RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014512
(423 letters)
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 68.8 bits (167), Expect = 6e-14
Identities = 41/233 (17%), Positives = 76/233 (32%), Gaps = 21/233 (9%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
+ EY +K+L + LP T E + + + VVK + G
Sbjct: 2 NLHEYQAKQLFARY-------GLPAPVGYAC--TTPREAEEAASKIGAGPWVVKCQVHAG 52
Query: 65 KRGKSGLVALNLDLAQAATFVKECLGKEM----EMSECKGPITTFIIEP-FIPHNEEFYL 119
RGK+G V + F + LGK + + + + I
Sbjct: 53 GRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112
Query: 120 NIVSERLGCSVSFSECGGIEIEENWDKVKTIFV-----PTGACLASETSAPLVA-TLPLE 173
+ S GG+EIE+ ++ + P + + L +
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172
Query: 174 IRGEIQEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFK 225
+ + + + T+F + D +E+NP + LD + D A F+
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 63.7 bits (155), Expect = 8e-13
Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 21/166 (12%)
Query: 252 DLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEG 311
D E +A + + G I MV G G ++ D V G E N+ + G +
Sbjct: 1 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKE 58
Query: 312 EVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMH 371
V + +++ +D + V+ +GII A+ E +
Sbjct: 59 RVTEAFKII----LSDDKVKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP----- 106
Query: 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIE 417
+ VR G N + G + GL I +T +Q +
Sbjct: 107 VVVRLEGNNAELG----AKKLADSGLNII---AAKGLTDAAQQVVA 145
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 65.4 bits (158), Expect = 9e-13
Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 28/240 (11%)
Query: 5 KIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFG 64
++EY SK+L+ ++ + ++ V ++ +E + L + ++V+K +L G
Sbjct: 3 NLQEYQSKKLMSDN-------GVKVQRFFVADTA--NEALEAAKRLNAKEIVLKAQILAG 53
Query: 65 KRGKSGL-------VALNLDLAQAATFVKE-----CLGKEMEMSECKGPITTFIIEPFIP 112
RGK V L D K+ K+ K I
Sbjct: 54 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 113
Query: 113 HNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASETSAPLVATLPL 172
+ + G + S GG++IEE + + +
Sbjct: 114 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 173
Query: 173 EIRGEI------QEFIKSVFTLFQDLDFTFLEMNPFTLV-DRKPYPLDMRGELDDTAAFK 225
+ + IK ++ LF +D T +E+NPF + + D + DD A F+
Sbjct: 174 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 233
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 48.7 bits (116), Expect = 1e-07
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 21/169 (12%)
Query: 252 DLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEG 311
+ E +A + G I V G G ++ D + G + N+ + G E
Sbjct: 1 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNG--GKPANFLDLGGGVKES 58
Query: 312 EVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMH 371
+V Q TADP + I GGI N +A I +A +E E K+
Sbjct: 59 QVYQ----AFKLLTADPKVEAILVNIFGGIVNCAIIANG---ITKACRELELKVP----- 106
Query: 372 LYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
L VR G N + + GLPI + K+A+ ++
Sbjct: 107 LVVRLEGTNVHEA----QNILTNSGLPITSA---VDLEDAAKKAVASVT 148
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 32.4 bits (73), Expect = 0.046
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 34/153 (22%)
Query: 268 PKG-RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE------GEVLQYARVV 320
P+G ++ M GG V+ AD + G A E + V
Sbjct: 1 PRGNKVAIMTNAGGPGVLTADELDKRG-----LKLATLEEKTIEELRSFLPPMAAVKNPV 55
Query: 321 IDCATADPDGRKRAL--------------VIGGGIANFTDVAATFNGIIQALKEKESKLK 366
A+A + R + + GII+A+KE ++
Sbjct: 56 DMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNE-- 113
Query: 367 AARMHLYVRRGGPNYQRGLAKMRALAEEIGLPI 399
+ L + G ++ + L E+ G+P
Sbjct: 114 --KPVLAMFMAGYVSEKA----KELLEKNGIPT 140
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 27.5 bits (61), Expect = 1.5
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 92 EMEMSEC--KGPITTFIIEPFIPHNEEFYLNIVSERLGCSVSFSECGGIEIEENWDKVK 148
++E+ + G I + + L LG V+ SE G + +W +++
Sbjct: 55 KVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQ 113
>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen
regulation fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 92
Score = 26.6 bits (58), Expect = 2.1
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 370 MHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECIS 420
L+ R PN K+ + E+G + + ++
Sbjct: 6 YTLFSHRSAPNGF----KVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVN 52
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 26.7 bits (58), Expect = 3.8
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 322 DCATADPDGRKRALVIGGGIANFTDVAATFNGIIQALKEKESKLKAARMHLYVRRGGPNY 381
C + P R +V+G G F D A + + A R+ L R+G N
Sbjct: 36 ACHSPLPSIRGAVIVLGAGDTAF-DCATSAL-----------RCGARRVFLVFRKGFVNI 83
Query: 382 QRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAIECI 419
+ ++ EE + P + +
Sbjct: 84 RAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQF 121
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236
{Staphylococcus aureus, strain Mu50 / ATCC 700699
[TaxId: 1280]}
Length = 106
Score = 25.6 bits (56), Expect = 5.7
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 2 ARKKIREYDSKRLLKEHFQR 21
+ +Y+ K L + F++
Sbjct: 58 TGDLVEDYEKKLELYQKFEQ 77
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 26.4 bits (57), Expect = 6.3
Identities = 19/158 (12%), Positives = 41/158 (25%), Gaps = 11/158 (6%)
Query: 55 LVVKPDMLFGKRG---KSGLVALNLDLAQAATFVKECLGKEMEMSEC-KGPITTFIIEPF 110
++VKP G +G + ++ K +++ E G
Sbjct: 30 VIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYS 89
Query: 111 IPHNEEFYLNIVSERLGCSVSFSECG-------GIEIEENWDKVKTIFVPTGACLASETS 163
E ++I + ++I I + + +
Sbjct: 90 KVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEA 149
Query: 164 APLVATLPLEIRGEIQEFIKSVFTLFQDLDFTFLEMNP 201
V E+ G + DL+F E++
Sbjct: 150 GERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISA 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,600,958
Number of extensions: 77144
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 15
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)