BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014513
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 576 bits (1485), Expect = e-163, Method: Compositional matrix adjust.
Identities = 299/423 (70%), Positives = 337/423 (79%), Gaps = 16/423 (3%)
Query: 6 PQGGGYHQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE 65
PQG +HHP TLEEVRTLWIGDLQYW DENYL+SCF+ TGE+VS+K+IRNKITGQPE
Sbjct: 10 PQGS----YHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPE 65
Query: 66 GYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLA 125
GYGF+EF+SHAAAER LQTYNGT MPGTE FRLNWASFG G+K DAGP+HSIFVGDLA
Sbjct: 66 GYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKV-DAGPDHSIFVGDLA 124
Query: 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185
PDVTDYLLQETFR Y SVRGAKVVTDP+TGRSKGYGFVKF +E+ERNRAM EMNG++CS
Sbjct: 125 PDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCS 184
Query: 186 TRPMRISAATPKKTTGFQQQYAAVKATYPV---AAYTTPVQVF--PADNDITNTTIFVGN 240
TRPMRISAATPKK G QQQY KA YPV +A PVQ + P ++D+T TTI V N
Sbjct: 185 TRPMRISAATPKKNVGVQQQY-VTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVAN 243
Query: 241 LDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300
LD NVTEEELK+ F GE++ VKIP +G G+VQF R SAEEA+ RMQG +IGQQ VR
Sbjct: 244 LDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVR 303
Query: 301 ISWGRKQDVTGSVAAQVDPSQWNAYYGYGQGYDAYAYGAAQDPSLYAYGAYAGYPQYAQQ 360
ISW + G V Q DP+QWN YYGYGQGYDAYAYGA QDPS+YAYG Y GYPQY QQ
Sbjct: 304 ISWSKNPGQDGWV-TQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGY-GYPQYPQQ 361
Query: 361 AEGVTDMA-AVASALPTMEQREELYDPLATPDVDKLNAAYLSIHGNAILGRTLWLKTSSL 419
EG D++ + A + EQ ELYDPLATPDVDKLNAAYLS+H +AILGR +W +TSSL
Sbjct: 362 GEGTQDISNSAAGGVAGAEQ--ELYDPLATPDVDKLNAAYLSVHASAILGRPMWQRTSSL 419
Query: 420 TPQ 422
T Q
Sbjct: 420 TSQ 422
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/340 (59%), Positives = 247/340 (72%), Gaps = 13/340 (3%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E+ +T+WIGDLQ W DE+YL SCF+ GEV+S+KIIRNK TGQ E YGFVEF +HAAAE+
Sbjct: 81 EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEK 140
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
VLQ+YNGT MP TEQ FRLNWA F GEKR + G + SIFVGDLA DVTD +L++TF S+
Sbjct: 141 VLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASR 200
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
YPS++GAKVV D NTG SKGYGFV+F DE+ER+RAMTEMNGV+CS+R MRI ATPKK +
Sbjct: 201 YPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS 260
Query: 201 GFQQQYA-AVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
+Q + AV + A+ +D D +NTTIFVG LD VT+EEL+Q+F FGE
Sbjct: 261 AHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGE 320
Query: 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR----KQDVTGSVAA 315
+V+VKIP G+GCGFVQF+ R+SA+EAI ++ G +IG+Q VR+SWGR KQ T S
Sbjct: 321 VVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDS--- 377
Query: 316 QVDPSQWNAYYGYGQGYDAYAYGAA--QDPSLYAYGAYAG 353
SQWN Y Q Y Y YGA+ QD +YA GA G
Sbjct: 378 ---GSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYG 414
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/343 (59%), Positives = 237/343 (69%), Gaps = 23/343 (6%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
EVR+LWIGDLQYW DENYLS+CF HTGE+VS K+IRNK TGQ EGYGF+EF SHAAAE +
Sbjct: 82 EVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETI 141
Query: 82 LQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
LQTYNGT MP EQNFR+NWAS G GE+R D+ EH+IFVGDLA DVTDY+LQETF+S Y
Sbjct: 142 LQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA-EHTIFVGDLAADVTDYILQETFKSVY 200
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
SVRGAKVVTD TGRSKGYGFVKF DE+E+ RAMTEMNGV CSTRPMRI A KK G
Sbjct: 201 SSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVG 260
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
Q+ A Y P Q ++D NTTIFVG LDP V EE L+Q F +GE+V
Sbjct: 261 TPQK----------ATYQNP-QATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV 309
Query: 262 NVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQVDPSQ 321
+VKI G+ CGFVQF RASAE+A+ + G +G Q +R+SWGR + Q D +Q
Sbjct: 310 HVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPS-----SKQTDQTQ 364
Query: 322 WNAYYGYGQGYDAYAYGA-----AQDPSLYAYGAYAGYPQYAQ 359
W G GY AQDP++Y YG Y GY Y Q
Sbjct: 365 WGGSGGAYYGYGQGYEAYGYAPPAQDPNMY-YGNYPGYANYQQ 406
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 203 QQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN 262
QQQY A+ T P + P N ++++G+L + E L F H GE+V+
Sbjct: 61 QQQYGAMATTNPNPS--------PTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVS 112
Query: 263 VKIPMGR------GCGFVQFAARASAEEAILRMQGHMIG--QQQVRISW 303
K+ + G GF++F + A+AE + G ++ +Q R++W
Sbjct: 113 AKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNW 161
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/346 (56%), Positives = 232/346 (67%), Gaps = 28/346 (8%)
Query: 10 GYHQH----HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE 65
G HQ+ +P + +V++LWIGDLQ W DENY+ S FA +GE S K+IRNK+TGQ E
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 66 GYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKR-PDAGPEHSIFVGDL 124
GYGF+EFVSH+ AERVLQTYNG PMP TEQ FRLNWA G GEKR GP+H+IFVGDL
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 125 APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184
AP+VTDY+L +TF++ Y SV+GAKVV D TGRSKGYGFV+F DENE+ RAMTEMNG +C
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 221
Query: 185 STRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN 244
STRPMRI A K Q A Y DND NTTIFVG LD N
Sbjct: 222 STRPMRIGPAANKNALPMQ-----------PAMYQNTQGANAGDNDPNNTTIFVGGLDAN 270
Query: 245 VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304
VT++ELK F FGE+++VKIP G+ CGFVQ+A +ASAE A+ + G +G Q +R+SWG
Sbjct: 271 VTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWG 330
Query: 305 RKQDVTGSVAAQVDPSQWN--AYYGY-GQGYDAYAYGA---AQDPS 344
R S Q D +QWN YYGY Q Y Y A QDP+
Sbjct: 331 R------SPNKQSDQAQWNGGGYYGYPPQPQGGYGYAAQPPTQDPN 370
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/331 (58%), Positives = 235/331 (70%), Gaps = 20/331 (6%)
Query: 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75
P T +E+RTLWIGDLQYW DEN+L CFAHTGE+VS K+IRNK TGQ EGYGF+EF SH
Sbjct: 54 QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASH 113
Query: 76 AAAERVLQTYNGTPMPG-TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQ 134
AAAERVLQT+N P+P +Q FRLNWAS G+KR D+ P+++IFVGDLA DVTDY+L
Sbjct: 114 AAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILL 172
Query: 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194
ETFR+ YPSV+GAKVV D TGR+KGYGFV+F DE+E+ RAMTEMNGV CSTRPMRI A
Sbjct: 173 ETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPA 232
Query: 195 TPKK-TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQT 253
KK TG + Y + A TT DND NTT+FVG LD +VT++ LK
Sbjct: 233 ASKKGVTGQRDSYQSS-----AAGVTT-------DNDPNNTTVFVGGLDASVTDDHLKNV 280
Query: 254 FLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSV 313
F +GEIV+VKIP G+ CGFVQF+ ++ AEEA+ + G +G VR+SWGR + S
Sbjct: 281 FSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGR----SPSN 336
Query: 314 AAQVDPSQWNAYYGYGQGYDAYAYGAAQDPS 344
DPSQ+ Y GYGQG + Y Y QDP+
Sbjct: 337 KQSGDPSQF-YYGGYGQGQEQYGYTMPQDPN 366
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/352 (56%), Positives = 241/352 (68%), Gaps = 26/352 (7%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCF--AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E +T+W+GDLQ W DE YL+S F A E+VS+K+IRNK G EGYGFVEF SH A+
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETFR 138
+VLQ +NG PMP T+Q FRLNWASF GEKR + GP+ SIFVGDLAPDV+D LL ETF
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+YPSV+ AKVV D NTGRSKGYGFV+F DENER +AMTEMNGV CS+R MRI ATP+K
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T G+QQQ + P A+T ++ D NTTIFVG LD +VT+E+LKQ F FG
Sbjct: 281 TNGYQQQGGYM----PSGAFTR------SEGDTINTTIFVGGLDSSVTDEDLKQPFSEFG 330
Query: 259 EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR----KQDVTGSVA 314
EIV+VKIP+G+GCGFVQF R +AEEA+ ++ G +IG+Q VR+SWGR KQ
Sbjct: 331 EIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGN 390
Query: 315 AQVDPSQWNAYYGYGQGYDAYAYGAAQ-DPSLYAYGAYAGYPQYAQQAEGVT 365
VDP YYG GQ Y+ Y Y Q DP +Y Y YP Y + V+
Sbjct: 391 QWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPY--YPMYGGHQQQVS 434
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/327 (56%), Positives = 231/327 (70%), Gaps = 9/327 (2%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
++V+TLW+GDL +W DE YL +CF+HT EV S+K+IRNK T Q EGYGFVEF+S +AAE
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
LQ+++G MP EQ FRLNWASF GEKR + GP+ SIFVGDLAPDV+D +L ETF
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
+YPSV+GAKVV D NTGRSKGYGFV+F DENER+RAMTEMNG FCS+R MR+ ATPK+
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259
+ QQ + T +D + N+TIFVG LD +VTEE+L Q F FGE
Sbjct: 296 AAYGQQNGSQALTLAGGHGGNGSM---SDGESNNSTIFVGGLDADVTEEDLMQPFSDFGE 352
Query: 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQVDP 319
+V+VKIP+G+GCGFVQFA R SAEEAI + G +IG+ VR+SWGR + +
Sbjct: 353 VVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSG--- 409
Query: 320 SQWNAYYGYGQGYDAYAYGAAQDPSLY 346
+QWN Y GQGY+ Y A QD ++Y
Sbjct: 410 NQWNGGYSRGQGYNN-GY-ANQDSNMY 434
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/289 (59%), Positives = 221/289 (76%), Gaps = 5/289 (1%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
++V+TLW+GDL +W DE YL SCF+HTGEV S+K+IRNK+T Q EGYGFVEF+S AAAE
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRS 139
VLQ Y+G+ MP ++Q FR+NWASF GEKR + GP+ S+FVGDL+PDVTD LL ETF
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199
+YPSV+ AKVV D NTGRSKGYGFV+F DENER+RA+TEMNG +CS R MR+ ATPK+
Sbjct: 225 RYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
Query: 200 TGFQQQYAAVKATYPVAAYTTPVQV---FPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
QQQ+++ +A + + + +D + TN TIFVG +DP+V +E+L+Q F
Sbjct: 285 IANQQQHSS-QAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQ 343
Query: 257 FGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
FGE+V+VKIP+G+GCGFVQFA R SAE+AI + G +IG+ VR+SWGR
Sbjct: 344 FGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/352 (55%), Positives = 240/352 (68%), Gaps = 26/352 (7%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGE--VVSIKIIRNKITGQPEGYGFVEFVSHAAAE 79
E +T+W+GDL +W DE YL+S FA E +VS+K+IRNK G EGYGFVEF SH A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 80 RVLQTYNGTPMPGTEQNFRLNWASFGIGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETFR 138
+VL+ +NGT MP T+Q FRLNWASF GEKR + GP+ SIFVGDL+PDV+D LL ETF
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+YPSV+ AKVV D NTGRSKGYGFV+F DENER +AMTEMNGV CS+R MRI ATP+K
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T G+QQQ + P T P + DI NTTIFVG LD +VT+E+LKQ F FG
Sbjct: 279 TNGYQQQGGYM----PNGTLTRP------EGDIMNTTIFVGGLDSSVTDEDLKQPFNEFG 328
Query: 259 EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR----KQDVTGSVA 314
EIV+VKIP+G+GCGFVQF R +AEEA+ ++ G +IG+Q VR+SWGR KQ
Sbjct: 329 EIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGN 388
Query: 315 AQVDPSQWNAYYGYGQGYDAYAYGAAQ-DPSLYAYGAYAGYPQYAQQAEGVT 365
VDP YYG GQ Y+ Y Y Q DP +Y Y YP Y + V+
Sbjct: 389 QWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPY--YPMYGGHQQQVS 432
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 344 bits (883), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 167/290 (57%), Positives = 207/290 (71%), Gaps = 12/290 (4%)
Query: 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75
+P + E+R+LWIGDLQ W DENYL + F TGE + K+IRNK G EGYGF+EFV+H
Sbjct: 72 NPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNH 131
Query: 76 AAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQE 135
A AER LQTYNG PMP +EQ FRLNWA G GE+R GPEH++FVGDLAPDVTD++L E
Sbjct: 132 ATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTE 191
Query: 136 TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195
TF++ Y SV+GAKVV D TGRSKGYGFV+F DE+E+ RAMTEMNG +CS+RPMR A
Sbjct: 192 TFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAA 251
Query: 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFL 255
KK Q A+Y Q ++D TNTTIFVG +D +VTE++LK F
Sbjct: 252 NKKPLTMQ-----------PASYQN-TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFG 299
Query: 256 HFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
FGE+V+VKIP G+ CGFVQ+A RA AE+A+ + G +G Q +R+SWGR
Sbjct: 300 QFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 177/285 (62%), Gaps = 2/285 (0%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
TLW+G+L+ W E ++ + G+ V +K+IRN+ TG GY FVEF S A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 85 YNGTPMPGTEQNFRLNWASFG-IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
N P+PGT F+LNWAS G + EK E+SIFVGDL+P+V ++ + F S+Y S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
+ AK++TDP T S+GYGFV+F DEN++ A+ EM G C RP+R+ ATPK
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVF 272
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
V + P + + Q P D N+T+FVG L V+EEELK F +FGEIV V
Sbjct: 273 SPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYV 332
Query: 264 KIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
KIP G+GCGFVQF R SAE AI ++QG+ +G ++R+SWGR Q+
Sbjct: 333 KIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQN 377
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARAS 281
+N TT+++G L+P VTE ++Q + G+ V VK+ R G FV+FA+
Sbjct: 87 ENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHE 146
Query: 282 AEEAILRMQGHMIGQQQV-RISWG 304
A A+ + G + +++W
Sbjct: 147 ASSAMSMNNKPIPGTNHLFKLNWA 170
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 171/287 (59%), Gaps = 12/287 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE--GYGFVEFVSHAAAERVL 82
TLW+GDL+ W D ++ +A E V++K++R+K + Y FV+F S AAAER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRP--DAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
YN T +PG F+LNWA+ G + PE SIFVGDL P D L TFRS
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
YPS AK++ DP TG S+ YGFV+F E E+ A+ M G C RP+RIS A+PK
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKS-- 263
Query: 201 GFQQQYAAVKATYPVAAYTT---PVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHF 257
+ AA A V T+ P Q D NTT+FVG L N++E++L+ F F
Sbjct: 264 --RASIAADSALGIVPTSTSNRQPNQDL-CSMDPLNTTVFVGGLASNLSEKDLQVCFQPF 320
Query: 258 GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304
G I+N+KIP G+GCGFVQ++ +++AE+AI MQG ++G +R++WG
Sbjct: 321 GRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWG 367
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 211 ATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG 270
A + + +TP+Q + T+++G+L+P + ++Q + E VNVK+ +
Sbjct: 62 APFNCSPSSTPLQDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKA 121
Query: 271 CG--------FVQFAARASAEEAILRMQGHMI 294
FVQF++ A+AE A+++ MI
Sbjct: 122 SSSETLISYCFVQFSSSAAAERALMKYNNTMI 153
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/179 (54%), Positives = 124/179 (69%), Gaps = 8/179 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPKKT 199
PS RG KVV DP TG SKGYGFVKF DE E+ RA+TE G V +P+R+S A PK +
Sbjct: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 75/305 (24%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S+++GDL P + + + F + +V K++ + TG GY FV+F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237
++NG +P + ATP K F+ YA TY +P ++F
Sbjct: 64 KING-----KP--LPGATPAKR--FKLNYA----TYGKQPDNSP-----------EYSLF 99
Query: 238 VGNLDPNVTEEELKQTFLHF------GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
VG+L P+V + L + F+ G++V + +G GFV+F + A+ QG
Sbjct: 100 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQG 159
Query: 292 HM-IGQQQVRISWGRKQDVTGSVAAQVDPSQWN------------------AYYGYGQGY 332
+ +G + VR+S V A++V P +++ A +GY Q
Sbjct: 160 AVGLGCKPVRLS------VAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNT 213
Query: 333 DAYAYGAAQDPSLYAYGAYAGYPQYAQQAEGVTDMAAVASALPT----------MEQREE 382
+Y+Y Q GY Q Q A+ P MEQ EE
Sbjct: 214 GSYSYSYPQ----------YGYTQSTMQTYEEVGDDALEDPAPQLDVTEANKEFMEQSEE 263
Query: 383 LYDPL 387
LYD L
Sbjct: 264 LYDAL 268
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 124/179 (69%), Gaps = 8/179 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPKKT 199
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G V ++P+R+S A PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 126/305 (41%), Gaps = 75/305 (24%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S+++GDL P + + + F + +V K++ + TG GY FV+F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237
++NG +P + ATP K F+ YA TY +P ++F
Sbjct: 64 KING-----KP--LPGATPAKR--FKLNYA----TYGKQPDNSP-----------EYSLF 99
Query: 238 VGNLDPNVTEEELKQTFLHF------GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
VG+L P+V + L + F+ G++V + + +G GFV+F + A+ QG
Sbjct: 100 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159
Query: 292 HM-IGQQQVRISWGRKQDVTGSVAAQVDPSQWN------------------AYYGYGQGY 332
+ +G + VR+S V A++V P +++ A +GY Q
Sbjct: 160 AVGLGSKPVRLS------VAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNT 213
Query: 333 DAYAYGAAQDPSLYAYGAYAGYPQYAQQAEGVTDMAAVASALPT----------MEQREE 382
+Y+Y Q GY Q Q A+ +P MEQ EE
Sbjct: 214 GSYSYSYPQ----------YGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEE 263
Query: 383 LYDPL 387
LYD L
Sbjct: 264 LYDAL 268
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRPMRISAATPKKT 199
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G ++P+R+S A PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 126/305 (41%), Gaps = 75/305 (24%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S+++GDL P + + + F + +V K++ + TG GY FV+F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237
++NG +P + ATP K F+ YA TY +P ++F
Sbjct: 64 KING-----KP--LPGATPAKR--FKLNYA----TYGKQPDNSP-----------EYSLF 99
Query: 238 VGNLDPNVTEEELKQTFLHF------GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
VG+L P+V + L + F+ G++V + + +G GFV+F + A+ QG
Sbjct: 100 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159
Query: 292 HM-IGQQQVRISWGRKQDVTGSVAAQVDPSQWN------------------AYYGYGQGY 332
+ +G + VR+S V A++V P +++ A +GY Q
Sbjct: 160 AIGLGSKPVRLS------VAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNT 213
Query: 333 DAYAYGAAQDPSLYAYGAYAGYPQYAQQAEGVTDMAAVASALPT----------MEQREE 382
+Y+Y Q GY Q Q A+ +P MEQ EE
Sbjct: 214 GSYSYSYPQ----------YGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEE 263
Query: 383 LYDPL 387
LYD L
Sbjct: 264 LYDAL 268
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+A++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPKKT 199
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G V +P+R+S A PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 125/305 (40%), Gaps = 75/305 (24%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S+++GDL P + + + F + +V K++ + TG GY FV+F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237
++NG +P + ATP K F+ YA TY +P ++F
Sbjct: 64 KING-----KP--LPGATPAKR--FKLNYA----TYGKQPDNSP-----------EYSLF 99
Query: 238 VGNLDPNVTEEELKQTFLHF------GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
VG+L P+V + L + F+ G++V + + +G GFV+F + A+ QG
Sbjct: 100 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159
Query: 292 HM-IGQQQVRISWGRKQDVTGSVAAQVDPSQWN------------------AYYGYGQGY 332
+ +G + VR+S V A++V P +++ A +GY Q
Sbjct: 160 AVGLGCKPVRLS------VAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNT 213
Query: 333 DAYAYGAAQDPSLYAYGAYAGYPQYAQQAEGVTDMAAVASALPT----------MEQREE 382
+Y+Y Q GY Q Q A+ P MEQ EE
Sbjct: 214 GSYSYSYPQ----------YGYTQSTMQTYEEVGDDALEDPAPQLDVTEANKEFMEQSEE 263
Query: 383 LYDPL 387
LYD L
Sbjct: 264 LYDAL 268
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 184 bits (468), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
+LW+GDL+ + DEN++S FA GE V+S+KIIRN++TG P GY FVEF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 84 TYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY 141
NG P+PG + F+LN+ ++G K+PD PE+S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 142 PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMRISAATPKKT 199
PS RG KVV D TG SKGYGFVKF DE E+ RA+TE G V ++P+R+S A PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 125/305 (40%), Gaps = 75/305 (24%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S+++GDL P + + + F + +V K++ + TG GY FV+F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237
++NG +P + ATP K F+ Y TY +P ++F
Sbjct: 64 KING-----KP--LPGATPAKR--FKLNYV----TYGKQPDNSP-----------EYSLF 99
Query: 238 VGNLDPNVTEEELKQTFLHF------GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG 291
VG+L P+V + L + F+ G++V + + +G GFV+F + A+ QG
Sbjct: 100 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159
Query: 292 HM-IGQQQVRISWGRKQDVTGSVAAQVDPSQWN------------------AYYGYGQGY 332
+ +G + VR+S V A++V P +++ A +GY Q
Sbjct: 160 AVGLGSKPVRLS------VAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNT 213
Query: 333 DAYAYGAAQDPSLYAYGAYAGYPQYAQQAEGVTDMAAVASALPT----------MEQREE 382
+Y+Y Q GY Q Q A+ +P MEQ EE
Sbjct: 214 GSYSYSYPQ----------YGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEE 263
Query: 383 LYDPL 387
LYD L
Sbjct: 264 LYDAL 268
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 166/336 (49%), Gaps = 63/336 (18%)
Query: 26 LWIGDLQYWFDENYLSSCFAHTGEV-VSIKIIRNKITGQ----------PEGYGFVEFVS 74
L++GDL +D+N + +A GE ++++++ N +GY FV+F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 75 HAAAERVLQTYNGTPMPG-TEQNFRLNWASFGIGEKRP-----DAGPEHSIFVGDLAPDV 128
A L NG +P + +LNWA+ +G SIFVGDLAP+V
Sbjct: 116 STHAANAL-LKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 129 TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
T+ L E F ++Y S AK+V D TG SKGYGFVKF + +E+ A++EM GVF + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 189 MRISAATPKKTTGFQQQYAAVKATYP---------------------------------- 214
+++ T QQQ+ + Y
Sbjct: 235 IKVGP------TSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKR 288
Query: 215 --VAAYTTPVQVFPADNDIT---NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR 269
++ + PVQ P+ N T NTT+F+G L VTE+EL+ F FG IV VKIP+G+
Sbjct: 289 NHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGK 348
Query: 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305
CGFVQ+ R SAE AI MQG I +VR+SWGR
Sbjct: 349 CCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGR 384
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 9/89 (10%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLH------FGEIVNVKIP-MGRGCGFVQFAARASAEEA 285
N +IFVG+L PNVTE +L + F++ +IV+ ++ M +G GFV+F + A
Sbjct: 162 NCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLA 221
Query: 286 ILRMQGHMIGQQQVRI--SWGRKQDVTGS 312
+ MQG + + +++ + G++Q V+G+
Sbjct: 222 LSEMQGVFLNGRAIKVGPTSGQQQHVSGN 250
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T++IG L E+ L + F G +V +KI K GFV++V +AE +
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCC------GFVQYVDRLSAEAAIAG 367
Query: 85 YNGTPMPGTEQNFRLNW 101
G P+ + RL+W
Sbjct: 368 MQGFPIANSR--VRLSW 382
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 116/182 (63%), Gaps = 8/182 (4%)
Query: 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV-SIKIIRNKITGQPEGYGFVEFVSHAAA 78
+ +LW+GDL + DEN++ F+ GE +KII +++TG GY FVE A+
Sbjct: 2 FNRMTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASV 61
Query: 79 ERVLQTYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQET 136
+R +Q NG +PG+ + F+LN+A++G KRP+ GPE S+FVGDL +V DY L +
Sbjct: 62 DRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQF 118
Query: 137 FRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM-NGVFCSTRPMRISAAT 195
F ++PS +GAKVVTDP G S+GYGFVKF DENE+ +A+ E N +P+RIS A
Sbjct: 119 FLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAV 177
Query: 196 PK 197
K
Sbjct: 178 NK 179
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 131/337 (38%), Gaps = 70/337 (20%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
S+++GDL P + + +++ F + + G K++T TG S GY FV+ DE +R +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237
+NG + + P + F+ YA TY P ++F
Sbjct: 67 RLNGKL-------VPGSNPPRK--FKLNYA----TYGKRPEPGP-----------EFSVF 102
Query: 238 VGNLDPNVTEEELKQTFL-HFGEIVNVKI---PMG--RGCGFVQFAARASAEEAILRMQG 291
VG+L V + +L Q FL F K+ P G RG GFV+F+ ++A+ Q
Sbjct: 103 VGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEEFQN 162
Query: 292 HM-IGQQQVRISWGRKQDVTGSV------------AAQVDPSQWNAYY---GYGQGYDAY 335
+G + +RIS + S Q +N+YY GY Q Y Y
Sbjct: 163 ASGLGGKPIRISIAVNKGNKASTYHNQNNTYNTNYQQQYYRQPYNSYYPQWGYDQ-YSGY 221
Query: 336 AYGAAQDPSLYAYGAYAG------YPQYAQQAEGVTDMAAVASALPTMEQREELYDPLAT 389
YG Y YA P DM A E+ EE DP
Sbjct: 222 NYG---------YNPYAAPPPMMGPPPPMGMPPMPPDMQGSTEAHDGTEEVEE--DPSED 270
Query: 390 P----DVDKLNAAYL--SIHGNAILGRTLWLKTSSLT 420
P DV++LN Y+ S L WL ++T
Sbjct: 271 PNPQVDVEELNRQYMERSEELYDSLMECHWLPMDTIT 307
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 234 TTIFVGNLDPNVTEEELKQTFLHFGEIV-NVKIPMGR------GCGFVQFAARASAEEAI 286
T++++G+LDP + E +KQ F GE VKI R G FV+ A AS + +
Sbjct: 6 TSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCV 65
Query: 287 LRMQGHMI 294
R+ G ++
Sbjct: 66 QRLNGKLV 73
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 166/351 (47%), Gaps = 22/351 (6%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83
RTL++G+L E + F+ G S K+I + P Y FVEF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALA 66
Query: 84 TYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143
NG + G E ++NWA+ +K+ D +FVGDL+P++T ++ F + +
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGK 122
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ 203
+ A+VV D TG+SKGYGFV F ++ + A+ M G + R +R + AT K
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP----- 177
Query: 204 QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263
A K+T + + N T++ G + +T++ ++QTF FG+I+ +
Sbjct: 178 ---PAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEI 234
Query: 264 KIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQVDPSQWN 323
++ +G FV+F+ SA AI+ + G I V+ WG++ QVD SQW
Sbjct: 235 RVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWG 294
Query: 324 AY---YGYGQGYDAYAYGAAQDPSLYAYGAYAGYPQYAQQAEGVTDMAAVA 371
+ YG Q Y Y Q P YG Y G P + QQ GV + A
Sbjct: 295 QWSQVYGNPQQYGQYMANGWQVP---PYGVY-GQP-WNQQGFGVDQSPSAA 340
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 37/203 (18%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ + + Y FV+F + +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEHTS--NDPYCFVEFYEHRD 60
Query: 172 RNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDI 231
A+ MNG + ++++ A TTP D
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWA------------------------TTPSS---QKKDT 93
Query: 232 TNT-TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP------MGRGCGFVQFAARASAEE 284
+N +FVG+L P +T E++K F FG+I + ++ +G GFV F + AE
Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153
Query: 285 AILRMQGHMIGQQQVRISWGRKQ 307
AI+ M G +G +Q+R +W ++
Sbjct: 154 AIVHMGGQWLGGRQIRTNWATRK 176
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCG----FVQFAARASAE 283
++D T++VGNL +VTE + Q F G + K+ FV+F A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 284 EAILRMQGHMIGQQQVRISW 303
A+ M G I ++V+++W
Sbjct: 63 AALAAMNGRKILGKEVKVNW 82
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 168/370 (45%), Gaps = 43/370 (11%)
Query: 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEG----------------- 66
RTL++G+L E + F+ G S K+I T QP+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEQPDSRRVNSSVGFSVLQHTSN 64
Query: 67 --YGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDL 124
Y FVEF H A L NG + G E ++NWA+ +K+ D +FVGDL
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDL 121
Query: 125 APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184
+P++T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ M G +
Sbjct: 122 SPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180
Query: 185 STRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN 244
R +R + AT K A K+T + + N T++ G +
Sbjct: 181 GGRQIRTNWATRKP--------PAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 245 VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304
+T++ ++QTF FG+I+ +++ +G FV+F+ SA AI+ + G I V+ WG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 292
Query: 305 RKQDVTGSVAAQVDPSQWNAY---YGYGQGYDAYAYGAAQDPSLYAYGAYAGYPQYAQQA 361
++ QVD SQW + YG Q Y Y Q P YG Y G P + QQ
Sbjct: 293 KESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVP---PYGVY-GQP-WNQQG 347
Query: 362 EGVTDMAAVA 371
GV + A
Sbjct: 348 FGVDQSPSAA 357
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGRSKG---------- 160
D G +++VG+L+ DVT+ L+ + F SQ + K++T+ P++ R
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 161 ----YGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVA 216
Y FV+F + + A+ MNG + ++++ A
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA---------------------- 100
Query: 217 AYTTPVQVFPADNDITNT-TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP------MGR 269
TTP D +N +FVG+L P +T E++K F FG+I + ++ +
Sbjct: 101 --TTPSS---QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 155
Query: 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
G GFV F + AE AI+ M G +G +Q+R +W ++
Sbjct: 156 GYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 173/369 (46%), Gaps = 35/369 (9%)
Query: 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
M E +TL++G+L E + F+ G + K+I + P Y FVEF H
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRH 58
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP----------EHSIFVGDLAPD 127
A L NG + G E ++NWA+ +K+ + +FVGDL+P+
Sbjct: 59 AAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPE 116
Query: 128 VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
+T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R
Sbjct: 117 ITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 188 PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTE 247
+R + AT K A K+TY + + N T++ G + +TE
Sbjct: 176 QIRTNWATRKP--------PAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 248 EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ ++QTF FG+I+ +++ +G FV+F++ SA AI+ + G I V+ WG++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKET 287
Query: 308 -DVTGSVAAQVD----PS--QWNAYYGYGQGYDAYAYGAAQDPSLYAYGAYAGYPQYAQQ 360
D+ V Q P+ QW +YG Q Y Q P AYG Y G P ++QQ
Sbjct: 288 LDMINPVQQQNQIGYPPTYGQWGQWYGNAQQIGQYVPNGWQVP---AYGVY-GQP-WSQQ 342
Query: 361 AEGVTDMAA 369
T +A
Sbjct: 343 GFNQTQSSA 351
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 163/352 (46%), Gaps = 33/352 (9%)
Query: 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAA 77
M E +TL++G+L E + F+ G + K+I + P Y FVEF H
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRH 58
Query: 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGP---------EH-SIFVGDLAPD 127
A L NG + G E ++NWA+ +K+ + +H +FVGDL+P+
Sbjct: 59 AAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPE 116
Query: 128 VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187
+T ++ F + + + A+VV D TG+SKGYGFV F ++ + A+ +M G + R
Sbjct: 117 ITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 188 PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTE 247
+R + AT K A K+TY + +N T++ G + +TE
Sbjct: 176 QIRTNWATRKP--------PAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 248 EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ ++QTF FG+I+ +++ +G FV+F + SA AI+ + G I V+ WG++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKET 287
Query: 308 -DVTGSVAAQVDP------SQWNAYYGYGQGYDAYAYGAAQDPSLYAYGAYA 352
D+ V Q QW +YG Q Y Q P AYG Y
Sbjct: 288 LDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVP---AYGMYG 336
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
+ +LW+G+L+ + DE+++ FA GE VV I++IR+KITG+ GYGFVE A ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 82 LQTYNGTPMPGTE--QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRS 139
L+ NG P+PG + F+L+ +++G + S+FV DL PDV D +L E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHY 116
Query: 140 QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRPMRISAATPK 197
+ S K+V D N G SK GFV F E E+ RA+ ++ G + +R+S A+ +
Sbjct: 117 HFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 32/193 (16%)
Query: 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAM 176
+S+++G+L P + + + F +V +++ D TG++ GYGFV+ D+ R +
Sbjct: 2 NSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCL 61
Query: 177 TEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTI 236
++NG +P+ ATP K ++ ++ Y ++ ++
Sbjct: 62 RKVNG-----KPL--PGATPPK------RFKLSRSNYGKQGESSTF------------SL 96
Query: 237 FVGNLDPNVTEEELKQTF-LHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQ 290
FV +L P+V + L + F HF + KI + + CGFV F + + A++ +Q
Sbjct: 97 FVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQ 156
Query: 291 GHM-IGQQQVRIS 302
G +G++ +R+S
Sbjct: 157 GATGLGKKALRLS 169
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 140/288 (48%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + + A ER L+
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 112 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 165
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 166 LSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 222
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T I++ N+DP+VTEEE ++ F FGEI +
Sbjct: 223 KFDEMKANF--------------------TNIYIKNIDPDVTEEEFRKIFEQFGEITSAT 262
Query: 265 I---PMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ P G RG GFV ++ SA+ A+ M + Q++ + +K+
Sbjct: 263 LSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKK 310
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 66/250 (26%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAE----- 79
++I ++ E F GE+ S + R+ G+ G+GFV + +H +A+
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDP-EGKSRGFGFVNYSTHESAQAAVDE 291
Query: 80 ------RVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLL 133
+ + Y G E+ L ++ +++V +L DV D L
Sbjct: 292 MHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKL 351
Query: 134 QETFRSQYPSVRGAKVVTD---------PNT----------------------------- 155
+E F Y ++ AKV+ D P++
Sbjct: 352 RELF-GPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDE 410
Query: 156 --------------GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
G+SKG+GFV F +E ++A+TEMN + +P+ ++ A +K
Sbjct: 411 EKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ-RKDVR 469
Query: 202 FQQQYAAVKA 211
Q A+++A
Sbjct: 470 RSQLEASIQA 479
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 207 AAVKATYPVAAYTTPVQVFPADNDITNT-TIFVGNLDPNVTEEELKQTFLHFGEIVNVKI 265
AA + V A + P +N+ ++ +++VG LDP+VTE L + F G++ ++++
Sbjct: 23 AAATSAPEVTAVESSSPTSPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRV 82
Query: 266 ------PMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
G +V + A E A+ + +I + RI W ++
Sbjct: 83 CRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQR 129
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 145/306 (47%), Gaps = 38/306 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL+ E +L F+ G V SI++ R+ IT GY +V F H A + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N TP+ G + R+ W+ ++ +G +IF+ +L PD+ + L +TF S + +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDI 152
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+K+ TD N G+SKG+GFV F +E A+ +NG+ + + + ++ +K
Sbjct: 153 LSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER--DS 209
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
Q KA Y T ++V N++ T+E+ ++ F FG IV+
Sbjct: 210 QLEETKAHY--------------------TNLYVKNINSETTDEQFQELFAKFGPIVSAS 249
Query: 265 IPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQVDP 319
+ +G GFV + A +A+ + + +++ + +K++ V +
Sbjct: 250 LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKK--- 306
Query: 320 SQWNAY 325
Q+ AY
Sbjct: 307 -QYEAY 311
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 139/305 (45%), Gaps = 35/305 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I +L D L F+ G+++S KI ++ G+ +G+GFV F AA+ +
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDA 185
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHS------IFVGDLAPDVTDYLLQETFR 138
NG + G E + + + K D+ E + ++V ++ + TD QE F
Sbjct: 186 LNGMLLNGQEI-----YVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF- 239
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
+++ + A + D + G+ KG+GFV + + +A+ +N + + + A K
Sbjct: 240 AKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
Query: 198 -KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
+ ++QY A + +A Y +FV NLD +V +E+L++ F
Sbjct: 299 ERMHVLKKQYEAYRLE-KMAKYQ-------------GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 257 FGEIVNVKIP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+G I + K+ +G GFV F+ A +AI ++ + + ++ +++DV
Sbjct: 345 YGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRR 404
Query: 312 SVAAQ 316
S AQ
Sbjct: 405 SQLAQ 409
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 18/193 (9%)
Query: 20 LEEVR----TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75
LEE + L++ ++ + FA G +VS + ++ G+ +G+GFV + H
Sbjct: 211 LEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKH 269
Query: 76 AAAERVLQTYNGTPMPGTE--------QNFRLNWASFGIGEKRPDAGPEH---SIFVGDL 124
A + ++ N + + G + +N R++ R + ++ ++FV +L
Sbjct: 270 EDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNL 329
Query: 125 APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184
V D L+E F + Y ++ AKV+ N G+SKG+GFV F E +A+TE N
Sbjct: 330 DDSVDDEKLEEEF-APYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIV 387
Query: 185 STRPMRISAATPK 197
+ +P+ ++ A K
Sbjct: 388 AGKPLYVAIAQRK 400
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEA 285
++ +++VG+L+P+V+E L F G + ++++ G +V F + +A
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 286 ILRMQGHMIGQQQVRISWGRK 306
I ++ I + RI W ++
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQR 116
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + + A ER L+
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 110 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 163
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 164 LSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 220
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T +++ N+D +VTEEE ++ F FGEI +
Sbjct: 221 KFEEMKANF--------------------TNVYIKNIDQDVTEEEFRELFEKFGEITSAT 260
Query: 265 IP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ RG GFV F+ SA+ A+ M I Q++ + +K+
Sbjct: 261 LSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK 308
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 156 GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197
G+SKG+GFV F +E ++A+TEMN + +P+ ++ A K
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEAI 286
+ +++VG LDP+VTE L + F G++ ++++ G +V + A E A+
Sbjct: 48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 107
Query: 287 LRMQGHMIGQQQVRISWGRK 306
+ +I + RI W ++
Sbjct: 108 EDLNYTLIKGKPCRIMWSQR 127
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 158/363 (43%), Gaps = 36/363 (9%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + A ER L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 103 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 156
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 157 LSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 213
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T I++ N+DP V +EE ++ F FGEI +
Sbjct: 214 KFEEMKANF--------------------TNIYIKNIDPEVEDEEFRKLFEKFGEITSAT 253
Query: 265 IP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG-RKQDVTGSVAAQVD 318
+ RG GFV F+ SA+ A+ M + Q++ + +K + + Q +
Sbjct: 254 LSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYE 313
Query: 319 PSQWNAYYGYGQGYDAYAYGAAQDPSLYAYGAYAGYPQYAQQAEGVTDMAAVASALPTME 378
++ Y QG + Y D G A+ + D A V +A P E
Sbjct: 314 AARMEKASKY-QGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESE 372
Query: 379 QRE 381
+E
Sbjct: 373 TKE 375
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 78/255 (30%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I ++ ++ F GE+ S + R+ G+ G+GFV F +H +A+ ++
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEE 282
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH------------------SIFVGDLAP 126
N ++ R G +K+ + E +++V +L
Sbjct: 283 MN-------DKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTD 335
Query: 127 DVTDYLLQETFRSQYPSVRGAKVVTD--------PNT----------------------- 155
DV D L+E F Y ++ AKV+ D P +
Sbjct: 336 DVDDDKLRELF-GPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAE 394
Query: 156 -------------------GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196
G+SKG+GFV F +E ++A+TEMN + +P+ ++ A
Sbjct: 395 EKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ- 453
Query: 197 KKTTGFQQQYAAVKA 211
+K Q A+++A
Sbjct: 454 RKDVRRSQLEASIQA 468
Score = 38.5 bits (88), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEAI 286
+ +++VG LDP+VTE L + F G++ ++++ G +V + A E A+
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 287 LRMQGHMIGQQQVRISWGRK 306
+ +I + RI W ++
Sbjct: 101 DELNYTLIKGKPCRIMWSQR 120
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 14/146 (9%)
Query: 66 GYGFVEFVSHAAAERVLQTYNGTPMPGT-------------EQNFRLNWASFGIGEKRPD 112
GY FVEF + A+ L + N TP+P ++ FRLNWAS +
Sbjct: 129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIP 187
Query: 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172
+ PE S+FVGDL+P T+ L F++++ SV+ +V+TDP TG S+ +GFV+F DE+ER
Sbjct: 188 STPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDER 247
Query: 173 NRAMTEMNGVFCSTRPMRISAATPKK 198
RA+ EM+G + R +R++ ATP+
Sbjct: 248 RRALIEMSGKWFQGRALRVAYATPRN 273
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 53/78 (67%)
Query: 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAIL 287
+ D TNTT+FVG L P TE +L+ F FG I+NV+IP G+ CGFV+F R AE +I
Sbjct: 354 NTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQ 413
Query: 288 RMQGHMIGQQQVRISWGR 305
+QG ++G +R+SWGR
Sbjct: 414 GLQGFIVGGSPIRLSWGR 431
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 25/181 (13%)
Query: 139 SQYPSVRGAKVVTDPNTGR--SKGYGFVKFLDENERNRAMTEMNGVFCST--RPMRISAA 194
SQ ++ G + DP+T + GY FV+F + + A++ +N P S
Sbjct: 107 SQMININGISFI-DPSTTQLHHAGYCFVEFETQKDAKFALS-LNATPLPNFYSPTTNSQT 164
Query: 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTF 254
P F+ +A+ AT + +TP ++FVG+L P TE +L F
Sbjct: 165 NPTFKRTFRLNWAS-GATLQSSIPSTP-----------EFSLFVGDLSPTATEADLLSLF 212
Query: 255 -LHFGEIVNVKI---PM---GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
F + V++ P+ R GFV+F A++ M G + +R+++ +
Sbjct: 213 QTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
Query: 308 D 308
+
Sbjct: 273 N 273
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNK 59
E RTLW+GDL FDE + ++ + V +K+IR K
Sbjct: 31 EPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAK 69
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177
++FVG L P T++ L+ F+ P + V PN K GFVKF + ++
Sbjct: 361 TVFVGGLVPKTTEFQLRSLFKPFGPILN----VRIPN---GKNCGFVKFEKRIDAEASIQ 413
Query: 178 EMNGVFCSTRPMRISAATPKKTTG 201
+ G P+R+S P +
Sbjct: 414 GLQGFIVGGSPIRLSWGRPSSSNA 437
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAA---VKATYPVAAYTTPVQVF 225
AA + A P++ P Q+F
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF 211
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 41/213 (19%)
Query: 106 IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVK 165
I E+ DA +++VG L V++ LL E F P V + D TG+ +GYGFV+
Sbjct: 6 ISERNQDA----TVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVE 60
Query: 166 FLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVF 225
FL E + + A+ MN + +P+R++ A+ A+ + V
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKAS---------------------AHNKNLDV- 98
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-------GRGCGFVQFAA 278
IF+GNLDP + E+ L TF FG I+ M +G F+ FA+
Sbjct: 99 -------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 279 RASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+++ AI M G + + + +S+ K+D G
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARASAEEAI 286
+ T++VG LD V+E L + FL G +VN +P R G GFV+F + A+ AI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 287 LRMQGHMIGQQQVRISWGRKQDVTGSVAAQV 317
M + + +R++ + V A +
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANI 102
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAA---VKATYPVAAYTTPVQVF 225
AA + A P++ P Q+F
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF 211
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 41/213 (19%)
Query: 106 IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVK 165
I E+ DA +++VG L V++ LL E F P V + D TG+ +GYGFV+
Sbjct: 6 ISERNQDA----TVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVE 60
Query: 166 FLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVF 225
FL E + + A+ MN + +P+R++ A+ A+ + V
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKAS---------------------AHNKNLDV- 98
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-------GRGCGFVQFAA 278
IF+GNLDP + E+ L TF FG I+ M +G F+ FA+
Sbjct: 99 -------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 279 RASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+++ AI M G + + + +S+ K+D G
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARASAEEAI 286
+ T++VG LD V+E L + FL G +VN +P R G GFV+F + A+ AI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 287 LRMQGHMIGQQQVRISWGRKQDVTGSVAAQV 317
M + + +R++ + V A +
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANI 102
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
T+++G L E L F G VV+ + ++++TGQ +GYGFVEF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+N AS K D G +IF+G+L P++ + LL +TF + +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVG--ANIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+ K++ DP+TG SKGY F+ F + + A+ MNG + RP+ +S A K + G +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187
Query: 205 QYAA---VKATYPVAAYTTPVQVF 225
AA + A P++ P Q+F
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLF 211
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 41/213 (19%)
Query: 106 IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVK 165
I E+ DA +++VG L V++ LL E F P V + D TG+ +GYGFV+
Sbjct: 6 ISERNQDA----TVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVE 60
Query: 166 FLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVF 225
FL E + + A+ MN + +P+R++ A+ A+ + V
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKAS---------------------AHNKNLDV- 98
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-------GRGCGFVQFAA 278
IF+GNLDP + E+ L TF FG I+ M +G F+ FA+
Sbjct: 99 -------GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 279 RASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+++ AI M G + + + +S+ K+D G
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARASAEEAI 286
+ T++VG LD V+E L + FL G +VN +P R G GFV+F + A+ AI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 287 LRMQGHMIGQQQVRISWGRKQDVTGSVAAQV 317
M + + +R++ + V A +
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVGANI 102
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 136/288 (47%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + + A ER L+
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 113 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNI 166
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 167 LSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 223
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T +++ N+D VT+EE ++ F FGEI +
Sbjct: 224 KFEEMKANF--------------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSAT 263
Query: 265 IP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ RG GFV F+ SA+ A+ M I Q++ + +K+
Sbjct: 264 LSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK 311
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 64/246 (26%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I ++ + F GE+ S + R++ G+ G+GFV F +H +A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 85 YNGTPMPGT-------------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDY 131
N + G E+ R + + + + G +++V +L DV D
Sbjct: 293 MNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG--VNLYVKNLTDDVDDE 350
Query: 132 LLQETFRSQYPSVRGAKVVTDPNT------------------------------------ 155
L+E F S + ++ AKV+ D T
Sbjct: 351 KLRELF-SPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEE 409
Query: 156 ----------GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ 205
G+SKG+GFV F +E ++A+TEMN + +P+ ++ A +K Q
Sbjct: 410 EPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ-RKDVRRSQL 468
Query: 206 YAAVKA 211
A+++A
Sbjct: 469 EASIQA 474
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTF 254
TP+ T V A + TTP P + +++VG LDP+VTE L + F
Sbjct: 18 TPEATNAAATSAPEVTAVESASPSTTPSASQP-----HSASLYVGELDPSVTEAMLYELF 72
Query: 255 LHFGEIVNVKI------PMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
G++ ++++ G +V + A E A+ + +I + RI W ++
Sbjct: 73 SSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQR 130
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E +L F+ G V SI++ R+ IT GY +V F H AA+ ++
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N TP+ G + R+ W+ ++ AG +IF+ +L PD+ + L +TF S + ++
Sbjct: 96 LNFTPIKG--KLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNI 149
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
+KV TD TG+SKG+G+V F ++ + A+ +NG+ + + + + KK +
Sbjct: 150 LSSKVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKER--ES 206
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE---IV 261
++ +KA + T +++ N++ T++E ++ FG+ +V
Sbjct: 207 KFEEMKANF--------------------TNVYIKNINTETTDKEFEELVAKFGKTDSVV 246
Query: 262 NVKIPMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ P G +G GFV F A + + + Q + ++ +K+
Sbjct: 247 LERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKK 294
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 138/305 (45%), Gaps = 35/305 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I +L D L F+ G ++S K+ ++ TG+ +G+G+V F +A +
Sbjct: 124 NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDA 182
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH------SIFVGDLAPDVTDYLLQETFR 138
NG + G E + + +K ++ E ++++ ++ + TD +E
Sbjct: 183 LNGMLLNGQEI-----YVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV- 236
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK- 197
+++ + P G +KG+GFV F++ + + + E+N +P+ ++ A K
Sbjct: 237 AKFGKTDSVVLERTPE-GENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKY 295
Query: 198 -KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
+ ++QY A + +A Y +F+ NLD ++ +++L++ F
Sbjct: 296 ERQQELKKQYEATRME-KMAKYQ-------------GINLFIKNLDDSIDDKKLEEEFAP 341
Query: 257 FGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
+G I + K+ +G GFV F+ A +AI ++ + + ++ +++DV
Sbjct: 342 YGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRR 401
Query: 312 SVAAQ 316
S AQ
Sbjct: 402 SQLAQ 406
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 44/217 (20%)
Query: 95 QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN 154
+N L G E+ S++VGDL P V++ L + F S +V +V D
Sbjct: 13 ENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIF-SPIGAVSSIRVCRDAI 71
Query: 155 TGRSKGYGFVKFLDENERNRAMTEMN-----GVFCSTRPMRISAATPKKTTGFQQQYAAV 209
T S GY +V F D + A+ ++N G C + + KK G
Sbjct: 72 TKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAG-------- 123
Query: 210 KATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-- 267
IF+ NL P++ + L TF FG I++ K+
Sbjct: 124 -------------------------NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE 158
Query: 268 ---GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301
+G G+V F SA EAI + G ++ Q++ +
Sbjct: 159 TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASA 282
++ + +++VG+LDP+V+E L F G + ++++ G +V F +A
Sbjct: 30 SETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAA 89
Query: 283 EEAILRMQGHMIGQQQVRISWGRK 306
+ AI ++ I + RI W ++
Sbjct: 90 KTAIEKLNFTPIKGKLCRIMWSQR 113
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 136/288 (47%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + + A ER L+
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 113 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNI 166
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 167 LSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 223
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T +++ N+D VT+EE ++ F FGEI +
Sbjct: 224 KFEEMKANF--------------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSAT 263
Query: 265 IP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ RG GFV F+ SA+ A+ M I Q++ + +K+
Sbjct: 264 LSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK 311
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 62/244 (25%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I ++ + F GE+ S + R++ G+ G+GFV F +H +A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 85 YNGTPMPGT-------------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDY 131
N + G E+ R + + + + G +++V +L DV D
Sbjct: 293 MNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG--VNLYVKNLTDDVDDE 350
Query: 132 LLQETFRSQYPSVRGAKVVTDPNT------------------------------------ 155
L+E F S + ++ AKV+ D T
Sbjct: 351 KLRELF-SPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEA 409
Query: 156 --------GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYA 207
G+SKG+GFV F +E ++A+TEMN + +P+ ++ A +K Q A
Sbjct: 410 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ-RKDVRRSQLEA 468
Query: 208 AVKA 211
+++A
Sbjct: 469 SIQA 472
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 207 AAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI- 265
AA A A + P+ N + +++VG LDP+VTE L + F G++ ++++
Sbjct: 25 AATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC 84
Query: 266 -----PMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
G +V + A E A+ + +I + RI W ++
Sbjct: 85 RDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQR 130
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 136/288 (47%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G + SI++ R+ +T GY +V + + A ++ +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ +G +IF+ +L P + + L ETF S + V
Sbjct: 111 LNYAEING--RPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETF-STFGEV 164
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D N G S+G+GFV F +E++ A+ +NG+ + + ++ PKK +
Sbjct: 165 LSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL 223
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A KA + T I+V N+D T+EE +Q F +GEIV+
Sbjct: 224 EEA--KANF--------------------TNIYVKNIDVETTDEEFEQLFSQYGEIVSAA 261
Query: 265 IPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ +G GFV F +A +A+ + G Q + + +K+
Sbjct: 262 LEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKK 309
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 25/300 (8%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I +L D L F+ GEV+S K+ ++ G G+GFV F + A+ ++
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEA 197
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHS-IFVGDLAPDVTDYLLQETFRSQYPS 143
NG M G E ++ K +A + I+V ++ + TD ++ F SQY
Sbjct: 198 VNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLF-SQYGE 256
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--KTTG 201
+ A + D G+ KG+GFV F+D N +A+ E+NG ++ + + A K +
Sbjct: 257 IVSAALEKDA-EGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
++QY + +A + +F+ NLD ++ +E+LK+ F +G I
Sbjct: 316 LKKQYEQYRLE-KLAKFQ-------------GVNLFIKNLDDSIDDEKLKEEFAPYGTIT 361
Query: 262 NVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQ 316
+ ++ +G GFV F++ A +A+ ++ + + ++ +++DV S AQ
Sbjct: 362 SARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQ 421
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEA 285
N +++VG LDPN+TE L F G I ++++ G +V + + ++A
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 286 ILRMQGHMIGQQQVRISWGRK 306
I + I + RI W +
Sbjct: 108 IQELNYAEINGRPCRIMWSER 128
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G V SI++ R+ +T + GY +V + + A E+ L+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ AG +IF+ +L + + L +TF + + ++
Sbjct: 121 LNYTLIKG--RPCRIMWSQRDPALRKTGAG---NIFIKNLDAAIDNKALHDTF-AAFGNI 174
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D + G SKGYGFV + + ++A+ +NG+ + + + + PKK Q
Sbjct: 175 LSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR--QS 231
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T ++V N++ VT+EE ++ F FGE+ +
Sbjct: 232 KFEEMKANF--------------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSS 271
Query: 265 IP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ RG GFV F +A +A+ + G Q + + +K+
Sbjct: 272 LARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKK 319
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 66/249 (26%)
Query: 11 YHQHHHPMT-----LEEVR----TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT 61
Y HH P EE++ +++ ++ + FA GEV S + R++
Sbjct: 219 YVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-E 277
Query: 62 GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-------------EQNFRLNWASFGIGE 108
G+ G+GFV F +H AA + + NG G E+ R ++ + + +
Sbjct: 278 GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEK 337
Query: 109 KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDP--------------- 153
G ++++ +L DV D L+ F S+Y + AKV+ D
Sbjct: 338 ANKYQG--VNLYIKNLGDDVDDDKLRAMF-SEYGPITSAKVMRDSLIEGSEEKDEKDKEN 394
Query: 154 -------------------------NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188
G+SKG+GFV F + ++ +A+TEMN +P
Sbjct: 395 KKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKP 454
Query: 189 MRISAATPK 197
+ ++ A K
Sbjct: 455 LYVALAQRK 463
Score = 39.3 bits (90), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEAI 286
+ +++VG LDP+VTE L + F G + ++++ G +V + A E+A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 287 LRMQGHMIGQQQVRISWGRK 306
+ +I + RI W ++
Sbjct: 119 EELNYTLIKGRPCRIMWSQR 138
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + + A ER L+
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 109 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNI 162
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 163 LSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 219
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T +++ NLD ++EEE +Q F FGEI +
Sbjct: 220 KFEEMKANF--------------------TNVYIKNLDQEISEEEFRQMFEKFGEITSAT 259
Query: 265 IP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ RG GFV ++ SA+ A+ M + Q++ + +K+
Sbjct: 260 LSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKK 307
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 68/250 (27%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I +L E F GE+ S + R++ G+ G+GFV + +H +A+ +
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ-EGKSRGFGFVNYSTHDSAQAAVDE 288
Query: 85 YNGTPMPGT-------------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDY 131
N + G E+ R + + + + G +++V +L D+ D
Sbjct: 289 MNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG--VNLYVKNLTDDIDDE 346
Query: 132 LLQETFRSQYPSVRGAKVVTDPNT------------------------------------ 155
L+E F + Y ++ AKV+ D N
Sbjct: 347 KLREMF-APYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGD 405
Query: 156 --------------GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTG 201
G+SKG+GFV F +E ++A+TEMN + +P+ ++ A +K
Sbjct: 406 DQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQ-RKDVR 464
Query: 202 FQQQYAAVKA 211
Q A+++A
Sbjct: 465 RSQLEASIQA 474
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAEEAI 286
+ +++VG LDP+VTE L + F G++ ++++ G +V + A E A+
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 287 LRMQGHMIGQQQVRISWGRK 306
+ +I + RI W ++
Sbjct: 107 EDLNYTLIKGKPCRIMWSQR 126
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N SKGYGFV F + RA+ +MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER--EA 181
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A + T +++ N ++ +E LK+ F FG ++VK
Sbjct: 182 ELGARAKEF--------------------TNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ +G GFV F A++A+ M G + +Q+ + +K+
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 33/297 (11%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ + GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITN---TTIFVGNLDPNVTEEELKQTFL 255
T ++++ +K + IT ++V NLD + +E L++ F
Sbjct: 273 QTELKRKFEQMK-----------------QDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 256 HFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
FG I + K+ M +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKAT 212
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRAV 392
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN +P+RI + Q P+
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----------------------------QRDPSLRKSGVG 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
IF+ NLD ++ + L TF FG I++ K+ +G GFV F + +AE AI +M
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L E L F+ G+V SI++ R+ +T + GY +V + + A ER L+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ G ++F+ +L + + L +TF + + ++
Sbjct: 115 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 168
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV D G SKGYGFV + N A+ +NG+ + + + + KK Q
Sbjct: 169 LSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR--QS 225
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
++ +KA + T +++ NLD + ++E ++ F FGEI +
Sbjct: 226 KFEEMKANF--------------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSAT 265
Query: 265 IP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ RG GFV F+ SA+ A+ M I Q++ + +K+
Sbjct: 266 LSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKK 313
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 96/260 (36%), Gaps = 82/260 (31%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I +L D++ F GE+ S + R++ G+ G+GFV F +H +A+ ++
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVEE 294
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH------------------SIFVGDLAP 126
N ++ R G +K+ + E +++V +L
Sbjct: 295 MN-------DKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 127 DVTDYLLQETF------------------RSQYPSVRGAKVVTDPNT------------- 155
D+ D L+E F R Q P G + D
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEK 407
Query: 156 ------------------------GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191
G+SKG+GFV F +E ++A+TEMN + +P+ +
Sbjct: 408 AEEKPSESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 467
Query: 192 SAATPKKTTGFQQQYAAVKA 211
+ A +K Q A+++A
Sbjct: 468 ALAQ-RKDVRRSQLEASIQA 486
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAAR 279
PA N + +++VG LDP+VTE L + F G++ ++++ G +V +
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 280 ASAEEAILRMQGHMIGQQQVRISWGRK 306
A E A+ + +I + RI W ++
Sbjct: 106 ADGERALEDLNYTLIKGKPCRIMWSQR 132
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N SKGYGFV F + RA+ +MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER--EA 181
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A + T +++ N ++ +E LK+ F FG ++VK
Sbjct: 182 ELGARAKEF--------------------TNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ +G GFV F A++A+ M G + +Q+ + +K+
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 33/297 (11%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ + GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L+E F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITN---TTIFVGNLDPNVTEEELKQTFL 255
T ++++ +K + IT ++V NLD + +E L++ F
Sbjct: 273 QTELKRKFEQMK-----------------QDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 256 HFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
FG I + K+ M +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKAT 212
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRAV 392
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN +P+RI + Q P+
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----------------------------QRDPSLRKSGVG 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
IF+ NLD ++ + L TF FG I++ K+ +G GFV F + +AE AI +M
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 141/294 (47%), Gaps = 27/294 (9%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ +GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
NG + + F + S E A + ++++ + D+ D L+E F +
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GK 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
Y KV+TD N G+SKG+GFV F + +A+ EMNG + + M + A K +
Sbjct: 214 YGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
T ++++ +K + Y ++V NLD + +E L++ FL FG
Sbjct: 273 QTELKRKFEQMKQDR-ITRYQ-------------GVNLYVKNLDDGIDDERLRKEFLPFG 318
Query: 259 EIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ M +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N SKGYGFV F + RA+ +MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER--EA 181
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A + T +++ N ++ +E LK+ F +G ++VK
Sbjct: 182 ELGARAKEF--------------------TNVYIKNFGDDMNDERLKEMFGKYGPALSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ +G GFV F A++A+ M G + + + + +K+
Sbjct: 222 VMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 21/212 (9%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + ++ L F G +S+K++ + G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG M G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFLP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKATYPV 215
++ A K+ T + Q+ A+V+ PV
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRVPNPV 395
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN RP+RI + Q P+
Sbjct: 68 ALDTMNFDVIKGRPVRIMWS----------------------------QRDPSLRKSGVG 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
IF+ NLD ++ + L TF FG I++ K+ +G GFV F + +AE AI +M
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 34/292 (11%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
E +L++G+L +E L F+ G+V SI++ R+ ++ + GY +V + E+
Sbjct: 64 ENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEK 123
Query: 81 VLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140
++ N TP+ G + R+ W+ +R G +IF+ +L P + + L +TF S
Sbjct: 124 AIEELNYTPVEG--RPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTF-SA 177
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200
+ + KV TD + G+SK +GFV + E A+ +NG+ + R + + KK
Sbjct: 178 FGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDR 236
Query: 201 GFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI 260
+ + +KA Y T I+V N+D TE+E ++ F FG+I
Sbjct: 237 --ESKLEEMKANY--------------------TNIYVKNIDLAYTEKEFEELFAPFGKI 274
Query: 261 VNVKIP-----MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
++ + +G GFV F +A +A+ + I Q++ + +K+
Sbjct: 275 TSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKK 326
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 142/305 (46%), Gaps = 35/305 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I +L D L F+ G+++S+K+ + + GQ + +GFV + + AA+ +++
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDL-GQSKCFGFVHYETEEAAQAAIES 214
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH------SIFVGDLAPDVTDYLLQETFR 138
NG + N R + + +K ++ E +I+V ++ T+ +E F
Sbjct: 215 VNGMLL-----NDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELF- 268
Query: 139 SQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198
+ + + + D G+SKG+GFV F + +A+ E+N + + + + A K+
Sbjct: 269 APFGKITSIYLEKDA-EGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKR 327
Query: 199 --TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256
T ++QY AV+ ++ Y +FV NLD + E+L++ F
Sbjct: 328 ERTEELKKQYEAVRLEK-LSKYQ-------------GVNLFVKNLDEQIDSEKLEEEFKP 373
Query: 257 FGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311
FG I + K+ + +G GFV F+ A +AI M M+ + + ++ +++DV
Sbjct: 374 FGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRR 433
Query: 312 SVAAQ 316
S Q
Sbjct: 434 SQLEQ 438
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 20 LEEVR----TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75
LEE++ +++ ++ + E FA G++ SI + ++ G+ +G+GFV F H
Sbjct: 240 LEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEH 298
Query: 76 AAAERVLQTYNGTPMPGT-----------EQNFRLNWASFGIGEKRPDAGPEHSIFVGDL 124
AA + ++ N + G E+ L + ++ ++FV +L
Sbjct: 299 EAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNL 358
Query: 125 APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184
+ L+E F+ + ++ +KV+ D + G+SKG+GFV F E +A+TEMN
Sbjct: 359 DEQIDSEKLEEEFKP-FGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMV 416
Query: 185 STRPMRISAATPK--KTTGFQQQYAA---VKATYPVAAYTTPVQVFP 226
+ +P+ ++ A K + + +QQ A ++ AA P Q P
Sbjct: 417 NGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMP 463
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 139/288 (48%), Gaps = 34/288 (11%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++G+L+ E L F+ G V SI++ R+ IT GY +V F H A + ++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N T + G + R+ W+ ++ +G +I++ +L P + + L ETF S + ++
Sbjct: 99 LNYTLIKG--KPCRIMWSQRDPSLRKKGSG---NIYIKNLHPAIDNKSLHETF-STFGNI 152
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KV TD N G S+G+GFV F +E++ A+ ++G+ + + + ++ KK Q
Sbjct: 153 LSCKVATDEN-GVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDR--QS 209
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ VKA + T ++V N+D ++EE ++ F +G+I +
Sbjct: 210 KLEEVKAKF--------------------TNVYVKNIDQETSQEEFEELFGKYGKITSAV 249
Query: 265 IPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ RG GFV F A+A +A+ + Q++ + +K+
Sbjct: 250 LEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKK 297
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 135/300 (45%), Gaps = 25/300 (8%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
++I +L D L F+ G ++S K+ ++ G G+GFV F + + A ++
Sbjct: 127 NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEA 185
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHS-IFVGDLAPDVTDYLLQETFRSQYPS 143
+G M E L+ + K + + + ++V ++ + + +E F +Y
Sbjct: 186 VDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELF-GKYGK 244
Query: 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--KTTG 201
+ A V+ + G+ +G+GFV F D +A+ E+N + + + + A K +
Sbjct: 245 ITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQE 303
Query: 202 FQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261
++QY A + +A Y +FV NLD ++ +E+LK+ F FG I
Sbjct: 304 LKKQYEAARLE-KLAKYQ-------------GVNLFVKNLDDSIDDEKLKEEFAPFGTIT 349
Query: 262 NVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAAQ 316
+ K+ RG GFV F+ A +AI ++ + + ++ ++++V + AQ
Sbjct: 350 SAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQ 409
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 20 LEEVR----TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75
LEEV+ +++ ++ + F G++ S ++ G+ G+GFV F H
Sbjct: 211 LEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDH 269
Query: 76 AAAERVLQTYNGTPMPGTE-------------QNFRLNWASFGIGEKRPDAGPEHSIFVG 122
AAA + + N G + Q + + + + + G ++FV
Sbjct: 270 AAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGV--NLFVK 327
Query: 123 DLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182
+L + D L+E F + + ++ AKV+ D TG S+G+GFV F E +A+TE N
Sbjct: 328 NLDDSIDDEKLKEEF-APFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQ 385
Query: 183 FCSTRPMRISAATPKKT 199
+ +P+ ++ A K+
Sbjct: 386 IVAGKPLYVAIAQRKEV 402
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PMGRGCGFVQFAARASAE 283
+ + +++VG L+P V+E L F G + ++++ G +V F +
Sbjct: 34 ETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGP 93
Query: 284 EAILRMQGHMIGQQQVRISWGRK 306
+AI ++ +I + RI W ++
Sbjct: 94 KAIEQLNYTLIKGKPCRIMWSQR 116
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L+IGDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ G ++ G ++F+ +L + + L +TF S + +
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTF-SAFGDI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D S+GYGFV F + NRA+ MNG+ + R + + ++ +
Sbjct: 126 LSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE- 182
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
Y V F T +++ N ++ ++ LK+ F FG ++VK
Sbjct: 183 -------------YGAKVMEF--------TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ M RG GFV + A++A+ M G + + V + +K+
Sbjct: 222 VMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 43/302 (14%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G+++S K++ ++ + GYGFV F + AA R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIG------EKRPDAGPE----HSIFVGDLAPDVTDYL 132
QT NG LN +G E+ + G + ++++ + D+ D
Sbjct: 156 QTMNG---------MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206
Query: 133 LQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192
L+E F S + + KV+ D N+GRS+G+GFV + + E +A+TEMNG + R + +
Sbjct: 207 LKEIF-SAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG 264
Query: 193 AATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
A + + ++++ +K N ++V NLD + ++ L
Sbjct: 265 RAQKRIERQGELKRKFEQIKQER--------------INRYQGVNLYVKNLDDGIDDDRL 310
Query: 251 KQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
++ F +G I + K+ +G GFV F++ A +A+ M G ++ + + ++ ++
Sbjct: 311 RKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 307 QD 308
++
Sbjct: 371 KE 372
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S+++GDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN RP+RI + ++ G ++
Sbjct: 68 ALDTMNFEVIKGRPIRIMWS--QRDPGLRKSGVG-------------------------- 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
+F+ NLD ++ + L TF FG+I++ K+ RG GFV F + +A AI M
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E ++I + D+ L F+ G +S+K++ + +G+ G+GFV + +H A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 82 LQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTD 130
+ NG + G E+ L I ++R + +++V +L + D
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F S Y ++ KV+T+ G SKG+GFV F E +A+TEMNG ST+P+
Sbjct: 308 DRLRKEF-SPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRA 391
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N SKGYGFV F + RA+ +MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER--EA 181
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A + T +++ N ++ +E LK F FG ++VK
Sbjct: 182 ELGARAKEF--------------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ +G GFV F A++A+ M G + +Q+ + +K+
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 143/297 (48%), Gaps = 33/297 (11%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ + GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITN---TTIFVGNLDPNVTEEELKQTFL 255
T ++++ +K + IT ++V NLD + +E L++ F
Sbjct: 273 QTELKRKFEQMK-----------------QDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 256 HFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
FG I + K+ M +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKAT 212
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRAV 392
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN +P+RI + Q P+
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----------------------------QRDPSLRKSGVG 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
IF+ NLD ++ + L TF FG I++ K+ +G GFV F + +AE AI +M
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N SKGYGFV F + RA+ +MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER--EA 181
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A + T +++ N ++ +E LK F FG ++VK
Sbjct: 182 ELGARAKEF--------------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ +G GFV F A++A+ M G + +Q+ + +K+
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 143/297 (48%), Gaps = 33/297 (11%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ + GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITN---TTIFVGNLDPNVTEEELKQTFL 255
T ++++ +K + IT ++V NLD + +E L++ F
Sbjct: 273 QTELKRKFEQMK-----------------QDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 256 HFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
FG I + K+ M +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKAT 212
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRAV 392
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN +P+RI + Q P+
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----------------------------QRDPSLRKSGVG 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
IF+ NLD ++ + L TF FG I++ K+ +G GFV F + +AE AI +M
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G V+SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N SKGY FV F + ++A+ +MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER--EA 181
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A + T +++ N V +E LK+ F FG+ ++VK
Sbjct: 182 ELGAKAKEF--------------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
Query: 265 I---PMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ P G +G GFV + A +A+ M G I + + + +K+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 144/294 (48%), Gaps = 27/294 (9%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ +GY FV F + AA++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + +V D L+E F SQ
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
+ KV+ DPN G+SKG+GFV + + N+A+ EMNG S + + + A K +
Sbjct: 214 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258
++++ +K ++ Y +++ NLD + +E+L++ F FG
Sbjct: 273 QAELKRKFEQLKQER-ISRYQ-------------GVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 259 EIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
I + K+ + +G GFV F++ A +A+ M G ++G + + ++ ++++
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 21/208 (10%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F+ G+ +S+K++R+ G+ +G+GFV + H A +
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
++ NG + G E+ L + ++R ++++ +L +
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + S+ AKV+ + GRSKG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 364 YVALAQRKEERKAHLTNQYMQRVAGMRA 391
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL DVT+ +L E F P V +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN +P+RI + Q P+
Sbjct: 68 ALDTMNFDVIKGKPIRIMWS----------------------------QRDPSLRKSGVG 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
+F+ NLD ++ + L TF FG I++ K+ +G FV F + +A++AI +M
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ IT + GY +V F A AER L T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ ++ G +IF+ +L + + L +TF S + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D N SKGYGFV F + RA+ +MNG+ + R + + +K +
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER--EA 181
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
+ A + T +++ N ++ +E LK F FG ++VK
Sbjct: 182 ELGARAKEF--------------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ +G GFV F A++A+ M G + +Q+ + +K+
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 143/297 (48%), Gaps = 33/297 (11%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ + GYGFV F + AAER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEH--SIFVGDLAPDVTDYLLQETFRSQ 140
+ NG + + F + S E A + ++++ + D+ D L++ F
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 141 YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK--K 198
P++ KV+TD +G+SKG+GFV F + +A+ EMNG + + + + A K +
Sbjct: 215 GPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Query: 199 TTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITN---TTIFVGNLDPNVTEEELKQTFL 255
T ++++ +K + IT ++V NLD + +E L++ F
Sbjct: 273 QTELKRKFEQMK-----------------QDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 256 HFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308
FG I + K+ M +G GFV F++ A +A+ M G ++ + + ++ ++++
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAER 80
+E ++I + D+ L F G +S+K++ ++ +G+ +G+GFV F H A++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 81 VLQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129
+ NG + G E+ L + + R +++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189
D L++ F S + ++ AKV+ + GRSKG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 190 RISAATPKK------TTGFQQQYAAVKAT 212
++ A K+ T + Q+ A+V+A
Sbjct: 364 YVALAQRKEERQAHLTNQYMQRMASVRAV 392
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PD T+ +L E F P + +V D T RS GY +V F + R
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN +P+RI + Q P+
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----------------------------QRDPSLRKSGVG 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
IF+ NLD ++ + L TF FG I++ K+ +G GFV F + +AE AI +M
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 35/288 (12%)
Query: 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84
+L++GDL E L F+ G ++SI++ R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144
N + G + R+ W+ G ++ G ++F+ +L + + L +TF S + ++
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTF-SAFGNI 125
Query: 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ 204
KVV D + S+GYGFV F + NRA+ MNG+ + R + + ++ +
Sbjct: 126 LSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE- 182
Query: 205 QYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264
Y V F T +++ N ++ ++ L++ F FG ++VK
Sbjct: 183 -------------YGAKVMEF--------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVK 221
Query: 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307
+ M RG GFV + A++A+ M G + + + + +K+
Sbjct: 222 VMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 142/302 (47%), Gaps = 43/302 (14%)
Query: 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82
V ++I +L D L F+ G ++S K++ ++ + GYGFV F + AA R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAI 155
Query: 83 QTYNGTPMPGTEQNFRLNWASFGIG------EKRPDAGPE----HSIFVGDLAPDVTDYL 132
QT NG LN +G E+ + G + ++++ + D+ D
Sbjct: 156 QTMNG---------MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206
Query: 133 LQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192
L+E F S + + KV+ D +TGRS+G+GFV + + E +A++EMNG + R + +
Sbjct: 207 LREIF-SAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264
Query: 193 AATPK--KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250
A + + ++++ +K N ++V NLD + ++ L
Sbjct: 265 RAQKRIERQGELKRKFEQIKQE--------------RINRYQGVNLYVKNLDDGIDDDRL 310
Query: 251 KQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306
++ F +G I + K+ +G GFV F++ A +A+ M G ++ + + ++ ++
Sbjct: 311 RKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 307 QD 308
++
Sbjct: 371 KE 372
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 21/207 (10%)
Query: 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERV 81
E ++I + D+ L F+ G +S+K++ + TG+ G+GFV + +H A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKA 247
Query: 82 LQTYNGTPMPG-----------TEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTD 130
+ NG + G E+ L I ++R + +++V +L + D
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190
L++ F S Y ++ AKV+T+ G SKG+GFV F E +A+TEMNG ST+P+
Sbjct: 308 DRLRKEF-SPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 191 ISAATPKK------TTGFQQQYAAVKA 211
++ A K+ T + Q+ A ++A
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRA 391
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174
P S++VGDL PDVT+ +L E F P + +V D T RS GY ++ F + R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234
A+ MN RP+RI + ++ G ++
Sbjct: 68 ALDTMNFEVIKGRPIRIMWS--QRDPGLRKSGVG-------------------------- 99
Query: 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQ 290
+F+ NLD ++ + L TF FG I++ K+ RG GFV F + +A AI M
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMN 159
Query: 291 GHMIGQQQV 299
G ++ ++V
Sbjct: 160 GMLLNDRKV 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,830,309
Number of Sequences: 539616
Number of extensions: 7349332
Number of successful extensions: 21376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 319
Number of HSP's that attempted gapping in prelim test: 17127
Number of HSP's gapped (non-prelim): 3007
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)