RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014512
(423 letters)
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase.
Length = 423
Score = 885 bits (2288), Expect = 0.0
Identities = 369/423 (87%), Positives = 400/423 (94%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
MARKKIREYDSKRLLKEH +RL+G +LPI+SAQV EST+F+ELA KEPWL+S KLVVKPD
Sbjct: 1 MARKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHNEEFYLN 120
MLFGKRGKSGLVALNLDLAQ ATFVKE LGKE+EM CKGPITTFI+EPF+PH++EFYL+
Sbjct: 61 MLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLS 120
Query: 121 IVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRGEIQE 180
IVS+RLGCS+SFSECGGIEIEENWDKVKTIF+PT A L SE APL+ATLPLEIRG+I+E
Sbjct: 121 IVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPLTSEICAPLIATLPLEIRGKIEE 180
Query: 181 FIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
FIK VF +FQDLDFTFLEMNPFTLVD +PYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG
Sbjct: 181 FIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R MS TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
Query: 301 YAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKE 360
YAEYSGAPNE EVLQYARVVIDCATA+PDGRKRAL+IGGGIANFTDVAATFNGII+AL+E
Sbjct: 301 YAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALRE 360
Query: 361 KESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
KESKLKAARMH++VRRGGPNYQ+GLAKMRAL EEIG+PIEVYGPEATMTGICKQAI+ I+
Sbjct: 361 KESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDYIT 420
Query: 421 AAA 423
AAA
Sbjct: 421 AAA 423
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 163 bits (415), Expect = 3e-46
Identities = 106/428 (24%), Positives = 164/428 (38%), Gaps = 62/428 (14%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTN-FDELAQKEPWLTSCKLVVKPDMLF 63
+ EY +K L ++ +P+ V S +E A++ +VVK +
Sbjct: 2 NLHEYQAKELFAKY-------GIPVPPGYVATSPEEAEEAAKELGG---GPVVVKAQVHA 51
Query: 64 GKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPH-NEEFYLNIV 122
G RGK+G V L +A +E LGK + P+ ++E + +E+YL+IV
Sbjct: 52 GGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIV 111
Query: 123 SERLGCSVSF--SECGGIEIEE----NWDKVKTIFVP--TG--ACLASETSAPLVATLPL 172
+R S GG++IEE +K+ + V TG A E L
Sbjct: 112 LDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQARE--LAFKLGLEG 169
Query: 173 EIRGEIQEFIKSVFTLFQDLDFTFLEMNPF--TLVDRKPYPLDMRGELDDTAAFKNFKKW 230
E+ ++ + IK ++ LF + D T +E+NP T LD + LDD A
Sbjct: 170 ELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNA-------- 221
Query: 231 GNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVG 290
F P + E + L + L+ G I +V G G ++ D V
Sbjct: 222 ---LFRHPDLAELRDESEEDPREAEASGYGLNYVELD--GNIGCIVNGAGLAMATMDIVK 276
Query: 291 DLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALV-IGGGIANFTDVAA 349
G + N+ + G V + +DP+ K V I GGI T
Sbjct: 277 LYG--GKPANFLDVGGGATAERV----KEAFKLILSDPN-VKAIFVNIFGGI---TRCDE 326
Query: 350 TFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMT 409
GII ALKE + L VR G N + G + E GL I +
Sbjct: 327 VAEGIIAALKEVGVNVP-----LVVRLEGTNVEEGKRILA----ESGLNIIAAD---DLD 374
Query: 410 GICKQAIE 417
++A+E
Sbjct: 375 EAAEKAVE 382
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This
model is designated subfamily because it does not
discriminate the ADP-forming enzyme ((EC 6.2.1.5) from
the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half
is described by the CoA-ligases model (pfam00549). The
C-terminal half is described by the ATP-grasp model
(pfam02222). This family contains a split seen both in a
maximum parsimony tree (which ignores gaps) and in the
gap pattern near position 85 of the seed alignment.
Eukaryotic and most bacterial sequences are longer and
contain a region similar to TXQTXXXG. Sequences from
Deinococcus radiodurans, Mycobacterium tuberculosis,
Streptomyces coelicolor, and the Archaea are 6 amino
acids shorter in that region and contain a motif
resembling [KR]G [Energy metabolism, TCA cycle].
Length = 386
Score = 94.8 bits (236), Expect = 2e-21
Identities = 98/433 (22%), Positives = 173/433 (39%), Gaps = 71/433 (16%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIEST-NFDELAQKEPWLTSCKLVVKPDMLF 63
+ EY +K++ ++ +P+ V S +E+A K +VVK +
Sbjct: 2 NLHEYQAKQIFAKY-------GIPVPRGYVATSVEEAEEIAAKLGA---GPVVVKAQVHA 51
Query: 64 GKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG---PITTFIIEPFIPHNEEFYLN 120
G RGK+G V + +A ++ LGKE+ ++ P+ +IE ++E+YL+
Sbjct: 52 GGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLS 111
Query: 121 IVSERLGCSVSF--SECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPLEIRG-- 176
IV +R S GG++IEE + + + PL LP + R
Sbjct: 112 IVIDRSARCPVIMASTEGGVDIEE-------VAEKSPEKIIKYAIDPLTGLLPYQAREIA 164
Query: 177 --------EIQEF---IKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAF 224
+++ IK ++ +F + D + +E+NP + D LD + +DD A F
Sbjct: 165 KKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALF 224
Query: 225 KNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVI 284
++ P M D E + + G I MV G G ++
Sbjct: 225 RH-----------PDLEEMRDYSQ--EDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMA 271
Query: 285 YADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANF 344
D + G E N+ + G + V + ++V+ +D + + I GGI
Sbjct: 272 TMDIIKLYG--GEPANFLDVGGGASAERVREALKLVL----SDKSVKVVFINIFGGITRC 325
Query: 345 TDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGP 404
VA G+++ALKE + + VR G N + G + + E GL I
Sbjct: 326 DLVA---KGLVEALKEVGVNVP-----VVVRLEGTNVEEG----KKILAESGLNII---F 370
Query: 405 EATMTGICKQAIE 417
+M ++A+E
Sbjct: 371 ATSMEEAAEKAVE 383
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional.
Length = 388
Score = 63.2 bits (155), Expect = 7e-11
Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 25/235 (10%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY +K L ++ G +P+ V + A +E L VVK + G
Sbjct: 2 NLHEYQAKELFAKY-----G--VPVPRGIVATTPEEAVEAAEE--LGGGVWVVKAQVHAG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEMEMSEC--KG-PITTFIIEPFIPHNEEFYLNI 121
RGK+G V L +A F K+ LG + + KG P+ ++E +E+YL+I
Sbjct: 53 GRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSI 112
Query: 122 VSERLGCSVSF--SECGGIEIEE----NWDKVKTIFVP--TGACLASETSAPLVATLPLE 173
V +R V F S GG++IEE +K+ + + TG LP E
Sbjct: 113 VLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLTGLQPFQAREIAFKLGLPGE 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV---DRKPYPLDMRGELDDTAAFK 225
+ + + ++ F + D + +E+NP LV D LD + DD A F+
Sbjct: 173 QVKQFAKILMGLYKAFVEKDASLVEINP--LVVTKDGDLIALDAKINFDDNALFR 225
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain.
Length = 202
Score = 58.8 bits (143), Expect = 4e-10
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 20/209 (9%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY +K LL ++ +P+ +V S E A K+ L VVK +L G
Sbjct: 1 NLHEYQAKELLAKY-------GVPVPRGEVAFSPEEAEEAAKK--LGGKVWVVKAQVLAG 51
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG---PITTFIIEPFIPHNEEFYLNI 121
RGK+G V L +A KE LGK + + P+ ++E + E+YL+I
Sbjct: 52 GRGKAGGVKLAKSPEEAKEAAKEMLGKNLVTKQTGPEGKPVNKVLVEEAVDIAREYYLSI 111
Query: 122 VSERL--GCSVSFSECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLV--ATLPLE 173
V +R G + S GG++IEE N + + + + L + + L E
Sbjct: 112 VLDRASRGPVLIASTEGGVDIEEVAAKNPEAIHKVPIDPATGLTPYQAREIAFKLGLEGE 171
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPF 202
+ + + IK ++ LF + D T +E+NP
Sbjct: 172 LVKQAADIIKKLYKLFVERDATLVEINPL 200
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional.
Length = 392
Score = 57.8 bits (140), Expect = 4e-09
Identities = 103/413 (24%), Positives = 163/413 (39%), Gaps = 66/413 (15%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGK 65
I EY +K LL + + + S ++ + L VVK + G
Sbjct: 3 IHEYQAKELLASF-------GVAVPRGALAYSP--EQAVYRARELGGWHWVVKAQIHSGA 53
Query: 66 RGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGP----ITTFIIEPFIPHNEEFYLNI 121
RGK+G + L + ++ LGK++ ++ GP + +E P E YL
Sbjct: 54 RGKAGGIKLCRTYNEVRDAAEDLLGKKL-VTHQTGPEGKPVQRVYVETADPIERELYLGF 112
Query: 122 V----SERLGCSVSFSECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLVATLPLE 173
V SER+ V S GG+EIEE + + + V L + + L L+
Sbjct: 113 VLDRKSERV--RVIASARGGMEIEEIAAKEPEAIIQVVVEPAVGLQQFQAREIAFGLGLD 170
Query: 174 IR--GEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFKNFKKW 230
I+ + I + F+DLD T LE+NP + D + LD + DD A F+
Sbjct: 171 IKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRR---- 226
Query: 231 GNIEFPLPFGRAMSATESFIHDLDEKTSAS---LKFTVLNPKGRIWTMVAGGGASVIYAD 287
++ + + A+ L + L+ G I +V G G ++ D
Sbjct: 227 ----------PNIAEMRDPSQEDPREAQAAEHGLSYVGLD--GDIGCIVNGAGLAMATMD 274
Query: 288 TVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALV-IGGGIANFTD 346
+ G E N+ + G + V + R+V+ +D K LV I GI N D
Sbjct: 275 MIKLAG--GEPANFLDVGGGASPERVAKAFRLVL----SDR-NVKAILVNIFAGI-NRCD 326
Query: 347 VAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
A G++QA +E + L VR G N + G R + E GLPI
Sbjct: 327 WVA--EGVVQAAREVGIDVP-----LVVRLAGTNVEEG----RKILAESGLPI 368
>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta;
Provisional.
Length = 422
Score = 40.9 bits (96), Expect = 9e-04
Identities = 100/408 (24%), Positives = 175/408 (42%), Gaps = 74/408 (18%)
Query: 6 IREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQ--KEPWLTSCKLVVKPDMLF 63
I EY L+ ++ G +P +A +++ DE+ + ++ + ++VVK +L
Sbjct: 30 IHEYQGAELMSKY-----GVNVPKGAA----ASSLDEVKKALEKMFPDEGEVVVKSQILA 80
Query: 64 GKRG----KSGL---VALNLDLAQAATFVKECLGKEMEMSECKGPI-----TTFIIEPFI 111
G RG K+GL V + + +A + LG+ + +++ GP ++ E
Sbjct: 81 GGRGLGTFKNGLKGGVHI-VKKDKAEELAGKMLGQIL-VTKQTGPAGKPVNKVYLCEKMS 138
Query: 112 PHNEEFYLNIVSER-------LGCSVSFSECGGIEIEE----NWDKVKTIFVPTGACLAS 160
NE Y I+ +R + CS GG IE+ +K+ + + +
Sbjct: 139 LVNE-MYFAILLDRASAGPLIIACSK-----GGTSIEDLAEKFPEKIIKVPIDIFKGITD 192
Query: 161 ETSAPLVATLPLEI--RGEIQEFIKSVFTLFQDLDFTFLEMNPFT-LVDRKPYPLDMRGE 217
E +A +V L ++ R + E +K ++ LF D T +E+NP D + D +
Sbjct: 193 EDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLN 252
Query: 218 LDDTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVA 277
DD AAF+ + + F ++ E D E +A + G I MV
Sbjct: 253 FDDNAAFR--------QKEI-FALRDTSQE----DPREVAAAKADLNYIGLDGEIGCMVN 299
Query: 278 GGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALV- 336
G G ++ D + G + N+ + G +E +V++ +++ T+D D K LV
Sbjct: 300 GAGLAMATMDIIKLHGGSP--ANFLDVGGNASEQQVVEAFKIL----TSD-DKVKAILVN 352
Query: 337 IGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384
I GGI DV A+ GI+ A K+ K+ L VR G N +G
Sbjct: 353 IFGGIMK-CDVIAS--GIVNAAKQVGLKVP-----LVVRLEGTNVDQG 392
>gnl|CDD|218748 pfam05787, DUF839, Bacterial protein of unknown function (DUF839).
This family consists of several bacterial proteins of
unknown function that contain a predicted beta-propeller
repeats.
Length = 515
Score = 31.8 bits (72), Expect = 0.76
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDC---- 323
P GR+W G G+++ A GN + P GEV +
Sbjct: 438 PAGRLWICTDGNGSTLGVTPEGNVYNLARNDGNNGMLTEGPIRGEVKLFLTGPEGSEFTG 497
Query: 324 ATADPDGR 331
T PDGR
Sbjct: 498 PTFSPDGR 505
>gnl|CDD|130895 TIGR01836, PHA_synth_III_C, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaC subunit. This model represents the PhaC
subunit of a heterodimeric form of polyhydroxyalkanoic
acid (PHA) synthase. Excepting the PhaC of Bacillus
megaterium (which needs PhaR), all members require PhaE
(TIGR01834) for activity and are designated class III.
This enzyme builds ester polymers for carbon and energy
storage that accumulate in inclusions, and both this
enzyme and the depolymerase associate with the
inclusions. Class III enzymes polymerize
short-chain-length hydroxyalkanoates [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 350
Score = 30.5 bits (69), Expect = 1.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 192 LDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFK---KW 230
L+ TFL + PF+L +K Y +++ L+D +NF KW
Sbjct: 204 LNLTFLMLKPFSLGYQK-Y-VNLVDILEDERKVENFLRMEKW 243
>gnl|CDD|235929 PRK07080, PRK07080, hypothetical protein; Validated.
Length = 317
Score = 30.4 bits (69), Expect = 1.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 364 KLKAARMHLYVRRGGPNY-----QRGLAKMRALAEEIGLPIEV 401
+++ RM YVR G P Q + + A+A+ +GLP+E+
Sbjct: 172 RMQLFRMREYVRIGTPEQIVAFRQSWIERGTAMADALGLPVEI 214
>gnl|CDD|163655 cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and
related proteins, N-terminal metallophosphatase domain.
YhcR is a Bacillus subtilis sugar-nonspecific
endonuclease. It cleaves endonucleolytically to yield
nucleotide 3'-monophosphate products, similar to
Staphylococcus aureus micrococcal nuclease. YhcR appears
to be located in the cell wall, and is thought to be a
substrate for a Bacillus subtilis sortase. YhcR is the
major calcium-activated nuclease of B. subtilis. The
N-terminal metallophosphatase domain belongs to a large
superfamily of distantly related metallophosphatases
(MPPs) that includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 288
Score = 29.6 bits (67), Expect = 3.2
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 335 LVIGGGIAN--FTDVAATFNGIIQALKEKESKLKAARMH 371
LV G+A FTD N + LK H
Sbjct: 162 LVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAH 200
>gnl|CDD|226217 COG3693, XynA, Beta-1,4-xylanase [Carbohydrate transport and
metabolism].
Length = 345
Score = 28.9 bits (65), Expect = 5.4
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 326 ADPDGRKRALVIGG-GIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRG 384
ADPD + LVI I +I+ LKEK + + + + GP+ ++
Sbjct: 183 ADPDAK---LVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKM 239
Query: 385 LAKMRALAEEIGLPIEV-------YGPEAT 407
A + ++ GLPI V Y P++
Sbjct: 240 RAALLKFSKL-GLPIYVTELDMSDYTPDSG 268
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 28.9 bits (65), Expect = 5.7
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 310 EGEVLQYARVVIDCATADPDGR--KRALVIGGG-IANFTDVAATFNGI 354
G + R VID KR +V+GGG I ++AA +
Sbjct: 119 PGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIG--LELAAALAKL 164
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 29.0 bits (65), Expect = 5.8
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 332 KRALVIGGGIANFT---DVAATFNGIIQALKEKESKLKAARMHLY 373
K LVIGGG+A T ++A G L EKE + L
Sbjct: 125 KSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMAKLN 167
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 28.4 bits (64), Expect = 8.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 263 FTVLNPKGRIWTMVAGGGASVIYADTVG 290
F L+P R + G G V+ DTVG
Sbjct: 224 FATLDPTTRR--IELGDGRKVLLTDTVG 249
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 28.1 bits (63), Expect = 9.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 357 ALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
L + + +K+A+ L V GG Y +RA AE G+P+
Sbjct: 218 ELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPV 260
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,945,501
Number of extensions: 2185707
Number of successful extensions: 2296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2277
Number of HSP's successfully gapped: 29
Length of query: 423
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 323
Effective length of database: 6,502,202
Effective search space: 2100211246
Effective search space used: 2100211246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)