RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014512
(423 letters)
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 603 bits (1556), Expect = 0.0
Identities = 181/426 (42%), Positives = 252/426 (59%), Gaps = 3/426 (0%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL + S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPH--NEEFY 118
L +RGK GLV +NL L +++K LG+E + + G + F+IEPF+PH EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASET-SAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI +F ++DL FT+LE+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQA 357
L NY EYSGAP+E + YA+ ++ T + + L+IGG IANFT+VAATF GI++A
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
Query: 358 LKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417
+++ + LK + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A+
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG 420
Query: 418 CISAAA 423
Sbjct: 421 HRPIPN 426
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 488 bits (1259), Expect = e-172
Identities = 181/419 (43%), Positives = 253/419 (60%), Gaps = 3/419 (0%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL + S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFIPHN--EEFY 118
L +RGK GLV +NL L +++K LG+E + + G + F+IEPF+PH+ EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASET-SAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI +F ++DL FT+LE+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQA 357
L NY EYSGAP+E + YA+ ++ T + + L+IGG IANFT+VAATF GI++A
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA 360
Query: 358 LKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 416
+++ + LK + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A+
Sbjct: 361 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 69.1 bits (170), Expect = 5e-13
Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 28/232 (12%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY +K +L + +P+ +V + +E + ++V+K + G
Sbjct: 2 NLHEYQAKEILARY-------GVPVPPGKVAYTP--EEAKRIAEEFGK-RVVIKAQVHVG 51
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKG-PITTFIIEPFIPHNEEFYLNIVS 123
RGK+G V L +A + LG + KG + ++ + +E+Y ++
Sbjct: 52 GRGKAGGVKLADTPQEAYEKAQAILGMNI-----KGLTVKKVLVAEAVDIAKEYYAGLIL 106
Query: 124 ERLGCSVSF--SECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLVATLPLEIRGE 177
+R V S+ GG++IEE + + ++ + +V LE G
Sbjct: 107 DRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLE--GN 164
Query: 178 IQEF---IKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFK 225
+ + + +++ ++ +D + E+NP + D D + LDD A F+
Sbjct: 165 LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFR 216
Score = 28.2 bits (64), Expect = 5.1
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 337 IGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIG 396
I GGI +VA G+I+AL+E + +R G + + L E
Sbjct: 309 IFGGITRADEVA---KGVIRALEEGLLTKP-----VVMRVAGTAEEEA----KKLLEGKP 356
Query: 397 LPIEVYGPEATMTGICKQAIECISAAA 423
+ + T K + AA
Sbjct: 357 VYM-----YPTSIEAAKVTVAMKGGAA 378
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 68.6 bits (169), Expect = 6e-13
Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 21/232 (9%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY +K+L + LP + E + + + VVK + G
Sbjct: 2 NLHEYQAKQLFARY-------GLPAPVGYACTTP--REAEEAASKIGAGPWVVKCQVHAG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEM--EMSECKG-PITTFIIEPFIPHNEEFYLNI 121
RGK+G V + F + LGK + ++ G P+ ++E +E YL
Sbjct: 53 GRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112
Query: 122 VSERLGCSVSF--SECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLVATLPL--E 173
V +R V F S GG+EIE+ + + + L L L +
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAF 224
+ + + + T+F + D +E+NP + LD + D A F
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALF 224
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 64.4 bits (158), Expect = 2e-11
Identities = 50/240 (20%), Positives = 102/240 (42%), Gaps = 28/240 (11%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
++EY SK+L+ ++ + ++ V ++ +E + L + ++V+K +L G
Sbjct: 2 NLQEYQSKKLMSDN-------GVKVQRFFVADTA--NEALEAAKRLNAKEIVLKAQILAG 52
Query: 65 KRGK-------SGLVALNLDLAQAATFVKECLGKEM--EMSECKG-PITTFIIEPFIPHN 114
RGK G V L D K+ +G + + + +G + ++ + +
Sbjct: 53 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 112
Query: 115 EEFYLNIVSERLGCSVSF--SECGGIEIEE----NWDKVKTIFVPTGACLASETSAPLVA 168
E YL I+ +R S GG++IEE N + + + + + +
Sbjct: 113 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 172
Query: 169 TLPL--EIRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFK 225
L ++ + + IK ++ LF +D T +E+NPF + + D + DD A F+
Sbjct: 173 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 6e-07
Identities = 56/291 (19%), Positives = 89/291 (30%), Gaps = 101/291 (34%)
Query: 144 WDKVKTIFVPT-GACLASETSAPLVATLPLEI-------RG-EIQE-FIKSVFTLFQDLD 193
W++ F T G + +V P+ + +G I+E + +F D
Sbjct: 1646 WNRADNHFKDTYGFSILD-----IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 194 FTFLEMNPFTLVDRKPYPLDMRG---ELDDT------------AAFKNFKKWGNI----- 233
++ F ++ R L T AAF++ K G I
Sbjct: 1701 LKTEKI--FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 234 -------EFP--------LPF----------GRAM-SATESFIHDLDEKTSASLKFTVLN 267
E+ + G M A DE ++ +N
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR-----DELGRSNYGMIAIN 1813
Query: 268 PKGRIWTMVAGGGASVI--YADTVG-DLGYASELGNYAEYSGAPN-EGEVLQYARVVIDC 323
P GR + A + + VG G+ E+ NY N E + QY
Sbjct: 1814 P-GR---VAASFSQEALQYVVERVGKRTGWLVEIVNY-------NVENQ--QYV-----A 1855
Query: 324 ATADPDGRKRALVIGGGIANFTDVAATFNGI-IQALKEKESKLKAARMHLY 373
A G RAL + NF + I I L++ S L+ HL+
Sbjct: 1856 A-----GDLRALDTVTNVLNFIKL----QKIDIIELQKSLS-LEEVEGHLF 1896
Score = 42.3 bits (99), Expect = 3e-04
Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 123/275 (44%)
Query: 183 KSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGR- 241
K+ ++ D F + F+++D N I F G+
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILD----------------IVINNPVNLTIHFGGEKGKR 1683
Query: 242 ------AM---------SATESFIHDLDEKTSASLKFTVLNPKGRI----WT---MVAGG 279
AM TE +++E ++ S F + KG + +T +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHST-SYTFR--SEKGLLSATQFTQPALTL-- 1738
Query: 280 GASV-IYAD------TVGDLGYA--SELGNYAEYSGAPNEGEVLQYARVVIDCATADPDG 330
+ D D +A S LG EY+
Sbjct: 1739 -MEKAAFEDLKSKGLIPADATFAGHS-LG---EYA------------------------- 1768
Query: 331 RKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRA 390
AL + + + ++ V RG+ A
Sbjct: 1769 ---ALASLADVMSIESLV---------------EV--------VF------YRGMTMQVA 1796
Query: 391 LAE-EIGLPIEVYG-----PEATMTGICKQAIECI 419
+ E+G YG P ++A++ +
Sbjct: 1797 VPRDELG--RSNYGMIAINPGRVAASFSQEALQYV 1829
Score = 40.8 bits (95), Expect = 0.001
Identities = 54/340 (15%), Positives = 96/340 (28%), Gaps = 113/340 (33%)
Query: 15 LKEHFQRLSGRELPIKSAQVIEST----NFDELAQKEPWLTSCKLVVKPDMLF--GKRGK 68
L+ + + +G + +A I T +F +K + +LF G R
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK---------AIT--VLFFIGVRCY 311
Query: 69 SGLVALNLDLAQAATFVKECLGKEMEMSECKGPITTFIIEPFI-------PHNEEFYLNI 121
+L + ++ G M +T ++ ++ P ++ +++
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 122 VSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAP--LVATLPLEIR---- 175
V N K V +G P L L L +R
Sbjct: 371 V--------------------NGAK---NLVVSGP--------PQSLYG-LNLTLRKAKA 398
Query: 176 --GEIQEFI-----KSVFTLFQDLDFTFLEMN-PF-----------TLVDRKPYPLDMRG 216
G Q I K F+ FL + PF D +
Sbjct: 399 PSGLDQSRIPFSERKLKFSN------RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 217 -ELD----DTAAFKNFKKW-GNI---------EFPLPFGRAMSATESFIHDLDEKTSASL 261
++ DT + + G+I P+ + + I D ++ L
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 262 -KFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
T N G G VI A T+ D+ + G
Sbjct: 513 GVLTHRNKDGT--------GVRVIVAGTL-DINPDDDYGF 543
Score = 30.8 bits (69), Expect = 1.0
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 75/232 (32%)
Query: 15 LKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVAL 74
L+E F + LP E T + A + T +LV K F G V+
Sbjct: 33 LQEQFNK----ILP-------EPT--EGFAADDEPTTPAELVGK----F-----LGYVSS 70
Query: 75 NLDLAQAAT-----------FVKECLG--------------KEMEMSECKGPITTF---- 105
++ ++ F L + + + K I +
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 106 --IIEPFIPHNEEFYLNIVSERLGCSVSFSECGGI-EIEENWDKVKTIFVPTGACLASET 162
PF + V E G + + GG ++ +++++ ++ +T
Sbjct: 131 IMAKRPFDKKSNSALFRAVGE--GNAQLVAIFGGQGNTDDYFEELRDLY---------QT 179
Query: 163 SAPLVATLPLEIRGEIQEFIKSVFT---LFQD-LDF-TFLEMNPFTLVDRKP 209
LV L + E I++ +F L+ +LE NP P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NP----SNTP 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 7e-07
Identities = 46/308 (14%), Positives = 88/308 (28%), Gaps = 75/308 (24%)
Query: 10 DSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRG-- 67
D++ K + RL P + EL + + + G G
Sbjct: 122 DNQVFAKYNVSRLQ----PYLKLR----QALLEL-RPAKNVL----------IDGVLGSG 162
Query: 68 KSGLVA---LNLDLAQAATF------VKECLGKE--MEMSE--CKGPITTFIIEPFIPHN 114
K+ + L+ + F +K C E +EM + + N
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 115 EEFYLNIVSERLG---CSVSFSECGGIEIEEN-WDKVKTI--FVPTGAC--LASETSAPL 166
+ ++ + L S + C + + N + K F +C L + +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNA-KAWNAF--NLSCKILLTTRFKQV 277
Query: 167 VATLPLEIRGEI-QEFIKSVFTLFQDLDF--TFLEMNPFTL----VDRKPYPLDMRGEL- 218
L I + T + +L+ P L + P L + E
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 219 -DDTAAFKNFKKWGNIEFPLPFGRAMSATESFIHDLDEKTSASL--KFTVLNPKG----- 270
D A + N+K + + ES ++ L+ + + +V P
Sbjct: 338 RDGLATWDNWKHVNCDKL-------TTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPT 389
Query: 271 ----RIWT 274
IW
Sbjct: 390 ILLSLIWF 397
Score = 44.8 bits (105), Expect = 5e-05
Identities = 53/393 (13%), Positives = 108/393 (27%), Gaps = 144/393 (36%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELP--------IKSAQVIESTNFDELAQKEPWLTS 52
+ K+R + + L+ + + +++A+ + F+ S
Sbjct: 220 SSNIKLRIHSIQAELRRLLKS---KPYENCLLVLLNVQNAKAWNA--FN---------LS 265
Query: 53 CKLVVK------PDMLFGKRGK--------SGLV---ALNLDLAQAATFVKECLGKEMEM 95
CK+++ D L L +L L + + L +E+
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREV-- 322
Query: 96 SECKG-PITTFIIEPFIPHNE---EFYLNIVSERLGCSVS--------------FSECG- 136
P II I + + ++ ++L + F
Sbjct: 323 --LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 137 ---GIEIEEN-----WDKVKTIFVPT------GACLASETSAPLVATLP---LEIRGEIQ 179
I W V V L + ++P LE++ +++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 180 E----------------------------------FI----KSV-----FTLFQD--LDF 194
I K++ TLF+ LDF
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 195 TFLEMNPFTLVDRK----PYPLDMRGELDDTAA-FKNFKKWGNIEFPLPFGRAMSATESF 249
FLE +K + G + +T K +K + P + R ++A F
Sbjct: 501 RFLE--------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAILDF 551
Query: 250 IHDLDEKTSAS-----LKFTVLNPKGRIWTMVA 277
+ ++E S L+ ++ I+
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 29.4 bits (65), Expect = 3.1
Identities = 35/244 (14%), Positives = 75/244 (30%), Gaps = 68/244 (27%)
Query: 177 EIQEFIKSVFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAF------KNFKKW 230
++Q+ KS+ + +++D + + + R + L + E + F N+ K+
Sbjct: 37 DVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINY-KF 93
Query: 231 GNIEFPL---PFGRAMSATESFIHDLDEKTSASLKFT---V---------------LNPK 269
+ P+ +M T +I D + + F V L P
Sbjct: 94 --LMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 270 GRIWT--MVAGGGASVIYADTVGDLGYASELG------NYAEYSGAPNEGEVLQYARVVI 321
+ + G G + + D ++ N + E+LQ I
Sbjct: 151 KNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 322 DCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381
D N+T + + I + +++L+ L + Y
Sbjct: 210 DP-------------------NWTSRSDHSSNIKLRIHSIQAELR----RLLKSK---PY 243
Query: 382 QRGL 385
+ L
Sbjct: 244 ENCL 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.9 bits (92), Expect = 3e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 17/45 (37%)
Query: 356 QALKEKESKLKAARMHLYVRRGGPNYQRGLAKMRALAEEIGLPIE 400
QALK+ ++ LK LY P ALA I +E
Sbjct: 20 QALKKLQASLK-----LYADDSAP----------ALA--IKATME 47
>3iyl_A Outer capsid VP4; non-enveloped virus, membrane penetration
protein, autocleav myristol group, icosahedral virus;
HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_I
Length = 648
Score = 29.8 bits (66), Expect = 2.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 248 SFIHDLDEKTSA----SLKFTVLNPKGRIWTMVAGGGAS----VIYADTVGDLGYASE 297
SF D ++A LK VLNP G++W V A+ I +D G + +E
Sbjct: 19 SFTPTSDMTSTAAPAIDLKPGVLNPTGKLWRPVGTSVATIDSLAIVSDRFGQYSFVNE 76
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.4 bits (66), Expect = 2.6
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 25/77 (32%)
Query: 322 DCATADPDGRKRALVIGGGIANFTDVA---ATFNGIIQALKEKESKLKAARMHLYVRRGG 378
C + P R +V+G G D A AT AL + A R+ L
Sbjct: 323 ACHSPLPSIRGAVIVLGAG-----DTAFDCAT-----SAL-----RCGARRVFLV----- 362
Query: 379 PNYQRGLAKMRALAEEI 395
+++G +RA+ EE+
Sbjct: 363 --FRKGFVNIRAVPEEV 377
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 28.8 bits (65), Expect = 3.4
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 23/82 (28%)
Query: 278 GGGASVIYADTVGDLGYASELG------NYAEY--SGAPNEGEVLQYARVVID------- 322
G G++ I+ G L +ELG + AE S E + L + +
Sbjct: 152 GIGSAFIFD---GKLVPNAELGHLEIDGHDAETKASAVARERDGLSWDEYSVLLQRYFSH 208
Query: 323 -CATADPDGRKRALVIGGGIAN 343
P+ ++GGGI+
Sbjct: 209 VEFLFSPE----LFIVGGGISK 226
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 27.3 bits (61), Expect = 8.6
Identities = 2/36 (5%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 15 LKEHFQRLS---GRELPIKSAQVIESTNFDELAQKE 47
+ ++ A + + + + + E
Sbjct: 188 PEGELWKVVDFLELGGRDGVADAVANCTLERMREME 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,693,515
Number of extensions: 426320
Number of successful extensions: 1390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1369
Number of HSP's successfully gapped: 27
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)