Your job contains 1 sequence.
>014513
MATAGPQGGGYHQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKI
TGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIF
VGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN
GVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGN
LDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVR
ISWGRKQDVTGSVAAQVDPSQWNAYYGYGQGYDAYAYGAAQDPSLYAYGAYAGYPQYAQQ
AEGVTDMAAVASALPTMEQREELYDPLATPDVDKLNAAYLSIHGNAILGRTLWLKTSSLT
PQT
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014513
(423 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 1302 7.9e-133 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 947 3.3e-95 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 944 6.8e-95 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 913 1.3e-91 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 906 7.3e-91 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 895 1.1e-89 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 894 1.4e-89 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 891 2.8e-89 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 881 3.2e-88 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 854 2.4e-85 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 481 2.0e-71 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 721 2.9e-71 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 658 1.4e-64 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 588 3.6e-57 1
MGI|MGI:1919037 - symbol:Trnau1ap "tRNA selenocysteine 1 ... 469 2.0e-47 2
UNIPROTKB|E2QV44 - symbol:TRNAU1AP "Uncharacterized prote... 464 6.8e-47 2
UNIPROTKB|Q9NX07 - symbol:TRNAU1AP "tRNA selenocysteine 1... 464 6.8e-47 2
UNIPROTKB|I3LHP4 - symbol:TRNAU1AP "Uncharacterized prote... 464 6.8e-47 2
UNIPROTKB|Q1RMJ7 - symbol:TRNAU1AP "tRNA selenocysteine 1... 463 8.6e-47 2
RGD|619995 - symbol:Secp43 "tRNA selenocysteine associate... 462 1.1e-46 2
UNIPROTKB|E1BZH5 - symbol:TRNAU1AP "Uncharacterized prote... 454 7.6e-46 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 255 6.2e-42 3
ZFIN|ZDB-GENE-040426-2386 - symbol:trnau1apl "tRNA seleno... 411 6.6e-41 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 254 2.0e-39 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 408 4.3e-38 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 407 5.5e-38 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 397 6.3e-37 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 396 8.0e-37 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 244 5.9e-35 2
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 376 1.1e-34 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 368 7.4e-34 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 363 2.5e-33 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 354 2.3e-32 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 348 9.8e-32 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 345 2.0e-31 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 342 4.2e-31 1
FB|FBgn0031607 - symbol:CG15440 species:7227 "Drosophila ... 341 5.4e-31 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 340 6.9e-31 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 337 1.4e-30 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 326 2.1e-29 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 326 2.1e-29 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 326 2.1e-29 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 326 2.1e-29 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 323 4.4e-29 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 323 4.4e-29 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 323 4.4e-29 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 323 4.4e-29 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 323 4.4e-29 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 321 7.1e-29 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 320 9.1e-29 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 320 9.1e-29 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 319 1.2e-28 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 318 1.5e-28 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 317 2.3e-28 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 316 2.4e-28 1
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 314 3.9e-28 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 311 8.2e-28 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 292 8.4e-26 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 290 1.4e-25 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 225 5.5e-24 2
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 272 1.1e-22 1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 270 2.0e-22 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 267 7.7e-22 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 267 7.7e-22 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 267 7.7e-22 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 267 7.7e-22 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 267 7.7e-22 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 267 7.7e-22 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 269 1.5e-21 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 262 2.9e-21 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 201 7.5e-21 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 260 3.4e-20 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 260 3.8e-20 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 259 4.7e-20 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 258 6.5e-20 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 256 9.5e-20 2
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 236 1.2e-19 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 249 2.0e-19 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 249 2.0e-19 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 227 2.0e-19 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 213 3.8e-19 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 252 4.0e-19 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 227 4.9e-19 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 251 4.9e-19 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 251 5.4e-19 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 249 6.7e-19 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 210 8.4e-19 2
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 242 1.2e-18 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 193 1.2e-18 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 211 1.3e-18 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 211 1.3e-18 2
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 249 1.5e-18 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 247 1.7e-18 1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 239 2.0e-18 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 247 2.1e-18 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 246 2.2e-18 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 246 2.2e-18 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 245 2.3e-18 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 244 2.5e-18 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 245 2.9e-18 1
WARNING: Descriptions of 946 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 1302 (463.4 bits), Expect = 7.9e-133, P = 7.9e-133
Identities = 261/409 (63%), Positives = 296/409 (72%)
Query: 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAA 78
TLEEVRTLWIGDLQYW DENYL+SCF+ TGE+VS+K+IRNKITGQPEGYGF+EF+SHAAA
Sbjct: 19 TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Query: 79 ERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFR 138
ER LQTYNGT MPGTE FRLNWASFG G+K DAGP+HSIFVGDLAPDVTDYLLQETFR
Sbjct: 79 ERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
Y SVRGAKVVTDP+TGRSKGYGFVKF +E+ERNRAM EMNG++CSTRPMRISAATPKK
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
Query: 199 TTGFQQQYAAVKATYPV---AAYTTPVQVF--PADNDITNTTIFVGNLDPNVTEEELKQT 253
G QQQY KA YPV +A PVQ + P ++D+T TTI V NLD NVTEEELK+
Sbjct: 198 NVGVQQQYVT-KAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKA 256
Query: 254 FLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSV 313
F GE++ VKIP +G G+VQF R SAEEA+ RMQG +IGQQ VRISW + G V
Sbjct: 257 FSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWV 316
Query: 314 AAQVDPSQWNXXXXXXXXXXXXXXXXXXXPSLXXXXXXXXXXXXXXXXXXVTDMAAVASA 373
Q DP+QWN PS+ + A
Sbjct: 317 T-QADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAGG 375
Query: 374 LPTMEQREELYDPLATPDVDKLNAAYLSIHGNAILGRTLWLKTSSLTPQ 422
+ EQ ELYDPLATPDVDKLNAAYLS+H +AILGR +W +TSSLT Q
Sbjct: 376 VAGAEQ--ELYDPLATPDVDKLNAAYLSVHASAILGRPMWQRTSSLTSQ 422
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 188/284 (66%), Positives = 215/284 (75%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
EVR+LWIGDLQYW DENYLS+CF HTGE+VS K+IRNK TGQ EGYGF+EF SHAAAE +
Sbjct: 82 EVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETI 141
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
LQTYNGT MP EQNFR+NWAS G GE+R D+ EH+IFVGDLA DVTDY+LQETF+S Y
Sbjct: 142 LQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA-EHTIFVGDLAADVTDYILQETFKSVY 200
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
SVRGAKVVTD TGRSKGYGFVKF DE+E+ RAMTEMNGV CSTRPMRI A KK G
Sbjct: 201 SSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVG 260
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
Q KATY P Q ++D NTTIFVG LDP V EE L+Q F +GE+V
Sbjct: 261 TPQ-----KATYQ-----NP-QATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV 309
Query: 262 NVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
+VKI G+ CGFVQF RASAE+A+ + G +G Q +R+SWGR
Sbjct: 310 HVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGR 353
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 184/305 (60%), Positives = 230/305 (75%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E+ +T+WIGDLQ W DE+YL SCF+ GEV+S+KIIRNK TGQ E YGFVEF +HAAAE+
Sbjct: 81 EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEK 140
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
VLQ+YNGT MP TEQ FRLNWA F GEKR + G + SIFVGDLA DVTD +L++TF S+
Sbjct: 141 VLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASR 200
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
YPS++GAKVV D NTG SKGYGFV+F DE+ER+RAMTEMNGV+CS+R MRI ATPKK +
Sbjct: 201 YPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS 260
Query: 201 GFQQQYA-AVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
+Q + AV + A+ +D D +NTTIFVG LD VT+EEL+Q+F FGE
Sbjct: 261 AHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGE 320
Query: 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQVDP 319
+V+VKIP G+GCGFVQF+ R+SA+EAI ++ G +IG+Q VR+SWGR + + D
Sbjct: 321 VVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSP---ANKQMRTDS 377
Query: 320 -SQWN 323
SQWN
Sbjct: 378 GSQWN 382
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 171/289 (59%), Positives = 221/289 (76%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
++V+TLW+GDL +W DE YL SCF+HTGEV S+K+IRNK+T Q EGYGFVEF+S AAAE
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRS 139
VLQ Y+G+ MP ++Q FR+NWASF GEKR + GP+ S+FVGDL+PDVTD LL ETF
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
+YPSV+ AKVV D NTGRSKGYGFV+F DENER+RA+TEMNG +CS R MR+ ATPK+
Sbjct: 225 RYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQV---FPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
QQQ+++ +A + + + +D + TN TIFVG +DP+V +E+L+Q F
Sbjct: 285 IANQQQHSS-QAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQ 343
Query: 257 FGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
FGE+V+VKIP+G+GCGFVQFA R SAE+AI + G +IG+ VR+SWGR
Sbjct: 344 FGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 179/303 (59%), Positives = 214/303 (70%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+V++LWIGDLQ W DENY+ S FA +GE S K+IRNK+TGQ EGYGF+EFVSH+ AERV
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
LQTYNG PMP TEQ FRLNWA G GEKR GP+H+IFVGDLAP+VTDY+L +TF++
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
Y SV+GAKVV D TGRSKGYGFV+F DENE+ RAMTEMNG +CSTRPMRI A K
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
Q P A Y DND NTTIFVG LD NVT++ELK F FGE+
Sbjct: 238 PMQ----------P-AMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL 286
Query: 261 VNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQVDPS 320
++VKIP G+ CGFVQ+A +ASAE A+ + G +G Q +R+SWGR + Q D +
Sbjct: 287 LHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPN------KQSDQA 340
Query: 321 QWN 323
QWN
Sbjct: 341 QWN 343
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 182/306 (59%), Positives = 220/306 (71%)
Query: 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAA 78
T +E+RTLWIGDLQYW DEN+L CFAHTGE+VS K+IRNK TGQ EGYGF+EF SHAAA
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 79 ERVLQTYNGTPMPG-TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETF 137
ERVLQT+N P+P +Q FRLNWAS G+KR D+ P+++IFVGDLA DVTDY+L ETF
Sbjct: 117 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETF 175
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
R+ YPSV+GAKVV D TGR+KGYGFV+F DE+E+ RAMTEMNGV CSTRPMRI A K
Sbjct: 176 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Query: 198 K-TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
K TG + Y + A TT DND NTT+FVG LD +VT++ LK F
Sbjct: 236 KGVTGQRDSYQS-----SAAGVTT-------DNDPNNTTVFVGGLDASVTDDHLKNVFSQ 283
Query: 257 FGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQ 316
+GEIV+VKIP G+ CGFVQF+ ++ AEEA+ + G +G VR+SWGR S
Sbjct: 284 YGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSP----SNKQS 339
Query: 317 VDPSQW 322
DPSQ+
Sbjct: 340 GDPSQF 345
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 177/287 (61%), Positives = 215/287 (74%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCF--AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E +T+W+GDLQ W DE YL+S F A E+VS+K+IRNK G EGYGFVEF SH A+
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETFR 138
+VLQ +NG PMP T+Q FRLNWASF GEKR + GP+ SIFVGDLAPDV+D LL ETF
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+YPSV+ AKVV D NTGRSKGYGFV+F DENER +AMTEMNGV CS+R MRI ATP+K
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T G+QQQ + P A+T ++ D NTTIFVG LD +VT+E+LKQ F FG
Sbjct: 281 TNGYQQQGGYM----PSGAFTR------SEGDTINTTIFVGGLDSSVTDEDLKQPFSEFG 330
Query: 259 EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
EIV+VKIP+G+GCGFVQF R +AEEA+ ++ G +IG+Q VR+SWGR
Sbjct: 331 EIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 377
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 172/286 (60%), Positives = 214/286 (74%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
++V+TLW+GDL +W DE YL +CF+HT EV S+K+IRNK T Q EGYGFVEF+S +AAE
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRS 139
LQ+++G MP EQ FRLNWASF GEKR + GP+ SIFVGDLAPDV+D +L ETF
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
+YPSV+GAKVV D NTGRSKGYGFV+F DENER+RAMTEMNG FCS+R MR+ ATPK+
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
+ QQ + T + + +D + N+TIFVG LD +VTEE+L Q F FGE
Sbjct: 296 AAYGQQNGSQALTL-AGGHGGNGSM--SDGESNNSTIFVGGLDADVTEEDLMQPFSDFGE 352
Query: 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
+V+VKIP+G+GCGFVQFA R SAEEAI + G +IG+ VR+SWGR
Sbjct: 353 VVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGR 398
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 175/287 (60%), Positives = 214/287 (74%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGE--VVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E +T+W+GDL +W DE YL+S FA E +VS+K+IRNK G EGYGFVEF SH A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETFR 138
+VL+ +NGT MP T+Q FRLNWASF GEKR + GP+ SIFVGDL+PDV+D LL ETF
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+YPSV+ AKVV D NTGRSKGYGFV+F DENER +AMTEMNGV CS+R MRI ATP+K
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T G+QQQ + P T P + DI NTTIFVG LD +VT+E+LKQ F FG
Sbjct: 279 TNGYQQQGGYM----PNGTLTRP------EGDIMNTTIFVGGLDSSVTDEDLKQPFNEFG 328
Query: 259 EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
EIV+VKIP+G+GCGFVQF R +AEEA+ ++ G +IG+Q VR+SWGR
Sbjct: 329 EIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 375
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 167/284 (58%), Positives = 205/284 (72%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E+R+LWIGDLQ W DENYL + F TGE + K+IRNK G EGYGF+EFV+HA AER
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
LQTYNG PMP +EQ FRLNWA G GE+R GPEH++FVGDLAPDVTD++L ETF++ Y
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVY 197
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
SV+GAKVV D TGRSKGYGFV+F DE+E+ RAMTEMNG +CS+RPMR A KK
Sbjct: 198 SSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLT 257
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
Q P A+Y Q ++D TNTTIFVG +D +VTE++LK F FGE+V
Sbjct: 258 MQ----------P-ASYQN-TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELV 305
Query: 262 NVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
+VKIP G+ CGFVQ+A RA AE+A+ + G +G Q +R+SWGR
Sbjct: 306 HVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 481 (174.4 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 90/188 (47%), Positives = 136/188 (72%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHT-GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
+ +TLW+G+L+ W DEN++ ++ GE V++K+IR++ +G GY FVEF S AA
Sbjct: 44 DSAKTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNA-GYCFVEFPSSEAAT 102
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFG-IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFR 138
+ L NG+P+P +++ F+LNWAS G + ++R + GPE+SIFVGDL P+V +++L F+
Sbjct: 103 KALGL-NGSPVPNSQRVFKLNWASGGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQ 161
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+++PS + AK++TD TG+S+GYGFV+F DE+++ RA+ EM GV+C RPMRIS ATPK
Sbjct: 162 ARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTATPK- 220
Query: 199 TTGFQQQY 206
T QQY
Sbjct: 221 -TRSHQQY 227
Score = 260 (96.6 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 56/125 (44%), Positives = 73/125 (58%)
Query: 188 PMRISAATPKKTTGFQQQ-YAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVT 246
PM ++ G Y +A P A+ P+Q D NTT+FVG L VT
Sbjct: 237 PMNMTPPAQNMQWGMNPYGYQQPQAPPPNTAFNNPMQPMNQFTDPNNTTVFVGGLSGYVT 296
Query: 247 EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
E+EL+ F FG+I VKIP G+GCGFVQF R +AE AI +MQG+ IG +VR+SWGR
Sbjct: 297 EDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRLSWGRS 356
Query: 307 QDVTG 311
Q+ +G
Sbjct: 357 QNNSG 361
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 149/310 (48%), Positives = 204/310 (65%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE-GYGFVEFVSHAAAERVLQ 83
TLW+G+L+ W DEN++ + + GE V++K+IR+K +G+ GY FV+F S AAA + L
Sbjct: 66 TLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL- 124
Query: 84 TYNGTPMPGTEQNFRLNWASFG-IGEK-RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
+ NGTPMP T + F+LNWA+ G + ++ R D GPE+SIFVGDL P+V +Y+L F+S++
Sbjct: 125 SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRF 184
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT-- 199
PS + AK++TDP +G S+GYGFV+F DEN++ RA++EM GV+C RPMRIS ATPK
Sbjct: 185 PSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKGP 244
Query: 200 ---------TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
G Y + A P+ Y P Q D NTT+FVG L VTE+EL
Sbjct: 245 GVVPGGMGMPGPAGMYPPMGAP-PMGFYGAP-QPMNQFTDPNNTTVFVGGLSGYVTEDEL 302
Query: 251 KQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310
+ F FGEI VKIP G+GCGFVQF R +AE AI +MQG+ IG +VR+SWGR Q+ +
Sbjct: 303 RSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNS 362
Query: 311 GSVAAQVDPS 320
G + P+
Sbjct: 363 GPAGSPYRPA 372
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 130/286 (45%), Positives = 179/286 (62%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVS-HAAAERVLQ 83
TLW+G+L+ W E ++ + G+ V +K+IRN+ TG GY FVEF S H A+ +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-- 151
Query: 84 TYNGTPMPGTEQNFRLNWASFG-IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
+ N P+PGT F+LNWAS G + EK E+SIFVGDL+P+V ++ + F S+Y
Sbjct: 152 SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYN 211
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202
S + AK++TDP T S+GYGFV+F DEN++ A+ EM G C RP+R+ ATPK
Sbjct: 212 SCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHV 271
Query: 203 QQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN 262
V + P + + Q P D N+T+FVG L V+EEELK F +FGEIV
Sbjct: 272 FSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVY 331
Query: 263 VKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
VKIP G+GCGFVQF R SAE AI ++QG+ +G ++R+SWGR Q+
Sbjct: 332 VKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQN 377
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 121/284 (42%), Positives = 165/284 (58%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE--GYGFVEFVSHAAAERVL 82
TLW+GDL+ W D ++ +A E V++K++R+K + Y FV+F S AAAER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 83 QTYNGTPMPGTEQNFRLNWASFG-IGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
YN T +PG F+LNWA+ G I PE SIFVGDL P D L TFRS
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
YPS AK++ DP TG S+ YGFV+F E E+ A+ M G C RP+RIS A+PK
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
A P + D NTT+FVG L N++E++L+ F FG I
Sbjct: 266 SIAADSAL--GIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRI 323
Query: 261 VNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304
+N+KIP G+GCGFVQ++ +++AE+AI MQG ++G +R++WG
Sbjct: 324 LNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWG 367
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 469 (170.2 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 100/191 (52%), Positives = 128/191 (67%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPK--- 197
PS RG KVV DP TG SKGYGFVKF DE E+ RA+TE G V +P+R+S A PK
Sbjct: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 198 -KTTGFQQQYA 207
K + Q Y+
Sbjct: 180 VKPVEYSQMYS 190
Score = 44 (20.5 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
MEQ EELYD L
Sbjct: 258 MEQSEELYDAL 268
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 464 (168.4 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 99/191 (51%), Positives = 128/191 (67%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPK--- 197
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G V ++P+R+S A PK
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 198 -KTTGFQQQYA 207
K + Q Y+
Sbjct: 180 VKPVEYSQMYS 190
Score = 44 (20.5 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
MEQ EELYD L
Sbjct: 258 MEQSEELYDAL 268
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 464 (168.4 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 99/191 (51%), Positives = 128/191 (67%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPK--- 197
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G V ++P+R+S A PK
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 198 -KTTGFQQQYA 207
K + Q Y+
Sbjct: 180 VKPVEYSQMYS 190
Score = 44 (20.5 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
MEQ EELYD L
Sbjct: 258 MEQSEELYDAL 268
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 464 (168.4 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 99/191 (51%), Positives = 128/191 (67%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPK--- 197
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G V ++P+R+S A PK
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 198 -KTTGFQQQYA 207
K + Q Y+
Sbjct: 180 VKPVEYSQMYS 190
Score = 44 (20.5 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
MEQ EELYD L
Sbjct: 258 MEQSEELYDAL 268
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 463 (168.0 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 98/191 (51%), Positives = 127/191 (66%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRPMRISAATPK--- 197
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G ++P+R+S A PK
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASR 179
Query: 198 -KTTGFQQQYA 207
K + Q Y+
Sbjct: 180 VKPVEYSQMYS 190
Score = 44 (20.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
MEQ EELYD L
Sbjct: 258 MEQSEELYDAL 268
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 462 (167.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 99/191 (51%), Positives = 127/191 (66%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPK--- 197
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G V +P+R+S A PK
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 198 -KTTGFQQQYA 207
K + Q Y+
Sbjct: 180 VKPVEYSQMYS 190
Score = 44 (20.5 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
MEQ EELYD L
Sbjct: 258 MEQSEELYDAL 268
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 454 (164.9 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 98/190 (51%), Positives = 126/190 (66%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVV-SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE+V S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL DV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPK--- 197
PS RG KVV D G SKGYGFVKF DE E+ RA+TE G V ++P+R+S A PK
Sbjct: 121 PSCRGGKVVLD-QAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKANR 179
Query: 198 -KTTGFQQQY 206
K T + Q Y
Sbjct: 180 MKPTEYNQMY 189
Score = 44 (20.5 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
MEQ EELYD L
Sbjct: 258 MEQSEELYDAL 268
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 255 (94.8 bits), Expect = 6.2e-42, Sum P(3) = 6.2e-42
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 66 GYGFVEFVSHAAAERVLQTYNGTPMPG-------TEQN------FRLNWASFGIGEKRPD 112
GY FVEF + A+ L + N TP+P ++ N FRLNWAS +
Sbjct: 129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIP 187
Query: 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
+ PE S+FVGDL+P T+ L F++++ SV+ +V+TDP TG S+ +GFV+F DE+ER
Sbjct: 188 STPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDER 247
Query: 173 NRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ 205
RA+ EM+G + R +R++ ATP+ Q Q
Sbjct: 248 RRALIEMSGKWFQGRALRVAYATPRNNMMLQLQ 280
Score = 211 (79.3 bits), Expect = 6.2e-42, Sum P(3) = 6.2e-42
Identities = 39/78 (50%), Positives = 53/78 (67%)
Query: 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAIL 287
+ D TNTT+FVG L P TE +L+ F FG I+NV+IP G+ CGFV+F R AE +I
Sbjct: 354 NTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQ 413
Query: 288 RMQGHMIGQQQVRISWGR 305
+QG ++G +R+SWGR
Sbjct: 414 GLQGFIVGGSPIRLSWGR 431
Score = 91 (37.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 44/176 (25%), Positives = 76/176 (43%)
Query: 139 SQYPSVRGAKVVTDPNTGR--SKGYGFVKFLDENERNRAMTEMNGVFCST--RPMRISAA 194
SQ ++ G + DP+T + GY FV+F + + A++ +N P S
Sbjct: 107 SQMININGISFI-DPSTTQLHHAGYCFVEFETQKDAKFALS-LNATPLPNFYSPTTNSQT 164
Query: 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTF 254
P F+ +A+ AT + +TP ++FVG+L P TE +L F
Sbjct: 165 NPTFKRTFRLNWAS-GATLQSSIPSTP-----------EFSLFVGDLSPTATEADLLSLF 212
Query: 255 -LHFGEIVNVKI---PM-GRG-C-GFVQFAARASAEEAILRMQGHMIGQQQVRISW 303
F + V++ P+ G C GFV+F A++ M G + +R+++
Sbjct: 213 QTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAY 268
Score = 74 (31.1 bits), Expect = 6.2e-42, Sum P(3) = 6.2e-42
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNK 59
E RTLW+GDL FDE + ++ + V +K+IR K
Sbjct: 31 EPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAK 69
Score = 64 (27.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 25 TLWIGDLQYWFDENYLSSCF-AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+L++GDL E L S F V +++++ + +TG +GFV F R L
Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252
Query: 84 TYNG 87
+G
Sbjct: 253 EMSG 256
Score = 38 (18.4 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 115 PEHSIFVGDLAPDVTDYLLQE 135
P ++++GDL P + ++E
Sbjct: 32 PPRTLWMGDLDPSFDEATIEE 52
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 411 (149.7 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 87/203 (42%), Positives = 122/203 (60%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVV-SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL + DEN++ F+ GE +KII +++TG GY FVE A+ +R +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG +PG+ + F+LN+A++G KRP+ GPE S+FVGDL +V DY L + F ++
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKF 123
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM-NGVFCSTRPMRISAATPK--K 198
PS +GAKVVTDP G S+GYGFVKF DENE+ +A+ E N +P+RIS A K K
Sbjct: 124 PSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNK 182
Query: 199 TTGFQQQYAAVKATYPVAAYTTP 221
+ + Q Y Y P
Sbjct: 183 ASTYHNQNNTYNTNYQQQYYRQP 205
Score = 40 (19.1 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 377 MEQREELYDPL 387
ME+ EELYD L
Sbjct: 285 MERSEELYDSL 295
Score = 40 (19.1 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 366 DMAAVASALPTMEQREE--LYDPLATPDVDKLNAAYL 400
DM A E+ EE DP DV++LN Y+
Sbjct: 249 DMQGSTEAHDGTEEVEEDPSEDPNPQVDVEELNRQYM 285
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 254 (94.5 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 73/205 (35%), Positives = 109/205 (53%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEV-VSIKIIRNKITGQ-------P---EGYGFVEFVS 74
L++GDL +D+N + +A GE ++++++ N P +GY FV+F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 75 HAAAERVLQTYNGTPMPG-TEQNFRLNWASFGIGEKRPD-----AGPEHSIFVGDLAPDV 128
A L NG +P + +LNWA+ +G SIFVGDLAP+V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T+ L E F ++Y S AK+V D TG SKGYGFVKF + +E+ A++EM GVF + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 189 MRISAATPKKTTGFQQQYAAVKATY 213
+++ P T+G QQQ+ + Y
Sbjct: 235 IKVG---P--TSG-QQQHVSGNNDY 253
Score = 224 (83.9 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 49/99 (49%), Positives = 62/99 (62%)
Query: 215 VAAYTTPVQVFPADNDIT---NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGC 271
++ + PVQ P+ N T NTT+F+G L VTE+EL+ F FG IV VKIP+G+ C
Sbjct: 291 MSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCC 350
Query: 272 GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310
GFVQ+ R SAE AI MQG I +VR+SWGR T
Sbjct: 351 GFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQT 389
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 103/303 (33%), Positives = 157/303 (51%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNK-ITGQPEGYGFVEFVSHAAAERVL 82
R L++G L E+ L F TG V+S+KII +K + YGFVEF AAER +
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAM 149
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
QT NG + +E R+NWA + D IFVGDL+ +V D +L + F S +
Sbjct: 150 QTLNGRRIHQSE--IRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAF-SAFG 206
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202
SV A+V+ D TGRS+GYGFV F + + +A+T M+G + +R +R + A K
Sbjct: 207 SVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSI 266
Query: 203 QQQYA--AVKAT---------YP---VAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
QQ A A+ T +P + +Y VQ PA TT +VGNL P T+
Sbjct: 267 SQQQAMAAMGMTPTTPFGHHHFPTHGIQSYDMVVQQTPA----WQTTCYVGNLTPYTTQN 322
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
++ F +FG ++ ++ RG F++ +A AI ++ G+ + + ++ SWG+ +
Sbjct: 323 DIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNVNGRPLKCSWGKDRP 382
Query: 309 VTG 311
TG
Sbjct: 383 PTG 385
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 95/293 (32%), Positives = 160/293 (54%)
Query: 26 LWIGDLQ-YWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+W+GDL W +E+ + + +KI+R+++ Y FV F + + +Q
Sbjct: 85 MWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQR 144
Query: 85 YNGTPMPGTEQNFRLNWA---SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG +P + + F+LN++ S G ++ ++ E+SIF+GDLAP+V+D L F +Y
Sbjct: 145 -NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKY 203
Query: 142 PS-VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS-AATPKKT 199
P+ ++ AKV+TD +T +SKG+GFVKF + NRA+ EM G ++ +R+ AA
Sbjct: 204 PNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAAGSHVD 263
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
T F+ PV + F D NT+ +G L +TE EL+Q F+ FG+
Sbjct: 264 TSFKPVTKLDHHRVPVPQSQPALNQF---TDPNNTSFTIGGLSGRITESELEQHFIGFGD 320
Query: 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGS 312
+V ++ G+++F +R++AE A L M G MI +++I+WG V+G+
Sbjct: 321 LVYCRVSKDYQTGYIKFYSRSAAESAFLNMYGFMINDCRLQITWGSCVQVSGA 373
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 101/292 (34%), Positives = 158/292 (54%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E RTL++G+L E+++++ F G V K+I G + Y FVEF H A +
Sbjct: 43 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI---FDGSNDPYAFVEFSDHGQASQ 99
Query: 81 VLQTYNGTPMPGTEQNFRLNWA-SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
LQT N + ++ ++NWA G + + D +FVGDL+ +V + L+E F+
Sbjct: 100 ALQTMNKRLL--LDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP 157
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
+ V AKV+ D NT +SKGYGFV + E RA+ +MNG + R +R + AT K
Sbjct: 158 -FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKP- 215
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
G Q++ + Y +Y DN T+++VGN+ ++TE+E++Q F FG
Sbjct: 216 -GDQEK----PSHYNEKSYDEIYNQTSGDN----TSVYVGNI-ASLTEDEIRQGFASFGR 265
Query: 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
I V+I +G FV+F + +A +AI++M +G Q VR SWG+ D TG
Sbjct: 266 ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGD-TG 316
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 102/309 (33%), Positives = 157/309 (50%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
R L++G L E+ L F TG V ++KII +K + YGFVE+ AA+R +Q
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAADRAMQ 143
Query: 84 TYNGTPMPGTEQNFRLNWA-SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
T NG + +E R+NWA + D IFVGDL+ +V D +L + F S +
Sbjct: 144 TLNGRRVHQSE--IRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAF-SVFG 200
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202
SV A+V+ D TGRS+GYGFV F D ++ +A++ M+G + +R +R + A K
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Query: 203 QQQYA--AV--KATYPVAAYTTPVQVFPADNDITN------TTIFVGNLDPNVTEEELKQ 252
QQ A AV T P + P + + N TT +VGNL P T ++
Sbjct: 261 AQQQAMSAVGMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVP 320
Query: 253 TFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGS 312
F +FG +V + RG F++ + +A +AI + G+ + + ++ SWG+ ++ T
Sbjct: 321 LFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDKNSTNP 380
Query: 313 VAAQVDPSQ 321
DPSQ
Sbjct: 381 -QGNFDPSQ 388
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 244 (91.0 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 60/149 (40%), Positives = 89/149 (59%)
Query: 66 GYGFVEFVSHAAAERVLQTYNGTPMPG----TEQNF-----------RLNWASFGIGEKR 110
GY FVEF S A+ L + NG +P ++ NF RLNWAS G
Sbjct: 189 GYCFVEFESFEDAQHAL-SLNGQLLPDIAMPSQSNFPNNPDNQKKYFRLNWAS-GATLSA 246
Query: 111 PDAG-PEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVTDPNTGRSKGYGFVKFLD 168
P PE+S+FVGDL+ T+ L F+ +P S++ +V+TDP +G+S+ +GFV+F +
Sbjct: 247 PIVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTE 306
Query: 169 ENERNRAMTEMNGVFCSTRPMRISAATPK 197
E+ER RA+ EMNG + + RP+R++ ATP+
Sbjct: 307 ESERQRALIEMNGAWFAGRPLRVALATPR 335
Score = 204 (76.9 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 41/76 (53%), Positives = 51/76 (67%)
Query: 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM 289
D NTT+FVG L +V+E L F FG I VKIP G+ CGFV+++ R AEEAI M
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEAEEAIAAM 576
Query: 290 QGHMIGQQQVRISWGR 305
QG +IG +VR+SWGR
Sbjct: 577 QGFVIGGNRVRLSWGR 592
Score = 96 (38.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 24 RTLWIGDLQYWFDENYLSSCF-AHTGEVVSIKIIRNK-----ITGQP---EGYGFVEFVS 74
RTLW+GDL W DEN + + + + V +KII+ K I Q GY FVEF S
Sbjct: 138 RTLWMGDLDPWLDENAIQDLWWSILQKKVVVKIIKPKNMKPDINFQGLTNSGYCFVEFES 197
Query: 75 HAAAERVLQTYNGTPMP 91
A+ L + NG +P
Sbjct: 198 FEDAQHAL-SLNGQLLP 213
Score = 80 (33.2 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
++FVG L+ DV++ L F+ + ++ K+ P K GFVK+ + E A+
Sbjct: 522 TVFVGGLSSDVSEPTLHTLFKP-FGLIQQVKI--PPG----KNCGFVKYSNREEAEEAIA 574
Query: 178 EMNGVFCSTRPMRIS----AATPKKTTGFQQQYAAVKATYPVAA 217
M G +R+S + + KK QQQ A A V A
Sbjct: 575 AMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQQVAQVAQLQVQA 618
Score = 77 (32.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHT--GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
+L++GDL E +L + F + +++++ + I+G+ +GFV F + +R L
Sbjct: 255 SLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEESERQRAL 314
Query: 83 QTYNGTPMPG 92
NG G
Sbjct: 315 IEMNGAWFAG 324
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 96/304 (31%), Positives = 159/304 (52%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
R++++G++ E L FA TG V S K+IR + YGFV + +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK----EKSSYGFVHYFDRRSAGLAIL 109
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
+ NG + G Q ++NWA + G+ R D +IFVGDL+P+VTD +L F S YP+
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASGQ-REDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPT 164
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
A+V+ D TGRS+G+GFV F ++ + A+ E+ G + +R +R + AT T+G
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGED 224
Query: 204 QQYAAVKATYPVAAYTTP-----VQVFPADNDITNTTIFVGNLDPNVTEEELKQTF--LH 256
+Q + K+ + + + +N+ TT++VGNL P V++ +L + F L
Sbjct: 225 KQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG 284
Query: 257 FGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHM-IGQQQVRISWGRKQDVTGSVAA 315
G I V++ +G GFV+++ A AI H + +Q++ SWG K G+ +
Sbjct: 285 AGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASN 344
Query: 316 QVDP 319
+ P
Sbjct: 345 PLPP 348
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 97/305 (31%), Positives = 159/305 (52%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
R++++G++ E L F TG V S K+IR YGFV + +A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRK----DKSSYGFVHYFDRRSAALAIL 114
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
+ NG + G Q ++NWA + G+ R D +IFVGDL+P+VTD L ++F S + S
Sbjct: 115 SLNGRHLFG--QPIKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDATLYQSF-SVFSS 169
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R + AT T+G
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDD 229
Query: 204 QQYAAVKATYPVAAYTTP-----VQVFPADNDITNTTIFVGNLDPNVTEEELKQTF--LH 256
+ + K+ + ++ + +N+ TT++VGNL P VT+ +L + F L
Sbjct: 230 KLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALG 289
Query: 257 FGEIVNVKIPMGRGCGFVQFAARASAEEAIL--RMQGHMIGQQQVRISWGRKQDVTGSVA 314
G I V++ +G GFV++ A AI Q ++ +Q ++ SWG K G+ +
Sbjct: 290 AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQ-IKCSWGNKPTPPGTAS 348
Query: 315 AQVDP 319
+ P
Sbjct: 349 NPLPP 353
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 100/308 (32%), Positives = 157/308 (50%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
R+++ G++ E L FA TG + S K+IR YGFV + A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK----DKSSYGFVHYFDRRCASMAIM 118
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
T NG + G Q ++NWA + G+ R D +IFVGDL+P+VTD L ++F S + S
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDAALFDSF-SAFNS 173
Query: 144 V----RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
R A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R + AT T
Sbjct: 174 CSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGAT 233
Query: 200 TGFQQQYAAVKATYPVAAYTTPV--QVFPADNDITN---TTIFVGNLDPNVTEEELKQTF 254
G + + K+ + ++ ++ D N TT++VGNL P VT+ +L + F
Sbjct: 234 FGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLF 293
Query: 255 --LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH-MIGQQQVRISWGRKQDVTG 311
L G I V++ +G GFV++ A AI + +Q+R SWG K +G
Sbjct: 294 YTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSG 353
Query: 312 SVAAQVDP 319
+ + + P
Sbjct: 354 TASNPLPP 361
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 93/300 (31%), Positives = 151/300 (50%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
RTL++G+L E + F+ G S K+I + P Y FVEF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALA 66
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
NG + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F + +
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEITTEDIKSAF-APFGK 122
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
+ A+VV D TG+SKGYGFV F ++ + A+ M G + R +R + AT K
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP---- 178
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A K+T + + N T++ G + +T++ ++QTF FG+I+ +
Sbjct: 179 ----APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEI 234
Query: 264 KIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DVTGSVAAQVDPSQW 322
++ +G FV+F+ SA AI+ + G I V+ WG++ D+T + QVD SQW
Sbjct: 235 RVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ-QVDYSQW 293
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 96/302 (31%), Positives = 150/302 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E+ RTL++ +L + +L++ F G V+ KII G + Y FVEF H A
Sbjct: 37 EDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKII---FEGLNDPYAFVEFSDHNQATL 93
Query: 81 VLQTYNGTPMPGTEQNFRLNWA----SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQET 136
LQ++NG + E+ + WA G +P+ +FVGDL ++ L+E
Sbjct: 94 ALQSHNGREL--LEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREA 151
Query: 137 FRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196
F ++ V AK++ D NT + KGYGFV + + RA+ EMNG + R +R + AT
Sbjct: 152 F-VKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATR 210
Query: 197 KKTTGFQQQY---------AAVKATYPVAAYTTPVQVF-PADNDITNTTIFVGNLDPNVT 246
K ++ + Y + T ++F A D NT+++VGN+ N+
Sbjct: 211 KPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAAD--NTSVYVGNI-ANLG 267
Query: 247 EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
E+E+++ F FG I V+ +G FV+F + SA AI++M IG Q VR SWG+
Sbjct: 268 EDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKS 327
Query: 307 QD 308
D
Sbjct: 328 GD 329
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 93/302 (30%), Positives = 149/302 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E+ +TL++G+L E + F G S K+I + P Y FVEF H A
Sbjct: 5 EQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP--YCFVEFFEHRHAAA 62
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
L NG + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F +
Sbjct: 63 SLAAMNGRKIMGKE--VKVNWATSPSSQKKDTSNHFH-VFVGDLSPEITTDDIRAAF-AP 118
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 119 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP- 177
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
A KATY + +N T++ G + +TE+ ++QTF FG+I
Sbjct: 178 -------APKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQI 230
Query: 261 VNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQVD-P 319
+ V++ +G FV+F + SA AI+ + G + V+ WG++ S QV P
Sbjct: 231 MEVRVFPDKGYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQVP 290
Query: 320 SQ 321
Q
Sbjct: 291 QQ 292
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 92/304 (30%), Positives = 151/304 (49%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
RTL++G+L E + F+ G S K+I + P Y FVEF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALA 66
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
NG + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F + +
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEITTEDIKSAF-APFGK 122
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
+ A+VV D TG+SKGYGFV F ++ + A+ M G + R +R + AT K
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP---- 178
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A K+T + + N T++ G + +T++ ++QTF FG+I+ +
Sbjct: 179 ----APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEI 234
Query: 264 KIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DVTGS----VAAQVD 318
++ +G FV+F+ SA AI+ + G I V+ WG++ D+T + + VD
Sbjct: 235 RVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVIRFFVD 294
Query: 319 PSQW 322
SQW
Sbjct: 295 YSQW 298
>FB|FBgn0031607 [details] [associations]
symbol:CG15440 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
eggNOG:COG0724 GeneTree:ENSGT00510000047100 EMBL:AY089645
RefSeq:NP_608837.2 UniGene:Dm.4903 SMR:Q8SXG7 IntAct:Q8SXG7
MINT:MINT-300703 STRING:Q8SXG7 EnsemblMetazoa:FBtr0077454
GeneID:33652 KEGG:dme:Dmel_CG15440 UCSC:CG15440-RA
FlyBase:FBgn0031607 InParanoid:Q8SXG7 OMA:EREFSVW OrthoDB:EOG4F7M1N
ChiTaRS:CG15440 GenomeRNAi:33652 NextBio:784624 Uniprot:Q8SXG7
Length = 336
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 75/176 (42%), Positives = 109/176 (61%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
LW+G L+ + EN++ + F GE +++++RNK TG+P GY FV F+S A +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 85 YNGTPMPGTEQ--NFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
NG P+PGT FRLN AS K P E S++VGDL+ DV DY L + F S++
Sbjct: 68 LNGKPIPGTNPIVRFRLNSASNSY--KLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFT 125
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPK 197
S++ AKV+ D + G SKGYGFV+F E+E+ A+ +MNG + T+P++I A PK
Sbjct: 126 SIKTAKVILD-SLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK 180
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 88/297 (29%), Positives = 149/297 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
L NG + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F +
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEITTEDIKAAF-AP 117
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP- 176
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
A K+TY + + N T++ G + +TE+ ++QTF FG+I
Sbjct: 177 -------APKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQI 229
Query: 261 VNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DVTGSVAAQ 316
+ +++ +G F++F++ SA AI+ + G I V+ WG++ D+ V Q
Sbjct: 230 MEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ 286
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 86/286 (30%), Positives = 144/286 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAS 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
L NG + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F +
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEITTEDIKAAF-AP 117
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP- 176
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
A K+TY + +N T++ G + +TE+ ++QTF FG+I
Sbjct: 177 -------APKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 229
Query: 261 VNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
+ +++ +G FV+F + SA AI+ + G I V+ WG++
Sbjct: 230 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKE 275
Score = 132 (51.5 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEAILRM 289
+FVG+L P +T E++K F FG I + ++ +G GFV F + AE AI +M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 290 QGHMIGQQQVRISWGRKQ 307
G +G +Q+R +W ++
Sbjct: 157 GGQWLGGRQIRTNWATRK 174
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 125
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 185 IRTNWATRKPP--------APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 297 DMTKNFQ-QVDYSQW 310
Score = 175 (66.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 61
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 62 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 106
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRK 193
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 125
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 185 IRTNWATRKPP--------APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 297 DMTKNFQ-QVDYSQW 310
Score = 175 (66.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 61
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 62 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 106
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 125
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 185 IRTNWATRKPP--------APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 297 DMTKNFQ-QVDYSQW 310
Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 61
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 62 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 106
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 125
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 185 IRTNWATRKPP--------APKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 297 DMTKNFQ-QVDYSQW 310
Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 61
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 62 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 106
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 125
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 185 IRTNWATRKPP--------APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 297 DMTKNFQ-QVDYSQW 310
Score = 175 (66.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 61
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 62 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 106
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 67
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 124
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 125 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 183
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 184 IRTNWATRKPP--------APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 235
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 236 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 295
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 296 DMTKNFQ-QVDYSQW 309
Score = 175 (66.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 3 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 60
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 61 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 105
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 106 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 165
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 166 DAENAIVHMGGQWLGGRQIRTNWATRK 192
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 125
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 185 IRTNWATRKPP--------APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 297 DMTKNFQ-QVDYSQW 310
Score = 175 (66.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 61
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 62 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 106
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR--------NKITG-------QPEGYG 68
RTL++G+L E + F+ G S K+I N G + Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 69 FVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDV 128
FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEI 125
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 189 MRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEE 248
+R + AT K A K+T + + N T++ G + +T++
Sbjct: 185 IRTNWATRKPP--------APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 249 ELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ- 307
++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG++
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 308 DVTGSVAAQVDPSQW 322
D+T + QVD SQW
Sbjct: 297 DMTKNFQ-QVDYSQW 310
Score = 175 (66.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGR-SKGYGFVKFLDE 169
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R + GF L
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGF-SVLQH 61
Query: 170 NERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
N +C R +AA G + VK + TTP
Sbjct: 62 TS--------NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---Q 106
Query: 228 DNDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARA 280
D +N +FVG+L P +T E++K F FG+I + ++ +G GFV F +
Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 281 SAEEAILRMQGHMIGQQQVRISWGRKQ 307
AE AI+ M G +G +Q+R +W ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRK 193
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 89/307 (28%), Positives = 150/307 (48%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPDVTD 130
L NG + G E ++NWA+ +K+ + +H +FVGDL+P++T
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R
Sbjct: 120 EDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
+ AT K A K+TY + + N T++ G + +TE+ +
Sbjct: 179 TNWATRKPP--------APKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLM 230
Query: 251 KQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DV 309
+QTF FG+I+ +++ +G FV+F++ SA AI+ + G I V+ WG++ D+
Sbjct: 231 RQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDM 290
Query: 310 TGSVAAQ 316
V Q
Sbjct: 291 INPVQQQ 297
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 84/304 (27%), Positives = 154/304 (50%)
Query: 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
M ++ RTL++G+L E + F+ G S K+I + P Y FVEF +
Sbjct: 3 MDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP--YCFVEFYENRH 60
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETF 137
A L NG + G ++ ++NWAS +K+ + H +FVGDL+P+++ ++ F
Sbjct: 61 AAAALAAMNGRKILG--KDMKVNWASTPSSQKKDTSNHFH-VFVGDLSPEISTDDVRAAF 117
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ + + A+VV D TG+SKGYGF+ F+++ + A+ +MNG + R +R + AT K
Sbjct: 118 -APFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176
Query: 198 KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHF 257
+ A + + + +V + +N T++ G + ++++ ++QTF F
Sbjct: 177 PSAPKSNNEGAS------SKHLSYEEVLNQSSP-SNCTVYCGGIASGLSDQLMRQTFSPF 229
Query: 258 GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQV 317
G+I+ +++ +G FV+F + A AI+ + G I V+ WG++ S+
Sbjct: 230 GQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMP 289
Query: 318 DPSQ 321
P Q
Sbjct: 290 MPQQ 293
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 89/307 (28%), Positives = 149/307 (48%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPDVTD 130
L NG + G E ++NWA+ +K+ + +H +FVGDL+P++T
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R
Sbjct: 120 EDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
+ AT K A K+TY + +N T++ G + +TE+ +
Sbjct: 179 TNWATRKPP--------APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLM 230
Query: 251 KQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DV 309
+QTF FG+I+ +++ +G FV+F + SA AI+ + G I V+ WG++ D+
Sbjct: 231 RQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDM 290
Query: 310 TGSVAAQ 316
V Q
Sbjct: 291 INPVQQQ 297
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 89/307 (28%), Positives = 149/307 (48%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPDVTD 130
L NG + G E ++NWA+ +K+ + +H +FVGDL+P++T
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R
Sbjct: 120 EDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
+ AT K A K+TY + +N T++ G + +TE+ +
Sbjct: 179 TNWATRKPP--------APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLM 230
Query: 251 KQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DV 309
+QTF FG+I+ +++ +G FV+F + SA AI+ + G I V+ WG++ D+
Sbjct: 231 RQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDM 290
Query: 310 TGSVAAQ 316
V Q
Sbjct: 291 INPVQQQ 297
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 87/304 (28%), Positives = 149/304 (49%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+TL++G+L E + F+ G + K+I + P Y FVEF H A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALA 60
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPDVTDYLL 133
NG + G E ++NWA+ +K+ + +H +FVGDL+P++T +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 118
Query: 134 QETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193
+ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R +
Sbjct: 119 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 177
Query: 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQT 253
AT K A K+TY + + N T++ G + +TE+ ++QT
Sbjct: 178 ATRKPP--------APKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQT 229
Query: 254 FLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DVTGS 312
F FG+I+ +++ +G F++F++ SA AI+ + G I V+ WG++ D+
Sbjct: 230 FSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP 289
Query: 313 VAAQ 316
V Q
Sbjct: 290 VQQQ 293
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 89/307 (28%), Positives = 149/307 (48%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPDVTD 130
L NG + G E ++NWA+ +K+ + +H +FVGDL+P++T
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R
Sbjct: 120 EDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
+ AT K A K+TY + +N T++ G + +TE+ +
Sbjct: 179 TNWATRKPP--------APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLM 230
Query: 251 KQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DV 309
+QTF FG+I+ +++ +G FV+F + SA AI+ + G I V+ WG++ D+
Sbjct: 231 RQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDM 290
Query: 310 TGSVAAQ 316
V Q
Sbjct: 291 INPVQQQ 297
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 317 (116.6 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 85/301 (28%), Positives = 149/301 (49%)
Query: 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
M + +TL++G+L E+ L + F+ G V S KIIR G + Y F+E+ ++ A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP--GN-DPYAFIEYSNYQA 57
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETF 137
A L N E+ ++NWA+ + + D H IFVGDL+P++ L+E F
Sbjct: 58 ATTALTAMNKRLF--LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF 115
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT-- 195
+ + + ++V DP+T +SKGY FV F+ + E A+ MNG + +R +R + +T
Sbjct: 116 -APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
Query: 196 ---PKKTTGFQQQYAAVK------ATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVT 246
P++ + Q + + + T +V+ + TNTT++ G PNV
Sbjct: 175 LPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSP-TNTTVYCGGFPPNVI 233
Query: 247 EEELKQT-FLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
++L F+ FG I +V++ +G F++F + +A AI + V+ WG+
Sbjct: 234 SDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGK 293
Query: 306 K 306
+
Sbjct: 294 E 294
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKI---P---MGRGCGFVQFAARASAEEAILRM 289
IFVG+L P + E L++ F FGEI N +I P +G FV F +A AE AI M
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 290 QGHMIGQQQVRISWGRKQ 307
G IG + +R +W ++
Sbjct: 157 NGQWIGSRSIRTNWSTRK 174
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 86/296 (29%), Positives = 145/296 (48%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPDVTD 130
L NG + G E ++NWA+ +K+ + +H +FVGDL+P++T
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R
Sbjct: 120 EDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
+ AT K A K+TY + +N T++ G + +TE+ +
Sbjct: 179 TNWATRKPP--------APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLM 230
Query: 251 KQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
+QTF FG+I+ +++ +G FV+F + SA AI+ + G I V+ WG++
Sbjct: 231 RQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKE 286
Score = 181 (68.8 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 56/202 (27%), Positives = 98/202 (48%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171
D P+ +++VG+L+ DVT+ L+ + F SQ + K++ D T + Y FV+F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLF-SQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 172 RNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDI 231
A+ MNG + ++++ AT T Q++ T+ V
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQKKD------------TSSSTVVSTQRSQ 103
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEA 285
+ +FVG+L P +T E++K F FG I + ++ +G GFV F + AE A
Sbjct: 104 DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163
Query: 286 ILRMQGHMIGQQQVRISWGRKQ 307
I +M G +G +Q+R +W ++
Sbjct: 164 IQQMGGQWLGGRQIRTNWATRK 185
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 70/179 (39%), Positives = 107/179 (59%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ +LW+G+L+ + DE+++ FA GE VV I++IR+KITG+ GYGFVE A ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 82 LQTYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
L+ NG P+PG + F+L+ +++G K+ ++ S+FV DL PDV D +L E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESST-FSLFVSDLTPDVDDGMLYEFFHY 116
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRPMRISAATPK 197
+ S K+V D N G SK GFV F E E+ RA+ ++ G + +R+S A+ +
Sbjct: 117 HFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 88/316 (27%), Positives = 146/316 (46%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRN------KITGQPEG----------- 66
+TL++G+L EN + F G S K+I K+ G
Sbjct: 8 KTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDP 67
Query: 67 YGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAP 126
Y FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSP 124
Query: 127 DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186
++T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G +
Sbjct: 125 EITTDDIRAAF-APFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 183
Query: 187 RPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVT 246
R +R + AT K A K+ +A + N T++ G + +T
Sbjct: 184 RQIRTNWATRKPP--------APKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLT 235
Query: 247 EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
E ++QTF FG+I+ +++ +G F++F++ SA AI+ + G I V+ WG++
Sbjct: 236 EHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKE 295
Query: 307 QDVTGSVAAQVDPSQW 322
++ QW
Sbjct: 296 SPDMAKNVQPMEYGQW 311
Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 56/213 (26%), Positives = 96/213 (45%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN-TGRSKGYGFVKFLDEN 170
D +++VG+L+ DVT+ L+ + F +Q + K++T+ + + R + F
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLF-TQIGPCKSCKMITEQSDSSRKMNSSSIGF---- 57
Query: 171 ERNRAMTEMNGVFCSTR--PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPAD 228
+ N +C R +AA G + VK + TTP
Sbjct: 58 --SVLQHTSNDPYCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWA----TTPSS---QK 108
Query: 229 NDITNTT-IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARAS 281
D +N +FVG+L P +T ++++ F FG+I + ++ +G GFV F +
Sbjct: 109 KDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLD 168
Query: 282 AEEAILRMQGHMIGQQQVRISWG-RKQDVTGSV 313
AE AI+ M G +G +Q+R +W RK SV
Sbjct: 169 AENAIVHMGGQWLGGRQIRTNWATRKPPAPKSV 201
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 76/255 (29%), Positives = 128/255 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
L NG + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F +
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEITTEDIKAAF-AP 117
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP- 176
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
A K+TY + +N T++ G + +TE+ ++QTF FG+I
Sbjct: 177 -------APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI 229
Query: 261 VNVKIPMGRGCGFVQ 275
+ +++ +G FV+
Sbjct: 230 MEIRVFPDKGYSFVR 244
Score = 132 (51.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEAILRM 289
+FVG+L P +T E++K F FG I + ++ +G GFV F + AE AI +M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 290 QGHMIGQQQVRISWGRKQ 307
G +G +Q+R +W ++
Sbjct: 157 GGQWLGGRQIRTNWATRK 174
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 74/252 (29%), Positives = 127/252 (50%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+TL++G+L E + F+ G + K+I + P Y FVEF H A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALA 60
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
NG + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F + +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEITTEDIKAAF-APFGR 116
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
+ A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 117 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP---- 172
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A K+TY + + N T++ G + +TE+ ++QTF FG+I+ +
Sbjct: 173 ----APKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 228
Query: 264 KIPMGRGCGFVQ 275
++ +G F++
Sbjct: 229 RVFPDKGYSFIR 240
Score = 132 (51.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEAILRM 289
+FVG+L P +T E++K F FG I + ++ +G GFV F + AE AI +M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 290 QGHMIGQQQVRISWGRKQ 307
G +G +Q+R +W ++
Sbjct: 153 GGQWLGGRQIRTNWATRK 170
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 225 (84.3 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 63/187 (33%), Positives = 101/187 (54%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVV-SIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
+ L++G+L E + F+ G V +IKI+ +K Y F+E+ ++ A+ L
Sbjct: 79 KILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDK-NKAGFNYAFIEYDTNEVADMAL 137
Query: 83 QTYNGTPMPGTEQNFRLNWA--SFGI-GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
T NG + E ++NWA S I G P +IFVGDL+P+V D L+ F S
Sbjct: 138 NTLNGRLVDDVE--IKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAF-S 194
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
++ S++ A V+ D T RS+GYGFV F ++++ A+ MNG + R +R + A+ K+
Sbjct: 195 KFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQ 254
Query: 200 TGFQQQY 206
QQQ+
Sbjct: 255 Q--QQQH 259
Score = 114 (45.2 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHM 293
TT+++GN+ ++EL +FG IV+ K RGC FV++ A AI+++ G
Sbjct: 412 TTVYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFN 471
Query: 294 IGQQQVRISWGRKQ 307
+ + ++ WG+++
Sbjct: 472 LNGRPLKCGWGKER 485
Score = 105 (42.0 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAA 78
T E + +++GDL ++ L + F+ + ++ + T + GYGFV F + + A
Sbjct: 168 TEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDA 227
Query: 79 ERVLQTYNGTPMPGTEQNFRLNWAS 103
E LQT NG + G + R NWAS
Sbjct: 228 ELALQTMNGEWLCG--RAIRCNWAS 250
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 272 (100.8 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 69/202 (34%), Positives = 106/202 (52%)
Query: 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167
E R D +FVGDL+ DV++ LL+ TF +++ V AKV+ D T +SKGYGFV F
Sbjct: 216 EMRIDTSKHFHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKSKGYGFVSFP 274
Query: 168 DENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
++ A+ MNG + R +R + A K + + K T+ QVF +
Sbjct: 275 NKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRD-----KLTFE--------QVFNS 321
Query: 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAIL 287
NT+++VGN+ T+ +L+ F +G+I V+I + FV++ + A +AI+
Sbjct: 322 TK-ADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIM 380
Query: 288 RMQGHMIGQQQVRISWGRKQDV 309
M G + QVR SWGR Q V
Sbjct: 381 EMNGKEMAGNQVRCSWGRTQAV 402
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 49/178 (27%), Positives = 83/178 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++GDL L S F GEV K+IR+ T + +GYGFV F + AE +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDA-----------GPEHSIFVGDLAPDVTDYLLQ 134
NG + G ++ R NWA+ E+ D S++VG+++ TD L+
Sbjct: 287 NGKWI-G-KRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 344
Query: 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192
+ F S Y + ++ +++ Y FV++ + +A+ EMNG + +R S
Sbjct: 345 DLF-STYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCS 395
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 270 (100.1 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 74/226 (32%), Positives = 118/226 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVFP-ADNDITNTTIFVGNLDPNVT 246
AA + A P++ P Q+F A + T V L P VT
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPTPVVTALGPGVT 233
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 267 (99.0 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 69/207 (33%), Positives = 112/207 (54%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVFPAD 228
AA + A P++ P Q+F AD
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF-AD 213
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 267 (99.0 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 69/207 (33%), Positives = 112/207 (54%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVFPAD 228
AA + A P++ P Q+F AD
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF-AD 213
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 267 (99.0 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 69/207 (33%), Positives = 112/207 (54%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVFPAD 228
AA + A P++ P Q+F AD
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF-AD 213
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 267 (99.0 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 69/207 (33%), Positives = 112/207 (54%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVFPAD 228
AA + A P++ P Q+F AD
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF-AD 213
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 267 (99.0 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 69/207 (33%), Positives = 112/207 (54%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVFPAD 228
AA + A P++ P Q+F AD
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF-AD 213
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 267 (99.0 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 69/207 (33%), Positives = 112/207 (54%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVFPAD 228
AA + A P++ P Q+F AD
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF-AD 213
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 269 (99.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 77/296 (26%), Positives = 147/296 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V +++ +L D L F+ G ++S K++ ++ G +GYGFV F + AER +
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEEAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S + A + ++++ +L D+ D LQ+ F S+
Sbjct: 156 EKMNGMFL-NDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLF-SR 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
+ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 214 FGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDIT--NTTIFVGNLDPNVTEEELKQTFLH 256
T + ++ +K P ++ P D + ++V NLD + +E L++ F
Sbjct: 273 QTELKHKFGQMKQDKP------KIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSP 326
Query: 257 FGEIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
FG I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 327 FGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 382
Score = 201 (75.8 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 56/163 (34%), Positives = 85/163 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R++ T + GY V F AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IFV +L + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDRSIDSKTLYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KVV D N G SKGYGFV F + E RA+ +MNG+F + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEEAERAIEKMNGMFLNDR 166
Score = 120 (47.3 bits), Expect = 0.00043, P = 0.00043
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S++VGDL PDVT+ +L E F P + +V D T RS GY V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 178 EMNGVFCSTRPMRI 191
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 262 (97.3 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 68/206 (33%), Positives = 111/206 (53%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + ++
Sbjct: 75 NMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ 205
K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHG 188
Query: 206 YAAVK---ATYPVAAYTTPVQVFPAD 228
AA + A P++ P Q+F AD
Sbjct: 189 SAAERLLAAQNPLSQADRPHQLF-AD 213
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 106 IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVK 165
I E+ DA +++VG L V++ LL E F P V + D TG+ +GYGFV+
Sbjct: 6 ISERNQDA----AVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVE 60
Query: 166 FLDENERNRAMTEMNGVFCSTRPMRISAAT 195
FL E + + A+ MN + +P+R++ A+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 201 (75.8 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 53/157 (33%), Positives = 87/157 (55%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E+ L F G V+SI+I R+ I+ + GYG+V F+ A++ L+T
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G ++ RL W+ ++ G ++F+ +L + + L E F S + +
Sbjct: 71 MNFDLIKG--KSIRLMWSQRDACLRKSGIG---NVFIKNLDKSIDNKTLYEHF-SPFGKI 124
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
+KV+TD G SKGYGFV + D+ +RA+ EMNG
Sbjct: 125 MSSKVMTDEE-G-SKGYGFVHYQDQRAADRAIEEMNG 159
Score = 162 (62.1 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 45/168 (26%), Positives = 85/168 (50%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--- 92
D+ L S F+ G+ +S+K++++ +G+ + +GFV F SH AA+ ++ NG + G
Sbjct: 202 DDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
Query: 93 --------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + ++R A +++ +L + D L++ F S + S+
Sbjct: 261 FVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEF-SVFGSI 319
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192
KV+ + G+SKG+G + F +AM EMNG ++P+ I+
Sbjct: 320 CRVKVMQE--AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIA 365
Score = 105 (42.0 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
+++ NLD + +E L++ F FG I VK+ +G G + F + +A +A+ M G
Sbjct: 295 LYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNG 354
Query: 292 HMIGQQQVRISWGRK 306
++G + + I+ G+K
Sbjct: 355 RILGSKPLNIALGQK 369
Score = 86 (35.3 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI---PMGRG--CGFVQFAARASAEEAILR 288
T +++ N ++ +E L+ F +G+ ++VK+ G+ GFV F + +A+ A+
Sbjct: 190 TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVED 249
Query: 289 MQGHMIGQQQVRISWGRKQ 307
M G I Q + + GR Q
Sbjct: 250 MNGRDINGQTIFV--GRAQ 266
Score = 49 (22.3 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 230 DITNTTIFVGNLDPNVTEE-ELKQTF 254
DI TIFVG V + ELK+ F
Sbjct: 254 DINGQTIFVGRAQKKVERQAELKEMF 279
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 260 (96.6 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 79/292 (27%), Positives = 147/292 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA+R +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQDAADRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F S+
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELF-SK 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
Y KV+TDP TG+SKG+GFV F + N+A+ EMNG + + + + A KK
Sbjct: 214 YGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRRFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 202 (76.2 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 55/174 (31%), Positives = 91/174 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F ++ +RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F+ G+ +S+K++ + TG+ +G+GFV F H A +
Sbjct: 188 KEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NG + G E+ L + ++R ++++ +L +
Sbjct: 247 AVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 364 YVALAQRKEERKAHLTNQYMQRIAGMRA 391
Score = 126 (49.4 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 260 (96.6 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 82/300 (27%), Positives = 141/300 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V L++ +L D L F+ G +VS K+ + + GQ GYGFV+F + +A+ +
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAI 191
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
+ NG + +Q F + E D +++V +L+ TD L+ TF QY
Sbjct: 192 EKLNGKVL-NDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTF-GQYG 249
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202
S+ A V+ D + G+S+ +GFV F + + RA+ +NG + + A K
Sbjct: 250 SISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKS---- 304
Query: 203 QQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN 262
++ + Y + N ++V NLD VT+E+L++ F FG I +
Sbjct: 305 -ERELELSRRYEQGSSD-------GGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITS 356
Query: 263 VKI---PMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQDVTGSVAAQ 316
K+ P G +G GFV F+A + A + M G M+G + + ++ RK++ + AQ
Sbjct: 357 CKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQ 416
Score = 192 (72.6 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 62/242 (25%), Positives = 116/242 (47%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL + ++ L F +VVS+++ R+ T GYG+V + + AE+ +Q
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + + G + R+ ++S +R G ++FV +L V + L E F S ++
Sbjct: 107 LNYSYLNG--KMIRITYSSRDSSARRSGVG---NLFVKNLDKSVDNKTLHEAF-SGCGTI 160
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV TD + G+S+GYGFV+F E+ A+ ++NG + + + + K+ ++
Sbjct: 161 VSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKE----ER 215
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ AA K + Y + D+++ T G++ V + FG VN +
Sbjct: 216 ESAADKMKF-TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFG-FVNFE 273
Query: 265 IP 266
P
Sbjct: 274 NP 275
Score = 158 (60.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 56/233 (24%), Positives = 105/233 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++ +L ++ L + F G + S ++R+ G+ +GFV F + A R ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 86 NGTPMPGTE--------QNFRLNWASFGIGEKRPDAGPEH---SIFVGDLAPDVTDYLLQ 134
NG E ++ R S + D G + +++V +L VTD L+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194
E F +++ ++ KV+ DP+ G SKG GFV F +E +R + EMNG +P+ ++ A
Sbjct: 346 ELF-AEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Query: 195 TPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNV 245
K + Q Q++ ++ + + + +F IF G P +
Sbjct: 404 QRKEERRAKLQAQFSQMRPAF-IPGVGPRMPIFTGGAPGLGQQIFYGQGPPPI 455
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 259 (96.2 bits), Expect = 4.7e-20, P = 4.7e-20
Identities = 80/294 (27%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
NG + + F + S E A + ++++ + D+ D L+E F
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKY 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD N G+SKG+GFV F + +A+ EMNG + + M + A K +
Sbjct: 215 GPAL-SVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ FL FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFLPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 207 (77.9 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Score = 179 (68.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 58/204 (28%), Positives = 97/204 (47%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--- 92
DE L F G +S+K++ + G+ +G+GFV F H A++ + NG M G
Sbjct: 204 DER-LKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Query: 93 --------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + + R +++V +L + D L++ F + ++
Sbjct: 262 FVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLP-FGTI 320
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK------ 198
AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+ ++ A K+
Sbjct: 321 TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 378
Query: 199 TTGFQQQYAAVKATYPVA-AYTTP 221
T + Q+ A+V+ PV Y P
Sbjct: 379 TNQYMQRMASVRVPNPVINPYQPP 402
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 258 (95.9 bits), Expect = 6.5e-20, P = 6.5e-20
Identities = 78/297 (26%), Positives = 147/297 (49%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D L F+ G +VS K+ + +GQ +GYGFV++ + +A++ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145
NG + +Q + + + + +++V +LA TD L+ F +Y +
Sbjct: 185 NGMLL-NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF-GEYGKIT 242
Query: 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ 205
A V+ D G+SKG+GFV F + ++ RA+ +NG + + A K ++
Sbjct: 243 SAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS-----ER 296
Query: 206 YAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI 265
++ Y + A + ++ ++V NLDP++++E+LK+ F FG + + K+
Sbjct: 297 ETELRVRYEQ-------NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 349
Query: 266 ---PMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQDVTGSVAAQ 316
P G +G GFV FA A EA+ ++ G MI + + ++ RK+D + AQ
Sbjct: 350 MRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQ 406
Score = 213 (80.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 48/167 (28%), Positives = 93/167 (55%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL + ++ L F G VV++++ R+ +T + GYG+V F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N P+ G + R+ ++ +R AG +IF+ +L + L +TF S + ++
Sbjct: 97 LNYIPLYG--KPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTF-SSFGNI 150
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191
KV D ++G+SKGYGFV++ +E +A+ ++NG+ + + + +
Sbjct: 151 VSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 128 (50.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADND--ITNT---TIFVGNLDPNVTEEELKQTF 254
T Q A++ + Y P++V + D + + IF+ NLD ++ + L TF
Sbjct: 85 TNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 255 LHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS-WGRKQD 308
FG IV+ K+ + +G GFVQ+A SA++AI ++ G ++ +QV + + R+Q+
Sbjct: 145 SSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQE 204
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 256 (95.2 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 75/292 (25%), Positives = 145/292 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA+R +
Sbjct: 99 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQDAADRAI 156
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F +
Sbjct: 157 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELF-DK 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
Y KV+TDP TG+S+G+GFV + + N+A+ EMNG + + + + A K
Sbjct: 215 YGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK--- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 --MERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 321
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 322 TSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 373
Score = 203 (76.5 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 55/174 (31%), Positives = 91/174 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 73 MNFDVVKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 126
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F ++ +RA+ +MNG+ + R + + +K
Sbjct: 127 LSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 178
Score = 187 (70.9 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 55/208 (26%), Positives = 102/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G+ +S+K++ + TG+ G+GFV + H A +
Sbjct: 189 KEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANK 247
Query: 81 VLQTYNGTPMPGT-----------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NGT + G E+ L + ++R ++++ +L +
Sbjct: 248 AVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 307
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 308 DEKLRKEF-SPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 365 YVALAQRKEERKAHLTNQYMQRIAGMRA 392
Score = 125 (49.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PD+T+ +L E F P V +V D T RS GY +V F + R
Sbjct: 10 PMASLYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 68
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 69 ALDTMNFDVVKGKPIRI 85
Score = 37 (18.1 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 279 RASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAA 315
R+ EEA+ +Q H Q + +K VT + AA
Sbjct: 603 RSKVEEAVAVLQAH-----QAKKDATQKVGVTAATAA 634
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 236 (88.1 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 60/175 (34%), Positives = 98/175 (56%)
Query: 57 RNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPE 116
++++TGQ +GYGFVEF+S A+ ++ N + G + R+N AS K D G
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYG--KPIRVNKAS--AHNKNLDVGA- 57
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAM 176
+IF+G+L P++ + LL +TF + ++ K++ DP+TG SKGY F+ F + + A+
Sbjct: 58 -NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 116
Query: 177 TEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVK---ATYPVAAYTTPVQVFPAD 228
MNG + RP+ +S A K + G + AA + A P++ P Q+F AD
Sbjct: 117 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF-AD 170
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IF+GNLDP + E+ L TF FG I+
Sbjct: 27 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQT 86
Query: 264 -KI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G +G F+ FA+ +++ AI M G + + + +S+ K+D G
Sbjct: 87 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 141
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 249 (92.7 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 59/189 (31%), Positives = 99/189 (52%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
EE TL++G L + D+ +L F H G V+ ++I + TG+ GYG+V+F S +AAE+
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 81 VLQTYNGTPMPGTEQNFRLNW----ASFGIGEKRPDAG-----PEHSIFVGDLAPDVTDY 131
L+ G + G N ++ AS ++ G P ++F+G+L+ +
Sbjct: 225 ALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRD 284
Query: 132 LLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191
L F +Y +V +V T P+T + KG+G+V+F +E A+ MNG + RP R+
Sbjct: 285 NLFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRL 343
Query: 192 SAATPKKTT 200
+TP+ T
Sbjct: 344 DFSTPRDNT 352
Score = 197 (74.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 59/215 (27%), Positives = 103/215 (47%)
Query: 106 IGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGF 163
+ + +P A E ++FVG L+ ++ D L+ F V GA+V+ + TG+S+GYG+
Sbjct: 155 VKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFE-HIGGVIGARVIMERATGKSRGYGY 213
Query: 164 VKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQ 223
V F ++ +A+ EM G RP+ + +T K A K+ A Q
Sbjct: 214 VDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPH--------ASKSNNDRAKQYGDSQ 265
Query: 224 VFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP------MGRGCGFVQFA 277
P+D T+F+GNL N + L F +G +++ ++P +G G+VQF+
Sbjct: 266 SPPSD------TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFS 319
Query: 278 ARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGS 312
+ A+ A+ M G I + R+ + +D T +
Sbjct: 320 SVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 249 (92.7 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 59/189 (31%), Positives = 99/189 (52%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
EE TL++G L + D+ +L F H G V+ ++I + TG+ GYG+V+F S +AAE+
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 81 VLQTYNGTPMPGTEQNFRLNW----ASFGIGEKRPDAG-----PEHSIFVGDLAPDVTDY 131
L+ G + G N ++ AS ++ G P ++F+G+L+ +
Sbjct: 225 ALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRD 284
Query: 132 LLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191
L F +Y +V +V T P+T + KG+G+V+F +E A+ MNG + RP R+
Sbjct: 285 NLFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRL 343
Query: 192 SAATPKKTT 200
+TP+ T
Sbjct: 344 DFSTPRDNT 352
Score = 197 (74.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 59/215 (27%), Positives = 103/215 (47%)
Query: 106 IGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGF 163
+ + +P A E ++FVG L+ ++ D L+ F V GA+V+ + TG+S+GYG+
Sbjct: 155 VKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFE-HIGGVIGARVIMERATGKSRGYGY 213
Query: 164 VKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQ 223
V F ++ +A+ EM G RP+ + +T K A K+ A Q
Sbjct: 214 VDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPH--------ASKSNNDRAKQYGDSQ 265
Query: 224 VFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP------MGRGCGFVQFA 277
P+D T+F+GNL N + L F +G +++ ++P +G G+VQF+
Sbjct: 266 SPPSD------TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFS 319
Query: 278 ARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGS 312
+ A+ A+ M G I + R+ + +D T +
Sbjct: 320 SVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 227 (85.0 bits), Expect = 7.9e-17, P = 7.9e-17
Identities = 72/289 (24%), Positives = 138/289 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
+ ++I +L D L F+ G+++S K++ + G +GY FV F + +AA+R +
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD-QGS-KGYAFVHFQNQSAADRAI 154
Query: 83 QTYNGTPMPGTEQNF-RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
+ NG + G + R E R A ++++ + D+ D L++ F S+Y
Sbjct: 155 EEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SKY 213
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
KV+TD ++G+SKG+GFV F +A+ EMNG + + + + A KK
Sbjct: 214 GKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ-KKV-- 269
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
++ A +K + ++ +++ NLD + +E+L+ F FG I
Sbjct: 270 --ERQAELKQMFEQLKRE---RI----RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSIS 320
Query: 262 NVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
VK+ +G G + F++ A +A+ M G ++G + + I+ ++
Sbjct: 321 RVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 198 (74.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 52/157 (33%), Positives = 89/157 (56%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E+ L F+ G V+SI+I R+++T + GY +V F+ A A++ L T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G ++ RL W+ +R G ++F+ +L + + L E F S + +
Sbjct: 71 MNFDIIKG--KSIRLMWSQRDAYLRRSGIG---NVFIKNLDKSIDNKTLYEHF-SAFGKI 124
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
+KV++D + G SKGY FV F +++ +RA+ EMNG
Sbjct: 125 LSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNG 159
Score = 95 (38.5 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILR 288
T +++ N ++ +E LK F +G+ ++VK+ +G GFV F + +A++A+
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 289 MQGHMIGQQQVRISWGRKQ 307
M G I Q + + GR Q
Sbjct: 250 MNGRDINGQLIFV--GRAQ 266
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 213 (80.0 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 72/263 (27%), Positives = 127/263 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFA 277
I + K+ M GR G GFV F+
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFS 341
Score = 205 (77.2 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 137 (53.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 55/215 (25%), Positives = 96/215 (44%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F M M V P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCF-------SYMQRMASVRAVPNPV 356
Query: 190 RISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQV 224
I+ P +G+ AA+ T AAY P Q+
Sbjct: 357 -INPYQPAPPSGYFM--AAIPQTQNRAAYYPPSQI 388
Score = 125 (49.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
Score = 108 (43.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
IF+ NLD ++ + L TF FG I++ K+ +G GFV F + +AE AI +M G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 292 HMIGQQQV 299
++ ++V
Sbjct: 161 MLLNDRKV 168
Score = 94 (38.1 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILR 288
T +++ N ++ +E LK F FG ++VK+ +G GFV F A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 289 MQGHMIGQQQVRISWGRKQ 307
M G + +Q+ + GR Q
Sbjct: 251 MNGKELNGKQIYV--GRAQ 267
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 252 (93.8 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 82/303 (27%), Positives = 149/303 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F +H AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETHEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKY 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ +V+TD ++G+SKG+GFV F + RA+ EMNG + + + + A K +
Sbjct: 215 GPAL-SIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K T Q ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-----MTRYQ---------GVNLYVKNLDDGLDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQDVTGSV 313
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ RK++ +
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 378
Query: 314 AAQ 316
+Q
Sbjct: 379 TSQ 381
Score = 200 (75.5 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 55/174 (31%), Positives = 89/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ +T + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 57/208 (27%), Positives = 104/208 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +SI+++ + +G+ +G+GFV F H A+R
Sbjct: 188 KEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQR 246
Query: 81 VLQTYNGTPMPGTE--------QNFRLNWASFGIGEKRPDAGPEH---SIFVGDLAPDVT 129
+ NG M G + + R + + D + +++V +L +
Sbjct: 247 AVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLD 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T+ + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTSQYMQRMASVRA 391
Score = 129 (50.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMMTRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 227 (85.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 72/289 (24%), Positives = 138/289 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
+ ++I +L D L F+ G+++S K++ + G +GY FV F + +AA+R +
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD-QGS-KGYAFVHFQNQSAADRAI 212
Query: 83 QTYNGTPMPGTEQNF-RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
+ NG + G + R E R A ++++ + D+ D L++ F S+Y
Sbjct: 213 EEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SKY 271
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
KV+TD ++G+SKG+GFV F +A+ EMNG + + + + A KK
Sbjct: 272 GKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ-KKV-- 327
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
++ A +K + ++ +++ NLD + +E+L+ F FG I
Sbjct: 328 --ERQAELKQMFEQLKRE---RI----RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSIS 378
Query: 262 NVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
VK+ +G G + F++ A +A+ M G ++G + + I+ ++
Sbjct: 379 RVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 198 (74.8 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 52/157 (33%), Positives = 89/157 (56%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E+ L F+ G V+SI+I R+++T + GY +V F+ A A++ L T
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G ++ RL W+ +R G ++F+ +L + + L E F S + +
Sbjct: 129 MNFDIIKG--KSIRLMWSQRDAYLRRSGIG---NVFIKNLDKSIDNKTLYEHF-SAFGKI 182
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
+KV++D + G SKGY FV F +++ +RA+ EMNG
Sbjct: 183 LSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNG 217
Score = 95 (38.5 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILR 288
T +++ N ++ +E LK F +G+ ++VK+ +G GFV F + +A++A+
Sbjct: 248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 307
Query: 289 MQGHMIGQQQVRISWGRKQ 307
M G I Q + + GR Q
Sbjct: 308 MNGRDINGQLIFV--GRAQ 324
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 251 (93.4 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 77/292 (26%), Positives = 146/292 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAADKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ DPN G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 214 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 199 (75.1 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 54/174 (31%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F + ++A+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 189 (71.6 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 54/208 (25%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F+ G+ +S+K++R+ G+ +G+GFV + H A +
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NG + G E+ L + ++R ++++ +L +
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 364 YVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 118 (46.6 bits), Expect = 0.00067, P = 0.00067
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 251 (93.4 bits), Expect = 5.4e-19, P = 5.4e-19
Identities = 77/292 (26%), Positives = 146/292 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAADKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ DPN G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 214 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 199 (75.1 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 54/174 (31%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F + ++A+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 189 (71.6 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 54/208 (25%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F+ G+ +S+K++R+ G+ +G+GFV + H A +
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NG + G E+ L + ++R ++++ +L +
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 364 YVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 118 (46.6 bits), Expect = 0.00071, P = 0.00071
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 249 (92.7 bits), Expect = 6.7e-19, P = 6.7e-19
Identities = 76/289 (26%), Positives = 145/289 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D L F+ G ++S K++ ++ G +GY FV F + AA++ ++
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAADKAIEKM 60
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQYPS 143
NG + + F + S E A + ++++ + +V D L+E F SQ+
Sbjct: 61 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQFGK 118
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
KV+ DPN G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 119 TLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ-KKV---- 172
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
++ A +K + + + N +++ NLD + +E+L++ F FG I +
Sbjct: 173 ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSITSA 225
Query: 264 KIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 226 KVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 274
Score = 189 (71.6 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 54/208 (25%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F+ G+ +S+K++R+ G+ +G+GFV + H A +
Sbjct: 90 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 148
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NG + G E+ L + ++R ++++ +L +
Sbjct: 149 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 208
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 209 DEKLRKEF-SPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 265
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 266 YVALAQRKEERKAHLTNQYMQRVAGMRA 293
Score = 43 (20.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 201 GFQQQYAAVKAT--YPVAAYTTPVQVFPADNDITNTTIFVGNLDPN 244
GFQ +A++ + P + P PA + TT VG+ P+
Sbjct: 347 GFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPD 392
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 210 (79.0 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 60/226 (26%), Positives = 109/226 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++ +L+ DE L F+ G+ S+K++R+ GQ G+GF+ F H A++ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 86 NGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQ 134
NG + G E+ L + ++R + +++V +L + D L+
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194
E F S Y + AKV+T+ + SKG+GFV F E +A+TEMNG T+P+ ++ A
Sbjct: 312 EVF-STYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 195 TPKKTTG--FQQQYAAVKATYPVAAYTTPVQ-VFPADNDITNTTIF 237
K+ QY + ++++ P + PA + T T++
Sbjct: 369 QRKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTTQTMY 414
Score = 190 (71.9 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
Identities = 52/163 (31%), Positives = 83/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G Q R+ W+ G +R G +IF+ +L + + L +TF S + S+
Sbjct: 72 MNFEMIKG--QPIRIMWSHRDPGLRRSGMG---NIFIKNLENSIDNKALYDTF-STFGSI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
+KVV N S+G+GFV F +A+ MNG+ + R
Sbjct: 126 LSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
Score = 123 (48.4 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S++VGDL PDVT+ +L E F S ++ +V D T RS GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEMF-SPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 178 EMNGVFCSTRPMRI 191
MN +P+RI
Sbjct: 71 TMNFEMIKGQPIRI 84
Score = 108 (43.1 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
Identities = 21/84 (25%), Positives = 46/84 (54%)
Query: 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEE 284
N ++V NLD ++ ++ LK+ F +G I + K+ +G GFV F++ A +
Sbjct: 289 NRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATK 348
Query: 285 AILRMQGHMIGQQQVRISWGRKQD 308
A+ M G ++G + + ++ ++++
Sbjct: 349 AVTEMNGRIVGTKPLYVALAQRKE 372
Score = 99 (39.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQG 291
IF+ NL+ ++ + L TF FG I++ K+ RG GFV F +A++AI M G
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG 160
Query: 292 HMIGQQQV 299
++ ++V
Sbjct: 161 MLLNDRKV 168
Score = 93 (37.8 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP-----MGRGCGFVQFAARASAEEAILR 288
T I+V NL ++ E+ L+ F FG+ +VK+ RG GF+ F A++A+
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 289 MQGHMIGQQQVRISWGRKQ 307
M G + Q + + GR Q
Sbjct: 251 MNGKEVSGQLLYV--GRAQ 267
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 242 (90.2 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 78/291 (26%), Positives = 138/291 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ + G +GY +V F S AAA R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NGS-KGYAYVHFDSLAAANRAI 162
Query: 83 QTYNGTPMPGTEQNF-RLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
NG + + R + E R D ++FV + D+ D L++ F S+
Sbjct: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLF-SE 221
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
Y KV+ D TG+SKG+GFV++ +A+ E++G + + + A K +
Sbjct: 222 YGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIER 280
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++++ +K + T P V P I++ NLD + +E+LK+ F FG
Sbjct: 281 LAELRRRFERLK----LKDKTRPPGV-P---------IYIKNLDETINDEKLKEEFSLFG 326
Query: 259 EIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
I K+ M G+G G V F++ A +A+ M G ++G + + ++ G+
Sbjct: 327 SISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Score = 170 (64.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 55/166 (33%), Positives = 81/166 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++GDL E+ L F G + +I R+ +T P GYG+V F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145
N + G + FRL W+ ++ G +IF+ +L + + L F S + ++
Sbjct: 80 NFDLING--KPFRLMWSQPDDHLRKSGVG---NIFIKNLDKSIDNRALFYLF-SAFGNIL 133
Query: 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191
KVV D N G SKGY +V F NRA+ MNGV + R + +
Sbjct: 134 SCKVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
+++VGDL PDVT+ +L + FR P +R ++ DP T GYG+V F + A+
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 178 EMNGVFCSTRPMRISAATP 196
MN + +P R+ + P
Sbjct: 78 TMNFDLINGKPFRLMWSQP 96
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 193 (73.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 64/219 (29%), Positives = 101/219 (46%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT-GQPEGYGFVEFVSHAAA 78
E+ +T L + L + L S F GE+ S K++R+KIT GQ GYGFV ++ A
Sbjct: 62 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDA 121
Query: 79 ERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQET 136
E+ + T NG RL + + RP + + +++V L +T L++
Sbjct: 122 EKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 172
Query: 137 FRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAA 194
F SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 173 F-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 231
Query: 195 T-PKKT---TGFQQQYAAVKATYPVAAYTTPVQVFPADN 229
P + T Q Y + YP Q F DN
Sbjct: 232 NNPSQKVNHTILSQLYQSPNRRYP-GPLAQQAQRFRLDN 269
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
AG IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E
Sbjct: 302 AGTGWCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 360
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ +NG R +++S T K
Sbjct: 361 AMAIASLNGYRLGDRVLQVSFKTSK 385
Score = 95 (38.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 33/108 (30%), Positives = 51/108 (47%)
Query: 206 YAAVKATY-PVA--AYTTPVQV-FPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
Y +K+ + P+A T+ + FP T IFV NL P+ E L Q F FG +
Sbjct: 275 YGGIKSRFSPMAIDGMTSLAGINFPGHAG-TGWCIFVYNLAPDADESILWQMFGPFGAVT 333
Query: 262 NVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303
NVK+ +G GFV A AI + G+ +G + +++S+
Sbjct: 334 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 381
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 211 (79.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 68/222 (30%), Positives = 108/222 (48%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F G V SI++ R+ +T + GY +V + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G Q RL W+ ++ G +IFV +L + + L +TF S + ++
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTG---NIFVKNLDKSIDNKALFDTF-SMFGNI 130
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT----- 199
KV TD G+SK YGFV + DE A+ ++NGV ++ + + K
Sbjct: 131 LSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATND 189
Query: 200 TGFQQQYAAVKATYPVAAYTTPV-QVFPADNDITNTTIFVGN 240
T F Y VK +P + T + Q+F +IT+ + + N
Sbjct: 190 TKFTNLY--VK-NFPDSVTETHLRQLFNPYGEITSMIVKMDN 228
Score = 87 (35.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI-----PMGRGCGFVQFAARASAE 283
N +++ NLD + + L++ F FG I + K+ +G GFV FA++ A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 284 EAILRMQGHMIGQQQVRISWGRKQD 308
+A+ M +I + + + K++
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKRE 529
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 291 GHMIGQQQVRISWGRKQDVTGSVAAQVD 318
G+M Q+Q+ ++ KQ S A Q++
Sbjct: 711 GNMNNQKQLPLNINNKQQNAASQANQMN 738
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 211 (79.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 68/222 (30%), Positives = 108/222 (48%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F G V SI++ R+ +T + GY +V + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G Q RL W+ ++ G +IFV +L + + L +TF S + ++
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTG---NIFVKNLDKSIDNKALFDTF-SMFGNI 130
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT----- 199
KV TD G+SK YGFV + DE A+ ++NGV ++ + + K
Sbjct: 131 LSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATND 189
Query: 200 TGFQQQYAAVKATYPVAAYTTPV-QVFPADNDITNTTIFVGN 240
T F Y VK +P + T + Q+F +IT+ + + N
Sbjct: 190 TKFTNLY--VK-NFPDSVTETHLRQLFNPYGEITSMIVKMDN 228
Score = 87 (35.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI-----PMGRGCGFVQFAARASAE 283
N +++ NLD + + L++ F FG I + K+ +G GFV FA++ A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 284 EAILRMQGHMIGQQQVRISWGRKQD 308
+A+ M +I + + + K++
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKRE 529
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 291 GHMIGQQQVRISWGRKQDVTGSVAAQVD 318
G+M Q+Q+ ++ KQ S A Q++
Sbjct: 711 GNMNNQKQLPLNINNKQQNAASQANQMN 738
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 249 (92.7 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 64/202 (31%), Positives = 110/202 (54%)
Query: 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167
E P + IFVGDL+ ++ L+E F + + + +VV DP T +SKGYGFV F+
Sbjct: 452 EYMPPLHKQFHIFVGDLSSEIETQQLREAF-TPFGEISDCRVVRDPQTLKSKGYGFVSFI 510
Query: 168 DENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPA 227
++E A+T MNG + +R +R + AT K + +K P+ T +V+
Sbjct: 511 KKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKEN----IK---PL----TFDEVYNQ 559
Query: 228 DNDITNTTIFVGNLDPNVT---EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEE 284
+ +N T++VG ++ +T EE L++TF +G I +++ +G FV+F+ + +A
Sbjct: 560 SSP-SNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATH 618
Query: 285 AILRMQGHMIGQQQVRISWGRK 306
AI+ + I Q V+ SWG++
Sbjct: 619 AIVGVHNTEINAQPVKCSWGKE 640
Score = 145 (56.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/183 (24%), Positives = 88/183 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++GDL + L F GE+ +++R+ T + +GYGFV F+ + AE +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 86 NGTPMPGTEQNFRLNWAS------------FGIGEKRPDAGPEH-SIFVGDLAPDVT--- 129
NG + G+ ++ R NWA+ E + P + +++VG + +T
Sbjct: 523 NGQWL-GS-RSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALS 580
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
+ +LQ+TF + Y +++ +V D KGY FV+F + A+ ++ + +P+
Sbjct: 581 EEVLQKTF-APYGAIQEIRVFKD------KGYAFVRFSTKEAATHAIVGVHNTEINAQPV 633
Query: 190 RIS 192
+ S
Sbjct: 634 KCS 636
Score = 129 (50.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKI---PM---GRGCGFVQFAARASAEEAILRM 289
IFVG+L + ++L++ F FGEI + ++ P +G GFV F ++ AE AI M
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 290 QGHMIGQQQVRISWGRKQ 307
G +G + +R +W ++
Sbjct: 523 NGQWLGSRSIRTNWATRK 540
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 247 (92.0 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 76/292 (26%), Positives = 146/292 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAADKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ DP+ G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 214 FGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 199 (75.1 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 54/174 (31%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F + ++A+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 190 (71.9 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 54/208 (25%), Positives = 104/208 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F+ G+ +S+K++R+ +G+ +G+GFV + H A +
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NG + G E+ L + ++R ++++ +L +
Sbjct: 247 AVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 364 YVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00069
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 239 (89.2 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 61/204 (29%), Positives = 104/204 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV++ + ++++T + YGF+E+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS +K D G ++F+G+L PDV + LL +TF +
Sbjct: 86 LNMIKLHG--KPIRVNKASQD--KKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
K++ DP+TG S+G+GF+ + + A+ M G + S R + +S A K T G +
Sbjct: 140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERH 199
Query: 205 QYAAVK---ATYPVAAYTTPVQVF 225
A + AT P A + P +F
Sbjct: 200 GTPAERLLAATNPTAQKSRPHTLF 223
Score = 135 (52.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 208 AVKATYPVAAYTTPVQVFPADNDITN----TTIFVGNLDPNVTEEELKQTFLHFGEIV-N 262
A+K + + P++V A D + +F+GNLDP+V E+ L TF FG I N
Sbjct: 82 AIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASN 141
Query: 263 VKI---P-MG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
KI P G RG GF+ + + +++ AI M G + +Q+ +S+ K+D G
Sbjct: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKG 196
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 247 (92.0 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 76/292 (26%), Positives = 146/292 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA++ +
Sbjct: 138 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAADKAI 195
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 196 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 253
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ DP+ G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 254 FGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ-KKV- 310
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 311 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 360
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 361 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 412
Score = 190 (71.9 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 54/208 (25%), Positives = 104/208 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F+ G+ +S+K++R+ +G+ +G+GFV + H A +
Sbjct: 228 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANK 286
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NG + G E+ L + ++R ++++ +L +
Sbjct: 287 AVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 346
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 347 DEKLRKEF-SPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 403
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 404 YVALAQRKEERKAHLTNQYMQRVAGMRA 431
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETF 137
AER L T N + G + R+ W+ ++ G ++F+ +L + + L +TF
Sbjct: 105 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 159
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
S + ++ KVV D N G SKGY FV F + ++A+ +MNG+ + R + + +
Sbjct: 160 -SAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 216
Query: 198 K 198
K
Sbjct: 217 K 217
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 246 (91.7 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 76/292 (26%), Positives = 146/292 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAADKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ DP+ G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 214 FGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 199 (75.1 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 54/174 (31%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F + ++A+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 190 (71.9 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 54/193 (27%), Positives = 99/193 (51%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--- 92
DEN L F+ G+ +S+K++R+ +G+ +G+GFV + H A + ++ NG + G
Sbjct: 204 DEN-LKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 93 --------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + ++R ++++ +L + D L++ F S + S+
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF-SPFGSI 320
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK------ 198
AKV+ + GRSKG+GFV F E +A+TEMNG ++P+ ++ A K+
Sbjct: 321 TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 378
Query: 199 TTGFQQQYAAVKA 211
T + Q+ A ++A
Sbjct: 379 TNQYMQRVAGMRA 391
Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00069
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 246 (91.7 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 78/294 (26%), Positives = 145/294 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F S+
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIF-SK 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
Y + +V+TD N G+S+G+GFV F + RA+ EMNG + + + + A K +
Sbjct: 214 YGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K T Q ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-----MTRYQ---------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 207 (77.9 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 196 (74.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 59/208 (28%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D++ L F+ G +SI+++ ++ G+ G+GFV F H A+R
Sbjct: 188 KEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQR 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG M G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ D GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 119 (46.9 bits), Expect = 0.00054, P = 0.00054
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F S ++ +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKF-SPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 245 (91.3 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 77/294 (26%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 34 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 91
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F
Sbjct: 92 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 150
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 151 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 208
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 209 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 254
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 255 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 308
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 124 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 182
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 183 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 242
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 243 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 299
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 300 YVALAQRKEERQAHLTNQYMQRMASVRA 327
Score = 128 (50.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 38/121 (31%), Positives = 61/121 (50%)
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETF 137
AER L T N + G + R+ W+ ++ G +IF+ +L + + L +TF
Sbjct: 1 AERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF 55
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
S + ++ KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +
Sbjct: 56 -SAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 112
Query: 198 K 198
K
Sbjct: 113 K 113
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 244 (91.0 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 63/197 (31%), Positives = 107/197 (54%)
Query: 115 PEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERN 173
PE IFVGDL+ ++ L++ F + + + +VV DP T +SKGYGFV F+ ++E
Sbjct: 93 PEQFHIFVGDLSAEIETQQLKDAF-TPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAE 151
Query: 174 RAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITN 233
A+T MNG + +R +R + AT K A KA T +V+ + TN
Sbjct: 152 TAITAMNGQWLGSRSIRTNWATRKPP--------ATKADMNAKPLTFD-EVYNQSSP-TN 201
Query: 234 TTIFVGNLDPNVT----EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM 289
T++ G ++ ++ EE L++TF +G I +++ +G FV+F+ + +A AI+ +
Sbjct: 202 CTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAV 261
Query: 290 QGHMIGQQQVRISWGRK 306
I QQ V+ +WG++
Sbjct: 262 NNTEINQQPVKCAWGKE 278
Score = 135 (52.6 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 41/180 (22%), Positives = 82/180 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++GDL + L F GE+ +++R+ T + +GYGFV FV + AE +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 86 NGTPMPGTEQNFRLNWAS--------------FGIGEKRPDAGPEH-SIFVGDLAPDVTD 130
NG + G+ ++ R NWA+ E + P + +++ G + ++
Sbjct: 158 NGQWL-GS-RSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSG 215
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
+L +E + + S G + + + KGY FV+F + A+ +N + +P++
Sbjct: 216 FLNEEILQKTF-SPYGT--IQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK 272
Score = 132 (51.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKI---PM---GRGCGFVQFAARASAEEAILRM 289
IFVG+L + ++LK F FGEI + ++ P +G GFV F ++ AE AI M
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 290 QGHMIGQQQVRISWG-RKQDVT 310
G +G + +R +W RK T
Sbjct: 158 NGQWLGSRSIRTNWATRKPPAT 179
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 245 (91.3 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 77/294 (26%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 245 (91.3 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 77/294 (26%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 181 (68.8 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 50/189 (26%), Positives = 92/189 (48%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + A ER L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 103 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTFAA-FGNI 156
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 157 LSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 213
Query: 205 QYAAVKATY 213
++ +KA +
Sbjct: 214 KFEEMKANF 222
Score = 152 (58.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 56/246 (22%), Positives = 112/246 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D L FA G ++S K+ +++ G +GYGFV + + AA ++
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH------SIFVGDLAPDVTDYLLQETFRS 139
NG + N + + I +K + E +I++ ++ P+V D ++ F
Sbjct: 191 NGMLL-----NDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFE- 244
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
++ + A + D + G+S+G+GFV F A+ EMN ++ + + A K
Sbjct: 245 KFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKK-- 301
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
++ ++ Y AA + N ++V NL +V +++L++ F +G
Sbjct: 302 ---HEREEELRKQYE-AARMEKASKYQGVN------LYVKNLTDDVDDDKLRELFGPYGT 351
Query: 260 IVNVKI 265
I + K+
Sbjct: 352 ITSAKV 357
Score = 115 (45.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILR 288
T I++ N+DP V +EE ++ F FGEI + + RG GFV F+ SA+ A+
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEE 282
Query: 289 MQGHMIGQQQVRISWGRKQ 307
M + Q++ + GR Q
Sbjct: 283 MNDKEVRSQKLYV--GRAQ 299
Score = 71 (30.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 209 VKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG 268
++ T PV T + + N N G +P E+E ++ E K P+G
Sbjct: 358 MRDTAPVETATPESETKESANK-ENEKAAEGEKEPAAEEKEKEEK--KEAEQKPEKKPLG 414
Query: 269 R--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGS 312
+ G GFV F++ A +A+ M M+ + + ++ +++DV S
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 460
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 244 (91.0 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 76/294 (25%), Positives = 143/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
NG + + F + S E A + ++++ + D+ D L+E F Q
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWF-GQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
Y + KV+TD + G+S+G+GFV F + +A+ +MNG + + + + A K +
Sbjct: 214 YGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFTPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 SITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Score = 185 (70.2 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 59/219 (26%), Positives = 103/219 (47%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ + G+ G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F + + S+ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-TPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKATYPVA-AYTTP 221
++ A K+ T + Q+ A+V+ PV Y P
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPP 402
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 232 (86.7 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 58/190 (30%), Positives = 97/190 (51%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
EE R L++G+L Y + LS F G VV ++I+ +K+T + G+GFV S A+
Sbjct: 114 EEGR-LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIG------------EKRPDAGPEHSIFVGDLAPDV 128
+Q +N + + G + ++N+ G R H ++ G+L ++
Sbjct: 173 AMQMFNSSQIGG--RTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T L++ F Q P V GAKV+ + NTGRS+G+GF+ F A+ MNGV R
Sbjct: 231 TSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRA 289
Query: 189 MRISAATPKK 198
+R++ A+ ++
Sbjct: 290 LRLNLASERE 299
Score = 122 (48.0 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 46/202 (22%), Positives = 87/202 (43%)
Query: 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
+G E ++VG+L +T L + F + +V ++V D T RS+G+GFV E
Sbjct: 112 SGEEGRLYVGNLPYTITSSELSQIF-GEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 173 NRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDIT 232
AM N R ++++ P+ G + + K +Y D
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNF--PEVPRGGENEVMRTKIRDNNRSYV----------DSP 218
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEAI 286
+ ++ GNL N+T + LK F ++ K+ RG GF+ F + + + A+
Sbjct: 219 HK-VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 287 LRMQGHMIGQQQVRISWGRKQD 308
M G + + +R++ +++
Sbjct: 278 ATMNGVEVEGRALRLNLASERE 299
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 243 (90.6 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 75/292 (25%), Positives = 146/292 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAADKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ DP+ G+SKG+GFV + + N+A+ EMNG + + + + A KK
Sbjct: 214 FGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 199 (75.1 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 54/174 (31%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F + ++A+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 190 (71.9 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 54/193 (27%), Positives = 99/193 (51%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--- 92
DEN L F+ G+ +S+K++R+ +G+ +G+GFV + H A + ++ NG + G
Sbjct: 204 DEN-LKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Query: 93 --------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + ++R ++++ +L + D L++ F S + S+
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF-SPFGSI 320
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK------ 198
AKV+ + GRSKG+GFV F E +A+TEMNG ++P+ ++ A K+
Sbjct: 321 TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 378
Query: 199 TTGFQQQYAAVKA 211
T + Q+ A ++A
Sbjct: 379 TNQYMQRVAGMRA 391
Score = 118 (46.6 bits), Expect = 0.00072, P = 0.00072
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 186 (70.5 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 50/163 (30%), Positives = 83/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G Q R+ W+ G ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D + G S+G+GFV F +A+ MNG+ + R
Sbjct: 126 LSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Score = 175 (66.7 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 66/246 (26%), Positives = 119/246 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L+ D L F+ G ++S K+ ++ G G+GFV F +H AA++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE-HGS-RGFGFVHFETHEAAQQAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH----SIFVGDLAPDVTDYLLQETFR 138
T NG + + F ++ S E+ + G +I+V +L DV + LQ+ F
Sbjct: 156 NTMNGMLL-NDRKVFVGHFKSRR--EREAELGARALEFTNIYVKNLPVDVDEQGLQDLF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
SQ+ + KV+ D N+G S+ +GFV F E +A+ MNG S R + A +K
Sbjct: 212 SQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR--LLYAGRAQK 268
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
Q + +K + ++ + N ++V NLD ++ +++L++ F +G
Sbjct: 269 RVERQNE---LKRRFEQMKQDR-LRRYQGVN------LYVKNLDDSIDDDKLRKEFSPYG 318
Query: 259 EIVNVK 264
I + K
Sbjct: 319 VITSAK 324
Score = 125 (49.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFEMLKGQPIRI 84
Score = 103 (41.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
IF+ NL+ ++ + L TF FG I++ K+ RG GFV F +A++AI M G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 292 HMIGQQQV 299
++ ++V
Sbjct: 161 MLLNDRKV 168
Score = 92 (37.4 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG----C-GFVQFAARASAEEAILR 288
T I+V NL +V E+ L+ F FG++++VK+ C GFV F A++A++
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 289 MQG 291
M G
Sbjct: 251 MNG 253
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 242 (90.2 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 76/294 (25%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 53 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 110
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 111 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 169
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 170 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 227
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 228 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 273
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 274 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 327
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 143 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 201
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 202 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 261
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 262 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 318
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 319 YVALAQRKEERQAHLTNQYMQRMASVRA 346
Score = 156 (60.0 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 45/139 (32%), Positives = 70/139 (50%)
Query: 60 ITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSI 119
IT + GY +V F A AER L T N + G + R+ W+ ++ G +I
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NI 56
Query: 120 FVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179
F+ +L + + L +TF S + ++ KVV D N G SKGYGFV F + RA+ +M
Sbjct: 57 FIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKM 113
Query: 180 NGVFCSTRPMRISAATPKK 198
NG+ + R + + +K
Sbjct: 114 NGMLLNDRKVFVGRFKSRK 132
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 242 (90.2 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 76/294 (25%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 242 (90.2 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 76/294 (25%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 242 (90.2 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 76/294 (25%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 242 (90.2 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 76/294 (25%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 242 (90.2 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 76/294 (25%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 204 (76.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PD T+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 242 (90.2 bits), Expect = 7.0e-18, P = 7.0e-18
Identities = 76/294 (25%), Positives = 144/294 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 205 (77.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 56/174 (32%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 186 (70.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRA 391
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 240 (89.5 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 75/296 (25%), Positives = 148/296 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L+ D L F+ G ++S K++ + G G+GFV F +H AA+ +
Sbjct: 98 VGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD-HGS-RGFGFVHFETHEAAQNAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH----SIFVGDLAPDVTDYLLQETFR 138
+T NG + + F ++ S E+ + G +I+V +L DV + LQ+ F
Sbjct: 156 RTMNGMLL-NDRKVFVGHFKSRR--EREAELGARALEFTNIYVKNLHVDVDERCLQDLF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
SQ+ + KV+ D ++G S+G+GFV F + +A+T+MNG S R + + A +
Sbjct: 212 SQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRV 270
Query: 198 -KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
+ ++++ +K + Y ++V NLD ++ +E+L++ F
Sbjct: 271 ERQNELKRRFEQMKQDR-LTRYQ-------------GVNLYVKNLDDSIDDEKLRKEFAP 316
Query: 257 FGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+G I + K+ +G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 317 YGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 372
Score = 198 (74.8 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 53/188 (28%), Positives = 95/188 (50%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +++ +L DE L F+ G+++S+K++R+ +G G+GFV F H A++
Sbjct: 189 EFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKA 247
Query: 82 LQTYNGTPMPGT--------EQNFRLNWASFGIGEKRPDAGPEH---SIFVGDLAPDVTD 130
+ NG + G ++ R N + + D + +++V +L + D
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F + Y + AKV+T+ G SKG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-APYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 191 ISAATPKK 198
++ A K+
Sbjct: 365 VALAQRKE 372
Score = 186 (70.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 50/163 (30%), Positives = 83/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G Q R+ W+ G ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFEVIKG--QPIRIMWSQRDPGLRKSGVG---NVFIKNLEDSIDNKALYDTF-STFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KVV D + G S+G+GFV F A+ MNG+ + R
Sbjct: 126 LSCKVVCDDH-G-SRGFGFVHFETHEAAQNAIRTMNGMLLNDR 166
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFEVIKGQPIRI 84
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 240 (89.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 73/296 (24%), Positives = 149/296 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G GYGFV F +H AA R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE-HGS-RGYGFVHFETHEAANRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPE----HSIFVGDLAPDVTDYLLQETFR 138
QT NG + + F ++ S E+ + G + ++++ + D+ D L+E F
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRR--ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
S + + KV+ D ++GRS+G+GFV + + E +A++EMNG + R + + A +
Sbjct: 212 SAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 198 -KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
+ + ++++ +K ++ N ++V NLD + ++ L++ FL
Sbjct: 271 ERQSELKRKFEQIKQE----------RI----NRYQGVNLYVKNLDDGIDDDRLRKEFLP 316
Query: 257 FGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+G I + K+ +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 317 YGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
Score = 190 (71.9 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 52/163 (31%), Positives = 84/163 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L+IGDL E L F+ G ++SI++ R+ T + Y ++ F A AER L T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ G ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KVV D + G S+GYGFV F NRA+ MNG+ + R
Sbjct: 126 LSCKVVCDEH-G-SRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Score = 183 (69.5 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 56/207 (27%), Positives = 102/207 (49%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E ++I + D+ L F+ G +S+K++ + +G+ G+GFV + +H A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKA 247
Query: 82 LQTYNGTPMPGT-----------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTD 130
+ NG + G E+ L I ++R + +++V +L + D
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F Y ++ AKV+T+ G SKG+GFV F E +A+TEMNG ST+P+
Sbjct: 308 DRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRA 391
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 113 AG-PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171
AG P S+++GDL PDVT+ +L E F P + +V D T RS Y ++ F +
Sbjct: 6 AGYPLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLSYAYINFQQPAD 64
Query: 172 RNRAMTEMNGVFCSTRPMRI 191
RA+ MN RP+RI
Sbjct: 65 AERALDTMNFEVIKGRPIRI 84
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 235 (87.8 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 73/283 (25%), Positives = 136/283 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++ +L D L F+ G+V+S K+ R+ +G +GYGFV+F S + +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHS-IFVGDLAPDVTDYLLQETFRSQYPSV 144
NGT + +N ++ F + + D + ++V +L TD L+ F ++ +
Sbjct: 92 NGTLI----RNQHIHVCPF-VSRGQWDKSRVFTNVYVKNLVETATDADLKRLF-GEFGEI 145
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
A V+ D G+S+ +GFV F A+ +MNGV + + + A +KT +
Sbjct: 146 TSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ-RKTNRTED 203
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+KA + + ++ N ++V NLD +V +L++ F FG I + K
Sbjct: 204 ----LKAKFELEKIIRDMKTRKGMN------LYVKNLDDSVDNTKLEELFSEFGTITSCK 253
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302
+ + +G GFV+F+ A +A+L+M G M+G + + +S
Sbjct: 254 VMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Score = 137 (53.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 47/171 (27%), Positives = 80/171 (46%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF-- 97
L F GE+ S ++++ G+ +GFV F AA ++ NG + E +
Sbjct: 135 LKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGR 193
Query: 98 ---RLNW-----ASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQYPSVRGA 147
+ N A F + + D +++V +L V + L+E F S++ ++
Sbjct: 194 AQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELF-SEFGTITSC 252
Query: 148 KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KV+ N G SKG GFV+F E ++AM +MNG +P+ +S A K+
Sbjct: 253 KVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKE 302
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 186 (70.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 50/163 (30%), Positives = 83/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G Q R+ W+ G ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D + G S+G+GFV F +A+ MNG+ + R
Sbjct: 126 LSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 53/188 (28%), Positives = 94/188 (50%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +++ +L DE L F+ G+++S+K++R+ +G +GFV F H A++
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 82 LQTYNGTPMPGT--------EQNFRLNWASFGIGEKRPDAGPEH---SIFVGDLAPDVTD 130
+ NG + G ++ R N + + D + +++V +L + D
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F S Y + AKV+T+ G SKG+GFV F E +A+TEMNG T+P+
Sbjct: 308 DKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 191 ISAATPKK 198
++ A K+
Sbjct: 365 VALAQRKE 372
Score = 125 (49.1 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFEMLKGQPIRI 84
Score = 103 (41.3 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
IF+ NL+ ++ + L TF FG I++ K+ RG GFV F +A++AI M G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 292 HMIGQQQV 299
++ ++V
Sbjct: 161 MLLNDRKV 168
Score = 101 (40.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 19/77 (24%), Positives = 46/77 (59%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
++V NLD ++ +++L++ F +G I + K+ +G GFV F++ A +A+ M G
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 292 HMIGQQQVRISWGRKQD 308
++G + + ++ ++++
Sbjct: 356 RIVGTKPLYVALAQRKE 372
Score = 92 (37.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG----C-GFVQFAARASAEEAILR 288
T I+V NL +V E+ L+ F FG++++VK+ C GFV F A++A++
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 289 MQG 291
M G
Sbjct: 251 MNG 253
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 240 (89.5 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 69/292 (23%), Positives = 138/292 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V +++ +L+ D L F+ G ++S K+ K G +GYG+V F ++ +AE+ +
Sbjct: 273 VGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAI 330
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
+ NGT + G +N F +R E+ +F + +T +LQ+ +++
Sbjct: 331 EKVNGTLILGKP----INVERFVSKVERYKV--ENKVFFRNADESITIEILQQELSNRFG 384
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202
+ + D N G+SKG G V+F ++ + + +TE + ST I T + G
Sbjct: 385 EIESCILKNDAN-GKSKGLGLVEFKNQEDAQKILTESGALIIST----IDGTTTVSSNGG 439
Query: 203 QQQYAAVKATYPVAAYTTPVQVFPA-DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
+ T + + V+ F T+ ++F+ N+D ++ + +K+ F G I+
Sbjct: 440 TIEINGKPIT--IDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTII 497
Query: 262 NVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+KI +G GF+ F+ A++A+ + G G +Q+++S+ K +
Sbjct: 498 GIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDN 549
Score = 181 (68.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 51/178 (28%), Positives = 92/178 (51%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGE--VVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
++ +L++GDL +E L+ F+ G + SI + R+ T + GY +V F ++ AE
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
R L T N T + G + R+ W+ +++ + G +IFV +L V + +L +TF S
Sbjct: 242 RALDTLNYTLVHG--KPCRIMWSYRDPTKRKTNVG---NIFVKNLEKGVDNAMLYDTF-S 295
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ ++ KV + G SKGYG+V F + +A+ ++NG +P+ + K
Sbjct: 296 SFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSK 351
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 115 PEH---SIFVGDLAPDVTDYLLQETF-RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDEN 170
P H S++VGDLA DV + +L E F + ++ V D NT RS GY +V F + +
Sbjct: 179 PPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNH 238
Query: 171 ERNRAMTEMNGVFCSTRPMRI 191
+ RA+ +N +P RI
Sbjct: 239 DAERALDTLNYTLVHGKPCRI 259
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 238 (88.8 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 75/294 (25%), Positives = 145/294 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V +++ +L + L + G ++S ++ ++ G +GYGFV F +H AAER +
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NGS-KGYGFVHFETHEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + G + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 KKMNGMLLNGRKV-FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++ + +K + Y + N ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRTFEQMKQDR-ITRY-----------QVVN--LYVKNLDDGIDDERLRKAFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 187 (70.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAYLTNEYMQRMASVRA 391
Score = 177 (67.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI+I R+ IT Y +V F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IFV +L + + L +T S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYDTV-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
VV D N G SKGYGFV F RA+ +MNG+ + R + + +K
Sbjct: 126 LSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 232 (86.7 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 62/204 (30%), Positives = 105/204 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E+ L G VVS+ + ++++T +G+GFVEF+ A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + ++N AS EK D G +IFVG+L P+V + LL +TF + +
Sbjct: 74 LNMIKLYG--KPIKVNKAS--AHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ D ++G SKG+ F+ F + A+ MNG F R + +S A + + G +
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVF 225
AA + A P+ P QVF
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVF 211
Score = 126 (49.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 36/115 (31%), Positives = 56/115 (48%)
Query: 208 AVKATYPVAAYTTPVQVFPAD----NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IFVGNLDP V E+ L TF FG I+ V
Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV 129
Query: 264 K-----IPMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+ G +G F+ FA+ +++ A+ M G + + + +S+ K+D G
Sbjct: 130 PKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKG 184
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 232 (86.7 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 62/204 (30%), Positives = 105/204 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E+ L G VVS+ + ++++T +G+GFVEF+ A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + ++N AS EK D G +IFVG+L P+V + LL +TF + +
Sbjct: 74 LNMIKLYG--KPIKVNKAS--AHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ D ++G SKG+ F+ F + A+ MNG F R + +S A + + G +
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 205 QYAAVK---ATYPVAAYTTPVQVF 225
AA + A P+ P QVF
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVF 211
Score = 126 (49.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 36/115 (31%), Positives = 56/115 (48%)
Query: 208 AVKATYPVAAYTTPVQVFPAD----NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A+K + Y P++V A N IFVGNLDP V E+ L TF FG I+ V
Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV 129
Query: 264 K-----IPMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+ G +G F+ FA+ +++ A+ M G + + + +S+ K+D G
Sbjct: 130 PKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKG 184
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 231 (86.4 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 74/291 (25%), Positives = 138/291 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ + G +GY +V F S AAA R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NGS-KGYAYVHFDSLAAANRAI 162
Query: 83 QTYNGTPMPGTEQNF-RLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
NG + + R + E R D ++FV ++ D+ D L+E F +
Sbjct: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CE 221
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
Y KV+ D + G+SKG+GFV++ +A+ +++G + + + A K +
Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++++ ++ + + P V P I++ NLD + +E+LK+ F FG
Sbjct: 281 LAELRRRFERLR----LKEKSRPPGV-P---------IYIKNLDETINDEKLKEEFSSFG 326
Query: 259 EIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
I K+ M G+G G V F++ A +A+ M G ++G + + ++ G+
Sbjct: 327 SISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 170 (64.9 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 55/166 (33%), Positives = 81/166 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++GDL E+ L F G + +I R+ +T P GYG+V F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145
N + G + FRL W+ ++ G +IF+ +L + + L F S + ++
Sbjct: 80 NFDLING--KPFRLMWSQPDDRLRKSGVG---NIFIKNLDKSIDNRALFYLF-SAFGNIL 133
Query: 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191
KVV D N G SKGY +V F NRA+ MNGV + R + +
Sbjct: 134 SCKVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
Score = 167 (63.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 49/177 (27%), Positives = 87/177 (49%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-- 93
D+ L F G S+K+IR+ +G+ +G+GFV + +H AA++ + +G + G
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 94 ---------EQ--NFRLNWASFGIGEK-RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
E+ R + + EK RP P I++ +L + D L+E F S +
Sbjct: 270 YVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP---IYIKNLDETINDEKLKEEF-SSF 325
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
S+ AKV+ + G+ KG+G V F E +A+ EMNG ++P+ ++ ++
Sbjct: 326 GSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
Score = 122 (48.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 105 GIGEKRPDAGPEH-----SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
G GE P AG + +++VGDL PDVT+ +L + FR P +R ++ DP T
Sbjct: 2 GSGEPNP-AGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPL 59
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196
GYG+V F + A+ MN + +P R+ + P
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQP 96
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 43/155 (27%), Positives = 72/155 (46%)
Query: 158 SKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAA 217
SKGY +V F NRA+ MNGV + R + + F ++ AA T A
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK------FPEERAAEVRTRDRAT 197
Query: 218 YTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI---PMGR--GCG 272
+T +FV N+ ++ +E+LK+ F +G +VK+ G+ G G
Sbjct: 198 FTN---------------VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFG 242
Query: 273 FVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
FV++ +A++A+L + G I + + + GR Q
Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYV--GRAQ 275
Score = 39 (18.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 398 AYLSIHGNAILGRTLWL 414
A L +HG +I G+ L++
Sbjct: 255 AVLDLHGKSIDGKVLYV 271
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 215 (80.7 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 56/177 (31%), Positives = 91/177 (51%)
Query: 147 AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQY 206
A+VV D TG+SKGYGFV F ++ + A+ M G + R +R + AT K
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP------- 55
Query: 207 AAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP 266
A K+T + + N T++ G + +T++ ++QTF FG+I+ +++
Sbjct: 56 -APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 114
Query: 267 MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ-DVTGSVAAQVDPSQW 322
+G FV+F+ SA AI+ + G I V+ WG++ D+T + QVD SQW
Sbjct: 115 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ-QVDYSQW 170
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 41/170 (24%), Positives = 74/170 (43%)
Query: 54 KIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASF------GIG 107
+++++ TG+ +GYGFV F + AE + G + G + R NWA+
Sbjct: 4 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ--IRTNWATRKPPAPKSTQ 61
Query: 108 EKRP----------DAGPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
E + P++ +++ G +A +TD L+++TF S + + +V +
Sbjct: 62 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE---- 116
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI--SAATPKKTTGFQQ 204
KGY FV+F A+ +NG ++ +P T FQQ
Sbjct: 117 --KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQ 164
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 236 (88.1 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 72/294 (24%), Positives = 146/294 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I ++ D L F+ G ++S K++ ++ G +GYGFV F + AA R +
Sbjct: 98 VGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYGFVHFETQEAANRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH----SIFVGDLAPDVTDYLLQETFR 138
+T NG + + F ++ S E+ + G + ++++ + D+ L+ F
Sbjct: 156 ETMNGMLL-NDRKVFVGHFKSRK--EREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+++ V+TD GRS+G+GFV F++ + RA+TEMNG + R + + A +
Sbjct: 212 TEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKR- 269
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++Q +K + +Q + N ++V NLD ++ +E+L++ F +G
Sbjct: 270 ---LERQ-GELKRKFEQIKQER-IQRYQGVN------LYVKNLDDSIDDEKLRKEFAPYG 318
Query: 259 EIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ RG GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
Score = 210 (79.0 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G+++SI++ R+ IT + GY ++ F A AE L T
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ G ++ G +IF+ ++ + + L +TF S + ++
Sbjct: 72 MNYEVIKG--RPIRIMWSQRDPGLRKSGVG---NIFIKNMDESIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N G SKGYGFV F + NRA+ MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEM 183
Query: 205 QYAAVKAT 212
AV+ T
Sbjct: 184 GAKAVEFT 191
Score = 195 (73.7 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 62/219 (28%), Positives = 106/219 (48%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E ++I + D L + F G+ +S+ ++ ++ G+ G+GFV FV+H A R
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRA 247
Query: 82 LQTYNGTPMPGT-----------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTD 130
+ NG + G E+ L I ++R +++V +L + D
Sbjct: 248 VTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F + Y ++ AKV+TD G S+G+GFV F E +A+TEMNG ST+P+
Sbjct: 308 EKLRKEF-APYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKATYPVAAYTTPVQ 223
++ A K+ T + Q+ A+++A P A T Q
Sbjct: 365 VALAQRKEERKAILTNQYIQRLASIRAI-PGPAIPTTYQ 402
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 230 (86.0 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 73/291 (25%), Positives = 141/291 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
+ ++I +L D L F+ G ++S K++ + G +GY +V F S AAA R +
Sbjct: 105 IGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD-NGS-KGYAYVHFDSLAAANRAI 162
Query: 83 QTYNGTPMPGTEQNF-RLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
NG + + R + E R D ++FV + D+ D L+E F S+
Sbjct: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELF-SE 221
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
Y KV+ D ++G+SKG+GFV++ +A+ +++G + + + A K +
Sbjct: 222 YGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++++ ++ + + P V P I++ NLD + +E+LK+ F FG
Sbjct: 281 LAELRRRFERLR----LKEKSRPPGV-P---------IYIKNLDETIDDEKLKEEFSSFG 326
Query: 259 EI----VNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
I V V++ G+G G + F++ A +A+ M G ++G + ++++ G+
Sbjct: 327 SISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 174 (66.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 66/206 (32%), Positives = 95/206 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++GDL E+ L F G + +I R+ +T P GYG+V F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145
N + G + FRL W+ ++ G +IF+ +L + + L F S + S+
Sbjct: 80 NFDLING--KPFRLMWSQPDDRLRKSGIG---NIFIKNLDKSIDNRALFYLF-SAFGSIL 133
Query: 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ 205
KVV D N G SKGY +V F NRA+ MNGV + R + + F ++
Sbjct: 134 SCKVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK------FPEE 185
Query: 206 YAAVKATYPVAAYTTP-VQVFPADND 230
AA T A +T V+ F D D
Sbjct: 186 RAAEVRTRDKATFTNVFVKNFGDDMD 211
Score = 170 (64.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 48/177 (27%), Positives = 90/177 (50%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-- 93
D++ L F+ G S+K+IR+ +G+ +G+GFV + +H AA++ + +G + G
Sbjct: 211 DDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 94 ---------EQ--NFRLNWASFGIGEK-RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
E+ R + + EK RP P I++ +L + D L+E F S +
Sbjct: 270 YVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP---IYIKNLDETIDDEKLKEEF-SSF 325
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
S+ AKV+ + G+ KG+G + F E +A+ EMNG ++P++++ ++
Sbjct: 326 GSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQARR 380
Score = 122 (48.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 105 GIGEKRPDAGPEH-----SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
G GE P AG + +++VGDL PDVT+ +L + FR P +R ++ DP T
Sbjct: 2 GSGEPNP-AGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPL 59
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196
GYG+V F + A+ MN + +P R+ + P
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQP 96
Score = 39 (18.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 398 AYLSIHGNAILGRTLWL 414
A L +HG +I G+ L++
Sbjct: 255 AVLDLHGKSIDGKVLYV 271
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 235 (87.8 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 75/292 (25%), Positives = 144/292 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA + +
Sbjct: 27 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAANKAI 84
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 85 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 142
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ D + G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 143 FGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ-KKV- 199
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 200 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 249
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 250 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 301
Score = 193 (73.0 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 55/193 (28%), Positives = 99/193 (51%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--- 92
DEN L F+ G+ +S+K++R+ +G+ +G+GFV + H A + ++ NG M G
Sbjct: 133 DEN-LRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 190
Query: 93 --------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + ++R ++++ +L + D L++ F S + S+
Sbjct: 191 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF-SPFGSI 249
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK------ 198
AKV+ + GRSKG+GFV F E +A+TEMNG ++P+ ++ A K+
Sbjct: 250 TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 307
Query: 199 TTGFQQQYAAVKA 211
T + Q+ A ++A
Sbjct: 308 TNQYMQRVAGMRA 320
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 235 (87.8 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 73/294 (24%), Positives = 146/294 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G+++S K++ ++ + GYGFV F + AA R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPE----HSIFVGDLAPDVTDYLLQETFR 138
QT NG + + F ++ S E+ + G + ++++ + D+ D L+E F
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRR--ERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
S + + KV+ D N+GRS+G+GFV + + E +A+TEMNG + R + + A +
Sbjct: 212 SAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR- 269
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++Q +K + ++ N ++V NLD + ++ L++ F +G
Sbjct: 270 ---IERQ-GELKRKFEQIKQE---RI----NRYQGVNLYVKNLDDGIDDDRLRKEFSPYG 318
Query: 259 EIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
Score = 195 (73.7 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 53/163 (32%), Positives = 84/163 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L+IGDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ G ++ G ++F+ +L + + L +TF S + +
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTF-SAFGDI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KVV D G S+GYGFV F + NRA+ MNG+ + R
Sbjct: 126 LSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 186 (70.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 62/239 (25%), Positives = 113/239 (47%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E ++I + D+ L F+ G +S+K++ + +G+ G+GFV + +H A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 82 LQTYNGTPMPGT-----------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTD 130
+ NG + G E+ L I ++R + +++V +L + D
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F S Y ++ KV+T+ G SKG+GFV F E +A+TEMNG ST+P+
Sbjct: 308 DRLRKEF-SPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKATY-PV-AAYTTPVQVF-PADNDITNTTIFVGN 240
++ A K+ T + Q+ A ++A P+ ++ P F P +N + N
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPN 423
Score = 127 (49.8 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S+++GDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN RP+RI
Sbjct: 68 ALDTMNFEVIKGRPIRI 84
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 235 (87.8 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 75/292 (25%), Positives = 144/292 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAANKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ D + G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 214 FGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 204 (76.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 55/174 (31%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F + N+A+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 193 (73.0 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 55/193 (28%), Positives = 99/193 (51%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--- 92
DEN L F+ G+ +S+K++R+ +G+ +G+GFV + H A + ++ NG M G
Sbjct: 204 DEN-LRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 93 --------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + ++R ++++ +L + D L++ F S + S+
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF-SPFGSI 320
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK------ 198
AKV+ + GRSKG+GFV F E +A+TEMNG ++P+ ++ A K+
Sbjct: 321 TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 378
Query: 199 TTGFQQQYAAVKA 211
T + Q+ A ++A
Sbjct: 379 TNQYMQRVAGMRA 391
Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00069
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 213 (80.0 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +TL++G+L E + F+ G + K+I + P Y FVEF H A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAA 61
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPDVTD 130
L NG + G E ++NWA+ +K+ + +H +FVGDL+P++T
Sbjct: 62 ALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R +R
Sbjct: 120 EDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 191 ISAATPK 197
+ AT K
Sbjct: 179 TNWATRK 185
Score = 181 (68.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 56/202 (27%), Positives = 98/202 (48%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171
D P+ +++VG+L+ DVT+ L+ + F SQ + K++ D T + Y FV+F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLF-SQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 172 RNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDI 231
A+ MNG + ++++ AT T Q++ T+ V
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQKKD------------TSSSTVVSTQRSQ 103
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEA 285
+ +FVG+L P +T E++K F FG I + ++ +G GFV F + AE A
Sbjct: 104 DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163
Query: 286 ILRMQGHMIGQQQVRISWGRKQ 307
I +M G +G +Q+R +W ++
Sbjct: 164 IQQMGGQWLGGRQIRTNWATRK 185
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 235 (87.8 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 75/292 (25%), Positives = 144/292 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +GY FV F + AA + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGYAFVHFETQEAANKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ KV+ D + G+SKG+GFV + + N+A+ EMNG S + + + A KK
Sbjct: 214 FGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ-KKV- 270
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
++ A +K + + + N +++ NLD + +E+L++ F FG I
Sbjct: 271 ---ERQAELKRKFEQLKQER-ISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSI 320
Query: 261 VNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + GR G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 321 TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 204 (76.9 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 55/174 (31%), Positives = 90/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKGY FV F + N+A+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 193 (73.0 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 55/193 (28%), Positives = 99/193 (51%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--- 92
DEN L F+ G+ +S+K++R+ +G+ +G+GFV + H A + ++ NG M G
Sbjct: 204 DEN-LRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 93 --------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + ++R ++++ +L + D L++ F S + S+
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF-SPFGSI 320
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK------ 198
AKV+ + GRSKG+GFV F E +A+TEMNG ++P+ ++ A K+
Sbjct: 321 TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 378
Query: 199 TTGFQQQYAAVKA 211
T + Q+ A ++A
Sbjct: 379 TNQYMQRVAGMRA 391
Score = 118 (46.6 bits), Expect = 0.00074, P = 0.00074
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 233 (87.1 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 57/189 (30%), Positives = 99/189 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL+ E +L F+ G V SI++ R+ IT GY +V F H A + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N TP+ G + R+ W+ ++ +G +IF+ +L PD+ + L +TF S + +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDI 152
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+K+ TD N G+SKG+GFV F +E A+ +NG+ + + + ++ +K
Sbjct: 153 LSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER--DS 209
Query: 205 QYAAVKATY 213
Q KA Y
Sbjct: 210 QLEETKAHY 218
Score = 198 (74.8 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 74/302 (24%), Positives = 135/302 (44%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D L F+ G+++S KI ++ G+ +G+GFV F AA+ +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPE----H--SIFVGDLAPDVTDYLLQETFRS 139
NG + G E + + + K D+ E H +++V ++ + TD QE F
Sbjct: 187 NGMLLNGQEI-----YVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAK 241
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
P V A + D + G+ KG+GFV + + +A+ +N + + + A K
Sbjct: 242 FGPIV-SASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN- 298
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
++ +K Y AY +FV NLD +V +E+L++ F +G
Sbjct: 299 ----ERMHVLKKQYE--AYRLEKMA-----KYQGVNLFVKNLDDSVDDEKLEEEFAPYGT 347
Query: 260 IVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVA 314
I + K+ +G GFV F+ A +AI ++ + + ++ +++DV S
Sbjct: 348 ITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 407
Query: 315 AQ 316
AQ
Sbjct: 408 AQ 409
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 177 (67.4 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI+I R+ IT Y +V F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IFV +L + + L +T S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYDTV-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
VV D N G SKGYGFV F RA+ +MNG+ + R + + +K
Sbjct: 126 LSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Score = 161 (61.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 46/161 (28%), Positives = 83/161 (51%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V +++ +L + L + G ++S ++ ++ G +GYGFV F +H AAER +
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NGS-KGYGFVHFETHEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + G + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 KKMNGMLLNGRKV-FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
P++ KV+TD +G+SKG+GFV F + +A+ EMNG
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 111 (44.1 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + ++ D T S Y +V F +
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
Score = 96 (38.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
IFV NLD ++ + L T FG I++ + +G GFV F +AE AI +M G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 292 HMIGQQQV 299
++ ++V
Sbjct: 161 MLLNGRKV 168
Score = 78 (32.5 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQ 290
+++ N ++ +E LK F FG ++VK+ +G GFV F A++A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 291 G 291
G
Sbjct: 253 G 253
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 233 (87.1 bits), Expect = 7.8e-17, P = 7.8e-17
Identities = 75/296 (25%), Positives = 146/296 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L+ D L F+ G ++S K++ ++ G G+GFV F +H AA+ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE-HGS-RGFGFVHFETHEAAQNAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH----SIFVGDLAPDVTDYLLQETFR 138
T NG + + F ++ S E+ + G +I+V +L DV + LQ+ F
Sbjct: 156 STMNGMLL-NDRKVFVGHFKSRR--EREVELGARAMEFTNIYVKNLHVDVDEQRLQDLF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
SQ+ + KV+ D ++G S+G+GFV F E +A+ MNG S R + + A +
Sbjct: 212 SQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRV 270
Query: 198 -KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
+ ++++ +K + Y ++V NLD ++ +E+L++ F
Sbjct: 271 ERQNELKRRFEQMKQDR-LTRYQ-------------GVNLYVKNLDDSIDDEKLRKEFSP 316
Query: 257 FGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+G I + K+ +G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 317 YGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 372
Score = 203 (76.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 62/226 (27%), Positives = 111/226 (49%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +++ +L DE L F+ G+++S+K++R+ +G G+GFV F H A++
Sbjct: 189 EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKA 247
Query: 82 LQTYNGTPMPGT--------EQNFRLNWASFGIGEKRPDAGPEH---SIFVGDLAPDVTD 130
+ NG + G ++ R N + + D + +++V +L + D
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F S Y + AKV+T+ G SKG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKATY-PV-AAYTTPVQVF-PA 227
++ A K+ T + Q+ + ++A P+ ++ P F PA
Sbjct: 365 VALAQRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPA 410
Score = 189 (71.6 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 51/163 (31%), Positives = 84/163 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G Q R+ W+ G ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFEVIKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KVV D + G S+G+GFV F A++ MNG+ + R
Sbjct: 126 LSCKVVCDEH-G-SRGFGFVHFETHEAAQNAISTMNGMLLNDR 166
Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFEVIKGQPIRI 84
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 225 (84.3 bits), Expect = 8.9e-17, P = 8.9e-17
Identities = 79/270 (29%), Positives = 123/270 (45%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 95 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT 195
SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Query: 196 -PKKTTG---FQQQYAAVKATYP--VAAYTTPVQVFPADND-ITNTT------------- 235
P + T Q Y + YP +A + P D +T+
Sbjct: 205 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWC 264
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKI 265
IFV NL P+ E L Q F FG + NVK+
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKV 294
Score = 123 (48.4 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 265 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG R +++S T K
Sbjct: 324 LNGYRLGDRVLQVSFKTNK 342
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 227 (85.0 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 84/277 (30%), Positives = 129/277 (46%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV +V AE
Sbjct: 63 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 122
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 123 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 173
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF--CSTRPMRISAAT 195
SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 174 -SQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFAN 232
Query: 196 -PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
P + T Q Y + YP A Q F DN + N V + P +T + +
Sbjct: 233 NPSQKTNQAILSQLYHSPNRRYP-APLAQQAQRFRLDN-LLNMAYGVKSRFPPMTIDGM- 289
Query: 252 QTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAIL 287
T L G +N+ G G C FV A A+E+IL
Sbjct: 290 -TSLA-G--INIPGHAGTGWCIFVYNLA-PDADESIL 321
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
AG IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E
Sbjct: 301 AGTGWCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 359
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ +NG R +++S T K
Sbjct: 360 AMAIASLNGYRLGDRVLQVSFKTNK 384
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 231 (86.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 74/296 (25%), Positives = 144/296 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G G+GFV F + AA R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE-NGS-RGHGFVHFETQEAATRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH----SIFVGDLAPDVTDYLLQETFR 138
QT NG + + F ++ S E+ + G ++++ + D+ D L+E F
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRK--EREAEFGARAMEFTNVYIKNFGDDMDDNRLREIF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
S++ KV+ D +TGRSKG+GFV F E +A+ +MNG + R + + A +
Sbjct: 212 SRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRL 270
Query: 198 -KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
+ + ++++ +K V+ Y ++V NLD + +E L++ F
Sbjct: 271 ERQSELKRKFEQMKQER-VSRYQ-------------GVNLYVKNLDDGIDDERLRKEFSP 316
Query: 257 FGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+G I + K+ +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 317 YGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
Score = 202 (76.2 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 57/193 (29%), Positives = 99/193 (51%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-- 93
D+N L F+ G+ +S+K++ + TG+ +G+GFV F H A++ + NG + G
Sbjct: 203 DDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Query: 94 ---------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + ++R +++V +L + D L++ F S Y ++
Sbjct: 262 YVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEF-SPYGTI 320
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK------ 198
AKV+T+ G SKG+GFV F E +A+TEMNG ST+P+ ++ A K+
Sbjct: 321 TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAIL 378
Query: 199 TTGFQQQYAAVKA 211
T + Q+ A ++A
Sbjct: 379 TNQYMQRLATMRA 391
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 51/174 (29%), Positives = 89/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ + + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ G ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFEVIKG--RPVRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G S+G+GFV F + RA+ MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRK 177
Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D + RS GY ++ F + R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVASRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN RP+RI
Sbjct: 68 ALDTMNFEVIKGRPVRI 84
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 179 (68.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 49/163 (30%), Positives = 82/163 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E L I L + + S F GE+ S K++R+K+TGQ GYGFV +V A R
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRP--DAGPEHSIFVGDLAPDVTDYLLQETFR 138
+ ++NG RL + + RP D +++V + +T + L+ FR
Sbjct: 99 AVSSFNG---------LRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFR 149
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
+ + +++++D TG SKG GFV+F ++E + A+ +NG
Sbjct: 150 P-FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 110 (43.8 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ QE RS + S+ K+V D TG+S GYGFV ++ E + RA++ NG+ +
Sbjct: 53 MTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKT 112
Query: 189 MRISAATP 196
+++S A P
Sbjct: 113 IKVSYARP 120
Score = 93 (37.8 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 32/113 (28%), Positives = 50/113 (44%)
Query: 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQT 253
A+P T G Q A + A ++A + V +D +FV NL + + L Q
Sbjct: 337 ASPPATNG---QVAGLAAHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQL 393
Query: 254 FLHFGEIVNVKI-----PMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301
F FG IVNVKI +G FV + A A+L + G + + +++
Sbjct: 394 FSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 91 (37.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99
L S F G++++ +I+ + +TG +G GFV F A+ ++T NG+ G + +
Sbjct: 144 LESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITV 203
Query: 100 NWAS 103
+A+
Sbjct: 204 KFAN 207
Score = 88 (36.0 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
P+++ I + ++V + ++T EL+ F FG+I+ +I + +G GFV+F +
Sbjct: 120 PSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKK 179
Query: 280 ASAEEAILRMQG 291
A+ AI + G
Sbjct: 180 DEADVAIKTLNG 191
Score = 45 (20.9 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 398 AYLSIHGNAILGRTLWLKTSSLTP 421
A LS++G + G+TL + S TP
Sbjct: 430 AMLSLNGTNLAGKTLQVVFKSSTP 453
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 175 (66.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ S F G++ S K++R+KITGQ GYGFV + A++ + T NG + +
Sbjct: 52 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ--TKT 109
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A R DA +++V L ++ +++ F SQY + ++++ D TG
Sbjct: 110 IKVSYARPSSASIR-DA----NLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTG 163
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGV--FCSTRPMRISAAT-PKKTTG 201
S+G GF++F E A+ +NG + P+ + A P + TG
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
Score = 122 (48.0 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ Q+ F+S + S+ K+V D TG+S GYGFV + D N+ ++A+ +NG+ T+
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
Query: 189 MRISAATPKKTT 200
+++S A P +
Sbjct: 110 IKVSYARPSSAS 121
Score = 121 (47.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
G+G AG IFV +L+P+ + +L + F + +V KV+ D T + KG+GFV
Sbjct: 272 GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFV 330
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+ +E A+ +NG R +++S T K+
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 101 (40.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
P+ I + ++V L ++++E++Q F +G I+ +I + RG GF++F R
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 280 ASAEEAILRMQG 291
AEEAI + G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 93 (37.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IFV NL P E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 290 QGHMIGQQQVRISW 303
G+ +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 88 (36.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + + F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPLGAAEPITVKFAN 204
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 175 (66.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ S F G++ S K++R+KITGQ GYGFV + A++ + T NG + +
Sbjct: 52 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ--TKT 109
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A R DA +++V L ++ +++ F SQY + ++++ D TG
Sbjct: 110 IKVSYARPSSASIR-DA----NLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTG 163
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGV--FCSTRPMRISAAT-PKKTTG 201
S+G GF++F E A+ +NG + P+ + A P + TG
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
Score = 122 (48.0 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ Q+ F+S + S+ K+V D TG+S GYGFV + D N+ ++A+ +NG+ T+
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
Query: 189 MRISAATPKKTT 200
+++S A P +
Sbjct: 110 IKVSYARPSSAS 121
Score = 121 (47.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
G+G AG IFV +L+P+ + +L + F + +V KV+ D T + KG+GFV
Sbjct: 272 GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFV 330
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+ +E A+ +NG R +++S T K+
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 101 (40.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
P+ I + ++V L ++++E++Q F +G I+ +I + RG GF++F R
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 280 ASAEEAILRMQG 291
AEEAI + G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 93 (37.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IFV NL P E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 290 QGHMIGQQQVRISW 303
G+ +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 88 (36.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + + F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPLGAAEPITVKFAN 204
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 175 (66.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ S F G++ S K++R+KITGQ GYGFV + A++ + T NG + +
Sbjct: 52 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ--TKT 109
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A R DA +++V L ++ +++ F SQY + ++++ D TG
Sbjct: 110 IKVSYARPSSASIR-DA----NLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQATG 163
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGV--FCSTRPMRISAAT-PKKTTG 201
S+G GF++F E A+ +NG + P+ + A P + TG
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
Score = 122 (48.0 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ Q+ F+S + S+ K+V D TG+S GYGFV + D N+ ++A+ +NG+ T+
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
Query: 189 MRISAATPKKTT 200
+++S A P +
Sbjct: 110 IKVSYARPSSAS 121
Score = 121 (47.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
G+G AG IFV +L+P+ + +L + F + +V KV+ D T + KG+GFV
Sbjct: 272 GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFV 330
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+ +E A+ +NG R +++S T K+
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 101 (40.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAAR 279
P+ I + ++V L ++++E++Q F +G I+ +I + RG GF++F R
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKR 176
Query: 280 ASAEEAILRMQG 291
AEEAI + G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 93 (37.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IFV NL P E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 290 QGHMIGQQQVRISW 303
G+ +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 85 (35.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + + F+ G +++ +I+ ++ TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPLGAAEPITVKFAN 204
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 175 (66.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ S F G++ S K++R+KITGQ GYGFV + A++ + T NG + +
Sbjct: 52 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ--TKT 109
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A R DA +++V L ++ +++ F SQY + ++++ D TG
Sbjct: 110 IKVSYARPSSASIR-DA----NLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQATG 163
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGV--FCSTRPMRISAAT-PKKTTG 201
S+G GF++F E A+ +NG + P+ + A P + TG
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
Score = 122 (48.0 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ Q+ F+S + S+ K+V D TG+S GYGFV + D N+ ++A+ +NG+ T+
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
Query: 189 MRISAATPKKTT 200
+++S A P +
Sbjct: 110 IKVSYARPSSAS 121
Score = 121 (47.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
G+G AG IFV +L+P+ + +L + F + +V KV+ D T + KG+GFV
Sbjct: 272 GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFV 330
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+ +E A+ +NG R +++S T K+
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 101 (40.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAAR 279
P+ I + ++V L ++++E++Q F +G I+ +I + RG GF++F R
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKR 176
Query: 280 ASAEEAILRMQG 291
AEEAI + G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 93 (37.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IFV NL P E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 290 QGHMIGQQQVRISW 303
G+ +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 85 (35.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + + F+ G +++ +I+ ++ TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPLGAAEPITVKFAN 204
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 175 (66.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ S F G++ S K++R+KITGQ GYGFV + A++ + T NG + +
Sbjct: 52 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ--TKT 109
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A R DA +++V L ++ +++ F SQY + ++++ D TG
Sbjct: 110 IKVSYARPSSASIR-DA----NLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTG 163
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGV--FCSTRPMRISAAT-PKKTTG 201
S+G GF++F E A+ +NG + P+ + A P + TG
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
Score = 122 (48.0 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ Q+ F+S + S+ K+V D TG+S GYGFV + D N+ ++A+ +NG+ T+
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
Query: 189 MRISAATPKKTT 200
+++S A P +
Sbjct: 110 IKVSYARPSSAS 121
Score = 117 (46.2 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
G+G R G IFV +L+P+ + +L + F + +V KV+ D T + KG+GFV
Sbjct: 273 GVGPVR-GCGGGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFV 330
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+ +E A+ +NG R +++S T K+
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 101 (40.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
P+ I + ++V L ++++E++Q F +G I+ +I + RG GF++F R
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 280 ASAEEAILRMQG 291
AEEAI + G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 93 (37.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IFV NL P E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 290 QGHMIGQQQVRISW 303
G+ +G++ +++S+
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 88 (36.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + + F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPLGAAEPITVKFAN 204
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 175 (66.7 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ S F G++ S K++R+KITGQ GYGFV + A++ + T NG + +
Sbjct: 52 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ--TKT 109
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A R DA +++V L ++ +++ F SQY + ++++ D TG
Sbjct: 110 IKVSYARPSSASIR-DA----NLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTG 163
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGV--FCSTRPMRISAAT-PKKTTG 201
S+G GF++F E A+ +NG + P+ + A P + TG
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
Score = 122 (48.0 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ Q+ F+S + S+ K+V D TG+S GYGFV + D N+ ++A+ +NG+ T+
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
Query: 189 MRISAATPKKTT 200
+++S A P +
Sbjct: 110 IKVSYARPSSAS 121
Score = 121 (47.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
G+G AG IFV +L+P+ + +L + F + +V KV+ D T + KG+GFV
Sbjct: 273 GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFV 331
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+ +E A+ +NG R +++S T K+
Sbjct: 332 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 365
Score = 101 (40.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
P+ I + ++V L ++++E++Q F +G I+ +I + RG GF++F R
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 280 ASAEEAILRMQG 291
AEEAI + G
Sbjct: 177 IEAEEAIKGLNG 188
Score = 93 (37.8 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IFV NL P E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 290 QGHMIGQQQVRISW 303
G+ +G++ +++S+
Sbjct: 347 NGYRLGERVLQVSF 360
Score = 88 (36.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + + F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPLGAAEPITVKFAN 204
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 224 (83.9 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 75/291 (25%), Positives = 138/291 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ + G +GY +V F S AAA R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NGS-KGYAYVHFDSLAAANRAI 162
Query: 83 QTYNGTPMPGTEQNF-RLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
NG + + R + E R D ++FV + D+ D L+E F S
Sbjct: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIF-SG 221
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
Y KV+ D + G+SKG+GFV++ +A+ +++G + + + + A K +
Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIER 280
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++++ ++ + + P V P I++ NLD + +E+LK+ F FG
Sbjct: 281 LAELRRRFERLR----LKEKSRPPGV-P---------IYIKNLDETIDDEKLKEEFSSFG 326
Query: 259 EI----VNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
I V V++ G+G G V F++ A +A+ M G +G + + ++ G+
Sbjct: 327 SISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 171 (65.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 65/206 (31%), Positives = 95/206 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++GDL E+ L F G + +I R+ +T P GYG+V F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145
N + G + FRL W+ ++ G +IF+ +L + + L F S + ++
Sbjct: 80 NFDLING--KPFRLMWSQPDDRLRKSGVG---NIFIKNLDKSIDNRALFYLF-SAFGNIL 133
Query: 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ 205
KVV D N G SKGY +V F NRA+ MNGV + R + + F ++
Sbjct: 134 SCKVVCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK------FPEE 185
Query: 206 YAAVKATYPVAAYTTP-VQVFPADND 230
AA T A +T V+ F D D
Sbjct: 186 RAAEVRTRDRATFTNVFVKNFGNDMD 211
Score = 122 (48.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 105 GIGEKRPDAGPEH-----SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
G GE P AG + +++VGDL PDVT+ +L + FR P +R ++ DP T
Sbjct: 2 GSGEPNP-AGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPL 59
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196
GYG+V F + A+ MN + +P R+ + P
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQP 96
Score = 40 (19.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 398 AYLSIHGNAILGRTLWL 414
A L +HG +I G+ L++
Sbjct: 255 AVLDLHGKSINGKVLYV 271
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 215 (80.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 73/269 (27%), Positives = 130/269 (48%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V +++ +L + L + G ++S ++ ++ G +GYGFV F +H AAER +
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NGS-KGYGFVHFETHEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + G + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 KKMNGMLLNGRKV-FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++ + +K + Y + N ++V NLD + +E L++ F FG
Sbjct: 273 QTELKRTFEQMKQDR-ITRY-----------QVVN--LYVKNLDDGIDDERLRKAFSPFG 318
Query: 259 EIVNVKIPM--GRGCGFVQFAARASAEEA 285
I + K+ M GR GF F +S EEA
Sbjct: 319 TITSAKVMMEGGRSKGF-GFVCFSSPEEA 346
Score = 177 (67.4 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI+I R+ IT Y +V F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IFV +L + + L +T S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYDTV-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
VV D N G SKGYGFV F RA+ +MNG+ + R + + +K
Sbjct: 126 LSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 41/162 (25%), Positives = 76/162 (46%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171
D L++ F S + ++ AKV+ + GRSKG+GFV F E
Sbjct: 307 DERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
Score = 111 (44.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + ++ D T S Y +V F +
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
Score = 96 (38.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
IFV NLD ++ + L T FG I++ + +G GFV F +AE AI +M G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 292 HMIGQQQV 299
++ ++V
Sbjct: 161 MLLNGRKV 168
Score = 89 (36.4 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQ 290
+++ N ++ +E LK F FG ++VK+ +G GFV F A++A+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 291 GHMIGQQQVRISWGRKQ 307
G + +Q+ + GR Q
Sbjct: 253 GKELNGKQIYV--GRAQ 267
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 228 (85.3 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 73/294 (24%), Positives = 145/294 (49%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G GYGFV F + AA R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE-HGS-RGYGFVHFETQEAANRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPE----HSIFVGDLAPDVTDYLLQETFR 138
QT NG + + F ++ S E+ + G + ++++ + D+ D L+E F
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRR--ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
S + + KV+ D +TGRS+G+GFV + + E +A++EMNG + R + + A +
Sbjct: 212 SAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR- 269
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++Q +K + ++ N ++V NLD + ++ L++ F +G
Sbjct: 270 ---IERQ-GELKRKFEQIKQE---RI----NRYQGVNLYVKNLDDGIDDDRLRKEFSPYG 318
Query: 259 EIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
Score = 200 (75.5 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 66/239 (27%), Positives = 115/239 (48%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E ++I + D+ L F+ G +S+K++ + TG+ G+GFV + +H A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKA 247
Query: 82 LQTYNGTPMPGT-----------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTD 130
+ NG + G E+ L I ++R + +++V +L + D
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F S Y ++ AKV+T+ G SKG+GFV F E +A+TEMNG ST+P+
Sbjct: 308 DRLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKATY-PV-AAYTTPVQVF-PADNDITNTTIFVGN 240
++ A K+ T + Q+ A ++A P+ ++ P F PA N T + N
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPN 423
Score = 197 (74.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 52/163 (31%), Positives = 86/163 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ G ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KVV D + G S+GYGFV F + NRA+ MNG+ + R
Sbjct: 126 LSCKVVCDEH-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 129 (50.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 32/80 (40%), Positives = 43/80 (53%)
Query: 113 AG-PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171
AG P S++VGDL PDVT+ +L E F P + +V D T RS GY ++ F +
Sbjct: 6 AGYPLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPAD 64
Query: 172 RNRAMTEMNGVFCSTRPMRI 191
RA+ MN RP+RI
Sbjct: 65 AERALDTMNFEVIKGRPIRI 84
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 225 (84.3 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 62/186 (33%), Positives = 93/186 (50%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
R L++G+L E+ L F G + +IKI+ +K + Y FVE+ A LQ
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 84 TYNGTPMPGTEQNF-RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
T NG + E N ++NWA F + D ++FVGDL +V D L+ F+ +P
Sbjct: 134 TLNGKQI---ENNIVKINWA-FQSQQSSSD--DTFNLFVGDLNVNVDDETLRNAFKD-FP 186
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK---KT 199
S V+ D TG S+GYGFV F +++ AM M G + RP+RI+ A +
Sbjct: 187 SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNN 246
Query: 200 TGFQQQ 205
+QQ+
Sbjct: 247 NNYQQR 252
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 236 IFVGNLDPNVTEEELKQTFLHF-----GEIV-NVKIPMGRGCGFVQFAARASAEEAILRM 289
+FVG+L+ NV +E L+ F F G ++ +++ RG GFV F ++ A+ A+ M
Sbjct: 164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223
Query: 290 QGHMIGQQQVRISWGRKQD 308
QG + + +RI+W K+D
Sbjct: 224 QGQDLNGRPLRINWAAKRD 242
Score = 106 (42.4 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
++ L++GDL D+ L + F +S ++ + TG GYGFV F S A+
Sbjct: 159 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 218
Query: 81 VLQTYNGTPMPGTEQNFRLNWAS 103
+ + G + G + R+NWA+
Sbjct: 219 AMDSMQGQDLNG--RPLRINWAA 239
Score = 100 (40.3 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 41/164 (25%), Positives = 68/164 (41%)
Query: 154 NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKAT- 212
N G + GF ++ N N M MN M S P + G + +
Sbjct: 254 NYGNNNRGGFRQYNSNNNNNMNMG-MN--MNMNMNMNNSRGMPPSSMGMPIGAMPLPSQG 310
Query: 213 YPVAAYTT--PVQVFP--ADNDITN-----TTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
P + T P QV P D+ I + TT ++GN+ TE +L F +FG I++
Sbjct: 311 QPQQSQTIGLPPQVNPQAVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDF 370
Query: 264 KIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
K +GC F+++ A I+ + + +R WG+++
Sbjct: 371 KHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 414
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 228 (85.3 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 74/296 (25%), Positives = 148/296 (50%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L+ D L F+ G ++S K++ + G G+GFV F +H AA++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD-HGS-RGFGFVHFETHEAAQQAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH----SIFVGDLAPDVTDYLLQETFR 138
T NG + + F ++ S E+ + G +I+V +L DV + LQ+ F
Sbjct: 156 TTMNGMLL-NDRKVFVGHFKSRR--EREVELGARAMEFTNIYVKNLHVDVDEQGLQDLF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
S++ + KV+ D ++G S+G+GFV F E +A+ +MNG S R + + A +
Sbjct: 212 SRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRV 270
Query: 198 -KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
+ + ++++ +K + Y ++V NLD ++ +E+L++ F
Sbjct: 271 ERQSELKRRFEQLKQDR-LTRYQ-------------GVNLYVKNLDDSIDDEKLRKEFSP 316
Query: 257 FGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+G I + K+ +G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 317 YGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKE 372
Score = 201 (75.8 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 58/207 (28%), Positives = 101/207 (48%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +++ +L DE L F+ G+++S+K++R+ +G G+GFV F H A++
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKA 247
Query: 82 LQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTD 130
+ NG + G E+ L + + R +++V +L + D
Sbjct: 248 VMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F S Y + AKV+T+ G SKG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ + V+A
Sbjct: 365 VALAQRKEERKAILTNQYMQRLSTVRA 391
Score = 194 (73.4 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G Q R+ W+ G ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFEVIKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KVV D + G S+G+GFV F +A+T MNG+ + R
Sbjct: 126 LSCKVVCDDH-G-SRGFGFVHFETHEAAQQAITTMNGMLLNDR 166
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFEVIKGQPIRI 84
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 59/179 (32%), Positives = 96/179 (53%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
EE + L++G+L Y D L+ F G V ++I N+ T Q G+GFV + AE+
Sbjct: 111 EEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPE-----HSIFVGDLAPDVTDYLLQE 135
++ +N + G + +N A+ G RP+ P I+VG+L DV L+
Sbjct: 170 AVEKFNSFEVNG--RRLTVNRAA-PRGS-RPERQPRVYDAAFRIYVGNLPWDVDSGRLER 225
Query: 136 TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194
F S++ V A+VV+D TGRS+G+GFV+ +ENE N A+ ++G R ++++ A
Sbjct: 226 LF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 227 (85.0 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 78/303 (25%), Positives = 144/303 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K+ + +GQ +GYGFV++ + AA+ +
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAI 190
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPE---HSIFVGDLAPDVTDYLLQETFRS 139
NG + + ++ F +R +G + +++V +L+ ++D L + F
Sbjct: 191 DKLNGMLL----NDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVF-G 245
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
++ ++ D G+SKG+GFV F + ++ RA+ +NG + + A K
Sbjct: 246 EFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKS- 303
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
++ +K + + AD + ++V NLD +VT+++L++ F FG
Sbjct: 304 ----ERETELKQKFEQSLKEA------ADKS-QGSNLYVKNLDESVTDDKLREHFAPFGT 352
Query: 260 IVNVKI---PMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQDVTGSV 313
I + K+ P G RG GFV F+ A AI M G MI + + ++ RK+D +
Sbjct: 353 ITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARL 412
Query: 314 AAQ 316
AQ
Sbjct: 413 QAQ 415
Score = 188 (71.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 48/190 (25%), Positives = 89/190 (46%)
Query: 2 ATAXXXXXXXXXXXXXMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT 61
A A + +L++GDL ++ L F G+VVS+++ R+ T
Sbjct: 23 AEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTT 82
Query: 62 GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFV 121
+ GYG+V + + A R L N + G + R+ ++ ++ G +IF+
Sbjct: 83 RRSLGYGYVNYATPQDASRALNELNFMALNG--RAIRVMYSVRDPSLRKSGVG---NIFI 137
Query: 122 GDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
+L + L ETF S + + KV DP+ G+SKGYGFV++ + A+ ++NG
Sbjct: 138 KNLDKSIDHKALHETF-SAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNG 195
Query: 182 VFCSTRPMRI 191
+ + + + +
Sbjct: 196 MLLNDKQVYV 205
Score = 178 (67.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 61/238 (25%), Positives = 106/238 (44%)
Query: 21 EEVR--TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAA 78
E+V+ +++ +L + L+ F G S I+R+ G+ +G+GFV F + A
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDA 277
Query: 79 ERVLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPD 127
R + NG +E+ L ++ D +++V +L
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query: 128 VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
VTD L+E F + + ++ KV+ DP+ G S+G GFV F E RA+TEMNG T+
Sbjct: 338 VTDDKLREHF-APFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAITEMNGKMIVTK 395
Query: 188 PMRISAATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDP 243
P+ ++ A K + Q Q++ ++ A +Q++P +F G P
Sbjct: 396 PLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPP 453
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 192 (72.6 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 53/188 (28%), Positives = 96/188 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E +L F G V +I++ R+ T + Y +V + + A AER L T
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N TP+ G + R+ W+ ++ G ++F+ +L + L +TF S + ++
Sbjct: 71 LNNTPIRG--KACRIMWSQRDPSLRKSGVG---NVFIKNLDKGIDHKALYDTF-SAFGNI 124
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVVTD SKG+GFV + + ++A+ ++NG+ + + + + P K++ +
Sbjct: 125 LSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG---PFKSSKERG 180
Query: 205 QYAAVKAT 212
Q VK T
Sbjct: 181 QPTEVKFT 188
Score = 154 (59.3 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 44/154 (28%), Positives = 78/154 (50%)
Query: 48 GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE-QNFRLNWASFGI 106
GE+ +I I+ + G+ +G+GF F S AA+ V++ NG G R
Sbjct: 212 GEITNITIMADD-KGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIERE 270
Query: 107 GEKRPDAGPEH---SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGF 163
E + ++ ++++ ++ + + L+E F SQ+ ++ A V+ D SKG+GF
Sbjct: 271 AELKHTFETKYQGVNLYIKNIDDSIDNDKLREVF-SQFGTITSAIVMKDDKATTSKGFGF 329
Query: 164 VKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
V + +E RA+TEMNG T+P+ ++ A K
Sbjct: 330 VCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
Score = 148 (57.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 48/198 (24%), Positives = 89/198 (44%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
++F +L+ DV L+E + QY + ++ D + G+SKG+GF F +
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQ-QYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVE 246
Query: 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237
NG +P+ A KK ++ A +K T+ T Q ++
Sbjct: 247 NENGKIFHGKPIYAGRAQ-KKI----EREAELKHTFE-----TKYQ---------GVNLY 287
Query: 238 VGNLDPNVTEEELKQTFLHFGEIVNV------KIPMGRGCGFVQFAARASAEEAILRMQG 291
+ N+D ++ ++L++ F FG I + K +G GFV + A A A+ M G
Sbjct: 288 IKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNG 347
Query: 292 HMIGQQQVRISWGRKQDV 309
MIG + + ++ +++D+
Sbjct: 348 RMIGTKPLYVALAQRKDI 365
Score = 130 (50.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 48/213 (22%), Positives = 92/213 (43%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ + +G+GFV + + +A++ +
Sbjct: 97 VGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDD-GNSSKGFGFVHYETQESADKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKR--PDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
NG + G ++ F ++R P ++F +L+ DV L+E + Q
Sbjct: 156 AKVNGMMINGQ----KVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQ-Q 210
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
Y + ++ D + G+SKG+GF F + NG +P+ A KK
Sbjct: 211 YGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQ-KKI- 267
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITN 233
++ A +K T+ + + D+ I N
Sbjct: 268 ---EREAELKHTFETKYQGVNLYIKNIDDSIDN 297
Score = 77 (32.2 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEE 284
++ T +F NL +V ++LK+ +GEI N+ I +G GF F + +A+
Sbjct: 184 EVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKN 243
Query: 285 AILRMQG 291
+ G
Sbjct: 244 VVENENG 250
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 217 (81.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 73/249 (29%), Positives = 113/249 (45%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 62 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 112
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 113 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 171
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 172 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 231
Query: 214 PVAAYT-------TPVQV----------FPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
P + +P+ + P T IFV NL P+ E L Q F
Sbjct: 232 PGPLHHQAQRFRFSPITIDGMTSLVGMNIPGHTG-TGWCIFVYNLSPDSDESVLWQLFGP 290
Query: 257 FGEIVNVKI 265
FG + NVK+
Sbjct: 291 FGAVNNVKV 299
Score = 119 (46.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 256 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 314
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 315 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 347
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 192 NGQKPSGATEPITVKFAN 209
Score = 89 (36.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 266 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 325
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 326 IASLNGYRLGDRVLQVSF 343
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 218 (81.8 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 45/132 (34%), Positives = 78/132 (59%)
Query: 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167
+++ + + S+++GDLA DVTD L F+ +YPSVR A+V+ D TG S+GYGFVKF
Sbjct: 104 QQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFA 163
Query: 168 DENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYP--VAAYTTPVQVF 225
+ E+++A+ +MNG + + +P++++ T K+ + +T P A Y + + +
Sbjct: 164 SDVEKDKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTAIYVSQLDHY 223
Query: 226 PADNDITNTTIF 237
D + T IF
Sbjct: 224 -IDEGVLQT-IF 233
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 198 (74.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 54/174 (31%), Positives = 86/174 (49%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+ G+L Y D L+ ++++ N+ TGQ G+ FV + ++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+GT G + ++N+A K P EH +FVG+L+ VT L FR + V
Sbjct: 147 DGTEYLG--RALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFR-ECGDV 203
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
GA+VV D +TGRS+GYGFV + + E A+ ++G R +R++ A KK
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 213 (80.0 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 55/177 (31%), Positives = 93/177 (52%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T++IG+L ++ + G +V++ + ++++T +GYGFVEF S AE +
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
NG + G + R+N AS +K + G E +FVG+L P VT+ +L +TF S++ ++
Sbjct: 74 MNGIRLYG--KPIRVNKASAD-KQKSVEIGAE--LFVGNLDPMVTEQVLYDTF-SRFGNL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
V ++ SKGYGFV F D + A+ MNG + + + + A K G
Sbjct: 128 VNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKG 184
Score = 151 (58.2 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 41/118 (34%), Positives = 62/118 (52%)
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTT-----IFVGNLDPNVTEEELKQTFLHFGE 259
+YA+ + + Y P++V A D + +FVGNLDP VTE+ L TF FG
Sbjct: 68 EYAS-RIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGN 126
Query: 260 IVNV-KIP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+VN+ K+ + +G GFV FA S++ AI M G + +QV + + K+D G
Sbjct: 127 LVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKG 184
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 213 (80.0 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 82/277 (29%), Positives = 127/277 (45%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 95 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT 195
SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Query: 196 -PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
P + T Q Y + YP Q F DN + N V P +T + +
Sbjct: 205 NPSQKTNQAILSQLYQSPNRRYP-GPLAQQAQRFRLDN-LLNMAYGVKRFSP-MTIDGM- 260
Query: 252 QTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAIL 287
T L G +N+ G G C FV A A+E+IL
Sbjct: 261 -TSLA-G--INIPGHPGTGWCIFVYNLA-PDADESIL 292
Score = 123 (48.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 278 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG R +++S T K
Sbjct: 337 LNGYRLGDRVLQVSFKTNK 355
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 215 (80.7 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 47/183 (25%), Positives = 97/183 (53%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
EE T+++G L + D+ +L F H G V+ ++I + T + GYG+V+F + + AE+
Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEK 224
Query: 81 VLQTYNGTPMPGTEQNFRLNWAS-FGIGEKRPDAG-----PEHSIFVGDLAPDVTDYLLQ 134
+Q G + G N ++ + G ++ G P ++F+G+L+ + +
Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284
Query: 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194
E F +++ V ++ T P T + KG+G+V+F + + +A+ + G + RP+R+ +
Sbjct: 285 ELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343
Query: 195 TPK 197
+P+
Sbjct: 344 SPR 346
Score = 121 (47.7 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167
+K + +IFVG L+ + D L++ F V GA+V+ + T RS+GYG+V F
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFE-HIGGVIGARVIYERGTDRSRGYGYVDFE 217
Query: 168 DENERNRAMTEMNGVFCSTRPMRISAATPK 197
+++ +A+ EM G RP+ +T K
Sbjct: 218 NKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247
Score = 111 (44.1 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP------MGRGCGFVQFAARASAEEAILR 288
T+F+GNL N + + + F GE+V+V+IP +G G+VQF+ A++A+
Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327
Query: 289 MQGHMIGQQQVRISW 303
+QG I + VR+ +
Sbjct: 328 LQGEYIDNRPVRLDF 342
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 212 (79.7 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 78/257 (30%), Positives = 119/257 (46%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99
L S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRL 105
Query: 100 NWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGR 157
+ + RP + + +++V L +T L++ F SQY + ++++ D TG
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGI 164
Query: 158 SKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT-PKKTTG---FQQQYAAVKA 211
S+G GF++F E A+ +NG +T P+ + A P + T Q Y +
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224
Query: 212 TYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG- 270
YP Q F DN + N V P +T + + T L G +N+ G G
Sbjct: 225 RYP-GPLAQQAQRFRLDN-LLNMAYGVKRFSP-MTIDGM--TSLA-G--INIPGHPGTGW 276
Query: 271 CGFVQFAARASAEEAIL 287
C FV A A+E+IL
Sbjct: 277 CIFVYNLA-PDADESIL 292
Score = 123 (48.4 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 278 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG R +++S T K
Sbjct: 337 LNGYRLGDRVLQVSFKTNK 355
Score = 98 (39.6 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 91 (37.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 334 IASLNGYRLGDRVLQVSF 351
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 212 (79.7 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 78/257 (30%), Positives = 119/257 (46%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99
L S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRL 105
Query: 100 NWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGR 157
+ + RP + + +++V L +T L++ F SQY + ++++ D TG
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGI 164
Query: 158 SKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT-PKKTTG---FQQQYAAVKA 211
S+G GF++F E A+ +NG +T P+ + A P + T Q Y +
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224
Query: 212 TYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG- 270
YP Q F DN + N V P +T + + T L G +N+ G G
Sbjct: 225 RYP-GPLAQQAQRFRLDN-LLNMAYGVKRFSP-MTIDGM--TSLA-G--INIPGHPGTGW 276
Query: 271 CGFVQFAARASAEEAIL 287
C FV A A+E+IL
Sbjct: 277 CIFVYNLA-PDADESIL 292
Score = 123 (48.4 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 278 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG R +++S T K
Sbjct: 337 LNGYRLGDRVLQVSFKTNK 355
Score = 98 (39.6 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 91 (37.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 334 IASLNGYRLGDRVLQVSF 351
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 213 (80.0 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 82/277 (29%), Positives = 127/277 (45%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 123 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 173
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT 195
SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 174 -SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 232
Query: 196 -PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
P + T Q Y + YP Q F DN + N V P +T + +
Sbjct: 233 NPSQKTNQAILSQLYQSPNRRYP-GPLAQQAQRFRLDN-LLNMAYGVKRFSP-MTIDGM- 288
Query: 252 QTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAIL 287
T L G +N+ G G C FV A A+E+IL
Sbjct: 289 -TSLA-G--INIPGHPGTGWCIFVYNLA-PDADESIL 320
Score = 123 (48.4 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 306 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 364
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG R +++S T K
Sbjct: 365 LNGYRLGDRVLQVSFKTNK 383
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 213 (80.0 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 82/277 (29%), Positives = 127/277 (45%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 124 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 174
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT 195
SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 175 -SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 196 -PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
P + T Q Y + YP Q F DN + N V P +T + +
Sbjct: 234 NPSQKTNQAILSQLYQSPNRRYP-GPLAQQAQRFRLDN-LLNMAYGVKRFSP-MTIDGM- 289
Query: 252 QTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAIL 287
T L G +N+ G G C FV A A+E+IL
Sbjct: 290 -TSLA-G--INIPGHPGTGWCIFVYNLA-PDADESIL 321
Score = 123 (48.4 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 307 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG R +++S T K
Sbjct: 366 LNGYRLGDRVLQVSFKTNK 384
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 195 (73.7 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 44/124 (35%), Positives = 68/124 (54%)
Query: 67 YGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAP 126
Y FVEF H A L NG + G E ++NWA+ +K+ + H +FVGDL+P
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSP 67
Query: 127 DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186
++T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G +
Sbjct: 68 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 126
Query: 187 RPMR 190
R +R
Sbjct: 127 RQIR 130
Score = 125 (49.1 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEAILRM 289
+FVG+L P +T E++K F FG+I + ++ +G GFV F + AE AI+ M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 290 QGHMIGQQQVR 300
G +G +Q+R
Sbjct: 120 GGQWLGGRQIR 130
Score = 47 (21.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 161 YGFVKFLDENERNRAMTEMNGVFCSTRPMRIS-AATP---KKTT 200
Y FV+F + + A+ MNG + ++++ A TP KK T
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT 54
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 203 (76.5 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 65 EGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDL 124
+GYGFV F + AAER ++ NG + + F + S E+ + G F
Sbjct: 10 KGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRK--EREAELGARAKEFTNVY 66
Query: 125 APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184
+ + + E + + KV+TD +G+SKG+GFV F + +A+ EMNG
Sbjct: 67 IKNFGEDMDDERLKDLFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 125
Query: 185 STRPMRISAATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLD 242
+ + + + A K + T ++++ +K + Y ++V NLD
Sbjct: 126 NGKQIYVGRAQKKVERQTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLD 171
Query: 243 PNVTEEELKQTFLHFGEIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQ 298
+ +E L++ F FG I + K+ M GR G GFV F++ A +A+ M G ++ +
Sbjct: 172 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 231
Query: 299 VRISWGRKQD 308
+ ++ ++++
Sbjct: 232 LYVALAQRKE 241
Score = 176 (67.0 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 60 KEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 115
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 116 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 175
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 176 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 232
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 233 YVALAQRKEERQAHLTNQYMQRMASVRA 260
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 212 (79.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 73/256 (28%), Positives = 117/256 (45%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 69 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 119
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 120 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 178
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + T Q Y + Y
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQALLSQLYQSPNRRY 238
Query: 214 PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGF 273
P + Q F DN + N V P +T + + +V + IP G G+
Sbjct: 239 PGPLHHQ-AQRFRLDN-LLNMAYGVKRFSP-ITIDGMTS-------LVGMNIPGHTGTGW 288
Query: 274 VQFAARAS--AEEAIL 287
F S ++E++L
Sbjct: 289 CIFVYNLSPDSDESVL 304
Score = 119 (46.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 276 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 334
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 335 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 91 (37.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 199 NGQKPSGATEPITVKFAN 216
Score = 89 (36.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 286 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 345
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 346 IASLNGYRLGDRVLQVSF 363
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 211 (79.3 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 79/257 (30%), Positives = 127/257 (49%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV +V A++ + T NG + + ++++
Sbjct: 56 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQ--TKTIKVSY 113
Query: 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNT-GRSKG 160
A R DA +++V L ++ +++ F SQY + ++++ D T G S+G
Sbjct: 114 ARPSSASIR-DA----NLYVSGLPKTMSQKDMEQLF-SQYGRIITSRILVDQVTAGISRG 167
Query: 161 YGFVKFLDENERNRAMTEMNGV--FCSTRPMRISAAT-PKKTTGFQQQYAAVKATYPVAA 217
GF++F NE A+ +NG + P+ + A P + TG A + Y AA
Sbjct: 168 VGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG----QALLTQLYQTAA 223
Query: 218 --YTTPV----QVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG- 270
YT P+ Q F DN + N + V P +T + + T L G VN+ P G G
Sbjct: 224 RRYTGPLHHQTQRFRLDN-LLNASYGVKRFSP-ITIDSM--TSLA-G--VNLTGPTGAGW 276
Query: 271 CGFVQFAARASAEEAIL 287
C FV + A+E++L
Sbjct: 277 CIFV-YNLSPEADESVL 292
Score = 128 (50.1 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 132 LLQETFRSQYPSV---RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
+ QE F+S + S+ K+V D TG+S GYGFV ++D N+ ++A+ +NG+ T+
Sbjct: 49 MTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKT 108
Query: 189 MRISAATPKKTT 200
+++S A P +
Sbjct: 109 IKVSYARPSSAS 120
Score = 95 (38.5 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI-------PMGRGCGFVQFAA 278
P+ I + ++V L +++++++Q F +G I+ +I + RG GF++F
Sbjct: 116 PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDK 175
Query: 279 RASAEEAILRMQG 291
R AEEAI + G
Sbjct: 176 RNEAEEAIKGLNG 188
Score = 91 (37.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IFV NL P E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 338 NGYRLGDRVLQVSF 351
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 216 (81.1 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 66/252 (26%), Positives = 124/252 (49%)
Query: 65 EGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVG 122
+GYGFV F + AAER ++ NG + + F + S E A + ++++
Sbjct: 106 KGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 123 DLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182
+ D+ D L++ F P++ KV+TD +G+SKG+GFV F + +A+ EMNG
Sbjct: 165 NFGEDMDDERLKDLFGKFGPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 222
Query: 183 FCSTRPMRISAATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGN 240
+ + + + A K + T ++++ +K + Y ++V N
Sbjct: 223 ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKN 268
Query: 241 LDPNVTEEELKQTFLHFGEIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQ 296
LD + +E L++ F FG I + K+ M GR G GFV F++ A +A+ M G ++
Sbjct: 269 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 297 QQVRISWGRKQD 308
+ + ++ ++++
Sbjct: 329 KPLYVALAQRKE 340
Score = 186 (70.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 156 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 214
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 215 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 274
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 275 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 331
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 332 YVALAQRKEERQAHLTNQYMQRMASVRA 359
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRI 191
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPVRI 84
Score = 109 (43.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWA 102
N + G + R+ W+
Sbjct: 72 MNFDVIKG--KPVRIMWS 87
Score = 93 (37.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
PS+R + VV D N G SKGYGFV F + RA+ +MNG+ + R + + +K
Sbjct: 91 PSLRKSGVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 145
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 193 (73.0 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 51/164 (31%), Positives = 83/164 (50%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 95 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
SQY + ++++ D TG S+G GF++F E A+ +NG
Sbjct: 146 -SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 118 (46.6 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
++ V L ++T L+ F S + K+V D TG+S GYGFV ++D + +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 178 EMNGVFCSTRPMRISAATPKKTT 200
+NG+ T+ +++S A P +
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSAS 121
Score = 107 (42.7 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
P+ I + ++V L +T++EL+Q F +G I+ +I + RG GF++F R
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 280 ASAEEAILRMQG 291
AEEAI + G
Sbjct: 177 IEAEEAIKGLNG 188
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 47/143 (32%), Positives = 75/143 (52%)
Query: 27 WIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86
++G+L E + F+ G + K+I + P Y FVEF H A L N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAMN 59
Query: 87 GTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG 146
G + G E ++NWA+ +K+ + H +FVGDL+P++T ++ F + + +
Sbjct: 60 GRKIMGKE--VKVNWATTPSSQKKDTSNHFH-VFVGDLSPEITTEDIKAAF-APFGRISD 115
Query: 147 AKVVTDPNTGRSKGYGFVKFLDE 169
A+VV D TG+SKGYGFV F ++
Sbjct: 116 ARVVKDMATGKSKGYGFVSFFNK 138
Score = 88 (36.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 120 FVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179
+VG+L+ DVT+ L+ + F SQ + K++ D T + Y FV+F + A+ M
Sbjct: 2 YVGNLSRDVTEALILQLF-SQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 58
Query: 180 NGVFCSTRPMRIS-AATP---KKTT 200
NG + ++++ A TP KK T
Sbjct: 59 NGRKIMGKEVKVNWATTPSSQKKDT 83
Score = 80 (33.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQF 276
+FVG+L P +T E++K F FG I + ++ +G GFV F
Sbjct: 89 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 135
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 209 (78.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 76/280 (27%), Positives = 126/280 (45%)
Query: 19 TLEEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
T ++ +T L + L + S F GE+ S K++R+KITGQ GYGFV ++
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQE 135
AE+ + T NG RL + + RP + + +++V L +T L++
Sbjct: 105 AEKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 155
Query: 136 TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISA 193
F SQY + ++++ D TG S+G GF++F E A+ +NG S T P+ +
Sbjct: 156 LF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
Query: 194 AT-PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEE 249
A P + + Q Y + YP + Q F DN + N V P +T +
Sbjct: 215 ANNPSQKSSQALLSQLYQSPNRRYPGPLHHQ-AQRFRLDN-LLNMAYGVKRFSP-ITIDG 271
Query: 250 LKQTFLHFGEIVNVKIPMGRGCGFVQFAARAS--AEEAIL 287
+ +V + IP G G+ F S ++E++L
Sbjct: 272 MTS-------LVGMNIPGHTGTGWCIFVYNLSPDSDESVL 304
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 276 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 334
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 335 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 367
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 210 (79.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 72/256 (28%), Positives = 116/256 (45%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 106 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 156
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 157 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGGSR 215
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S P+ + A P + T Q Y + Y
Sbjct: 216 GVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQSPNRRY 275
Query: 214 PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGF 273
P + Q F DN + N V P +T + + +V + IP G G+
Sbjct: 276 PGPLHHQ-AQRFRLDN-LLNMAYGVKRFSP-ITIDSMTS-------LVGMNIPGHTGTGW 325
Query: 274 VQFAARAS--AEEAIL 287
F S ++E++L
Sbjct: 326 CIFVYNLSPDSDESVL 341
Score = 119 (46.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 313 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 371
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 372 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 404
Score = 91 (37.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 236 NGQKPSGAAEPITVKFAN 253
Score = 89 (36.4 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 323 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 382
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 383 IASLNGYRLGDRVLQVSF 400
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 208 (78.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 76/278 (27%), Positives = 121/278 (43%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 95 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT 195
SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Query: 196 -PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
P + T Q Y + YP Q F DN + N+ V
Sbjct: 205 NPSQKTNQAILSQLYQSPNRRYP-GPLAQQAQRFRLDNLL--------NMAYGVKSRFSP 255
Query: 252 QTFLHFGEIVNVKIPMGRGCGFVQFAARAS--AEEAIL 287
T + + IP G G+ F + A+E+IL
Sbjct: 256 MTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESIL 293
Score = 123 (48.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 279 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG R +++S T K
Sbjct: 338 LNGYRLGDRVLQVSFKTNK 356
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 208 (78.3 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 72/256 (28%), Positives = 117/256 (45%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 64 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 114
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 173
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 233
Query: 214 PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGF 273
P + Q F DN + N V P +T + + +V + IP G G+
Sbjct: 234 PGPLHHQ-AQRFRLDN-LLNMAYGVKRFSP-ITIDGMTS-------LVGMNIPGHTGTGW 283
Query: 274 VQFAARAS--AEEAIL 287
F S ++E++L
Sbjct: 284 CIFVYNLSPDSDESVL 299
Score = 119 (46.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 271 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 329
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 330 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 91 (37.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 194 NGQKPSGATEPITVKFAN 211
Score = 89 (36.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 281 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 340
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 341 IASLNGYRLGDRVLQVSF 358
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 208 (78.3 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 72/256 (28%), Positives = 117/256 (45%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 64 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 114
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 173
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 233
Query: 214 PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGF 273
P + Q F DN + N V P +T + + +V + IP G G+
Sbjct: 234 PGPLHHQ-AQRFRLDN-LLNMAYGVKRFSP-ITIDGMTS-------LVGMNIPGHTGTGW 283
Query: 274 VQFAARAS--AEEAIL 287
F S ++E++L
Sbjct: 284 CIFVYNLSPDSDESVL 299
Score = 119 (46.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 271 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 329
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 330 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 91 (37.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 194 NGQKPSGATEPITVKFAN 211
Score = 89 (36.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 281 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 340
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 341 IASLNGYRLGDRVLQVSF 358
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 196 (74.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 50/189 (26%), Positives = 97/189 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G V SI++ R+ +T + GY +V + + A E+ L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 122 LNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTFAA-FGNI 175
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D N G SKGYGFV + + ++A+ +NG+ + + + + PKK Q
Sbjct: 176 LSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR--QS 232
Query: 205 QYAAVKATY 213
++ +KA +
Sbjct: 233 KFDEMKANF 241
Score = 196 (74.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 63/246 (25%), Positives = 116/246 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D L FA G ++S K+ +++ G +GYGFV + + AA + ++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 209
Query: 86 NGTPMPGTEQNFRLNWASFGIGEK-RPDAGPEH-----SIFVGDLAPDVTDYLLQETFRS 139
NG + N + + I +K R E +I+V ++ P+VTD + F
Sbjct: 210 NGMLL-----NEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE- 263
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
+Y V + + D TG+S+G+GFV F + ++A+ E+N + + + A K
Sbjct: 264 KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKK-- 321
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
++ ++ +Y AA + N +++ NLD V +E+L+Q F FG
Sbjct: 322 ---HEREEELRKSYE-AARQEKASKYQGVN------LYIKNLDDEVDDEKLRQLFSEFGP 371
Query: 260 IVNVKI 265
I + K+
Sbjct: 372 ITSAKV 377
Score = 127 (49.8 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 40/164 (24%), Positives = 72/164 (43%)
Query: 150 VTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAV 209
V G SKGYGFV + + ++A+ +NG+ + + + + PKK Q ++ +
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR--QSKFDEM 237
Query: 210 KATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-- 267
KA + T I+V N++P VT++E + F +G++ + +
Sbjct: 238 KANF--------------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQ 277
Query: 268 ----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
RG GFV F + A +A+ + Q + + GR Q
Sbjct: 278 ETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYV--GRAQ 319
Score = 105 (42.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 37/150 (24%), Positives = 70/150 (46%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-- 93
D+ + + F G+V S + R++ TG+ G+GFV F SH A + +Q N G
Sbjct: 255 DDEF-RTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNL 313
Query: 94 ---------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
E+ L + +++ ++++ +L +V D L++ F S++ +
Sbjct: 314 YVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLF-SEFGPI 372
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
AKV+ D T + G K +E+E+N+
Sbjct: 373 TSAKVMRDSITEPGEE-GESKEGEESEKNK 401
Score = 63 (27.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 264 KIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309
K+ +G GFV FA A +A+ M M+ + + ++ +++DV
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDV 473
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 213 (80.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 73/294 (24%), Positives = 140/294 (47%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ G +G+GFV F + AAER +
Sbjct: 98 VGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE-NGS-KGHGFVHFETEEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH----SIFVGDLAPDVTDYLLQETFR 138
+ NG + + F + S E+ + G ++++ + + D L F
Sbjct: 156 EKMNGMLL-NDRKVFVGQFKSRK--EREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLF- 211
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
++ V KV+TD G+SKG+GFV F + +A+ EMNG + + + + A KK
Sbjct: 212 GRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQ-KK 269
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++ +K + ++ + N ++V NLD + +E L++ F FG
Sbjct: 270 V----DRHIELKRKFEQVTQDRGIR-YQGIN------LYVKNLDDGIDDERLQKEFSPFG 318
Query: 259 EIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ GR G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKE 372
Score = 199 (75.1 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 56/174 (32%), Positives = 89/174 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ +R G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRRSGVG---NVFIKNLNKTIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
KVV D N G SKG+GFV F E RA+ +MNG+ + R + + +K
Sbjct: 126 LSCKVVCDEN-G-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRK 177
Score = 189 (71.6 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 55/208 (26%), Positives = 106/208 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L+ F G+V+S+K++ ++ G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G +++ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D LQ+ F S + ++ KV+T+ GRSKG+GFV F E +A++EMNG +T+P+
Sbjct: 307 DERLQKEF-SPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V++
Sbjct: 364 YVALAQRKEERQAHLTNQYIQRMASVRS 391
Score = 126 (49.4 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 112 DAG-PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDEN 170
D G P S++VGDL PDVT+ +L E F S P + +V D T RS GY V F
Sbjct: 5 DPGCPMASLYVGDLHPDVTEAMLYEKFSSAGP-ILSIRVYRDVITRRSLGYASVNFEQPA 63
Query: 171 ERNRAMTEMNGVFCSTRPMRI 191
+ RA+ MN +P+RI
Sbjct: 64 DAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 208 (78.3 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 72/256 (28%), Positives = 117/256 (45%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 80 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 130
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 131 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 189
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 190 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 249
Query: 214 PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGF 273
P + Q F DN + N V P +T + + +V + IP G G+
Sbjct: 250 PGPLHHQ-AQRFRLDN-LLNMAYGVKRFSP-ITIDGMTS-------LVGMNIPGHTGTGW 299
Query: 274 VQFAARAS--AEEAIL 287
F S ++E++L
Sbjct: 300 CIFVYNLSPDSDESVL 315
Score = 119 (46.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 287 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 345
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 346 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 378
Score = 91 (37.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 210 NGQKPSGATEPITVKFAN 227
Score = 89 (36.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 297 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 356
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 357 IASLNGYRLGDRVLQVSF 374
>GENEDB_PFALCIPARUM|PFF1425w [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 214 (80.4 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 54/185 (29%), Positives = 92/185 (49%)
Query: 24 RTLWIGDLQYW----FDENYLSSC--FAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
+TLW+GDL+ DENY+ C + +++ IK+ + K + Q Y F+EF ++
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEK----RPDAGPE------HSIFVGDLAPD 127
A+ + NG +PG F+LNWA + + + D E +SI+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 128 VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
T ++ F + Y S+ K++ + K Y F+ F + +E RA+TEMNG
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGYIFKGC 201
Query: 188 PMRIS 192
+++S
Sbjct: 202 KIKVS 206
>UNIPROTKB|C6KTC9 [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 214 (80.4 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 54/185 (29%), Positives = 92/185 (49%)
Query: 24 RTLWIGDLQYW----FDENYLSSC--FAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
+TLW+GDL+ DENY+ C + +++ IK+ + K + Q Y F+EF ++
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEK----RPDAGPE------HSIFVGDLAPD 127
A+ + NG +PG F+LNWA + + + D E +SI+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 128 VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
T ++ F + Y S+ K++ + K Y F+ F + +E RA+TEMNG
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGYIFKGC 201
Query: 188 PMRIS 192
+++S
Sbjct: 202 KIKVS 206
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 208 (78.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 76/278 (27%), Positives = 121/278 (43%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 124 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 174
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT 195
SQY + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 175 -SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 196 -PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
P + T Q Y + YP Q F DN + N+ V
Sbjct: 234 NPSQKTNQAILSQLYQSPNRRYP-GPLAQQAQRFRLDNLL--------NMAYGVKSRFSP 284
Query: 252 QTFLHFGEIVNVKIPMGRGCGFVQFAARAS--AEEAIL 287
T + + IP G G+ F + A+E+IL
Sbjct: 285 MTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESIL 322
Score = 114 (45.2 bits), Expect = 0.00093, P = 0.00093
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E A+
Sbjct: 308 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 179 MNGVFCSTRPMRI 191
+NG R +++
Sbjct: 367 LNGYRLGDRVLQV 379
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 141 (54.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 41/157 (26%), Positives = 73/157 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L+IG + DE L F G++ + +I++K TG +G F+ + + +A +
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R G + +FVG L TD ++ F + + ++
Sbjct: 69 HEQKTLPGMNRPIQVKPAD---SESR---GEDRKLFVGMLGKQQTDEDVRRMFET-FGNI 121
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVKF E A+ ++G
Sbjct: 122 DECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 116 (45.9 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 36/119 (30%), Positives = 53/119 (44%)
Query: 199 TTGFQQQYAAVKA--TYPVAAYTT-PVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFL 255
T + Y V T P A T P Q IF+ +L T+ E+ Q FL
Sbjct: 339 TAAYPAAYGLVSPAFTQPPAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFL 398
Query: 256 HFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
FG +++ K+ + R C GFV F SA+ AI M G IG +++++ R +D
Sbjct: 399 PFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPKD 457
Score = 100 (40.3 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE +IF+ L + TD + + F + +V AKV D T +SK +GFV F +
Sbjct: 373 GPEGCNIFIYHLPQEFTDSEILQMFLP-FGNVISAKVFVDRATNQSKCFGFVSFDNPGSA 431
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 432 QAAIQSMNGFQIGMKRLKVQLKRPK 456
Score = 68 (29.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 22 EVRTLWIGDL-QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E R L++G L + DE+ + F G + ++R G +G FV+F +H A+
Sbjct: 93 EDRKLFVGMLGKQQTDED-VRRMFETFGNIDECTVLRGP-DGTSKGCAFVKFQTHTEAQA 150
Query: 81 VLQTYNGT-PMPGTEQNFRLNWA 102
+ +G+ +PG + + +A
Sbjct: 151 AINALHGSRTLPGASSSLVVKFA 173
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 207 (77.9 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 75/285 (26%), Positives = 125/285 (43%)
Query: 19 TLEEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
T ++ +T L + L + S F GE+ S K++R+KITGQ GYGFV ++
Sbjct: 40 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQE 135
AE+ + T NG RL + + RP + + +++V L +T L++
Sbjct: 100 AEKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
Query: 136 TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISA 193
F SQY + ++++ D TG S+G GF++F E A+ +NG S T P+ +
Sbjct: 151 LF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
Query: 194 AT-PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNT----TIFVGNLDPNV 245
A P + + Q Y + YP + Q F DN + + G + P+
Sbjct: 210 ANNPSQKSSQALLSQLYQSPNRRYPGPLHHQ-AQRFRLDNLLNMAYGVKRLMSGPVPPSA 268
Query: 246 TEEELKQ-TFLHFGEIVNVKIPMGRGCGFVQFAARAS--AEEAIL 287
T +V + IP G G+ F S ++E++L
Sbjct: 269 CPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVL 313
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 285 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 343
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 344 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 207 (77.9 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 75/285 (26%), Positives = 125/285 (43%)
Query: 19 TLEEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
T ++ +T L + L + S F GE+ S K++R+KITGQ GYGFV ++
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQE 135
AE+ + T NG RL + + RP + + +++V L +T L++
Sbjct: 105 AEKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 155
Query: 136 TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISA 193
F SQY + ++++ D TG S+G GF++F E A+ +NG S T P+ +
Sbjct: 156 LF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
Query: 194 AT-PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNT----TIFVGNLDPNV 245
A P + + Q Y + YP + Q F DN + + G + P+
Sbjct: 215 ANNPSQKSSQALLSQLYQSPNRRYPGPLHHQ-AQRFRLDNLLNMAYGVKRLMSGPVPPSA 273
Query: 246 TEEELKQ-TFLHFGEIVNVKIPMGRGCGFVQFAARAS--AEEAIL 287
T +V + IP G G+ F S ++E++L
Sbjct: 274 CPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVL 318
Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 290 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 348
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 349 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 168 (64.2 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 50/177 (28%), Positives = 88/177 (49%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPE--------GYGFVEFVSHAAAERVLQTYNGTPMP 91
L S F+ GEV S K+IR+K+ G GYGFV +V+ + AER + T NG
Sbjct: 72 LRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNG---- 127
Query: 92 GTEQNFRLNWASFGIGEKRP--DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKV 149
RL + + RP D + ++++ L +T +++ F +QY + +++
Sbjct: 128 -----LRLQSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMF-TQYGRIINSRI 181
Query: 150 VTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS--TRPMRIS-AATPKKTTGFQ 203
+ D +G S+G F++F +E A+ ++NG S + P+ + AA P ++ Q
Sbjct: 182 LVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQ 238
Score = 104 (41.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IFV +L D + +L + F + +V KV+ D NT + KG+GFV + E A++
Sbjct: 288 IFVYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISS 346
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG + +++S + K
Sbjct: 347 LNGYRLGDKVLQVSFKSSK 365
Score = 99 (39.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
P+ + I + +++ L +T++ ++ F +G I+N +I + RG F++F R
Sbjct: 142 PSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKR 201
Query: 280 ASAEEAILRMQG 291
+ AEEAI + G
Sbjct: 202 SEAEEAIKDLNG 213
Score = 90 (36.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 26/99 (26%), Positives = 53/99 (53%)
Query: 106 IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDP-------NT-GR 157
+G++ DA + ++ + L +++ L+ F S V AK++ D +T G
Sbjct: 47 MGDEPSDA--KTNLIINYLPQNMSQEELRSLF-SSIGEVESAKLIRDKMAGMSAHHTLGH 103
Query: 158 SKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196
S GYGFV +++ ++ RA+ +NG+ ++ +++S A P
Sbjct: 104 SLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARP 142
Score = 81 (33.6 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 227 ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARA 280
A + + IFV NL + E L Q F FG + NVK+ +G GFV
Sbjct: 279 ASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYE 338
Query: 281 SAEEAILRMQGHMIGQQQVRISW 303
A AI + G+ +G + +++S+
Sbjct: 339 EAAMAISSLNGYRLGDKVLQVSF 361
Score = 80 (33.2 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 16/78 (20%), Positives = 36/78 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F G +++ +I+ ++ +G G F+ F + AE ++
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDL 211
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG+ G + + +A+
Sbjct: 212 NGSKPSGASEPITVKFAA 229
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 206 (77.6 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 71/261 (27%), Positives = 116/261 (44%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 57 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 107
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 166
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 226
Query: 214 PVAAYTTPVQVFPADNDITNT----TIFVGNLDPNVTEEELKQ-TFLHFGEIVNVKIPMG 268
P + Q F DN + + G + P+ T +V + IP
Sbjct: 227 PGPLHHQ-AQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGH 285
Query: 269 RGCGFVQFAARAS--AEEAIL 287
G G+ F S ++E++L
Sbjct: 286 TGTGWCIFVYNLSPDSDESVL 306
Score = 119 (46.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 278 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 336
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 337 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 91 (37.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPSGATEPITVKFAN 204
Score = 89 (36.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 288 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 347
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 348 IASLNGYRLGDRVLQVSF 365
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 206 (77.6 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 71/261 (27%), Positives = 116/261 (44%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 57 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 107
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 166
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 226
Query: 214 PVAAYTTPVQVFPADNDITNT----TIFVGNLDPNVTEEELKQ-TFLHFGEIVNVKIPMG 268
P + Q F DN + + G + P+ T +V + IP
Sbjct: 227 PGPLHHQ-AQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGH 285
Query: 269 RGCGFVQFAARAS--AEEAIL 287
G G+ F S ++E++L
Sbjct: 286 TGTGWCIFVYNLSPDSDESVL 306
Score = 119 (46.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 278 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 336
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 337 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 91 (37.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 187 NGQKPSGATEPITVKFAN 204
Score = 89 (36.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 288 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 347
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 348 IASLNGYRLGDRVLQVSF 365
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 206 (77.6 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 71/261 (27%), Positives = 116/261 (44%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 64 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 114
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 173
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 233
Query: 214 PVAAYTTPVQVFPADNDITNT----TIFVGNLDPNVTEEELKQ-TFLHFGEIVNVKIPMG 268
P + Q F DN + + G + P+ T +V + IP
Sbjct: 234 PGPLHHQ-AQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGH 292
Query: 269 RGCGFVQFAARAS--AEEAIL 287
G G+ F S ++E++L
Sbjct: 293 TGTGWCIFVYNLSPDSDESVL 313
Score = 119 (46.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 285 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 343
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 344 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 91 (37.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 194 NGQKPSGATEPITVKFAN 211
Score = 89 (36.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 295 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 354
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 355 IASLNGYRLGDRVLQVSF 372
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 206 (77.6 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 71/261 (27%), Positives = 116/261 (44%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 68 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 118
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 119 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 177
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 178 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 237
Query: 214 PVAAYTTPVQVFPADNDITNT----TIFVGNLDPNVTEEELKQ-TFLHFGEIVNVKIPMG 268
P + Q F DN + + G + P+ T +V + IP
Sbjct: 238 PGPLHHQ-AQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGH 296
Query: 269 RGCGFVQFAARAS--AEEAIL 287
G G+ F S ++E++L
Sbjct: 297 TGTGWCIFVYNLSPDSDESVL 317
Score = 119 (46.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 289 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 347
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 348 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 380
Score = 91 (37.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 198 NGQKPSGATEPITVKFAN 215
Score = 89 (36.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 299 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 358
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 359 IASLNGYRLGDRVLQVSF 376
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 206 (77.6 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 71/261 (27%), Positives = 116/261 (44%)
Query: 42 SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101
S F GE+ S K++R+KITGQ GYGFV ++ AE+ + T NG RL
Sbjct: 69 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQT 119
Query: 102 ASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
+ + RP + + +++V L +T L++ F SQY + ++++ D TG S+
Sbjct: 120 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSR 178
Query: 160 GYGFVKFLDENERNRAMTEMNGVFCS--TRPMRISAAT-PKKTTG---FQQQYAAVKATY 213
G GF++F E A+ +NG S T P+ + A P + + Q Y + Y
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRY 238
Query: 214 PVAAYTTPVQVFPADNDITNT----TIFVGNLDPNVTEEELKQ-TFLHFGEIVNVKIPMG 268
P + Q F DN + + G + P+ T +V + IP
Sbjct: 239 PGPLHHQ-AQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGH 297
Query: 269 RGCGFVQFAARAS--AEEAIL 287
G G+ F S ++E++L
Sbjct: 298 TGTGWCIFVYNLSPDSDESVL 318
Score = 119 (46.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 106 IGEKRPD-AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164
+G P G IFV +L+PD + +L + F + +V KV+ D NT + KG+GFV
Sbjct: 290 VGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFV 348
Query: 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ +E A+ +NG R +++S T K
Sbjct: 349 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 91 (37.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L++ L + L F+ G +++ +I+ +++TG G GF+ F AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG G + + +A+
Sbjct: 199 NGQKPSGATEPITVKFAN 216
Score = 89 (36.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEA 285
T IFV NL P+ E L Q F FG + NVK+ +G GFV A A
Sbjct: 300 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 359
Query: 286 ILRMQGHMIGQQQVRISW 303
I + G+ +G + +++S+
Sbjct: 360 IASLNGYRLGDRVLQVSF 377
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 205 (77.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 58/181 (32%), Positives = 95/181 (52%)
Query: 51 VSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKR 110
V++ + ++++T +GYGFVEF+S A+ ++ N + G + R+N AS +K
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYG--KPIRVNKAS--AHQKN 114
Query: 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDEN 170
D G +IF+G+L +V + LL +TF + ++ K++ DP TG+SK + F+ F
Sbjct: 115 LDVGA--NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFE 172
Query: 171 ERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVK---ATYPVAAYTTPVQVFPA 227
+ AM MNG + RP+ +S A K G + AA + A P P Q+F A
Sbjct: 173 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLF-A 231
Query: 228 D 228
D
Sbjct: 232 D 232
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 210 (79.0 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 74/293 (25%), Positives = 137/293 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D L F+ G ++S K+ + +TG+ +GYGFV+F +A+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 86 NGTPMPGTEQNFR---LNWASFGIGEKRPDAGPEHS-IFVGDLAPDVTDYLLQETFRSQY 141
NG M +Q F + E P P + ++V +L ++ + L++TF ++
Sbjct: 197 NGMLM-NDKQVFVGHFIRRQERARDENTPT--PRFTNVYVKNLPKEIGEDELRKTF-GKF 252
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
+ A V+ D +G S+ +GFV F A+ +MNG+ + + A K
Sbjct: 253 GVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKS--- 308
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
++ ++ + + F +++ NLD +V +E+LK+ F +G +
Sbjct: 309 --EREEELRRKFEQER----INRFEKSQ---GANLYLKNLDDSVDDEKLKEMFSEYGNVT 359
Query: 262 NVKI---PMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQD 308
+ K+ P G RG GFV ++ A A+ M G MIG++ + I+ RK+D
Sbjct: 360 SSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412
Score = 178 (67.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 48/163 (29%), Positives = 84/163 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L+ GDL E +L F H VVS+++ R++ + GY ++ F + A R ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEA 108
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N TP+ ++ R+ ++ + G +IF+ +L + + L ETF S + ++
Sbjct: 109 LNYTPL--FDRPIRIMLSNRDPSTRLSGKG---NIFIKNLDASIDNKALFETF-SSFGTI 162
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D TGRSKGYGFV+F E A+ ++NG+ + +
Sbjct: 163 LSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Score = 162 (62.1 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 53/211 (25%), Positives = 98/211 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
+++ +L E+ L F G + S ++R++ +G +GFV F AA ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 86 NGTPMPGT-------------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYL 132
NG + E+ R + I G ++++ +L V D
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGA--NLYLKNLDDSVDDEK 347
Query: 133 LQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192
L+E F S+Y +V +KV+ +P G S+G+GFV + + E RA++EMNG +P+ I+
Sbjct: 348 LKEMF-SEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 193 AATPK--KTTGFQQQYAAVKATYPVAAYTTP 221
A K + Q ++ ++A P++ + P
Sbjct: 406 LAQRKEDRRAHLQALFSQIRAPGPMSGFHHP 436
Score = 127 (49.8 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 35/114 (30%), Positives = 62/114 (54%)
Query: 206 YAAVKATYPVAAYTTPVQVFPADNDITNT-----TIFVGNLDPNVTEEELKQTFLHFGEI 260
Y A++A + P+++ ++ D + IF+ NLD ++ + L +TF FG I
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTI 162
Query: 261 VNVKIPM---GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRIS-WGRKQD 308
++ K+ M GR G GFVQF SA+ AI ++ G ++ +QV + + R+Q+
Sbjct: 163 LSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQE 216
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 139 (54.0 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 41/157 (26%), Positives = 72/157 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L+IG + DE L F G++ + +I++K TG +G F+ + + +A +
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R G + +FVG L TD ++ F + ++
Sbjct: 69 HEQKTLPGMNRPIQVKPAD---SESR---GEDRKLFVGMLGKQQTDEDVRRMFEP-FGNI 121
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVKF E A+ ++G
Sbjct: 122 DECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 115 (45.5 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 38/124 (30%), Positives = 57/124 (45%)
Query: 201 GFQQQYAAVKATYPVA--AYTTP---VQVFPADNDITNT-----TIFVGNLDPNVTEEEL 250
G Q AA A Y + A+T P +Q P IF+ +L T+ E+
Sbjct: 334 GMQHYTAAYPAAYGLVSPAFTQPPAILQQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEI 393
Query: 251 KQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304
Q FL FG +++ K+ + R C GFV F SA+ AI M G IG +++++
Sbjct: 394 LQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLKVQLK 453
Query: 305 RKQD 308
R +D
Sbjct: 454 RPKD 457
Score = 99 (39.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE +IF+ L + TD + + F + +V AKV D T +SK +GFV F +
Sbjct: 373 GPEGCNIFIYHLPQEFTDSEILQMFLP-FGNVISAKVFVDRATNQSKCFGFVSFDNPGSA 431
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 432 QAAIQAMNGFQIGMKRLKVQLKRPK 456
Score = 68 (29.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 22 EVRTLWIGDL-QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E R L++G L + DE+ + F G + ++R G +G FV+F +H A+
Sbjct: 93 EDRKLFVGMLGKQQTDED-VRRMFEPFGNIDECTVLRGP-DGTSKGCAFVKFQTHTEAQA 150
Query: 81 VLQTYNGT-PMPGTEQNFRLNWA 102
+ +G+ +PG + + +A
Sbjct: 151 AINALHGSRTLPGASSSLVVKFA 173
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 201 (75.8 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 55/175 (31%), Positives = 89/175 (50%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
EE + L++G+L Y + L+ F G V ++I N+ T Q G+GFV S AE
Sbjct: 148 EEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDA-GPEHSIFVGDLAPDVTDYLLQETFRS 139
++ +N + G E+ P P ++VG+L DV + L++ F S
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194
++ V A+VV D TGRS+G+GFV D +E N A++ ++G R +R++ A
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 208 (78.3 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 72/298 (24%), Positives = 139/298 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D + F+ G ++S K+ + G +GYGFV F + +A+ ++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHS-IFVGDLAPDVTDYLLQETFRSQYPSV 144
NG + + ++ ++G +++ +FV + + L F S++ +
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMF-SKFGEI 264
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
A V+TD G+ KG+GFV F D++ +A+ ++N ++S +K + +
Sbjct: 265 TSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKS---E 320
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A +K Y A VQ + N ++V N++ ++ ++ L+ F FG I + K
Sbjct: 321 RSAELKRKYE-ALKQERVQRYQGVN------LYVKNIEEDLNDDGLRDHFSSFGTITSAK 373
Query: 265 IPM---GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQDVTGSVAAQ 316
+ + GR G GFV F A A+ M MIG + + ++ RK+D +A+Q
Sbjct: 374 VMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQ 431
Score = 196 (74.1 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 54/173 (31%), Positives = 88/173 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L+IGDL E L F+ G V+SI++ R+ + GY +V F A AER L T
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ +R G +IF+ +L + + + +TF S + ++
Sbjct: 118 MNFEVIHG--RPMRIMWSQRDPAARRAGNG---NIFIKNLDRVIDNKSVYDTF-SLFGNI 171
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
KV TD + G SKGYGFV F E+ A+ ++NG+ S + + + P+
Sbjct: 172 LSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Score = 185 (70.2 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 55/192 (28%), Positives = 94/192 (48%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-- 93
D+ LS+ F+ GE+ S ++ G+P+G+GFV F AA + ++ N + + GT
Sbjct: 250 DQEKLSAMFSKFGEITSA-VVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDC 308
Query: 94 -----------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142
E++ L + ++R +++V ++ D+ D L++ F S +
Sbjct: 309 KLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHF-SSFG 367
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202
++ AKV+ D N GRSKG+GFV F E A+T+MN +P+ ++ A K+
Sbjct: 368 TITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRA 426
Query: 203 Q--QQYAAVKAT 212
Q QY AT
Sbjct: 427 QLASQYMQRLAT 438
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 184 (69.8 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 50/163 (30%), Positives = 82/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI+I R+KIT + GY +V + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L F S + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIF-SAFGNI 116
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D G KGYGFV F + RA+ MNG+F + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYR 157
Score = 114 (45.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S++VGDL P+VT+ +L E F P + ++ D T RS GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 178 EMNGVFCSTRPMRI 191
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
Score = 87 (35.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQG 291
+F+ NL + + L F FG I++ K+ +G GFV F + SAE AI M G
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
Query: 292 HMIGQQQV 299
+ +++
Sbjct: 152 MFLNYRKI 159
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 184 (69.8 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 50/163 (30%), Positives = 82/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI+I R+KIT + GY +V + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L F S + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIF-SAFGNI 116
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D G KGYGFV F + RA+ MNG+F + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYR 157
Score = 114 (45.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S++VGDL P+VT+ +L E F P + ++ D T RS GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 178 EMNGVFCSTRPMRI 191
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
Score = 87 (35.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQG 291
+F+ NL + + L F FG I++ K+ +G GFV F + SAE AI M G
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
Query: 292 HMIGQQQV 299
+ +++
Sbjct: 152 MFLNYRKI 159
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 205 (77.2 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 56/194 (28%), Positives = 98/194 (50%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E T+++G L + D+ +L F G +V ++I + +G+ +GYG+V+F + AA+
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
Query: 82 LQTYNGT--------------PMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPD 127
+ NGT P P Q + A G++ + P ++FVG+L+ +
Sbjct: 321 VAA-NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG-NFGDQLSE--PSDTVFVGNLSFN 376
Query: 128 VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
T+ L F ++ ++ TDP +GR KG+G+V F D + + + EMNG F + R
Sbjct: 377 ATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGR 434
Query: 188 PMRISAATPKKTTG 201
P R+ +TP+ G
Sbjct: 435 PCRLDFSTPRTGGG 448
Score = 200 (75.5 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 64/208 (30%), Positives = 104/208 (50%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171
D+ ++FVG L+ +V D L + F +Y ++ GA+V+ D +GRSKGYG+V F + E
Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFE-EYGTIVGARVIMDGQSGRSKGYGYVDF-ETPE 315
Query: 172 RNRAMTEMNGVF-CSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADND 230
+A NG R + + + P+ Q YA +A + + P+D
Sbjct: 316 AAKAAVAANGTKEIDGRMVNLDLSNPRPAN--PQPYAQQRA----GNFGDQLSE-PSD-- 366
Query: 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GR--GCGFVQFAARASAEE 284
T+FVGNL N TE++L F G+I ++++P GR G G+V F+ SA++
Sbjct: 367 ----TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 285 AILRMQGHMIGQQQVRISWGRKQDVTGS 312
+ M GH I + R+ + + GS
Sbjct: 423 CV-EMNGHFIAGRPCRLDFSTPRTGGGS 449
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 183 (69.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 50/163 (30%), Positives = 82/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI+I R+KIT + GY +V + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L F S + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIF-SAFGNI 116
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D G KGYGFV F + RA+ MNG+F + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDVMNGMFLNYR 157
Score = 114 (45.2 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S++VGDL P+VT+ +L E F P + ++ D T RS GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 178 EMNGVFCSTRPMRI 191
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
Score = 85 (35.0 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQG 291
+F+ NL + + L F FG I++ K+ +G GFV F + SAE AI M G
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
Query: 292 HMIGQQQV 299
+ +++
Sbjct: 152 MFLNYRKI 159
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 182 (69.1 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 49/163 (30%), Positives = 82/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+KIT + GY +V + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L F S + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIF-SAFGNI 116
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D G KGYGFV F + RA+ MNG+F + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYR 157
Score = 112 (44.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S++VGDL P+VT+ +L E F P + ++ D T RS GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 178 EMNGVFCSTRPMRI 191
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
Score = 87 (35.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQG 291
+F+ NL + + L F FG I++ K+ +G GFV F + SAE AI M G
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
Query: 292 HMIGQQQV 299
+ +++
Sbjct: 152 MFLNYRKI 159
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 116 (45.9 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
T+++G + DE + SCF G V +KII N+ TG +GYGFV FV+ ++++
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97
Score = 116 (45.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
T+++G + DE + SCF G V +KII N+ TG +GYGFV FV+ ++++
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262
Score = 90 (36.7 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
SAA P+ + A+ +++ +A + V P + NT +FVG +D + E E+
Sbjct: 332 SAANPETPNSTISREASTQSS---SAAASQGWVLPEGKIVPNT-VFVGGIDARMDETEIG 387
Query: 252 QTFLHFGEIVNVKIPMGR-----GCGFVQFAARASAEEAILRMQGHMIGQQ 297
F +G + VKI R G GFV F ++ I+ Q H G++
Sbjct: 388 SCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK-IVGSQIHFHGKK 437
Score = 90 (36.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
SAA P+ + A+ +++ +A + V P + NT +FVG +D + E E+
Sbjct: 167 SAANPETPNSTISREASTQSS---SAAASQGWVLPEGKIVPNT-VFVGGIDARMDETEIG 222
Query: 252 QTFLHFGEIVNVKIPMGR-----GCGFVQFAARASAEEAILRMQGHMIGQQ 297
F +G + VKI R G GFV F ++ I+ Q H G++
Sbjct: 223 SCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK-IVGSQIHFHGKK 272
Score = 88 (36.0 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
+++FVG + + + + F +Y SV+ K++T+ TG SKGYGFV F+++
Sbjct: 205 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITN-RTGVSKGYGFVSFVND 255
Score = 88 (36.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
+++FVG + + + + F +Y SV+ K++T+ TG SKGYGFV F+++
Sbjct: 370 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITN-RTGVSKGYGFVSFVND 420
Score = 88 (36.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
+++FVG + + + + F +Y SV+ K++T+ TG SKGYGFV F+++
Sbjct: 40 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITN-RTGVSKGYGFVSFVND 90
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 127 (49.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 39/158 (24%), Positives = 75/158 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L+IG + DE L F G++ + +++++ TG +G F+ + + +A + QT
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKA-QTA 107
Query: 85 -YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
+ +PG + ++ A E R G + +FVG L + ++ F S + S
Sbjct: 108 LHEQKTLPGMNRPIQVKPAD---SESR---GEDRKLFVGMLNKQQCEDDVRRLFES-FGS 160
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
+ ++ P+ G SKG FVK+ E A++ ++G
Sbjct: 161 IEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISALHG 197
Score = 124 (48.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 42/133 (31%), Positives = 61/133 (45%)
Query: 193 AATPKKTTGFQQQYAAVK--ATYPVAAYTTPVQVFPADNDIT---------NTTIFVGNL 241
A +P QQ YA V+ A +P AAY Q FP I +F+ +L
Sbjct: 384 AQSPTAADPLQQAYAGVQQYAAFP-AAYGQISQAFPQPPPIIPQQQREGPEGCNLFIYHL 442
Query: 242 DPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIG 295
+ EL Q FL FG +++ K+ + R C GFV F SA+ AI M G IG
Sbjct: 443 PQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIG 502
Query: 296 QQQVRISWGRKQD 308
+++++ R +D
Sbjct: 503 MKRLKVQLKRPKD 515
Score = 91 (37.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE ++F+ L + D L + F + +V +KV D T +SK +GFV F +
Sbjct: 431 GPEGCNLFIYHLPQEFGDGELMQMFLP-FGNVISSKVFVDRATNQSKCFGFVSFDNPGSA 489
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 490 QAAIQSMNGFQIGMKRLKVQLKRPK 514
Score = 79 (32.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E R L++G L E+ + F G + I+R G +G FV++ +HA A+
Sbjct: 133 EDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGP-DGNSKGCAFVKYSTHAEAQAA 191
Query: 82 LQTYNGTP-MPGTEQNFRLNWA 102
+ +G+ MPG + + +A
Sbjct: 192 ISALHGSQTMPGASSSLVVKFA 213
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 180 (68.4 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 47/163 (28%), Positives = 83/163 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E+ L F+ G ++SI++ R+K+T + GY +V + A+R L+T
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L F S + ++
Sbjct: 63 MNFDVING--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIF-SAFGNI 116
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
KV D G KGYGFV F + RA+ +NG+F + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDALNGMFLNYR 157
Score = 116 (45.9 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S++VGDL P+VT+ +L E F P + ++ D T RS GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGP-ILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 178 EMNGVFCSTRPMRI 191
MN + RP+RI
Sbjct: 62 TMNFDVINGRPVRI 75
Score = 84 (34.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQG 291
+F+ NL + + L F FG I++ K+ +G GFV F + SAE AI + G
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNG 151
Query: 292 HMIGQQQV 299
+ +++
Sbjct: 152 MFLNYRKI 159
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 196 (74.1 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 71/251 (28%), Positives = 117/251 (46%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ L S F+ GEV S K+IR+K+ G GYGFV +V+ AER + T NG + +
Sbjct: 33 QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KT 90
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A E DA ++++ L ++T +++ F S++ + ++V+ D TG
Sbjct: 91 IKVSYARPS-SEVIKDA----NLYISGLPRNMTQKDVEDMF-SRFGRIINSRVLVDQTTG 144
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATP---KKTTGFQQQYAAVK 210
S+G F++F +E A+T NG S+ P+ + AA P K Q Y +
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 204
Query: 211 ATY--PVAAYTTPVQVFP--AD------------NDITNTTIFVGNLDPNVTEEELKQTF 254
+ PV + P D N + IF+ NL + E L Q F
Sbjct: 205 RRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMF 264
Query: 255 LHFGEIVNVKI 265
FG + NVK+
Sbjct: 265 GPFGAVTNVKV 275
Score = 91 (37.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + ++
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 79 (32.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 186 (70.5 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 21 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 79
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 80 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 139
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 140 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 196
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 197 YVALAQRKEERQAHLTNQYMQRMASVRA 224
Score = 180 (68.4 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 50/197 (25%), Positives = 100/197 (50%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
++++ + D+ D L++ F P++ KV+TD +G+SKG+GFV F + +A+
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 82
Query: 178 EMNGVFCSTRPMRISAATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTT 235
EMNG + + + + A K + T ++++ +K + Y
Sbjct: 83 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR-ITRYQ-------------GVN 128
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQG 291
++V NLD + +E L++ F FG I + K+ M GR G GFV F++ A +A+ M G
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 188
Query: 292 HMIGQQQVRISWGRKQD 308
++ + + ++ ++++
Sbjct: 189 RIVATKPLYVALAQRKE 205
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 165 (63.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 48/188 (25%), Positives = 88/188 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL-QT 84
L++G + F+E + + F + + S+ +I+NK T +P+G FV S A+R + Q
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+N G N ++ +A E+ A +FVG L + ++E F + V
Sbjct: 65 HNSKKFQGVLNNLQVKYAD---SEQEKLAS---KLFVGMLPRSYEEEQIRELFEP-HGVV 117
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAATPKKTTGF 202
++ PN+ SKG GF+KF + A+ +NG+ S P+ + A +K
Sbjct: 118 EDICILRGPNS-ESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKKK 176
Query: 203 QQQYAAVK 210
+Q+ ++
Sbjct: 177 KQKQQQIQ 184
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 39/119 (32%), Positives = 64/119 (53%)
Query: 87 GTPMPGTEQNFRLNWASFG--IGEKRPDA-GPEHS-IFVGDLAPDVTDYLLQETFRSQYP 142
G PM G N + + G +G K+ + GP+ S +FV ++ +D L F+ QY
Sbjct: 370 GGPM-GNGMNNGMGGMNQGGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQ-QYG 427
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
V AKV D NTG SKG+GFV + + N A++ ++G + + +++S K+T+G
Sbjct: 428 IVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNLHGQMMAGKKLKVSL---KQTSG 483
Score = 80 (33.2 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEAIL 287
+ +FV N+ ++ +L F +G +V+ K+ + +G GFV + ASA AI
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 288 RMQGHMIGQQQVRIS 302
+ G M+ +++++S
Sbjct: 463 NLHGQMMAGKKLKVS 477
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 125 (49.1 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 41/187 (21%), Positives = 84/187 (44%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + DE L F G + + ++++++TG +G F+ + + +A +
Sbjct: 9 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A+ E R G + +FVG L + ++ F+ + +
Sbjct: 69 HEQKTLPGMNRPIQVKPAA---SEGR---GEDRKLFVGMLGKQQGEEDVRRLFQP-FGHI 121
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
V+ P+ G SKG FVKF + E A+ ++G T +R A + G
Sbjct: 122 EECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQSLHG--SRTMAVRAGARGQGEAGGVGP 178
Query: 205 QYAAVKA 211
+++ +A
Sbjct: 179 GFSSPRA 185
Score = 122 (48.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 41/133 (30%), Positives = 60/133 (45%)
Query: 193 AATPKKTTGFQQQYAAVK--ATYPVAAYTTPVQVFPADNDIT---------NTTIFVGNL 241
A +P QQ YA + A YP +AY FP + +F+ +L
Sbjct: 291 AQSPGVADPLQQAYAGMHHYAAYP-SAYAPVSTAFPQQSSALPQQQREGPEGCNLFIYHL 349
Query: 242 DPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIG 295
+ EL QTFL FG +V+ K+ + R C GFV F SA+ AI M G IG
Sbjct: 350 PQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIG 409
Query: 296 QQQVRISWGRKQD 308
+++++ R +D
Sbjct: 410 MKRLKVQLKRPKD 422
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 199 (75.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 72/299 (24%), Positives = 136/299 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D L F+ G+++S K+ ++ GQ + +GFV + + AAE ++
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENV 200
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHS-IFVGDLAPDVTDYLLQETFRSQYPSV 144
NG + E + + K + + I+V ++ + ++ ++ F S + +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLF-SPFGKI 259
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT--GF 202
+ D + G+SKG+GFV F D +A+ E+N + + + + A K+
Sbjct: 260 TSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEEL 318
Query: 203 QQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN 262
++QY AV+ +A Y +FV NLD + E+L++ F FG I +
Sbjct: 319 KKQYEAVRLE-KLAKYQ-------------GVNLFVKNLDDTIDSEKLEEEFKPFGTITS 364
Query: 263 VKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQ 316
K+ + +G GFV F A +AI M MI + + ++ +++DV S Q
Sbjct: 365 AKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQ 423
Score = 184 (69.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 49/193 (25%), Positives = 95/193 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +L++G+L +E L F+ G+V SI++ R+ ++ + GY +V + + E+
Sbjct: 49 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEK 108
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
++ N P+ G + R+ W+ +R G +IF+ +L P + + L +TF S
Sbjct: 109 AIEELNYNPIEG--RPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTF-SA 162
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ + KV TD G+SK +GFV + A+ +NG+ + R + + KK
Sbjct: 163 FGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDR 221
Query: 201 GFQQQYAAVKATY 213
+ ++ +KA +
Sbjct: 222 --ESKFEEMKANF 232
Score = 155 (59.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 51/192 (26%), Positives = 93/192 (48%)
Query: 30 DLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP 89
DL Y E F+ G++ SI + +++ G+ +G+GFV F H +A + ++ N
Sbjct: 241 DLNY--SEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 90 MPGTE--------QNFRLNWASFGIGEKRPDAGPEH---SIFVGDLAPDVTDYLLQETFR 138
+ G + + RL R + ++ ++FV +L + L+E F+
Sbjct: 298 INGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFK 357
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
+ ++ AKV+ D G+SKG+GFV F E +A+TEMN + +P+ ++ A K
Sbjct: 358 P-FGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKD 415
Query: 198 -KTTGFQQQYAA 208
+ + +QQ A
Sbjct: 416 VRRSQLEQQIQA 427
Score = 45 (20.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 366 DMAAVASALPTMEQR----EELYDPL-ATPDVDKLNAA 398
D+AA+ S++P +Q+ EELY + AT + AA
Sbjct: 540 DLAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAA 577
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 116 (45.9 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
T+++G + DE + SCF G V +KII N+ TG +GYGFV FV+ ++++
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97
Score = 116 (45.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
T+++G + DE + SCF G V +KII N+ TG +GYGFV FV+ ++++
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262
Score = 90 (36.7 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
SAA P+ + A+ +++ +A + V P + NT +FVG +D + E E+
Sbjct: 332 SAANPETPNSTISREASTQSS---SAAASQGWVLPEGKIVPNT-VFVGGIDARMDETEIG 387
Query: 252 QTFLHFGEIVNVKIPMGR-----GCGFVQFAARASAEEAILRMQGHMIGQQ 297
F +G + VKI R G GFV F ++ I+ Q H G++
Sbjct: 388 SCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK-IVGSQIHFHGKK 437
Score = 90 (36.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
SAA P+ + A+ +++ +A + V P + NT +FVG +D + E E+
Sbjct: 167 SAANPETPNSTISREASTQSS---SAAASQGWVLPEGKIVPNT-VFVGGIDARMDETEIG 222
Query: 252 QTFLHFGEIVNVKIPMGR-----GCGFVQFAARASAEEAILRMQGHMIGQQ 297
F +G + VKI R G GFV F ++ I+ Q H G++
Sbjct: 223 SCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK-IVGSQIHFHGKK 272
Score = 88 (36.0 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
+++FVG + + + + F +Y SV+ K++T+ TG SKGYGFV F+++
Sbjct: 205 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITN-RTGVSKGYGFVSFVND 255
Score = 88 (36.0 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
+++FVG + + + + F +Y SV+ K++T+ TG SKGYGFV F+++
Sbjct: 370 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITN-RTGVSKGYGFVSFVND 420
Score = 88 (36.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
+++FVG + + + + F +Y SV+ K++T+ TG SKGYGFV F+++
Sbjct: 40 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITN-RTGVSKGYGFVSFVND 90
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 197 (74.4 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 78/281 (27%), Positives = 126/281 (44%)
Query: 21 EEVRT-LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E+ +T L + L + L S F GE+ S K++R+KITGQ GYGFV ++ AE
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAE 123
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP--EHSIFVGDLAPDVTDYLLQETF 137
+ + T NG RL + + RP + + +++V L +T L++ F
Sbjct: 124 KAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 174
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT 195
SQ+ + ++++ D TG S+G GF++F E A+ +NG +T P+ + A
Sbjct: 175 -SQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 196 -PKKTTG---FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251
P + + Y + YP Q F DN + N V P +T + +
Sbjct: 234 NPSQKSSQALLSHLYQSPNRRYP-GPLAQQAQRFRLDN-LLNMAYGVKRFSP-MTIDGV- 289
Query: 252 QTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAILRMQG 291
T L G +N+ G G C FV A + E + +M G
Sbjct: 290 -TSLA-G--INLPAHAGTGWCIFVYNLAPDADENVLWQMFG 326
Score = 124 (48.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
AG IFV +LAPD + +L + F + +V KV+ D NT + KG+GFV + +E
Sbjct: 301 AGTGWCIFVYNLAPDADENVLWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 359
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ +NG R +++S T K
Sbjct: 360 AVAIASLNGYRLGDRVLQVSFKTNK 384
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 194 (73.4 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 71/251 (28%), Positives = 116/251 (46%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ L S F+ GEV S K+IR+K+ G GYGFV +V+ AER + T NG + +
Sbjct: 33 QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KT 90
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A E DA ++++ L +T +++ F S++ + ++V+ D TG
Sbjct: 91 IKVSYARPS-SEVIKDA----NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTG 144
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATP---KKTTGFQQQYAAVK 210
S+G F++F +E A+T NG S+ P+ + AA P K Q Y +
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 204
Query: 211 ATY--PVAAYTTPVQVFP--AD------------NDITNTTIFVGNLDPNVTEEELKQTF 254
+ PV + P D N + IF+ NL + E L Q F
Sbjct: 205 RRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMF 264
Query: 255 LHFGEIVNVKI 265
FG + NVK+
Sbjct: 265 GPFGAVTNVKV 275
Score = 93 (37.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + ++
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 79 (32.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 194 (73.4 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 71/251 (28%), Positives = 116/251 (46%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ L S F+ GEV S K+IR+K+ G GYGFV +V+ AER + T NG + +
Sbjct: 41 QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KT 98
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A E DA ++++ L +T +++ F S++ + ++V+ D TG
Sbjct: 99 IKVSYARPS-SEVIKDA----NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTG 152
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATP---KKTTGFQQQYAAVK 210
S+G F++F +E A+T NG S+ P+ + AA P K Q Y +
Sbjct: 153 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 212
Query: 211 ATY--PVAAYTTPVQVFP--AD------------NDITNTTIFVGNLDPNVTEEELKQTF 254
+ PV + P D N + IF+ NL + E L Q F
Sbjct: 213 RRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMF 272
Query: 255 LHFGEIVNVKI 265
FG + NVK+
Sbjct: 273 GPFGAVTNVKV 283
Score = 93 (37.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + ++
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 176 NGHKPPGSSEPITVKFAA 193
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 314 NGYRLGDKILQVSF 327
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 129 (50.5 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 39/157 (24%), Positives = 74/157 (47%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L+IG + +E L F G++ + +I++K TG +G F+ + + +A +
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R D +FVG L ++D +++ F + S+
Sbjct: 69 HEQKTLPGMNRPIQVKPAD---SEGRGD----RKLFVGMLGKQLSDADVRKMFEP-FGSI 120
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVK+ E A++ ++G
Sbjct: 121 EECTVLRGPD-GASKGCAFVKYQSNAEAQAAISALHG 156
Score = 116 (45.9 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRM 289
IF+ +L T+ E+ Q FL FG +++ K+ + R C GFV F ASA+ AI M
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 290 QGHMIGQQQVRISWGRKQD 308
G IG +++++ R +D
Sbjct: 429 NGFQIGMKRLKVQLKRPKD 447
Score = 97 (39.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE +IF+ L + TD + + F + +V AKV D T +SK +GFV F +
Sbjct: 363 GPEGCNIFIYHLPQEFTDSEMLQMFLP-FGNVISAKVFVDRATNQSKCFGFVSFDNPASA 421
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 422 QAAIQAMNGFQIGMKRLKVQLKRPK 446
Score = 66 (28.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/80 (22%), Positives = 37/80 (46%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
R L++G L + + F G + ++R G +G FV++ S+A A+ +
Sbjct: 94 RKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGP-DGASKGCAFVKYQSNAEAQAAIS 152
Query: 84 TYNGT-PMPGTEQNFRLNWA 102
+G+ +PG + + +A
Sbjct: 153 ALHGSRTLPGASSSLVVKFA 172
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 177 (67.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 49/194 (25%), Positives = 98/194 (50%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
++FV ++ D+ D L+E F +Y KV+ D + G+SKG+GFV++ +A+
Sbjct: 36 NVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVL 93
Query: 178 EMNGVFCSTRPMRISAATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTT 235
+++G + + + A K + ++++ ++ + + P V P
Sbjct: 94 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR----LKEKSRPPGV-P--------- 139
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQG 291
I++ NLD + +E+LK+ F FG I K+ M G+G G V F++ A +A+ M G
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 199
Query: 292 HMIGQQQVRISWGR 305
++G + + ++ G+
Sbjct: 200 RIVGSKPLHVTLGQ 213
Score = 167 (63.8 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 49/177 (27%), Positives = 87/177 (49%)
Query: 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-- 93
D+ L F G S+K+IR+ +G+ +G+GFV + +H AA++ + +G + G
Sbjct: 47 DDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 105
Query: 94 ---------EQ--NFRLNWASFGIGEK-RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
E+ R + + EK RP P I++ +L + D L+E F S +
Sbjct: 106 YVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP---IYIKNLDETINDEKLKEEF-SSF 161
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
S+ AKV+ + G+ KG+G V F E +A+ EMNG ++P+ ++ ++
Sbjct: 162 GSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 216
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 194 (73.4 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 71/251 (28%), Positives = 116/251 (46%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ L S F+ GEV S K+IR+K+ G GYGFV +V+ AER + T NG + +
Sbjct: 60 QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KT 117
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A E DA ++++ L +T +++ F S++ + ++V+ D TG
Sbjct: 118 IKVSYARPS-SEVIKDA----NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTG 171
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATP---KKTTGFQQQYAAVK 210
S+G F++F +E A+T NG S+ P+ + AA P K Q Y +
Sbjct: 172 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 231
Query: 211 ATY--PVAAYTTPVQVFP--AD------------NDITNTTIFVGNLDPNVTEEELKQTF 254
+ PV + P D N + IF+ NL + E L Q F
Sbjct: 232 RRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMF 291
Query: 255 LHFGEIVNVKI 265
FG + NVK+
Sbjct: 292 GPFGAVTNVKV 302
Score = 93 (37.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + ++
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 195 NGHKPPGSSEPITVKFAA 212
Score = 79 (32.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 333 NGYRLGDKILQVSF 346
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 124 (48.7 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 36/157 (22%), Positives = 73/157 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + DE L F G + + ++++++TG +G F+ + + +A +
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A+ E R G + +FVG L + ++ F+ + +
Sbjct: 108 HEQKTLPGMNRPIQVKPAA---SEGR---GEDRKLFVGMLGKQQGEEDVRRLFQP-FGHI 160
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVKF + E A+ ++G
Sbjct: 161 EECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQSLHG 196
Score = 121 (47.7 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 35/113 (30%), Positives = 52/113 (46%)
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
+ YA V T+P P Q +F+ +L + EL QTFL FG +V
Sbjct: 368 YPSAYAPVSTTFPQQPSALPQQQREGPE---GCNLFIYHLPQEFGDAELIQTFLPFGAVV 424
Query: 262 NVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + R C GFV F SA+ AI M G IG +++++ R +D
Sbjct: 425 SAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKD 477
Score = 97 (39.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE ++F+ L + D L +TF + +V AKV D T +SK +GFV F +
Sbjct: 393 GPEGCNLFIYHLPQEFGDAELIQTFLP-FGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA 451
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 452 QTAIQAMNGFQIGMKRLKVQLKRPK 476
Score = 64 (27.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E R L++G L E + F G + ++R+ G +G FV+F S A+
Sbjct: 132 EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKFGSQGEAQAA 190
Query: 82 LQTYNGT-PMPGTEQN 96
+Q+ +G+ M G +
Sbjct: 191 IQSLHGSRTMAGASSS 206
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 386 PLATPDV-DKLNAAYLSIHGNAILGRTLWLKTSSLTPQ 422
P +P V D L AY +H A + + S+ PQ
Sbjct: 344 PAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTTFPQ 381
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 192 (72.6 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 70/248 (28%), Positives = 114/248 (45%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99
L S F+ GEV S K+IR+K+ G GYGFV +V+ AER + T NG + + ++
Sbjct: 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS--KTIKV 93
Query: 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
++A E DA ++++ L +T +++ F S++ + ++V+ D TG S+
Sbjct: 94 SYARPS-SEVIKDA----NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSR 147
Query: 160 GYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATPKKTTGF---QQQYAAVKATY 213
G F++F +E A+T NG S+ P+ + AA P + Q Y + +
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRF 207
Query: 214 --PVAAYTTPVQVFPADND----ITNTT----------IFVGNLDPNVTEEELKQTFLHF 257
PV + P D I+ IF+ NL + E L Q F F
Sbjct: 208 GGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF 267
Query: 258 GEIVNVKI 265
G + NVK+
Sbjct: 268 GAVTNVKV 275
Score = 93 (37.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + ++
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 79 (32.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 306 NGYRLGDKILQVSF 319
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 192 (72.6 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 70/248 (28%), Positives = 114/248 (45%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99
L S F+ GEV S K+IR+K+ G GYGFV +V+ AER + T NG + + ++
Sbjct: 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS--KTIKV 93
Query: 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
++A E DA ++++ L +T +++ F S++ + ++V+ D TG S+
Sbjct: 94 SYARPS-SEVIKDA----NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSR 147
Query: 160 GYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATPKKTTGF---QQQYAAVKATY 213
G F++F +E A+T NG S+ P+ + AA P + Q Y + +
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRF 207
Query: 214 --PVAAYTTPVQVFPADND----ITNTT----------IFVGNLDPNVTEEELKQTFLHF 257
PV + P D I+ IF+ NL + E L Q F F
Sbjct: 208 GGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF 267
Query: 258 GEIVNVKI 265
G + NVK+
Sbjct: 268 GAVTNVKV 275
Score = 93 (37.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + ++
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 79 (32.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 190 (71.9 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 58/183 (31%), Positives = 84/183 (45%)
Query: 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
L E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 107 LGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAK 162
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 163 EALNSCNKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFDG 219
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
SVR A++VTD TG SKG+GFV F E + A M + + A PK
Sbjct: 220 ---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 275
Query: 200 TGF 202
GF
Sbjct: 276 GGF 278
Score = 80 (33.2 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 198 TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 257
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 258 GEIDGNKVTLDWAKPKGEGG 277
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 23/92 (25%), Positives = 40/92 (43%)
Query: 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERN 173
G ++ + +L+ T+ LQE F KV + N G+SKGY F++F +
Sbjct: 108 GESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQN-GKSKGYAFIEFASFEDAK 162
Query: 174 RAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ 205
A+ N R +R+ P+ + + Q
Sbjct: 163 EALNSCNKREIEGRAIRLELQGPRGSPNARSQ 194
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 31 LQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90
L Y ++ L F E I+++ G+ +G ++EF + A AE+ + GT +
Sbjct: 1 LPYKVTQDELKEVFEDAAE---IRLVSKD--GKSKGIAYIEFKTEADAEKTFEEKQGTEI 55
Query: 91 PG 92
G
Sbjct: 56 DG 57
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 192 (72.6 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 59/202 (29%), Positives = 94/202 (46%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G+L ++ L G VV+I I R+++ G+GF EF+ E Q
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS G ++FVG+L P V + +L +TF + V
Sbjct: 72 LNQVKLFG--KPIRVNRASQDRGVNTLIGA---NLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ +V D N GRSKGYGFV + + A+ MN F +P+ +S A ++ G ++
Sbjct: 127 KAPQVARDEN-GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKG-ER 184
Query: 205 QYAAVKATYPVAAYTTPVQVFP 226
+ AA V V P
Sbjct: 185 HGDIAERKLAAAAKKNKVAVTP 206
Score = 105 (42.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 35/108 (32%), Positives = 52/108 (48%)
Query: 215 VAAYTTPVQVFPADNDI-TNTTI----FVGNLDPNVTEEELKQTFLHFGEIVNV----KI 265
V + P++V A D NT I FVGNLDP V E L TF G++V +
Sbjct: 75 VKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD 134
Query: 266 PMGR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
GR G GFV + + +A+ AI M + + + +S+ K++ G
Sbjct: 135 ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKG 182
Score = 88 (36.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
R D + +I++G+L VTD +L E P V + D G+GF +FL E
Sbjct: 4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVN-IHIPRDRVRNSHNGFGFCEFLHE 62
Query: 170 NERNRAMTEMNGVFCSTRPMRISAAT 195
+ A +N V +P+R++ A+
Sbjct: 63 QDVEYACQILNQVKLFGKPIRVNRAS 88
>WB|WBGene00011589 [details] [associations]
symbol:T07F10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00510000047100 EMBL:Z77669 PIR:T24666
RefSeq:NP_506222.2 ProteinModelPortal:Q22318 SMR:Q22318
STRING:Q22318 PaxDb:Q22318 EnsemblMetazoa:T07F10.3 GeneID:179765
KEGG:cel:CELE_T07F10.3 UCSC:T07F10.3 CTD:179765 WormBase:T07F10.3
HOGENOM:HOG000018915 InParanoid:Q22318 OMA:CFANDSY NextBio:906768
Uniprot:Q22318
Length = 371
Score = 192 (72.6 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 52/157 (33%), Positives = 81/157 (51%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
RTLWIGD+ + E LS F G K+ R + + +GY F+EF++ A + L
Sbjct: 68 RTLWIGDVPTDWTEETLSQVFTECGHA-PYKVKRVYVKDELKGYCFIEFITFDEARQTLY 126
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
NG +PG + + R N F P++ E ++ V + D+ D L F +Y S
Sbjct: 127 DLNGNRIPGFK-DIRFNLC-FANDSYNPNS--EFNLHVSSVPDDMADAELYRIF-DKYQS 181
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180
RGAK+ + G SKG GFV+F ++ ++ A+ EM+
Sbjct: 182 CRGAKMFRFVD-GSSKGSGFVRFGNQTDQQMALVEMH 217
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 70/248 (28%), Positives = 113/248 (45%)
Query: 40 LSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99
L S F+ GE+ S K+IR+K+ G GYGFV +V+ AER + T NG + + ++
Sbjct: 36 LRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKV 93
Query: 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159
++A E DA ++++ L +T +++ F S + + ++V+ D TG S+
Sbjct: 94 SYARPS-SEVIKDA----NLYISGLPRTMTQKDVEDMF-SPFGRIINSRVLVDQTTGLSR 147
Query: 160 GYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATP---KKTTGFQQQYAAVKATY 213
G F++F +E A+T NG S+ P+ + AA P K Q Y + +
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRF 207
Query: 214 --PVAAYTTPVQVFP--AD------------NDITNTTIFVGNLDPNVTEEELKQTFLHF 257
PV + P D N + IF+ NL + E L Q F F
Sbjct: 208 GGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPF 267
Query: 258 GEIVNVKI 265
G + NVK+
Sbjct: 268 GAVTNVKV 275
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 40/157 (25%), Positives = 70/157 (44%)
Query: 47 TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASF-- 104
+ E +++K N Q + + + H+ A R G P+ Q FR +
Sbjct: 175 SSEPITVKFAANP--NQNKNVALLSQLYHSPARRF-----GGPVHHQAQRFRFSPMGVDH 227
Query: 105 --GI-GEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKG 160
G+ G P +A IF+ +L D + +L + F + +V KV+ D NT + KG
Sbjct: 228 MSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKG 286
Query: 161 YGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+GFV + E + A+ +NG + +++S T K
Sbjct: 287 FGFVTMTNYEEASMAIASLNGYRLGDKILQVSFKTNK 323
Score = 91 (37.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + ++
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 80 (33.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 71/251 (28%), Positives = 114/251 (45%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ L S F+ GEV S K+IR+K+ G GYGFV +V+ AER + T NG + +
Sbjct: 33 QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KT 90
Query: 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156
++++A E DA ++++ L +T +++ F S++ + ++V+ D TG
Sbjct: 91 IKVSYARPS-SEVIKDA----NLYISGLPRSMTQKDVEDMF-SRFGRIINSRVLVDQTTG 144
Query: 157 RSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATPK--KTTGFQQQYAAVKA 211
S+G F++F +E A+T NG S+ P+ + AA P K Q A
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLCHSPA 204
Query: 212 TY---PVAAYTTPVQVFP--AD------------NDITNTTIFVGNLDPNVTEEELKQTF 254
PV + P D N + IF+ NL + E L Q F
Sbjct: 205 RRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMF 264
Query: 255 LHFGEIVNVKI 265
FG + NVK+
Sbjct: 265 GPFGAVTNVKV 275
Score = 91 (37.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F+ G +++ +++ ++ TG G F+ F + AE + +
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG+ + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 79 (32.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRM 289
IF+ NL + E L Q F FG + NVK+ +G GFV A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 290 QGHMIGQQQVRISW 303
G+ +G + +++S+
Sbjct: 306 NGYRLGDKILQVSF 319
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 195 (73.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 52/173 (30%), Positives = 89/173 (51%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL +E+ L F+ G V+SI++ R+ T GY +V F A AER + T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ +R AG +IF+ +L + + + +TF S + ++
Sbjct: 93 MNFEALHG--KPMRIMWSQRDPAMRRSGAG---NIFIKNLDKVIDNKSIYDTF-SLFGNI 146
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
KV D + G SKGYGFV F E A+ ++NG+ + + + + P+
Sbjct: 147 LSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 198
Score = 187 (70.9 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 70/300 (23%), Positives = 136/300 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
++I +L D + F+ G ++S K+ ++ G +GYGFV F + AA+ +Q
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFR---SQYP 142
NG + G ++ F + ++ + G F + D+ +ET +++
Sbjct: 181 NGMLLAG-KKVFVGKFQPRA--QRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFG 237
Query: 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202
++ +V+T G+SKG+GFV F + E A+ ++ +++ +K +
Sbjct: 238 NITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKS-- 293
Query: 203 QQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN 262
+++A +K + +Q + N ++V NLD V ++ LK+ F +G I +
Sbjct: 294 -ERHAELKKKHEQHK-AERMQKYQGVN------LYVKNLDETVDDDGLKKQFESYGNITS 345
Query: 263 VKIPM---GR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQDVTGSVAAQ 316
K+ GR G GFV F A A+ M M+ + + ++ RK+D +A+Q
Sbjct: 346 AKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQ 405
Score = 185 (70.2 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 60/230 (26%), Positives = 110/230 (47%)
Query: 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAA 78
T ++ +++ + +++ L FA G + S +++ + G+ +G+GFV F + A
Sbjct: 208 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEA 265
Query: 79 ERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--------------SIFVGDL 124
E +Q + + + GT+ + A E+ + +H +++V +L
Sbjct: 266 ETAVQALHDSTIEGTDLKLHVCRAQKK-SERHAELKKKHEQHKAERMQKYQGVNLYVKNL 324
Query: 125 APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184
V D L++ F S Y ++ AKV+TD N GRSKG+GFV F E A+TEMN
Sbjct: 325 DETVDDDGLKKQFES-YGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Query: 185 STRPMRISAATPKK------TTGFQQQYAAVK--ATYPVAAYTTPVQVFP 226
++P+ ++ A K+ + + Q+ A+++ P AA P Q P
Sbjct: 383 CSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGP 432
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 191 (72.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L + L ++ + S F GEV S K+IR+K+TGQ GYGFV +V AE+ +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 86 NGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145
NG + QN + I ++ +++V L ++T L+ F S Y +
Sbjct: 172 NGLRL----QNKTIK---VSIARPSSESIKGANLYVSGLPKNMTQSDLESLF-SPYGKII 223
Query: 146 GAKVVTDPNTGR-----SKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRISAAT-PK 197
++++ D TG SKG GF++F E +RA+ E+NG ST P+ + A P
Sbjct: 224 TSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPS 283
Query: 198 KTTGFQQQYAAVKATYPVAAYTTPVQVFPAD 228
Q AA Y T + FPA+
Sbjct: 284 SNKNSMQPLAA----YIAPQNTRGGRAFPAN 310
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 124 (48.7 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + +E L F G + + +I++K TG +G F+ + + +A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R G + +FVG L TD +++ F + ++
Sbjct: 69 HEQKTLPGMNRPIQVKPAD---SESR---GEDRKLFVGMLGKQQTDEDVRKMFEP-FGTI 121
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180
V+ P+ G SKG FVKF E A+ ++
Sbjct: 122 DECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 113 (44.8 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRM 289
IF+ +L T+ E+ Q F+ FG +++ K+ + R C GFV F ASA+ AI M
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 290 QGHMIGQQQVRISWGRKQD 308
G IG +++++ R +D
Sbjct: 392 NGFQIGMKRLKVQLKRPKD 410
Score = 92 (37.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GP+ +IF+ L + TD + + F + V AKV D T +SK +GFV F +
Sbjct: 326 GPDGCNIFIYHLPQEFTDSEILQMF-VPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 384
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 385 QAAIQAMNGFQIGMKRLKVQLKRPK 409
Score = 72 (30.4 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 22 EVRTLWIGDL-QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E R L++G L + DE+ + F G + ++R G +G FV+F +HA A+
Sbjct: 93 EDRKLFVGMLGKQQTDED-VRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
Query: 81 VLQT-YNGTPMPGTEQNFRLNWA 102
+ T ++ +PG + + +A
Sbjct: 151 AINTLHSSRTLPGASSSLVVKFA 173
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 122 (48.0 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 36/157 (22%), Positives = 73/157 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + DE L F G + + ++++++TG +G F+ + + +A +
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A+ E R G + +FVG L + ++ F+ + +
Sbjct: 108 HEQKTLPGMNRPIQVKPAA---SEGR---GEDRKLFVGMLGKQQGEEDVRRLFQP-FGHI 160
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVKF + E A+ ++G
Sbjct: 161 EECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQGLHG 196
Score = 116 (45.9 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 34/113 (30%), Positives = 51/113 (45%)
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
+ YA V +P P Q +F+ +L + EL QTFL FG +V
Sbjct: 346 YPSAYAPVSTAFPQQPSALPQQQREGPE---GCNLFIYHLPQEFGDAELIQTFLPFGAVV 402
Query: 262 NVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + R C GFV F SA+ AI M G IG +++++ R +D
Sbjct: 403 SAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKD 455
Score = 97 (39.2 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE ++F+ L + D L +TF + +V AKV D T +SK +GFV F +
Sbjct: 371 GPEGCNLFIYHLPQEFGDAELIQTFLP-FGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA 429
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 430 QTAIQAMNGFQIGMKRLKVQLKRPK 454
Score = 61 (26.5 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E R L++G L E + F G + ++R+ G +G FV+F S A+
Sbjct: 132 EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKFGSQGEAQAA 190
Query: 82 LQTYNGT-PMPGTEQN 96
+Q +G+ M G +
Sbjct: 191 IQGLHGSRTMTGASSS 206
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 191 (72.3 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 59/201 (29%), Positives = 98/201 (48%)
Query: 109 KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLD 168
K ++ ++FVG+L+ +V D +L E F+ +V A+V+TD +GRSKG+G+V F
Sbjct: 231 KTEESDKPSTLFVGNLSWNVDDAMLAEEFKF-CGTVTSARVITDRESGRSKGFGYVDFAT 289
Query: 169 ENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPAD 228
E +A E G F R +++ +T K T A K Y V P +
Sbjct: 290 PEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKK------YGDTVS--P-E 340
Query: 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GR--GCGFVQFAARASA 282
+D T+FVGNL + E+ + F E+ ++++P GR G G+V F + A
Sbjct: 341 SD----TLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDA 396
Query: 283 EEAILRMQGHMIGQQQVRISW 303
+ A ++ G I + R+ +
Sbjct: 397 KSAFEQLNGQSINGRNCRLDY 417
Score = 178 (67.7 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 51/183 (27%), Positives = 93/183 (50%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
TL++G+L + D+ L+ F G V S ++I ++ +G+ +G+G+V+F + AE+
Sbjct: 240 TLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGE 299
Query: 85 YNGTPMPGTE--QNFRL------NWASFGIGEKRPDA-GPEH-SIFVGDLAPDVTDYLLQ 134
G + G E +F N A+ +K D PE ++FVG+L D + +
Sbjct: 300 KQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVG 359
Query: 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194
F S+ V+ ++ T+ +GR KG+G+V F + A ++NG + R R+ +
Sbjct: 360 AFF-SEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYS 418
Query: 195 TPK 197
TP+
Sbjct: 419 TPR 421
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 122 (48.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 36/157 (22%), Positives = 73/157 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + DE L F G + + ++++++TG +G F+ + + +A +
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A+ E R G + +FVG L + ++ F+ + +
Sbjct: 108 HEQKTLPGMNRPIQVKPAA---SEGR---GEDRKLFVGMLGKQQGEEDVRRLFQP-FGHI 160
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVKF + E A+ ++G
Sbjct: 161 EECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIRGLHG 196
Score = 116 (45.9 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 34/113 (30%), Positives = 51/113 (45%)
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
+ YA V +P P Q +F+ +L + EL QTFL FG +V
Sbjct: 367 YPSAYAPVSTAFPQQPSALPQQQREGPE---GCNLFIYHLPQEFGDAELIQTFLPFGAVV 423
Query: 262 NVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + R C GFV F SA+ AI M G IG +++++ R +D
Sbjct: 424 SAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKD 476
Score = 57 (25.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E R L++G L E + F G + ++R+ G +G FV+F S A+
Sbjct: 132 EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKFGSQGEAQAA 190
Query: 82 LQTYNGT-PMPGTEQN 96
++ +G+ M G +
Sbjct: 191 IRGLHGSRTMAGASSS 206
Score = 41 (19.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 386 PLATPDV-DKLNAAYLSIHGNAILGRTLWLKTSSLTPQ 422
P +P V D L AY +H A + + S+ PQ
Sbjct: 343 PAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTAFPQ 380
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 124 (48.7 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + +E L F G + + +I++K TG +G F+ + + +A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R G + +FVG L TD +++ F + ++
Sbjct: 69 HEQKTLPGMNRPIQVKPAD---SESR---GEDRKLFVGMLGKQQTDEDVRKMFEP-FGTI 121
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180
V+ P+ G SKG FVKF E A+ ++
Sbjct: 122 DECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 113 (44.8 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRM 289
IF+ +L T+ E+ Q F+ FG +++ K+ + R C GFV F ASA+ AI M
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 290 QGHMIGQQQVRISWGRKQD 308
G IG +++++ R +D
Sbjct: 438 NGFQIGMKRLKVQLKRPKD 456
Score = 92 (37.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GP+ +IF+ L + TD + + F + V AKV D T +SK +GFV F +
Sbjct: 372 GPDGCNIFIYHLPQEFTDSEILQMF-VPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 430
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 431 QAAIQAMNGFQIGMKRLKVQLKRPK 455
Score = 72 (30.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 22 EVRTLWIGDL-QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E R L++G L + DE+ + F G + ++R G +G FV+F +HA A+
Sbjct: 93 EDRKLFVGMLGKQQTDED-VRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
Query: 81 VLQT-YNGTPMPGTEQNFRLNWA 102
+ T ++ +PG + + +A
Sbjct: 151 AINTLHSSRTLPGASSSLVVKFA 173
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 124 (48.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + +E L F G + + +I++K TG +G F+ + + +A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R G + +FVG L TD +++ F + ++
Sbjct: 69 HEQKTLPGMNRPIQVKPAD---SESR---GEDRKLFVGMLGKQQTDEDVRKMFEP-FGTI 121
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180
V+ P+ G SKG FVKF E A+ ++
Sbjct: 122 DECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 113 (44.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRM 289
IF+ +L T+ E+ Q F+ FG +++ K+ + R C GFV F ASA+ AI M
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 290 QGHMIGQQQVRISWGRKQD 308
G IG +++++ R +D
Sbjct: 442 NGFQIGMKRLKVQLKRPKD 460
Score = 92 (37.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GP+ +IF+ L + TD + + F + V AKV D T +SK +GFV F +
Sbjct: 376 GPDGCNIFIYHLPQEFTDSEILQMF-VPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 434
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 435 QAAIQAMNGFQIGMKRLKVQLKRPK 459
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 22 EVRTLWIGDL-QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E R L++G L + DE+ + F G + ++R G +G FV+F +HA A+
Sbjct: 93 EDRKLFVGMLGKQQTDED-VRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
Query: 81 VLQT-YNGTPMPGTEQNFRLNWA 102
+ T ++ +PG + + +A
Sbjct: 151 AINTLHSSRTLPGASSSLVVKFA 173
>POMBASE|SPBC1289.12 [details] [associations]
symbol:usp109 "U1 snRNP-associated protein Usp109"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC1289.12 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 PIR:T39363 RefSeq:NP_596836.2
GeneID:2540117 OrthoDB:EOG4HX8B5 NextBio:20801253 Uniprot:O94621
Length = 365
Score = 187 (70.9 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 53/190 (27%), Positives = 89/190 (46%)
Query: 117 HSIFVGDLAPDVTDYLLQETF-RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRA 175
+ +F+ ++ P+V++ ++ F R + S R + V G S F+ +E++ A
Sbjct: 86 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVD----GTSTSIAFIWLANESDIQNA 141
Query: 176 MTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTT 235
EM G FC R + + + K T Y + Y P+ F D NT
Sbjct: 142 QVEMQGAFCLKRSILVHSVKSDKNT-----YLSSPGFYGTPQ---PLNQF---TDPNNTA 190
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIG 295
++V L N+T +EL+ FLHFGEI+ ++ G + FA R AE+AI M +
Sbjct: 191 VYVHQLPENITTQELRSYFLHFGEILYTQV--NNNSGRIVFAQRYFAEQAINEMNNFPLH 248
Query: 296 QQQVRISWGR 305
++++SW R
Sbjct: 249 GVRIQLSWAR 258
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 124 (48.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 36/157 (22%), Positives = 73/157 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + DE L F G + + ++++++TG +G F+ + + +A +
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A+ E R G + +FVG L + ++ F+ + +
Sbjct: 108 HEQKTLPGMNRPIQVKPAA---SEGR---GEDRKLFVGMLGKQQGEEDVRRLFQP-FGHI 160
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVKF + E A+ ++G
Sbjct: 161 EECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQSLHG 196
Score = 113 (44.8 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 34/113 (30%), Positives = 51/113 (45%)
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
+ YA V T+ P Q +F+ +L + EL QTFL FG +V
Sbjct: 368 YPSAYAPVSTTFSQQPSALPQQQREGPE---GCNLFIYHLPQEFGDAELIQTFLPFGAVV 424
Query: 262 NVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
+ K+ + R C GFV F SA+ AI M G IG +++++ R +D
Sbjct: 425 SAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKD 477
Score = 97 (39.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE ++F+ L + D L +TF + +V AKV D T +SK +GFV F +
Sbjct: 393 GPEGCNLFIYHLPQEFGDAELIQTFLP-FGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA 451
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 452 QTAIQAMNGFQIGMKRLKVQLKRPK 476
Score = 64 (27.6 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E R L++G L E + F G + ++R+ G +G FV+F S A+
Sbjct: 132 EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKFGSQGEAQAA 190
Query: 82 LQTYNGT-PMPGTEQN 96
+Q+ +G+ M G +
Sbjct: 191 IQSLHGSRTMAGASSS 206
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 124 (48.7 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + +E L F G + + +I++K TG +G F+ + + +A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R G + +FVG L TD +++ F + ++
Sbjct: 69 HEQKTLPGMNRPIQVKPAD---SESR---GEDRKLFVGMLGKQQTDEDVRKMFEP-FGTI 121
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180
V+ P+ G SKG FVKF E A+ ++
Sbjct: 122 DECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 113 (44.8 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRM 289
IF+ +L T+ E+ Q F+ FG +++ K+ + R C GFV F ASA+ AI M
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470
Query: 290 QGHMIGQQQVRISWGRKQD 308
G IG +++++ R +D
Sbjct: 471 NGFQIGMKRLKVQLKRPKD 489
Score = 93 (37.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167
++RPD +IF+ L + TD + + F + V AKV D T +SK +GFV F
Sbjct: 403 QQRPDGC---NIFIYHLPQEFTDSEILQMF-VPFGHVISAKVFVDRATNQSKCFGFVSFD 458
Query: 168 DENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ A+ MNG + +++ PK
Sbjct: 459 NPASAQAAIQAMNGFQIGMKRLKVQLKRPK 488
Score = 72 (30.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 22 EVRTLWIGDL-QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E R L++G L + DE+ + F G + ++R G +G FV+F +HA A+
Sbjct: 93 EDRKLFVGMLGKQQTDED-VRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
Query: 81 VLQT-YNGTPMPGTEQNFRLNWA 102
+ T ++ +PG + + +A
Sbjct: 151 AINTLHSSRTLPGASSSLVVKFA 173
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 192 (72.6 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 56/181 (30%), Positives = 92/181 (50%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+ L + +L + E+ L S F + VSI+I +N G+P+GY FVEF + ++ L+
Sbjct: 468 KVLVVNNLAFSASEDSLQSVFE---KAVSIRIPQNN--GRPKGYAFVEFENVEDSKEALE 522
Query: 84 TYNGTPMPGTEQNFRLNWASFGI---GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
N T + G ++ RL ++ G R ++GP ++FV L+ D TD L+++F
Sbjct: 523 NCNNTDIEG--RSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSFDGA 580
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
A++ TD +TG SKG+GFV F +E + A M+ + + A PK
Sbjct: 581 I----AARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYAKPKGEG 636
Query: 201 G 201
G
Sbjct: 637 G 637
Score = 129 (50.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 47/182 (25%), Positives = 79/182 (43%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ RTL++ +L Y ++ L F + V I++ TG G ++EF + A AE+
Sbjct: 378 DARTLFVKNLPYSITQDDLREIF---DQAVDIRVPMGN-TGTSRGIAYIEFKTEAIAEKA 433
Query: 82 LQTYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
L+ G+ + G +F + + G G P A + V +LA ++ LQ F
Sbjct: 434 LEEAQGSDVQGRSIIVDFTGDKSRQG-GRGAPSASKV--LVVNNLAFSASEDSLQSVFEK 490
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
S+R N GR KGY FV+F + + A+ N R +R+ + +
Sbjct: 491 AV-SIR-----IPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRE 544
Query: 200 TG 201
G
Sbjct: 545 RG 546
Score = 98 (39.6 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRM 289
T+FV NL ++T+++L++ F + V++++PMG RG +++F A AE+A+
Sbjct: 381 TLFVKNLPYSITQDDLREIF---DQAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEEA 437
Query: 290 QG 291
QG
Sbjct: 438 QG 439
Score = 84 (34.6 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167
+K G S+F+G+L + D+ ++ S++ S G ++ D G +K +G+V F
Sbjct: 281 KKAKTDGEGFSLFLGNLNNN-KDFDELKSAISKFFSKEGLEI-QDVRLGGTKKFGYVDFA 338
Query: 168 DENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
E E +A+ E+NG +P+++ A K+ +
Sbjct: 339 SEEELQKAL-ELNGKKLLGQPVKLDKARSKENS 370
Score = 48 (22.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 22/83 (26%), Positives = 34/83 (40%)
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARASAEEAILR 288
T+FV L + T++ LK +F G I +I R G GFV F + A
Sbjct: 558 TLFVKGLSDDTTDQTLKDSF--DGAIA-ARIATDRDTGSSKGFGFVDFDNEQDCKAAKEA 614
Query: 289 MQGHMIGQQQVRISWGRKQDVTG 311
M I +V + + + + G
Sbjct: 615 MDDGEIDGNKVTLDYAKPKGEGG 637
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 187 (70.9 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 41/93 (44%), Positives = 56/93 (60%)
Query: 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRS 158
++W + E D + IF GDL +V D +L F S+YPS AKVV D TG++
Sbjct: 288 VSWEDTSLLEWETD---DFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKT 343
Query: 159 KGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191
KGYGFV F D N+ RAM EMNG + +RP+++
Sbjct: 344 KGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL 376
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 185 (70.2 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 71/254 (27%), Positives = 115/254 (45%)
Query: 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96
++ L S F+ GEV S K+IR+K+ G GYGFV +++ AER + T NG
Sbjct: 47 QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNG--------- 97
Query: 97 FRLNWASFGIGEKRP--DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN 154
RL + + RP D+ + ++++ L +T ++E F +Y + ++V+ D
Sbjct: 98 LRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMF-GRYGRIINSRVLVDQA 156
Query: 155 TGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPMRIS-AATP---KKTTGFQQQYAA 208
+G S+G F++F E A+ ++NG + M + AA+P K T Q Y
Sbjct: 157 SGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQVIPQVYHQ 216
Query: 209 VKATY--PVAAYT-----TPVQV----------FPADNDITNTTIFVGNLDPNVTEEELK 251
+ PV +P+ V P N + IF+ NL + E L
Sbjct: 217 QSRRFGGPVHHQAQRFRFSPMSVDHMSGMSGVNVPG-NSSSGWCIFIYNLGQDADEGILW 275
Query: 252 QTFLHFGEIVNVKI 265
Q F FG + NVK+
Sbjct: 276 QMFGPFGAVTNVKV 289
Score = 103 (41.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178
IF+ +L D + +L + F + +V KV+ D NT + KG+GFV E A+
Sbjct: 260 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIAS 318
Query: 179 MNGVFCSTRPMRISAATPK 197
+NG + +++S T K
Sbjct: 319 LNGYRLGDKILQVSFKTSK 337
Score = 86 (35.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85
L+I L + + F G +++ +++ ++ +G G F+ F A AE ++
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 86 NGTPMPGTEQNFRLNWAS 103
NG PG + + +A+
Sbjct: 182 NGQKPPGAAEQMTVKFAA 199
Score = 81 (33.6 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASA 282
N + IF+ NL + E L Q F FG + NVK+ +G GFV A
Sbjct: 253 NSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEA 312
Query: 283 EEAILRMQGHMIGQQQVRISW 303
AI + G+ +G + +++S+
Sbjct: 313 AMAIASLNGYRLGDKILQVSF 333
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 188 (71.2 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 64/230 (27%), Positives = 108/230 (46%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
TL+I +L DE L F G V ++ I R+KI G GYGFVE+ E
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
N T + G + R N A+ +KR D G ++F+G+L +V + +L + F S +
Sbjct: 81 LNMTKLFG--KALRCNKAT---QDKRSFDVGA--NLFIGNLDDEVDEKMLFDIF-SSFGQ 132
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
+ KV+ + + SKG+GF+ + + + A+ MN F + + IS A K + G +
Sbjct: 133 IMTVKVMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGER 191
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQT 253
AA + +AA + ++P + + N + N P + ++ T
Sbjct: 192 HGTAAERF---IAA-NKALNLYPLNENNNNNNV---NPSPFTSSNDIPLT 234
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 188 (71.2 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 64/230 (27%), Positives = 108/230 (46%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
TL+I +L DE L F G V ++ I R+KI G GYGFVE+ E
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
N T + G + R N A+ +KR D G ++F+G+L +V + +L + F S +
Sbjct: 81 LNMTKLFG--KALRCNKAT---QDKRSFDVGA--NLFIGNLDDEVDEKMLFDIF-SSFGQ 132
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
+ KV+ + + SKG+GF+ + + + A+ MN F + + IS A K + G +
Sbjct: 133 IMTVKVMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGER 191
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQT 253
AA + +AA + ++P + + N + N P + ++ T
Sbjct: 192 HGTAAERF---IAA-NKALNLYPLNENNNNNNV---NPSPFTSSNDIPLT 234
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 166 (63.5 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 111 PDAGPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
P+ P+H +FVG+L PD D LL+E F S+YPS+ V D T ++KG+GFV F
Sbjct: 49 PNWNPKHFRLFVGNLGPDGNDELLKEAF-SKYPSMSQVHVPIDRKTSKNKGFGFVAFGKS 107
Query: 170 NERNRAMTEMNGVFCSTRPMRISAA---TPKKT 199
+ A EMNG + P+++ A PKKT
Sbjct: 108 EDYLHAFQEMNGKYIGQHPVQLKRAESSVPKKT 140
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 166 (63.5 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 111 PDAGPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169
P+ P+H +FVG+L PD D LL+E F S+YPS+ V D T ++KG+GFV F
Sbjct: 49 PNWNPKHFRLFVGNLGPDGNDELLKEAF-SKYPSMSQVHVPIDRKTSKNKGFGFVAFGKS 107
Query: 170 NERNRAMTEMNGVFCSTRPMRISAA---TPKKT 199
+ A EMNG + P+++ A PKKT
Sbjct: 108 EDYLHAFQEMNGKYIGQHPVQLKRAESSVPKKT 140
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 122 (48.0 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 36/157 (22%), Positives = 73/157 (46%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L++G + DE L F G + + ++++++TG +G F+ + + +A +
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A+ E R G + +FVG L + ++ F+ + +
Sbjct: 108 HEQKTLPGMNRPIQVKPAA---SEGR---GEDRKLFVGMLGKQQGEEDVRRLFQP-FGHI 160
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
V+ P+ G SKG FVKF + E A+ ++G
Sbjct: 161 EECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQGLHG 196
Score = 112 (44.5 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 42/144 (29%), Positives = 62/144 (43%)
Query: 179 MNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVA------AYTTPVQVFPADN--D 230
+NG F S P S P T + + A YP A A++ P
Sbjct: 315 VNG-FGSLTPQ--SNGQPGSDTLYNNGVSPYPAAYPSAYAPASTAFSQQPSALPQQQREG 371
Query: 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEE 284
+F+ +L + EL QTFL FG +V+ K+ + R C GFV F SA+
Sbjct: 372 PEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQT 431
Query: 285 AILRMQGHMIGQQQVRISWGRKQD 308
AI M G IG +++++ R +D
Sbjct: 432 AIQAMNGFQIGMKRLKVQLKRPKD 455
Score = 97 (39.2 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 114 GPEH-SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
GPE ++F+ L + D L +TF + +V AKV D T +SK +GFV F +
Sbjct: 371 GPEGCNLFIYHLPQEFGDAELIQTFLP-FGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA 429
Query: 173 NRAMTEMNGVFCSTRPMRISAATPK 197
A+ MNG + +++ PK
Sbjct: 430 QTAIQAMNGFQIGMKRLKVQLKRPK 454
Score = 61 (26.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E R L++G L E + F G + ++R+ G +G FV+F S A+
Sbjct: 132 EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKFGSQGEAQAA 190
Query: 82 LQTYNGT-PMPGTEQN 96
+Q +G+ M G +
Sbjct: 191 IQGLHGSRTMTGASSS 206
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 145 (56.1 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 47/171 (27%), Positives = 83/171 (48%)
Query: 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
M EE L++G + E L + F V + II+ K T P G F+ +
Sbjct: 6 MENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRED 65
Query: 78 AERVLQTY-NGTPMPGTEQNFRLNWASFGIGE-KRPDA-----GPEHSIFVGDLAPDVTD 130
A++V+ ++ N +PG ++ +A GE +R D PEH +FVG L +V++
Sbjct: 66 ADKVINSFHNKKTLPGASSPLQVKYAD---GELERLDVLDCSCNPEHKLFVGMLPKNVSE 122
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181
+Q F S+Y +++ +++ + SKG F+K+ + + AM +NG
Sbjct: 123 TEVQSLF-SEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEALNG 171
Score = 86 (35.3 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRM 289
+F+ N+ ++EL TF FG++++ K+ + + C GF+ + ++A+A+ AI M
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 290 QGHMIGQQQVRISWGR 305
G + +++++ R
Sbjct: 401 NGCQLSGKKLKVQLKR 416
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 122 (48.0 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 41/173 (23%), Positives = 76/173 (43%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT- 84
L+IG + +E L F G++ + +++++ TG +G F+ + + +A +
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
+ +PG + ++ A E R G + +FVG L T+ + F Y +
Sbjct: 198 HEQKTLPGMTRPIQVKPAD---SESR---GEDRKLFVGMLNKQQTEEDVYRLFEP-YGVI 250
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
V+ P+ G SKG FVKF E A++ ++G T P + P+
Sbjct: 251 EECTVLRGPD-GNSKGCAFVKFSTHAEAQSAISALHG--SQTMPTGSDSLLPQ 300
Score = 115 (45.5 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 39/125 (31%), Positives = 57/125 (45%)
Query: 200 TGFQQQYAAVKATY--PVA-AYTTPVQVFPADNDITNT-----TIFVGNLDPNVTEEELK 251
TG QQ A AT P+ + P QV +F+ +L + EL
Sbjct: 470 TGVQQYTAIYPATTLTPIGQSLPQPPQVIQQQQQREGEGPEGCNLFIYHLPQEFGDNELM 529
Query: 252 QTFLHFGEIVNVKIPMGRG-----C-GFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
Q FL FG +++ K+ M R C GFV F ASA+ AI M G IG +++++ R
Sbjct: 530 QMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 589
Query: 306 KQDVT 310
+D +
Sbjct: 590 PKDAS 594
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 189 (71.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 57/181 (31%), Positives = 83/181 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-QGKSKGYAFIEFASFEDAKEA 539
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 540 LNSCNKMEIEGRTIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFEG-- 594
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
SVR A++VTD TG SKG+GFV F E + A M + + A PK G
Sbjct: 595 -SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652
Query: 202 F 202
F
Sbjct: 653 F 653
Score = 118 (46.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 42/187 (22%), Positives = 80/187 (42%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
RTL +L + E+ L F + + I+++ G+ +G ++EF S A AE+ L+
Sbjct: 394 RTLLAKNLSFNITEDELKEVFE---DALEIRLVSQD--GKSKGIAYIEFKSEADAEKNLE 448
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPD-----AGPEHSIFVGDLAPDVTDYLLQETFR 138
G + G + G ++R +G ++ + +L+ T+ LQE F
Sbjct: 449 EKQGAEIDGRSVSLYYTGEK-GQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 507
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
++ V G+SKGY F++F + A+ N + R +R+ P+
Sbjct: 508 KA-TFIK----VPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 562
Query: 199 TTGFQQQ 205
+ + Q
Sbjct: 563 SPNARSQ 569
Score = 80 (33.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 573 TLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 632
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 633 GEIDGNKVTLDWAKPKGEGG 652
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 186 (70.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 20 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 78
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 79 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 138
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 139 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 195
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A+V+A
Sbjct: 196 YVALAQRKEERQAHLTNQYMQRMASVRA 223
Score = 183 (69.5 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 51/197 (25%), Positives = 100/197 (50%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
++++ + D+ D L+E F P++ KV+TD +G+SKG+GFV F + +A+
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 81
Query: 178 EMNGVFCSTRPMRISAATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTT 235
EMNG + + + + A K + T ++++ +K + Y
Sbjct: 82 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR-ITRYQ-------------GVN 127
Query: 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--GR--GCGFVQFAARASAEEAILRMQG 291
++V NLD + +E L++ F FG I + K+ M GR G GFV F++ A +A+ M G
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 187
Query: 292 HMIGQQQVRISWGRKQD 308
++ + + ++ ++++
Sbjct: 188 RIVATKPLYVALAQRKE 204
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 56/181 (30%), Positives = 83/181 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 399 ESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASFEDAKEA 454
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 455 LNSCNKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFDG-- 509
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
S+R A++VTD TG SKG+GFV F E + A M + + A PK G
Sbjct: 510 -SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 567
Query: 202 F 202
F
Sbjct: 568 F 568
Score = 134 (52.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 45/184 (24%), Positives = 83/184 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ RTL +L Y ++ L F + V I+++ G+ +G ++EF + A AE+
Sbjct: 313 DARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSKD--GKSKGIAYIEFKTEADAEKT 367
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L+ GT + T + + + G G+ +G ++ + +L+ T+ LQE F
Sbjct: 368 LEEKQGTEIDYTGEKGQ-SQDHRG-GKNSTWSGESKTLVLSNLSYSATEETLQEVFEK-- 423
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
KV + N G+SKGY F++F + A+ N R +R+ P+ +
Sbjct: 424 --ATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 480
Query: 202 FQQQ 205
+ Q
Sbjct: 481 ARSQ 484
Score = 81 (33.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 488 TLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 547
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 548 GEIDGNKVTLDWAKPKGEGG 567
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 56/181 (30%), Positives = 83/181 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASFEDAKEA 459
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 460 LNSCNKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFDG-- 514
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
S+R A++VTD TG SKG+GFV F E + A M + + A PK G
Sbjct: 515 -SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 572
Query: 202 F 202
F
Sbjct: 573 F 573
Score = 134 (52.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 45/184 (24%), Positives = 83/184 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ RTL +L Y ++ L F + V I+++ G+ +G ++EF + A AE+
Sbjct: 318 DARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSKD--GKSKGIAYIEFKTEADAEKT 372
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L+ GT + T + + + G G+ +G ++ + +L+ T+ LQE F
Sbjct: 373 LEEKQGTEIDYTGEKGQ-SQDHRG-GKNSTWSGESKTLVLSNLSYSATEETLQEVFEK-- 428
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
KV + N G+SKGY F++F + A+ N R +R+ P+ +
Sbjct: 429 --ATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 485
Query: 202 FQQQ 205
+ Q
Sbjct: 486 ARSQ 489
Score = 81 (33.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 493 TLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 552
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 553 GEIDGNKVTLDWAKPKGEGG 572
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 56/181 (30%), Positives = 83/181 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASFEDAKEA 459
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 460 LNSCNKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFDG-- 514
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
S+R A++VTD TG SKG+GFV F E + A M + + A PK G
Sbjct: 515 -SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 572
Query: 202 F 202
F
Sbjct: 573 F 573
Score = 134 (52.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 45/184 (24%), Positives = 83/184 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ RTL +L Y ++ L F + V I+++ G+ +G ++EF + A AE+
Sbjct: 318 DARTLLAKNLPYKVTQDELKEVFE---DAVEIRLVSKD--GKSKGIAYIEFKTEADAEKT 372
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L+ GT + T + + + G G+ +G ++ + +L+ T+ LQE F
Sbjct: 373 LEEKQGTEIDYTGEKGQ-SQDHRG-GKNSTWSGESKTLVLSNLSYSATEETLQEVFEK-- 428
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
KV + N G+SKGY F++F + A+ N R +R+ P+ +
Sbjct: 429 --ATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 485
Query: 202 FQQQ 205
+ Q
Sbjct: 486 ARSQ 489
Score = 81 (33.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 493 TLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 552
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 553 GEIDGNKVTLDWAKPKGEGG 572
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 188 (71.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 57/181 (31%), Positives = 83/181 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEA 539
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 540 LNSCNKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFDG-- 594
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
SVR A++VTD TG SKG+GFV F E + A M + + A PK G
Sbjct: 595 -SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652
Query: 202 F 202
F
Sbjct: 653 F 653
Score = 125 (49.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 44/188 (23%), Positives = 82/188 (43%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ RTL +L Y ++ L F E I+++ G+ +G ++EF + A AE+
Sbjct: 391 DARTLLAKNLPYKVTQDELKEVFEDAAE---IRLVSKD--GKSKGIAYIEFKTEADAEKT 445
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYL----LQETF 137
+ GT + G ++ L + G+ + G ++S + G+ V L +ET
Sbjct: 446 FEEKQGTEIDG--RSISLYYTGEK-GQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 502
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ + KV + N G+SKGY F++F + A+ N R +R+ P+
Sbjct: 503 QEVFEKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561
Query: 198 KTTGFQQQ 205
+ + Q
Sbjct: 562 GSPNARSQ 569
Score = 80 (33.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 573 TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 632
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 633 GEIDGNKVTLDWAKPKGEGG 652
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 188 (71.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 57/181 (31%), Positives = 83/181 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEA 540
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 541 LNSCNKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFDG-- 595
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
SVR A++VTD TG SKG+GFV F E + A M + + A PK G
Sbjct: 596 -SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653
Query: 202 F 202
F
Sbjct: 654 F 654
Score = 125 (49.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 44/188 (23%), Positives = 82/188 (43%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ RTL +L Y ++ L F E I+++ G+ +G ++EF + A AE+
Sbjct: 392 DARTLLAKNLPYKVTQDELKEVFEDAAE---IRLVSKD--GKSKGIAYIEFKTEADAEKT 446
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYL----LQETF 137
+ GT + G ++ L + G+ + G ++S + G+ V L +ET
Sbjct: 447 FEEKQGTEIDG--RSISLYYTGEK-GQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 503
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ + KV + N G+SKGY F++F + A+ N R +R+ P+
Sbjct: 504 QEVFEKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 562
Query: 198 KTTGFQQQ 205
+ + Q
Sbjct: 563 GSPNARSQ 570
Score = 80 (33.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 574 TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 633
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 634 GEIDGNKVTLDWAKPKGEGG 653
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 188 (71.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 57/181 (31%), Positives = 83/181 (45%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E +TL + +L Y E L F + IK+ +N+ G+ +GY F+EF S A+
Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEA 541
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
L + N + G L G + P ++FV L+ D T+ L+E+F
Sbjct: 542 LNSCNKREIEGRAIRLELQGPR---GSPNARSQPSKTLFVKGLSEDTTEETLKESFDG-- 596
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
SVR A++VTD TG SKG+GFV F E + A M + + A PK G
Sbjct: 597 -SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654
Query: 202 F 202
F
Sbjct: 655 F 655
Score = 125 (49.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 44/188 (23%), Positives = 82/188 (43%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ RTL +L Y ++ L F E I+++ G+ +G ++EF + A AE+
Sbjct: 393 DARTLLAKNLPYKVTQDELKEVFEDAAE---IRLVSKD--GKSKGIAYIEFKTEADAEKT 447
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYL----LQETF 137
+ GT + G ++ L + G+ + G ++S + G+ V L +ET
Sbjct: 448 FEEKQGTEIDG--RSISLYYTGEK-GQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 504
Query: 138 RSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
+ + KV + N G+SKGY F++F + A+ N R +R+ P+
Sbjct: 505 QEVFEKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 563
Query: 198 KTTGFQQQ 205
+ + Q
Sbjct: 564 GSPNARSQ 571
Score = 80 (33.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 235 TIFVGNLDPNVTEEELKQTF---LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
T+FV L + TEE LK++F + + + + +G GFV F + A+ A M+
Sbjct: 575 TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 634
Query: 292 HMIGQQQVRISWGRKQDVTG 311
I +V + W + + G
Sbjct: 635 GEIDGNKVTLDWAKPKGEGG 654
WARNING: HSPs involving 796 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 423 373 0.00087 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1046
No. of states in DFA: 614 (65 KB)
Total size of DFA: 245 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.75u 0.08s 28.83t Elapsed: 00:00:01
Total cpu time: 28.81u 0.09s 28.90t Elapsed: 00:00:01
Start: Sat May 11 02:17:59 2013 End: Sat May 11 02:18:00 2013
WARNINGS ISSUED: 2