452)
T ss_dssp HHHHHHHHHHT-----TCCBC--CEEEESS--HHHHHHHHHHCS-SCEEEEEESBC---C----CEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHC-----CCCCC--CeEEECC--HHHHHHHHHhCC-CCeEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 45678999999 99999 7787766 578888888887 79 999998776666 8999999999999988
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+++..... +. .-..++||++++ +.|+.+.+..|..
T Consensus 195 ~~~~~~~~--g~--~~~~~lvEe~i~-G~E~sv~~~~dG~ 229 (452)
T 2qk4_A 195 EIMQEKAF--GA--AGETIVIEELLD-GEEVSCLCFTDGK 229 (452)
T ss_dssp HHTTC-----------CCEEEEECCC-SEEEEEEEEECSS
T ss_pred HHHhhhhc--cC--CCCeEEEEECCC-CCeEEEEEEECCC
Confidence 88653210 10 124699999999 8999998887643
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.22 E-value=2.8e-05 Score=80.55 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
..-+..|++|+++ |||+| ++..+++ .+++.++++++| +|+||||..-.|++ ||.+..|.+|+.+++
T Consensus 138 ~DK~~~k~~l~~~-----GIpvp--~~~~v~s--~ee~~~~~~~lg-~PvVVKP~~g~gg~----Gv~iv~~~eel~~a~ 203 (474)
T 3vmm_A 138 RDKNKMRDAFNKA-----GVKSI--KNKRVTT--LEDFRAALEEIG-TPLILKPTYLASSI----GVTLITDTETAEDEF 203 (474)
T ss_dssp TCHHHHHHHHHHT-----TSCCC--CEEEECS--HHHHHHHHHHSC-SSEEEEESSCCTTT----TCEEECCTTSHHHHH
T ss_pred hCHHHHHHHHHHc-----CCCCC--CeEEECC--HHHHHHHHHHcC-CCEEEEECCCCcCc----eEEEECCHHHHHHHH
Confidence 4567889999999 99999 7788876 588888899997 89999998876666 788888888888888
Q ss_pred HHHhcccchhccCC--cceeEEEEEeecCCC
Q 014512 86 KECLGKEMEMSECK--GPITTFIIEPFIPHN 114 (423)
Q Consensus 86 ~~~l~~~~~~~g~~--~~v~~vlVe~~~~~~ 114 (423)
+++.........+. ..-..++||++++..
T Consensus 204 ~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 204 NRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp HHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred HHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 77654211000000 012569999999944
No 52
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.19 E-value=5.5e-05 Score=75.20 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCH-HHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNF-DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~-~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a 85 (423)
.-+..|++|++. |||+| ++....+.+. ..+.+++.++| +|+||||-...+++ ||.++.|.++..++.
T Consensus 139 DK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~gg~s~----Gv~~v~~~~el~~~~ 206 (357)
T 4fu0_A 139 DKDRAHKLVSLA-----GISVP--KSVTFKRFNEEAAMKEIEANLT-YPLFIKPVRAGSSF----GITKVIEKQELDAAI 206 (357)
T ss_dssp CHHHHHHHHHHT-----TCBCC--CEEEEEGGGHHHHHHHHHHHCC-SSEEEEETTCSSST----TCEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEeecCCChHHHHHHHHHhcC-CCEEEEECCCCCCC----ceEEeccHHhHHHHH
Confidence 346689999999 99999 7777655322 22345667887 89999997654444 788899999998877
Q ss_pred HHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 86 KECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 86 ~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+..... + ..++||++++ ++|+-+++..|..
T Consensus 207 ~~a~~~-----~-----~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 207 ELAFEH-----D-----TEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp HHHTTT-----C-----SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHhcc-----C-----CeEEEEEecC-CEEEEEEEEecCC
Confidence 765321 1 4689999997 7999999988765
No 53
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.17 E-value=2.7e-05 Score=78.92 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=69.2
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..|++|+++ |||+| ++..+++. +++. +.++| +|+||||....|+| ||.+..|.+|+.+++++
T Consensus 113 K~~~k~~l~~~-----gip~p--~~~~~~~~--~~~~--~~~~g-~P~vvKp~~g~gs~----Gv~~v~~~~el~~a~~~ 176 (425)
T 3vot_A 113 KNKTRSILQQN-----GLNTP--VFHEFHTL--ADLE--NRKLS-YPLVVKPVNGFSSQ----GVVRVDDRKELEEAVRK 176 (425)
T ss_dssp HHHHHHHHHHT-----TCCCC--CEEEESSG--GGGT--TCCCC-SSEEEEESCC---------CEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHC-----CCCCC--ceeccCcH--HHHH--HhhcC-CcEEEEECCCCCCC----CceEechHHHHHHHHHH
Confidence 35678899999 99999 77888763 5553 35677 89999998776666 89999999999999888
Q ss_pred Hhcccchhcc-CCcceeEEEEEeecCCCceEEEEEEEeC
Q 014512 88 CLGKEMEMSE-CKGPITTFIIEPFIPHNEEFYLNIVSER 125 (423)
Q Consensus 88 ~l~~~~~~~g-~~~~v~~vlVe~~~~~~~E~ylgi~~D~ 125 (423)
+......... ....-..++||++++ +.|+-+.+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~lvEe~i~-G~e~sv~~~~~~ 214 (425)
T 3vot_A 177 VEAVNQRDLNRFVHGKTGIVAEQFID-GPEFAIETLSIQ 214 (425)
T ss_dssp HHHHTTSSHHHHHTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred HHhhhhhhhhhhccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence 7642210000 000124689999998 679988777664
No 54
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.12 E-value=1.3e-05 Score=80.82 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHchhCCCC-CccCCCceEEecCCC-H-HHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSG-RELPIKSAQVIESTN-F-DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAAT 83 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~G-I~vp~~~~~~~~~~~-~-~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~ 83 (423)
.-+..|++|+++ | ||+| ++..+.+.+ . +++.+++++++ +|+||||....+++ ||.++.|++|+.+
T Consensus 161 DK~~~k~~l~~~-----G~Ipvp--~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----GV~~v~~~~el~~ 228 (383)
T 3k3p_A 161 DKITTNQVLESA-----TTIPQV--AYVALIEGEPLESKLAEVEEKLI-YPVFVKPANMGSSV----GISKAENRTDLKQ 228 (383)
T ss_dssp CHHHHHHHHHHH-----CCCCBC--CEEEEETTSCHHHHHHHHHHHCC-SSEEEEECC----------CEEESSHHHHHH
T ss_pred CHHHHHHHHHhC-----CCcCCC--CEEEEeCccchhHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHH
Confidence 456789999999 9 9999 778776642 1 35666777887 89999998764444 7888899999998
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeC
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSER 125 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~ 125 (423)
+.++.... . ..++||++++ ++|+-+++..|.
T Consensus 229 al~~a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~d~ 259 (383)
T 3k3p_A 229 AIALALKY-----D-----SRVLIEQGVD-AREIEVGILGNT 259 (383)
T ss_dssp HHHHHHHH-----C-----SEEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHhC-----C-----CeEEEEcCCC-CeEEEEEEEeCC
Confidence 88776521 1 3699999999 899999999874
No 55
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.03 E-value=2.4e-05 Score=77.89 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCH-----HHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNF-----DELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQA 81 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~-----~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea 81 (423)
.-+..|++|+++ |||+| ++..+++.+. +++.+++++++ +|+||||....+++ ||.+..+.+++
T Consensus 129 dK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~~~~~~~~~~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el 196 (364)
T 2i87_A 129 DKLVMKQLFEHR-----GLPQL--PYISFLRSEYEKYEHNILKLVNDKLN-YPVFVKPANLGSSV----GISKCNNEAEL 196 (364)
T ss_dssp SHHHHHHHHHHH-----TCCCC--CEEEEEHHHHHHHHHHHHHHHHHHCC-SSEEEEESSCSSCT----TCEEESSHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEechhhcccchhHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHH
Confidence 346678999999 99999 7777765210 13455566787 79999998765555 78888999999
Q ss_pred HHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 82 ATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 82 ~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
..+.++.... . ..++||++++ ++|+.+.+..|+.
T Consensus 197 ~~a~~~~~~~-----~-----~~~lvEe~I~-G~E~~v~vl~~~~ 230 (364)
T 2i87_A 197 KEGIKEAFQF-----D-----RKLVIEQGVN-AREIEVAVLGNDY 230 (364)
T ss_dssp HHHHHHHHTT-----C-----SEEEEEECCC-CEEEEEEEEESSS
T ss_pred HHHHHHHHhc-----C-----CeEEEEeCcc-CeEEEEEEEcCCC
Confidence 8887766421 1 4699999999 7999999998864
No 56
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.01 E-value=1.5e-05 Score=87.11 Aligned_cols=91 Identities=12% Similarity=0.227 Sum_probs=70.9
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhh-cccCCCcEEEeeccccCcccccCeeEEe----CCHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKE-PWLTSCKLVVKPDMLFGKRGKSGLVALN----LDLAQAAT 83 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a-~~lg~~pvVvKaqv~~g~Rgk~GgV~l~----~s~eea~~ 83 (423)
..+|++|+++ |||+| ++..+++ .+++.+.+ +++| +|+||||....+|| ||.++ .|.+++.+
T Consensus 491 ~~tk~lL~~~-----GIPvP--~~~~~~~--~~ea~~~~~~~~g-~PvVVKP~~g~~G~----GV~iv~~~v~~~eel~~ 556 (757)
T 3ln7_A 491 VVTKKVLQKA-----GFNVP--QSVEFTS--LEKAVASYALFEN-RAVVIKPKSTNYGL----GITIFQQGVQNREDFAK 556 (757)
T ss_dssp HHHHHHHHHH-----TCCCC--CEEEESC--HHHHHHGGGGSSS-SCEEEEESSCSTTT----TCEECSSCCCCHHHHHH
T ss_pred HHHHHHHHHC-----CcCCC--CEEEECC--HHHHHHHHHHhcC-CCEEEEeCCCCCCC----CeEEecCCCCCHHHHHH
Confidence 3579999999 99999 7888876 57776665 6787 89999999876666 88887 79999988
Q ss_pred HHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 84 FVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 84 ~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
+.+..... + ..++||++++ ++|+-+.+.-|
T Consensus 557 al~~a~~~-----~-----~~vlVEefI~-G~Ei~v~Vlgg 586 (757)
T 3ln7_A 557 ALEIAFRE-----D-----KEVMVEDYLV-GTEYRFFVLGD 586 (757)
T ss_dssp HHHHHHHH-----C-----SSEEEEECCC-SEEEEEEEETT
T ss_pred HHHHHHhc-----C-----CcEEEEEcCC-CcEEEEEEECC
Confidence 87766421 1 3489999998 68988877633
No 57
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.95 E-value=3.4e-05 Score=74.01 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHH--------hhcccCCCcEEEeeccccCcccccCeeEEeCCH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQ--------KEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDL 78 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~--------~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~ 78 (423)
+-+..+++|+++ |||+| ++..+++ . ++.+ .+++++ +|+|+||....+++ ||.+..+.
T Consensus 96 dK~~~~~~l~~~-----gi~~p--~~~~~~~--~-~~~~~~~~~~~~~~~~~~-~p~vvKP~~g~~~~----gv~~v~~~ 160 (306)
T 1iow_A 96 DKLRSKLLWQGA-----GLPVA--PWVALTR--A-EFEKGLSDKQLAEISALG-LPVIVKPSREGSSV----GMSKVVAE 160 (306)
T ss_dssp CHHHHHHHHHHT-----TCCBC--CEEEEEH--H-HHHHCCCTHHHHHHHTTC-SSEEEEETTCCTTT----TCEEESSG
T ss_pred CHHHHHHHHHHC-----CCCCC--CeEEEch--h-hhhccchhhhhhHHhccC-CCEEEEeCCCCCCC----CEEEeCCH
Confidence 346678899999 99999 7777765 3 4544 456676 79999998876655 78888899
Q ss_pred HHHHHHHHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEE
Q 014512 79 AQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIV 122 (423)
Q Consensus 79 eea~~~a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~ 122 (423)
+++.++.+++... -..++||++++ +.|+.+.+.
T Consensus 161 ~el~~~~~~~~~~----------~~~~lvee~i~-g~e~~v~~~ 193 (306)
T 1iow_A 161 NALQDALRLAFQH----------DEEVLIEKWLS-GPEFTVAIL 193 (306)
T ss_dssp GGHHHHHHHHTTT----------CSEEEEEECCC-CCEEEEEEE
T ss_pred HHHHHHHHHHHhh----------CCCEEEEeCcC-CEEEEEEEE
Confidence 9988887776421 14699999999 789999887
No 58
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.92 E-value=1.5e-05 Score=79.98 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=72.6
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..|++|+++ |||+| ++..+++.+...+.....+++ +|+||||....+++ ||.+..|.+|+.++.++
T Consensus 152 K~~~k~~l~~~-----GIp~p--~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----GV~~v~~~~eL~~a~~~ 219 (373)
T 3lwb_A 152 KEFTKKLLAAD-----GLPVG--AYAVLRPPRSTLHRQECERLG-LPVFVKPARGGSSI----GVSRVSSWDQLPAAVAR 219 (373)
T ss_dssp HHHHHHHHHHT-----TCCBC--CEEEECTTCCCCCHHHHHHHC-SCEEEEESBCSTTT----TCEEECSGGGHHHHHHH
T ss_pred HHHHHHHHHHc-----CcCCC--CEEEEECcccchhHHHHHhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHHH
Confidence 45678999999 99999 778877642111123356777 89999998765444 78888999999888777
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
.... . ..++||++++ ++|+.+++..|+..
T Consensus 220 a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~~~~~ 248 (373)
T 3lwb_A 220 ARRH-----D-----PKVIVEAAIS-GRELECGVLEMPDG 248 (373)
T ss_dssp HHTT-----C-----SSEEEEECCE-EEEEEEEEEECTTS
T ss_pred HHhc-----C-----CCEEEeCCCC-CeEEEEEEEECCCC
Confidence 6531 1 3489999999 79999999988754
No 59
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.91 E-value=1.1e-05 Score=80.60 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=66.4
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeecccc-CcccccCeeEEeCCHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLF-GKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~-g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
-+..|++|+++ |||+| ++..+++ .++ .+++++ +|+|+||.... +++ ||.+..|.+|+.++.+
T Consensus 101 K~~~~~~l~~~-----gip~p--~~~~~~~--~~~---~~~~~~-~P~vvKp~~~~y~g~----Gv~~v~~~~el~~~~~ 163 (380)
T 3ax6_A 101 KFVQKEFLKKN-----GIPVP--EYKLVKD--LES---DVREFG-FPVVQKARKGGYDGR----GVFIIKNEKDLENAIK 163 (380)
T ss_dssp HHHHHHHHHHT-----TCCCC--CEEECSS--HHH---HHHTTC-SSEEEEESCCC---------EEEECSGGGGGGCCC
T ss_pred HHHHHHHHHHc-----CCCCC--CeEEeCC--HHH---HHHhcC-CCEEEEecCCCCCCC----CeEEECCHHHHHHHhc
Confidence 35678899999 99999 7777766 355 455676 79999999875 666 8888888776542211
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCeeee
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSF 132 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~il~ 132 (423)
..++||++++.+.|+.+.+..|..+.+..+
T Consensus 164 ----------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~ 193 (380)
T 3ax6_A 164 ----------------GETYLEEFVEIEKELAVMVARNEKGEIACY 193 (380)
T ss_dssp ----------------SSEEEEECCCEEEEEEEEEEECSSCCEEEE
T ss_pred ----------------CCEEEEeccCCCeeEEEEEEECCCCCEEEE
Confidence 458999999977999999999877654433
No 60
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.91 E-value=2.8e-05 Score=76.68 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
+-+..|++|+++ |||+| ++..+++. +++. +.+++ +|+||||....+++ ||.+..+.+|...+.+
T Consensus 132 dK~~~k~~l~~~-----Gip~p--~~~~~~~~--~~~~--~~~~~-~PvvvKP~~~~~s~----Gv~~v~~~~el~~a~~ 195 (343)
T 1e4e_A 132 DKSLTYIVAKNA-----GIATP--AFWVINKD--DRPV--AATFT-YPVFVKPARSGSSF----GVKKVNSADELDYAIE 195 (343)
T ss_dssp SHHHHHHHHHHT-----TCBCC--CEEEECTT--CCCC--GGGSC-SCEEEEESSCCTTT----TCEEECSGGGHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCcC--CEEEEech--hhhh--hhccC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 346778999999 99999 77887664 3322 15676 79999998865555 6888889999888877
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLG 127 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~ 127 (423)
+.... . ..++||++++ ++|+.+.+..|+.+
T Consensus 196 ~~~~~-----~-----~~~lvEe~I~-G~E~~v~vl~~~~~ 225 (343)
T 1e4e_A 196 SARQY-----D-----SKILIEQAVS-GCEVGCAVLGNSAA 225 (343)
T ss_dssp HHTTT-----C-----SSEEEEECCC-SEEEEEEEEEETTC
T ss_pred HHHhc-----C-----CcEEEEeCcC-CeEEEEEEEeCCCC
Confidence 76421 1 3589999998 79999999988755
No 61
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.90 E-value=3.1e-05 Score=75.44 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhh--cccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKE--PWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a--~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
+-+..|++|+++ |||+| ++.. + .+++.+.. .+++ +|+|+||....+++ ||.+..|.+++.++
T Consensus 114 dK~~~~~~l~~~-----gip~p--~~~~--~--~~~~~~~~~~~~~~-~P~vvKp~~g~g~~----gv~~v~~~~el~~~ 177 (331)
T 2pn1_A 114 DKYTMYEYCLRQ-----GIAHA--RTYA--T--MASFEEALAAGEVQ-LPVFVKPRNGSASI----EVRRVETVEEVEQL 177 (331)
T ss_dssp BHHHHHHHHHHH-----TCCCC--CEES--S--HHHHHHHHHTTSSC-SCEEEEESBC----------------------
T ss_pred CHHHHHHHHHHc-----CCCCC--cEEe--c--HHHhhhhhhcccCC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHH
Confidence 346778999999 99999 6543 2 35555544 4676 79999998765554 78888888877655
Q ss_pred HHHHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe-CCCCee
Q 014512 85 VKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE-RLGCSV 130 (423)
Q Consensus 85 a~~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D-~~~p~i 130 (423)
.++ ...++||++++ +.|+.+.+..| ..+.++
T Consensus 178 ~~~--------------~~~~lvee~i~-G~e~~v~~~~d~~~G~~~ 209 (331)
T 2pn1_A 178 FSK--------------NTDLIVQELLV-GQELGVDAYVDLISGKVT 209 (331)
T ss_dssp -------------------CEEEEECCC-SEEEEEEEEECTTTCCEE
T ss_pred HHh--------------CCCeEEEecCC-CcEEEEEEEEecCCCeEE
Confidence 332 13589999999 59999999999 666544
No 62
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.81 E-value=8.8e-05 Score=72.61 Aligned_cols=93 Identities=11% Similarity=0.047 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
.-+..|++|+++ |||+| ++..+++. ++ ++. ++| +|+||||....+++ ||.+..+.+|+.++.+
T Consensus 118 dK~~~k~~l~~~-----Gip~p--~~~~~~~~--~~--~~~-~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el~~a~~ 180 (322)
T 2fb9_A 118 DKDLSKRVLAQA-----GVPVV--PWVAVRKG--EP--PVV-PFD-PPFFVKPANTGSSV----GISRVERFQDLEAALA 180 (322)
T ss_dssp CHHHHHHHHHHT-----TCCCC--CEEEEETT--SC--CCC-CSC-SCEEEEETTCCTTT----TCEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----CCCCC--CEEEEECc--hh--hhh-ccC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 346679999999 99999 77887764 23 122 676 79999998865544 7888899999988887
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+.+.. -..++||++++..+|+.+++..|+.
T Consensus 181 ~~~~~----------~~~vlvEe~I~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 181 LAFRY----------DEKAVVEKALSPVRELEVGVLGNVF 210 (322)
T ss_dssp HHTTT----------CSEEEEEECCSSCEEEEEEEESSSS
T ss_pred HHHhc----------CCeEEEEeCCCCCeeEEEEEEeCCC
Confidence 76421 1469999999843899999997764
No 63
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.80 E-value=1.5e-05 Score=75.30 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=63.1
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..+++|+++ |||+| ++..+++ .+++.+.+++++ +|+|+||....+++ ||.+..+.+++.++.++
T Consensus 89 K~~~~~~l~~~-----gi~~p--~~~~~~~--~~~~~~~~~~~~-~p~vvKp~~g~~~~----gv~~v~~~~el~~~~~~ 154 (280)
T 1uc8_A 89 KWATSVALAKA-----GLPQP--KTALATD--REEALRLMEAFG-YPVVLKPVIGSWGR----LLAXXXXXXXXXXXXXX 154 (280)
T ss_dssp HHHHHHHHHHT-----TCCCC--CEEEESS--HHHHHHHHHHHC-SSEEEECSBCCBCS----HHHHHHHHHC-------
T ss_pred HHHHHHHHHHc-----CcCCC--CeEeeCC--HHHHHHHHHHhC-CCEEEEECCCCCcc----cceecccccccchhhhh
Confidence 45678899999 99999 7788776 577777777887 79999998865544 77777777777766655
Q ss_pred H--hcccchhccCCcceeEEEEEeecCC-CceEEEEEE
Q 014512 88 C--LGKEMEMSECKGPITTFIIEPFIPH-NEEFYLNIV 122 (423)
Q Consensus 88 ~--l~~~~~~~g~~~~v~~vlVe~~~~~-~~E~ylgi~ 122 (423)
+ ++.. .-..++||++++. +.|+.+.+.
T Consensus 155 ~~~~~~~--------~~~~~lvqe~i~~~~~e~~v~v~ 184 (280)
T 1uc8_A 155 KEVLGGF--------QHQLFYIQEYVEKPGRDIRVFVV 184 (280)
T ss_dssp -----CT--------TTTCEEEEECCCCSSCCEEEEEE
T ss_pred Hhhhccc--------CCCcEEEEeccCCCCceEEEEEE
Confidence 4 2110 1145899999996 678777665
No 64
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.77 E-value=6.9e-05 Score=75.04 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHH
Q 014512 7 REYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~ 86 (423)
.-+..|++|+++ |||+| ++..+.+.+.+++.+ +.++| +|+||||....+++ ||.+..|.+|+.++.+
T Consensus 149 DK~~~k~~l~~~-----Gip~p--~~~~~~~~~~~~~~~-~~~lg-~PvvVKP~~g~ss~----Gv~~v~~~~el~~a~~ 215 (367)
T 2pvp_A 149 NKYLTKLYAKDL-----GIKTL--DYVLLNEKNRANALD-LMNFN-FPFIVKPSNAGSSL----GVNVVKEEKELIYALD 215 (367)
T ss_dssp SHHHHHHHHHHH-----TCBCC--CCEEECTTTGGGHHH-HCCSC-SCEEEEESSCCTTT----TCEEESSTTSHHHHHH
T ss_pred CHHHHHHHHHHC-----CcCCC--CEEEEeCCchHHHHH-HhccC-CCEEEEECCCCCCC----CEEEECCHHHHHHHHH
Confidence 346679999999 99999 778877643226666 67787 89999998765555 7788888888888877
Q ss_pred HHhcccchhccCCcceeEEEEEeecCCCceEE
Q 014512 87 ECLGKEMEMSECKGPITTFIIEPFIPHNEEFY 118 (423)
Q Consensus 87 ~~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~y 118 (423)
+.+.. . ..++||+++++.+|+.
T Consensus 216 ~~~~~-----~-----~~vlVEe~I~G~~E~s 237 (367)
T 2pvp_A 216 SAFEY-----S-----KEVLIEPFIQGVKEYN 237 (367)
T ss_dssp HHTTT-----C-----SCEEEEECCTTCEEEE
T ss_pred HHHhc-----C-----CcEEEEeCCCCCceee
Confidence 66421 1 3589999998438944
No 65
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.50 E-value=0.0002 Score=71.61 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=62.4
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKEC 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~ 88 (423)
.-.|++|+++ |||+| +. .++ ++++ + +|+||||....+|| ||.++.|.+|+.++++++
T Consensus 126 ~~~k~~l~~~-----GIptp--~~--~~~--~~e~-------~-~PvVVK~~~~a~Gk----Gv~v~~s~ee~~~a~~~~ 182 (361)
T 2r7k_A 126 SLEGKLLREA-----GLRVP--KK--YES--PEDI-------D-GTVIVKFPGARGGR----GYFIASSTEEFYKKAEDL 182 (361)
T ss_dssp HHHHHHHHHT-----TCCCC--CE--ESS--GGGC-------C-SCEEEECSCCCC-------EEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----CcCCC--CE--eCC--HHHc-------C-CCEEEeeCCCCCCC----CEEEECCHHHHHHHHHHH
Confidence 3457899999 99999 43 333 3443 3 79999999887777 999999999999999988
Q ss_pred hcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 89 LGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 89 l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+..... +. .....++||++++ +.|+.+....++.
T Consensus 183 ~~~~~~--~~-~~~~~viIEEfl~-G~e~s~~~f~~~~ 216 (361)
T 2r7k_A 183 KKRGIL--TD-EDIANAHIEEYVV-GTNFCIHYFYSPL 216 (361)
T ss_dssp HHTTSC--CH-HHHHHCEEEECCC-SEEEEEEEEEETT
T ss_pred Hhcccc--cc-CCCCeEEEEeccc-eEEeeEEEEeccc
Confidence 753211 10 1113589999998 7787644445543
No 66
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=97.15 E-value=0.0018 Score=63.94 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCC--CCHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFT 345 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~--a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~ 345 (423)
.|+||+++-.|+++...+|.+...|. -..-++-+|++ +... +.+.++.+.+ ||++++|++.. .+|+.+
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~g~--G~S~~VsiGn~~~~d~~-~~D~l~~~~~----Dp~T~~I~l~gEi~g~~e-- 238 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRTTD--GVYEGVAIGGDRYPGST-FMDHVLRYQD----TPGVKMIVVLGEIGGTEE-- 238 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSS--CEEEEEECCSSSSCSSC-HHHHHHHHHT----CTTCCEEEEEEESSSSHH--
T ss_pred CCCEEEEeCchHHHHHHHHHHHhcCC--CeEEEEECCCCccCCCC-HHHHHHHHhc----CCCCCEEEEEEecCChHH--
Confidence 69999999999999999999988643 35678899998 5544 6677887777 99999988875 677653
Q ss_pred HHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHH
Q 014512 346 DVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQ 382 (423)
Q Consensus 346 ~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~ 382 (423)
+.+++++++.. .+||||+...|.++.
T Consensus 239 ------~~~~~~~r~~~-----~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 239 ------YKICRGIKEGR-----LTKPIVCWCIGTCAT 264 (334)
T ss_dssp ------HHHHHHHHTTS-----CCSCEEEEEECTTCC
T ss_pred ------HHHHHHHHhhc-----CCCCEEEEEcCCCcc
Confidence 22345566532 479999987776554
No 67
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.07 E-value=0.0023 Score=61.83 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..|++|+++ |||+| ++ +.+ .++ ++ +|+||||....+++ ||.+..|.+++.++.++
T Consensus 101 K~~~~~~l~~~-----gip~p--~~--~~~--~~~-------l~-~P~vvKP~~g~~s~----Gv~~v~~~~el~~~~~~ 157 (334)
T 2r85_A 101 RNLERKWLKKA-----GIRVP--EV--YED--PDD-------IE-KPVIVKPHGAKGGK----GYFLAKDPEDFWRKAEK 157 (334)
T ss_dssp HHHHHHHHHHT-----TCCCC--CB--CSC--GGG-------CC-SCEEEEECC----T----TCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCCC--Cc--cCC--hHH-------cC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHH
Confidence 35567889998 99999 55 333 233 44 79999998876666 78889999999988877
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
+...... . .-..++||++++ +.|+.+.+..+..
T Consensus 158 ~~~~~~~--~---~~~~~lvee~i~-G~e~~~~~~~~~~ 190 (334)
T 2r85_A 158 FLGIKRK--E---DLKNIQIQEYVL-GVPVYPHYFYSKV 190 (334)
T ss_dssp HHCCCSG--G---GCCSEEEEECCC-CEEEEEEEEEETT
T ss_pred HHhhccc--C---CCCcEEEEeccC-CceeEEEEeecCc
Confidence 7542100 0 114589999998 6788766666644
No 68
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=96.84 E-value=0.0049 Score=63.76 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCC-----CHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-----NEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a-----~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.|+||+++-.|+++...+|.+... |--...++-+|+++ ..-.+.+.++.+.+ ||++++|++..=+ +
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~~--g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~----Dp~T~~I~ly~E~-~-- 182 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALA--GEGITHAIGLGGRDLSREVGGISALTALEMLSA----DEKSEVLAFVSKP-P-- 182 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHT----CTTCCEEEEEESC-C--
T ss_pred CCCEEEEeccHHHHHHHHHHHHHc--CCCceEEEEcCCCccccccCCCCHHHHHHHHhc----CCCCCEEEEEEec-C--
Confidence 599999999999999999999886 44467788899984 55567788888877 9999999887732 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
.+.++ +.++++.+. .+||||+...|.+..- |+ ++|+-.. +|++|....+.-+++
T Consensus 183 ~e~~~---~~f~~~ar~-------~~KPVV~~k~Grs~~g----~r----~~Gvirv-----~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 183 AEAVR---LKIVNAMKA-------TGKPTVALFLGYTPAV----AR----DENVWFA-----SSLDEAARLACLLSR 236 (480)
T ss_dssp CHHHH---HHHHHHHHH-------HCSCEEEEETTCCCSS----SE----ETTEEEE-----SSHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHh-------CCCCEEEEEeCCCCcc----cc----cCCEEEE-----CCHHHHHHHHHHHhc
Confidence 24455 556666653 3699999977765433 44 7888543 799998888776655
No 69
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=96.75 E-value=0.0033 Score=61.31 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~-~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+||+++-.|+++...+|.+... |--...++-+|+++. .-.+.+.++.+.+ ||++++|++.. .+|-. .+
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~S~~vs~G~~~~~~~~~~d~l~~~~~----Dp~T~~I~l~~E~~g~~--e~ 223 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQV--GLGQSLCVGIGGDPFNGTDFTDCLEIFLN----DPATEGIILIGEIGGNA--EE 223 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSCCHHHHHHHHHH----CTTCCEEEEEEESSSSH--HH
T ss_pred CCCEEEEecchHHHHHHHHHHHhc--CCCeeEEeccCCCcCCCCCHHHHHHHHhc----CCCCcEEEEEEecCCch--hh
Confidence 599999999999999999999885 444677899999984 3456788888877 99999998888 55532 23
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
-+ ..++++.+.. .++||||+...|.+.
T Consensus 224 ~~---~~f~~~~~~~-----~~~KPVv~~k~G~s~ 250 (305)
T 2fp4_A 224 NA---AEFLKQHNSG-----PKSKPVVSFIAGLTA 250 (305)
T ss_dssp HH---HHHHHHHSCS-----TTCCCEEEEEECTTC
T ss_pred HH---HHHHHHHHHh-----cCCCCEEEEEecCCc
Confidence 33 4555544332 147999998665444
No 70
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=96.73 E-value=0.011 Score=57.22 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=83.1
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-GEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+||+++-.|+++...+|.+... |--...++-+|+++.. -.+.+.++.+.+ ||++++|++.. .++- ...
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~t~~I~l~~E~~~~--~~~ 215 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQA--GLGTTTTVGIGGDPVIGTTFKDLLPLFNE----DPETEAVVLIGEIGGS--DEE 215 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSCCSSCHHHHHHHHHT----CTTCCEEEEEECSSSS--HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HHH
Confidence 599999999999999999999886 4346778999999842 346677887777 99999998888 4442 223
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHH----------------HHHhhhhhcCCceeecCCCCCHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLA----------------KMRALAEEIGLPIEVYGPEATMTG 410 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~----------------~l~~~~~~~Gip~~~~g~~~t~~~ 410 (423)
-+ ...+++ . .+||||+...|.+...+++ ....+.+++|+... +|++|
T Consensus 216 ~~---~~~~~~----~-----~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~~-----~~~~e 278 (288)
T 1oi7_A 216 EA---AAWVKD----H-----MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVA-----DTIDE 278 (288)
T ss_dssp HH---HHHHHH----H-----CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCBC-----SSHHH
T ss_pred HH---HHHHHh----c-----CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeEe-----CCHHH
Confidence 23 222322 1 4799999887766522222 22334447888654 78887
Q ss_pred HHHHHHHH
Q 014512 411 ICKQAIEC 418 (423)
Q Consensus 411 av~~~v~~ 418 (423)
....+.++
T Consensus 279 l~~~~~~~ 286 (288)
T 1oi7_A 279 IVELVKKA 286 (288)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
No 71
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=96.61 E-value=0.0078 Score=58.39 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=82.8
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-GEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+||+++-.|+++...+|.+... |--..-++-+|+++.. -.+.+.++.+.+ ||++++|++.. .++- ...
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~~~--~~~ 222 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQ--GIGQSTVIGIGGDPIVGLSFTEALKLFQE----DPQTEALVLIGEIGGD--MEE 222 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEECSSSS--HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCeeEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HHH
Confidence 599999999999999999999885 3346778999999842 246677887777 99999998888 5442 222
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHH----------------HHHhhhhhcCCceeecCCCCCHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLA----------------KMRALAEEIGLPIEVYGPEATMTG 410 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~----------------~l~~~~~~~Gip~~~~g~~~t~~~ 410 (423)
-+ ..++ +... .+||||+...|.+...+++ ....+.+++|+... +|++|
T Consensus 223 ~~---~~~~---~~~~-----~~KPVv~~k~G~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~v-----~~~~e 286 (297)
T 2yv2_A 223 RA---AEMI---KKGE-----FTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVA-----ETPFE 286 (297)
T ss_dssp HH---HHHH---HTTS-----CCSCEEEEESCCC------------------CSHHHHHHHHHTTTCEEE-----SSGGG
T ss_pred HH---HHHH---Hhcc-----CCCCEEEEEeCCCCccccccCCccccccCCCCCHHHHHHHHHHcCCeEe-----CCHHH
Confidence 22 2222 2222 4799999988776633322 22334447888654 67776
Q ss_pred HHHHHHHH
Q 014512 411 ICKQAIEC 418 (423)
Q Consensus 411 av~~~v~~ 418 (423)
....+.+.
T Consensus 287 l~~~~~~~ 294 (297)
T 2yv2_A 287 VPELVRKA 294 (297)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 72
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=96.60 E-value=0.0063 Score=58.77 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=58.5
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccC-CCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLT-SCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg-~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
+..+++|++. |||+| ++..+.+ .+++.+..++.+ ++|+|+||..-.|+. ..-||.+..+.++..
T Consensus 100 ~~~~~~l~~~-----gi~~P--~~~~~~~--~~~~~~~~~~~~~~~P~vvKP~~g~g~~-~s~gv~~v~~~~~l~----- 164 (324)
T 1z2n_X 100 EEINALLIKN-----NIPIP--NSFSVKS--KEEVIQLLQSKQLILPFIVKPENAQGTF-NAHQMKIVLEQEGID----- 164 (324)
T ss_dssp HHHHHHHHHT-----TCCCS--CEEEESS--HHHHHHHHHTTCSCSSEEEEESBCSSSS-GGGEEEEECSGGGGT-----
T ss_pred HHHHHHHHHC-----CCCCC--CEEEeCC--HHHHHHHHHHcCCCCCEEEeeCCCCCCc-cceeeEEEeCHHHHh-----
Confidence 4568889998 99999 8888866 467766665532 279999998744431 123787777755422
Q ss_pred HhcccchhccCCcceeEEEEEeecCC-CceEEEEEE
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPH-NEEFYLNIV 122 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~-~~E~ylgi~ 122 (423)
. . . ..++||++++. +.|+-+.+.
T Consensus 165 ---~-~---~-----~~~lvqe~i~~~g~~~~v~v~ 188 (324)
T 1z2n_X 165 ---D-I---H-----FPCLCQHYINHNNKIVKVFCI 188 (324)
T ss_dssp ---T-C---C-----SSEEEEECCCCTTCEEEEEEE
T ss_pred ---h-c---C-----CCEEEEEccCCCCcEEEEEEE
Confidence 0 1 1 34899999985 577777654
No 73
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.012 Score=56.99 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=80.7
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-GEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~-~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+||+++-.|+++...+|.+... |--...++-+|+++.. -.+.+.++.+.+ ||++++|++.. .+|-. ..
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~g~~--~~ 221 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKA--GFGVSTCVGIGGDPIVGLRYKEVLDLFEK----DDETEAIVMIGEIGGGA--EE 221 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEEESSSSH--HH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCeEEEEeeCCCCCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCCH--HH
Confidence 599999999999999999999886 4346778999999842 346677887777 99999998888 55432 22
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHH----------------HHHhhhhhcCCceeecCCCCCHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLA----------------KMRALAEEIGLPIEVYGPEATMTG 410 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~----------------~l~~~~~~~Gip~~~~g~~~t~~~ 410 (423)
-+ . +.+++ .+||||+...|.+...+++ ....+.+++|+... +|++|
T Consensus 222 ~~---~---~~~~~-------~~KPVv~~k~G~~~~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~~-----~~~~e 283 (294)
T 2yv1_A 222 EA---A---KFIEK-------MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVA-----KNISD 283 (294)
T ss_dssp HH---H---HHHTT-------CSSCEEEEEECC-------------------CCHHHHHHHHHHHTCEEC-----SSTTH
T ss_pred HH---H---HHHHh-------CCCCEEEEEecCCCCccccCCchhhhccCCCCCHHHHHHHHHHCCCeEe-----CCHHH
Confidence 12 1 11222 3699999877766522222 22334447888653 67766
Q ss_pred HHHHHHHH
Q 014512 411 ICKQAIEC 418 (423)
Q Consensus 411 av~~~v~~ 418 (423)
....+.++
T Consensus 284 l~~~~~~~ 291 (294)
T 2yv1_A 284 IPKLLAGI 291 (294)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555444
No 74
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=96.15 E-value=0.015 Score=56.18 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=81.9
Q ss_pred CCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchHH
Q 014512 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~-~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~~ 346 (423)
.|+||+++-.|+++...+|.+... |--...++-+||++. .-.+.+.++.+.+ ||++++|++.. .+|-. .+
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~l~~----D~~t~~I~l~~E~~~~~--~~ 215 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDY--GFGQSTCVGIGGDPIPGSNFIDILEMFEK----DPQTEAIVMIGEIGGSA--EE 215 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSSSH--HH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhc--CCCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCCH--HH
Confidence 599999999998988889998875 334567888899884 2356678888777 99999998888 55532 33
Q ss_pred HHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH----------------HHHHHHhhhhhcCCceeecCCCCCHHH
Q 014512 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR----------------GLAKMRALAEEIGLPIEVYGPEATMTG 410 (423)
Q Consensus 347 vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~----------------a~~~l~~~~~~~Gip~~~~g~~~t~~~ 410 (423)
-+ ..++++ . .+||||+...|.+... .-+....+.+++|+... +|++|
T Consensus 216 ~~---~~~~~~----~-----~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~~-----~~~~e 278 (288)
T 2nu8_A 216 EA---AAYIKE----H-----VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTV-----RSLAD 278 (288)
T ss_dssp HH---HHHHHH----H-----CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEEC-----SSGGG
T ss_pred HH---HHHHHh----c-----CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCeEe-----CCHHH
Confidence 33 333333 2 4799998866544311 11122233338898654 67776
Q ss_pred HHHHHHH
Q 014512 411 ICKQAIE 417 (423)
Q Consensus 411 av~~~v~ 417 (423)
....+.+
T Consensus 279 l~~~~~~ 285 (288)
T 2nu8_A 279 IGEALKT 285 (288)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 75
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=95.98 E-value=0.003 Score=62.04 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=44.0
Q ss_pred HHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcc
Q 014512 12 KRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGK 91 (423)
Q Consensus 12 k~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (423)
+++|++. |||+| +.+ . . +++ +++ +|++|||....||| |+.+..| +|+..+++++
T Consensus 103 ~~~l~~~-----Gip~P--~~~--~-~--ee~-----~i~-~PviVKp~~g~ggk----G~~~v~~-eel~~~~~~~--- 156 (320)
T 2pbz_A 103 DKALEGA-----GIPRV--EVV--E-P--EDA-----KPD-ELYFVRIEGPRGGS----GHFIVEG-SELEERLSTL--- 156 (320)
T ss_dssp HHHHHHH-----TCCBC--CBC--C-S--CCC-----CSS-CCEEEECC----------------C-EECSCCCC-----
T ss_pred HHHHHHC-----CcCCC--Cee--C-H--hHc-----CcC-CcEEEEECCCCCCC----CEEEECh-HHHHHHHHhc---
Confidence 5789998 99999 544 1 2 333 466 79999998765666 7888877 7764322211
Q ss_pred cchhccCCcceeEEEEEeecCCCceEEEEEEEeCC
Q 014512 92 EMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERL 126 (423)
Q Consensus 92 ~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~ 126 (423)
. ..++||++++ +.+++..+..++.
T Consensus 157 --------~--~~~IiEEfI~-g~~~~~~~f~~~~ 180 (320)
T 2pbz_A 157 --------E--EPYRVERFIP-GVYLYVHFFYSPI 180 (320)
T ss_dssp ------------CCEEEECCC-SCEEEEEEEEETT
T ss_pred --------C--CCEEEEeeec-eEecceeEEeccc
Confidence 0 2479999999 6777766677765
No 76
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=95.96 E-value=0.0096 Score=58.63 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=52.7
Q ss_pred HHHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 8 EYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
-+..|++|+++ |||+| .. ..+| +|+||||....|+| ||.+..|.++...
T Consensus 104 K~~~k~~l~~~-----gip~~--~~---------------~~ig-~P~vvKp~~g~g~~----gv~~v~~~~~~~~---- 152 (363)
T 4ffl_A 104 KKKSKDYFKSI-----GVPTP--QD---------------RPSK-PPYFVKPPCESSSV----GARIIYDDKDLEG---- 152 (363)
T ss_dssp HHHHHHHHHHT-----TCCCC--CB---------------SCSS-SCEEEECSSCCTTT----TCEEEC------C----
T ss_pred HHHHHHHHHhc-----CCCCC--Cc---------------eecC-CCEEEEECCCCCCc----CeEEeccHHHhhh----
Confidence 45678999999 99888 32 1245 89999998766665 7888877665321
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEeCCCCee
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSERLGCSV 130 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~~~p~i 130 (423)
....+++|++++ +.|+-+.+..|..+.++
T Consensus 153 -------------~~~~~~~ee~i~-g~e~sv~~~~d~~~~~~ 181 (363)
T 4ffl_A 153 -------------LEPDTLVEEYVE-GEVVSLEVVGDGSHFAV 181 (363)
T ss_dssp -------------CCTTCEEEECCC-SEEEEEEEEEESSCEEE
T ss_pred -------------hccchhhhhhcc-CcEEEEEEEEECCeEEE
Confidence 013368999997 78999999998765443
No 77
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=95.82 E-value=0.03 Score=54.62 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHchhCCCCC---ccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 11 SKRLLKEHFQRLSGR---ELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 11 ak~lL~~y~~~~~GI---~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
...+|++. |+ |+| +.....+ ..+ ..+.+| +|+|+|+-.-+.|| ||.+..|.+++.+..+.
T Consensus 121 ~~~~l~~~-----gi~~~P~~--~~~~~~~--~~~---~~~~~g-~PvVvK~~~Gs~G~----GV~lv~~~~~~~~~~~~ 183 (309)
T 1i7n_A 121 MVAIFKTL-----GGEKFPLI--EQTYYPN--HRE---MLTLPT-FPVVVKIGHAHSGM----GKVKVENHYDFQDIASV 183 (309)
T ss_dssp HHHHHHHH-----CTTTSCBC--CCEEESS--GGG---GSSCCC-SSEEEEESSCSTTT----TEEEECSHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCCCCCC--CEEeeCC--hhh---hhhccC-CCEEEEeCCCCcee----CeEEECCHHHHHHHHHH
Confidence 45677787 88 644 3333333 233 345666 79999987765666 89999999988877765
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
+... + ..+++||+++.++.+-+.+.-+
T Consensus 184 ~~~~-----~-----~~~~vQefI~~g~DiRv~VvGg 210 (309)
T 1i7n_A 184 VALT-----Q-----TYATAEPFIDAKYDIRVQKIGN 210 (309)
T ss_dssp HHHH-----T-----CCEEEEECCCEEEEEEEEEETT
T ss_pred Hhcc-----C-----CeEEEEeecCCCceEEEEEECC
Confidence 4321 1 3478999999767777766633
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=95.49 E-value=0.055 Score=59.39 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=83.7
Q ss_pred CCCcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCcEEEEEe-cCCCcchH
Q 014512 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEGEVLQYARVVIDCATADPDGRKRALVI-GGGIANFT 345 (423)
Q Consensus 268 l~g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a-~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-~ggi~~~~ 345 (423)
..|+||+++-.|+++...+|.+...|. -..-++-+||++ ..-.+.+.++.+.+ ||++++|++.. .+|- .+.
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~g~--G~S~~VsiGnd~~~d~~~~D~L~~l~~----Dp~T~~Ivly~Ei~g~-~f~ 725 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRTTD--GVYEGVAIGGDRYPGSTFMDHVLRYQD----TPGVKMIVVLGEIGGT-EEY 725 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSS--CEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSSS-HHH
T ss_pred CCCcEEEEechhHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCCHHHHHHHHhh----CCCCCEEEEEEecCch-HHH
Confidence 369999999999999999999988643 346788899985 23346678887777 99999999888 6653 333
Q ss_pred HHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH---HH----------------HHHHhhhhhcCCceeecCCCC
Q 014512 346 DVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR---GL----------------AKMRALAEEIGLPIEVYGPEA 406 (423)
Q Consensus 346 ~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~---a~----------------~~l~~~~~~~Gip~~~~g~~~ 406 (423)
++| +.+++.. .+||||+...|.++.. ++ +....+.+++|+... +
T Consensus 726 ~aA-------~~~~~~~-----~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi~v-----~ 788 (829)
T 3pff_A 726 KIC-------RGIKEGR-----LTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVP-----R 788 (829)
T ss_dssp HHH-------HHHHTTS-----CCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCBCC-----S
T ss_pred HHH-------HHHHhcc-----CCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCeEc-----C
Confidence 333 2333321 4799999877765541 11 133444458998653 5
Q ss_pred CHHHHHHHHHH
Q 014512 407 TMTGICKQAIE 417 (423)
Q Consensus 407 t~~~av~~~v~ 417 (423)
|++|....+-+
T Consensus 789 ~~~el~~~~~~ 799 (829)
T 3pff_A 789 SFDELGEIIQS 799 (829)
T ss_dssp SGGGHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66655544433
No 79
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=95.20 E-value=0.06 Score=53.25 Aligned_cols=87 Identities=10% Similarity=0.002 Sum_probs=57.6
Q ss_pred HHHHHHHchhCCCCC---ccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 11 SKRLLKEHFQRLSGR---ELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 11 ak~lL~~y~~~~~GI---~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
...+|++. |+ |+| +.....+. .+ ..+.+| +|+|+|+-.-+.|| ||.+..|.+++.+..+.
T Consensus 138 ~l~~l~~~-----gi~~~P~~--~~t~~~~~--~~---~~~~~g-~PvVvK~~~Gs~G~----GV~lve~~~~~~~~~~~ 200 (344)
T 2p0a_A 138 LIKIFHSL-----GPEKFPLV--EQTFFPNH--KP---MVTAPH-FPVVVKLGHAHAGM----GKIKVENQLDFQDITSV 200 (344)
T ss_dssp HHHHHHHH-----CTTTSCBC--CCEEESSS--TT---CCCCSS-SSEEEEESSCCTTT----TEEEECSHHHHHHHHHH
T ss_pred HHHHHHHC-----CCCCCCCC--CEEecCch--hh---hhhccC-CCEEEEeCCCCcee----CeEEECCHHHHHHHHHH
Confidence 45667777 88 644 33333332 23 345566 79999987766666 89999999988877655
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
+... . ..+++||+++.++.+-+.+.-+
T Consensus 201 ~~~~-----~-----~~~~vQefI~~g~DiRv~VVGg 227 (344)
T 2p0a_A 201 VAMA-----K-----TYATTEAFIDSKYDIRIQKIGS 227 (344)
T ss_dssp HHHH-----T-----CCEEEEECCCEEEEEEEEEETT
T ss_pred Hhcc-----C-----CeEEEEeccCCCccEEEEEECC
Confidence 4321 1 3478999999767777766533
No 80
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=94.85 E-value=0.14 Score=52.47 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=65.0
Q ss_pred CcEEEEEcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHh
Q 014512 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAA 349 (423)
Q Consensus 270 g~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa 349 (423)
|+||+++-.|+++...+|.+... |--...++-+|++++. .+.+.++.+.+ ||++++|++..=+ +.+.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~--g~G~s~~vs~G~~~~~-~~~d~l~~~~~----D~~t~~I~l~~E~-i~~~----- 216 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKE--DIGFSKFISVGNMADV-DFAELMEYLAD----TEEDKAIALYIEG-VRNG----- 216 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHT--TCEESEEEECTTCCSS-CHHHHHHHHTT----CSSCCEEEEEESC-CSCH-----
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc--CCCeeEEEECCCcCCC-CHHHHHHHHhc----CCCCCEEEEEEec-CCCH-----
Confidence 99999999999999999999886 4446788999999864 46677887776 9999998887721 1122
Q ss_pred hHHHHHHHHHHhhhhhhccceeEEEEeCCCCHH
Q 014512 350 TFNGIIQALKEKESKLKAARMHLYVRRGGPNYQ 382 (423)
Q Consensus 350 ~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~ 382 (423)
+...++++... .+||||+...|.+..
T Consensus 217 --~~f~~~a~~~~-----~~KPVv~~k~G~~~~ 242 (457)
T 2csu_A 217 --KKFMEVAKRVT-----KKKPIIALKAGKSES 242 (457)
T ss_dssp --HHHHHHHHHHH-----HHSCEEEEECC----
T ss_pred --HHHHHHHHHhc-----CCCCEEEEEcCCCcc
Confidence 22333344332 269999987776544
No 81
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=94.72 E-value=0.073 Score=53.98 Aligned_cols=87 Identities=17% Similarity=0.065 Sum_probs=57.4
Q ss_pred HHHHHHHchhCCCCC---ccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHH
Q 014512 11 SKRLLKEHFQRLSGR---ELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKE 87 (423)
Q Consensus 11 ak~lL~~y~~~~~GI---~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~ 87 (423)
...+|++. |+ |++ +.....+ ..+ ..+.+| +|+|+|+-.-+.|| ||.+..|.+++....+.
T Consensus 233 ~l~ll~~~-----gi~~iP~t--~~t~~~~--~~~---~i~~~g-~PvVvKp~~GS~G~----GV~lve~~~~l~~ii~~ 295 (422)
T 1pk8_A 233 MVRLHKKL-----GTEEFPLI--DQTFYPN--HKE---MLSSTT-YPVVVKMGHAHSGM----GKVKVDNQHDFQDIASV 295 (422)
T ss_dssp HHHHHHHH-----CTTTSCBC--CCEEESS--GGG---CCCCSS-SSEEEEESSCCTTT----TEEEECSHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCCCCCC--ceEecCc--hhh---hhhccC-CCEEEEeCCCCcee----CeEEeCCHHHHHHHHHH
Confidence 35567777 88 533 3333332 233 445565 89999987766666 89999999988877765
Q ss_pred HhcccchhccCCcceeEEEEEeecCCCceEEEEEEEe
Q 014512 88 CLGKEMEMSECKGPITTFIIEPFIPHNEEFYLNIVSE 124 (423)
Q Consensus 88 ~l~~~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D 124 (423)
+... . ..+++||+++.++.+-+.+.-|
T Consensus 296 ~~~~-----~-----~~~~vQEfI~~g~DIRv~VVGg 322 (422)
T 1pk8_A 296 VALT-----K-----TYATAEPFIDAKYDVRVQKIGQ 322 (422)
T ss_dssp HHHH-----T-----SCEEEEECCCEEEEEEEEEETT
T ss_pred Hhcc-----C-----ceEEEEeecCCCceEEEEEECC
Confidence 4321 1 3478999999767777766633
No 82
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=94.34 E-value=0.06 Score=51.04 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=51.8
Q ss_pred ccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeC-CHHHHHHHHHHHhcccchhccCCcceeE
Q 014512 26 ELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNL-DLAQAATFVKECLGKEMEMSECKGPITT 104 (423)
Q Consensus 26 ~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~-s~eea~~~a~~~l~~~~~~~g~~~~v~~ 104 (423)
|+| ++..+.+ .+++.+..++++ |+|+||..-.+|+ ||.+.. +.+++..+.+.+... + -..
T Consensus 134 ~~P--~t~~~~~--~~~~~~~~~~~~--p~vvKP~~g~~g~----Gv~~v~~~~~~l~~~~~~~~~~-----~----~~~ 194 (316)
T 1gsa_A 134 LTP--ETLVTRN--KAQLKAFWEKHS--DIILKPLDGMGGA----SIFRVKEGDPNLGVIAETLTEH-----G----TRY 194 (316)
T ss_dssp TSC--CEEEESC--HHHHHHHHHHHS--SEEEECSSCCTTT----TCEEECTTCTTHHHHHHHHTTT-----T----TSC
T ss_pred cCC--CeEEeCC--HHHHHHHHHHcC--CEEEEECCCCCcc----cEEEecCChHHHHHHHHHHHhc-----C----Cce
Confidence 556 7777765 577777777774 9999998766666 677775 777776665543211 1 134
Q ss_pred EEEEeecCC--CceEEEEE
Q 014512 105 FIIEPFIPH--NEEFYLNI 121 (423)
Q Consensus 105 vlVe~~~~~--~~E~ylgi 121 (423)
++||++++. +.|+-+-+
T Consensus 195 ~lvqe~i~~~~~~~~~v~~ 213 (316)
T 1gsa_A 195 CMAQNYLPAIKDGDKRVLV 213 (316)
T ss_dssp EEEEECCGGGGGCEEEEEE
T ss_pred EEEecccCCCCCCCEEEEE
Confidence 899999996 46665544
No 83
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=94.33 E-value=0.062 Score=53.13 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=51.5
Q ss_pred CCCCccCCCceEEecCCCHHHHHHhh--cccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcccchhccCC
Q 014512 22 LSGRELPIKSAQVIESTNFDELAQKE--PWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECK 99 (423)
Q Consensus 22 ~~GI~vp~~~~~~~~~~~~~ea~~~a--~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~~~~~~g~~ 99 (423)
.+|||+| ++.++.+.+++++.+.. ..++ +|+|+||..-.|.. +-||.+..+.++... + .
T Consensus 133 ~~gIp~P--~t~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~~g~Gs~--s~~v~~v~~~~~l~~---------~---~-- 193 (346)
T 2q7d_A 133 DDRICSP--PFMELTSLCGDDTMRLLEKNGLT-FPFICKTRVAHGTN--SHEMAIVFNQEGLNA---------I---Q-- 193 (346)
T ss_dssp BTTEECC--CEEEECSCCCTTHHHHHHHTTCC-SSEEEECSBCSSTT--CCEEEEECSGGGTTC----------------
T ss_pred CCCCCCC--CEEEEeCCCHHHHHHHHHhcCCC-CCEEEEecCCCcce--eeeeEEecCHHHHHh---------c---C--
Confidence 3499999 88888653123444433 2455 89999997643322 447888877655331 1 1
Q ss_pred cceeEEEEEeecCC-CceEEEEEEEe
Q 014512 100 GPITTFIIEPFIPH-NEEFYLNIVSE 124 (423)
Q Consensus 100 ~~v~~vlVe~~~~~-~~E~ylgi~~D 124 (423)
..++|||++++ +.|+-+.+.-|
T Consensus 194 ---~~~lvQefI~~~G~dirv~VvG~ 216 (346)
T 2q7d_A 194 ---PPCVVQNFINHNAVLYKVFVVGE 216 (346)
T ss_dssp ---CCEEEEECCCCTTEEEEEEEETT
T ss_pred ---CCEEEEEeeCCCCeEEEEEEECC
Confidence 23899999985 67888777633
No 84
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=92.20 E-value=0.2 Score=48.17 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=44.6
Q ss_pred HHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhcccCCCcEEEeeccccCcccccCeeEEeCCHHHHHHHHHHHhcc
Q 014512 12 KRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGK 91 (423)
Q Consensus 12 k~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~a~~~l~~ 91 (423)
|..++++ .+. |||+| ++.+ ..++ +|+|+||..-.|++ ||.+..+
T Consensus 111 K~~~~~~-l~~-Gip~p--~~~~-------------~~~~-~P~vvKP~~g~gs~----Gv~~v~~-------------- 154 (305)
T 3df7_A 111 KWELYKK-LRG-EVQVP--QTSL-------------RPLD-CKFIIKPRTACAGE----GIGFSDE-------------- 154 (305)
T ss_dssp HHHHHHH-HTT-TSCCC--CEES-------------SCCS-SSEEEEESSCC--------CBCCSS--------------
T ss_pred HHHHHHH-HHh-CCCCC--CEec-------------ccCC-CCEEEEeCCCCCCC----CEEEEec--------------
Confidence 5555554 444 99998 5543 1345 79999998765555 6666655
Q ss_pred cchhccCCcceeEEEEEeecCCCceEEEEEEEeC
Q 014512 92 EMEMSECKGPITTFIIEPFIPHNEEFYLNIVSER 125 (423)
Q Consensus 92 ~~~~~g~~~~v~~vlVe~~~~~~~E~ylgi~~D~ 125 (423)
. . ..++||++++ +.|+-+.+..+.
T Consensus 155 -~---~-----~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 155 -V---P-----DGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp -C---C-----TTEEEEECCC-SEEEEEEEEESS
T ss_pred -C---C-----CCEEEEeccC-CcEEEEEEEeCC
Confidence 1 1 2489999999 899999888753
No 85
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=85.99 E-value=4.9 Score=34.80 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHH
Q 014512 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~ 359 (423)
|+-++ ...|...|+ +-+++|.+.+++.+.++++ ..+.+.|.+-... +..-+.. ..+++.++
T Consensus 34 G~~~v-a~~l~~~G~-----eVi~lG~~~p~e~lv~aa~--------~~~~diV~lS~~~--~~~~~~~---~~~i~~L~ 94 (161)
T 2yxb_A 34 GAKVV-ARALRDAGF-----EVVYTGLRQTPEQVAMAAV--------QEDVDVIGVSILN--GAHLHLM---KRLMAKLR 94 (161)
T ss_dssp HHHHH-HHHHHHTTC-----EEECCCSBCCHHHHHHHHH--------HTTCSEEEEEESS--SCHHHHH---HHHHHHHH
T ss_pred HHHHH-HHHHHHCCC-----EEEECCCCCCHHHHHHHHH--------hcCCCEEEEEeec--hhhHHHH---HHHHHHHH
Confidence 55554 456666433 4578899999998766655 2344555554422 2223333 77888888
Q ss_pred HhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 360 EKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 360 ~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+.+. .+.| +.+||.-..+-...++ +.|+.- +|++.+++++++..+.++.+.
T Consensus 95 ~~g~----~~i~--v~vGG~~~~~~~~~l~----~~G~d~-v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 95 ELGA----DDIP--VVLGGTIPIPDLEPLR----SLGIRE-IFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp HTTC----TTSC--EEEEECCCHHHHHHHH----HTTCCE-EECTTCCHHHHHHHHHHHHHH
T ss_pred hcCC----CCCE--EEEeCCCchhcHHHHH----HCCCcE-EECCCCCHHHHHHHHHHHHHH
Confidence 7531 1344 4457765555445566 689873 455667778899888777653
No 86
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=77.63 E-value=22 Score=33.73 Aligned_cols=109 Identities=11% Similarity=0.115 Sum_probs=72.2
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 78 (294)
T 2ehh_A 10 ITPFK-EGEVDYEALGNLIEFHVD-----NGTDAILVCGTTGESPTLTFEE-HEKVIEFAVKRAA----GRIKVIAGTGG 78 (294)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHT-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 35677 789999999999998874 6899998876333221111110 1455565555432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-+++.+..+.+. ++|. |.| + -.|.++.++.+-..+.++
T Consensus 79 ~~t~~ai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a~ 125 (294)
T 2ehh_A 79 NATHEAVHLTAHAK-EVGADGALVVVPYY-N--KPTQRGLYEHFKTVAQEV 125 (294)
T ss_dssp SCHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHhc
Confidence 99999988776543 4563 333 3 257888888888777653
No 87
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=76.02 E-value=20 Score=34.27 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=74.0
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.|=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~ 93 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVD-----QGCDGLVVSGTTGESPTTTDGE-KIELLRAVLEAVG----DRARVIAGAGT 93 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCC
Confidence 466766789999999999998885 5899999886333221111110 1456666555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++-+++.+..+.+. +.|. |.| | ..|.++.++.+-.++.+
T Consensus 94 ~~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a 139 (304)
T 3l21_A 94 YDTAHSIRLAKACA-AEGAHGLLVVTPYY-S--KPPQRGLQAHFTAVADA 139 (304)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEECCCS-S--CCCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 99999988887543 4563 443 3 25778888888777765
No 88
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=74.76 E-value=22 Score=33.63 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=72.4
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 78 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIE-----NGVSGIVAVGTTGESPTLSHEE-HKKVIEKVVDVVN----GRVQVIAGAGS 78 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 35677 899999999999998885 5899998876333222111110 1455555555432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-+++.+..+.+. ++|. |.| + -.|.++.++.+-..+.++
T Consensus 79 ~~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~ia~a~ 125 (289)
T 2yxg_A 79 NCTEEAIELSVFAE-DVGADAVLSITPYY-N--KPTQEGLRKHFGKVAESI 125 (289)
T ss_dssp SSHHHHHHHHHHHH-HHTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHhc
Confidence 99999988776543 4552 333 3 257788888887777653
No 89
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=73.55 E-value=25 Score=33.84 Aligned_cols=112 Identities=9% Similarity=0.049 Sum_probs=72.6
Q ss_pred Cceee-ccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC
Q 014512 299 GNYAE-YSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRG 377 (423)
Q Consensus 299 aN~lD-~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~ 377 (423)
--|.| =-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+... .++||++-.|
T Consensus 19 vTPf~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg 88 (318)
T 3qfe_A 19 VTFFDSKTDTLDLASQERYYAYLAR-----SGLTGLVILGTNAEAFLLTREE-RAQLIATARKAVG----PDFPIMAGVG 88 (318)
T ss_dssp CCCEETTTTEECHHHHHHHHHHHHT-----TTCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHC----TTSCEEEECC
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCC
Confidence 35666 6788999999999998874 6899999886433211111110 1445555555432 3699999999
Q ss_pred CCCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 378 GPNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 378 G~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+++-.++.+..+.+. +.|. |.| |..-.|.++.++.+-..+.++
T Consensus 89 ~~~t~~ai~la~~a~-~~Gadavlv~~P~y-~~kp~~~~~l~~~f~~ia~a~ 138 (318)
T 3qfe_A 89 AHSTRQVLEHINDAS-VAGANYVLVLPPAY-FGKATTPPVIKSFFDDVSCQS 138 (318)
T ss_dssp CSSHHHHHHHHHHHH-HHTCSEEEECCCCC----CCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEeCCcc-cCCCCCHHHHHHHHHHHHhhC
Confidence 999999988887544 4563 323 321136788888888877653
No 90
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=72.86 E-value=26 Score=33.23 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=73.2
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 85 (297)
T 3flu_A 16 ITPMNQDGSIHYEQLRDLIDWHIE-----NGTDGIVAVGTTGESATLSVEE-HTAVIEAVVKHVA----KRVPVIAGTGA 85 (297)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred eccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 355666789999999999998875 6899999876333221111110 1445555555432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++.+++.+..+.+. ++|. |.| | ..|.++.++.+-.++.++
T Consensus 86 ~~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~va~a~ 132 (297)
T 3flu_A 86 NNTVEAIALSQAAE-KAGADYTLSVVPYY-N--KPSQEGIYQHFKTIAEAT 132 (297)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 99999988887543 4563 333 3 257788888887777653
No 91
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=72.80 E-value=18 Score=30.22 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=66.7
Q ss_pred cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHH
Q 014512 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~ 359 (423)
|.-++ ...+...|+ +-+|+|.+.+++.+.++++- .+.+.+.+.... +...... +.+++.++
T Consensus 19 G~~~v-~~~l~~~G~-----~Vi~lG~~~p~e~~v~~a~~--------~~~d~v~lS~~~--~~~~~~~---~~~i~~l~ 79 (137)
T 1ccw_A 19 GNKIL-DHAFTNAGF-----NVVNIGVLSPQELFIKAAIE--------TKADAILVSSLY--GQGEIDC---KGLRQKCD 79 (137)
T ss_dssp HHHHH-HHHHHHTTC-----EEEEEEEEECHHHHHHHHHH--------HTCSEEEEEECS--STHHHHH---TTHHHHHH
T ss_pred HHHHH-HHHHHHCCC-----EEEECCCCCCHHHHHHHHHh--------cCCCEEEEEecC--cCcHHHH---HHHHHHHH
Confidence 55443 356666433 55889999999988776662 234445544422 2223333 67788888
Q ss_pred HhhhhhhccceeEEEEeCCCC------HHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 360 EKESKLKAARMHLYVRRGGPN------YQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 360 ~~~~~~~~~~~pivvrl~G~~------~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+.+. .+.+| .+||.- .++-.+.++ +.|+.- +|++-++..++++..++...
T Consensus 80 ~~g~----~~i~v--~vGG~~~~~~~~~~~~~~~~~----~~G~d~-~~~~g~~~~~~~~~l~~~~~ 135 (137)
T 1ccw_A 80 EAGL----EGILL--YVGGNIVVGKQHWPDVEKRFK----DMGYDR-VYAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp HTTC----TTCEE--EEEESCSSSSCCHHHHHHHHH----HTTCSE-ECCTTCCHHHHHHHHHHHHT
T ss_pred hcCC----CCCEE--EEECCCcCchHhhhhhHHHHH----HCCCCE-EECCCCCHHHHHHHHHHHhC
Confidence 7641 13444 455532 222244566 789964 56677889999988877653
No 92
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=71.76 E-value=24 Score=33.83 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=73.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.|=.|..+.+.+.+-++.+++ .++++++++-.+|=...-... --+.++++..+... .++||++-.|+
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~-Er~~v~~~~v~~~~----grvpViaGvg~ 101 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQ-----EGTNAIVAVGTTGESATLDVE-EHIQVIRRVVDQVK----GRIPVIAGTGA 101 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSGGGTGGGCCHH-HHHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHH-HHHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 456666789999999999998875 589999987633321111111 01455555555432 35999999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-+++.+..+.+. ++|. |.| | -.|.++.++.+-.++.++
T Consensus 102 ~st~eai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a~ 148 (314)
T 3qze_A 102 NSTREAVALTEAAK-SGGADACLLVTPYY-N--KPTQEGMYQHFRHIAEAV 148 (314)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHhc
Confidence 99999988887543 4563 433 3 257788888888777653
No 93
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=71.28 E-value=23 Score=33.78 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=72.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg~ 90 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLE-----NGVNALIVLGTTGESPTVNEDE-REKLVSRTLEIVD----GKIPVIVGAGT 90 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEcCCC
Confidence 46778 899999999999998885 5899988876322211111110 1455665555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
++-+++.+..+.+. ++|. |.| +. .|.++.++.+-..+.+
T Consensus 91 ~st~~ai~la~~A~-~~Gadavlv~~P~y-~~--~s~~~l~~~f~~va~a 136 (306)
T 1o5k_A 91 NSTEKTLKLVKQAE-KLGANGVLVVTPYY-NK--PTQEGLYQHYKYISER 136 (306)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHH-hcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 99999988877543 4563 333 32 4778888888777765
No 94
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=70.91 E-value=27 Score=32.99 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=72.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 80 (291)
T 3tak_A 11 TPMLKDGGVDWKSLEKLVEWHIE-----QGTNSIVAVGTTGEASTLSMEE-HTQVIKEIIRVAN----KRIPIIAGTGAN 80 (291)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCCC
Confidence 35555688999999999998875 5899998876443221111110 1455565555432 359999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+..++.+..+.+. +.|. |.| | ..|.++.++.+-..+.++
T Consensus 81 ~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 81 STREAIELTKAAK-DLGADAALLVTPYY-N--KPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHhc
Confidence 9999988877543 4563 433 3 257788888887777653
No 95
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=70.86 E-value=23 Score=33.98 Aligned_cols=110 Identities=8% Similarity=0.013 Sum_probs=74.1
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.|=-|..+.+.+.+-++.+++ .++++++++-.+|=...-... --+.++++..+... .++||++-.|+
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gi~v~GtTGE~~~Ls~~-Er~~v~~~~v~~~~----grvpViaGvg~ 102 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLID-----GGVHAIAPLGSTGEGAYLSDP-EWDEVVDFTLKTVA----HRVPTIVSVSD 102 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHH-HHHHHHHHHHHHHT----TSSCBEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHH-HHHHHHHHHHHHhC----CCCcEEEecCC
Confidence 456666789999999999998885 689999987633322111111 01456666555432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++.+++.+..+.+. ++|. |.| | -.|.++.++.+-.++.++
T Consensus 103 ~~t~~ai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a~ 149 (315)
T 3na8_A 103 LTTAKTVRRAQFAE-SLGAEAVMVLPISY-W--KLNEAEVFQHYRAVGEAI 149 (315)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEECCCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 99999988887543 4563 433 3 257788888888877653
No 96
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=70.79 E-value=25 Score=33.79 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=72.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.+++...+... .++||++-.|+
T Consensus 31 vTPf~~dg~iD~~~l~~li~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 100 (315)
T 3si9_A 31 ITPFDDNGAIDEKAFCNFVEWQIT-----QGINGVSPVGTTGESPTLTHEE-HKRIIELCVEQVA----KRVPVVAGAGS 100 (315)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 355655789999999999998885 6899998776333221111110 1445555555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++..++.+..+.+. ++|. |.| | -.|.++.++.+-.++.++
T Consensus 101 ~st~~ai~la~~A~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~va~a~ 147 (315)
T 3si9_A 101 NSTSEAVELAKHAE-KAGADAVLVVTPYY-N--RPNQRGLYTHFSSIAKAI 147 (315)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHcC
Confidence 99999988877543 4563 433 3 257788888887777653
No 97
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=69.67 E-value=43 Score=31.62 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=71.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ +.++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~----~~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 83 (293)
T 1f6k_A 13 VSFNEDGTINEKGLRQIIRHNID----KMKVDGLYVGGSTGENFMLSTEE-KKEIFRIAKDEAK----DQIALIAQVGSV 83 (293)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh----hCCCcEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEecCCC
Confidence 44555688999999999998874 47899998876322211111110 1455555555432 369999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+-+++.+..+.+. ++|. |.| |. .|.++.++.+-..+.++
T Consensus 84 ~t~~ai~la~~a~-~~Gadavlv~~P~y-~~--~~~~~l~~~f~~va~a~ 129 (293)
T 1f6k_A 84 NLKEAVELGKYAT-ELGYDCLSAVTPFY-YK--FSFPEIKHYYDTIIAET 129 (293)
T ss_dssp CHHHHHHHHHHHH-HHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHhC
Confidence 9999988777543 4563 333 32 57788888887777653
No 98
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=68.37 E-value=48 Score=31.47 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc-c--hHHHHhhHHHHHHHHHHhhhhhhccceeEEEEe
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA-N--FTDVAATFNGIIQALKEKESKLKAARMHLYVRR 376 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~-~--~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl 376 (423)
-|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=. . .++= +.++++..+... .++||++-.
T Consensus 26 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~Er----~~v~~~~~~~~~----grvpviaGv 92 (304)
T 3cpr_A 26 TPFTESGDIDIAAGREVAAYLVD-----KGLDSLVLAGTTGESPTTTAAEK----LELLKAVREEVG----DRAKLIAGV 92 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTTTTSCHHHH----HHHHHHHHHHHT----TTSEEEEEC
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHHH----HHHHHHHHHHhC----CCCcEEecC
Confidence 45555688999999999998885 489999887633222 1 1221 455565555432 369999999
Q ss_pred CCCCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 377 GGPNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 377 ~G~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
|+++-+++.+..+.+. ++|. |.| + -.|.++.++.+-..+.++
T Consensus 93 g~~st~~ai~la~~A~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~ia~a~ 141 (304)
T 3cpr_A 93 GTNNTRTSVELAEAAA-SAGADGLLVVTPYY-S--KPSQEGLLAHFGAIAAAT 141 (304)
T ss_dssp CCSCHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHhc
Confidence 9999999988877543 4563 333 2 257788888887777653
No 99
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=67.49 E-value=29 Score=33.07 Aligned_cols=112 Identities=10% Similarity=0.060 Sum_probs=73.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.|=-|..+.+.+.+-++.++ +.++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 23 vTPf~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 92 (307)
T 3s5o_A 23 TTPFTATAEVDYGKLEENLHKLG-----TFPFRGFVVQGSNGEFPFLTSSE-RLEVVSRVRQAMP----KNRLLLAGSGC 92 (307)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHT-----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHTSC----TTSEEEEECCC
T ss_pred EccCCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccccchhhCCHHH-HHHHHHHHHHHcC----CCCcEEEecCC
Confidence 35666678899999988888877 46799999886433211111110 1456666555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-+++.+..+.+. ++|. |.| |.+..|.++.++.+-..+.++
T Consensus 93 ~~t~~ai~la~~A~-~~Gadavlv~~P~y-~~~~~s~~~l~~~f~~ia~a~ 141 (307)
T 3s5o_A 93 ESTQATVEMTVSMA-QVGADAAMVVTPCY-YRGRMSSAALIHHYTKVADLS 141 (307)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCT-TGGGCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCCCc-CCCCCCHHHHHHHHHHHHhhc
Confidence 99999988776543 4563 333 211147788888888877653
No 100
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=67.28 E-value=39 Score=32.21 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=73.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.|=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 86 (309)
T 3fkr_A 17 PTTFADTGDLDLASQKRAVDFMID-----AGSDGLCILANFSEQFAITDDE-RDVLTRTILEHVA----GRVPVIVTTSH 86 (309)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred eCCCCcCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 355666789999999999998885 6899999876333211111110 1445565555432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceee--cCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEV--YGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~--~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-.++.+..+.+. ++|. |.|. | ..|.++.++.+-..+.++
T Consensus 87 ~~t~~ai~la~~A~-~~Gadavlv~~Pyy~~~~--~~s~~~l~~~f~~va~a~ 136 (309)
T 3fkr_A 87 YSTQVCAARSLRAQ-QLGAAMVMAMPPYHGATF--RVPEAQIFEFYARVSDAI 136 (309)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEECCSCBTTTB--CCCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHH-HcCCCEEEEcCCCCccCC--CCCHHHHHHHHHHHHHhc
Confidence 99999988877543 4563 4321 2 257888888888887653
No 101
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=67.27 E-value=46 Score=31.56 Aligned_cols=109 Identities=10% Similarity=0.110 Sum_probs=71.4
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 91 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLID-----NGTTAIVVGGTTGESPTLTSEE-KVALYRHVVSVVD----KRVPVIAGTGSN 91 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCceEEeCCCCC
Confidence 45555688999999999998885 5899988876333221111110 1455555555432 368999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+-+++.+..+.+. ++|. |.| + -.|.++.++.+-.++.++
T Consensus 92 ~t~~ai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a~ 137 (301)
T 1xky_A 92 NTHASIDLTKKAT-EVGVDAVMLVAPYY-N--KPSQEGMYQHFKAIAEST 137 (301)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHhc
Confidence 9999988877543 4563 333 3 257788888887777653
No 102
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=66.99 E-value=32 Score=33.82 Aligned_cols=108 Identities=7% Similarity=0.015 Sum_probs=72.3
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 68 vTPF~~dg~ID~~al~~lv~~li~-----~Gv~Gl~v~GTTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 137 (360)
T 4dpp_A 68 KTPYLPDGRFDLEAYDDLVNIQIQ-----NGAEGVIVGGTTGEGQLMSWDE-HIMLIGHTVNCFG----GSIKVIGNTGS 137 (360)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEecccccChhhCCHHH-HHHHHHHHHHHhC----CCCeEEEecCC
Confidence 567777789999999999998885 6899999876433221111111 1345555554432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHH
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++-+++.+..+.+. ++|. |.| + -.|.++.++.+-..+.
T Consensus 138 ~st~eai~la~~A~-~~Gadavlvv~PyY-~--k~sq~gl~~hf~~IA~ 182 (360)
T 4dpp_A 138 NSTREAIHATEQGF-AVGMHAALHINPYY-G--KTSIEGLIAHFQSVLH 182 (360)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHH
Confidence 99999988877543 4664 433 2 2577888888766654
No 103
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=66.67 E-value=12 Score=34.38 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 307 APNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 307 ~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
..+.+.+.++++.+.+ |+++++|++.+ +||-.. . . +.+-++++..... .++|+++.++|.-..-|
T Consensus 28 ~~~~~~l~~~l~~a~~----d~~v~~ivL~~~s~Gg~~~--~-~---~~i~~~l~~~~~~---~~kPVia~v~g~a~~gG 94 (240)
T 3rst_A 28 GYNHRTFLKNLERAKD----DKTVKGIVLKVNSPGGGVY--E-S---AEIHKKLEEIKKE---TKKPIYVSMGSMAASGG 94 (240)
T ss_dssp CCCHHHHHHHHHHHHH----CTTEEEEEEEEEECCBCHH--H-H---HHHHHHHHHHHHH---HCCCEEEEEEEEEETHH
T ss_pred CcCHHHHHHHHHHHHh----CCCcEEEEEEecCCCCCHH--H-H---HHHHHHHHHHHHh---CCCeEEEEECCeehHhH
Confidence 4567888888888777 99999988876 554221 1 1 3444445544310 26899988777544434
No 104
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=66.42 E-value=42 Score=31.92 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=71.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 90 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQ-----QGIDGLYVGGSTGEAFVQSLSE-REQVLEIVAEEAK----GKIKLIAHVGCV 90 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECeeccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 45555688999999999998885 5899998876332221111110 1455555555432 368999999999
Q ss_pred CHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+-+++.+..+.+. ++|. |=|+|. .|.++.++.+-.++.++
T Consensus 91 ~t~~ai~la~~A~-~~Gadavlv~~P~y~~--~s~~~l~~~f~~va~a~ 136 (303)
T 2wkj_A 91 STAESQQLAASAK-RYGFDAVSAVTPFYYP--FSFEEHCDHYRAIIDSA 136 (303)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEECCCSSC--CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hCCCCEEEecCCCCCC--CCHHHHHHHHHHHHHhC
Confidence 9999988776543 4563 223232 47888888887777653
No 105
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=66.04 E-value=41 Score=32.48 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=72.5
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-... --+.++++..+... .++||++-.|+
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~e-Er~~vi~~~ve~~~----grvpViaGvg~ 112 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDA-----AEVDSVGILGSTGIYMYLTRE-ERRRAIEAAATILR----GRRTLMAGIGA 112 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHH-----HTCSEEEESSTTTTGGGSCHH-HHHHHHHHHHHHHT----TSSEEEEEECC
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHH-HHHHHHHHHHHHhC----CCCcEEEecCC
Confidence 456665789999999999998885 579999887633322111111 01455665555432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-+++.+..+.+. ++|. |=|++ -.|.++.++.+-.++.++
T Consensus 113 ~st~eai~la~~A~-~~Gadavlv~~P~Y~--~~s~~~l~~~f~~VA~a~ 159 (332)
T 2r8w_A 113 LRTDEAVALAKDAE-AAGADALLLAPVSYT--PLTQEEAYHHFAAVAGAT 159 (332)
T ss_dssp SSHHHHHHHHHHHH-HHTCSEEEECCCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 99999988776543 4553 22223 257788888887777653
No 106
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=65.86 E-value=30 Score=33.09 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=73.2
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-... --+.++++..+... .++||++-.|+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~-Er~~v~~~~~~~~~----grvpViaGvg~ 85 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLA-----HHTDGILLAGTTAESPTLTHD-EELELFAAVQKVVN----GRVPLIAGVGT 85 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHH-----TTCCCEEESSTTTTGGGSCHH-HHHHHHHHHHHHSC----SSSCEEEECCC
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHH-HHHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 456666788999999999998875 689999988643321111111 01456666555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC--------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL--------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi--------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-.++.+..+.+.+ .|. |.| | -.|.++.++.+-.++.++
T Consensus 86 ~~t~~ai~la~~A~~-~Ga~davlv~~P~y-~--~~s~~~l~~~f~~va~a~ 133 (311)
T 3h5d_A 86 NDTRDSIEFVKEVAE-FGGFAAGLAIVPYY-N--KPSQEGMYQHFKAIADAS 133 (311)
T ss_dssp SSHHHHHHHHHHHHH-SCCCSEEEEECCCS-S--CCCHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHh-cCCCcEEEEcCCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 999999888876543 442 433 3 257788888887777653
No 107
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=65.30 E-value=51 Score=31.11 Aligned_cols=110 Identities=10% Similarity=0.029 Sum_probs=72.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 82 (294)
T 3b4u_A 13 TPFKTDGTVDIDAMIAHARRCLS-----NGCDSVTLFGTTGEGCSVGSRE-RQAILSSFIAAGI----APSRIVTGVLVD 82 (294)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHTTC----CGGGEEEEECCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCc
Confidence 34444688999999999998885 5899998876333211111110 1456666555432 368999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+-+++.+..+.+. ++|. |.| |. ..|.++.++.+-..+.++
T Consensus 83 ~t~~ai~la~~A~-~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a~ 129 (294)
T 3b4u_A 83 SIEDAADQSAEAL-NAGARNILLAPPSY-FK-NVSDDGLFAWFSAVFSKI 129 (294)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEECCCCS-SC-SCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-hcCCCEEEEcCCcC-CC-CCCHHHHHHHHHHHHHhc
Confidence 9999988877543 4563 333 32 137788888888877653
No 108
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=63.43 E-value=40 Score=31.97 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=67.7
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhcc-ceeEEEEeCCCCHHH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAA-RMHLYVRRGGPNYQR 383 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~-~~pivvrl~G~~~~~ 383 (423)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... . ++||++-.|+++-.+
T Consensus 22 dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----g~rvpviaGvg~~~t~~ 91 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIE-----NGIDAVVPVGTTGESATLTHEE-HRTCIEIAVETCK----GTKVKVLAGAGSNATHE 91 (301)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCCEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEEECCCSSHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCCeEEEeCCCCCHHH
Confidence 678888988888888874 6789988776333211111110 1445555555432 3 589999999999999
Q ss_pred HHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 384 GLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 384 a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+.+..+.+. +.|. |.| | -.|.++.++.+-.++.++
T Consensus 92 ai~la~~a~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a~ 133 (301)
T 3m5v_A 92 AVGLAKFAK-EHGADGILSVAPYY-N--KPTQQGLYEHYKAIAQSV 133 (301)
T ss_dssp HHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 988877543 4563 433 3 257788888887777653
No 109
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=62.48 E-value=43 Score=32.54 Aligned_cols=110 Identities=10% Similarity=0.107 Sum_probs=71.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG 378 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G 378 (423)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|+
T Consensus 40 vTPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 109 (343)
T 2v9d_A 40 STIFTADGQLDKPGTAALIDDLIK-----AGVDGLFFLGSGGEFSQLGAEE-RKAIARFAIDHVD----RRVPVLIGTGG 109 (343)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCS
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 355555689999999999998885 5789988876333211111110 1455555555432 36899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 379 PNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
++-+++.+..+.+. ++|. |.| |. .|.++.++.+-.++.++
T Consensus 110 ~st~eai~la~~A~-~~Gadavlv~~P~Y-~~--~s~~~l~~~f~~VA~a~ 156 (343)
T 2v9d_A 110 TNARETIELSQHAQ-QAGADGIVVINPYY-WK--VSEANLIRYFEQVADSV 156 (343)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEECCSS-SC--CCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHhc
Confidence 99999988776543 4552 333 32 47788888887777653
No 110
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=60.41 E-value=51 Score=31.48 Aligned_cols=108 Identities=14% Similarity=0.057 Sum_probs=71.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+.. . ++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Lt~~E-r~~v~~~~v~~~-g----rvpViaGvg~~ 86 (313)
T 3dz1_A 18 TPFHDDGKIDDVSIDRLTDFYAE-----VGCEGVTVLGILGEAPKLDAAE-AEAVATRFIKRA-K----SMQVIVGVSAP 86 (313)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESTGGGTGGGSCHHH-HHHHHHHHHHHC-T----TSEEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEeCccCcChhhCCHHH-HHHHHHHHHHHc-C----CCcEEEecCCC
Confidence 45655689999999999998885 6899998876333211111110 134555555543 1 59999999999
Q ss_pred CHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+-.++.+..+.+. ++|. |-| | ..|.++.++.+-.++.++
T Consensus 87 ~t~~ai~la~~A~-~~Gadavlv~~P~-~--~~s~~~l~~~f~~va~a~ 131 (313)
T 3dz1_A 87 GFAAMRRLARLSM-DAGAAGVMIAPPP-S--LRTDEQITTYFRQATEAI 131 (313)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEECCCT-T--CCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 9999988876543 4563 223 2 257888888888887653
No 111
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=58.94 E-value=53 Score=30.96 Aligned_cols=108 Identities=7% Similarity=0.086 Sum_probs=70.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 80 (292)
T 2ojp_A 11 TPMDEKGNVCRASLKKLIDYHVA-----SGTSAIVSVGTTGESATLNHDE-HADVVMMTLDLAD----GRIPVIAGTGAN 80 (292)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCc
Confidence 34444688999999999998885 4789988876333221111110 1455565555432 368999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+-.++.+..+.+. ++|. |.| +. .|.++.++.+-..+.+
T Consensus 81 ~t~~ai~la~~a~-~~Gadavlv~~P~y-~~--~s~~~l~~~f~~ia~a 125 (292)
T 2ojp_A 81 ATAEAISLTQRFN-DSGIVGCLTVTPYY-NR--PSQEGLYQHFKAIAEH 125 (292)
T ss_dssp SHHHHHHHHHHTT-TSSCSEEEEECCCS-SC--CCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHH-hcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 9999988877543 4553 333 32 4778888888777765
No 112
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=58.58 E-value=57 Score=31.15 Aligned_cols=109 Identities=12% Similarity=-0.034 Sum_probs=70.0
Q ss_pred Cceeec-cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC
Q 014512 299 GNYAEY-SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRG 377 (423)
Q Consensus 299 aN~lD~-gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~ 377 (423)
--|.|= -|..+.+.+.+-++.++ +.++++++++-.+|=...-.... -+.++++..+... .++||++-.|
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~v~~~~----grvpViaGvg 89 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIV-----DNGIDVIVPCGNTSEFYALSLEE-AKEEVRRTVEYVH----GRALVVAGIG 89 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHH-----TTTCCEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eCCccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEEeC
Confidence 456665 68899999999998887 46899988775332211111110 1345555555432 3689999987
Q ss_pred CCCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 378 GPNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 378 G~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
. +-+++.+..+.+. ++|. |.| + ..|.++.++.+-.++.++
T Consensus 90 ~-~t~~ai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a~ 136 (316)
T 3e96_A 90 Y-ATSTAIELGNAAK-AAGADAVMIHMPIH-P--YVTAGGVYAYFRDIIEAL 136 (316)
T ss_dssp S-SHHHHHHHHHHHH-HHTCSEEEECCCCC-S--CCCHHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHH-hcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 5 8888888776443 4563 544 2 358888888888877653
No 113
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=58.47 E-value=13 Score=33.40 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=40.7
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEE--EecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRAL--VIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv--~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
+.++|..+........+.+.. +..+++++.|++ |.|||-.. -+ ..|.++++.. ++|+++.++|.
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~-~~~~~~~k~I~l~InSPGG~v~---a~---~~I~~~i~~~-------~~pV~~~v~g~ 95 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILL-LAAEDASKDISLYINSPGGSIS---AG---MAIYDTMVLA-------PCDIATYAMGM 95 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHH-HHHHCSSSCEEEEEEECCBCHH---HH---HHHHHHHHHC-------SSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHH-HHhCCCCCCEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEECcE
Confidence 455666665544444443322 122555666544 44998542 12 7788887775 47888877775
Q ss_pred CHHHHHHHH
Q 014512 380 NYQRGLAKM 388 (423)
Q Consensus 380 ~~~~a~~~l 388 (423)
-+..|-=++
T Consensus 96 AaS~g~~Ia 104 (208)
T 2cby_A 96 AASMGEFLL 104 (208)
T ss_dssp EETHHHHHH
T ss_pred eHHHHHHHH
Confidence 554443333
No 114
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=57.26 E-value=59 Score=30.64 Aligned_cols=108 Identities=8% Similarity=0.059 Sum_probs=69.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=. ..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+... .++||++-.|++
T Consensus 13 TPf~~d-~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 81 (292)
T 3daq_A 13 TPFTNN-KVNLEALKAHVNFLLE-----NNAQAIIVNGTTAESPTLTTDE-KELILKTVIDLVD----KRVPVIAGTGTN 81 (292)
T ss_dssp CCEETT-EECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred cCcCCC-CcCHHHHHHHHHHHHH-----cCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCcc
Confidence 344434 6778888888888774 6899999886333222111110 1345665555432 369999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+-+++.+..+.+. ++|. |.| | ..|.++.++.+-.++.++
T Consensus 82 ~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~ia~a~ 127 (292)
T 3daq_A 82 DTEKSIQASIQAK-ALGADAIMLITPYY-N--KTNQRGLVKHFEAIADAV 127 (292)
T ss_dssp CHHHHHHHHHHHH-HHTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHhC
Confidence 9999988877543 4563 433 3 257788888888777653
No 115
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=55.58 E-value=23 Score=33.75 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=70.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCC----CcchHHHHhhHHHHHHHHHHhhhhhhccceeEEE
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGG----IANFTDVAATFNGIIQALKEKESKLKAARMHLYV 374 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~gg----i~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivv 374 (423)
--|.|=.|..+.+.+.+-++.+++ .++++++++-.+| ++. ++- +.++++..+... .++||++
T Consensus 13 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~-~Er----~~v~~~~~~~~~----grvpvia 78 (300)
T 3eb2_A 13 VSPVDAEGRVRADVMGRLCDDLIQ-----AGVHGLTPLGSTGEFAYLGT-AQR----EAVVRATIEAAQ----RRVPVVA 78 (300)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSCBBTTSGGGTGGGCCH-HHH----HHHHHHHHHHHT----TSSCBEE
T ss_pred eccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCccccCH-HHH----HHHHHHHHHHhC----CCCcEEE
Confidence 345666688999999998888874 6788888775333 222 221 345555555432 3689999
Q ss_pred EeCCCCHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 375 RRGGPNYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 375 rl~G~~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
-.|+++..++.+..+.+. ++|. |-|+|. .|.++.++.+-.++.++
T Consensus 79 Gvg~~~t~~ai~la~~a~-~~Gadavlv~~P~y~~--~~~~~l~~~f~~va~a~ 129 (300)
T 3eb2_A 79 GVASTSVADAVAQAKLYE-KLGADGILAILEAYFP--LKDAQIESYFRAIADAV 129 (300)
T ss_dssp EEEESSHHHHHHHHHHHH-HHTCSEEEEEECCSSC--CCHHHHHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCC--CCHHHHHHHHHHHHHHC
Confidence 999999999988877543 3553 222232 57788888887777653
No 116
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=54.69 E-value=58 Score=31.08 Aligned_cols=107 Identities=9% Similarity=-0.066 Sum_probs=70.8
Q ss_pred Ccee-eccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc---chHHHHhhHHHHHHHHHHhhhhhhccceeEEE
Q 014512 299 GNYA-EYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA---NFTDVAATFNGIIQALKEKESKLKAARMHLYV 374 (423)
Q Consensus 299 aN~l-D~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~---~~~~vaa~~~gii~a~~~~~~~~~~~~~pivv 374 (423)
--|. +=.|..+.+.+.+-++.+++ .++++++++-.+|=. +.++= +.++++..+... .++||++
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eEr----~~vi~~~~~~~~----grvpVia 86 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQ-----NGIEVIVPNGNTGEFYALTIEEA----KQVATRVTELVN----GRATVVA 86 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHH-----TTCSEECTTSGGGTGGGSCHHHH----HHHHHHHHHHHT----TSSEEEE
T ss_pred eccccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEECcccCChhhCCHHHH----HHHHHHHHHHhC----CCCeEEe
Confidence 4555 55689999999999998885 578998876422211 11221 455565555432 3699999
Q ss_pred EeCCCCHHHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 375 RRGGPNYQRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 375 rl~G~~~~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
-.|+ +-+++.+..+.+. ++|. |=|+|. .|.++.++.+-..+.++
T Consensus 87 Gvg~-st~~ai~la~~A~-~~Gadavlv~~P~y~~--~s~~~l~~~f~~va~a~ 136 (314)
T 3d0c_A 87 GIGY-SVDTAIELGKSAI-DSGADCVMIHQPVHPY--ITDAGAVEYYRNIIEAL 136 (314)
T ss_dssp EECS-SHHHHHHHHHHHH-HTTCSEEEECCCCCSC--CCHHHHHHHHHHHHHHS
T ss_pred cCCc-CHHHHHHHHHHHH-HcCCCEEEECCCCCCC--CCHHHHHHHHHHHHHhC
Confidence 9999 9999988776543 4563 223232 57788888888777653
No 117
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=52.61 E-value=50 Score=31.25 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=66.8
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc---hHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN---FTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~---~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
.|..+.+.+.+-++.+++ .++++++++-.+|=.. .++- +.++++..+... .++||++-.|+++-
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Ls~~Er----~~v~~~~~~~~~----grvpviaGvg~~~t 81 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIK-----HGAHGLVPVGTTGESPTLTEEEH----KRVVALVAEQAQ----GRVPVIAGAGSNNP 81 (297)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHHH----HHHHHHHHHHHT----TSSCBEEECCCSSH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHHH----HHHHHHHHHHhC----CCCeEEEccCCCCH
Confidence 578888989888888875 5889988775322111 1221 455555555432 25899999999999
Q ss_pred HHHHHHHHhhhhhcCC------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 382 QRGLAKMRALAEEIGL------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 382 ~~a~~~l~~~~~~~Gi------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+++.+..+.+. ++|. |-|++. .|.++.++.+-..+.++
T Consensus 82 ~~ai~la~~A~-~~Gadavlv~~P~y~~--~s~~~l~~~f~~va~a~ 125 (297)
T 2rfg_A 82 VEAVRYAQHAQ-QAGADAVLCVAGYYNR--PSQEGLYQHFKMVHDAI 125 (297)
T ss_dssp HHHHHHHHHHH-HHTCSEEEECCCTTTC--CCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCCCCC--CCHHHHHHHHHHHHHhc
Confidence 99988776543 4552 222232 57788888887777653
No 118
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=52.09 E-value=5.7 Score=38.61 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=29.8
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCC----------HHHHHH-hhcccCCCcEEEeecc
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTN----------FDELAQ-KEPWLTSCKLVVKPDM 61 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~----------~~ea~~-~a~~lg~~pvVvKaqv 61 (423)
..+.++|++. |||+| +..++.... .+++.+ ..+.++ +|+|+||..
T Consensus 99 ~~~~~iL~~~-----gIPtP--~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~-kPfVeKPv~ 154 (330)
T 3t7a_A 99 REVYSILQAE-----GILLP--RYAILNRDPNNPKECNLIEGEDHVEVNGEVFQ-KPFVEKPVS 154 (330)
T ss_dssp HHHHHHHHHT-----TCCCC--CEEEECCBTTBGGGSSEEECSSEEEETTEEEE-SSEEEEESB
T ss_pred HHHHHHHHHc-----CCCCC--CEEEEeCCCCCccccceeccchhhhhcccccc-CCeeEcccc
Confidence 4567899999 99999 777775420 011122 234565 799999876
No 119
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=51.26 E-value=20 Score=31.74 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=28.5
Q ss_pred CCCCcEEEE--EecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH
Q 014512 327 DPDGRKRAL--VIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL 385 (423)
Q Consensus 327 ~~~~~~ilv--~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~ 385 (423)
+++.+.|++ |.|||-.. +. ..|.++++.+ ++|+++.++|.-+..|-
T Consensus 53 ~~~~~~I~l~InSPGG~v~----a~--~~I~~~i~~~-------~~pV~~~v~g~AaS~g~ 100 (193)
T 1yg6_A 53 ENPEKDIYLYINSPGGVIT----AG--MSIYDTMQFI-------KPDVSTICMGQAASMGA 100 (193)
T ss_dssp HCSSSCEEEEEEECCBCHH----HH--HHHHHHHHHS-------SSCEEEEEEEEEETHHH
T ss_pred cCCCCCEEEEEECcCCCHH----HH--HHHHHHHHhc-------CCCEEEEEeeeHHHHHH
Confidence 444565444 44998642 22 7788887775 47888887775554443
No 120
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=49.43 E-value=54 Score=30.84 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=65.8
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc---hHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeC
Q 014512 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN---FTDVAATFNGIIQALKEKESKLKAARMHLYVRRG 377 (423)
Q Consensus 301 ~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~---~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~ 377 (423)
|.+=-| .+.+.+.+-++.+++ .++++++++-.+|=.. .++- +.++++..+... .++||++-.|
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~Er----~~v~~~~~~~~~----gr~pvi~Gvg 78 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIK-----SKTDAIIVCGTTGEATTMTETER----KETIKFVIDKVN----KRIPVIAGTG 78 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHHH----HHHHHHHHHHHT----TSSCEEEECC
T ss_pred CcCCCC-cCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHHH----HHHHHHHHHHhC----CCCcEEEeCC
Confidence 444456 899999999998875 5899988876322211 1221 455555555432 3689999999
Q ss_pred CCCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 378 GPNYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 378 G~~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+++-+++.+..+.+. ++|. |.| +. .|.++.++.+-..+.+
T Consensus 79 ~~~t~~ai~la~~a~-~~Gadavlv~~P~y-~~--~s~~~l~~~f~~ia~a 125 (291)
T 3a5f_A 79 SNNTAASIAMSKWAE-SIGVDGLLVITPYY-NK--TTQKGLVKHFKAVSDA 125 (291)
T ss_dssp CSSHHHHHHHHHHHH-HTTCSEEEEECCCS-SC--CCHHHHHHHC-CTGGG
T ss_pred cccHHHHHHHHHHHH-hcCCCEEEEcCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999999988776543 4563 332 32 4777777776665544
No 121
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=48.85 E-value=1.5e+02 Score=27.56 Aligned_cols=119 Identities=11% Similarity=0.028 Sum_probs=64.4
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
++|++++...+... -..+++..+ |. +....-+-++.+.+.-+++++-+|+ ++|++++|+. .
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~aI~~-------~ 212 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEH--PQ-VHLRQLVYGEWNRERAYRQAQQLLK---RYPKTQLVWS-------A 212 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHC--TT-EEEEEEEECTTCHHHHHHHHHHHHH---HCTTEEEEEE-------S
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHC--CC-eEEEEEeeCCCcHHHHHHHHHHHHH---hCCCcCEEEE-------C
Confidence 57888865443221 234666663 32 2111223566677766666666654 3788887662 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
++.+| .|+++++++.+ .++| .|+...+. ..+.+.+. .-.+.+... ++.+....+++++
T Consensus 213 ~d~~a---~g~~~al~~~G-----~~vP~di~vvg~d~~--~~~l~~~~----~~~lttv~~----~~~~~G~~av~~l 273 (350)
T 3h75_A 213 NDEMA---LGAMQAARELG-----RKPGTDLLFSGVNSS--PEALQALI----DGKLSVLEA----GHFTLGGWALVAL 273 (350)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCBTTTBEEEEESCC--HHHHHHHH----HTSSCEEEE----CGGGHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC-----CCCCCCeEEEecCCC--HHHHHHHH----cCCeeEEEc----CchhhHHHHHHHH
Confidence 35666 89999999986 2333 34446653 44444444 234444332 3444444444443
No 122
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=48.33 E-value=65 Score=30.32 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=65.2
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc---hHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 305 SGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN---FTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~---~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
.|..+.+.+.+-++.+++ .++++++++-.+|=.. .++- +.++++..+... .++||++-.|+++-
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~Er----~~v~~~~~~~~~----gr~pviaGvg~~~t 81 (292)
T 2vc6_A 15 DDRIDEVALHDLVEWQIE-----EGSFGLVPCGTTGESPTLSKSEH----EQVVEITIKTAN----GRVPVIAGAGSNST 81 (292)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEETTSGGGTGGGSCHHHH----HHHHHHHHHHHT----TSSCBEEECCCSSH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHHH----HHHHHHHHHHhC----CCCcEEEecCCccH
Confidence 477888888888888875 4788888765222111 1221 455555555432 25899999999998
Q ss_pred HHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHh
Q 014512 382 QRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 382 ~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+++.+..+.+. ++|. |.| + -.|.++.++.+-..+.+
T Consensus 82 ~~ai~la~~A~-~~Gadavlv~~P~y-~--~~s~~~l~~~f~~ia~a 124 (292)
T 2vc6_A 82 AEAIAFVRHAQ-NAGADGVLIVSPYY-N--KPTQEGIYQHFKAIDAA 124 (292)
T ss_dssp HHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 98888776443 4553 332 2 24778888888777765
No 123
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=47.70 E-value=53 Score=35.58 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=58.8
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCC-
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGG- 378 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G- 378 (423)
.-+|+|.+.+++.+.+++. +.+++.|.+-.. .+...+.. ..+++++++.+. .. +.+-.||
T Consensus 634 eVi~lG~~v~~eeiv~aA~--------e~~adiVglSsl--~~~~~~~~---~~vi~~Lr~~G~----~d--v~VivGG~ 694 (762)
T 2xij_A 634 DVDIGPLFQTPREVAQQAV--------DADVHAVGVSTL--AAGHKTLV---PELIKELNSLGR----PD--ILVMCGGV 694 (762)
T ss_dssp EEEECCTTCCHHHHHHHHH--------HTTCSEEEEEEC--SSCHHHHH---HHHHHHHHHTTC----TT--SEEEEEES
T ss_pred EEeeCCCCCCHHHHHHHHH--------HcCCCEEEEeee--cHHHHHHH---HHHHHHHHhcCC----CC--CEEEEeCC
Confidence 3478899999998876655 345565555432 22222333 778888888752 23 3444566
Q ss_pred -CCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 379 -PNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 379 -~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+..+ ...+. +.|+.-+ |++-++..+++..+.+.++
T Consensus 695 ~P~~d--~~~l~----~~GaD~~-f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 695 IPPQD--YEFLF----EVGVSNV-FGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp CCGGG--HHHHH----HHTCCEE-ECTTCCHHHHHHHHHHHHH
T ss_pred CCccc--HHHHH----hCCCCEE-eCCCCCHHHHHHHHHHHHH
Confidence 3322 22345 6788754 5556799999999888774
No 124
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=46.80 E-value=26 Score=31.80 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=37.5
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEE--ecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 304 YSGAPNEGEVLQYARVVIDCATADPDGRKRALV--IGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 304 ~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~--~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
++|..+.+........++. +..+++.+.|++. .|||-.. +. ..|.++++.. ++|+++.+.|.-+
T Consensus 50 l~g~I~~~~a~~i~~~L~~-l~~~~~~k~I~l~InSPGG~v~----ag--~~I~~~i~~~-------~~pV~t~v~G~Aa 115 (218)
T 1y7o_A 50 LTGPVEDNMANSVIAQLLF-LDAQDSTKDIYLYVNTPGGSVS----AG--LAIVDTMNFI-------KADVQTIVMGMAA 115 (218)
T ss_dssp EESCBCHHHHHHHHHHHHH-HHHHCTTSCEEEEEEECCBCHH----HH--HHHHHHHHHS-------SSCEEEEEEEEEE
T ss_pred EeCEECHHHHHHHHHHHHH-HHhcCCCCCEEEEEECcCCCHH----HH--HHHHHHHHhc-------CCCEEEEEccEeH
Confidence 3444444433333333321 1225555664444 4888542 12 6677777765 4788888777655
Q ss_pred HHHHHHH
Q 014512 382 QRGLAKM 388 (423)
Q Consensus 382 ~~a~~~l 388 (423)
..|--++
T Consensus 116 S~G~~Ia 122 (218)
T 1y7o_A 116 SMGTVIA 122 (218)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 125
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=45.27 E-value=84 Score=29.22 Aligned_cols=119 Identities=12% Similarity=0.068 Sum_probs=67.6
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+... -..+++..+ |-.+....-+.++.+.+.-+++++-+|+ .+|++++|+. .
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 249 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA-------S 249 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHHH---TTCCCSEEEE-------S
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHC--CCCCCcceEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------C
Confidence 67998865433221 134667664 3333222234567777777777777764 3677888773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++.+| -|+++++++.+ .++| -|+...+.... +.+ .-++.+. .-++++..+.+++++-
T Consensus 250 nd~~A---~g~~~al~~~G-----~~vP~di~vvg~D~~~~~---~~~-----~p~lttv----~~~~~~~g~~a~~~l~ 309 (338)
T 3dbi_A 250 NDDMA---IGAMKALHERG-----VAVPEQVSVIGFDDIAIA---PYT-----VPALSSV----KIPVTEMIQEIIGRLI 309 (338)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCTTG---GGS-----SSCCEEE----ECCHHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC-----CCCCCCeEEEEECChHHH---hhc-----CCcceEE----ecCHHHHHHHHHHHHH
Confidence 35666 89999999986 3444 34556654311 001 1133332 2466676666666553
No 126
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=44.85 E-value=1.4e+02 Score=27.74 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=68.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++..+.. .+ |++-.|++
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~-----~g--vi~Gvg~~ 74 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITS-----KGVDVVFVAGTTGLGPALSLQE-KMELTDAATSAA-----RR--VIVQVASL 74 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHHHHC-----SS--EEEECCCS
T ss_pred cCcC-CCccCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh-----CC--EEEeeCCC
Confidence 4667 789999999999998875 5789988876333211111110 145666655543 12 88889999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
+-+++.+..+.+. ++|. |.| |. -.|.++.++.+-..+.++
T Consensus 75 ~t~~ai~la~~A~-~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a~ 121 (286)
T 2r91_A 75 NADEAIALAKYAE-SRGAEAVASLPPYY-FP-RLSERQIAKYFRDLCSAV 121 (286)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEECCSCS-ST-TCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEcCCcC-CC-CCCHHHHHHHHHHHHHhc
Confidence 9999988777543 4563 333 21 037788888887777653
No 127
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=44.46 E-value=1.5e+02 Score=25.43 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=79.4
Q ss_pred CCcEEEEEcC------CcHHHHHHHHhhccCCC-CCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--
Q 014512 269 KGRIWTMVAG------GGASVIYADTVGDLGYA-SELGNY--AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI-- 337 (423)
Q Consensus 269 ~g~I~~i~nG------~G~~~~~~D~l~~~g~g-g~paN~--lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~-- 337 (423)
+-||+++..= -.+---+.|.|..+ | .+..|. +++.|.-. +--+++.+++ ..+.|+++..-
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G~v~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~V 82 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRI--GQVKDDNITVVWVPGAYE---LPLATEALAK----SGKYDAVVALGTV 82 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCCTTSEEEEEESSTTT---HHHHHHHHHH----HCSCSEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCcccceEEEEcCcHHH---HHHHHHHHHh----cCCCCEEEEeeee
Confidence 3456666431 13445578999885 5 444443 45566554 4456666665 45688887763
Q ss_pred -cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 014512 338 -GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415 (423)
Q Consensus 338 -~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~ 415 (423)
=|+...++-|+ +.+.+.+-+..-. .++||.-. +.-.|.++|.+ .+|.... .-=.||+..+
T Consensus 83 IrG~T~Hfd~Va---~~v~~Gl~~v~L~---~~vPV~~GVLT~~~~eQA~~-------Rag~~~~-----nKG~eaA~aa 144 (156)
T 3nq4_A 83 IRGGTAHFEYVA---GGASNGLASVAQD---SGVPVAFGVLTTESIEQAIE-------RAGTKAG-----NKGAEAALTA 144 (156)
T ss_dssp ECCSSTHHHHHH---HHHHHHHHHHHHH---HCCCEEEEEEEESCHHHHHH-------HBTSTTC-----BHHHHHHHHH
T ss_pred ecCCchHHHHHH---HHHHHHHHHHHhc---cCCCEEEEEeCCCCHHHHHH-------HhCCccc-----ccHHHHHHHH
Confidence 48888877777 6777766665432 47997776 77778887743 3454222 3457999999
Q ss_pred HHHHH
Q 014512 416 IECIS 420 (423)
Q Consensus 416 v~~~~ 420 (423)
+++++
T Consensus 145 lem~~ 149 (156)
T 3nq4_A 145 LEMIN 149 (156)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99885
No 128
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=43.49 E-value=23 Score=37.20 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQR 383 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~ 383 (423)
+....+.+.++++.+.+ |+++++|++-+ |||-.... +.|-+.++.... .++||++.++|.-+.-
T Consensus 320 ~~~~~~~l~~~L~~a~~----d~~vkaVVL~i~spGG~~~~~------~~i~~~i~~l~~----~~kPVia~v~g~Aasg 385 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS------EVIRAELAAARA----AGKPVVVSMGGMAASG 385 (593)
T ss_dssp TSEEHHHHHHHHHHHHH----CTTEEEEEEEEEEEEECHHHH------HHHHHHHHHHHH----TTCCEEEEEEEEEETH
T ss_pred chhHHHHHHHHHHHHHh----CCCCCEEEEEecCCCCCHHHH------HHHHHHHHHHHh----CCCCEEEEECCChHHH
Confidence 34556778888887776 99999988877 66643221 223333443321 3599999887754433
Q ss_pred H
Q 014512 384 G 384 (423)
Q Consensus 384 a 384 (423)
|
T Consensus 386 G 386 (593)
T 3bf0_A 386 G 386 (593)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=42.88 E-value=1.1e+02 Score=27.85 Aligned_cols=91 Identities=12% Similarity=0.007 Sum_probs=54.6
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+... -..+++..+ |-.+..-.-+.++.+.+.-+++++-+|+ .++.+++|+. .
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 194 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEA--GLMPLAGYLQKADPTRPGGYLAASRLLA---LEVPPTAIIT-------D 194 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTT--TCCCCTTCEEEECSSHHHHHHHHHHHHH---SSSCCSEEEE-------S
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHC--CCCCChhHeecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 57888865543322 133666664 3332221223456677777777776665 3577888773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCC
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPN 380 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~ 380 (423)
++.+| -|+++++++.+ .++| -|+...+..
T Consensus 195 nd~~A---~g~~~al~~~G-----~~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 195 CNMLG---DGVASALDKAG-----LLGGEGISLIAYDGLP 226 (294)
T ss_dssp SHHHH---HHHHHHHHHTT-----CSSTTSCEEEEETCSC
T ss_pred CHHHH---HHHHHHHHHcC-----CCCCCceEEEeecCcc
Confidence 36666 89999999986 3445 355566643
No 130
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=42.84 E-value=1.3e+02 Score=24.16 Aligned_cols=104 Identities=9% Similarity=0.094 Sum_probs=55.6
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCH
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~ 381 (423)
+.+-|.-+.++..+..+.+++.+. ..+.+.+++++ +|+.-++...+ ..+++..+..+.. +. -+.+.|-+.
T Consensus 16 v~l~G~lD~~~a~~l~~~ll~~i~-~~~~~~vIlDl-sgV~~iDs~g~--~~L~~~~~~~~l~----G~--~~~l~Gi~p 85 (123)
T 3zxn_A 16 VAIEETLHDQSVIQFKEELLHNIT-GVAGKGLVIDI-SALEVVDEFVT--RVLIEISRLAELL----GL--PFVLTGIKP 85 (123)
T ss_dssp EECCCCC-CHHHHHHHHHHHHHHT-SSCCSEEEEEC-TTCSSCCHHHH--HHHHHHHHHHHHH----TC--CEEEECCCH
T ss_pred EEEeEeeCHHHHHHHHHHHHHHHH-hcCCCEEEEEc-CCCCcccHHHH--HHHHHHHHHHHHC----CC--EEEEEcCCH
Confidence 345666676766666666665443 34556655555 45444443222 5666655554321 22 234556554
Q ss_pred HHHHHHHHhhhhh-cCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 382 QRGLAKMRALAEE-IGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 382 ~~a~~~l~~~~~~-~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+-+ +.|..++-. .++++| .|.++|+..+-..++-
T Consensus 86 ~va-~~l~~~G~~l~~i~~~-----~~l~~Al~~l~~~~~~ 120 (123)
T 3zxn_A 86 AVA-ITLTEMGLDLRGMATA-----LNLQKGLDKLKNLARM 120 (123)
T ss_dssp HHH-HHHHHTTCCSTTSEEE-----SSHHHHHHHHHHHHTC
T ss_pred HHH-HHHHHhCCCccceEEE-----CCHHHHHHHHHHhhhh
Confidence 444 555532222 233444 8999999988776653
No 131
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=42.71 E-value=1.4e+02 Score=26.72 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=57.2
Q ss_pred cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHH
Q 014512 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~ 359 (423)
|.-|+ ..++...|+ +-+|+|-+.+++.+.++++- .+.+.|.+...+-++...+- ++.+++.++
T Consensus 108 G~~iv-~~~l~~~G~-----~Vi~LG~~vp~e~iv~~~~~--------~~~d~v~l~~S~l~~~~~~~---~~~~i~~l~ 170 (215)
T 3ezx_A 108 GHRLV-TTMLGANGF-----QIVDLGVDVLNENVVEEAAK--------HKGEKVLLVGSALMTTSMLG---QKDLMDRLN 170 (215)
T ss_dssp HHHHH-HHHHHHTSC-----EEEECCSSCCHHHHHHHHHH--------TTTSCEEEEEECSSHHHHTH---HHHHHHHHH
T ss_pred HHHHH-HHHHHHCCC-----eEEEcCCCCCHHHHHHHHHH--------cCCCEEEEEchhcccCcHHH---HHHHHHHHH
Confidence 55553 456666433 45899999999988766652 23454555112222222222 367777787
Q ss_pred HhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 360 EKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 360 ~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
+.+.. .++||+ +||.-..+ ..-+ +.|-..| ..+..+||+.+-+
T Consensus 171 ~~~~~---~~v~v~--vGG~~~~~--~~a~----~iGad~~----~~dA~~av~~a~~ 213 (215)
T 3ezx_A 171 EEKLR---DSVKCM--FGGAPVSD--KWIE----EIGADAT----AENAAEAAKVALE 213 (215)
T ss_dssp HTTCG---GGSEEE--EESSSCCH--HHHH----HHTCCBC----CSSHHHHHHHHHH
T ss_pred HcCCC---CCCEEE--EECCCCCH--HHHH----HhCCeEE----ECCHHHHHHHHHH
Confidence 76420 145554 45543332 1222 4565544 3777777776644
No 132
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=40.82 E-value=1.3e+02 Score=24.03 Aligned_cols=85 Identities=18% Similarity=0.088 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhhhccCC-CCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHH
Q 014512 309 NEGEVLQYARVVIDCATADP-DGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAK 387 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~-~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~ 387 (423)
+.+.+.+.+.-++. .+| +.+.++++ +++++..+..+. ..+++..++... .+..+++ .|.+ ..-+++
T Consensus 29 ~a~~~~~~l~~~~~---~~~~~~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l~l--~~~~-~~v~~~ 95 (130)
T 2kln_A 29 NAEDFRRRALTVVD---QDPGQVEWFVLN-AESNVEVDLTAL--DALDQLRTELLR----RGIVFAM--ARVK-QDLRES 95 (130)
T ss_dssp THHHHHHHHHHHTT---SSSSCCEEEEEE-CSCCSSSBCSTT--THHHHHHHHHHT----TTEEEEE--ECCS-SHHHHH
T ss_pred hHHHHHHHHHHHHh---cCCCCceEEEEE-CCCCChhhHHHH--HHHHHHHHHHHH----CCCEEEE--EcCC-HHHHHH
Confidence 44555555554432 122 44544444 566665554443 666666666542 2444443 3333 235667
Q ss_pred HHhhhhhcCC-------ceeecCCCCCHHHHHHHH
Q 014512 388 MRALAEEIGL-------PIEVYGPEATMTGICKQA 415 (423)
Q Consensus 388 l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~ 415 (423)
|. .+|+ ++| .|.++|+..+
T Consensus 96 l~----~~gl~~~~~~~~i~-----~t~~~Al~~~ 121 (130)
T 2kln_A 96 LR----AASLLDKIGEDHIF-----MTLPTAVQAF 121 (130)
T ss_dssp HH----HCTTHHHHCTTEEE-----SCHHHHHHHH
T ss_pred HH----HcCChhhcCcceeE-----CCHHHHHHHH
Confidence 76 5665 344 7999998765
No 133
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=40.68 E-value=1.7e+02 Score=27.18 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=55.9
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc-hHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN-FTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 301 ~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~-~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-+|+|-+.+++.+.++++ ..+.++|.+....+-.. ..+-. ..+++.+++.+.. .++| +.+||.
T Consensus 160 Vi~LG~~vp~e~iv~aa~--------e~~~d~VglS~l~t~~~~~~~~~---~~~i~~L~~~g~~---~~i~--vivGG~ 223 (262)
T 1xrs_B 160 AYNLGSQVANEDFIKKAV--------ELEADVLLVSQTVTQKNVHIQNM---THLIELLEAEGLR---DRFV--LLCGGP 223 (262)
T ss_dssp EEECCSSBCHHHHHHHHH--------HTTCSEEEEECCCCTTSHHHHHH---HHHHHHHHHTTCG---GGSE--EEEECT
T ss_pred EEECCCCCCHHHHHHHHH--------HcCCCEEEEEeecCCccchHHHH---HHHHHHHHhcCCC---CCCE--EEEECC
Confidence 378999999998877665 23456666554222100 12222 5677777765310 1244 455776
Q ss_pred CHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 380 NYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
... .+..+ +.|... +|++-++..+.+...++..+
T Consensus 224 ~~~--~~~a~----~iGad~-~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 224 RIN--NEIAK----ELGYDA-GFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp TCC--HHHHH----TTTCSE-EECTTCCHHHHHHHHHHHHH
T ss_pred cCC--HHHHH----HcCCeE-EECCchHHHHHHHHHHHHHH
Confidence 443 23344 678654 46666777777777776544
No 134
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=40.51 E-value=47 Score=30.02 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=34.9
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEE--EEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKR--ALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~i--lv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
+-++|..+.+........++.+-..++ +.| .||.|||-.. +. ..|.++++.. +.|+++.+.|.
T Consensus 42 I~l~G~I~~~~a~~i~~~L~~l~~~~~--k~I~l~INSPGGsv~----a~--~~I~~~i~~~-------~~pV~t~v~g~ 106 (215)
T 2f6i_A 42 IYLTDEINKKTADELISQLLYLDNINH--NDIKIYINSPGGSIN----EG--LAILDIFNYI-------KSDIQTISFGL 106 (215)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHHCC--SCEEEEEEECCBCHH----HH--HHHHHHHHHS-------SSCEEEEEEEE
T ss_pred EEEccEECHHHHHHHHHHHHHHHhCCC--CcEEEEEECCCCCHH----HH--HHHHHHHHhc-------CCCEEEEEeeE
Confidence 344555554433333333322111244 444 3445998642 22 7788888776 35777766664
Q ss_pred CHHHH
Q 014512 380 NYQRG 384 (423)
Q Consensus 380 ~~~~a 384 (423)
-+..|
T Consensus 107 AAS~g 111 (215)
T 2f6i_A 107 VASMA 111 (215)
T ss_dssp ECHHH
T ss_pred hHhHH
Confidence 44444
No 135
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=39.01 E-value=2.1e+02 Score=25.55 Aligned_cols=119 Identities=5% Similarity=0.023 Sum_probs=67.5
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+... ...+++..+ |.......-+.++.+.+..+++++-+++ ..|.+++|+. .
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 195 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDF--GLTEFPIDAVTIETPLEKIRDFGQRLMQ---SSDRPDGIVS-------I 195 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHT--TCEECCCCSCCTTSCHHHHHHHHHHHTT---SSSCCSEEEE-------S
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHc--CCCcchhheeccccchHHHHHHHHHHHh---CCCCCcEEEE-------c
Confidence 57888865433221 123566653 3322221224566777777777776664 4677888773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++.+| .|+++++++.+ .++| -|+...+.... +.+ .-.+.+. .-++.+..+.+++++-
T Consensus 196 ~d~~A---~g~~~al~~~g-----~~vP~di~vig~d~~~~~---~~~-----~p~lttv----~~~~~~~g~~a~~~l~ 255 (288)
T 3gv0_A 196 SGSST---IALVAGFEAAG-----VKIGEDVDIVSKQSAEFL---NWI-----KPQIHTV----NEDIKLAGRELAKALL 255 (288)
T ss_dssp CHHHH---HHHHHHHHTTT-----CCTTTSCEEEEEESSTTH---HHH-----CTTSEEE----ECCHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEEecChHHH---hcc-----CCCceEE----ecCHHHHHHHHHHHHH
Confidence 35666 89999999876 3444 44556665421 111 1244333 2577777777777653
No 136
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=38.39 E-value=1.8e+02 Score=28.12 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=66.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
-|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -+.++++ ... .++||++-.|++
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~--~~~-----grvpViaGvg~~ 102 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIA-----DGMSAVVYCGSMGDWPLLTDEQ-RMEGVER--LVK-----AGIPVIVGTGAV 102 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCCEEESSGGGTGGGSCHHH-HHHHHHH--HHH-----TTCCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccCcChhhCCHHH-HHHHHHH--HhC-----CCCcEEEecCCC
Confidence 44444688999999999998885 5789988876322211111110 1345554 222 369999999999
Q ss_pred CHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHH
Q 014512 380 NYQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+-+++.+..+.+. ++|. |.| +. -.|.++.++.+-.++.
T Consensus 103 st~eai~la~~A~-~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 103 NTASAVAHAVHAQ-KVGAKGLMVIPRVL-SR-GSVIAAQKAHFKAILS 147 (344)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEECCCCS-SS-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCcc-CC-CCCHHHHHHHHHHHHh
Confidence 9999988776543 4553 333 21 0367888888877776
No 137
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=37.88 E-value=2e+02 Score=24.81 Aligned_cols=125 Identities=15% Similarity=0.043 Sum_probs=79.6
Q ss_pred CcEEEEEcC------CcHHHHHHHHhhc-cCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---
Q 014512 270 GRIWTMVAG------GGASVIYADTVGD-LGYASELGN--YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI--- 337 (423)
Q Consensus 270 g~I~~i~nG------~G~~~~~~D~l~~-~g~gg~paN--~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--- 337 (423)
-||+++..= -.+---+.|.|.. + |.+..| -+++.|.-. +--+++.+.+ ..+.|+++..-
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~--Gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VI 88 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKH--DVKLENIDIESVPGSWE---LPQGIRASIA----RNTYDAVIGIGVLI 88 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHH--CCCGGGEEEEECSSGGG---HHHHHHHHHH----HSCCSEEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEecccc
Confidence 467777532 1344456788888 7 555555 455555443 5556666665 45688887763
Q ss_pred cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCc-eeecCCCCCHHHHHHHH
Q 014512 338 GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLP-IEVYGPEATMTGICKQA 415 (423)
Q Consensus 338 ~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip-~~~~g~~~t~~~av~~~ 415 (423)
=|++..++-|+ +.+.+.+-+..-. .++||.-. +.-.|.++|.+ .+|.. .. .-=.||+..+
T Consensus 89 rG~T~Hfd~Va---~~v~~Gl~~v~L~---~~vPV~~GVLT~~~~eQA~~-------Rag~~~~~-----nKG~eaA~aa 150 (159)
T 1kz1_A 89 KGSTMHFEYIS---EAVVHGLMRVGLD---SGVPVILGLLTVLNEEQALY-------RAGLNGGH-----NHGNDWGSAA 150 (159)
T ss_dssp CCSSSHHHHHH---HHHHHHHHHHHHH---HCCCEEEEEEEESSHHHHHH-------HBTCTTCC-----BHHHHHHHHH
T ss_pred cCCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHH-------HhCCcccc-----chHHHHHHHH
Confidence 48888887777 7777776665432 47997776 77778887743 24421 11 3447999999
Q ss_pred HHHHHh
Q 014512 416 IECISA 421 (423)
Q Consensus 416 v~~~~~ 421 (423)
+++++-
T Consensus 151 lem~~l 156 (159)
T 1kz1_A 151 VEMGLK 156 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998863
No 138
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.15 E-value=1.4e+02 Score=22.89 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHHh
Q 014512 352 NGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECISA 421 (423)
Q Consensus 352 ~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~~ 421 (423)
+-||+.+++. .+|+|+-..|.+...-.+.-.++. +-|+..-+. ..++|+|--++.-+..|-
T Consensus 41 rdiiksmkdn-------gkplvvfvngasqndvnefqneak-kegvsydvl-kstdpeeltqrvreflkt 101 (112)
T 2lnd_A 41 RDIIKSMKDN-------GKPLVVFVNGASQNDVNEFQNEAK-KEGVSYDVL-KSTDPEELTQRVREFLKT 101 (112)
T ss_dssp HHHHHHHTTC-------CSCEEEEECSCCHHHHHHHHHHHH-HHTCEEEEE-ECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------CCeEEEEecCcccccHHHHHHHHH-hcCcchhhh-ccCCHHHHHHHHHHHHHh
Confidence 4555555543 589999999988776655544443 458865444 246788877666665553
No 139
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=37.13 E-value=1.3e+02 Score=29.46 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=48.4
Q ss_pred eeeccCCC----CHHHHHHHHHHHHhhhccCCCCcEEEEEe--cC--C---CcchHHHHhhHHHHHHHHHHhhhhh-hcc
Q 014512 301 YAEYSGAP----NEGEVLQYARVVIDCATADPDGRKRALVI--GG--G---IANFTDVAATFNGIIQALKEKESKL-KAA 368 (423)
Q Consensus 301 ~lD~gG~a----~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~g--g---i~~~~~vaa~~~gii~a~~~~~~~~-~~~ 368 (423)
.+.+||+. +.+.|.++++.+- +..+++-||+ |. | +.+. +.. ..+++++++..... ...
T Consensus 150 ~vniggn~~t~~~~~dy~~~~~~~~------~~ad~ielNisCPn~~G~~~l~~~-~~l---~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 150 GVNLGKNKTSVDAAEDYAEGVRVLG------PLADYLVVNVSSPNTAGLRSLQGK-AEL---RRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp EEEECCCTTCSCHHHHHHHHHHHHG------GGCSEEEEECCCTTSTTGGGGGSH-HHH---HHHHHHHHHHHHTSCGGG
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHh------hhCCEEEEECCCCCCCCccccCCH-HHH---HHHHHHHHHHHhhccccC
Confidence 36677763 5678888888763 3468899997 32 1 1222 222 45666666532110 014
Q ss_pred ceeEEEEeCCC-CHHHHHHHHHhhhhhcCCce
Q 014512 369 RMHLYVRRGGP-NYQRGLAKMRALAEEIGLPI 399 (423)
Q Consensus 369 ~~pivvrl~G~-~~~~a~~~l~~~~~~~Gip~ 399 (423)
++||++++.-. ..++.. -+.+...++|+.-
T Consensus 220 ~~Pv~vKi~p~~~~~~~~-~ia~~~~~aGadg 250 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKE-DIASVVKELGIDG 250 (367)
T ss_dssp CCEEEEEECSCCCHHHHH-HHHHHHHHHTCCE
T ss_pred CceEEEEeCCCCCHHHHH-HHHHHHHHcCCCE
Confidence 69999996643 333332 2333334677653
No 140
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.67 E-value=1.5e+02 Score=26.45 Aligned_cols=119 Identities=11% Similarity=-0.039 Sum_probs=67.4
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++...+... ...+++..+ |-......-+.++.+.+..+++++-+|+ .+|++++++. .
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 199 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLA--DIVLPKEYILHFDFSRESGQQAVEELMG---LQQPPTAIMA-------T 199 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHc--CCCCChheEEecCCCHHHHHHHHHHHHc---CCCCCcEEEE-------c
Confidence 57998875544322 134666664 3332221223466677777777776664 4678888773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++.+| .|+++++++.+ .++| -|+...+.. .+ +.+ .-.+.+. .-++.+..+.+++++-
T Consensus 200 ~d~~a---~g~~~al~~~g-----~~vP~di~vig~d~~~--~~-~~~-----~p~lttv----~~~~~~~g~~av~~l~ 259 (292)
T 3k4h_A 200 DDLIG---LGVLSALSKKG-----FVVPKDVSIVSFNNAL--LS-EIA-----SPPLSTV----DVNIYQLGYEAAKALV 259 (292)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCH--HH-HHS-----SSCCEEE----ECCHHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHhC-----CCCCCeEEEEEecCcc--hh-hcc-----CCCceEE----ecCHHHHHHHHHHHHH
Confidence 35666 89999999986 3344 345566642 11 111 1234333 2567777777776653
No 141
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=36.30 E-value=2.1e+02 Score=24.58 Aligned_cols=125 Identities=14% Similarity=0.013 Sum_probs=77.6
Q ss_pred CcEEEEEcC------CcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---cCC
Q 014512 270 GRIWTMVAG------GGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI---GGG 340 (423)
Q Consensus 270 g~I~~i~nG------~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~gg 340 (423)
-||+++..- -.+---+.|.|..+ |.+ .| +|+=-=|-.-.+--+++.+.+ ..+.|+++..- =|+
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--Gv~-~~-i~v~~VPGafEiP~aa~~la~----~~~yDavIaLG~VIrG~ 85 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKY--SVN-ED-IDVVWVPGAYELGVTAQALGK----SGKYHAIVCLGAVVKGD 85 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCC-SC-CEEEEESSHHHHHHHHHHHHH----TTCCSEEEEEEECCCCS
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCC-Cc-eEEEECCcHHHHHHHHHHHHh----cCCCCEEEEecccccCC
Confidence 467776532 13444577899885 443 33 222222334446566676665 56789888774 488
Q ss_pred CcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 341 IANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 341 i~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
+..++-|+ +.+.+.+-+..-. .++||.-. +.-.|.++|.. .+|.... .-=.||+..+++++
T Consensus 86 T~Hfd~Va---~~v~~gl~~v~L~---~~vPV~~GVLT~~~~eQA~~-------Rag~~~~-----nKG~eaA~aAlem~ 147 (156)
T 1c2y_A 86 TSHYDAVV---NSASSGVLSAGLN---SGVPCVFGVLTCDNMDQAIN-------RAGGKAG-----NKGAESALTAIEMA 147 (156)
T ss_dssp STHHHHHH---HHHHHHHHHHHHH---HTSCEEEEEECCSSHHHHHH-------HEEETTE-----EHHHHHHHHHHHHH
T ss_pred chHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHH-------HcCCccc-----chHHHHHHHHHHHH
Confidence 88887777 6777766665432 46997776 77778776632 2443222 23478999999987
Q ss_pred H
Q 014512 420 S 420 (423)
Q Consensus 420 ~ 420 (423)
+
T Consensus 148 ~ 148 (156)
T 1c2y_A 148 S 148 (156)
T ss_dssp H
T ss_pred H
Confidence 6
No 142
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=36.28 E-value=2.1e+02 Score=24.59 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=75.5
Q ss_pred cEEEEEcC------CcHHHHHHHHhhccCCCCCCCce--eeccCCCCHHHHHHHHHHHHhh-hccCCCCcEEEEEe---c
Q 014512 271 RIWTMVAG------GGASVIYADTVGDLGYASELGNY--AEYSGAPNEGEVLQYARVVIDC-ATADPDGRKRALVI---G 338 (423)
Q Consensus 271 ~I~~i~nG------~G~~~~~~D~l~~~g~gg~paN~--lD~gG~a~~~~~~~a~~~ll~~-~~~~~~~~~ilv~~---~ 338 (423)
||+++..= -.+---+.|.|..+ | .|. .++.|. -.+--+++.+.+. .....+.|+++..- =
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G---~~i~v~~VPGa---fEiP~aa~~la~~~~~~~~~yDavIaLG~VIr 85 (157)
T 2i0f_A 14 HLLIVEARFYDDLADALLDGAKAALDEA--G---ATYDVVTVPGA---LEIPATISFALDGADNGGTEYDGFVALGTVIR 85 (157)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHT--T---CEEEEEEESSG---GGHHHHHHHHHHHHHTTCCCCSEEEEEEEEEC
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHc--C---CCeEEEECCcH---HHHHHHHHHHHhhccccCCCCCEEEEeeeeec
Confidence 57766432 13444567888885 4 333 234333 3455566666540 00015688887763 5
Q ss_pred CCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 339 GGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 339 ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
|+...++-|+ +.+.+.+-+..-. .++||.-. +.-.|.++|.+-- |.... .-=.||+..+++
T Consensus 86 G~T~Hfd~Va---~~v~~gl~~vsl~---~~vPV~~GVLT~~~~eQA~~Ra-------g~~~~-----nkG~eaA~aAle 147 (157)
T 2i0f_A 86 GETYHFDIVS---NESCRALTDLSVE---ESIAIGNGILTVENEEQAWVHA-------RREDK-----DKGGFAARAALT 147 (157)
T ss_dssp CSSSTTHHHH---HHHHHHHHHHHHH---TTCCEEEEEEEESSHHHHHHHH-------CTTTT-----CHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHHHh-------Ccccc-----ccHHHHHHHHHH
Confidence 8888888777 7777776665432 47997776 7777888775433 32111 345799999999
Q ss_pred HHH
Q 014512 418 CIS 420 (423)
Q Consensus 418 ~~~ 420 (423)
+++
T Consensus 148 m~~ 150 (157)
T 2i0f_A 148 MIG 150 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 143
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=35.83 E-value=1.5e+02 Score=25.40 Aligned_cols=124 Identities=11% Similarity=0.026 Sum_probs=77.6
Q ss_pred CcEEEEEcC------CcHHHHHHHHhhccCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---c
Q 014512 270 GRIWTMVAG------GGASVIYADTVGDLGYASELGN--YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI---G 338 (423)
Q Consensus 270 g~I~~i~nG------~G~~~~~~D~l~~~g~gg~paN--~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~ 338 (423)
-||+++..= -.+---+.|.|..+ |.+..| -.++.|.-. +--+++.+.+ ..+.|+++..- =
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIalG~VIr 83 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRH--GGREEDITLVRVPGSWE---IPVAAGELAR----KEDIDAVIAIGVLIR 83 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHT----CTTCCEEEEEEEEEC
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 457776432 13445577999885 555443 334444433 5556676665 56789887763 4
Q ss_pred CCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 339 GGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 339 ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
|+...++-|+ +.+.+.+-+..-. .++||.-. +.-.|.++|.. .+|.... .-=.||+..+++
T Consensus 84 G~T~Hfd~Va---~~vs~gl~~v~l~---~~vPV~~GVLT~~~~eQA~~-------Rag~~~~-----nkG~eaA~aale 145 (154)
T 1hqk_A 84 GATPHFDYIA---SEVSKGLANLSLE---LRKPITFGVITADTLEQAIE-------RAGTKHG-----NKGWEAALSAIE 145 (154)
T ss_dssp CSSTHHHHHH---HHHHHHHHHHHHH---HTSCEEEEEEEESSHHHHHH-------HEEETTE-----EHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---cCCCEEEEEeCCCCHHHHHH-------Hhccccc-----chHHHHHHHHHH
Confidence 8888877777 6666666655422 46997766 66667887743 3443222 344789999999
Q ss_pred HHH
Q 014512 418 CIS 420 (423)
Q Consensus 418 ~~~ 420 (423)
+++
T Consensus 146 m~~ 148 (154)
T 1hqk_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 144
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=35.82 E-value=1.5e+02 Score=25.36 Aligned_cols=124 Identities=12% Similarity=0.058 Sum_probs=77.9
Q ss_pred CcEEEEEcC------CcHHHHHHHHhhccCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---c
Q 014512 270 GRIWTMVAG------GGASVIYADTVGDLGYASELGN--YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI---G 338 (423)
Q Consensus 270 g~I~~i~nG------~G~~~~~~D~l~~~g~gg~paN--~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~ 338 (423)
-||+++..= -.+---+.|.|..+ |.+..| -+++.|.-. +--+++.+.+ ..+.|+++..- =
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VIr 83 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRH--GVDTNDIDVAWVPGAFE---IPFAAKKMAE----TKKYDAIITLGTVIR 83 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHH----TSCCSEEEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 467776432 13445577999885 555443 334444433 5556676665 56789887763 4
Q ss_pred CCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 339 GGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 339 ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
|+...++-|+ +.+.+.+-+..-. .++||.-. +.-.|.++|.. .+|.... .-=.||+..+++
T Consensus 84 G~T~Hfd~V~---~~vs~Gl~~v~l~---~~vPV~~GVLT~~~~eQA~~-------Rag~~~~-----nkG~eaA~aale 145 (154)
T 1rvv_A 84 GATTHYDYVC---NEAAKGIAQAANT---TGVPVIFGIVTTENIEQAIE-------RAGTKAG-----NKGVDCAVSAIE 145 (154)
T ss_dssp CSSSHHHHHH---HHHHHHHHHHHHH---HCSCEEEEEEEESSHHHHHH-------TEEETTE-----EHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHhh---hCCCEEEEecCCCCHHHHHH-------Hhccccc-----chHHHHHHHHHH
Confidence 8888887777 6666666655422 46997766 66667887732 3454222 344789999999
Q ss_pred HHH
Q 014512 418 CIS 420 (423)
Q Consensus 418 ~~~ 420 (423)
+++
T Consensus 146 m~~ 148 (154)
T 1rvv_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 145
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=35.62 E-value=1.2e+02 Score=25.54 Aligned_cols=94 Identities=7% Similarity=0.001 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc-chHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA-NFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~-~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
++.+|+.+..+++.+-+.. |+-+.++|.-+|+.+ +..+.. ..+.++++. .. .++..+ +.+. .
T Consensus 43 yaHnP~si~a~l~al~~~~---~~~riivvf~~g~~s~r~k~~~---~~~~~~~~~-------aD--~vi~~~-~~~~-~ 105 (163)
T 3mvn_A 43 FAHHPTAITATIDALRAKV---GQQRILAVLEPRSNTMKMGVHK---HELATSLQD-------AD--SVFIYQ-PPTI-E 105 (163)
T ss_dssp CCCSHHHHHHHHHHHHHHH---TTSCEEEEECCC---------C---HHHHHHHTT-------CS--EEEEEC-C-----
T ss_pred CCCCHHHHHHHHHHHHHhc---CCCcEEEEECCCCcchhhHHHH---HHHHHHHhc-------CC--EEEEEC-CCCc-c
Confidence 5778888888888765311 333444443366543 222221 233333221 12 222233 3211 1
Q ss_pred HHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 385 LAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 385 ~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
..+.++....+.+++++ .+.++|++.+.+.++
T Consensus 106 -~~~~~~~~~~~~~~~~~---~d~~eai~~~~~~~~ 137 (163)
T 3mvn_A 106 -WQVSEVLANLAQPAISA---DDVDELVMRIVQQAK 137 (163)
T ss_dssp -CCHHHHHTTCCSCEEEE---SSHHHHHHHHHHHCC
T ss_pred -cCHHHHHhhCCCCeEEE---CCHHHHHHHHHHhCC
Confidence 12333322445555544 789999999888764
No 146
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=35.58 E-value=1.7e+02 Score=25.62 Aligned_cols=106 Identities=14% Similarity=0.158 Sum_probs=59.2
Q ss_pred cHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHH
Q 014512 280 GASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALK 359 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~ 359 (423)
|+.++ ..++..+|+ +-.++|-+.+++.+.++++-. +| +.|.+... .+....-. +.+++.++
T Consensus 104 G~~~v-a~~l~~~G~-----~v~~LG~~vp~~~l~~~~~~~------~~--d~v~lS~~--~~~~~~~~---~~~i~~l~ 164 (210)
T 1y80_A 104 GKNLV-AMMLESGGF-----TVYNLGVDIEPGKFVEAVKKY------QP--DIVGMSAL--LTTTMMNM---KSTIDALI 164 (210)
T ss_dssp HHHHH-HHHHHHTTC-----EEEECCSSBCHHHHHHHHHHH------CC--SEEEEECC--SGGGTHHH---HHHHHHHH
T ss_pred HHHHH-HHHHHHCCC-----EEEECCCCCCHHHHHHHHHHc------CC--CEEEEecc--ccccHHHH---HHHHHHHH
Confidence 54443 356666433 457889999999887776521 44 44554432 22222222 66777777
Q ss_pred HhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 360 EKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 360 ~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
+... ..+.||++ ||....+ +..+ +.|...| ..+..+|++.+-++.
T Consensus 165 ~~~~---~~~~~v~v--GG~~~~~--~~~~----~~gad~~----~~da~~av~~~~~l~ 209 (210)
T 1y80_A 165 AAGL---RDRVKVIV--GGAPLSQ--DFAD----EIGADGY----APDAASATELCRQLL 209 (210)
T ss_dssp HTTC---GGGCEEEE--ESTTCCH--HHHH----HHTCSEE----CSSHHHHHHHHHHHC
T ss_pred hcCC---CCCCeEEE--ECCCCCH--HHHH----HcCCeEE----ECCHHHHHHHHHHHh
Confidence 6531 02356555 4543332 1223 5676655 378888888877654
No 147
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=35.47 E-value=2.3e+02 Score=24.89 Aligned_cols=119 Identities=12% Similarity=0.053 Sum_probs=66.3
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+... ...+++..+ |-.+....-+.++.+.+..+++++-+++ .+|++++|+. .
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 188 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIEN--YLTPDHFLTTHEAPSSQLGAEGLAKLLL---RDSSLNALVC-------S 188 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHT--TCCCCCEEECSSCCCHHHHHHHHHHHHT---TCTTCCEEEE-------S
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHc--CCCCCccEEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------c
Confidence 57998875433221 123666664 3333222223456677766677666654 3567887773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++.+| .|+++++++.+ .++| -|+...+.. .+ +.+ .-.+.+. .-++.+..+.+++++.
T Consensus 189 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~--~~-~~~-----~p~lttv----~~~~~~~g~~a~~~l~ 248 (275)
T 3d8u_A 189 HEEIA---IGALFECHRRV-----LKVPTDIAIICLEGSS--MG-EHA-----YPSLTSA----EFDYERMGTKAAEKLL 248 (275)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEESSCCH--HH-HTS-----SSCCEEE----ECCHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEecCCch--Hh-hhc-----CCCccee----cCCHHHHHHHHHHHHH
Confidence 35566 89999999875 3444 455566642 22 111 1234332 2466777777776653
No 148
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=34.67 E-value=62 Score=24.92 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=37.2
Q ss_pred HHHHHHHHHchhCCCCCccCCCceEEecCCCHHHHHHhhccc--C--CCcEEEeeccccCcccccCeeEEeCCHHHHHHH
Q 014512 9 YDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWL--T--SCKLVVKPDMLFGKRGKSGLVALNLDLAQAATF 84 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~vp~~~~~~~~~~~~~ea~~~a~~l--g--~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~~ 84 (423)
..+|++|++. ||+.- ..-+..+ .++.+...++ | +-|+| .++ - |-|..+.++++.+++
T Consensus 18 ~~aK~~L~~~-----gi~y~--~idi~~d---~~~~~~~~~~~~G~~tVP~I-----~i~-D---g~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 18 LRLKTALTAN-----RIAYD--EVDIEHN---RAAAEFVGSVNGGNRTVPTV-----KFA-D---GSTLTNPSADEVKAK 78 (92)
T ss_dssp HHHHHHHHHT-----TCCCE--EEETTTC---HHHHHHHHHHSSSSSCSCEE-----EET-T---SCEEESCCHHHHHHH
T ss_pred HHHHHHHHhc-----CCceE--EEEcCCC---HHHHHHHHHHcCCCCEeCEE-----EEe-C---CEEEeCCCHHHHHHH
Confidence 4789999999 97653 2222222 3444444333 2 12443 331 1 234556799999988
Q ss_pred HHHHhcc
Q 014512 85 VKECLGK 91 (423)
Q Consensus 85 a~~~l~~ 91 (423)
..++.|-
T Consensus 79 L~el~gL 85 (92)
T 2lqo_A 79 LVKIAGL 85 (92)
T ss_dssp HHHHHCC
T ss_pred HHHhcCC
Confidence 8888764
No 149
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=33.77 E-value=54 Score=30.01 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCCcEEEEEe--cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEe---CCCCHHHHHHHHH
Q 014512 328 PDGRKRALVI--GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRR---GGPNYQRGLAKMR 389 (423)
Q Consensus 328 ~~~~~ilv~~--~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl---~G~~~~~a~~~l~ 389 (423)
+++++|++.+ |||.... . ..|.++++.. ++|+++.+ +|.-...|--++-
T Consensus 37 ~~~~~Ivl~inspGG~v~~---~---~~i~~~i~~~-------~~PVia~v~p~~G~AasaG~~ia~ 90 (230)
T 3viv_A 37 DNAEAIIIELDTPGGRADA---M---MNIVQRIQQS-------KIPVIIYVYPPGASAASAGTYIAL 90 (230)
T ss_dssp TTCSEEEEEEEBSCEEHHH---H---HHHHHHHHTC-------SSCEEEEECSTTCEEETHHHHHHH
T ss_pred CCCCEEEEEEeCCCcCHHH---H---HHHHHHHHhC-------CCCEEEEEecCCCEEhHHHHHHHH
Confidence 4688877654 8875321 1 5677776653 69999999 8876666655554
No 150
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=33.60 E-value=2.8e+02 Score=26.38 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=55.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec--CC-----------------------------------C
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG--GG-----------------------------------I 341 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~--gg-----------------------------------i 341 (423)
.-...+..+.+.+.+.+.++-+-+ ||++++++|-.| .+ +
T Consensus 69 ~~~~~lp~~~s~~ell~~I~~lN~----d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~ 144 (300)
T 4a26_A 69 SFNVELPEDISQEVLEVNVEKLNN----DPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPF 144 (300)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC----CCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCC
Confidence 455677788888888777776655 889999988763 22 3
Q ss_pred cchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecC
Q 014512 342 ANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYG 403 (423)
Q Consensus 342 ~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g 403 (423)
.+|| ..|+++.++++.-.. ..+.+++- .++.--...-.+|. ..|..+.++.
T Consensus 145 ~PcT-----p~gv~~lL~~~~i~l--~Gk~vvVIG~s~iVG~p~A~lL~----~~gAtVtv~~ 196 (300)
T 4a26_A 145 TPCT-----AKGVIVLLKRCGIEM--AGKRAVVLGRSNIVGAPVAALLM----KENATVTIVH 196 (300)
T ss_dssp CCHH-----HHHHHHHHHHHTCCC--TTCEEEEECCCTTTHHHHHHHHH----HTTCEEEEEC
T ss_pred CCCC-----HHHHHHHHHHcCCCC--CCCEEEEECCCchHHHHHHHHHH----HCCCeEEEEe
Confidence 3443 288888888764321 23444443 55544444444554 4677666664
No 151
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=33.48 E-value=99 Score=33.27 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=58.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
.-+|+|.+.+++.+.+++. +.+++.|.+-.. .+..-+.. ..+++.+++.+. .. +.+-.||.
T Consensus 626 eVi~lG~~v~~eeiv~aA~--------e~~adiVglSsl--~~~~~~~~---~~vi~~L~~~G~----~~--i~VivGG~ 686 (727)
T 1req_A 626 DVDVGPLFQTPEETARQAV--------EADVHVVGVSSL--AGGHLTLV---PALRKELDKLGR----PD--ILITVGGV 686 (727)
T ss_dssp EEEECCTTBCHHHHHHHHH--------HTTCSEEEEEEC--SSCHHHHH---HHHHHHHHHTTC----TT--SEEEEEES
T ss_pred EEEeCCCCCCHHHHHHHHH--------HcCCCEEEEeee--cHhHHHHH---HHHHHHHHhcCC----CC--CEEEEcCC
Confidence 3478899999998776655 345565554432 22222333 778888888752 23 34445662
Q ss_pred CHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 380 NYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
...+-...++ +.|+.-+ |++-++..+.+...++.++
T Consensus 687 ~p~~d~~~l~----~~GaD~~-f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 687 IPEQDFDELR----KDGAVEI-YTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp CCGGGHHHHH----HTTEEEE-ECTTCCHHHHHHHHHHHHH
T ss_pred CccccHHHHH----hCCCCEE-EcCCccHHHHHHHHHHHHH
Confidence 2222223455 6888654 5566888888888877664
No 152
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=32.84 E-value=3.1e+02 Score=25.67 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=73.7
Q ss_pred cEEEEEcCCcHH-HHHHH----HhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec--CCC--
Q 014512 271 RIWTMVAGGGAS-VIYAD----TVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG--GGI-- 341 (423)
Q Consensus 271 ~I~~i~nG~G~~-~~~~D----~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~--ggi-- 341 (423)
.++++--|--++ ..|.- ++... | - .--.++..+.+.+.+.+.++-+-+ ||++++++|-.| .++
T Consensus 29 ~Lavilvg~dpaS~~Yv~~k~k~~~~~--G-i-~~~~~lp~~~s~~ell~~I~~lN~----D~~v~GIlvqlPLP~~id~ 100 (276)
T 3ngx_A 29 SLKLIQIGDNEAASIYARAKIRRGKKI--G-I-AVDLEKYDDISMKDLLKRIDDLAK----DPQINGIMIENPLPKGFDY 100 (276)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHH--T-C-EEEEEEESSCCHHHHHHHHHHHHH----CTTCCEEEECSCCCTTCCH
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHC--C-e-EEEEECCCCCCHHHHHHHHHHHcC----CCCCcEEEEeCCCCCCCCH
Confidence 466665554443 33332 23332 2 2 556788899999988888887766 999999998763 543
Q ss_pred -------------------------------cchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHH
Q 014512 342 -------------------------------ANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMR 389 (423)
Q Consensus 342 -------------------------------~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~ 389 (423)
.+| |..|+++.++++. . ..+.+++- .|+.--...-++|.
T Consensus 101 ~~v~~~I~p~KDVDG~~p~n~G~l~~g~~~~~Pc-----Tp~gv~~lL~~~~--l--~Gk~vvVvG~s~iVG~plA~lL~ 171 (276)
T 3ngx_A 101 YEIVRNIPYYKDVDALSPYNQGLIALNREFLVPA-----TPRAVIDIMDYYG--Y--HENTVTIVNRSPVVGRPLSMMLL 171 (276)
T ss_dssp HHHHTTSCGGGBTTCCSHHHHHHHHTTCCSSCCH-----HHHHHHHHHHHHT--C--CSCEEEEECCCTTTHHHHHHHHH
T ss_pred HHHHhhCCCCCcccCCCccchhhhhcCCCCCCCC-----cHHHHHHHHHHhC--c--CCCEEEEEcCChHHHHHHHHHHH
Confidence 223 2379999988875 1 34454444 55544444444554
Q ss_pred hhhhhcCCceeecCC-CCCHHHHHHH
Q 014512 390 ALAEEIGLPIEVYGP-EATMTGICKQ 414 (423)
Q Consensus 390 ~~~~~~Gip~~~~g~-~~t~~~av~~ 414 (423)
..|..+.++.. ..++.++++.
T Consensus 172 ----~~gAtVtv~~~~t~~L~~~~~~ 193 (276)
T 3ngx_A 172 ----NRNYTVSVCHSKTKDIGSMTRS 193 (276)
T ss_dssp ----HTTCEEEEECTTCSCHHHHHHH
T ss_pred ----HCCCeEEEEeCCcccHHHhhcc
Confidence 46776665533 2455655544
No 153
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.28 E-value=2.6e+02 Score=24.62 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=67.6
Q ss_pred CcEEEEEcCCcH----HHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchH
Q 014512 270 GRIWTMVAGGGA----SVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFT 345 (423)
Q Consensus 270 g~I~~i~nG~G~----~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~ 345 (423)
.+|++++...+. ---..+++..+ |-.+...+ +.++.+.+.-+++++-+|+ .+|++++++. .++
T Consensus 119 ~~i~~i~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~d 185 (280)
T 3gyb_A 119 THIAHLRVGSGAGLRRFESFEATMRAH--GLEPLSND-YLGPAVEHAGYTETLALLK---EHPEVTAIFS-------SND 185 (280)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHHHT--TCCCEECC-CCSCCCHHHHHHHHHHHHH---HCTTCCEEEE-------SSH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHHHHc--CcCCCccc-ccCCCCHHHHHHHHHHHHh---CCCCCCEEEE-------CCh
Confidence 679888665543 01123556653 33322122 6677777777777776664 3678888773 125
Q ss_pred HHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 346 DVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 346 ~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
.+| .|+++++++.+ .++| -|+...+.. .+ +.+ .-++.+. .-++.+....+++++.
T Consensus 186 ~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~--~~-~~~-----~p~lttv----~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 186 ITA---IGALGAARELG-----LRVPEDLSIIGYDNTP--LA-QTR-----LINLTTI----DDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHH---HHHHHHHHHHT-----CCTTTTCEEEEESCCH--HH-HST-----TTCCCEE----ECCHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHcC-----CCCCCeeEEEEECCch--Hh-hcc-----CCCceEE----ecCHHHHHHHHHHHHH
Confidence 566 89999999986 3334 455566643 11 111 1244443 2566777777776653
No 154
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.91 E-value=2.2e+02 Score=26.07 Aligned_cols=91 Identities=8% Similarity=0.040 Sum_probs=53.2
Q ss_pred CcEEEEEcCC-cHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc
Q 014512 270 GRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342 (423)
Q Consensus 270 g~I~~i~nG~-G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~ 342 (423)
.+|++++.-. +... -..+++..+ |-+.....-+-++.+.+.-+++++-+|+ .+|++++|+.
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 245 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTES--GLPVRDSYIVEGDYTYDSGIEAVEKLLE---EDEKPTAIFV------- 245 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTT--TCCCCGGGEEECCSSHHHHHHHHHHHHH---SSSCCSEEEE-------
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------
Confidence 6798886543 3221 245677764 4332211123456677766677776664 3567888773
Q ss_pred chHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCC
Q 014512 343 NFTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPN 380 (423)
Q Consensus 343 ~~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~ 380 (423)
.++.+| -|+++++++.+ .++| -|+...+..
T Consensus 246 ~nd~~A---~g~~~al~~~G-----~~vP~disvvg~D~~~ 278 (332)
T 2hsg_A 246 GTDEMA---LGVIHGAQDRG-----LNVPNDLEIIGFDNTR 278 (332)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CCHHHHCEEEEESCCG
T ss_pred CChHHH---HHHHHHHHHcC-----CCCCCCeEEEEECChH
Confidence 235667 89999999875 3344 344566643
No 155
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=31.83 E-value=84 Score=29.84 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=19.2
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 376 RGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
..|...+++.++|++++++.|+|+.
T Consensus 68 f~Glg~~~GL~~L~~~~~e~Glp~~ 92 (288)
T 3tml_A 68 FRGLGMDEGLRILSEVKRQLGLPVL 92 (288)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCEE
T ss_pred cCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 3455568999999999999999987
No 156
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=30.96 E-value=2.1e+02 Score=25.61 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=46.3
Q ss_pred CcEEEEEcCC-cHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc
Q 014512 270 GRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342 (423)
Q Consensus 270 g~I~~i~nG~-G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~ 342 (423)
++|++++.-. +... -..+++..+ |-+.....-+-++.+.+.-+++++-+++ ..+++++|+.
T Consensus 134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 201 (289)
T 2fep_A 134 TDIAFVSGPMAEPINRSKKLQGYKRALEEA--NLPFNEQFVAEGDYTYDSGLEALQHLMS---LDKKPTAILS------- 201 (289)
T ss_dssp SSEEEEESCTTSHHHHTTHHHHHHHHHHHT--TCCCCGGGEEECCSCHHHHHHHHHHHTT---SSSCCSEEEE-------
T ss_pred CeEEEEeCCccccccHHHHHHHHHHHHHHc--CCCCChheEeeCCCCHHHHHHHHHHHHc---CCCCCCEEEE-------
Confidence 6799887543 3222 234666664 3332211112356667766666666654 3567888773
Q ss_pred chHHHHhhHHHHHHHHHHhh
Q 014512 343 NFTDVAATFNGIIQALKEKE 362 (423)
Q Consensus 343 ~~~~vaa~~~gii~a~~~~~ 362 (423)
.++.+| .|+++++++.+
T Consensus 202 ~~d~~A---~g~~~al~~~G 218 (289)
T 2fep_A 202 ATDEMA---LGIIHAAQDQG 218 (289)
T ss_dssp SSHHHH---HHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHHHHcC
Confidence 235666 89999999875
No 157
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=30.94 E-value=1.7e+02 Score=26.78 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccc-eeEEEEeCCCCHHHH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAAR-MHLYVRRGGPNYQRG 384 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~-~pivvrl~G~~~~~a 384 (423)
++-+.+.-+++++-+|+....+|++++|+ ..++.+| .|+++++++.+..- +.. +++++...+ ...+
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------~~nd~~A---~g~~~al~~~g~~v-P~d~i~vv~g~D~--~~~~ 247 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVL-------SPYDGLS---IGIISSLKGVGYGT-KDQPLPVVSGQDA--EVPS 247 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEE-------CSSHHHH---HHHHHHHHHTTCSS-SSSCCCEECCSSC--CHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEE-------ECCCchH---HHHHHHHHHcCCCC-CCCceEEEEecCC--CHHH
Confidence 44555666666666654110137788776 2236667 89999999986210 001 333334444 3455
Q ss_pred HHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 385 LAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 385 ~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
...+. .|-+.... .-++.+....+++++-
T Consensus 248 ~~~i~-----~~~~lttv--~~~~~~~g~~a~~~l~ 276 (330)
T 3uug_A 248 VKSII-----AGEQYSTI--FKDTRELAKVTVNMVN 276 (330)
T ss_dssp HHHHH-----TTSSCCEE--ECCHHHHHHHHHHHHH
T ss_pred HHHHH-----cCCceEEE--ecCHHHHHHHHHHHHH
Confidence 55554 23322211 2566776666666653
No 158
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=30.88 E-value=1.9e+02 Score=26.21 Aligned_cols=119 Identities=8% Similarity=-0.026 Sum_probs=67.0
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHH-----HhhhccCCCCcEEEEEec
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVV-----IDCATADPDGRKRALVIG 338 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~l-----l~~~~~~~~~~~ilv~~~ 338 (423)
.+|++++.-.+... -..+++..+ |..+....-..++.+.+.-+++++-+ |+ .+|.+++|+.
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~---~~~~~~ai~~--- 203 (303)
T 3kke_A 132 SRIAFISGTAIHDTAQRRKEGYLETLASA--GLRSEAAWVVDAGWEADAGSAALNTLYRGANLG---KPDGPTAVVV--- 203 (303)
T ss_dssp CSEEEEESCSSCHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTT---STTSCSEEEE---
T ss_pred CeEEEEeCCCcCccHHHHHHHHHHHHHHc--CCCCCcceEEecCCChHHHHHHHHHhcchhhhc---CCCCCcEEEE---
Confidence 57888865443221 133666664 43332222244666777777777766 53 4677888773
Q ss_pred CCCcchHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 014512 339 GGIANFTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415 (423)
Q Consensus 339 ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~ 415 (423)
.++.+| -|+++++++.+ .++| -|+...+. ..+ +.+ .-.+-+. .-++.+..+.+
T Consensus 204 ----~nd~~A---~g~~~al~~~G-----~~vP~di~vig~D~~--~~~-~~~-----~p~lttv----~~~~~~~g~~a 259 (303)
T 3kke_A 204 ----ASVNAA---VGALSTALRLG-----LRVPEDLSIVGINTT--WVS-DTV-----YPALTTV----RLPLQRLGEVA 259 (303)
T ss_dssp ----SSHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCC--HHH-HHS-----SSCCEEE----ECCHHHHHHHH
T ss_pred ----CCHHHH---HHHHHHHHHcC-----CCCCCceEEEEEcCh--hHh-hcC-----CCCeeEE----ecCHHHHHHHH
Confidence 236667 89999999986 3444 34456664 222 111 1233332 25677777777
Q ss_pred HHHHH
Q 014512 416 IECIS 420 (423)
Q Consensus 416 v~~~~ 420 (423)
++++-
T Consensus 260 v~~L~ 264 (303)
T 3kke_A 260 ADVLM 264 (303)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 159
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=30.45 E-value=1.9e+02 Score=26.78 Aligned_cols=91 Identities=8% Similarity=-0.050 Sum_probs=51.7
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+... -..+++..+ |-......-+-++.+.+.-+++++-+|+ .++++++|+. .
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 245 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFC-------G 245 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHC--CCCCChhheEeCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 67888854322211 234666664 3332211123455577766677766664 3567888773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCC
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPN 380 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~ 380 (423)
++.+| .|+++++++.+ .++| -|+...+..
T Consensus 246 nd~~A---~g~~~al~~~G-----~~vP~disvig~D~~~ 277 (340)
T 1qpz_A 246 GDIMA---MGALCAADEMG-----LRVPQDVSLIGYDNVR 277 (340)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCT
T ss_pred CHHHH---HHHHHHHHHcC-----CCCCCCeEEEeECCch
Confidence 35666 89999999875 3344 344555543
No 160
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.61 E-value=2.3e+02 Score=25.20 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=60.0
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+... -..+++..+ |-....-.-..++.+.+..+++++-+++ +++++++|+. .
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 193 (291)
T 3egc_A 126 TRIGAIVGSAGLMTSRERLKGFRAAMSAA--GLPVRQEWIAAGGVRADNGRDGAIKVLT---GADRPTALLT-------S 193 (291)
T ss_dssp CSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEEC------CCHHHHHHHHT---C-CCCSEEEE-------S
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHHHHHc--CCCCCHHHeEeCCCChhHHHHHHHHHHh---CCCCCcEEEE-------C
Confidence 57888865543221 123566663 3332211112344555544555555553 3678888773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++.+| .|+++++++.+ .++| -|+...+... + +.+ .-++.+. .-++.+..+.+++++-
T Consensus 194 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~--~-~~~-----~p~lttv----~~~~~~~g~~av~~l~ 253 (291)
T 3egc_A 194 SHRIT---EGAMQALNVLG-----LRYGPDVEIVSFDNLPW--M-AFL-----DPPLPVV----EQPTRRIGQEAMRMLI 253 (291)
T ss_dssp SHHHH---HHHHHHHHHHT-----CCBTTTBEEEEESCCGG--G-GGS-----SSCCCEE----ECCHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEEecCchh--H-hhc-----CCCceEE----EECHHHHHHHHHHHHH
Confidence 35566 89999999986 3444 3455666532 1 111 1234333 2577777777777653
No 161
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=29.60 E-value=2.2e+02 Score=25.21 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=63.7
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
++|++++.-.+... -..+++..+ |.+.....-+.++.+.+.-+++++-+++ .++++++|+. .
T Consensus 140 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 207 (296)
T 3brq_A 140 QEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA-------S 207 (296)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHTT--TCCCCGGGEECCCSSHHHHHHHHHHHHT---C--CCSEEEE-------S
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------C
Confidence 67888864433211 134666664 4333221113456666666666666654 3577888773 1
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
++.+| .++++++++.+ .++| -|+...+... + +.+. -++.+. .-++.+....+++++.
T Consensus 208 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l~ 267 (296)
T 3brq_A 208 NDDMA---IGAMKALHERG-----VAVPEQVSVIGFDDIAI--A-PYTV-----PALSSV----KIPVTEMIQEIIGRLI 267 (296)
T ss_dssp SHHHH---HHHHHHHHHHT-----CCTTTTCEEEEESCCTT--G-GGSS-----SCCEEE----ECCHHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC-----CCCCCceEEEeecCchh--h-hccC-----CCceee----eCCHHHHHHHHHHHHH
Confidence 25566 89999999875 2334 4455666532 1 1121 234333 2466777777766653
No 162
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=29.57 E-value=2.3e+02 Score=25.15 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhh
Q 014512 285 YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESK 364 (423)
Q Consensus 285 ~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~ 364 (423)
..+++.. +|-.+....-+.++.+.+.-+++++-+|+ .+|++++++ ..++.+| .|+++++++.+
T Consensus 149 f~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~-------~~~d~~a---~g~~~al~~~g-- 211 (289)
T 3g85_A 149 FIETCHK--NGIKISENHIIAAENSIHGGVDAAKKLMK---LKNTPKALF-------CNSDSIA---LGVISVLNKRQ-- 211 (289)
T ss_dssp HHHHHHH--TTCBCCGGGEEECCSSHHHHHHHHHHHTT---SSSCCSEEE-------ESSHHHH---HHHHHHHHHTT--
T ss_pred HHHHHHH--cCCCCChhheeccCCCHHHHHHHHHHHHc---CCCCCcEEE-------EcCCHHH---HHHHHHHHHcC--
Q ss_pred hhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 365 LKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 365 ~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
.++| -|+....++...+.-.-- .+.+. .-++.+..+.+++++
T Consensus 212 ---~~vP~di~vig~d~~~~~~~~~~~p------~lttv----~~~~~~~g~~a~~~l 256 (289)
T 3g85_A 212 ---ISIPDDIEIVAIGMNDREYTEFSTP------PVTIV----DIPIEEMAGTCISLV 256 (289)
T ss_dssp ---CCTTTTCEEEEEECSCHHHHHSSSS------CCEEE----ECCHHHHHHHHHHHH
T ss_pred ---CCCCCceEEEEeCCCCcchhhccCC------CCeEE----cCCHHHHHHHHHHHH
No 163
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=29.54 E-value=3.6e+02 Score=25.36 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=27.7
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG 338 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ 338 (423)
.-...+..+.+.+.+.+.++-+-+ ||++++++|-.|
T Consensus 66 ~~~~~lp~~~s~~ell~~I~~lN~----d~~v~GIlvqlP 101 (285)
T 3l07_A 66 SQVITLPEHTTESELLELIDQLNN----DSSVHAILVQLP 101 (285)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CCCCcEEEEcCC
Confidence 455677788888888777776655 899999998763
No 164
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=29.43 E-value=2e+02 Score=25.70 Aligned_cols=77 Identities=5% Similarity=-0.110 Sum_probs=45.4
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~pa-N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~ 342 (423)
.+|++++.-.+... -..+++..+ |-+.. .++ +.++.+.+.-+++++-+++ .++++++|+.
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 195 (290)
T 2rgy_A 129 RKLAVISGPFTASDNVERLDGFFDELARH--GIARDSVPL-IESDFSPEGGYAATCQLLE---SKAPFTGLFC------- 195 (290)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHTT--TCCGGGSCE-EECCSSHHHHHHHHHHHHH---HTCCCSEEEE-------
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCCCcccE-EecCCChhHHHHHHHHHHh---CCCCCcEEEE-------
Confidence 67999865433211 134566663 33321 222 2356666666666666554 3677888773
Q ss_pred chHHHHhhHHHHHHHHHHhh
Q 014512 343 NFTDVAATFNGIIQALKEKE 362 (423)
Q Consensus 343 ~~~~vaa~~~gii~a~~~~~ 362 (423)
.++.+| .|+++++++.+
T Consensus 196 ~~d~~A---~g~~~al~~~G 212 (290)
T 2rgy_A 196 ANDTMA---VSALARFQQLG 212 (290)
T ss_dssp SSHHHH---HHHHHHHHHTT
T ss_pred CCcHHH---HHHHHHHHHcC
Confidence 235666 89999999875
No 165
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=27.94 E-value=2.6e+02 Score=26.32 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc------hHHHHhhHHHHHHHHHHhhhhh---hccceeEEEEeCCC-
Q 014512 310 EGEVLQYARVVIDCATADPDGRKRALVIGGGIAN------FTDVAATFNGIIQALKEKESKL---KAARMHLYVRRGGP- 379 (423)
Q Consensus 310 ~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~------~~~vaa~~~gii~a~~~~~~~~---~~~~~pivvrl~G~- 379 (423)
.+.|.++++.+- +..+++-+|.....++ ..+.. ..+++++++..+.. .+.++||++++...
T Consensus 152 ~~~~~~aa~~~~------~g~d~iein~~sP~~~g~~~~~~~~~~---~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~ 222 (336)
T 1f76_A 152 KDDYLICMEKIY------AYAGYIAINISSPNTPGLRTLQYGEAL---DDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDL 222 (336)
T ss_dssp HHHHHHHHHHHG------GGCSEEEEECCCSSSTTGGGGGSHHHH---HHHHHHHHHHHHHHHHHHTSCCCEEEECCSCC
T ss_pred HHHHHHHHHHHh------ccCCEEEEEccCCCCCCcccccCHHHH---HHHHHHHHHHHHhhhhcccccCceEEEecCCC
Confidence 677888877542 2678888887322222 11122 46677777653110 01268999997653
Q ss_pred CHHHHHHHHHhhhhhcCCcee
Q 014512 380 NYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~Gip~~ 400 (423)
..++..++.+ ...++|+...
T Consensus 223 ~~~~~~~~a~-~l~~~Gvd~i 242 (336)
T 1f76_A 223 SEEELIQVAD-SLVRHNIDGV 242 (336)
T ss_dssp CHHHHHHHHH-HHHHTTCSEE
T ss_pred CHHHHHHHHH-HHHHcCCcEE
Confidence 3334333322 2235777543
No 166
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=27.84 E-value=3.7e+02 Score=24.95 Aligned_cols=106 Identities=10% Similarity=0.038 Sum_probs=65.5
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCC
Q 014512 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPN 380 (423)
Q Consensus 301 ~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~ 380 (423)
|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+.. +- |++-.|+++
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~eE-r~~v~~~~~~~~------~g-viaGvg~~~ 76 (293)
T 1w3i_A 10 PFTKDNRIDKEKLKIHAENLIR-----KGIDKLFVNGTTGLGPSLSPEE-KLENLKAVYDVT------NK-IIFQVGGLN 76 (293)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHTTC------SC-EEEECCCSC
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHc------CC-EEEecCCCC
Confidence 4444578888888888888875 5788888775333211111110 145566555542 12 777899999
Q ss_pred HHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 381 YQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
-+++.+..+.+. ++|. |.| |. ..|.++.++.+-..+.++
T Consensus 77 t~~ai~la~~A~-~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a~ 122 (293)
T 1w3i_A 77 LDDAIRLAKLSK-DFDIVGIASYAPYY-YP-RMSEKHLVKYFKTLCEVS 122 (293)
T ss_dssp HHHHHHHHHHGG-GSCCSEEEEECCCS-CS-SCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCCC-CC-CCCHHHHHHHHHHHHhhC
Confidence 999988777543 4563 333 21 037788888887777653
No 167
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.48 E-value=2.7e+02 Score=24.92 Aligned_cols=122 Identities=9% Similarity=-0.026 Sum_probs=62.7
Q ss_pred CcEEEEEcCCcHHHH------HHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~~------~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
++|++++...+.... ..+++..+ |-+ +.+..++.+.+..+++++-+|+ .+|++++|+. .
T Consensus 131 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--g~~---~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 195 (297)
T 3rot_A 131 KRALVLNPQPGHIGLEKRAYGIKTILQDK--GIF---FEELDVGTDPNQVQSRVKSYFK---IHPETNIIFC-------L 195 (297)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCE---EEEEECCSCHHHHHHHHHHHHH---HCTTCCEEEE-------S
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHHHhc--CCe---EEEeecCCChHHHHHHHHHHHH---hCCCCCEEEE-------c
Confidence 567776543332211 23555553 222 2223344456666666665543 3788888773 2
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
++.+| .|+++++++.+..- +.+...++...+. ..+...+. .|.+.... .-++.+....+++++
T Consensus 196 ~d~~A---~g~~~al~~~g~~v-P~~dv~vig~D~~--~~~~~~i~-----~~~~lttv--~~~~~~~g~~av~~l 258 (297)
T 3rot_A 196 TSQAL---DPLGQMLLHPDRYD-FNYQPQVYSFDKT--PNTVSLIH-----KKLVNYVM--DQQPFLMGYLSITQL 258 (297)
T ss_dssp SHHHH---HHHHHHHHSHHHHT-CCCCCEEEEECCC--HHHHHHHH-----TTSCCEEE--CCCHHHHHHHHHHHH
T ss_pred CCcch---HHHHHHHHhcCCcc-CCCceEEEEeCCC--HHHHHHHH-----cCCceEEE--ecChHHHHHHHHHHH
Confidence 25666 89999999886310 0112234446653 34444544 24322221 256667666666654
No 168
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=27.45 E-value=2e+02 Score=25.62 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=39.6
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
++.+.+|..=+-|..++..+....|..++..|...++++.++++.+
T Consensus 96 ll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~ 141 (215)
T 3ezx_A 96 ITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK 141 (215)
T ss_dssp EEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH
T ss_pred EEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH
Confidence 5556888888899999998888999999999999999998888765
No 169
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=27.36 E-value=4.1e+02 Score=25.54 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=22.5
Q ss_pred eCCCCHHH----HHHHHHhhhhhcCCceeecCCC
Q 014512 376 RGGPNYQR----GLAKMRALAEEIGLPIEVYGPE 405 (423)
Q Consensus 376 l~G~~~~~----a~~~l~~~~~~~Gip~~~~g~~ 405 (423)
++|.+.++ |+++-++++++.|+|+|.||..
T Consensus 95 l~~~tmeec~~lA~~~g~~i~~~l~VPVyLYg~A 128 (325)
T 1qd1_A 95 VRGVTMDECVRCAQAFGQRLAEELGVPVYLYGEA 128 (325)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCcEEeehhh
Confidence 55666666 5666667777899999999955
No 170
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=27.30 E-value=4e+02 Score=25.12 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=59.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cCC---------------------------------Ccch
Q 014512 300 NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI--GGG---------------------------------IANF 344 (423)
Q Consensus 300 N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~gg---------------------------------i~~~ 344 (423)
--.++..+.+.+.+.+.++-+-+ ||++++|+|-. |.+ +.+|
T Consensus 66 ~~~~lp~~~s~~ell~~I~~lN~----D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g~~~~~Pc 141 (288)
T 1b0a_A 66 RSYDLPETTSEAELLELIDTLNA----DNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPC 141 (288)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTTCCSSCCH
T ss_pred EEEECCCCCCHHHHHHHHHHhcC----CCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCCCCCCCCC
Confidence 44678889999988777776655 99999999986 333 4455
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCC-CCHHHHHH
Q 014512 345 TDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPE-ATMTGICK 413 (423)
Q Consensus 345 ~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~-~t~~~av~ 413 (423)
| .+|+++.++.+.-.. ..+.+++- .|+.--...-++|. ..|-.+++.... .++.+.++
T Consensus 142 T-----p~gi~~ll~~~~i~l--~gk~vvVIG~s~iVG~p~A~lL~----~~gAtVtv~hs~t~~L~~~~~ 201 (288)
T 1b0a_A 142 T-----PRGIVTLLERYNIDT--FGLNAVVIGASNIVGRPMSMELL----LAGCTTTVTHRFTKNLRHHVE 201 (288)
T ss_dssp H-----HHHHHHHHHHTTCCC--TTCEEEEECCCTTTHHHHHHHHH----TTTCEEEEECSSCSCHHHHHH
T ss_pred c-----HHHHHHHHHHcCCCC--CCCEEEEECCChHHHHHHHHHHH----HCCCeEEEEeCCchhHHHHhc
Confidence 4 389999988865321 22334443 44332344444554 456655554322 34445444
No 171
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.99 E-value=2.9e+02 Score=25.38 Aligned_cols=78 Identities=14% Similarity=-0.021 Sum_probs=47.3
Q ss_pred CcEEEEEcCCcHHH-----HHHHHhhccCCCCCC-CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV-----IYADTVGDLGYASEL-GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~-----~~~D~l~~~g~gg~p-aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-..... -..+++..+ |-.+ ...+-..++.+.+.-+++++-+|+ .+|++++|+. .
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 246 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAA--DCRDAGLEWLDPQPSSMQMGADMLDRALA---ERPDCDALFC-------C 246 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHT--TCCCGGGEEEECSCCCHHHHHHHHHHHHH---HCTTCCEEEE-------S
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHC--CCCCCChheEecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 57988864432221 134566663 3322 222233567777777777776664 3677888772 2
Q ss_pred hHHHHhhHHHHHHHHHHhh
Q 014512 344 FTDVAATFNGIIQALKEKE 362 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~ 362 (423)
++.+| -|+++++++.+
T Consensus 247 nD~~A---~g~~~al~~~G 262 (339)
T 3h5o_A 247 NDDLA---IGALARSQQLG 262 (339)
T ss_dssp SHHHH---HHHHHHHHHTT
T ss_pred ChHHH---HHHHHHHHHcC
Confidence 36677 89999999986
No 172
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=26.90 E-value=3.8e+02 Score=24.86 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=61.3
Q ss_pred HHHHhhccCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhh
Q 014512 285 YADTVGDLGYASELG-NYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKES 363 (423)
Q Consensus 285 ~~D~l~~~g~gg~pa-N~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~ 363 (423)
..+++..+ |-.+. .++-..++.+.+.-+++++.+|+ .+|.+++||. .++.+| -|+++++++.+
T Consensus 228 f~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~nD~~A---~g~~~al~~~G- 291 (366)
T 3h5t_A 228 AMEVFIEA--GIDPGTVPIMECWINNRQHNFEVAKELLE---THPDLTAVLC-------TVDALA---FGVLEYLKSVG- 291 (366)
T ss_dssp HHHHHHHH--TCCGGGSCEEEESSCCHHHHHHHHHHHHH---HCTTCCEEEE-------SSHHHH---HHHHHHHHHTT-
T ss_pred HHHHHHHC--CCCCCcceEEEcCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------CCcHHH---HHHHHHHHHcC-
Confidence 45777774 33322 13334567777777777777665 3677888773 235666 89999999986
Q ss_pred hhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 364 KLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 364 ~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
.++| -|+...+.. .+. . .++.+. .-++.+..+.|++++-
T Consensus 292 ----~~vP~disvigfD~~~--~~~---~-----~~lttv----~q~~~~~G~~Av~~L~ 333 (366)
T 3h5t_A 292 ----KSAPADLSLTGFDGTH--MAL---A-----RDLTTV----IQPNKLKGFKAGETLL 333 (366)
T ss_dssp ----CCTTTTCEEEEEECCH--HHH---H-----TTCCEE----ECCHHHHHHHHHHHHH
T ss_pred ----CCCCCceEEEEECCCh--hhc---C-----CCccEE----EeCHHHHHHHHHHHHH
Confidence 3444 355566643 222 1 245443 2577777777777653
No 173
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=26.83 E-value=3.7e+02 Score=24.85 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=65.1
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCC
Q 014512 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPN 380 (423)
Q Consensus 301 ~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~ 380 (423)
|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-.... -..++++..+.. +- |++-.|+++
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~------~g-ViaGvg~~~ 76 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLE-----KGIDAIFVNGTTGLGPALSKDE-KRQNLNALYDVT------HK-LIFQVGSLN 76 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHTTTC------SC-EEEECCCSC
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh------CC-eEEeeCCCC
Confidence 4444578888988888888875 5788888776333221111110 144555555442 12 777899999
Q ss_pred HHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHHHhc
Q 014512 381 YQRGLAKMRALAEEIGL-------PIEVYGPEATMTGICKQAIECISAA 422 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~Gi-------p~~~~g~~~t~~~av~~~v~~~~~~ 422 (423)
-+++.+..+.+. ++|. |.| +. -.|.++.++.+-..+.++
T Consensus 77 t~~ai~la~~A~-~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a~ 122 (288)
T 2nuw_A 77 LNDVMELVKFSN-EMDILGVSSHSPYY-FP-RLPEKFLAKYYEEIARIS 122 (288)
T ss_dssp HHHHHHHHHHHH-TSCCSEEEECCCCS-SC-SCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCcC-CC-CCCHHHHHHHHHHHHHhc
Confidence 898888776543 4562 333 21 037788888887777653
No 174
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=26.69 E-value=3.6e+02 Score=24.48 Aligned_cols=87 Identities=15% Similarity=0.015 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHH
Q 014512 306 GAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGL 385 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~ 385 (423)
++-+.+.-+++++-+|+ ++|++++|+. .++.+| .|+++++++.+ . .++ .|+...+ ..+..
T Consensus 169 ~~~~~~~~~~~~~~ll~---~~~~~~aI~~-------~nD~~A---~g~~~al~~~G-~---~dv-~VvG~D~--~~~~~ 228 (316)
T 1tjy_A 169 GYNDATKSLQTAEGIIK---AYPDLDAIIA-------PDANAL---PAAAQAAENLK-R---NNL-AIVGFST--PNVMR 228 (316)
T ss_dssp CTTCHHHHHHHHHHHHH---HCSSCCEEEE-------CSTTHH---HHHHHHHHHTT-C---CSC-EEEEBCC--HHHHH
T ss_pred CCCCHHHHHHHHHHHHH---hCCCCCEEEE-------CCCccH---HHHHHHHHHcC-C---CCE-EEEEeCC--CHHHH
Confidence 45566666666665554 3677887773 225566 89999999875 2 123 3444444 34555
Q ss_pred HHHHhhhhhcC-CceeecCCCCCHHHHHHHHHHHHH
Q 014512 386 AKMRALAEEIG-LPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 386 ~~l~~~~~~~G-ip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+.+. .| +.+.++ -++.+....+++++.
T Consensus 229 ~~i~-----~g~l~ttv~---~~~~~~g~~a~~~l~ 256 (316)
T 1tjy_A 229 PYVQ-----RGTVKEFGL---WDVVQQGKISVYVAN 256 (316)
T ss_dssp HHHH-----HTSCSEEEE---CCHHHHHHHHHHHHH
T ss_pred HHHH-----CCCccEEEe---cCHHHHHHHHHHHHH
Confidence 6665 35 533333 466766666666553
No 175
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=26.58 E-value=4.1e+02 Score=25.01 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=59.1
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEec--CCC---------------------------------cc
Q 014512 299 GNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIG--GGI---------------------------------AN 343 (423)
Q Consensus 299 aN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~--ggi---------------------------------~~ 343 (423)
.-...+..+.+.+.+.+.++-+-+ ||++++++|-.| .++ .+
T Consensus 67 ~~~~~lp~~~s~~ell~~I~~lN~----d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g~l~~g~~~~~P 142 (286)
T 4a5o_A 67 SQAYDLPAETSQDDLLALIDRLND----DPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQRMPLLRP 142 (286)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHTTCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhHHHhcCCCCCCC
Confidence 455677888898888777776665 999999998763 432 23
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCC-CCCHHHHHH
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGP-EATMTGICK 413 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~-~~t~~~av~ 413 (423)
| |..|+++.++++.-.. ..+.+++- .++.--...-.+|. ..|..+.+... ..++++.++
T Consensus 143 c-----Tp~gv~~lL~~~~i~l--~Gk~vvVvGrs~iVG~plA~lL~----~~gAtVtv~hs~T~~L~~~~~ 203 (286)
T 4a5o_A 143 C-----TPKGIMTLLASTGADL--YGMDAVVVGASNIVGRPMALELL----LGGCTVTVTHRFTRDLADHVS 203 (286)
T ss_dssp H-----HHHHHHHHHHHTTCCC--TTCEEEEECTTSTTHHHHHHHHH----HTTCEEEEECTTCSCHHHHHH
T ss_pred C-----CHHHHHHHHHHhCCCC--CCCEEEEECCCchhHHHHHHHHH----HCCCeEEEEeCCCcCHHHHhc
Confidence 3 2388888888764321 23444443 55543344444444 45665554432 234554443
No 176
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=26.41 E-value=1.2e+02 Score=28.58 Aligned_cols=73 Identities=10% Similarity=0.034 Sum_probs=40.9
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCcEEE--EEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCC
Q 014512 302 AEYSGAPNEGEVLQYARVVIDCATADPDGRKRA--LVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGP 379 (423)
Q Consensus 302 lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~il--v~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~ 379 (423)
+-++|..+.+........++.+-..|+ .+.|+ ||.|||-.. +. ..|.++++.+ +.||++.++|.
T Consensus 85 I~l~G~I~d~~a~~iiaqL~~l~~ed~-~k~I~L~INSPGGsV~----ag--~aIyd~I~~~-------k~pV~t~v~G~ 150 (277)
T 1tg6_A 85 VCVMGPIDDSVASLVIAQLLFLQSESN-KKPIHMYINSPGGVVT----AG--LAIYDTMQYI-------LNPICTWCVGQ 150 (277)
T ss_dssp EEEESSBCHHHHHHHHHHHHHHHHHCS-SSCEEEEEEECCBCHH----HH--HHHHHHHHHS-------CSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHhcCC-CCCEEEEEECCCCCHH----HH--HHHHHHHHhc-------CCCEEEEEccE
Confidence 556677776655554444442212244 45444 444998642 22 7788887775 46788877775
Q ss_pred CHHHHHHHH
Q 014512 380 NYQRGLAKM 388 (423)
Q Consensus 380 ~~~~a~~~l 388 (423)
-+..|-=++
T Consensus 151 AASaG~~Ia 159 (277)
T 1tg6_A 151 AASMGSLLL 159 (277)
T ss_dssp EETHHHHHH
T ss_pred eHHHHHHHH
Confidence 544443333
No 177
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=26.41 E-value=1.6e+02 Score=27.49 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=39.4
Q ss_pred EEEe-cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-------------eCCCCHHHHHHHHHhhhhhcCCce
Q 014512 334 ALVI-GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-------------RGGPNYQRGLAKMRALAEEIGLPI 399 (423)
Q Consensus 334 lv~~-~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-------------l~G~~~~~a~~~l~~~~~~~Gip~ 399 (423)
+|+. |-.+-+.+.+ --+.+.+++..... ..++++-| ..|...++|+++|+++.++.|+|+
T Consensus 5 ~viaGPCsie~~~~~----~~~A~~l~~~~~~~--~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~ 78 (267)
T 2nwr_A 5 LVIAGPNAIESEELL----LKVGEEIKRLSEKF--KEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKI 78 (267)
T ss_dssp EEEEECSBCSCHHHH----HHHHHHHHHHHHHC--TTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEE
T ss_pred EEEEcCCCcCCHHHH----HHHHHHHHHHHHhh--cCccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeE
Confidence 3444 7777765443 33444555544321 14666665 345557999999999999999998
Q ss_pred e
Q 014512 400 E 400 (423)
Q Consensus 400 ~ 400 (423)
.
T Consensus 79 ~ 79 (267)
T 2nwr_A 79 T 79 (267)
T ss_dssp E
T ss_pred E
Confidence 6
No 178
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=26.17 E-value=2.4e+02 Score=25.00 Aligned_cols=91 Identities=8% Similarity=-0.050 Sum_probs=49.1
Q ss_pred CcEEEEEcCCcHH------HHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~------~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+.. --..+++..+ |-+.....-.-++-+.+..+++++-+++ .++++++|+. .
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 194 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFC-------G 194 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHC--CCCCChHHeEeCCCCHHHHHHHHHHHHh---CCCCCCEEEE-------C
Confidence 5787775332211 1234666664 3332211122345566666666666554 3577888773 1
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCC
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPN 380 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~ 380 (423)
++.+| .++++++++.+ .++| -|+...+..
T Consensus 195 ~d~~a---~g~~~al~~~G-----~~vP~di~vvg~d~~~ 226 (289)
T 1dbq_A 195 GDIMA---MGALCAADEMG-----LRVPQDVSLIGYDNVR 226 (289)
T ss_dssp CHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCT
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEeeCCch
Confidence 25566 89999999875 2334 344566654
No 179
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=25.04 E-value=2.3e+02 Score=21.53 Aligned_cols=71 Identities=10% Similarity=-0.082 Sum_probs=36.6
Q ss_pred CcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHH
Q 014512 330 GRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMT 409 (423)
Q Consensus 330 ~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~ 409 (423)
.+.++++ ++++...+.... ..+++..++... .+..+. +.|.+ ..-+++|+..+-..-+++| .|.+
T Consensus 43 ~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~l~~~gl~~~~~i~-----~~~~ 107 (116)
T 1th8_B 43 IRHIVLN-LGQLTFMDSSGL--GVILGRYKQIKN----VGGQMV--VCAVS-PAVKRLFDMSGLFKIIRVE-----ADEQ 107 (116)
T ss_dssp CCEEEEE-EEEEEEECHHHH--HHHHHHHHHHHH----TTCCEE--EESCC-HHHHHHHHHHTGGGTSEEE-----SSHH
T ss_pred CcEEEEE-CCCCcEEccHHH--HHHHHHHHHHHH----hCCeEE--EEeCC-HHHHHHHHHhCCceeEEEe-----CCHH
Confidence 4545444 455555444332 555555555432 234444 34444 4566777733222235555 8999
Q ss_pred HHHHHH
Q 014512 410 GICKQA 415 (423)
Q Consensus 410 ~av~~~ 415 (423)
+|+..+
T Consensus 108 ~Al~~~ 113 (116)
T 1th8_B 108 FALQAL 113 (116)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988653
No 180
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=25.03 E-value=2.2e+02 Score=24.47 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=66.5
Q ss_pred HHHHHHHHhhccCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---cCCCcchHHHHhhHHHHH
Q 014512 281 ASVIYADTVGDLGYASELGN--YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI---GGGIANFTDVAATFNGII 355 (423)
Q Consensus 281 ~~~~~~D~l~~~g~gg~paN--~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~ggi~~~~~vaa~~~gii 355 (423)
+---+.|.|..+ |.+..| -+++.|.-. +--+++.+.+ ..+.|+++..- =|+...++-|+ +.+.
T Consensus 28 Ll~gA~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VIrG~T~Hfd~Va---~~vs 95 (158)
T 1di0_A 28 ARKSFVAELAAK--TGGSVEVEIFDVPGAYE---IPLHAKTLAR----TGRYAAIVGAAFVIDGGIYDHDFVA---TAVI 95 (158)
T ss_dssp HHHHHHHHHHHH--HTTSEEEEEEEESSGGG---HHHHHHHHHH----TSCCSEEEEEEECCCCSSBCCHHHH---HHHH
T ss_pred HHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeccccCCCcHHHHHH---HHHH
Confidence 444567888885 444433 334444333 5556676665 56789988774 48888887777 6666
Q ss_pred HHHHHhhhhhhccceeEEEE-eCCCCHHHHHH--HHHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 356 QALKEKESKLKAARMHLYVR-RGGPNYQRGLA--KMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 356 ~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~--~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
+.+-+..-. .++||.-. +.-.+.+++.+ -+.. ...| +-=.||+..++++++
T Consensus 96 ~Gl~~v~L~---~~vPV~~GVLT~~~~eqA~er~~~~~--~~~~---------nKG~eaA~aal~m~~ 149 (158)
T 1di0_A 96 NGMMQVQLE---TEVPVLSVVLTPHHFHESKEHHDFFH--AHFK---------VKGVEAAHAALQIVS 149 (158)
T ss_dssp HHHHHHHHH---HCCCEEEEEECBSSCCCSHHHHHHHH--HHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhhhhc--chhc---------chHHHHHHHHHHHHH
Confidence 666655422 47997776 55555443322 1110 0001 122588888888875
No 181
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=24.94 E-value=87 Score=26.75 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=21.4
Q ss_pred ceeEEEEeCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 369 RMHLYVRRGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 369 ~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
++|+++.=+|.....+.+.++++.+..|+|++
T Consensus 35 krPvil~G~g~~~~~a~~~l~~lae~~~iPV~ 66 (170)
T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAANIPIA 66 (170)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEECCCccchhHHHHHHHHHHHhCCCEE
Confidence 57777665554445566666667777888876
No 182
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.77 E-value=1.9e+02 Score=26.86 Aligned_cols=119 Identities=17% Similarity=0.106 Sum_probs=66.1
Q ss_pred CcEEEEEcCC--cHH-----HHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc
Q 014512 270 GRIWTMVAGG--GAS-----VIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342 (423)
Q Consensus 270 g~I~~i~nG~--G~~-----~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~ 342 (423)
.+|++++... ... --..+++..+ |-.+....-+.++.+.+.-+++++-+|+ .+|++++|+.
T Consensus 186 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 253 (344)
T 3kjx_A 186 RRIGFMGTKMPLDYRARKRFEGFTEVLGKN--GVEIEDREFYSGGSALAKGREMTQAMLE---RSPDLDFLYY------- 253 (344)
T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHT--TCCCSCEEECSSCCCHHHHHHHHHHHHH---HSTTCCEEEE-------
T ss_pred CeEEEEecCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHh---cCCCCCEEEE-------
Confidence 4677776442 111 1234667664 4333333334577777777777776664 3677888772
Q ss_pred chHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHH
Q 014512 343 NFTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419 (423)
Q Consensus 343 ~~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~ 419 (423)
.++.+| -|+++++++.+ .++| -|+...+... + +.+ .-.+.+. .-++++..+.+++++
T Consensus 254 ~nd~~A---~g~~~al~~~g-----~~vP~disvvg~D~~~~--~-~~~-----~p~lttv----~~~~~~~g~~av~~l 313 (344)
T 3kjx_A 254 SNDMIA---AGGLLYLLEQG-----IDIPGQIGLAGFNNVEL--L-QGL-----PRKLATM----DACRLEIGRKAAEII 313 (344)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CCTTTTCEEECSBCCGG--G-GGS-----SSCCBEE----BCCHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcC-----CCCCCceEEEEECChHH--H-hcc-----CCCccEE----eCCHHHHHHHHHHHH
Confidence 236667 89999999986 3455 3344555321 1 011 1133332 256677777777665
Q ss_pred H
Q 014512 420 S 420 (423)
Q Consensus 420 ~ 420 (423)
-
T Consensus 314 ~ 314 (344)
T 3kjx_A 314 A 314 (344)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=24.49 E-value=1.4e+02 Score=28.44 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=34.5
Q ss_pred cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-------------eCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 338 GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-------------RGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 338 ~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-------------l~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
|-.+-+-+.+- -+.+.+++.... ..++++.| ..|...++|.++|++++++.|+|+.
T Consensus 48 PCsies~e~~~----~~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~ 116 (298)
T 3fs2_A 48 PCQMETRDHAF----EMAGRLKEMTDK---LGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVL 116 (298)
T ss_dssp CSBCCCHHHHH----HHHHHHHHHHHH---HTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCcCCCHHHHH----HHHHHHHHHHHH---cCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 77776644433 344445544321 23555444 3455578999999999999999987
No 184
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=24.32 E-value=4e+02 Score=24.16 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=34.5
Q ss_pred ceeEEEEeCCCCHHHHHHHHHhhhhhc-CCceeecCCCCCHHHHHHHHHHHHHhcC
Q 014512 369 RMHLYVRRGGPNYQRGLAKMRALAEEI-GLPIEVYGPEATMTGICKQAIECISAAA 423 (423)
Q Consensus 369 ~~pivvrl~G~~~~~a~~~l~~~~~~~-Gip~~~~g~~~t~~~av~~~v~~~~~~~ 423 (423)
++|+|+.--|-+.+ -.+.|+++.+++ ++|+++- .++.--+..++++++++|
T Consensus 69 g~~~VigTTG~~~e-~~~~l~~aa~~~~~~~vv~a---~N~siGv~ll~~l~~~aa 120 (245)
T 1p9l_A 69 GIHAVVGTTGFTAE-RFQQVESWLVAKPNTSVLIA---PNFAIGAVLSMHFAKQAA 120 (245)
T ss_dssp TCEEEECCCCCCHH-HHHHHHHHHHTSTTCEEEEC---SCCCHHHHHHHHHHHHHG
T ss_pred CCCEEEcCCCCCHH-HHHHHHHHHHhCCCCCEEEE---CCccHHHHHHHHHHHHHH
Confidence 58999987676654 456676666555 8887532 566666777777777653
No 185
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=24.16 E-value=4.3e+02 Score=24.46 Aligned_cols=127 Identities=9% Similarity=-0.069 Sum_probs=64.9
Q ss_pred cEEEEEcCCcHHHHHHHHhhccCCCCCCCceeec-----------cCC---CCHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 014512 271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEY-----------SGA---PNEGEVLQYARVVIDCATADPDGRKRALV 336 (423)
Q Consensus 271 ~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~-----------gG~---a~~~~~~~a~~~ll~~~~~~~~~~~ilv~ 336 (423)
|||+|+.||-.+-..+.++... +.+..--+|. ++. .+.+.+.+.++-+.+ .++++|+|+|-
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~---~~~~vD~V~I~ 79 (312)
T 3o9z_A 5 RFALTGLAGYIAPRHLKAIKEV--GGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRD---RGEGVDYLSIA 79 (312)
T ss_dssp EEEEECTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHH---TTCCCSEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHhC--CCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcc---cCCCCcEEEEC
Confidence 6899988654555667777663 3332111111 111 122333222222221 27899988876
Q ss_pred ecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 014512 337 IGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415 (423)
Q Consensus 337 ~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~ 415 (423)
.|... . . +-+.++++. +++|++= =-..+.++++++++ +.++.|+.+.+. ...-...++..+
T Consensus 80 tP~~~-H-~------~~~~~al~a--------GkhVl~EKPla~~~~ea~~l~~-~a~~~g~~~~v~-~~~R~~p~~~~~ 141 (312)
T 3o9z_A 80 SPNHL-H-Y------PQIRMALRL--------GANALSEKPLVLWPEEIARLKE-LEARTGRRVYTV-LQLRVHPSLLAL 141 (312)
T ss_dssp SCGGG-H-H------HHHHHHHHT--------TCEEEECSSSCSCHHHHHHHHH-HHHHHCCCEEEC-CGGGGCHHHHHH
T ss_pred CCchh-h-H------HHHHHHHHC--------CCeEEEECCCCCCHHHHHHHHH-HHHHcCCEEEEE-eehhcCHHHHHH
Confidence 66432 1 1 333444443 4666653 33568899988876 445678876432 122233445555
Q ss_pred HHHHH
Q 014512 416 IECIS 420 (423)
Q Consensus 416 v~~~~ 420 (423)
.++++
T Consensus 142 k~~i~ 146 (312)
T 3o9z_A 142 KERLG 146 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 186
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=23.72 E-value=4.5e+02 Score=24.45 Aligned_cols=128 Identities=8% Similarity=-0.096 Sum_probs=65.2
Q ss_pred cEEEEEcCCcHHHHHHHHhhccCCCCCCCceeec-----------cCC---CCHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 014512 271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEY-----------SGA---PNEGEVLQYARVVIDCATADPDGRKRALV 336 (423)
Q Consensus 271 ~I~~i~nG~G~~~~~~D~l~~~g~gg~paN~lD~-----------gG~---a~~~~~~~a~~~ll~~~~~~~~~~~ilv~ 336 (423)
|||+|+-||-.+-.-+.++... +.+..--+|. ++. .+.+.+.+.++.+++ ..++++|+|+|-
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~--~~~~~vD~V~I~ 80 (318)
T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDT--GNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKR--DSATALDYVSIC 80 (318)
T ss_dssp EEEEETTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTT--STTTSCCEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHhC--CCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhh--ccCCCCcEEEEC
Confidence 6888877554566667777663 3332111111 111 123333322233321 027899988876
Q ss_pred ecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 014512 337 IGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-RGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415 (423)
Q Consensus 337 ~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~ 415 (423)
.|...- . +-+.++++. +++|++= =-..+.++++++++ +.++.|+.+.+. ...-...++..+
T Consensus 81 tP~~~H--~------~~~~~al~a--------GkhVl~EKPla~~~~ea~~l~~-~a~~~g~~~~v~-~~~R~~p~~~~~ 142 (318)
T 3oa2_A 81 SPNYLH--Y------PHIAAGLRL--------GCDVICEKPLVPTPEMLDQLAV-IERETDKRLYNI-LQLRHHQAIIAL 142 (318)
T ss_dssp SCGGGH--H------HHHHHHHHT--------TCEEEECSSCCSCHHHHHHHHH-HHHHHTCCEEEC-CGGGGCHHHHHH
T ss_pred CCcHHH--H------HHHHHHHHC--------CCeEEEECCCcCCHHHHHHHHH-HHHHhCCEEEEE-EhhhcCHHHHHH
Confidence 664321 1 333444443 4666664 33568899988876 445678866431 222233445555
Q ss_pred HHHHH
Q 014512 416 IECIS 420 (423)
Q Consensus 416 v~~~~ 420 (423)
.++++
T Consensus 143 k~~i~ 147 (318)
T 3oa2_A 143 KDKVA 147 (318)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 187
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=23.58 E-value=1.2e+02 Score=25.70 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=35.5
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
++.+.+|..-+-+..++..+....|..+...|...++++.++.+.+
T Consensus 22 lla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~ 67 (161)
T 2yxb_A 22 LVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ 67 (161)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh
Confidence 5556888777788888887777888888878877888888777654
No 188
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=23.56 E-value=1.2e+02 Score=23.42 Aligned_cols=41 Identities=7% Similarity=-0.115 Sum_probs=30.5
Q ss_pred EEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHH
Q 014512 334 ALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMR 389 (423)
Q Consensus 334 lv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~ 389 (423)
.+..|....++ +.|++.+++ ++||++-+.+...++|+|++.
T Consensus 8 vv~~P~sy~Da-------~~I~d~Lr~--------~~~VvvNL~~ld~~~AqRivD 48 (87)
T 3p04_A 8 VPVELHSFEDA-------QVIGGAFRD--------GDAVVFDMSLLSREEARRIVD 48 (87)
T ss_dssp EEEECSSGGGH-------HHHHHHHHT--------TCCEEEECTTSCHHHHHHHHH
T ss_pred EEEecCcHHHH-------HHHHHHHHC--------CCEEEEECCCCCHHHHHHHHH
Confidence 34457665443 556667665 488999999999999999985
No 189
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=23.10 E-value=3.9e+02 Score=24.33 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=51.0
Q ss_pred eEecCCCcEEEEEcC-CcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCc
Q 014512 264 TVLNPKGRIWTMVAG-GGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342 (423)
Q Consensus 264 ~~v~l~g~I~~i~nG-~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~ 342 (423)
+|..|+|++++|+.| .|++-.+.-.+... |.+.. .-+-+.++..+..+.+-+ .+.++..+ ..=++
T Consensus 1 Sy~sL~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv-----~~~~~~~~~~~~~~~i~~-----~g~~~~~~--~~Dvt 66 (254)
T 4fn4_A 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALN--DSIVV-----AVELLEDRLNQIVQELRG-----MGKEVLGV--KADVS 66 (254)
T ss_dssp CCGGGTTCEEEEETTTSHHHHHHHHHHHHT--TCEEE-----EEESCHHHHHHHHHHHHH-----TTCCEEEE--ECCTT
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEE-----EEECCHHHHHHHHHHHHh-----cCCcEEEE--EccCC
Confidence 467789999999876 47888888888774 44322 223456666666665432 33443332 34455
Q ss_pred chHHHHhhHHHHHHHHHHhhhhhhccceeEEEE
Q 014512 343 NFTDVAATFNGIIQALKEKESKLKAARMHLYVR 375 (423)
Q Consensus 343 ~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr 375 (423)
+.+++. +.+-++.++++ ++-++|.
T Consensus 67 ~~~~v~---~~~~~~~~~~G------~iDiLVN 90 (254)
T 4fn4_A 67 KKKDVE---EFVRRTFETYS------RIDVLCN 90 (254)
T ss_dssp SHHHHH---HHHHHHHHHHS------CCCEEEE
T ss_pred CHHHHH---HHHHHHHHHcC------CCCEEEE
Confidence 655554 33333333443 3456665
No 190
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=22.94 E-value=1.2e+02 Score=31.76 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCcEEEEEe--cC-CCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHH
Q 014512 308 PNEGEVLQYARVVIDCATADPDGRKRALVI--GG-GIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~--~g-gi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a 384 (423)
.+.+.+.++++...+ |+++++|++.+ || |-.. + .+.|-+++++++. .++|+++...+ +..+
T Consensus 70 ~~~~~i~~~L~~a~~----d~~ik~I~L~inspGgG~v~----~--~~~I~~~i~~~k~----~gkpvva~~~~--aas~ 133 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKD----DRNITGIVMDLKNFAGGDQP----S--MQYIGKALKEFRD----SGKPVYAVGEN--YSQG 133 (593)
T ss_dssp EEHHHHHHHHHHHHH----CTTCCCEEEECTEEEECCHH----H--HHHHHHHHHHHHH----TTCCEEEEESC--EEHH
T ss_pred cCHHHHHHHHHHHHh----CCCceEEEEEeCCCCCCcHH----H--HHHHHHHHHHHHh----cCCeEEEEEcc--chhH
Confidence 466777777777666 99999999987 66 3221 1 1566677777653 35888886433 3344
Q ss_pred HHHHH
Q 014512 385 LAKMR 389 (423)
Q Consensus 385 ~~~l~ 389 (423)
-=+|.
T Consensus 134 ~y~lA 138 (593)
T 3bf0_A 134 QYYLA 138 (593)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34444
No 191
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=22.41 E-value=3.1e+02 Score=25.36 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=45.2
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCc-EEEEEecCCCc--------chHHHHhhHHHHHHHHHHhhhhhhccceeEEE
Q 014512 304 YSGAPNEGEVLQYARVVIDCATADPDGR-KRALVIGGGIA--------NFTDVAATFNGIIQALKEKESKLKAARMHLYV 374 (423)
Q Consensus 304 ~gG~a~~~~~~~a~~~ll~~~~~~~~~~-~ilv~~~ggi~--------~~~~vaa~~~gii~a~~~~~~~~~~~~~pivv 374 (423)
++| .+.+.+.++++.+.+ -..+ ++-+|+..-.+ +.+. . ..+++++++. .++||++
T Consensus 100 i~g-~~~~~~~~~a~~~~~-----~g~d~~iein~~~P~~~g~~~~g~~~e~-~---~~iv~~vr~~------~~~Pv~v 163 (311)
T 1jub_A 100 IAG-MSAAENIAMLKKIQE-----SDFSGITELNLSCPNVPGEPQLAYDFEA-T---EKLLKEVFTF------FTKPLGV 163 (311)
T ss_dssp ECC-SSHHHHHHHHHHHHH-----SCCCSEEEEESCCCCSSSCCCGGGCHHH-H---HHHHHHHTTT------CCSCEEE
T ss_pred cCC-CCHHHHHHHHHHHHh-----cCCCeEEEEeccCCCCCCcccccCCHHH-H---HHHHHHHHHh------cCCCEEE
Confidence 443 577889999998764 4568 88888721111 2222 2 4456666554 3689999
Q ss_pred EeCCC-CHHHHHHHHHhhhhhcCCce
Q 014512 375 RRGGP-NYQRGLAKMRALAEEIGLPI 399 (423)
Q Consensus 375 rl~G~-~~~~a~~~l~~~~~~~Gip~ 399 (423)
++... ..++..++. +...++|+..
T Consensus 164 Ki~~~~~~~~~~~~a-~~~~~~G~d~ 188 (311)
T 1jub_A 164 KLPPYFDLVHFDIMA-EILNQFPLTY 188 (311)
T ss_dssp EECCCCSHHHHHHHH-HHHTTSCCCE
T ss_pred EECCCCCHHHHHHHH-HHHHHcCCcE
Confidence 97654 333332322 2333677653
No 192
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.35 E-value=82 Score=25.96 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=36.9
Q ss_pred EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 014512 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIEC 418 (423)
Q Consensus 372 ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~ 418 (423)
++.+++|..=+-+..++..+....|..+...|...++++.++++.+.
T Consensus 7 vla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~ 53 (137)
T 1ccw_A 7 VLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET 53 (137)
T ss_dssp EEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH
T ss_pred EEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc
Confidence 55568887777788888777778899888888888888888887753
No 193
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=21.95 E-value=1.9e+02 Score=25.70 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=38.1
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCcE--EEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCC
Q 014512 303 EYSGAPNEGEVLQYARVVIDCATADPDGRK--RALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPN 380 (423)
Q Consensus 303 D~gG~a~~~~~~~a~~~ll~~~~~~~~~~~--ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~ 380 (423)
-++|..+++........++. +..++..+. +.||.|||-.. -. ..|.++++.. +.||++...|.-
T Consensus 31 ~l~g~I~~~~a~~i~~~L~~-l~~~~~~~~I~l~InSPGG~v~---~~---~~I~~~i~~~-------~~~V~t~~~G~A 96 (203)
T 3qwd_A 31 MLGSQIDDNVANSIVSQLLF-LQAQDSEKDIYLYINSPGGSVT---AG---FAIYDTIQHI-------KPDVQTICIGMA 96 (203)
T ss_dssp EECSCBCHHHHHHHHHHHHH-HHHHCSSSCEEEEEEECCBCHH---HH---HHHHHHHHHS-------SSCEEEEEEEEE
T ss_pred EEcCEECHHHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCCCHH---HH---HHHHHHHHHh-------cCCcEEEEeeee
Confidence 34555555444333343332 122344454 44555998642 12 6777877765 478887766655
Q ss_pred HHHHHHHH
Q 014512 381 YQRGLAKM 388 (423)
Q Consensus 381 ~~~a~~~l 388 (423)
+..|-=++
T Consensus 97 aSag~~i~ 104 (203)
T 3qwd_A 97 ASMGSFLL 104 (203)
T ss_dssp ETHHHHHH
T ss_pred hhHHHHHH
Confidence 55454344
No 194
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=21.91 E-value=1.6e+02 Score=28.76 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=33.3
Q ss_pred CCCcEEEEEe-cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 328 PDGRKRALVI-GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 328 ~~~~~ilv~~-~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
+++--.++-| |..+.+.++..+.++.+++.++...+.. -..| ||+-|..+...++.-. +.|||+-
T Consensus 280 ~~~g~~~iaIdP~~f~~~~~f~~~~~~~~~~l~~~~~~~--g~~~--v~~PGe~e~~~~~~~~----~~GI~l~ 345 (365)
T 3i0p_A 280 FSLGHFFIAINVECFRDLNEFKKNVGDINRTLRNTDKLP--GHDR--IYTAGEKEYETEQKRR----KFGDDLP 345 (365)
T ss_dssp CCEEEEEEEEEGGGTSCHHHHHHHHHHHHHHHHTSCCCT--TCCC--CCCTTHHHHHHHHHHH----HHCEEEE
T ss_pred CcceEEEEEEChHHcCCHHHHHHHHHHHHHHHhcCCCCC--CCCc--eeCCChHHHHHHHHHH----ccCcccC
Confidence 3444455555 7666654433333366777776643110 0011 5778855444444332 4699985
No 195
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=21.75 E-value=1.5e+02 Score=28.07 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=36.7
Q ss_pred cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEE-------------eCCCCHHHHHHHHHhhhhhcCCcee
Q 014512 338 GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVR-------------RGGPNYQRGLAKMRALAEEIGLPIE 400 (423)
Q Consensus 338 ~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvr-------------l~G~~~~~a~~~l~~~~~~~Gip~~ 400 (423)
|-.+-+-+.+ .-+.+.+++.... ..++++.| ..|...+++.++|++++++.|+|+.
T Consensus 27 PCsie~~e~~----~~~A~~lk~~~~~---~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~ 95 (285)
T 3sz8_A 27 INVLESLDFT----LDVCGEYVAVTRK---LGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVI 95 (285)
T ss_dssp EEECCCHHHH----HHHHHHHHHHHHH---HTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCcCCCHHHH----HHHHHHHHHHHHh---heeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 6666664433 3344455554322 24666665 3355578999999999999999987
No 196
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=21.53 E-value=2.3e+02 Score=22.80 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=37.7
Q ss_pred CCcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCce------eec
Q 014512 329 DGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI------EVY 402 (423)
Q Consensus 329 ~~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~------~~~ 402 (423)
..+.++++ +++++..+-.+. ..++...++... .+.. +++.|.+ ..-+++|. .+|+.- .+|
T Consensus 63 ~~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~--l~l~~~~-~~v~~~l~----~~gl~~~~~~~~~if 128 (143)
T 3llo_A 63 NIHTVILD-FTQVNFMDSVGV--KTLAGIVKEYGD----VGIY--VYLAGCS-AQVVNDLT----SNRFFENPALKELLF 128 (143)
T ss_dssp CCSEEEEE-CTTCCCCCHHHH--HHHHHHHHHHHT----TTCE--EEEESCC-HHHHHHHH----HTTTTSSGGGGGGEE
T ss_pred CceEEEEE-CCCCccccHHHH--HHHHHHHHHHHH----CCCE--EEEEeCC-HHHHHHHH----hCCCeeccCccceEE
Confidence 44544444 566666555442 566665555542 2333 3444554 34567777 556531 122
Q ss_pred CCCCCHHHHHHHH
Q 014512 403 GPEATMTGICKQA 415 (423)
Q Consensus 403 g~~~t~~~av~~~ 415 (423)
.|.++|+..+
T Consensus 129 ---~s~~~Al~~~ 138 (143)
T 3llo_A 129 ---HSIHDAVLGS 138 (143)
T ss_dssp ---SSHHHHHHHT
T ss_pred ---CcHHHHHHHH
Confidence 7988888754
No 197
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.23 E-value=3.5e+02 Score=24.71 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=50.9
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcc
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIAN 343 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~ 343 (423)
.+|++++.-.+... -..+++..+ |-+.....-+.++.+.+.-+++++-+++ . ++++|+. .
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~ai~~-------~ 246 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEA--NIEFDENLVFEGNYSYEQGKALAERLLE----R-GATSAVV-------S 246 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEECSCCSHHHHHHHHHHHHH----T-TCCEEEE-------S
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCCHHHHHHHHHHHhc----c-CCCEEEE-------C
Confidence 67888864432211 234667664 3332211123456677777777777776 3 5677763 1
Q ss_pred hHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCC
Q 014512 344 FTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGP 379 (423)
Q Consensus 344 ~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~ 379 (423)
++.+| .|+++++++.+ .++| -|+...+.
T Consensus 247 ~d~~A---~g~~~al~~~G-----~~vP~disvig~D~~ 277 (332)
T 2o20_A 247 HDTVA---VGLLSAMMDKG-----VKVPEDFEIISGANS 277 (332)
T ss_dssp CHHHH---HHHHHHHHHTT-----CCTTTTCEEEESSCC
T ss_pred ChHHH---HHHHHHHHHcC-----CCCccCEEEEEeCCh
Confidence 35666 89999999875 3444 34445554
No 198
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=21.05 E-value=2.4e+02 Score=21.72 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=32.8
Q ss_pred cCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 014512 338 GGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415 (423)
Q Consensus 338 ~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~ 415 (423)
++++...+-... ..++...+..+. .+..+.++ |.+ ..-+++|+-.+-..-+++| +|.++|+..+
T Consensus 49 ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l~l~--~~~-~~v~~~l~~~gl~~~~~i~-----~~~~~Al~~~ 112 (117)
T 4hyl_A 49 LREVSYMSSAGL--RVLLSLYRHTSN----QQGALVLV--GVS-EEIRDTMEITGFWNFFTAC-----ASMDEALRIL 112 (117)
T ss_dssp EEEEEEECHHHH--HHHHHHHHHHHH----TTCEEEEE--CCC-HHHHHHHHHHTCGGGCEEE-----SCHHHHHHHH
T ss_pred CCCCcEEcHHHH--HHHHHHHHHHHH----cCCEEEEE--eCC-HHHHHHHHHhCccceeeec-----CCHHHHHHHh
Confidence 556655554332 445555554432 23444443 433 4456777722112223444 8999988764
No 199
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.87 E-value=4e+02 Score=23.61 Aligned_cols=117 Identities=11% Similarity=0.045 Sum_probs=63.0
Q ss_pred CcEEEEEcCCcHHH------HHHHHhhccCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhc-cCC-CCcEEEEEecCC
Q 014512 270 GRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEGEVLQYARVVIDCAT-ADP-DGRKRALVIGGG 340 (423)
Q Consensus 270 g~I~~i~nG~G~~~------~~~D~l~~~g~gg~pa-N~lD~gG~a~~~~~~~a~~~ll~~~~-~~~-~~~~ilv~~~gg 340 (423)
++|++++.-.+... -..+++..+ |-+.. .++ +-++.+.+.-+++++-++ . ..| ++++|+.
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l---~~~~~~~~~ai~~----- 194 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTA--QLPIETGYI-LRGEGTFEVGRAMTLHLL---DLSPERRPTAIMT----- 194 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGE-EECCSSHHHHHHHHHHHH---TSCTTTSCSEEEE-----
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhE-EeCCCCHHHHHHHHHHHH---hhCCCCCCcEEEE-----
Confidence 67888865433211 134666663 43322 222 235566666666665554 2 356 7888773
Q ss_pred CcchHHHHhhHHHHHHHHHHhhhhhhcccee---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 014512 341 IANFTDVAATFNGIIQALKEKESKLKAARMH---LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417 (423)
Q Consensus 341 i~~~~~vaa~~~gii~a~~~~~~~~~~~~~p---ivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g~~~t~~~av~~~v~ 417 (423)
.++.+| .|+++++++.+ .++| -|+...+... + +.+ .-.+.+. .-++.+....+++
T Consensus 195 --~~d~~a---~g~~~al~~~G-----~~vP~di~vig~d~~~~--~-~~~-----~p~lttv----~~~~~~~g~~a~~ 252 (287)
T 3bbl_A 195 --LNDTMA---IGAMAAARERG-----LTIGTDLAIIGFDDAPM--V-QYL-----FPPLSSV----RQPIAEAGRKCIE 252 (287)
T ss_dssp --SSHHHH---HHHHHHHHHTT-----CCBTTTBEEEEESCCTT--G-GGS-----SSCCEEE----ECCHHHHHHHHHH
T ss_pred --CCcHHH---HHHHHHHHHcC-----CCCCCCEEEEEECCchH--h-hcc-----CCCCceE----cCCHHHHHHHHHH
Confidence 235666 89999999875 3444 3455666542 1 112 1234332 2466666666666
Q ss_pred HH
Q 014512 418 CI 419 (423)
Q Consensus 418 ~~ 419 (423)
++
T Consensus 253 ~l 254 (287)
T 3bbl_A 253 LL 254 (287)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 200
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=20.82 E-value=2.4e+02 Score=22.53 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=40.9
Q ss_pred CcEEEEEecCCCcchHHHHhhHHHHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCceeecC---CCC
Q 014512 330 GRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYG---PEA 406 (423)
Q Consensus 330 ~~~ilv~~~ggi~~~~~vaa~~~gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip~~~~g---~~~ 406 (423)
.+.++++ ++++...+..+. ..+.+..++... .+..++ +.|.+ ..-+++|+ .+|+.-. +| .+.
T Consensus 52 ~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~l~----~~gl~~~-~~~~~i~~ 116 (135)
T 4dgf_A 52 PKVFILR-MRRVPVIDATGM--HALWEFQESCEK----RGTILL--LSGVS-DRLYGALN----RFGFIEA-LGEERVFD 116 (135)
T ss_dssp CSEEEEE-CTTCSCBCHHHH--HHHHHHHHHHHH----HTCEEE--EESCC-HHHHHHHH----HHTHHHH-HCGGGBCS
T ss_pred CcEEEEE-cCCCCccCHHHH--HHHHHHHHHHHH----CCCEEE--EEcCC-HHHHHHHH----HcCChhh-cCccceeC
Confidence 3444433 566666655443 556665555542 233443 44444 34556666 4554210 00 128
Q ss_pred CHHHHHHHHHHHHHh
Q 014512 407 TMTGICKQAIECISA 421 (423)
Q Consensus 407 t~~~av~~~v~~~~~ 421 (423)
|.++|+..+-+..+.
T Consensus 117 t~~~Al~~~~~~~~~ 131 (135)
T 4dgf_A 117 HIDKALAYAKLLVET 131 (135)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999988766543
No 201
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=20.75 E-value=2.4e+02 Score=24.19 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=66.2
Q ss_pred cHHHHHHHHhhccCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEe---cCCCcchHHHHhhHHHH
Q 014512 280 GASVIYADTVGDLGYASELGN--YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVI---GGGIANFTDVAATFNGI 354 (423)
Q Consensus 280 G~~~~~~D~l~~~g~gg~paN--~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~---~ggi~~~~~vaa~~~gi 354 (423)
.+---+.|.|..+ |.+..| -+++.|.-. +--+++.+.+ ..+.|+++..- =|+...++-|+ +.+
T Consensus 28 ~Ll~gA~~~l~~~--Gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VIrG~T~Hfd~Va---~~v 95 (157)
T 2obx_A 28 QCVSAFEAEMADI--GGDRFAVDVFDVPGAYE---IPLHARTLAE----TGRYGAVLGTAFVVNGGIYRHEFVA---SAV 95 (157)
T ss_dssp HHHHHHHHHHHHH--HTTSEEEEEEEESSGGG---HHHHHHHHHH----HTCCSEEEEEEECCCCSSBCCHHHH---HHH
T ss_pred HHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeccccCCCcHHHHHH---HHH
Confidence 3445577888885 444433 234444333 5556666665 45689888774 38888887777 666
Q ss_pred HHHHHHhhhhhhccceeEEEE-eCCCCHHHHHHH--HHhhhhhcCCceeecCCCCCHHHHHHHHHHHHH
Q 014512 355 IQALKEKESKLKAARMHLYVR-RGGPNYQRGLAK--MRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420 (423)
Q Consensus 355 i~a~~~~~~~~~~~~~pivvr-l~G~~~~~a~~~--l~~~~~~~Gip~~~~g~~~t~~~av~~~v~~~~ 420 (423)
.+.+-+..-. .++||.-. +.-.+.+++.+- +.. ...| +-=.||+..++++++
T Consensus 96 s~Gl~~v~L~---~~vPV~~GVLT~~~~eqa~eR~~~~~--~~~~---------nKG~eaA~aalem~~ 150 (157)
T 2obx_A 96 IDGMMNVQLS---TGVPVLSAVLTPHNYHDSAEHHRFFF--EHFT---------VKGKEAARACVEILA 150 (157)
T ss_dssp HHHHHHHHHH---HCCCEEEEEECBSCCCSCHHHHHHHH--HHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhhhhc--chhc---------chHHHHHHHHHHHHH
Confidence 6666655422 46997776 555554433221 110 0001 112588888888875
No 202
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.54 E-value=3.5e+02 Score=24.92 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=52.8
Q ss_pred EcCCcHHHHHHHHhhccC---CCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHH
Q 014512 276 VAGGGASVIYADTVGDLG---YASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFN 352 (423)
Q Consensus 276 ~nG~G~~~~~~D~l~~~g---~gg~paN~lD~gG~a~~~~~~~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~ 352 (423)
++--..+-++++.|...| ..|...+.+=++|...........+-..+.+...+... +.....+... .+... +
T Consensus 120 ~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~-~~~~~~~~~~-~~~~~---~ 194 (350)
T 3h75_A 120 GDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVH-LRQLVYGEWN-RERAY---R 194 (350)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEE-EEEEEECTTC-HHHHH---H
T ss_pred CChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeE-EEEEeeCCCc-HHHHH---H
Confidence 333445566777777752 01334567777776543322222222222222244322 2222233322 22222 3
Q ss_pred HHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhhcCCc----eeecCCCCCHH
Q 014512 353 GIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLP----IEVYGPEATMT 409 (423)
Q Consensus 353 gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~~Gip----~~~~g~~~t~~ 409 (423)
.+-+.++... +.-.+++.....+..+.+.|+ ++|+. +.+.|.+.++.
T Consensus 195 ~~~~~L~~~~------~~~aI~~~~d~~a~g~~~al~----~~G~~vP~di~vvg~d~~~~ 245 (350)
T 3h75_A 195 QAQQLLKRYP------KTQLVWSANDEMALGAMQAAR----ELGRKPGTDLLFSGVNSSPE 245 (350)
T ss_dssp HHHHHHHHCT------TEEEEEESSHHHHHHHHHHHH----HTTCCBTTTBEEEEESCCHH
T ss_pred HHHHHHHhCC------CcCEEEECChHHHHHHHHHHH----HcCCCCCCCeEEEecCCCHH
Confidence 3333343331 233555555444455566666 56653 55555555543
No 203
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.26 E-value=4.6e+02 Score=23.32 Aligned_cols=114 Identities=9% Similarity=-0.037 Sum_probs=53.8
Q ss_pred EcCCcHHHHHHHHhhccCCCCCCCceeeccCCCCHHHHH---HHHHHHHhhhccCCCCcEEEEEecCCCcchHHHHhhHH
Q 014512 276 VAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVL---QYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFN 352 (423)
Q Consensus 276 ~nG~G~~~~~~D~l~~~g~gg~paN~lD~gG~a~~~~~~---~a~~~ll~~~~~~~~~~~ilv~~~ggi~~~~~vaa~~~ 352 (423)
+|--..+-++.+.|... |+...+..=++|........ +.++-.++ +.+++.+.+. ++ .. .+-+. +
T Consensus 110 ~D~~~~g~~a~~~l~~~--g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~----~~g~~~~~~~--~~-~~-~~~~~--~ 177 (297)
T 3rot_A 110 SDNLLAGKKLGEKALEL--TPSAKRALVLNPQPGHIGLEKRAYGIKTILQ----DKGIFFEELD--VG-TD-PNQVQ--S 177 (297)
T ss_dssp CCHHHHHHHHHHHHHHH--CTTCCEEEEEESCTTCHHHHHHHHHHHHHHH----HTTCEEEEEE--CC-SC-HHHHH--H
T ss_pred cChHHHHHHHHHHHHHh--cCCCceEEEEeCCCCcHHHHHHHHHHHHHHH----hcCCeEEEee--cC-CC-hHHHH--H
Confidence 44445566777888775 55556676677765532222 33333333 2355543332 22 12 22221 2
Q ss_pred HHHHHHHHhhhhhhccceeEEEEeCCCCHHHHHHHHHhhhhh---cCCceeecCCCCCHH
Q 014512 353 GIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEE---IGLPIEVYGPEATMT 409 (423)
Q Consensus 353 gii~a~~~~~~~~~~~~~pivvrl~G~~~~~a~~~l~~~~~~---~Gip~~~~g~~~t~~ 409 (423)
.+-+.++.+. +.-.+++.....+.-+.+.|++.+.. .. +.++|.+.++.
T Consensus 178 ~~~~~l~~~~------~~~ai~~~~d~~A~g~~~al~~~g~~vP~~d--v~vig~D~~~~ 229 (297)
T 3rot_A 178 RVKSYFKIHP------ETNIIFCLTSQALDPLGQMLLHPDRYDFNYQ--PQVYSFDKTPN 229 (297)
T ss_dssp HHHHHHHHCT------TCCEEEESSHHHHHHHHHHHHSHHHHTCCCC--CEEEEECCCHH
T ss_pred HHHHHHHhCC------CCCEEEEcCCcchHHHHHHHHhcCCccCCCc--eEEEEeCCCHH
Confidence 2222233321 23366666655555566677643332 13 34455455554
No 204
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=20.25 E-value=1e+02 Score=23.43 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHchhCCCCCccCCCceEEecC
Q 014512 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIES 37 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~vp~~~~~~~~~ 37 (423)
|++.|.++||++| ++.-...+....++
T Consensus 15 Ls~eEk~~lL~~y-----~i~~~qLPrI~~~D 41 (78)
T 1hmj_A 15 VPKEEVEEILKRY-----NIKIQQLPKIYEDD 41 (78)
T ss_pred CCHHHHHHHHHHc-----CCCHHHCCeeeCcC
Confidence 7889999999999 87643333334433
Done!