Query 014513
Match_columns 423
No_of_seqs 336 out of 2740
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.8E-47 2.1E-51 365.3 34.5 279 22-308 2-350 (352)
2 KOG0148 Apoptosis-promoting RN 100.0 2.9E-47 6.3E-52 328.0 24.6 238 20-309 3-240 (321)
3 KOG0117 Heterogeneous nuclear 100.0 2.6E-46 5.6E-51 342.8 30.8 265 9-313 69-337 (506)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-44 2.6E-49 358.6 36.1 257 11-309 46-309 (578)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.5E-42 5.4E-47 353.5 36.5 271 21-308 86-365 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-41 2.6E-46 348.5 31.0 251 25-307 2-261 (562)
7 KOG0145 RNA-binding protein EL 100.0 2.8E-41 6.1E-46 289.1 26.8 279 21-307 38-358 (360)
8 TIGR01622 SF-CC1 splicing fact 100.0 9.3E-40 2E-44 327.2 33.0 284 20-305 86-446 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2E-39 4.4E-44 324.1 33.5 274 22-308 1-352 (481)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7E-39 1.5E-43 320.2 34.3 277 21-307 94-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.4E-38 9.5E-43 319.4 32.6 278 17-305 169-500 (509)
12 TIGR01645 half-pint poly-U bin 100.0 8.2E-37 1.8E-41 303.1 32.2 178 19-197 103-284 (612)
13 KOG0144 RNA-binding protein CU 100.0 6.7E-38 1.4E-42 286.2 21.5 284 18-307 29-504 (510)
14 KOG0127 Nucleolar protein fibr 100.0 8.3E-36 1.8E-40 279.7 27.2 281 24-306 6-377 (678)
15 TIGR01659 sex-lethal sex-letha 100.0 8.7E-34 1.9E-38 268.5 27.5 168 111-309 102-277 (346)
16 TIGR01659 sex-lethal sex-letha 100.0 2.4E-32 5.1E-37 258.7 22.7 174 18-199 102-277 (346)
17 KOG0123 Polyadenylate-binding 100.0 2.5E-32 5.5E-37 259.7 22.5 238 25-306 3-245 (369)
18 KOG0123 Polyadenylate-binding 100.0 4.7E-31 1E-35 251.0 20.7 267 23-306 76-348 (369)
19 TIGR01645 half-pint poly-U bin 100.0 1.4E-30 3E-35 258.8 22.1 174 115-308 106-285 (612)
20 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-29 4.5E-34 244.1 23.5 177 22-199 88-351 (352)
21 KOG0144 RNA-binding protein CU 100.0 5.7E-30 1.2E-34 234.4 17.6 168 114-311 32-210 (510)
22 KOG0147 Transcriptional coacti 100.0 3E-30 6.4E-35 243.9 13.1 284 19-305 175-526 (549)
23 KOG0148 Apoptosis-promoting RN 100.0 6.2E-29 1.3E-33 214.8 17.5 176 13-197 52-238 (321)
24 TIGR01648 hnRNP-R-Q heterogene 100.0 8.4E-28 1.8E-32 238.8 25.7 228 21-259 136-367 (578)
25 TIGR01622 SF-CC1 splicing fact 100.0 6.8E-28 1.5E-32 241.5 22.3 172 114-305 87-264 (457)
26 KOG0124 Polypyrimidine tract-b 100.0 3E-28 6.6E-33 218.4 17.0 283 20-303 110-531 (544)
27 KOG4212 RNA-binding protein hn 100.0 5.9E-26 1.3E-30 208.2 26.0 171 20-193 41-290 (608)
28 KOG0110 RNA-binding protein (R 99.9 6.5E-27 1.4E-31 227.1 18.7 258 19-306 381-692 (725)
29 KOG0117 Heterogeneous nuclear 99.9 5.9E-26 1.3E-30 209.2 20.3 201 71-310 40-251 (506)
30 KOG0145 RNA-binding protein EL 99.9 1.9E-26 4.1E-31 198.1 13.7 162 115-307 40-209 (360)
31 KOG0131 Splicing factor 3b, su 99.9 2.7E-26 5.7E-31 187.6 12.0 169 113-311 6-181 (203)
32 KOG0131 Splicing factor 3b, su 99.9 2.7E-26 5.9E-31 187.5 11.9 173 22-201 8-181 (203)
33 KOG0127 Nucleolar protein fibr 99.9 1.1E-25 2.4E-30 211.8 17.1 185 117-309 6-198 (678)
34 KOG0109 RNA-binding protein LA 99.9 4.2E-25 9.1E-30 193.0 11.3 150 117-309 3-152 (346)
35 KOG4211 Splicing factor hnRNP- 99.9 7.9E-23 1.7E-27 191.3 26.5 277 19-305 6-356 (510)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.1E-23 6.8E-28 210.7 21.4 176 20-196 292-501 (509)
37 KOG4205 RNA-binding protein mu 99.9 8.2E-24 1.8E-28 194.3 15.2 172 115-313 5-182 (311)
38 KOG1190 Polypyrimidine tract-b 99.9 8.1E-22 1.8E-26 179.9 23.9 276 20-306 147-490 (492)
39 KOG4205 RNA-binding protein mu 99.9 4.5E-23 9.7E-28 189.5 14.9 177 21-201 4-180 (311)
40 KOG0124 Polypyrimidine tract-b 99.9 2.1E-23 4.5E-28 187.4 10.9 170 116-305 113-288 (544)
41 KOG0146 RNA-binding protein ET 99.9 1.9E-22 4.1E-27 174.2 12.6 196 114-311 17-369 (371)
42 KOG0109 RNA-binding protein LA 99.9 9E-23 1.9E-27 178.5 9.9 150 25-200 4-153 (346)
43 KOG1190 Polypyrimidine tract-b 99.9 1.8E-19 3.9E-24 164.7 23.2 284 16-311 21-377 (492)
44 KOG0120 Splicing factor U2AF, 99.8 1.7E-20 3.7E-25 180.6 16.3 277 15-305 167-490 (500)
45 KOG0110 RNA-binding protein (R 99.8 7.7E-21 1.7E-25 185.1 13.2 174 25-199 517-695 (725)
46 KOG0147 Transcriptional coacti 99.8 1.9E-21 4.1E-26 184.5 7.3 173 116-306 179-357 (549)
47 KOG0146 RNA-binding protein ET 99.8 1.6E-19 3.5E-24 156.2 13.9 176 22-199 18-367 (371)
48 KOG0105 Alternative splicing f 99.8 9.2E-19 2E-23 143.6 15.2 171 115-294 5-175 (241)
49 KOG4206 Spliceosomal protein s 99.8 8.6E-18 1.9E-22 143.6 17.6 186 115-305 8-220 (221)
50 KOG1456 Heterogeneous nuclear 99.8 1.5E-16 3.2E-21 144.0 25.4 283 12-306 20-362 (494)
51 KOG4211 Splicing factor hnRNP- 99.8 4.3E-17 9.4E-22 153.1 20.3 165 116-305 10-180 (510)
52 PLN03134 glycine-rich RNA-bind 99.8 1.9E-17 4.2E-22 137.7 16.1 80 229-308 30-115 (144)
53 KOG0105 Alternative splicing f 99.8 2.2E-17 4.8E-22 135.5 14.6 155 20-185 3-176 (241)
54 KOG4206 Spliceosomal protein s 99.7 1.2E-16 2.6E-21 136.6 17.0 165 21-194 7-219 (221)
55 KOG1456 Heterogeneous nuclear 99.7 6.9E-15 1.5E-19 133.4 27.3 273 24-307 123-491 (494)
56 KOG1365 RNA-binding protein Fu 99.7 5.4E-16 1.2E-20 140.9 19.5 280 20-305 57-360 (508)
57 PLN03134 glycine-rich RNA-bind 99.7 1.1E-16 2.3E-21 133.2 11.5 86 113-199 31-116 (144)
58 KOG0106 Alternative splicing f 99.7 7.8E-17 1.7E-21 139.3 8.4 166 118-304 3-168 (216)
59 KOG4212 RNA-binding protein hn 99.7 2.6E-15 5.6E-20 138.7 17.4 186 116-305 44-292 (608)
60 KOG1548 Transcription elongati 99.7 6.4E-15 1.4E-19 132.7 17.5 188 115-305 133-350 (382)
61 KOG1457 RNA binding protein (c 99.6 2.7E-15 5.8E-20 127.0 13.5 180 114-294 32-273 (284)
62 KOG0125 Ataxin 2-binding prote 99.6 3E-15 6.6E-20 133.7 9.8 79 229-307 92-174 (376)
63 KOG0149 Predicted RNA-binding 99.6 1.6E-15 3.4E-20 130.0 7.6 79 116-196 12-90 (247)
64 PF00076 RRM_1: RNA recognitio 99.6 5.5E-15 1.2E-19 107.7 8.9 65 236-300 1-70 (70)
65 KOG0107 Alternative splicing f 99.6 9.1E-15 2E-19 119.5 10.7 79 233-311 10-89 (195)
66 KOG1548 Transcription elongati 99.6 2.5E-13 5.3E-18 122.5 18.0 172 20-199 131-354 (382)
67 KOG0106 Alternative splicing f 99.6 6.4E-15 1.4E-19 127.5 7.1 151 24-193 2-167 (216)
68 KOG0121 Nuclear cap-binding pr 99.6 1.4E-14 3E-19 112.1 7.7 74 232-305 35-114 (153)
69 PF00076 RRM_1: RNA recognitio 99.6 2.5E-14 5.4E-19 104.1 8.9 70 119-190 1-70 (70)
70 PLN03120 nucleic acid binding 99.5 5.2E-14 1.1E-18 125.1 10.3 73 233-306 4-79 (260)
71 KOG0122 Translation initiation 99.5 8.5E-14 1.8E-18 119.8 11.2 85 18-104 184-268 (270)
72 COG0724 RNA-binding proteins ( 99.5 2.9E-13 6.2E-18 126.4 15.5 145 116-268 115-260 (306)
73 KOG0121 Nuclear cap-binding pr 99.5 3.4E-14 7.3E-19 110.0 7.3 82 115-197 35-116 (153)
74 KOG0149 Predicted RNA-binding 99.5 7E-14 1.5E-18 120.0 8.6 82 20-102 9-90 (247)
75 KOG1457 RNA binding protein (c 99.5 1.5E-12 3.2E-17 110.5 16.0 161 19-184 30-273 (284)
76 PF14259 RRM_6: RNA recognitio 99.5 1.9E-13 4.2E-18 99.5 9.3 65 236-300 1-70 (70)
77 COG0724 RNA-binding proteins ( 99.5 5E-13 1.1E-17 124.7 14.6 154 23-177 115-285 (306)
78 KOG4207 Predicted splicing fac 99.5 1.3E-13 2.8E-18 115.6 9.3 75 231-305 11-91 (256)
79 KOG0122 Translation initiation 99.5 1.6E-13 3.5E-18 118.1 10.1 82 115-197 188-269 (270)
80 PF14259 RRM_6: RNA recognitio 99.5 2.9E-13 6.4E-18 98.6 8.6 70 119-190 1-70 (70)
81 KOG0125 Ataxin 2-binding prote 99.5 3.8E-13 8.2E-18 120.5 10.6 100 18-121 91-190 (376)
82 KOG0107 Alternative splicing f 99.4 2.1E-13 4.6E-18 111.6 7.6 76 23-103 10-85 (195)
83 PLN03120 nucleic acid binding 99.4 8.4E-13 1.8E-17 117.5 10.3 77 116-197 4-80 (260)
84 PLN03213 repressor of silencin 99.4 6.9E-13 1.5E-17 124.6 10.2 75 231-305 8-86 (759)
85 PF13893 RRM_5: RNA recognitio 99.4 1.3E-12 2.8E-17 90.5 8.9 55 250-304 1-56 (56)
86 KOG0113 U1 small nuclear ribon 99.4 1.1E-12 2.4E-17 116.1 10.1 84 113-197 98-181 (335)
87 KOG0114 Predicted RNA-binding 99.4 1.4E-12 3E-17 97.2 8.7 74 232-305 17-93 (124)
88 smart00362 RRM_2 RNA recogniti 99.4 1.9E-12 4.1E-17 94.1 9.3 68 235-302 1-72 (72)
89 PLN03121 nucleic acid binding 99.4 2.1E-12 4.4E-17 113.1 10.4 73 232-305 4-79 (243)
90 KOG0113 U1 small nuclear ribon 99.4 1.8E-12 3.9E-17 114.8 9.9 85 18-102 96-180 (335)
91 KOG0108 mRNA cleavage and poly 99.4 1.1E-12 2.3E-17 126.4 9.0 84 117-201 19-102 (435)
92 KOG4207 Predicted splicing fac 99.4 9.4E-13 2E-17 110.5 6.8 84 17-100 7-90 (256)
93 KOG0126 Predicted RNA-binding 99.4 7.3E-14 1.6E-18 114.7 -0.4 85 114-199 33-117 (219)
94 PLN03213 repressor of silencin 99.4 2.7E-12 5.9E-17 120.6 9.8 80 114-198 8-89 (759)
95 KOG0120 Splicing factor U2AF, 99.4 7.8E-12 1.7E-16 121.1 13.0 180 16-196 282-491 (500)
96 KOG0111 Cyclophilin-type pepti 99.3 7.9E-13 1.7E-17 111.8 4.8 79 232-310 9-93 (298)
97 PLN03121 nucleic acid binding 99.3 6.4E-12 1.4E-16 110.0 10.5 77 115-196 4-80 (243)
98 KOG0114 Predicted RNA-binding 99.3 1E-11 2.2E-16 92.6 9.4 80 17-99 12-91 (124)
99 KOG4454 RNA binding protein (R 99.3 3.9E-13 8.5E-18 113.7 2.1 151 18-192 4-158 (267)
100 smart00360 RRM RNA recognition 99.3 7.5E-12 1.6E-16 90.6 8.3 70 28-97 1-70 (71)
101 smart00362 RRM_2 RNA recogniti 99.3 1.5E-11 3.3E-16 89.3 9.6 72 118-192 1-72 (72)
102 KOG0111 Cyclophilin-type pepti 99.3 1.3E-12 2.8E-17 110.6 4.2 86 114-200 8-93 (298)
103 KOG0130 RNA-binding protein RB 99.3 7.1E-12 1.5E-16 98.0 7.8 84 20-105 69-152 (170)
104 KOG1365 RNA-binding protein Fu 99.3 1.4E-11 3.1E-16 112.4 10.9 177 16-196 154-361 (508)
105 KOG0126 Predicted RNA-binding 99.3 2.2E-13 4.7E-18 112.0 -1.0 81 20-100 32-112 (219)
106 smart00360 RRM RNA recognition 99.3 1.7E-11 3.6E-16 88.7 8.9 71 121-192 1-71 (71)
107 cd00590 RRM RRM (RNA recogniti 99.3 2.7E-11 6E-16 88.4 9.7 69 235-303 1-74 (74)
108 KOG0128 RNA-binding protein SA 99.3 3.6E-13 7.7E-18 134.6 -0.8 236 22-306 570-814 (881)
109 KOG0153 Predicted RNA-binding 99.3 1.8E-11 3.9E-16 110.7 10.0 81 226-306 221-302 (377)
110 KOG0130 RNA-binding protein RB 99.3 1.5E-11 3.2E-16 96.3 7.5 82 228-309 67-154 (170)
111 KOG4660 Protein Mei2, essentia 99.3 6.9E-11 1.5E-15 113.5 13.0 161 18-193 70-246 (549)
112 KOG0129 Predicted RNA-binding 99.3 1.8E-10 3.8E-15 109.8 15.4 164 113-288 256-432 (520)
113 KOG0129 Predicted RNA-binding 99.3 2.2E-10 4.8E-15 109.2 16.0 155 18-177 254-431 (520)
114 KOG0226 RNA-binding proteins [ 99.2 8.8E-12 1.9E-16 108.0 5.8 170 24-197 97-270 (290)
115 smart00361 RRM_1 RNA recogniti 99.2 7.2E-11 1.6E-15 85.7 8.1 61 130-191 2-69 (70)
116 KOG4307 RNA binding protein RB 99.2 4.5E-10 9.9E-15 109.9 15.4 182 118-303 313-510 (944)
117 KOG0108 mRNA cleavage and poly 99.2 3.8E-11 8.2E-16 115.9 8.1 76 24-99 19-94 (435)
118 cd00590 RRM RRM (RNA recogniti 99.2 2.1E-10 4.5E-15 83.7 10.1 74 118-193 1-74 (74)
119 KOG4307 RNA binding protein RB 99.2 5.6E-10 1.2E-14 109.3 15.8 174 17-194 305-511 (944)
120 KOG0132 RNA polymerase II C-te 99.2 5.7E-11 1.2E-15 117.6 8.1 82 230-311 418-499 (894)
121 smart00361 RRM_1 RNA recogniti 99.1 3.4E-10 7.3E-15 82.2 7.1 61 37-97 2-69 (70)
122 KOG0112 Large RNA-binding prot 99.1 1.1E-10 2.5E-15 117.4 5.9 162 112-307 368-531 (975)
123 KOG4210 Nuclear localization s 99.1 2.7E-10 5.9E-15 105.1 7.9 176 114-310 86-267 (285)
124 PF13893 RRM_5: RNA recognitio 99.1 7.1E-10 1.5E-14 76.7 7.4 56 133-194 1-56 (56)
125 KOG4210 Nuclear localization s 99.0 2.8E-10 6E-15 105.1 6.1 177 21-200 86-267 (285)
126 KOG0128 RNA-binding protein SA 99.0 1.5E-11 3.2E-16 123.2 -2.7 151 20-196 664-814 (881)
127 KOG0226 RNA-binding proteins [ 99.0 3.9E-10 8.3E-15 98.0 5.1 164 117-306 97-269 (290)
128 KOG0415 Predicted peptidyl pro 99.0 1.2E-09 2.6E-14 99.0 7.4 83 226-308 232-320 (479)
129 KOG0415 Predicted peptidyl pro 99.0 1.3E-09 2.8E-14 98.9 6.9 84 112-196 235-318 (479)
130 KOG0132 RNA polymerase II C-te 98.9 2E-09 4.3E-14 106.9 7.8 106 23-137 421-527 (894)
131 KOG0116 RasGAP SH3 binding pro 98.9 9.5E-09 2.1E-13 98.8 11.6 73 233-306 288-366 (419)
132 KOG4208 Nucleolar RNA-binding 98.9 4.1E-09 8.8E-14 89.2 7.2 79 22-100 48-127 (214)
133 KOG4454 RNA binding protein (R 98.9 3.9E-10 8.4E-15 95.8 0.5 136 112-293 5-149 (267)
134 KOG4661 Hsp27-ERE-TATA-binding 98.9 8.3E-09 1.8E-13 99.0 9.4 76 231-306 403-484 (940)
135 KOG4660 Protein Mei2, essentia 98.9 4.1E-09 8.8E-14 101.5 7.3 179 112-306 71-249 (549)
136 KOG0112 Large RNA-binding prot 98.9 2E-09 4.4E-14 108.6 5.0 166 19-201 368-535 (975)
137 KOG4208 Nucleolar RNA-binding 98.8 1.4E-08 3E-13 86.0 8.4 90 108-197 41-130 (214)
138 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.7E-08 1E-12 94.0 8.5 82 114-196 403-484 (940)
139 KOG0153 Predicted RNA-binding 98.7 8.5E-08 1.8E-12 87.3 9.1 82 15-104 220-302 (377)
140 KOG0151 Predicted splicing reg 98.7 8.6E-08 1.9E-12 94.6 9.1 83 226-308 167-258 (877)
141 PF04059 RRM_2: RNA recognitio 98.5 8.4E-07 1.8E-11 67.6 8.5 75 234-308 2-88 (97)
142 KOG0533 RRM motif-containing p 98.5 5.4E-07 1.2E-11 80.4 8.5 80 20-100 80-159 (243)
143 PF04059 RRM_2: RNA recognitio 98.5 1.4E-06 3.1E-11 66.4 9.3 80 24-103 2-85 (97)
144 KOG0533 RRM motif-containing p 98.4 7.4E-07 1.6E-11 79.5 8.3 83 116-200 83-165 (243)
145 KOG4209 Splicing factor RNPS1, 98.4 3.8E-07 8.2E-12 81.6 5.7 84 112-197 97-180 (231)
146 PF08777 RRM_3: RNA binding mo 98.4 8E-07 1.7E-11 69.4 6.3 70 234-303 2-76 (105)
147 KOG2193 IGF-II mRNA-binding pr 98.4 4.8E-08 1E-12 90.8 -0.8 151 117-306 2-156 (584)
148 PF11608 Limkain-b1: Limkain b 98.4 1.8E-06 4E-11 62.5 7.4 69 234-306 3-76 (90)
149 KOG4209 Splicing factor RNPS1, 98.4 6.4E-07 1.4E-11 80.1 6.0 81 19-100 97-177 (231)
150 KOG0116 RasGAP SH3 binding pro 98.2 2.9E-06 6.4E-11 81.8 6.8 76 117-194 289-364 (419)
151 KOG0151 Predicted splicing reg 98.2 3E-06 6.4E-11 84.0 6.7 82 113-195 171-255 (877)
152 PF11608 Limkain-b1: Limkain b 98.0 2.7E-05 5.9E-10 56.5 7.2 67 24-100 3-74 (90)
153 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.6E-05 3.4E-10 53.7 5.6 52 234-286 2-53 (53)
154 KOG4676 Splicing factor, argin 98.0 9.3E-06 2E-10 75.2 4.8 175 117-294 8-213 (479)
155 KOG2193 IGF-II mRNA-binding pr 97.8 2.7E-06 5.8E-11 79.4 -1.2 153 24-196 2-156 (584)
156 KOG4849 mRNA cleavage factor I 97.8 3.8E-05 8.2E-10 70.2 5.3 76 21-96 78-155 (498)
157 KOG4676 Splicing factor, argin 97.7 9.4E-06 2E-10 75.2 1.2 154 25-185 9-214 (479)
158 COG5175 MOT2 Transcriptional r 97.7 0.0001 2.2E-09 67.1 6.8 73 233-305 114-201 (480)
159 KOG1995 Conserved Zn-finger pr 97.7 6.1E-05 1.3E-09 69.6 5.3 86 113-199 63-156 (351)
160 KOG3152 TBP-binding protein, a 97.7 3.6E-05 7.9E-10 67.6 3.4 72 23-94 74-157 (278)
161 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00031 6.8E-09 54.0 7.6 71 233-305 6-90 (100)
162 PF08777 RRM_3: RNA binding mo 97.5 0.00024 5.2E-09 55.5 5.8 58 24-87 2-59 (105)
163 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00044 9.5E-09 46.7 5.0 52 24-82 2-53 (53)
164 KOG1855 Predicted RNA-binding 97.4 0.00038 8.3E-09 65.6 6.2 63 229-291 227-308 (484)
165 KOG1996 mRNA splicing factor [ 97.4 0.00048 1E-08 61.7 6.4 59 247-305 300-365 (378)
166 KOG0115 RNA-binding protein p5 97.3 0.0026 5.6E-08 56.3 10.5 89 77-181 6-94 (275)
167 KOG1995 Conserved Zn-finger pr 97.3 0.00064 1.4E-08 63.0 7.0 82 19-102 62-151 (351)
168 PF08952 DUF1866: Domain of un 97.3 0.0019 4.1E-08 52.8 8.8 75 228-305 22-105 (146)
169 KOG3152 TBP-binding protein, a 97.2 0.0002 4.4E-09 63.1 2.2 66 232-297 73-156 (278)
170 KOG0115 RNA-binding protein p5 97.1 0.00094 2E-08 59.0 6.0 95 171-302 6-109 (275)
171 KOG2314 Translation initiation 97.1 0.0019 4E-08 63.2 8.4 72 232-303 57-140 (698)
172 COG5175 MOT2 Transcriptional r 97.1 0.0011 2.4E-08 60.5 6.5 82 116-198 114-204 (480)
173 KOG1855 Predicted RNA-binding 97.1 0.0005 1.1E-08 64.9 4.0 69 22-90 230-311 (484)
174 KOG2202 U2 snRNP splicing fact 97.1 0.00025 5.4E-09 62.7 1.8 58 248-305 83-146 (260)
175 KOG4849 mRNA cleavage factor I 97.0 0.00075 1.6E-08 61.9 3.9 78 116-194 80-159 (498)
176 KOG2314 Translation initiation 96.9 0.0014 3.1E-08 63.9 5.3 76 22-99 57-138 (698)
177 KOG2416 Acinus (induces apopto 96.7 0.0016 3.6E-08 63.9 3.9 79 228-306 439-521 (718)
178 KOG2202 U2 snRNP splicing fact 96.6 0.0012 2.5E-08 58.5 2.2 64 131-195 83-146 (260)
179 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.015 3.3E-07 44.8 7.2 76 116-194 6-89 (100)
180 PF08952 DUF1866: Domain of un 96.4 0.0079 1.7E-07 49.2 5.6 55 39-102 52-106 (146)
181 PF04847 Calcipressin: Calcipr 96.3 0.015 3.3E-07 50.2 7.0 62 246-307 8-71 (184)
182 PF08675 RNA_bind: RNA binding 96.1 0.035 7.6E-07 40.6 7.1 59 20-87 6-64 (87)
183 PF15023 DUF4523: Protein of u 95.9 0.041 8.9E-07 44.4 7.3 75 229-305 82-160 (166)
184 KOG2591 c-Mpl binding protein, 95.7 0.031 6.7E-07 54.8 7.2 74 18-98 170-252 (684)
185 PF10309 DUF2414: Protein of u 95.7 0.067 1.5E-06 37.1 6.9 52 25-85 7-62 (62)
186 PF07576 BRAP2: BRCA1-associat 95.7 0.11 2.4E-06 40.8 9.0 70 21-92 11-81 (110)
187 KOG1996 mRNA splicing factor [ 95.7 0.03 6.5E-07 50.6 6.4 60 37-96 300-360 (378)
188 KOG2591 c-Mpl binding protein, 95.6 0.036 7.8E-07 54.4 7.1 69 233-302 175-247 (684)
189 KOG2135 Proteins containing th 95.4 0.0086 1.9E-07 57.5 2.3 75 232-307 371-446 (526)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.026 5.6E-07 48.6 3.6 85 20-104 4-97 (176)
191 PF10309 DUF2414: Protein of u 94.8 0.22 4.9E-06 34.5 7.2 55 233-289 5-62 (62)
192 KOG2068 MOT2 transcription fac 94.7 0.011 2.3E-07 54.8 0.5 74 233-306 77-162 (327)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.12 2.7E-06 44.4 6.9 77 232-308 6-99 (176)
194 PF08675 RNA_bind: RNA binding 94.4 0.33 7.1E-06 35.6 7.5 55 233-290 9-63 (87)
195 PF07576 BRAP2: BRCA1-associat 94.1 0.62 1.3E-05 36.6 9.3 66 117-185 13-80 (110)
196 KOG4285 Mitotic phosphoprotein 94.0 0.12 2.6E-06 47.1 5.6 73 233-307 197-270 (350)
197 KOG0804 Cytoplasmic Zn-finger 94.0 0.38 8.2E-06 46.4 9.2 69 22-92 73-142 (493)
198 KOG2416 Acinus (induces apopto 93.9 0.052 1.1E-06 53.8 3.5 69 18-92 439-508 (718)
199 KOG2318 Uncharacterized conser 93.7 0.27 6E-06 48.8 8.0 83 19-101 170-304 (650)
200 KOG4574 RNA-binding protein (c 93.1 0.054 1.2E-06 55.8 2.2 74 236-309 301-376 (1007)
201 PF07292 NID: Nmi/IFP 35 domai 92.8 0.17 3.8E-06 37.8 4.0 70 162-255 1-74 (88)
202 PF15023 DUF4523: Protein of u 92.7 0.33 7.1E-06 39.4 5.6 65 20-92 83-151 (166)
203 KOG0804 Cytoplasmic Zn-finger 91.9 0.91 2E-05 43.9 8.5 70 115-186 73-142 (493)
204 KOG2253 U1 snRNP complex, subu 91.5 0.17 3.6E-06 51.1 3.3 83 218-304 26-108 (668)
205 KOG2068 MOT2 transcription fac 91.4 0.12 2.5E-06 48.1 2.0 83 116-199 77-165 (327)
206 PF10567 Nab6_mRNP_bdg: RNA-re 91.3 3.6 7.7E-05 37.8 11.1 159 22-180 14-212 (309)
207 KOG2135 Proteins containing th 90.6 0.25 5.4E-06 47.9 3.4 87 11-106 360-447 (526)
208 PF07292 NID: Nmi/IFP 35 domai 90.4 0.23 5.1E-06 37.1 2.4 70 68-137 1-73 (88)
209 PF03880 DbpA: DbpA RNA bindin 90.1 0.4 8.7E-06 34.7 3.5 59 243-304 11-74 (74)
210 PF11767 SET_assoc: Histone ly 90.1 1.1 2.3E-05 31.6 5.4 52 34-94 11-62 (66)
211 KOG4574 RNA-binding protein (c 89.9 0.26 5.6E-06 51.1 3.1 73 27-105 302-374 (1007)
212 PF04847 Calcipressin: Calcipr 88.1 0.94 2E-05 39.2 4.9 57 36-98 8-66 (184)
213 KOG4019 Calcineurin-mediated s 88.0 0.54 1.2E-05 39.8 3.2 77 233-309 10-92 (193)
214 KOG2253 U1 snRNP complex, subu 86.3 0.92 2E-05 46.0 4.3 72 19-99 36-107 (668)
215 KOG2318 Uncharacterized conser 84.8 4.8 0.0001 40.4 8.3 74 230-303 171-304 (650)
216 PF11767 SET_assoc: Histone ly 82.5 8.7 0.00019 27.1 6.7 55 244-301 11-65 (66)
217 PF03880 DbpA: DbpA RNA bindin 82.0 5.6 0.00012 28.7 5.9 60 126-194 11-74 (74)
218 KOG4285 Mitotic phosphoprotein 80.7 3.8 8.3E-05 37.6 5.5 70 119-197 200-270 (350)
219 PF10567 Nab6_mRNP_bdg: RNA-re 77.5 3.9 8.5E-05 37.5 4.6 74 232-305 14-106 (309)
220 KOG4410 5-formyltetrahydrofola 77.4 10 0.00022 34.6 7.0 57 24-86 331-395 (396)
221 KOG0921 Dosage compensation co 72.2 6.4 0.00014 42.0 5.1 11 327-337 1193-1203(1282)
222 PF14111 DUF4283: Domain of un 70.0 5.8 0.00013 32.9 3.7 111 127-267 28-139 (153)
223 KOG4483 Uncharacterized conser 68.3 10 0.00022 36.3 5.1 57 20-83 388-445 (528)
224 PRK14548 50S ribosomal protein 64.7 22 0.00048 26.4 5.3 57 25-84 22-80 (84)
225 PF14111 DUF4283: Domain of un 64.5 14 0.0003 30.7 4.9 118 24-152 16-140 (153)
226 PF15513 DUF4651: Domain of un 63.4 15 0.00033 25.3 3.9 19 248-266 9-27 (62)
227 KOG2891 Surface glycoprotein [ 61.5 4.8 0.0001 36.4 1.6 23 245-267 173-195 (445)
228 TIGR03636 L23_arch archaeal ri 57.4 38 0.00083 24.7 5.4 57 25-84 15-73 (77)
229 TIGR02542 B_forsyth_147 Bacter 56.5 27 0.00058 27.3 4.7 120 29-170 9-130 (145)
230 PF00403 HMA: Heavy-metal-asso 54.3 65 0.0014 21.7 6.7 54 235-288 1-58 (62)
231 KOG0037 Ca2+-binding protein, 53.4 8.9 0.00019 33.7 1.9 11 406-417 82-92 (221)
232 KOG0921 Dosage compensation co 52.0 26 0.00056 37.7 5.1 8 159-166 902-909 (1282)
233 KOG4410 5-formyltetrahydrofola 50.3 23 0.0005 32.4 4.0 48 233-280 330-378 (396)
234 PF03468 XS: XS domain; Inter 48.8 20 0.00044 28.5 3.1 47 26-75 11-66 (116)
235 COG5638 Uncharacterized conser 46.9 70 0.0015 31.0 6.7 82 18-99 141-292 (622)
236 KOG0199 ACK and related non-re 45.7 43 0.00093 35.3 5.5 14 384-397 988-1001(1039)
237 KOG4213 RNA-binding protein La 45.3 29 0.00063 29.6 3.6 56 23-84 111-169 (205)
238 COG5638 Uncharacterized conser 43.9 1.1E+02 0.0025 29.6 7.6 78 228-305 141-296 (622)
239 KOG4019 Calcineurin-mediated s 43.4 20 0.00043 30.6 2.4 72 25-103 12-88 (193)
240 PF08544 GHMP_kinases_C: GHMP 39.9 1.2E+02 0.0027 21.7 6.2 42 248-290 37-80 (85)
241 PF03439 Spt5-NGN: Early trans 38.2 59 0.0013 24.0 4.0 35 259-293 33-68 (84)
242 KOG2891 Surface glycoprotein [ 36.0 28 0.0006 31.7 2.3 68 23-90 149-247 (445)
243 PF07530 PRE_C2HC: Associated 33.6 96 0.0021 21.9 4.3 64 131-197 2-65 (68)
244 PRK13859 type IV secretion sys 33.4 16 0.00035 23.9 0.3 10 413-422 36-45 (55)
245 KOG1295 Nonsense-mediated deca 32.6 48 0.001 31.9 3.3 72 21-92 5-79 (376)
246 COG5193 LHP1 La protein, small 32.4 22 0.00047 34.3 1.0 63 21-83 172-244 (438)
247 PF02714 DUF221: Domain of unk 31.6 49 0.0011 31.4 3.4 32 272-305 1-32 (325)
248 PRK11634 ATP-dependent RNA hel 31.0 3.1E+02 0.0067 29.0 9.4 60 243-305 497-561 (629)
249 KOG4483 Uncharacterized conser 30.7 82 0.0018 30.5 4.5 56 232-288 390-446 (528)
250 PF02714 DUF221: Domain of unk 30.3 82 0.0018 29.8 4.7 19 162-180 1-19 (325)
251 KOG4008 rRNA processing protei 30.3 39 0.00084 30.2 2.2 35 19-53 36-70 (261)
252 PRK01178 rps24e 30S ribosomal 30.2 1.5E+02 0.0032 22.8 5.1 47 127-174 30-80 (99)
253 cd00874 RNA_Cyclase_Class_II R 29.8 5E+02 0.011 24.8 10.3 115 30-168 119-239 (326)
254 KOG4365 Uncharacterized conser 29.6 9.5 0.00021 37.0 -1.8 79 24-103 4-82 (572)
255 KOG2295 C2H2 Zn-finger protein 29.2 9 0.0002 38.3 -2.0 72 21-92 229-300 (648)
256 KOG2295 C2H2 Zn-finger protein 28.8 9 0.00019 38.3 -2.1 70 116-186 231-300 (648)
257 smart00596 PRE_C2HC PRE_C2HC d 28.3 1.1E+02 0.0025 21.6 3.8 64 131-197 2-65 (69)
258 PF14893 PNMA: PNMA 28.1 45 0.00097 31.8 2.4 29 18-46 13-41 (331)
259 COG2608 CopZ Copper chaperone 27.8 2.2E+02 0.0048 20.1 5.6 46 234-279 4-49 (71)
260 PF03439 Spt5-NGN: Early trans 27.4 1E+02 0.0022 22.7 3.8 24 64-87 43-66 (84)
261 PF11411 DNA_ligase_IV: DNA li 24.5 52 0.0011 20.0 1.4 16 243-258 19-34 (36)
262 PRK11901 hypothetical protein; 24.4 3.1E+02 0.0066 26.1 7.0 64 19-87 241-306 (327)
263 PTZ00191 60S ribosomal protein 23.8 2.2E+02 0.0048 23.5 5.3 56 25-83 83-140 (145)
264 KOG1295 Nonsense-mediated deca 23.1 1.1E+02 0.0024 29.4 4.0 66 233-298 7-82 (376)
265 PF14893 PNMA: PNMA 22.1 1E+02 0.0022 29.4 3.6 59 114-172 16-75 (331)
266 PRK14548 50S ribosomal protein 21.2 3.3E+02 0.0072 20.2 5.4 54 236-289 23-81 (84)
267 PTZ00071 40S ribosomal protein 20.3 2.5E+02 0.0055 22.8 4.9 47 126-173 34-85 (132)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9.8e-47 Score=365.26 Aligned_cols=279 Identities=28% Similarity=0.459 Sum_probs=225.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
+..+|||+|||+.++|++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|||..+.++.+.+ .|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v--~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV--SY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE--Ee
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999965544 44
Q ss_pred cccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCC
Q 014513 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (423)
Q Consensus 102 a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g 181 (423)
+... ......++|||+|||.++++++|+++| +.||.|..++++.+..++.++|||||+|.+.++|++|++.|||
T Consensus 80 a~~~-----~~~~~~~~l~v~~l~~~~~~~~l~~~f-~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPS-----SDSIKGANLYVSGLPKTMTQHELESIF-SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eccc-----ccccccceEEECCccccCCHHHHHHHH-hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 4321 122345689999999999999999999 8999999999999988899999999999999999999999999
Q ss_pred ceecC--cceEEecccCCCcccchhhhh-------hhcccC------------CC-------------------------
Q 014513 182 VFCST--RPMRISAATPKKTTGFQQQYA-------AVKATY------------PV------------------------- 215 (423)
Q Consensus 182 ~~~~g--~~i~v~~a~~~~~~~~~~~~~-------~~~~~~------------~~------------------------- 215 (423)
..+.+ ++|.+.++............. ...... +.
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 99876 578888876544211100000 000000 00
Q ss_pred --------CCCCCC----------CccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcE
Q 014513 216 --------AAYTTP----------VQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGC 271 (423)
Q Consensus 216 --------~~~~~~----------~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~ 271 (423)
.....+ .............+|||+|||.++++++|+++|++||.|++++|..+ |||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 000000 00000111223457999999999999999999999999999999864 799
Q ss_pred EEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 272 GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 272 aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
|||+|.+.++|.+|+..|||..|+||.|+|+|+..+.
T Consensus 314 aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 314 GFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999999999999999998664
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-47 Score=327.96 Aligned_cols=238 Identities=34% Similarity=0.623 Sum_probs=208.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
.++-|||||+||...++|+-|..+|++.|+|.+||||.+ .+++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 567899999999999999999999999999999999886 4456
Q ss_pred eccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh
Q 014513 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (423)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~ 179 (423)
.|+......++++......+||++|.++++-++|++.| .+||+|.+++|++|..|+++|||+||.|-+.++|++||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 67765555666677778889999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCC
Q 014513 180 NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259 (423)
Q Consensus 180 ~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~ 259 (423)
||+.|.+|.|+-.||+.+........ ......-....+.+|+|||||++..+||++|++.|++||.
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~--------------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~ 190 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKP--------------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP 190 (321)
T ss_pred CCeeeccceeeccccccCccccCCCC--------------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc
Confidence 99999999999999998873211100 0001111234456899999999999999999999999999
Q ss_pred eEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 260 I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
|.+|+|.+++||+||+|.+.|+|.+||.++|+++|+|+.|+++|.+....
T Consensus 191 I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 191 IQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred ceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999995443
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-46 Score=342.81 Aligned_cols=265 Identities=20% Similarity=0.333 Sum_probs=229.8
Q ss_pred CCCCCCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC
Q 014513 9 GGYHQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT 88 (423)
Q Consensus 9 ~g~~~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~ 88 (423)
+|+...++...+...+.|||+.||.++.|++|..+|++.|+|.+++++.++.+|.++|||||.|++.++|++|++.||+.
T Consensus 69 ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~ 148 (506)
T KOG0117|consen 69 GGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY 148 (506)
T ss_pred CCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc
Confidence 44444466666678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC-CCCCcceEEEEe
Q 014513 89 PMP-GTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN-TGRSKGYGFVKF 166 (423)
Q Consensus 89 ~~~-~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~-tg~~~G~afV~f 166 (423)
+|. |+.+.|.++.+ .++|||||||...++++|.+.|.....-|.+|.+...+. ..++||||||+|
T Consensus 149 Eir~GK~igvc~Sva-------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 149 EIRPGKLLGVCVSVA-------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEY 215 (506)
T ss_pred cccCCCEeEEEEeee-------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEe
Confidence 885 55555655544 688999999999999999999944444599998887754 568999999999
Q ss_pred CCHHHHHHHHHhhCCc--eecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCC
Q 014513 167 LDENERNRAMTEMNGV--FCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN 244 (423)
Q Consensus 167 ~~~~~a~~a~~~~~g~--~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~ 244 (423)
.+...|..|-++|-.. .+.|..+.|.||.+....... .....+.|||+||+.+
T Consensus 216 e~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded-------------------------~ms~VKvLYVRNL~~~ 270 (506)
T KOG0117|consen 216 ESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED-------------------------TMSKVKVLYVRNLMES 270 (506)
T ss_pred ecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh-------------------------hhhheeeeeeeccchh
Confidence 9999999999876543 458999999999998775432 2234588999999999
Q ss_pred CCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCCCCC
Q 014513 245 VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSV 313 (423)
Q Consensus 245 ~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~~~~ 313 (423)
+|+|.|++.|++||.|+.|+.++ .||||.|.++++|.+|++.+||++|+|..|.|.+|+++.....+
T Consensus 271 tTeE~lk~~F~~~G~veRVkk~r--DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 271 TTEETLKKLFNEFGKVERVKKPR--DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred hhHHHHHHHHHhccceEEeeccc--ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 99999999999999999999985 49999999999999999999999999999999999977655444
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.2e-44 Score=358.58 Aligned_cols=257 Identities=19% Similarity=0.334 Sum_probs=215.1
Q ss_pred CCCCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 014513 11 YHQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (423)
Q Consensus 11 ~~~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~ 90 (423)
+...++...+...++|||+|||++++|++|+++|++||.|.+|+|+++ .+|.++|||||+|.+.++|++||+.||+..+
T Consensus 46 Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i 124 (578)
T TIGR01648 46 PPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI 124 (578)
T ss_pred CCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCee
Confidence 333444455667799999999999999999999999999999999999 5999999999999999999999999999988
Q ss_pred C-CccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCC-eeEEEEee-CCCCCCCcceEEEEeC
Q 014513 91 P-GTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVVT-DPNTGRSKGYGFVKFL 167 (423)
Q Consensus 91 ~-~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~-v~~v~i~~-~~~tg~~~G~afV~f~ 167 (423)
. ++.+. +.++ ...++|||+|||+++++++|.+.| +.++. +.++.+.. ...+++++|||||+|.
T Consensus 125 ~~Gr~l~--V~~S-----------~~~~rLFVgNLP~~~TeeeL~eeF-skv~egvv~vIv~~~~~~kgKnRGFAFVeF~ 190 (578)
T TIGR01648 125 RPGRLLG--VCIS-----------VDNCRLFVGGIPKNKKREEILEEF-SKVTEGVVDVIVYHSAADKKKNRGFAFVEYE 190 (578)
T ss_pred cCCcccc--cccc-----------ccCceeEeecCCcchhhHHHHHHh-hcccCCceEEEEeccccccCccCceEEEEcC
Confidence 5 43322 2222 235789999999999999999999 67753 55554432 3345789999999999
Q ss_pred CHHHHHHHHHhhCC--ceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCC
Q 014513 168 DENERNRAMTEMNG--VFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNV 245 (423)
Q Consensus 168 ~~~~a~~a~~~~~g--~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~ 245 (423)
+.++|..|+++++. ..+.++.|.|.++.+..... .+.....++|||+||+.++
T Consensus 191 s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d-------------------------~~~~~~~k~LfVgNL~~~~ 245 (578)
T TIGR01648 191 SHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD-------------------------EDVMAKVKILYVRNLMTTT 245 (578)
T ss_pred CHHHHHHHHHHhhccceEecCceEEEEeeccccccc-------------------------ccccccccEEEEeCCCCCC
Confidence 99999999988764 45789999999987754321 1112235789999999999
Q ss_pred CHHHHHHHhhhc--CCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 246 TEEELKQTFLHF--GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 246 te~~L~~~F~~~--G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
|+++|+++|++| |.|++|.+. ++||||+|.+.++|++|++.|||+.|+|+.|+|+||++...
T Consensus 246 tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 246 TEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999 999999887 67999999999999999999999999999999999987544
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.5e-42 Score=353.54 Aligned_cols=271 Identities=25% Similarity=0.450 Sum_probs=225.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
....+|||+|||+++++++|+++|+.||.|.+|+|..+. +|+++|||||+|.+.++|.+|++.|||..+.++.+.+...
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 345679999999999999999999999999999999986 8889999999999999999999999999999876655432
Q ss_pred ccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 101 WASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
....... .......++|||+|||.++|+++|+++| +.||.|.+++++++. +++++|||||+|.+.++|.+|++.++
T Consensus 165 ~~~~~~~--~~~~~~~~~l~V~nl~~~~tee~L~~~F-~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 165 IKKHERE--AAPLKKFTNLYVKNLDPSVNEDKLRELF-AKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred ccccccc--cccccCCCeEEEeCCCCcCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC
Confidence 2211111 1233345789999999999999999999 899999999999985 68999999999999999999999999
Q ss_pred Cceec----CcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhh
Q 014513 181 GVFCS----TRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256 (423)
Q Consensus 181 g~~~~----g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~ 256 (423)
|..+. ++.+.|.++..+............. . ..........++|||+||+..+|+++|+++|++
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~-~-----------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~ 308 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEE-L-----------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSE 308 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHHhhHHh-h-----------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHh
Confidence 99999 9999998886654432110000000 0 000111234678999999999999999999999
Q ss_pred cCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 257 FGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 257 ~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
||.|+++++..+ +|||||+|.+.++|.+|+..|||+.|+|++|.|.+|.++.
T Consensus 309 ~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 309 CGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred cCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 999999999763 6999999999999999999999999999999999998643
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-41 Score=348.53 Aligned_cols=251 Identities=32% Similarity=0.548 Sum_probs=221.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecccc
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASF 104 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~ 104 (423)
+|||+|||++++|++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|++.||+..+.++ .+++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk--~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK--PIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--eEEeecccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999885 566677643
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee
Q 014513 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (423)
Q Consensus 105 ~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~ 184 (423)
....+ .....+|||+|||.++++++|+++| +.||.|.+|+|+++. +|+++|||||+|.+.++|.+|++++||..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F-~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTF-SKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHH-HhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 32222 2234579999999999999999999 899999999999985 689999999999999999999999999999
Q ss_pred cCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEE
Q 014513 185 STRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264 (423)
Q Consensus 185 ~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~ 264 (423)
.++.|.|.....+.... .......++|||+||+.++|+++|+++|++||.|.++.
T Consensus 155 ~~~~i~v~~~~~~~~~~-------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~ 209 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE-------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAA 209 (562)
T ss_pred cCceEEEeccccccccc-------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEE
Confidence 99999997665543321 01123357899999999999999999999999999999
Q ss_pred EeC-----CCcEEEEEeCChHHHHHHHHHhCCeEeC----ceEEEEEEcccC
Q 014513 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIG----QQQVRISWGRKQ 307 (423)
Q Consensus 265 i~~-----~~g~aFV~F~~~~~A~~Al~~l~g~~i~----g~~l~v~~a~~~ 307 (423)
+.. ++|||||+|.+.++|.+|++.|||..|. |+.|.|.++..+
T Consensus 210 i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 210 VMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred EEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 976 3789999999999999999999999999 999999988744
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-41 Score=289.15 Aligned_cols=279 Identities=28% Similarity=0.435 Sum_probs=229.9
Q ss_pred CCc-cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 21 EEV-RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 21 ~~~-r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
+++ ..|.|.-||..+++++|+.+|+..|+|++||+++|+.+|.+-||+||.|.++++|++|+..|||..+.. .+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~--KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN--KTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc--ceEEE
Confidence 444 459999999999999999999999999999999999999999999999999999999999999999988 56666
Q ss_pred eccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh
Q 014513 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (423)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~ 179 (423)
+++.++.. .-....|||.+||..+|..+|..+| ++||.|..-+|+.|..||.+||.+||.|...++|+.|++.+
T Consensus 116 SyARPSs~-----~Ik~aNLYvSGlPktMtqkelE~iF-s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 116 SYARPSSD-----SIKDANLYVSGLPKTMTQKELEQIF-SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred EeccCChh-----hhcccceEEecCCccchHHHHHHHH-HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 66654332 2235569999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCceecC--cceEEecccCCCcccchhhh----hhhcccCCCC------------------C--CCCC---------Ccc
Q 014513 180 NGVFCST--RPMRISAATPKKTTGFQQQY----AAVKATYPVA------------------A--YTTP---------VQV 224 (423)
Q Consensus 180 ~g~~~~g--~~i~v~~a~~~~~~~~~~~~----~~~~~~~~~~------------------~--~~~~---------~~~ 224 (423)
||+.-.| .+|.|+++............ ..+...++.+ . .-.| ...
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~ 269 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGV 269 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeee
Confidence 9998754 58999998765443322111 0100000000 0 0000 111
Q ss_pred CCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceE
Q 014513 225 FPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (423)
Q Consensus 225 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~ 298 (423)
..+.......+|||-||.++.+|.-|.++|.+||.|.+|+|.+| ||||||+..+-++|..||..|||..+++|.
T Consensus 270 ~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 270 NLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 12334445789999999999999999999999999999999885 799999999999999999999999999999
Q ss_pred EEEEEcccC
Q 014513 299 VRISWGRKQ 307 (423)
Q Consensus 299 l~v~~a~~~ 307 (423)
|.|+|...+
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999997644
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=9.3e-40 Score=327.16 Aligned_cols=284 Identities=21% Similarity=0.352 Sum_probs=224.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
.++.++|||+|||..+++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|| .|+|..+.++.+.+..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 456889999999999999999999999999999999999999999999999999999999999 5899999998777765
Q ss_pred eccccCCCC-----CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHH
Q 014513 100 NWASFGIGE-----KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 100 ~~a~~~~~~-----~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~ 174 (423)
..+...... ........++|||+|||..+++++|+++| +.||.|..|.++.++.+|+++|||||+|.+.++|.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 443221111 11112236889999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhCCceecCcceEEecccCCCcccchhh-----------------------hhhh-------cccCCCCCC------
Q 014513 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQ-----------------------YAAV-------KATYPVAAY------ 218 (423)
Q Consensus 175 a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~-----------------------~~~~-------~~~~~~~~~------ 218 (423)
|+..|||..+.|++|.|.++........... .... ....+....
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQ 323 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhc
Confidence 9999999999999999999753221100000 0000 000000000
Q ss_pred ------------------------CCCCccCCCCCCCCcceEEEecCCCCCC----------HHHHHHHhhhcCCeEEEE
Q 014513 219 ------------------------TTPVQVFPADNDITNTTIFVGNLDPNVT----------EEELKQTFLHFGEIVNVK 264 (423)
Q Consensus 219 ------------------------~~~~~~~~~~~~~~~~~l~V~nL~~~~t----------e~~L~~~F~~~G~I~~v~ 264 (423)
..+.............+|+|.||....+ .+||++.|++||.|+.|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~ 403 (457)
T TIGR01622 324 KLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIY 403 (457)
T ss_pred cccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEE
Confidence 0000000011335678999999965544 368999999999999999
Q ss_pred EeC--CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 265 IPM--GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 265 i~~--~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
|.. ..|++||+|.++++|.+|++.|||..++|+.|.+.+..
T Consensus 404 v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 404 VDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 973 57999999999999999999999999999999999876
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2e-39 Score=324.06 Aligned_cols=274 Identities=17% Similarity=0.212 Sum_probs=209.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHc--CCCCCCCccceEee
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY--NGTPMPGTEQNFRL 99 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l--~g~~~~~~~~~v~~ 99 (423)
++|+|||+|||++++|++|+++|++||.|.+|+++++ ++||||+|.+.++|++|++.+ ++..+.|+. +.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~--l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQP--AFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeE--EEE
Confidence 4799999999999999999999999999999999864 489999999999999999875 677788854 555
Q ss_pred eccccCCCCCCC-------CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHH
Q 014513 100 NWASFGIGEKRP-------DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172 (423)
Q Consensus 100 ~~a~~~~~~~~~-------~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a 172 (423)
.|+......+.. ......+|||+||++.+|+++|+++| +.||.|..|.|+++.. +|+|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F-~~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIF-NPYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHH-hccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 555322211111 11123479999999999999999999 8999999999987643 47999999999999
Q ss_pred HHHHHhhCCceecC--cceEEecccCCCcccch---------h-------h----------hhhhcc----cCCCCCCC-
Q 014513 173 NRAMTEMNGVFCST--RPMRISAATPKKTTGFQ---------Q-------Q----------YAAVKA----TYPVAAYT- 219 (423)
Q Consensus 173 ~~a~~~~~g~~~~g--~~i~v~~a~~~~~~~~~---------~-------~----------~~~~~~----~~~~~~~~- 219 (423)
.+|++.|||..+.+ +.|+|.++.+....... . . ...... ..+..+++
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999999965 47888777653211000 0 0 000000 00000000
Q ss_pred -------------------CC---------------CccCCCCCCCCcceEEEecCCC-CCCHHHHHHHhhhcCCeEEEE
Q 014513 220 -------------------TP---------------VQVFPADNDITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVK 264 (423)
Q Consensus 220 -------------------~~---------------~~~~~~~~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~I~~v~ 264 (423)
.+ ..........++++|||+||+. .+|+++|+++|+.||.|.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 00 0000111234678999999997 699999999999999999999
Q ss_pred EeCC-CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 265 IPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 265 i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
|+++ +|||||+|.+.++|.+|+..|||..|.|+.|+|++++.+.
T Consensus 308 i~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 308 FMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9876 6999999999999999999999999999999999987553
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7e-39 Score=320.22 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=215.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
....+|||.||++++++++|+++|+.||.|.+|+|++++ ..++|||+|.+.++|.+|++.|||..|.+..+++++.
T Consensus 94 ~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~ 169 (481)
T TIGR01649 94 NKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIE 169 (481)
T ss_pred CceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEE
Confidence 345689999999999999999999999999999998865 2468999999999999999999999998876667766
Q ss_pred ccccCCC-------------------CC-----------C----------------------------------------
Q 014513 101 WASFGIG-------------------EK-----------R---------------------------------------- 110 (423)
Q Consensus 101 ~a~~~~~-------------------~~-----------~---------------------------------------- 110 (423)
|+..... .+ .
T Consensus 170 ~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
T TIGR01649 170 YAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPS 249 (481)
T ss_pred EecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCC
Confidence 6542110 00 0
Q ss_pred --------------------CCCCCCceEEEeCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCH
Q 014513 111 --------------------PDAGPEHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169 (423)
Q Consensus 111 --------------------~~~~~~~~l~vgnLp~-~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~ 169 (423)
....++++|||+||++ .+++++|+++| +.||.|..|+|++++ +|||||+|.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF-~~yG~V~~vki~~~~-----~g~afV~f~~~ 323 (481)
T TIGR01649 250 RYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLF-CVYGNVERVKFMKNK-----KETALIEMADP 323 (481)
T ss_pred CCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCC-----CCEEEEEECCH
Confidence 0012457899999998 69999999999 899999999999873 68999999999
Q ss_pred HHHHHHHHhhCCceecCcceEEecccCCCcccchhhh-hh-hc--ccCCC---CCCCCCCccCCCCCCCCcceEEEecCC
Q 014513 170 NERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQY-AA-VK--ATYPV---AAYTTPVQVFPADNDITNTTIFVGNLD 242 (423)
Q Consensus 170 ~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~-~~-~~--~~~~~---~~~~~~~~~~~~~~~~~~~~l~V~nL~ 242 (423)
++|.+|+..|||..+.|++|+|.++............ .. .. ..+.. .....+.........+++.+|||+|||
T Consensus 324 ~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp 403 (481)
T TIGR01649 324 YQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIP 403 (481)
T ss_pred HHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCC
Confidence 9999999999999999999999987554321111000 00 00 00000 000001100011123467899999999
Q ss_pred CCCCHHHHHHHhhhcCC--eEEEEEeCC----CcEEEEEeCChHHHHHHHHHhCCeEeCceE------EEEEEcccC
Q 014513 243 PNVTEEELKQTFLHFGE--IVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQ------VRISWGRKQ 307 (423)
Q Consensus 243 ~~~te~~L~~~F~~~G~--I~~v~i~~~----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~------l~v~~a~~~ 307 (423)
.++|+++|+++|+.||. |+.+++... +++|||+|.+.++|.+||..|||+.|+++. |+|+|++++
T Consensus 404 ~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 404 LSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999999999998 888888654 599999999999999999999999999885 999999854
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.4e-38 Score=319.39 Aligned_cols=278 Identities=19% Similarity=0.304 Sum_probs=210.6
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHH
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHT------------GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~------------G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~ 84 (423)
+...+..|+|||+|||+.+++++|+.+|+++ ++|.++.+ +..+|||||+|.+.++|..|| .
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-c
Confidence 3457788999999999999999999999875 34445544 335799999999999999999 5
Q ss_pred cCCCCCCCccceEeeeccccCCC----------------------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCC
Q 014513 85 YNGTPMPGTEQNFRLNWASFGIG----------------------EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142 (423)
Q Consensus 85 l~g~~~~~~~~~v~~~~a~~~~~----------------------~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g 142 (423)
|+|..|.+..+.|.......... .........++|||+|||..+++++|+++| +.||
T Consensus 242 l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G 320 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELL-ESFG 320 (509)
T ss_pred CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC
Confidence 99999999666554211100000 000012245789999999999999999999 8999
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCC-CCC
Q 014513 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAY-TTP 221 (423)
Q Consensus 143 ~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 221 (423)
.|..+.|++++.+|.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.............. ..+.... ...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~ 397 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNG---MAPVTLLAKAL 397 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccc---ccccccccccc
Confidence 999999999999999999999999999999999999999999999999999865432211100000 0000000 000
Q ss_pred CccCCCCCCCCcceEEEecCCCC--C--------CHHHHHHHhhhcCCeEEEEEeCC---------CcEEEEEeCChHHH
Q 014513 222 VQVFPADNDITNTTIFVGNLDPN--V--------TEEELKQTFLHFGEIVNVKIPMG---------RGCGFVQFAARASA 282 (423)
Q Consensus 222 ~~~~~~~~~~~~~~l~V~nL~~~--~--------te~~L~~~F~~~G~I~~v~i~~~---------~g~aFV~F~~~~~A 282 (423)
..........+..+|+|.||... + ..++|+++|++||.|+.|.|++. .|++||+|.++++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 00001122345788999999642 1 23689999999999999999853 58999999999999
Q ss_pred HHHHHHhCCeEeCceEEEEEEcc
Q 014513 283 EEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 283 ~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
++|+..|||..|+|+.|.|.|..
T Consensus 478 ~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 478 EKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHcCCCEECCeEEEEEEeC
Confidence 99999999999999999999865
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.2e-37 Score=303.11 Aligned_cols=178 Identities=20% Similarity=0.370 Sum_probs=156.3
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
.....++|||+|||+.+++++|+++|++||+|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.+.+.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999876665
Q ss_pred eeccccCC----CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHH
Q 014513 99 LNWASFGI----GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 99 ~~~a~~~~----~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~ 174 (423)
........ ..........++|||+||++++++++|+++| +.||.|.+++|++|+.++++||||||+|.+.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF-s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 32111100 0111223345789999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhCCceecCcceEEecccCC
Q 014513 175 AMTEMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 175 a~~~~~g~~~~g~~i~v~~a~~~ 197 (423)
|+..||+..+.|+.|+|.++.++
T Consensus 262 AI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999988753
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.7e-38 Score=286.21 Aligned_cols=284 Identities=24% Similarity=0.422 Sum_probs=233.9
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC-CCCCccce
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT-PMPGTEQN 96 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~-~~~~~~~~ 96 (423)
....+.-+|||+-||..++|+||+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|++. .|+|-.+.
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34466778999999999999999999999999999999999999999999999999999999999999765 68899999
Q ss_pred EeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHH
Q 014513 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAM 176 (423)
Q Consensus 97 v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~ 176 (423)
|.+.+++.... ....+++||||-|+..++|.+++++| ++||.|++|.|++|.. +.+||||||+|.+.+.|..||
T Consensus 109 vqvk~Ad~E~e----r~~~e~KLFvg~lsK~~te~evr~iF-s~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 109 VQVKYADGERE----RIVEERKLFVGMLSKQCTENEVREIF-SRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred eeecccchhhh----ccccchhhhhhhccccccHHHHHHHH-HhhCccchhhheeccc-ccccceeEEEEehHHHHHHHH
Confidence 99999863221 22557899999999999999999999 9999999999999976 999999999999999999999
Q ss_pred HhhCCcee---cCcceEEecccCCCcccchhhh---------------------------------------------h-
Q 014513 177 TEMNGVFC---STRPMRISAATPKKTTGFQQQY---------------------------------------------A- 207 (423)
Q Consensus 177 ~~~~g~~~---~g~~i~v~~a~~~~~~~~~~~~---------------------------------------------~- 207 (423)
+.|||..- ...+|.|++|++++.+..+... .
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g 262 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGG 262 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccc
Confidence 99999764 4679999999987765432110 0
Q ss_pred ------------------------------hhcc------c-------C---------------------------CCC-
Q 014513 208 ------------------------------AVKA------T-------Y---------------------------PVA- 216 (423)
Q Consensus 208 ------------------------------~~~~------~-------~---------------------------~~~- 216 (423)
.... . . +.+
T Consensus 263 ~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~ 342 (510)
T KOG0144|consen 263 LPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTP 342 (510)
T ss_pred ccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCc
Confidence 0000 0 0 000
Q ss_pred -CCCC----------------------------------------------------------------CCccCCCCCCC
Q 014513 217 -AYTT----------------------------------------------------------------PVQVFPADNDI 231 (423)
Q Consensus 217 -~~~~----------------------------------------------------------------~~~~~~~~~~~ 231 (423)
.++. ......+.+.+
T Consensus 343 ~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGp 422 (510)
T KOG0144|consen 343 ANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGP 422 (510)
T ss_pred hhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCC
Confidence 0000 00000112556
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
....|||.+||.+.-+.+|-..|..||.|.+.++.. +++|+||.|++..+|..||..|||+.|+.++++|...+
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 677899999999999999999999999999988865 37999999999999999999999999999999999876
Q ss_pred cC
Q 014513 306 KQ 307 (423)
Q Consensus 306 ~~ 307 (423)
.+
T Consensus 503 ~~ 504 (510)
T KOG0144|consen 503 DR 504 (510)
T ss_pred cc
Confidence 44
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.3e-36 Score=279.66 Aligned_cols=281 Identities=23% Similarity=0.347 Sum_probs=222.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccc
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~ 103 (423)
.||||++||+.++.++|.++|+.+|+|..|-++.++-++.++||+||+|.-.+++++|++.+++..|.|+.+++.+....
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 78999999999999999999999999999999999989999999999999999999999999999999977766553222
Q ss_pred cCCC-----CC----CC--------C--CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEE
Q 014513 104 FGIG-----EK----RP--------D--AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164 (423)
Q Consensus 104 ~~~~-----~~----~~--------~--~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV 164 (423)
.... .+ ++ . ..+..+|.|+||||.+.+.+|+..| +.||.|.+|.|++.+. |+-.|||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vF-s~~G~V~Ei~IP~k~d-gklcGFaFV 163 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVF-SNFGKVVEIVIPRKKD-GKLCGFAFV 163 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHH-hhcceEEEEEcccCCC-CCccceEEE
Confidence 1111 00 00 0 1235689999999999999999999 9999999999998876 445599999
Q ss_pred EeCCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhh-----hh--------------hhc--------ccCCCCC
Q 014513 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ-----YA--------------AVK--------ATYPVAA 217 (423)
Q Consensus 165 ~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~-----~~--------------~~~--------~~~~~~~ 217 (423)
.|....+|+.|++.+|+..|.||+|-|.||.++..-..... .. ... .......
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeE 243 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEE 243 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccc
Confidence 99999999999999999999999999999987654322110 00 000 0000000
Q ss_pred ------------------------C--------CCCCccC-CCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEE
Q 014513 218 ------------------------Y--------TTPVQVF-PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264 (423)
Q Consensus 218 ------------------------~--------~~~~~~~-~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~ 264 (423)
. ....+.. ..+......+|||+|||+++|+++|+++|++||+|.++.
T Consensus 244 e~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 244 ETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred cccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEE
Confidence 0 0000000 122333458999999999999999999999999999998
Q ss_pred EeC------CCcEEEEEeCChHHHHHHHHHh-----CC-eEeCceEEEEEEccc
Q 014513 265 IPM------GRGCGFVQFAARASAEEAILRM-----QG-HMIGQQQVRISWGRK 306 (423)
Q Consensus 265 i~~------~~g~aFV~F~~~~~A~~Al~~l-----~g-~~i~g~~l~v~~a~~ 306 (423)
|.. ++|+|||.|.+..+|..||... .| ..|+||.|.|..|..
T Consensus 324 iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 324 IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 876 4799999999999999999987 34 668999999998873
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.7e-34 Score=268.47 Aligned_cols=168 Identities=28% Similarity=0.480 Sum_probs=151.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
......++|||+|||+++|+++|+++| +.||+|.+|+|++|+.|++++|||||+|.++++|++|++.|++..+.+++|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 455578899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC--
Q 014513 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-- 268 (423)
Q Consensus 191 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-- 268 (423)
|.++.+... ....++|||+|||..+|+++|+++|++||.|+.++|+.+
T Consensus 181 V~~a~p~~~------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~ 230 (346)
T TIGR01659 181 VSYARPGGE------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL 230 (346)
T ss_pred eeccccccc------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC
Confidence 998765321 122478999999999999999999999999999999865
Q ss_pred ----CcEEEEEeCChHHHHHHHHHhCCeEeCc--eEEEEEEcccCCC
Q 014513 269 ----RGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQDV 309 (423)
Q Consensus 269 ----~g~aFV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~a~~~~~ 309 (423)
||||||+|.++++|++||+.||+..+.+ ++|+|.+|+....
T Consensus 231 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 231 TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 4899999999999999999999999865 7999999986543
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.4e-32 Score=258.71 Aligned_cols=174 Identities=24% Similarity=0.412 Sum_probs=154.9
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
......++|||+|||++++|++|+++|+.||+|++|+|++++.+++++|||||+|.++++|++|++.||+..+.++.+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i-- 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL-- 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee--
Confidence 455578899999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred eeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 014513 98 RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (423)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~ 177 (423)
++.++.... .....++|||+|||+++|+++|+++| +.||.|..++|++|+.|++++|||||+|.+.++|++|++
T Consensus 180 ~V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 180 KVSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeecccccc-----cccccceeEEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 455543221 22345689999999999999999999 899999999999999999999999999999999999999
Q ss_pred hhCCceecC--cceEEecccCCCc
Q 014513 178 EMNGVFCST--RPMRISAATPKKT 199 (423)
Q Consensus 178 ~~~g~~~~g--~~i~v~~a~~~~~ 199 (423)
.||+..+.+ ++|+|.++.....
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HhCCCccCCCceeEEEEECCcccc
Confidence 999998865 6899988876543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-32 Score=259.65 Aligned_cols=238 Identities=30% Similarity=0.534 Sum_probs=213.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecccc
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASF 104 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~ 104 (423)
.|||+ ++++|.+|.++|+.+|+|++|+++++- | +-|||||.|.++++|++||.++|...+.| ..+++.|...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~--~~~rim~s~r 74 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKG--KPIRIMWSQR 74 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCC--cEEEeehhcc
Confidence 58999 899999999999999999999999998 6 99999999999999999999999999999 5677788764
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee
Q 014513 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (423)
Q Consensus 105 ~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~ 184 (423)
.... |||-||+++++...|.++| +.||.|.+|++.++.+ | ++|| ||+|.++++|++|+..+||..+
T Consensus 75 d~~~----------~~i~nl~~~~~~~~~~d~f-~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 75 DPSL----------VFIKNLDESIDNKSLYDTF-SEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred CCce----------eeecCCCcccCcHHHHHHH-HhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 4332 9999999999999999999 9999999999999975 5 9999 9999999999999999999999
Q ss_pred cCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEE
Q 014513 185 STRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264 (423)
Q Consensus 185 ~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~ 264 (423)
.+++|.|.....+..+...... ....-+.++|.+++.+++++.|.++|..+|.|.++.
T Consensus 141 ~~kki~vg~~~~~~er~~~~~~----------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~ 198 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLGE----------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVA 198 (369)
T ss_pred CCCeeEEeeccchhhhcccccc----------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEE
Confidence 9999999888776654321111 123357789999999999999999999999999999
Q ss_pred EeC-----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 265 IPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 265 i~~-----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
++. .++|+||.|.+.++|..|+..||+..++++.+.|..+..
T Consensus 199 v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 199 VMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred EeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 987 379999999999999999999999999999999988775
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.7e-31 Score=250.98 Aligned_cols=267 Identities=25% Similarity=0.460 Sum_probs=221.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecc
Q 014513 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (423)
Q Consensus 23 ~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a 102 (423)
...|||.||+++++..+|.+.|+.||.|++|++.++. +| ++|| ||+|+++++|.+|++.+||..+.++.+-+-+...
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3339999999999999999999999999999999997 66 9999 9999999999999999999999997776655443
Q ss_pred ccCCCCCCC-CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCC
Q 014513 103 SFGIGEKRP-DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (423)
Q Consensus 103 ~~~~~~~~~-~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g 181 (423)
...+..... ....-..++|.+++.+++++.|.++| +.+|+|.++.++.+.. ++++||+||.|.+.++|..|+..+++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f-~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF-SAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhh-cccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccC
Confidence 322211111 23345679999999999999999999 9999999999999965 77999999999999999999999999
Q ss_pred ceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeE
Q 014513 182 VFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV 261 (423)
Q Consensus 182 ~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~ 261 (423)
..+.+..+.|..+..+............ ..............|||.||+..++++.|+++|+.||.|.
T Consensus 231 ~~~~~~~~~V~~aqkk~e~~~~l~~~~~------------~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~ 298 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKSEREAELKRKFE------------QEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEIT 298 (369)
T ss_pred CcCCccceeecccccchhhHHHHhhhhH------------hhhhhccccccccccccccCccccchhHHHHHHhccccee
Confidence 9999999999888763332111000000 0000112234567899999999999999999999999999
Q ss_pred EEEEeC-----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 262 NVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 262 ~v~i~~-----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
+++|.. ++|||||.|.+.++|.+|+..+|+..++++.|.|.++..
T Consensus 299 s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 299 SAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred eEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 999976 479999999999999999999999999999999998873
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.4e-30 Score=258.83 Aligned_cols=174 Identities=22% Similarity=0.457 Sum_probs=150.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++|||||||+++++++|+++| +.||+|.+|+|+.|+.||+++|||||+|.+.++|++|++.|||..+.|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF-~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHH-HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999 89999999999999999999999999999999999999999999999999999854
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------C
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------G 268 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------~ 268 (423)
....... +............++|||+||+.++++++|+++|++||.|++++|.+ +
T Consensus 185 ~~~p~a~-------------------~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgks 245 (612)
T TIGR01645 185 SNMPQAQ-------------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 245 (612)
T ss_pred ccccccc-------------------cccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCc
Confidence 3221110 00000011122357999999999999999999999999999999976 3
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
||||||+|.+.++|.+||+.||+..|+|+.|+|.++....
T Consensus 246 KGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 246 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 7999999999999999999999999999999999998643
No 20
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.1e-29 Score=244.11 Aligned_cols=177 Identities=27% Similarity=0.492 Sum_probs=156.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
..++|||+|||+.+++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|||..+.+....+.+.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46689999999999999999999999999999999998889999999999999999999999999999998777777777
Q ss_pred cccCCCCCC-----------------------------------------------------------------------
Q 014513 102 ASFGIGEKR----------------------------------------------------------------------- 110 (423)
Q Consensus 102 a~~~~~~~~----------------------------------------------------------------------- 110 (423)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 642220000
Q ss_pred ----------------CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHH
Q 014513 111 ----------------PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 111 ----------------~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~ 174 (423)
.......+|||+|||+++++++|+++| ++||.|.+++|++|+.|+++||||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F-~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLF-GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 001122369999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhCCceecCcceEEecccCCCc
Q 014513 175 AMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 175 a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
|+..|||..+.||.|+|.+.+.+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999987643
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.7e-30 Score=234.40 Aligned_cols=168 Identities=27% Similarity=0.505 Sum_probs=150.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee---cCcceE
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STRPMR 190 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~---~g~~i~ 190 (423)
.+.-+||||.||..++|++|+++| ++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+.+|+.+.. ...+|.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lF-e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELF-EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHH-HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 556789999999999999999999 9999999999999999999999999999999999999999988664 456888
Q ss_pred EecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC---
Q 014513 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--- 267 (423)
Q Consensus 191 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~--- 267 (423)
|++|+..+++. +..++||||-|+..+||.+++++|++||.|++|.|.+
T Consensus 111 vk~Ad~E~er~-----------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~ 161 (510)
T KOG0144|consen 111 VKYADGERERI-----------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD 161 (510)
T ss_pred ecccchhhhcc-----------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc
Confidence 98887765531 3468999999999999999999999999999999988
Q ss_pred --CCcEEEEEeCChHHHHHHHHHhCCeE-eCc--eEEEEEEcccCCCCC
Q 014513 268 --GRGCGFVQFAARASAEEAILRMQGHM-IGQ--QQVRISWGRKQDVTG 311 (423)
Q Consensus 268 --~~g~aFV~F~~~~~A~~Al~~l~g~~-i~g--~~l~v~~a~~~~~~~ 311 (423)
+||||||+|++.+-|..||+.|||.. +.| .+|.|+||+.+..+.
T Consensus 162 ~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 162 GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 48999999999999999999999976 655 589999999765543
No 22
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.97 E-value=3e-30 Score=243.91 Aligned_cols=284 Identities=20% Similarity=0.376 Sum_probs=223.4
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
.+++.|++++-.|+-..++.+|.++|+.+|.|.+|.||.++.++.++|.|||+|.+.+++..|+ .|.|..+.|-.+.+.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 4677899999999999999999999999999999999999999999999999999999999999 799999999777776
Q ss_pred eeccccCCC------CC-CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHH
Q 014513 99 LNWASFGIG------EK-RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171 (423)
Q Consensus 99 ~~~a~~~~~------~~-~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~ 171 (423)
.+-+..... .. +.-..+-.+|+||||-+++++++|+..| ++||.|..|.+.+|..||+++||+||+|.+.++
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecHHH
Confidence 644432211 00 1112344459999999999999999999 999999999999999899999999999999999
Q ss_pred HHHHHHhhCCceecCcceEEecccCCCcccchhh------------h-----------hhhcccCC----C---------
Q 014513 172 RNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ------------Y-----------AAVKATYP----V--------- 215 (423)
Q Consensus 172 a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~------------~-----------~~~~~~~~----~--------- 215 (423)
|.+|+..|||..+-|+.|+|...+.+........ . .......+ .
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 9999999999999999999977554333221100 0 00000000 0
Q ss_pred C---------C-----CCCCCccCCCCCCCCcceEEEecCCCCCCH----------HHHHHHhhhcCCeEEEEEeCCC-c
Q 014513 216 A---------A-----YTTPVQVFPADNDITNTTIFVGNLDPNVTE----------EELKQTFLHFGEIVNVKIPMGR-G 270 (423)
Q Consensus 216 ~---------~-----~~~~~~~~~~~~~~~~~~l~V~nL~~~~te----------~~L~~~F~~~G~I~~v~i~~~~-g 270 (423)
+ . ...|... .+.-..++.++.+.|+-..-|+ +|+.+.+.+||+|..|.+.++. |
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~-~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g 491 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADA-SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAG 491 (549)
T ss_pred cccchHHhhcCCcCccccCcccc-ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCc
Confidence 0 0 0001100 1112256677888887443322 7888899999999999999865 9
Q ss_pred EEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 271 CGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 271 ~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
|.||.|.+.+.|..|+.+|||.+|.|+.|...|-.
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 99999999999999999999999999999999865
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.2e-29 Score=214.84 Aligned_cols=176 Identities=30% Similarity=0.500 Sum_probs=157.3
Q ss_pred CCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 13 QHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 13 ~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
+++........--|+|++|.+.++-++|++.|..||+|.++||++|..|++++||+||.|.+.++|++||+.|||.-|..
T Consensus 52 ~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 52 GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 33444455556679999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccceEeeeccccCCCCCCC-----------CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcce
Q 014513 93 TEQNFRLNWASFGIGEKRP-----------DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGY 161 (423)
Q Consensus 93 ~~~~v~~~~a~~~~~~~~~-----------~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~ 161 (423)
..|+.+|+.++..+... .+...++||||||+.-++|++|++.| +.||.|.+|+|.++ +||
T Consensus 132 --R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~F-s~fG~I~EVRvFk~------qGY 202 (321)
T KOG0148|consen 132 --RTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTF-SPFGPIQEVRVFKD------QGY 202 (321)
T ss_pred --ceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhc-ccCCcceEEEEecc------cce
Confidence 57889999876643321 23467899999999999999999999 99999999999998 579
Q ss_pred EEEEeCCHHHHHHHHHhhCCceecCcceEEecccCC
Q 014513 162 GFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 162 afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~ 197 (423)
+||.|.+.|.|.+||..+|+..+.|..+++.|....
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999999999999999999999999999997654
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=8.4e-28 Score=238.82 Aligned_cols=228 Identities=17% Similarity=0.223 Sum_probs=171.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEe-cCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIR-NKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~-v~~v~i~~-~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
.+.++|||+|||.++++++|.+.|++++. ++++.++. ....++++|||||+|.++++|..|++.|+...+......+.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35688999999999999999999999974 55554443 23456789999999999999999998886544332335677
Q ss_pred eeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhC--CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHH
Q 014513 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY--PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAM 176 (423)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~--g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~ 176 (423)
+.|+..............++|||+||+.++++++|+++| +.| |.|+.|++++ +||||+|.+.++|++|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F-~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSF-SEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHH-HhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHH
Confidence 888865544333334456789999999999999999999 899 9999998764 49999999999999999
Q ss_pred HhhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhh
Q 014513 177 TEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256 (423)
Q Consensus 177 ~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~ 256 (423)
++||+..|.|+.|+|.++.+........ ....... .........+.......+...+++++|++++.+++.+.++|..
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~-~~rg~gg-~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~ 364 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVR-YTRGTGG-RGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM 364 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcccccc-cccccCC-CcccccccccccCcccCccccccccccccccccccchhhcccc
Confidence 9999999999999999998764432110 0000000 0000001112223344556799999999999999999999998
Q ss_pred cCC
Q 014513 257 FGE 259 (423)
Q Consensus 257 ~G~ 259 (423)
.|.
T Consensus 365 ~g~ 367 (578)
T TIGR01648 365 PGP 367 (578)
T ss_pred Ccc
Confidence 876
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=6.8e-28 Score=241.51 Aligned_cols=172 Identities=28% Similarity=0.492 Sum_probs=149.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
...++|||+|||.++++++|+++| +.||.|.+|+|+.|+.+++++|||||+|.+.++|.+|+. ++|..+.|++|.|..
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F-~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFF-SKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 356789999999999999999999 899999999999999999999999999999999999997 999999999999987
Q ss_pred ccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------
Q 014513 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------ 267 (423)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------ 267 (423)
+............ ......+..++|||+|||..+|+++|+++|++||.|..|.+..
T Consensus 165 ~~~~~~~~~~~~~------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~ 226 (457)
T TIGR01622 165 SQAEKNRAAKAAT------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGR 226 (457)
T ss_pred cchhhhhhhhccc------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc
Confidence 6543322110000 0001112368999999999999999999999999999999984
Q ss_pred CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 268 GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 268 ~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.
T Consensus 227 ~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 227 SKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred cceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 47999999999999999999999999999999999987
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=218.41 Aligned_cols=283 Identities=20% Similarity=0.327 Sum_probs=215.1
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
..-.|+|||+.|.+.+.|+.|+..|..||+|.+|.+--+..|++.+|||||||+-+|.|+.|++.+||..+.|+.+++..
T Consensus 110 LaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 110 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999998776653
Q ss_pred eccccC----CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHH
Q 014513 100 NWASFG----IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRA 175 (423)
Q Consensus 100 ~~a~~~----~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a 175 (423)
-.+-.. +.....+...-++|||..+.++.++++|+..| +.||+|..|.+-+++.++.+|||+|++|.+..+...|
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 211100 00011123345789999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHhhCCceecCcceEEecccCCCcccchhhh----------------------------------hhhcccCC-------
Q 014513 176 MTEMNGVFCSTRPMRISAATPKKTTGFQQQY----------------------------------AAVKATYP------- 214 (423)
Q Consensus 176 ~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~----------------------------------~~~~~~~~------- 214 (423)
+..||-..++|.-++|-.+........+... .......+
T Consensus 269 iasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 9999999999999998776443322111000 00000000
Q ss_pred CCCC---------------CCCCccCC----------------------------------------------C------
Q 014513 215 VAAY---------------TTPVQVFP----------------------------------------------A------ 227 (423)
Q Consensus 215 ~~~~---------------~~~~~~~~----------------------------------------------~------ 227 (423)
.... ..|..+.. +
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 0000 00000000 0
Q ss_pred ------------CCCCCcceEEEecC--CCCCCH---HHHHHHhhhcCCeEEEEEeCCC----------cEEEEEeCChH
Q 014513 228 ------------DNDITNTTIFVGNL--DPNVTE---EELKQTFLHFGEIVNVKIPMGR----------GCGFVQFAARA 280 (423)
Q Consensus 228 ------------~~~~~~~~l~V~nL--~~~~te---~~L~~~F~~~G~I~~v~i~~~~----------g~aFV~F~~~~ 280 (423)
-....++.|.++|+ |.+++| .+|++.+.+||.|.+|.|...+ ---||+|+...
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 02234567778886 344543 6888999999999999997643 24699999999
Q ss_pred HHHHHHHHhCCeEeCceEEEEEE
Q 014513 281 SAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 281 ~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
++.+|.++|+|+.++|+++....
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHHHHHHhhccceecCceeehhh
Confidence 99999999999999999987653
No 27
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=5.9e-26 Score=208.16 Aligned_cols=171 Identities=19% Similarity=0.294 Sum_probs=140.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFA-HTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
...-|.+||.|||+++.+.+|+++|. +.|+|+-|.+..+. +|+++|+|.|||+++|.+++|++.||...+.++++.++
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34456699999999999999999995 57899999999998 99999999999999999999999999999999888876
Q ss_pred eeccc--------------------------------------cCCCCC-------------------------------
Q 014513 99 LNWAS--------------------------------------FGIGEK------------------------------- 109 (423)
Q Consensus 99 ~~~a~--------------------------------------~~~~~~------------------------------- 109 (423)
-.... ..+...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 52110 000000
Q ss_pred ---------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 110 ---------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 110 ---------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
--..+...++||+||...+..+.|.+.| ...|.|..+.+-.|++ |.++|+|.++|.++-+|..||..++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvf-gmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVF-GMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHh-ccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhc
Confidence 0011224579999999999999999999 8999999999999987 7999999999999999999999988
Q ss_pred CceecCcceEEec
Q 014513 181 GVFCSTRPMRISA 193 (423)
Q Consensus 181 g~~~~g~~i~v~~ 193 (423)
+.-+..+++.+..
T Consensus 278 ~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 278 RQGLFDRRMTVRL 290 (608)
T ss_pred cCCCccccceeec
Confidence 7665555554433
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=6.5e-27 Score=227.08 Aligned_cols=258 Identities=21% Similarity=0.347 Sum_probs=203.9
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
..+..+.|+|+|||..+..++|..+|..||+|..|.+.+. | --++|+|.++.+|.+|++.|..+.+....+ .
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~pl--y 452 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPL--Y 452 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCcc--c
Confidence 4455678999999999999999999999999999955422 2 249999999999999999888776654322 2
Q ss_pred eeccccCCC---------------C-------C----------CCC-------------CCCCceEEEeCCCCCCCHHHH
Q 014513 99 LNWASFGIG---------------E-------K----------RPD-------------AGPEHSIFVGDLAPDVTDYLL 133 (423)
Q Consensus 99 ~~~a~~~~~---------------~-------~----------~~~-------------~~~~~~l~vgnLp~~~t~~~l 133 (423)
+.|+....- . + ..+ ....++|||.||++++|.+.|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 222110000 0 0 000 001234999999999999999
Q ss_pred HHHHHhhCCCeeEEEEeeCCCCC---CCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhhhhhhc
Q 014513 134 QETFRSQYPSVRGAKVVTDPNTG---RSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVK 210 (423)
Q Consensus 134 ~~~F~~~~g~v~~v~i~~~~~tg---~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~ 210 (423)
...| ...|.|.++.|.+.+... .|.|||||+|.++++|+.|++.|+|..+.|+.|.|+.+..+...... .
T Consensus 533 ~~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g--K---- 605 (725)
T KOG0110|consen 533 EDLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG--K---- 605 (725)
T ss_pred HHHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc--c----
Confidence 9999 889999999998765421 35699999999999999999999999999999999988722211100 0
Q ss_pred ccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------CCcEEEEEeCChHHHHH
Q 014513 211 ATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEE 284 (423)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------~~g~aFV~F~~~~~A~~ 284 (423)
.-......++|+|.|||+..+-.+++++|..||.|.+|+|++ .+|||||+|-++.+|..
T Consensus 606 ---------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 606 ---------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred ---------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 001122268999999999999999999999999999999997 38999999999999999
Q ss_pred HHHHhCCeEeCceEEEEEEccc
Q 014513 285 AILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 285 Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
|+.+|.++.+-||+|.+.||+.
T Consensus 671 A~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 671 AFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred HHHhhcccceechhhheehhcc
Confidence 9999999999999999999984
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.9e-26 Score=209.18 Aligned_cols=201 Identities=21% Similarity=0.391 Sum_probs=160.1
Q ss_pred EEcCHHHHHHHHHHcCCCCCCCccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEe
Q 014513 71 EFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVV 150 (423)
Q Consensus 71 eF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~ 150 (423)
...+.++|.++|..-.|-.|.-..-. -.+.........+..+..+-||||.||.++.|++|.-+| ++.|+|-+++||
T Consensus 40 ~~~~~eaal~al~E~tgy~l~ve~gq--rk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplf-EkiG~I~elRLM 116 (506)
T KOG0117|consen 40 GVQSEEAALKALLERTGYTLVVENGQ--RKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLF-EKIGKIYELRLM 116 (506)
T ss_pred ccccHHHHHHHHHHhcCceEEEeccc--cccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHH-HhccceeeEEEe
Confidence 34457888888865444333210000 011111222333344567889999999999999999999 899999999999
Q ss_pred eCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee-cCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCC
Q 014513 151 TDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC-STRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADN 229 (423)
Q Consensus 151 ~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~-~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (423)
+|+.+|.+||||||+|.+.++|++|++.||+.+| .|+.|.|..+.
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv---------------------------------- 162 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV---------------------------------- 162 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee----------------------------------
Confidence 9999999999999999999999999999999998 78999887653
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCC-eEEEEEeC-------CCcEEEEEeCChHHHHHHHHHh-CCeE-eCceEE
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGE-IVNVKIPM-------GRGCGFVQFAARASAEEAILRM-QGHM-IGQQQV 299 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~-I~~v~i~~-------~~g~aFV~F~~~~~A~~Al~~l-~g~~-i~g~~l 299 (423)
.+|+|||||+|.+.++++|.+.|++.++ |++|.+.+ +||||||+|.++..|..|.+.| +|+. +-|..+
T Consensus 163 --an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 163 --ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred --ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 3699999999999999999999999975 66666654 5899999999999999999887 4443 889999
Q ss_pred EEEEcccCCCC
Q 014513 300 RISWGRKQDVT 310 (423)
Q Consensus 300 ~v~~a~~~~~~ 310 (423)
.|+||.++...
T Consensus 241 tVdWAep~~e~ 251 (506)
T KOG0117|consen 241 TVDWAEPEEEP 251 (506)
T ss_pred eeeccCcccCC
Confidence 99999976543
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=198.14 Aligned_cols=162 Identities=28% Similarity=0.567 Sum_probs=148.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..+.|.|.-||..+|+++|+.+| +..|+|++|++++|+.||.+.||+||-|-++++|++|+..+||..+..+.|+|++|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF-~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ccceeeeeecccccCHHHHHHHh-hcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 45679999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------C
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------G 268 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------~ 268 (423)
.|.... .....|||.+||...|..+|.++|++||.|..-+|.. +
T Consensus 119 RPSs~~------------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~s 168 (360)
T KOG0145|consen 119 RPSSDS------------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLS 168 (360)
T ss_pred cCChhh------------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccccee
Confidence 886543 3357899999999999999999999999998877765 5
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeC--ceEEEEEEcccC
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIG--QQQVRISWGRKQ 307 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~--g~~l~v~~a~~~ 307 (423)
||.|||+|+-+++|+.||+.|||..-. ..+|.|+||...
T Consensus 169 rGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 169 RGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 899999999999999999999999844 458999999854
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2.7e-26 Score=187.60 Aligned_cols=169 Identities=32% Similarity=0.546 Sum_probs=150.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
.....+||||||+..++++.|++.| -+.|+|.++++.+|+.|...+|||||+|.++++|+-|++-||...+.||+|+|.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3456789999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEE-EEeC----
Q 014513 193 AATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV-KIPM---- 267 (423)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v-~i~~---- 267 (423)
.+..... +...+..|||+||.+.+++..|.+.|+.||.+... +|++
T Consensus 85 kas~~~~-----------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t 135 (203)
T KOG0131|consen 85 KASAHQK-----------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT 135 (203)
T ss_pred ecccccc-----------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccC
Confidence 8873221 22335789999999999999999999999998762 3332
Q ss_pred --CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCCC
Q 014513 268 --GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (423)
Q Consensus 268 --~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 311 (423)
.+|||||.|.+.+.+.+|+..|||..++.++|+|+++.++...+
T Consensus 136 g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 136 GNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 47899999999999999999999999999999999999765443
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2.7e-26 Score=187.52 Aligned_cols=173 Identities=32% Similarity=0.579 Sum_probs=152.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
...||||+||+..++++.|.++|-++|+|++++|.+++.+...+|||||||.++|+|+-|++-||..++.|+.++++ .
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~--k 85 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN--K 85 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE--e
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999665554 4
Q ss_pred cccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG-AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 102 a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~-v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
++ ...+ .......|||+||.+++++..|.+.| +.||.+.. -++++++.||.++||+||.|.+.+.+.+|+..+|
T Consensus 86 as--~~~~--nl~vganlfvgNLd~~vDe~~L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 86 AS--AHQK--NLDVGANLFVGNLDPEVDEKLLYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred cc--cccc--cccccccccccccCcchhHHHHHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 43 1111 12223789999999999999999999 89998765 5889999999999999999999999999999999
Q ss_pred CceecCcceEEecccCCCccc
Q 014513 181 GVFCSTRPMRISAATPKKTTG 201 (423)
Q Consensus 181 g~~~~g~~i~v~~a~~~~~~~ 201 (423)
|+.+.++++.|.++..+....
T Consensus 161 gq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cchhcCCceEEEEEEecCCCc
Confidence 999999999999987665544
No 33
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=211.84 Aligned_cols=185 Identities=29% Similarity=0.453 Sum_probs=156.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
.+|||++||++++.++|.++| +.+|+|..+.+++++.++.+|||+||+|.-++++++|+.+.++..|.||.|+|..+..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~F-S~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFF-SYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecCCCccchhHHHHhh-hcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 789999999999999999999 9999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcccchhhhhhhcccCCCCCCCCC-CccCC--CCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----
Q 014513 197 KKTTGFQQQYAAVKATYPVAAYTTP-VQVFP--ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----- 268 (423)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~----- 268 (423)
+........... . ....+ .+..+ .....+...|.|+|||+.+.+.+|+.+|++||.|..|.|++.
T Consensus 85 R~r~e~~~~~e~-~------~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl 157 (678)
T KOG0127|consen 85 RARSEEVEKGEN-K------AVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL 157 (678)
T ss_pred cccchhcccccc-h------hhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc
Confidence 766542110000 0 00000 01001 112334789999999999999999999999999999999973
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
.|||||+|.+..+|.+|++.+|++.|+||+|-|.||-++..
T Consensus 158 cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 158 CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 49999999999999999999999999999999999986543
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=4.2e-25 Score=193.04 Aligned_cols=150 Identities=25% Similarity=0.475 Sum_probs=140.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
.+|||||||..+++.+|+.+| ++||+|.+|.|+++ ||||..+++..++.|++.|++-.|.|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 469999999999999999999 99999999999987 999999999999999999999999999999998877
Q ss_pred CCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEe
Q 014513 197 KKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQF 276 (423)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F 276 (423)
+... +++|+|+||.+.++.++|+..|++||.|++++|. |+|+||.|
T Consensus 74 Ksk~--------------------------------stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~ 119 (346)
T KOG0109|consen 74 KSKA--------------------------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHF 119 (346)
T ss_pred cCCC--------------------------------ccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEE
Confidence 6432 5899999999999999999999999999999998 78999999
Q ss_pred CChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 277 AARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 277 ~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
.-.++|..|++.|+++++.|++++|.++..+-.
T Consensus 120 d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 120 DRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred eeccchHHHHhcccccccccceeeeeeeccccc
Confidence 999999999999999999999999999885443
No 35
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.92 E-value=7.9e-23 Score=191.30 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=191.0
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
..++...|.+++|||.||++||+++|+.+ .|+++++.+. +|++.|-|||||.+++++++||+ .+-..|..+-+.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 34566779999999999999999999999 4778766664 79999999999999999999996 46666666555443
Q ss_pred e------eccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeCCCCCCCcceEEEEeCCHHH
Q 014513 99 L------NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG-AKVVTDPNTGRSKGYGFVKFLDENE 171 (423)
Q Consensus 99 ~------~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~-v~i~~~~~tg~~~G~afV~f~~~~~ 171 (423)
. .|........ .......|-+++||+.+|+++|.++| +....|.. +.++.++. +++.|-|||.|++.+.
T Consensus 82 ~~~~~e~d~~~~~~g~~--s~~~d~vVRLRGLPfscte~dI~~FF-aGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPN--SSANDGVVRLRGLPFSCTEEDIVEFF-AGLEIVPDGILLPMDQR-GRPTGEAFVQFESQES 157 (510)
T ss_pred ccCCccccccccCCCCC--CCCCCceEEecCCCccCcHHHHHHHh-cCCcccccceeeeccCC-CCcccceEEEecCHHH
Confidence 3 2322221111 11356678999999999999999999 77776666 55666654 8899999999999999
Q ss_pred HHHHHHhhCCceecCcceEEecccCCCcccch----------hhhhh------------h--------------------
Q 014513 172 RNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ----------QQYAA------------V-------------------- 209 (423)
Q Consensus 172 a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~----------~~~~~------------~-------------------- 209 (423)
|++|+. -|...+..|-|.|..+......... ..+.. .
T Consensus 158 ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 158 AEIALG-RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHHH-HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 999998 4666777777777655421111000 00000 0
Q ss_pred ------cccCCCCC------CCCCCc----cCC-----CCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCe-EEEEEeC
Q 014513 210 ------KATYPVAA------YTTPVQ----VFP-----ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI-VNVKIPM 267 (423)
Q Consensus 210 ------~~~~~~~~------~~~~~~----~~~-----~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I-~~v~i~~ 267 (423)
........ ...+.. ... .........+..++||...++.++..+|+..-.+ +.|.|..
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~ 316 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGP 316 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCC
Confidence 00000000 000000 000 0011122678889999999999999999977655 4455544
Q ss_pred C---CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 268 G---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 268 ~---~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
+ .|-|+|+|.|.++|..|+.. ++..+..+.|.+..-.
T Consensus 317 dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 317 DGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred CCccCCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 3 58999999999999999875 6677888888887543
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=3.1e-23 Score=210.69 Aligned_cols=176 Identities=17% Similarity=0.302 Sum_probs=144.9
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
....++|||+|||..+++++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..|++.|||..|.++.+.|..
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45668999999999999999999999999999999999988999999999999999999999999999999997666555
Q ss_pred eccccCCCCC---------------------CCCCCCCceEEEeCCCCCC----------CHHHHHHHHHhhCCCeeEEE
Q 014513 100 NWASFGIGEK---------------------RPDAGPEHSIFVGDLAPDV----------TDYLLQETFRSQYPSVRGAK 148 (423)
Q Consensus 100 ~~a~~~~~~~---------------------~~~~~~~~~l~vgnLp~~~----------t~~~l~~~F~~~~g~v~~v~ 148 (423)
.......... .....++..|++.||...- ..++|++.| +.||.|..|+
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIV 450 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEE
Confidence 3221110000 0011246678999996321 236799999 9999999999
Q ss_pred EeeC---CCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 149 VVTD---PNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 149 i~~~---~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
|+++ ..++..+|++||+|.+.++|.+|+..|||..|.|+.|.+.+...
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9875 33456789999999999999999999999999999999988654
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=8.2e-24 Score=194.32 Aligned_cols=172 Identities=30% Similarity=0.498 Sum_probs=151.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++||||+|+|+++++.|+++| +.||+|.++.+++|+.|++++||+||+|++++.+.+++. ...+.+.++.|.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf-~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYF-SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHh-cccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 57889999999999999999999 999999999999999999999999999999999999987 5677899999999999
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------ 268 (423)
.++....... ......+|||++||.++++++|+++|++||.|..+.++.+
T Consensus 83 v~r~~~~~~~------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~ 138 (311)
T KOG4205|consen 83 VSREDQTKVG------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP 138 (311)
T ss_pred cCcccccccc------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc
Confidence 8877643211 1114679999999999999999999999999999988764
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCCCCC
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSV 313 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~~~~ 313 (423)
+||+||+|.+++++.+++. .+.+.|+++.|.|..|.++....+.
T Consensus 139 rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 139 RGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccc
Confidence 7999999999999999765 5778899999999999987665543
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.90 E-value=8.1e-22 Score=179.92 Aligned_cols=276 Identities=18% Similarity=0.290 Sum_probs=212.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcce-EEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGY-GFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
+...-++.|+|+-+.++-+-|+++|++||.|..|.-+.. +.+| |+|+|.+.+.|+.|...|+|..|...+++++
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEE
Confidence 345667899999999999999999999999987754442 2355 9999999999999999999999999899988
Q ss_pred eecccc-----------CCCCC----------------------------------------------CCCCC-CCceEE
Q 014513 99 LNWASF-----------GIGEK----------------------------------------------RPDAG-PEHSIF 120 (423)
Q Consensus 99 ~~~a~~-----------~~~~~----------------------------------------------~~~~~-~~~~l~ 120 (423)
+.+..- ++... +.... .+..|.
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 843321 00000 00000 135688
Q ss_pred EeCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 121 VGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 121 vgnLp~-~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
|.||-. .+|.+-|...| +.||.|..|+|+.++. --|.|.+.|...|+-|++.|+|+.+.|++|+|..+....-
T Consensus 302 vsnln~~~VT~d~LftlF-gvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLF-GVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred EecCchhccchhHHHHHH-hhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 888865 58999999999 9999999999999854 3699999999999999999999999999999988765433
Q ss_pred ccch-----hhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEE--eCCCcEE
Q 014513 200 TGFQ-----QQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI--PMGRGCG 272 (423)
Q Consensus 200 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i--~~~~g~a 272 (423)
.... ..+.......+...+..|....-...-+++.+|.+.|+|.+++||+|+..|..-|-.++... .+++.++
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kma 455 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMA 455 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCccee
Confidence 2211 11112222222233333444444445567789999999999999999999998887766544 3478999
Q ss_pred EEEeCChHHHHHHHHHhCCeEeCce-EEEEEEccc
Q 014513 273 FVQFAARASAEEAILRMQGHMIGQQ-QVRISWGRK 306 (423)
Q Consensus 273 FV~F~~~~~A~~Al~~l~g~~i~g~-~l~v~~a~~ 306 (423)
.+++.++|+|..|+..+|.+.+++. .|||+|++.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999998755 999999874
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=4.5e-23 Score=189.48 Aligned_cols=177 Identities=26% Similarity=0.422 Sum_probs=151.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
.+.++|+|++|+++++++.|+.+|++||+|.+|.+++++.+++++||+||+|.+++.+.++|.. ....|.++.+..+..
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 3889999999999999999999999999999999999999999999999999999999999943 455666655444443
Q ss_pred ccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 101 WASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
...-. ...........+||||+||.++++++++++| ++||.|.++.++.|+.+.+++||+||.|.+++.+.+++. ..
T Consensus 83 v~r~~-~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~ 159 (311)
T KOG4205|consen 83 VSRED-QTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QK 159 (311)
T ss_pred cCccc-ccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceecc-cc
Confidence 33211 1111122246789999999999999999999 899999999999999999999999999999999999987 78
Q ss_pred CceecCcceEEecccCCCccc
Q 014513 181 GVFCSTRPMRISAATPKKTTG 201 (423)
Q Consensus 181 g~~~~g~~i~v~~a~~~~~~~ 201 (423)
-+.|.++++.|+.|.++....
T Consensus 160 f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeeecCceeeEeeccchhhcc
Confidence 888999999999999987653
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.1e-23 Score=187.44 Aligned_cols=170 Identities=23% Similarity=0.460 Sum_probs=146.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
-++||||.|.+++.|+.|+..| ..||+|+++.+..|+.|+++|||+||+|+-+|.|..|++.|||..++||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4679999999999999999999 899999999999999999999999999999999999999999999999999997433
Q ss_pred CCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------CC
Q 014513 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GR 269 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------~~ 269 (423)
.-... +.-..- ..+....-.+|||..+.++.+|+||+.+|+.||+|++|.+.+ .|
T Consensus 192 NmpQA--QpiID~-----------------vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~Hk 252 (544)
T KOG0124|consen 192 NMPQA--QPIIDM-----------------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK 252 (544)
T ss_pred CCccc--chHHHH-----------------HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCcc
Confidence 22111 100000 001112246899999999999999999999999999999976 38
Q ss_pred cEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 270 g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
||||++|.+..+...|+..||-+-++|+.|+|-.+.
T Consensus 253 GyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 253 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 999999999999999999999999999999998665
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.9e-22 Score=174.25 Aligned_cols=196 Identities=27% Similarity=0.464 Sum_probs=154.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee---cCcceE
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STRPMR 190 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~---~g~~i~ 190 (423)
..+++||||-|...-.|+++++.| ..||.|++|.+.+.+. |.+|||+||.|.+..+|..||..|+|..- -...+.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf-~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLF-QPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHh-cccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 367899999999999999999999 9999999999999875 99999999999999999999999999653 356788
Q ss_pred EecccCCCcccchhhh--------------------------------------------------------hhhc----
Q 014513 191 ISAATPKKTTGFQQQY--------------------------------------------------------AAVK---- 210 (423)
Q Consensus 191 v~~a~~~~~~~~~~~~--------------------------------------------------------~~~~---- 210 (423)
|++++..+++..+... ....
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 8888776664432110 0000
Q ss_pred ccCC---CCC------------------C-------------CC------------------------------------
Q 014513 211 ATYP---VAA------------------Y-------------TT------------------------------------ 220 (423)
Q Consensus 211 ~~~~---~~~------------------~-------------~~------------------------------------ 220 (423)
...| ... . +.
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 0000 000 0 00
Q ss_pred ----------------CCc--cCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------CCcEEEEEe
Q 014513 221 ----------------PVQ--VFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQF 276 (423)
Q Consensus 221 ----------------~~~--~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------~~g~aFV~F 276 (423)
+.. .......++.|.|||-.||.+..|.+|.+.|-+||.|++.++.. +|+||||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 000 00112567889999999999999999999999999999999876 479999999
Q ss_pred CChHHHHHHHHHhCCeEeCceEEEEEEcccCCCCC
Q 014513 277 AARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (423)
Q Consensus 277 ~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 311 (423)
+++.+|+.||.+|||+.|+=++|+|.+.+++...+
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999988776543
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=9e-23 Score=178.51 Aligned_cols=150 Identities=27% Similarity=0.472 Sum_probs=136.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecccc
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASF 104 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~ 104 (423)
+|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||-.+++..|+.|+..|+|-.|.|..++|+.+.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks-- 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS-- 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc--
Confidence 5999999999999999999999999999999886 799999999999999999999999996555543322
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee
Q 014513 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (423)
Q Consensus 105 ~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~ 184 (423)
.+..+.+|+||||.+.++..+|++.| ++||+|.++.|++| |+||.|...++|..|++.|++.++
T Consensus 74 -------Ksk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 74 -------KSKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred -------cCCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 25567889999999999999999999 99999999999987 999999999999999999999999
Q ss_pred cCcceEEecccCCCcc
Q 014513 185 STRPMRISAATPKKTT 200 (423)
Q Consensus 185 ~g~~i~v~~a~~~~~~ 200 (423)
.|++|+|..++++...
T Consensus 138 ~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRT 153 (346)
T ss_pred ccceeeeeeecccccc
Confidence 9999999999887654
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=1.8e-19 Score=164.66 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=191.5
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcC-------CC
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN-------GT 88 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~-------g~ 88 (423)
.....+.++.|-++|||++++|++|.+++..||.|..++..+.+ ..|||||.++++|...+.... +.
T Consensus 21 ~~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~ 94 (492)
T KOG1190|consen 21 QRSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQ 94 (492)
T ss_pred cccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCc
Confidence 33556789999999999999999999999999999999987765 379999999999998332111 11
Q ss_pred CCC-----------------CccceEeeeccccCC---------CC--CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhh
Q 014513 89 PMP-----------------GTEQNFRLNWASFGI---------GE--KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ 140 (423)
Q Consensus 89 ~~~-----------------~~~~~v~~~~a~~~~---------~~--~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~ 140 (423)
++. .+...+-........ .. ......+-..++|+++-..++-+-|...| ++
T Consensus 95 ~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvF-S~ 173 (492)
T KOG1190|consen 95 PIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVF-SK 173 (492)
T ss_pred ceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHH-hh
Confidence 111 000111000000000 00 11112233457889999999999999999 99
Q ss_pred CCCeeEEEEeeCCCCCCCcce-EEEEeCCHHHHHHHHHhhCCceecC--cceEEecccC----------CCcccchhhhh
Q 014513 141 YPSVRGAKVVTDPNTGRSKGY-GFVKFLDENERNRAMTEMNGVFCST--RPMRISAATP----------KKTTGFQQQYA 207 (423)
Q Consensus 141 ~g~v~~v~i~~~~~tg~~~G~-afV~f~~~~~a~~a~~~~~g~~~~g--~~i~v~~a~~----------~~~~~~~~~~~ 207 (423)
||.|..|.-... +.|| |.|.|.+.+.|..|...|+|+.+.+ +.++|.++.- +.+........
T Consensus 174 fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP 248 (492)
T KOG1190|consen 174 FGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLP 248 (492)
T ss_pred cceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCC
Confidence 999987644332 2333 8899999999999999999998854 4555554432 11100000000
Q ss_pred hh-------------cc---cCCCCCCCCCC-----ccCCCCCCC--CcceEEEecCCC-CCCHHHHHHHhhhcCCeEEE
Q 014513 208 AV-------------KA---TYPVAAYTTPV-----QVFPADNDI--TNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNV 263 (423)
Q Consensus 208 ~~-------------~~---~~~~~~~~~~~-----~~~~~~~~~--~~~~l~V~nL~~-~~te~~L~~~F~~~G~I~~v 263 (423)
.. .. ..+.++...|. ......... .++.|.|.||.. .+|.+-|..+|.-||.|.+|
T Consensus 249 ~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRV 328 (492)
T KOG1190|consen 249 VGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRV 328 (492)
T ss_pred CCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEE
Confidence 00 00 00000111110 000011111 268899999986 59999999999999999999
Q ss_pred EEeCC-CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCCC
Q 014513 264 KIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (423)
Q Consensus 264 ~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 311 (423)
+|..+ +.-|.|++.+...|+-|+..|+|++|-|++|+|.+++.+...-
T Consensus 329 kil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 329 KILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred EeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 99875 5789999999999999999999999999999999999665543
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.7e-20 Score=180.55 Aligned_cols=277 Identities=20% Similarity=0.366 Sum_probs=207.0
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhcc-----------CC-eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHH
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHT-----------GE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~-----------G~-v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al 82 (423)
..+......++++|+++|..++++.+..+|..- |+ +..|.+... +.+|||+|.+.++|..|+
T Consensus 167 ~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~ 240 (500)
T KOG0120|consen 167 MDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAM 240 (500)
T ss_pred cCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhh
Confidence 444567888999999999999999999999663 32 777776655 489999999999999999
Q ss_pred HHcCCCCCCCccceEeeecccc---------------CCC-CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE
Q 014513 83 QTYNGTPMPGTEQNFRLNWASF---------------GIG-EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG 146 (423)
Q Consensus 83 ~~l~g~~~~~~~~~v~~~~a~~---------------~~~-~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~ 146 (423)
.+++..+.|....+....... ... .........++++|++||...++..+.|.+ ..||.+..
T Consensus 241 -~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~ 318 (500)
T KOG0120|consen 241 -ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKA 318 (500)
T ss_pred -cccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchh
Confidence 678888877666554422110 000 111122245789999999999999999999 89999999
Q ss_pred EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCC
Q 014513 147 AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFP 226 (423)
Q Consensus 147 v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (423)
..++.|..+|-++||||.+|.+......|+..+||..+.++++.|..|............ ..+..-...+ ....
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~-----~~~~~~~~i~-~~~~ 392 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN-----ISQSQVPGIP-LLMT 392 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC-----ccccccccch-hhhc
Confidence 999999999999999999999999999999999999999999999988765443221111 0000000000 0001
Q ss_pred CCCCCCcceEEEecCC--CCC-CH-------HHHHHHhhhcCCeEEEEEeCC---------CcEEEEEeCChHHHHHHHH
Q 014513 227 ADNDITNTTIFVGNLD--PNV-TE-------EELKQTFLHFGEIVNVKIPMG---------RGCGFVQFAARASAEEAIL 287 (423)
Q Consensus 227 ~~~~~~~~~l~V~nL~--~~~-te-------~~L~~~F~~~G~I~~v~i~~~---------~g~aFV~F~~~~~A~~Al~ 287 (423)
+....+...|.+.|+= .+. .+ |+++..+++||.|.+|.|+.. -|..||+|.+.+++++|.+
T Consensus 393 q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~ 472 (500)
T KOG0120|consen 393 QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAME 472 (500)
T ss_pred ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHH
Confidence 2233445555555541 111 11 567777899999999999874 4889999999999999999
Q ss_pred HhCCeEeCceEEEEEEcc
Q 014513 288 RMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 288 ~l~g~~i~g~~l~v~~a~ 305 (423)
+|+|..+++++|..+|-.
T Consensus 473 ~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 473 ELTGRKFANRTVVASYYD 490 (500)
T ss_pred HccCceeCCcEEEEEecC
Confidence 999999999999998754
No 45
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=7.7e-21 Score=185.12 Aligned_cols=174 Identities=22% Similarity=0.429 Sum_probs=149.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC---CCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITG---QPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g---~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
+|||.||+++++.++|..+|...|.|.+|.|...+... .+.|||||+|.++++|++|++.|+|+.+.|..+.++++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999888765221 355999999999999999999999999999887777766
Q ss_pred cccC--CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh
Q 014513 102 ASFG--IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (423)
Q Consensus 102 a~~~--~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~ 179 (423)
.... .+.........+.|+|.|||+..+..+++.+| ..||.|.+|+|+.....+.++|||||+|-++.+|.+|+..|
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 2211 22222333345789999999999999999999 99999999999987556778999999999999999999999
Q ss_pred CCceecCcceEEecccCCCc
Q 014513 180 NGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 180 ~g~~~~g~~i~v~~a~~~~~ 199 (423)
.+..+.||.+.+.|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999976544
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.9e-21 Score=184.47 Aligned_cols=173 Identities=26% Similarity=0.417 Sum_probs=145.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
.+++|+--|+..+++-+|.++| +.+|.|.+|+++.|+.+++++|.|||+|.|.+.+..|+. |.|+.+.|-+|.|....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efF-s~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFF-SIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHH-HhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 4679999999999999999999 999999999999999999999999999999999999996 99999999999998765
Q ss_pred CCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------C
Q 014513 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------R 269 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~ 269 (423)
..+....... ...... ....+...||||||.+++++++|+.+|++||.|..|.+.++ +
T Consensus 257 aeknr~a~~s-----~a~~~k-----------~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~sk 320 (549)
T KOG0147|consen 257 AEKNRAANAS-----PALQGK-----------GFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSK 320 (549)
T ss_pred HHHHHHHhcc-----cccccc-----------ccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccccccc
Confidence 4433210000 000000 11122233999999999999999999999999999999874 7
Q ss_pred cEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 270 g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
|||||+|.+.++|++|+++|||.+|.|+.|+|.....
T Consensus 321 gfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 321 GFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred CcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999999999999999987663
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.6e-19 Score=156.19 Aligned_cols=176 Identities=25% Similarity=0.475 Sum_probs=148.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC-CCCCccceEeee
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT-PMPGTEQNFRLN 100 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~-~~~~~~~~v~~~ 100 (423)
+.|+|||+.|...-+|+|++.+|..||++.+|.+.+.. .|.+||+|||.|.+..+|..||..|+|. .+.|-...+.++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67889999999999999999999999999999999987 8999999999999999999999999986 466543333330
Q ss_pred ccc-----------------------------------------------------------------------------
Q 014513 101 WAS----------------------------------------------------------------------------- 103 (423)
Q Consensus 101 ~a~----------------------------------------------------------------------------- 103 (423)
+++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q 014513 104 -------------------------------------------------------------------------------- 103 (423)
Q Consensus 104 -------------------------------------------------------------------------------- 103 (423)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ----c---CCC---------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeC
Q 014513 104 ----F---GIG---------EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167 (423)
Q Consensus 104 ----~---~~~---------~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~ 167 (423)
+ ... ....+.+..+.|||--||.+..+.+|...| -.||.|.+.++..|+.|..+|.|+||.|.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF-~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHh-ccccceeeeeeeehhccccccceeeEecC
Confidence 0 000 001122346789999999999999999999 89999999999999999999999999999
Q ss_pred CHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 168 DENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 168 ~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
+..+++.||..|||..|+=+.++|....++..
T Consensus 336 Np~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 99999999999999999999999887766643
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=9.2e-19 Score=143.60 Aligned_cols=171 Identities=15% Similarity=0.239 Sum_probs=133.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
.+++|||||||.++.+.+|+++| .+||.|.+|.+..- -.+-.||||+|+++.+|+.||..-+|-.++|..|+|+++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlF-yKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLF-YKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHH-hhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 46889999999999999999999 89999999988654 345679999999999999999999999999999999998
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEE
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFV 274 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV 274 (423)
..-.........-.. .... -........+........|.|.+||++-+|+||++++.+-|.|+...+.++ |++.|
T Consensus 81 rggr~s~~~~G~y~g---ggrg-Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV 155 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSG---GGRG-GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVV 155 (241)
T ss_pred cCCCcccccccccCC---CCCC-CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceee
Confidence 654422111110000 0000 000111111222344578999999999999999999999999999999876 69999
Q ss_pred EeCChHHHHHHHHHhCCeEe
Q 014513 275 QFAARASAEEAILRMQGHMI 294 (423)
Q Consensus 275 ~F~~~~~A~~Al~~l~g~~i 294 (423)
+|...|+.+-|+..|....+
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeehhhHHHHHHhhccccc
Confidence 99999999999999987665
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=8.6e-18 Score=143.58 Aligned_cols=186 Identities=22% Similarity=0.359 Sum_probs=148.6
Q ss_pred CCceEEEeCCCCCCCHHHHHH----HHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 115 PEHSIFVGDLAPDVTDYLLQE----TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~----~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
+..+|||.||+..+..++|++ +| +.||.|.+|...+ |.+.+|-|||.|.+.+.|..|++.|+|..+.|++|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LF-sqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLF-SQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHH-HhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 344999999999999999988 99 9999999998865 478999999999999999999999999999999999
Q ss_pred EecccCCCcccchhhh------hh----hcc--cCCCC---------CCCCCCccCCCCCCCCcceEEEecCCCCCCHHH
Q 014513 191 ISAATPKKTTGFQQQY------AA----VKA--TYPVA---------AYTTPVQVFPADNDITNTTIFVGNLDPNVTEEE 249 (423)
Q Consensus 191 v~~a~~~~~~~~~~~~------~~----~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~ 249 (423)
|.+|..+.....+... .. ... ..+.. ....|... .....+++.+||+.|||..++.+.
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHH
Confidence 9999876554333110 00 000 00000 01111111 133467789999999999999999
Q ss_pred HHHHhhhcCCeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCCeEeC-ceEEEEEEcc
Q 014513 250 LKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGR 305 (423)
Q Consensus 250 L~~~F~~~G~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~i~-g~~l~v~~a~ 305 (423)
|..+|.+|..-..+++... ++.|||+|.+...|..|...++|..|- ...++|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999998874 799999999999999999999999876 8889998875
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.78 E-value=1.5e-16 Score=144.04 Aligned_cols=283 Identities=14% Similarity=0.173 Sum_probs=205.1
Q ss_pred CCCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 014513 12 HQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (423)
Q Consensus 12 ~~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~ 91 (423)
..+.++..+..+..|-|++|-..+.|.||.+.++.||+|.-|..+..+ ..|.|+|++.+.|++|+..--...+.
T Consensus 20 e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~ 93 (494)
T KOG1456|consen 20 EDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIY 93 (494)
T ss_pred ccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCccc
Confidence 445566678889999999999999999999999999999888776653 67999999999999999544333343
Q ss_pred CccceEeeeccccCCCCC-CCCCCCCce-EEE--eCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeC
Q 014513 92 GTEQNFRLNWASFGIGEK-RPDAGPEHS-IFV--GDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167 (423)
Q Consensus 92 ~~~~~v~~~~a~~~~~~~-~~~~~~~~~-l~v--gnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~ 167 (423)
...+...+++.......+ ..+....++ |.+ -|--..+|.+-|..+. -..|+|..|.|++. +| --|.|+|.
T Consensus 94 i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic-np~GkVlRIvIfkk--ng---VQAmVEFd 167 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTIC-NPQGKVLRIVIFKK--NG---VQAMVEFD 167 (494)
T ss_pred ccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhc-CCCCceEEEEEEec--cc---eeeEEeec
Confidence 333444555553332222 223333333 333 4445678999999999 89999999988875 23 36999999
Q ss_pred CHHHHHHHHHhhCCceec--CcceEEecccCCCcccchhhh--------------hhhc---------------------
Q 014513 168 DENERNRAMTEMNGVFCS--TRPMRISAATPKKTTGFQQQY--------------AAVK--------------------- 210 (423)
Q Consensus 168 ~~~~a~~a~~~~~g~~~~--g~~i~v~~a~~~~~~~~~~~~--------------~~~~--------------------- 210 (423)
+.+.|++|.+.|||-.|. -..|+|.+|.+.+....+... ....
T Consensus 168 sv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G 247 (494)
T KOG1456|consen 168 SVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGG 247 (494)
T ss_pred hhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCC
Confidence 999999999999998873 457888888775443221100 0000
Q ss_pred --ccCCCC-----CCCCCC----------ccCCCCCCCCcceEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeCCC-cE
Q 014513 211 --ATYPVA-----AYTTPV----------QVFPADNDITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMGR-GC 271 (423)
Q Consensus 211 --~~~~~~-----~~~~~~----------~~~~~~~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~I~~v~i~~~~-g~ 271 (423)
..+... ....|+ ....+....+.+.+.|-+|.- .+.-+.|..+|-.||.|..|++++.+ |.
T Consensus 248 ~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gt 327 (494)
T KOG1456|consen 248 GHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGT 327 (494)
T ss_pred CCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccce
Confidence 000000 000010 011123445678999999986 47889999999999999999999864 99
Q ss_pred EEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 272 GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 272 aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
|.|+..|..+.++|+..||+..+-|.+|.|.+++.
T Consensus 328 amVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 328 AMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred eEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 99999999999999999999999999999998873
No 51
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=4.3e-17 Score=153.09 Aligned_cols=165 Identities=19% Similarity=0.287 Sum_probs=131.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
..-|-+.+|||++|+++|.++| +.++ |+.+.+.+ .+|++.|-|||+|.+++++++|++ .+...+..|-|.|-.+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff-~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFF-SNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHH-hcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 4457789999999999999999 7775 88866655 479999999999999999999998 68888999999998876
Q ss_pred CCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEE-EEEeC-----CC
Q 014513 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN-VKIPM-----GR 269 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~-v~i~~-----~~ 269 (423)
.......- ....+....+...|.+++||+.||++||.+||+..-.|.. |.++. ..
T Consensus 85 ~~e~d~~~-------------------~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~t 145 (510)
T KOG4211|consen 85 GAEADWVM-------------------RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPT 145 (510)
T ss_pred Cccccccc-------------------cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcc
Confidence 65442110 0111122245688999999999999999999998866665 33333 24
Q ss_pred cEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 270 g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
|-|||+|++.+.|++||.. |.+.|+.|.|.|..+.
T Consensus 146 GEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 146 GEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred cceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 8999999999999999986 5578999999998776
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=1.9e-17 Score=137.66 Aligned_cols=80 Identities=29% Similarity=0.599 Sum_probs=73.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC------CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM------GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~------~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
.....++|||+|||.++|+++|+++|++||.|+++.|.. ++|||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344578999999999999999999999999999999975 37999999999999999999999999999999999
Q ss_pred EcccCC
Q 014513 303 WGRKQD 308 (423)
Q Consensus 303 ~a~~~~ 308 (423)
+++.+.
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 998553
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2.2e-17 Score=135.54 Aligned_cols=155 Identities=20% Similarity=0.301 Sum_probs=128.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
.+.+++|||+|||.++.|.+|+++|.+||.|..|.+.... .+..||||+|++..+|+.|+.--+|-.+.+..+.|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4567899999999999999999999999999999875432 3467999999999999999999999999997777766
Q ss_pred eccccCCCCC-------------------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcc
Q 014513 100 NWASFGIGEK-------------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKG 160 (423)
Q Consensus 100 ~~a~~~~~~~-------------------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G 160 (423)
.......... .+...+...|.|.+||++-+..+|++++ ...|.|-...+.+| |
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHm-ReaGdvCfadv~rD-------g 151 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHM-REAGDVCFADVQRD-------G 151 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHH-HhhCCeeeeeeecc-------c
Confidence 5443211111 1223356789999999999999999999 78999999988887 3
Q ss_pred eEEEEeCCHHHHHHHHHhhCCceec
Q 014513 161 YGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 161 ~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
.+.|+|...++.+-|+++|+.+.+.
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeeeeeehhhHHHHHHhhcccccc
Confidence 8999999999999999998877663
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=1.2e-16 Score=136.61 Aligned_cols=165 Identities=22% Similarity=0.413 Sum_probs=139.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 21 EEVRTLWIGDLQYWFDENYLSS----CFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~----~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
.+..||||.||...+..++|+. +|++||.|.+|...+ +.+.+|.|||.|++.+.|..|+..|+|..+.++.+.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3444999999999999999987 999999999887766 567899999999999999999999999999998888
Q ss_pred EeeeccccCCCCC-------------------------------------------CCCCCCCceEEEeCCCCCCCHHHH
Q 014513 97 FRLNWASFGIGEK-------------------------------------------RPDAGPEHSIFVGDLAPDVTDYLL 133 (423)
Q Consensus 97 v~~~~a~~~~~~~-------------------------------------------~~~~~~~~~l~vgnLp~~~t~~~l 133 (423)
+.......+...+ .....+...+|+.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 8765443222211 122456778999999999999999
Q ss_pred HHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec-CcceEEecc
Q 014513 134 QETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAA 194 (423)
Q Consensus 134 ~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~-g~~i~v~~a 194 (423)
...| ..|....+++++... ++.|||+|.++..+..|...+.+..+. ...|.|..+
T Consensus 164 ~~lf-~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 164 SDLF-EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHH-hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 9999 899999999998764 469999999999999999999998875 777777655
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.73 E-value=6.9e-15 Score=133.37 Aligned_cols=273 Identities=18% Similarity=0.196 Sum_probs=202.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccc
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~ 103 (423)
..+-|-|-.+.+|-+-|..++...|+|..|-|++.. --.|.|||++.+.|++|...|||..|....+++++.++.
T Consensus 123 Ll~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 123 LLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred EEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 334455556789999999999999999999888752 246999999999999999999999999888888884443
Q ss_pred cCCC------------------------------------------------------------------------C---
Q 014513 104 FGIG------------------------------------------------------------------------E--- 108 (423)
Q Consensus 104 ~~~~------------------------------------------------------------------------~--- 108 (423)
..+. .
T Consensus 198 P~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g 277 (494)
T KOG1456|consen 198 PTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRG 277 (494)
T ss_pred cceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCC
Confidence 1000 0
Q ss_pred --CCCCCCCCceEEEeCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec
Q 014513 109 --KRPDAGPEHSIFVGDLAPD-VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 109 --~~~~~~~~~~l~vgnLp~~-~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
......+...++|.+|... +.-+.|..+| -.||.|..|++++.+. |-|.|++.|..++++|+..||+..+.
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~-ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lf 351 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLF-CLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLF 351 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhh-hhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccc
Confidence 0001113456888999855 5678899999 8999999999999753 68999999999999999999999999
Q ss_pred CcceEEecccCCCcccchhhh-----hhhcccC--CCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcC
Q 014513 186 TRPMRISAATPKKTTGFQQQY-----AAVKATY--PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258 (423)
Q Consensus 186 g~~i~v~~a~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G 258 (423)
|.+|.|..+........+.-. .+-+... -...+..|.+........++++|..-|.|..+||+.|.++|...+
T Consensus 352 G~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~ 431 (494)
T KOG1456|consen 352 GGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD 431 (494)
T ss_pred cceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC
Confidence 999999877654333221110 0000000 111223344444555667889999999999999999999997654
Q ss_pred C-eEEEEEeCCC----cEEEEEeCChHHHHHHHHHhCCeEeCce------EEEEEEcccC
Q 014513 259 E-IVNVKIPMGR----GCGFVQFAARASAEEAILRMQGHMIGQQ------QVRISWGRKQ 307 (423)
Q Consensus 259 ~-I~~v~i~~~~----g~aFV~F~~~~~A~~Al~~l~g~~i~g~------~l~v~~a~~~ 307 (423)
. -++++|...| -.|.++|++.++|..||..||...|.+. .|++.|+.++
T Consensus 432 v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 432 VPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 3 4566666543 5789999999999999999998888653 5666666543
No 56
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.72 E-value=5.4e-16 Score=140.90 Aligned_cols=280 Identities=15% Similarity=0.153 Sum_probs=186.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
.++...|..++||+..++.+|-.+|..--...--+.+.....|...|.+.|.|.+.|.-.-|++. +...+..+.+.+--
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 44566789999999999999999996542222222333334677889999999999999999975 44455554443322
Q ss_pred -------eccccCCCCCCCCC--CCCceEEEeCCCCCCCHHHHHHHHHhh----CCCeeEEEEeeCCCCCCCcceEEEEe
Q 014513 100 -------NWASFGIGEKRPDA--GPEHSIFVGDLAPDVTDYLLQETFRSQ----YPSVRGAKVVTDPNTGRSKGYGFVKF 166 (423)
Q Consensus 100 -------~~a~~~~~~~~~~~--~~~~~l~vgnLp~~~t~~~l~~~F~~~----~g~v~~v~i~~~~~tg~~~G~afV~f 166 (423)
..+.....+..+-. ..--.|-+++||++.++.++.++| .. .|..++|-+++.++ ||..|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF-~~~cpv~~g~egvLFV~rpd-grpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFF-GPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhc-CCCCcccCCccceEEEECCC-CCcccceEEEe
Confidence 11211111211111 223346679999999999999999 42 23566777777654 99999999999
Q ss_pred CCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhhhhhh-cccCCCCCCC--CCCccCCCCCCCCcceEEEecCCC
Q 014513 167 LDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAV-KATYPVAAYT--TPVQVFPADNDITNTTIFVGNLDP 243 (423)
Q Consensus 167 ~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nL~~ 243 (423)
..+++|..|+. .|...++.|-|.+.+++...-...-...... .......+.. .|... -.......+|.+++||+
T Consensus 214 a~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~--~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 214 ACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARL--VPPTRSKDCVRLRGLPY 290 (508)
T ss_pred cCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCcccc--CCCCCCCCeeEecCCCh
Confidence 99999999998 4666777777777665432211110000000 0000000000 01111 11122367899999999
Q ss_pred CCCHHHHHHHhhhcCCeEE---EEEeC-----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 244 NVTEEELKQTFLHFGEIVN---VKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 244 ~~te~~L~~~F~~~G~I~~---v~i~~-----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
..+.|+|.+||..|..-+. |.+.. -.|-|||+|.+.++|..|...+|++....|.|+|.-+.
T Consensus 291 ~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 291 EATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9999999999999964333 33332 25899999999999999999999888889999998766
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.1e-16 Score=133.15 Aligned_cols=86 Identities=34% Similarity=0.582 Sum_probs=80.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
....++|||+|||+++++++|+++| +.||.|.+++|+.|+.|++++|||||+|.+.++|+.|++.||+..+.+++|+|.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4457789999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc
Q 014513 193 AATPKKT 199 (423)
Q Consensus 193 ~a~~~~~ 199 (423)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9876544
No 58
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=7.8e-17 Score=139.31 Aligned_cols=166 Identities=20% Similarity=0.347 Sum_probs=133.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCC
Q 014513 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 118 ~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~ 197 (423)
.+|||+||+.+.+.+|.++| ..||.|.++.+.. ||+||+|.+..+|..|+..+++..+.+-.+.+.++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f-~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFF-KGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHH-hhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 58999999999999999999 8999999987754 58999999999999999999999998888888887754
Q ss_pred CcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeC
Q 014513 198 KTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFA 277 (423)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~ 277 (423)
..... .+.++...+............+.++|.+++..+.+.+|.++|.++|.+....+ .++++||+|+
T Consensus 74 ~~~~g----------~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs 141 (216)
T KOG0106|consen 74 RRGRG----------RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFS 141 (216)
T ss_pred ccccC----------CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeeh
Confidence 33220 00000000001111122345789999999999999999999999999966655 5899999999
Q ss_pred ChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 278 ARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 278 ~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
+.++|++|+..|++..+.++.|++...
T Consensus 142 ~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 142 EQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhhcchhccchhhcCceeeeccc
Confidence 999999999999999999999999443
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.67 E-value=2.6e-15 Score=138.65 Aligned_cols=186 Identities=18% Similarity=0.308 Sum_probs=144.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
.+++||.|||+++...+|+++|+++.|+|..|.++.|.+ |++||||.|+|+++|.+++|++.||...+.||+|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 466999999999999999999999999999999999965 9999999999999999999999999999999999997654
Q ss_pred CCCcccch-----------------hhhhhhcccC-----------------CCC------------------------C
Q 014513 196 PKKTTGFQ-----------------QQYAAVKATY-----------------PVA------------------------A 217 (423)
Q Consensus 196 ~~~~~~~~-----------------~~~~~~~~~~-----------------~~~------------------------~ 217 (423)
........ .......... .+. .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 32111100 0000000000 000 0
Q ss_pred CCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC-----CCcEEEEEeCChHHHHHHHHHhCCe
Q 014513 218 YTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGH 292 (423)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~-----~~g~aFV~F~~~~~A~~Al~~l~g~ 292 (423)
+..+.. .-..+...++||.||...+....|++.|.-.|+|+.+.+.. ++|++.++|+++-+|..||..+++.
T Consensus 203 Flr~~h---~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 203 FLRSLH---IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhcc---CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 000000 01344557899999999999999999999999999887754 4799999999999999999999987
Q ss_pred EeCceEEEEEEcc
Q 014513 293 MIGQQQVRISWGR 305 (423)
Q Consensus 293 ~i~g~~l~v~~a~ 305 (423)
-+..++..+.+.+
T Consensus 280 g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 280 GLFDRRMTVRLDR 292 (608)
T ss_pred CCccccceeeccc
Confidence 7888888888765
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.66 E-value=6.4e-15 Score=132.65 Aligned_cols=188 Identities=18% Similarity=0.224 Sum_probs=142.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE--------EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--------AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~--------v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
.+.+|||.|||.++|.+++.++| +++|-|.. |++.++.. |..||=|.+.|-..++++.|+..|++..+.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~-sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVM-SKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHH-HhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45679999999999999999999 89987764 78888865 9999999999999999999999999999999
Q ss_pred cceEEecccCCCcccchhhh---------hhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCC----CCC-------
Q 014513 187 RPMRISAATPKKTTGFQQQY---------AAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDP----NVT------- 246 (423)
Q Consensus 187 ~~i~v~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~----~~t------- 246 (423)
+.|+|..|.-.......... ..........--..|-. .........++|.+.|+-. ..+
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999988642221111000 00000000000011111 2233445678999999842 223
Q ss_pred HHHHHHHhhhcCCeEEEEEe--CCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 247 EEELKQTFLHFGEIVNVKIP--MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 247 e~~L~~~F~~~G~I~~v~i~--~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
.++|++-+++||.|.+|.|. ...|.+-|.|.+.++|..||+.|+|+.++||.|..+.-.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 36778889999999999997 457999999999999999999999999999999988655
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.65 E-value=2.7e-15 Score=127.02 Aligned_cols=180 Identities=23% Similarity=0.333 Sum_probs=127.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeC-CCCCCCcceEEEEeCCHHHHHHHHHhhCCceec---Ccce
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS---TRPM 189 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~-~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~---g~~i 189 (423)
..-++|||.+||.++...+|..+| ..|-..+.+.+... +...-.+-+|||+|.+..+|..|+..|||..|+ +..+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLF-R~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLF-RRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHh-ccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 346899999999999999999999 67766777666543 332345689999999999999999999999984 6788
Q ss_pred EEecccCCCcccchhhhhhhc--cc----------------------------CC--CCC-----------------CCC
Q 014513 190 RISAATPKKTTGFQQQYAAVK--AT----------------------------YP--VAA-----------------YTT 220 (423)
Q Consensus 190 ~v~~a~~~~~~~~~~~~~~~~--~~----------------------------~~--~~~-----------------~~~ 220 (423)
+|..|................ .. .+ .+. ...
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 888876543322211110000 00 00 000 000
Q ss_pred CC-ccC------CCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC--CCcEEEEEeCChHHHHHHHHHhCC
Q 014513 221 PV-QVF------PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQG 291 (423)
Q Consensus 221 ~~-~~~------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~--~~g~aFV~F~~~~~A~~Al~~l~g 291 (423)
|. ... .........+|||.||..++||++|+++|+.|......+|.. +...|||+|++.+.|..|+..|+|
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 00 000 001223456899999999999999999999998777766654 457899999999999999999999
Q ss_pred eEe
Q 014513 292 HMI 294 (423)
Q Consensus 292 ~~i 294 (423)
..|
T Consensus 271 ~~~ 273 (284)
T KOG1457|consen 271 NLL 273 (284)
T ss_pred cee
Confidence 876
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3e-15 Score=133.73 Aligned_cols=79 Identities=22% Similarity=0.458 Sum_probs=73.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.....++|+|+|||+...|-||+..|++||+|.+|+|.. +||||||+|++.+||++|.++|||.+|.||+|+|..|
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344568999999999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred ccC
Q 014513 305 RKQ 307 (423)
Q Consensus 305 ~~~ 307 (423)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 854
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=130.01 Aligned_cols=79 Identities=38% Similarity=0.523 Sum_probs=72.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
-++||||+|+|++..+.|+++| ++||+|.+..|+.|+.||||||||||+|+|.+.|.+|++. -.-.|+||+..+..|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 4679999999999999999999 9999999999999999999999999999999999999983 3456799999888875
Q ss_pred C
Q 014513 196 P 196 (423)
Q Consensus 196 ~ 196 (423)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.5e-15 Score=107.66 Aligned_cols=65 Identities=40% Similarity=0.771 Sum_probs=62.2
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEE
Q 014513 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (423)
Q Consensus 236 l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~ 300 (423)
|||+|||.++|+++|+++|++||.|..+.+..+ +++|||+|.+.++|++|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999873 79999999999999999999999999999986
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=9.1e-15 Score=119.51 Aligned_cols=79 Identities=28% Similarity=0.508 Sum_probs=73.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCCC
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 311 (423)
.++||||||+..+++.||..+|..||.|.+|.|... .|||||+|+++.+|+.|+..|+|+.|+|..|+|++........
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~~ 89 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRGS 89 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcccc
Confidence 699999999999999999999999999999999875 6999999999999999999999999999999999988655433
No 66
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.56 E-value=2.5e-13 Score=122.52 Aligned_cols=172 Identities=15% Similarity=0.288 Sum_probs=136.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV--------SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~ 91 (423)
+.-...|||.|||.++|.+++.++|+++|.|. .||+.++. .|..+|-|+|.|-..+++..|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44455699999999999999999999999865 58899988 6999999999999999999999999999999
Q ss_pred CccceEeeeccccCCC---------------------------------CCCCCCCCCceEEEeCCC----CCCC-----
Q 014513 92 GTEQNFRLNWASFGIG---------------------------------EKRPDAGPEHSIFVGDLA----PDVT----- 129 (423)
Q Consensus 92 ~~~~~v~~~~a~~~~~---------------------------------~~~~~~~~~~~l~vgnLp----~~~t----- 129 (423)
|..++|.. |.+... .........++|.+.|+= .+.+
T Consensus 210 g~~~rVer--Akfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 GKKLRVER--AKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred CcEEEEeh--hhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 85555544 322100 011122345678888872 2233
Q ss_pred --HHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 130 --DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 130 --~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
+++|.+.. ++||.|..|.|.-. .+.|.+-|.|.+.++|..|++.|+|..|.||.|..+....+..
T Consensus 288 dlkedl~eec-~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 288 DLKEDLTEEC-EKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHH-HHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 45667777 89999999977643 4688999999999999999999999999999999988776544
No 67
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=6.4e-15 Score=127.50 Aligned_cols=151 Identities=21% Similarity=0.389 Sum_probs=126.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccc
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~ 103 (423)
..+||++||+.+.+.+|..+|..||.+.+|.+.. ||+||+|.+..+|..|+-.||+..|.+-. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4699999999999999999999999999887633 78899999999999999999999999965 5556655
Q ss_pred cC---------------CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCC
Q 014513 104 FG---------------IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLD 168 (423)
Q Consensus 104 ~~---------------~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~ 168 (423)
.. ...........+.++|.+++..+...+|.+.| ..+|++....+ ..+++||+|..
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~-~~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHF-RPAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhh-cccCCCchhhh--------hccccceeehh
Confidence 21 11112223456789999999999999999999 89999855444 34589999999
Q ss_pred HHHHHHHHHhhCCceecCcceEEec
Q 014513 169 ENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 169 ~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
.+++.+|+..+++..+.++.|.+..
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhhhhcchhccchhhcCceeeecc
Confidence 9999999999999999999999943
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.4e-14 Score=112.08 Aligned_cols=74 Identities=31% Similarity=0.612 Sum_probs=70.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCC------cEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~------g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
.+++||||||++.++||+|.++|++.|+|..|.+..+| |||||+|.+.++|..|++-++|+.++.++|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 47999999999999999999999999999999998764 999999999999999999999999999999999866
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2.5e-14 Score=104.15 Aligned_cols=70 Identities=40% Similarity=0.762 Sum_probs=67.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 119 l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
|||+|||+++++++|+++| +.||.|..+.++.+ .+++++|+|||+|.+.++|++|++.++|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f-~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFF-SQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHH-HTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHH-HHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999 89999999999998 6789999999999999999999999999999999875
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=5.2e-14 Score=125.14 Aligned_cols=73 Identities=29% Similarity=0.389 Sum_probs=68.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC---CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~---~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
.++|||+||++.+|+++|+++|+.||.|++|.|+.+ +|||||+|.++++|+.||. |+|..|+|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999999999999999999999999999875 6999999999999999995 999999999999998774
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=8.5e-14 Score=119.83 Aligned_cols=85 Identities=25% Similarity=0.407 Sum_probs=78.6
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
..-++..+|.|.||+.+++|++|+++|..||.|..|.+.+++.||.++|||||.|.+.++|.+||..|||.-+.. +.+
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~--LIL 261 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN--LIL 261 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce--EEE
Confidence 345578899999999999999999999999999999999999999999999999999999999999999998877 777
Q ss_pred eeecccc
Q 014513 98 RLNWASF 104 (423)
Q Consensus 98 ~~~~a~~ 104 (423)
++.|+.+
T Consensus 262 rvEwskP 268 (270)
T KOG0122|consen 262 RVEWSKP 268 (270)
T ss_pred EEEecCC
Confidence 8888753
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=2.9e-13 Score=126.36 Aligned_cols=145 Identities=31% Similarity=0.505 Sum_probs=114.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
.++|||+|||.++++++|.++| +.||.|..+.+..++.+++++|||||+|.+.++|..|+..+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999 899999999999999899999999999999999999999999999999999999965
Q ss_pred C-CCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC
Q 014513 196 P-KKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG 268 (423)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~ 268 (423)
. .......... ......................+++++++..++..++...|..+|.+..+.+...
T Consensus 194 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 194 PASQPRSELSNN-------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccccccc-------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 4 1111000000 0000000011112234455688999999999999999999999999988877664
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.4e-14 Score=109.96 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=77.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
.+++||||||++.++|++|.++| +++|+|+.|.|=.|+.+..+.|||||+|.+.++|+.|++-+++..++.++|++.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 47889999999999999999999 99999999999999999999999999999999999999999999999999999986
Q ss_pred cCC
Q 014513 195 TPK 197 (423)
Q Consensus 195 ~~~ 197 (423)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 74
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=7e-14 Score=119.98 Aligned_cols=82 Identities=28% Similarity=0.462 Sum_probs=72.2
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
...-.+|||++|+|.+..+.|+.+|++||+|++..|+.|+.||+++||+||+|++.++|++|.+. -+-.|.||...+++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34556799999999999999999999999999999999999999999999999999999999975 44677887777666
Q ss_pred ecc
Q 014513 100 NWA 102 (423)
Q Consensus 100 ~~a 102 (423)
...
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 443
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=1.5e-12 Score=110.54 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=118.1
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEe-cCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC---cc
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR-NKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG---TE 94 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~-~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~---~~ 94 (423)
...+.|||||.+||.++...+|..+|..|--.+.+.+.. ++.....+..|||.|.+..+|..|+..|||..|.. ..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 456699999999999999999999999997777776654 33223455799999999999999999999998853 33
Q ss_pred ceEeeeccccCCCCCCC---------------------------------------------------------------
Q 014513 95 QNFRLNWASFGIGEKRP--------------------------------------------------------------- 111 (423)
Q Consensus 95 ~~v~~~~a~~~~~~~~~--------------------------------------------------------------- 111 (423)
+.+.+..+......++.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 33333211110000000
Q ss_pred ------------C----CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHH
Q 014513 112 ------------D----AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRA 175 (423)
Q Consensus 112 ------------~----~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a 175 (423)
. .....+|||.||.++++|++|+..| +.|.....++|-.. .| --.+|++|.+.+.|..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~-~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLL-SRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDA 264 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHH-HhCCCceEEEEecC--CC--cceEeecHHHHHHHHHH
Confidence 0 0011369999999999999999999 89987776665322 12 23799999999999999
Q ss_pred HHhhCCcee
Q 014513 176 MTEMNGVFC 184 (423)
Q Consensus 176 ~~~~~g~~~ 184 (423)
+..+.|..+
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 999998876
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.9e-13 Score=99.54 Aligned_cols=65 Identities=32% Similarity=0.664 Sum_probs=60.2
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEE
Q 014513 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (423)
Q Consensus 236 l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~ 300 (423)
|||+|||+++++++|+++|+.||.|..+.+..+ +++|||+|.++++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999886 69999999999999999999999999999985
No 77
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=5e-13 Score=124.73 Aligned_cols=154 Identities=21% Similarity=0.335 Sum_probs=121.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecc
Q 014513 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (423)
Q Consensus 23 ~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a 102 (423)
.++|||+|||..+++++|.++|.+||.|..|.+..++.++.++|||||+|.++++|..|++.++|..|.++.+.+.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999998887777432
Q ss_pred --ccCCCCC---------------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEE
Q 014513 103 --SFGIGEK---------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVK 165 (423)
Q Consensus 103 --~~~~~~~---------------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~ 165 (423)
....... .........+++++++..++...+...| ..+|.+....+.............++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLF-KSRGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhc-cccccceeeeccCCCCCcccccccccc
Confidence 1111111 1122245679999999999999999999 899999777776665444444455555
Q ss_pred eCCHHHHHHHHH
Q 014513 166 FLDENERNRAMT 177 (423)
Q Consensus 166 f~~~~~a~~a~~ 177 (423)
+.....+.....
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 555555544444
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.49 E-value=1.3e-13 Score=115.63 Aligned_cols=75 Identities=29% Similarity=0.548 Sum_probs=71.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
...++|.|-||.+-+|.++|+.+|++||.|.+|.|+.+ +|||||.|.+..+|+.|+.+|+|.+|+|+.|+|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34689999999999999999999999999999999985 799999999999999999999999999999999999
Q ss_pred c
Q 014513 305 R 305 (423)
Q Consensus 305 ~ 305 (423)
+
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 8
No 79
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.6e-13 Score=118.12 Aligned_cols=82 Identities=27% Similarity=0.470 Sum_probs=79.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
.+++|-|.||+.++++++|+++| .+||.|..+.|.+|+.||.+||||||.|.+.++|.+||+.|||.-.++--|+|.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 67889999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 014513 195 TPK 197 (423)
Q Consensus 195 ~~~ 197 (423)
.|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 80
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=2.9e-13 Score=98.57 Aligned_cols=70 Identities=29% Similarity=0.629 Sum_probs=64.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 119 l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
|+|+|||+++++++|+++| +.+|.|..+++..++. ++++|+|||+|.++++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f-~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFF-SRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHC-TTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999 8999999999999987 99999999999999999999999999999999874
No 81
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=3.8e-13 Score=120.47 Aligned_cols=100 Identities=23% Similarity=0.404 Sum_probs=80.1
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
.+.+--++|+|.|||....|-||+..|.+||+|.+|+||-+. .-+|||+||+|++.++|++|.++|||+.++||.+
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI-- 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKI-- 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEE--
Confidence 345556889999999999999999999999999999999985 5589999999999999999999999999999655
Q ss_pred eeeccccCCCCCCCCCCCCceEEE
Q 014513 98 RLNWASFGIGEKRPDAGPEHSIFV 121 (423)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~l~v 121 (423)
+|+.+......++...-+....|+
T Consensus 167 EVn~ATarV~n~K~~v~p~~~g~~ 190 (376)
T KOG0125|consen 167 EVNNATARVHNKKKKVLPYPNGWK 190 (376)
T ss_pred EEeccchhhccCCcccCCCccccc
Confidence 455554444444444433333333
No 82
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.1e-13 Score=111.57 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=70.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecc
Q 014513 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (423)
Q Consensus 23 ~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a 102 (423)
.++|||+||+..+++.||+.+|..||++.+|+|-+++ .|||||||+++.+|..|+..|+|+.|.+..+.|++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5789999999999999999999999999999998864 79999999999999999999999999998888888665
Q ss_pred c
Q 014513 103 S 103 (423)
Q Consensus 103 ~ 103 (423)
.
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 4
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.4e-13 Score=117.46 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=71.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
.++|||+|||+.+++++|+++| +.||.|.+|+|+.++. ++|||||+|.++++|+.|+. |+|..+.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefF-S~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFF-SFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 4689999999999999999999 9999999999999853 57999999999999999996 99999999999999876
Q ss_pred CC
Q 014513 196 PK 197 (423)
Q Consensus 196 ~~ 197 (423)
.-
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 43
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=6.9e-13 Score=124.57 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=70.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC--CCcEEEEEeCCh--HHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--GRGCGFVQFAAR--ASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~--~~g~aFV~F~~~--~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
....+||||||++.+|+++|+.+|..||.|.+|.|++ +||||||+|.+. .++.+||..|||..+.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4468999999999999999999999999999999987 589999999987 78999999999999999999999998
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.3e-12 Score=90.52 Aligned_cols=55 Identities=31% Similarity=0.590 Sum_probs=52.1
Q ss_pred HHHHhhhcCCeEEEEEeCCC-cEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 250 LKQTFLHFGEIVNVKIPMGR-GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 250 L~~~F~~~G~I~~v~i~~~~-g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
|+++|++||+|.++.+.+.+ ++|||+|.+.++|++|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999999987 99999999999999999999999999999999986
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.1e-12 Score=116.10 Aligned_cols=84 Identities=25% Similarity=0.526 Sum_probs=79.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
.-+-++|||+-|+.+++|..|++.| +.||+|+.|+|++|+.||+++|||||+|+++.+...|.+..+|..|+++.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3568899999999999999999999 999999999999999999999999999999999999999999999999999997
Q ss_pred cccCC
Q 014513 193 AATPK 197 (423)
Q Consensus 193 ~a~~~ 197 (423)
.-...
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 75443
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=97.23 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=69.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC---CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~---~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
.++.|||.|||+++|.+++.++|.+||.|..|+|... +|.|||.|++..+|++|+..|.|..++++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3689999999999999999999999999999999764 7999999999999999999999999999999998755
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=1.9e-12 Score=94.15 Aligned_cols=68 Identities=47% Similarity=0.815 Sum_probs=64.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCC----cEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR----GCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 235 ~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~----g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
+|+|+|||..+++++|+++|.+||.|..+.+..++ ++|||+|.+.++|++|+..+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998865 999999999999999999999999999999874
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=2.1e-12 Score=113.06 Aligned_cols=73 Identities=30% Similarity=0.356 Sum_probs=67.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC---CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~---~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
...+|||+||++.+|+++|+++|+.||+|.+|.|.++ +++|||+|.++++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3589999999999999999999999999999999985 489999999999999998 599999999999998544
No 90
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.8e-12 Score=114.77 Aligned_cols=85 Identities=22% Similarity=0.449 Sum_probs=78.8
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...++=+||||+-|+++++|..|+..|+.||+|..|.+++++.||+++|||||+|+++.+...|.+..+|.+|.++.+.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred eeecc
Q 014513 98 RLNWA 102 (423)
Q Consensus 98 ~~~~a 102 (423)
-+...
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 66443
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.38 E-value=1.1e-12 Score=126.44 Aligned_cols=84 Identities=32% Similarity=0.555 Sum_probs=80.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
+.+||||||+++++++|.++| +..|.|.+++++.|+.||+++||||++|.+.+++.+|++.|||..+.||+|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 789999999999999999999 8999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccc
Q 014513 197 KKTTG 201 (423)
Q Consensus 197 ~~~~~ 201 (423)
.+...
T Consensus 98 ~~~~~ 102 (435)
T KOG0108|consen 98 RKNAE 102 (435)
T ss_pred cchhH
Confidence 65543
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=9.4e-13 Score=110.47 Aligned_cols=84 Identities=27% Similarity=0.481 Sum_probs=79.5
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
+-+.+...+|.|.||.+.++.++|+.+|++||.|-+|.|.+++.|+.++|||||-|....+|+.|+..|+|..+.|+++.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred Eeee
Q 014513 97 FRLN 100 (423)
Q Consensus 97 v~~~ 100 (423)
|.+.
T Consensus 87 Vq~a 90 (256)
T KOG4207|consen 87 VQMA 90 (256)
T ss_pred ehhh
Confidence 7663
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=7.3e-14 Score=114.74 Aligned_cols=85 Identities=26% Similarity=0.450 Sum_probs=78.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
..+.-|||||||.+.||.+|.-.| +.||+|++|.+++|+.||+|+||||+.|++..+...|+..|||..+.||.|+|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VF-SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVF-SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEe-eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 345679999999999999999999 9999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCc
Q 014513 194 ATPKKT 199 (423)
Q Consensus 194 a~~~~~ 199 (423)
...-+.
T Consensus 112 v~~Yk~ 117 (219)
T KOG0126|consen 112 VSNYKK 117 (219)
T ss_pred cccccC
Confidence 654433
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=2.7e-12 Score=120.64 Aligned_cols=80 Identities=21% Similarity=0.362 Sum_probs=73.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCH--HHHHHHHHhhCCceecCcceEE
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE--NERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~--~~a~~a~~~~~g~~~~g~~i~v 191 (423)
....+||||||++++++++|+..| +.||.|.+|.|+ +.|| ||||||+|.+. .++.+||..|||..+.|+.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravF-SeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIF-SPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345789999999999999999999 899999999999 4567 99999999987 7899999999999999999999
Q ss_pred ecccCCC
Q 014513 192 SAATPKK 198 (423)
Q Consensus 192 ~~a~~~~ 198 (423)
..|.+.-
T Consensus 83 NKAKP~Y 89 (759)
T PLN03213 83 EKAKEHY 89 (759)
T ss_pred eeccHHH
Confidence 9988753
No 95
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=7.8e-12 Score=121.14 Aligned_cols=180 Identities=15% Similarity=0.288 Sum_probs=138.1
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
..........++|++||...++.++++++..||++....++.+..+|.++||||.+|.++.-...|+..|||..+.++.+
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 33456667789999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eEeeeccccCCCCC-----------------CCCCCCCceEEEeCC------CCCCC----HHHHHHHHHhhCCCeeEEE
Q 014513 96 NFRLNWASFGIGEK-----------------RPDAGPEHSIFVGDL------APDVT----DYLLQETFRSQYPSVRGAK 148 (423)
Q Consensus 96 ~v~~~~a~~~~~~~-----------------~~~~~~~~~l~vgnL------p~~~t----~~~l~~~F~~~~g~v~~v~ 148 (423)
.+............ .....+...|...|+ -.+.. -|+++..+ ++||.|..|.
T Consensus 362 vvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~v~ 440 (500)
T KOG0120|consen 362 VVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRSVE 440 (500)
T ss_pred EeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeEEe
Confidence 77664433211111 111112233333332 11111 13455556 6899999999
Q ss_pred EeeCCC---CCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 149 VVTDPN---TGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 149 i~~~~~---tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
|.++-. ..-..|..||+|++.+++++|+++|+|..|.+|.+...+...
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 987722 234578899999999999999999999999999999887654
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.9e-13 Score=111.83 Aligned_cols=79 Identities=32% Similarity=0.625 Sum_probs=73.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
..++||||+|..++||.-|...|-+||.|.+|.++.+ ||||||+|.-.|+|..||..||+.+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4689999999999999999999999999999999874 8999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014513 306 KQDVT 310 (423)
Q Consensus 306 ~~~~~ 310 (423)
|....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 75444
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=6.4e-12 Score=109.97 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=70.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
...+|||+||++.+|+++|+++| +.||+|.+|+|++| ++.+|+|||+|.++++++.|+. |+|..|.+++|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefF-S~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFF-SHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHH-HhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 35789999999999999999999 99999999999998 4567899999999999999996 9999999999999876
Q ss_pred cC
Q 014513 195 TP 196 (423)
Q Consensus 195 ~~ 196 (423)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1e-11 Score=92.62 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=71.6
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
-+.++..+.|||+|||+.++.+++.++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|...|+|..+.++-+.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 3677888999999999999999999999999999999987754 5689999999999999999999999999997666
Q ss_pred Eee
Q 014513 97 FRL 99 (423)
Q Consensus 97 v~~ 99 (423)
+..
T Consensus 89 vly 91 (124)
T KOG0114|consen 89 VLY 91 (124)
T ss_pred EEe
Confidence 543
No 99
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=3.9e-13 Score=113.73 Aligned_cols=151 Identities=25% Similarity=0.364 Sum_probs=129.2
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
.+++..|||||.|+-..++|+-|.++|-+.|+|..|+|...+ ++..+ ||||+|+++-++.-|++.+||..+.+.++.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 456788999999999999999999999999999999888876 66666 9999999999999999999999999977665
Q ss_pred eeeccccCCCCCCCCCCCCceEEEeC----CCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHH
Q 014513 98 RLNWASFGIGEKRPDAGPEHSIFVGD----LAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERN 173 (423)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~l~vgn----Lp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~ 173 (423)
+ ++.|+ |...++++.+.+.| +.-++++.+++.++.. |+++.++|+++......-
T Consensus 82 ~--------------------~r~G~shapld~r~~~ei~~~v~-s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 82 T--------------------LRCGNSHAPLDERVTEEILYEVF-SQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred c--------------------cccCCCcchhhhhcchhhheeee-cccCCCCCcccccccc-CCccCccchhhhhhhcCc
Confidence 4 33444 55678889999999 8999999999999865 999999999999988888
Q ss_pred HHHHhhCCceecCcceEEe
Q 014513 174 RAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 174 ~a~~~~~g~~~~g~~i~v~ 192 (423)
.++....+....-+++.+.
T Consensus 140 ~~~~~y~~l~~~~~~~~~g 158 (267)
T KOG4454|consen 140 FALDLYQGLELFQKKVTIG 158 (267)
T ss_pred HHhhhhcccCcCCCCcccc
Confidence 8888777776655555543
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=7.5e-12 Score=90.58 Aligned_cols=70 Identities=33% Similarity=0.599 Sum_probs=64.4
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 28 IGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 28 V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
|+|||..+++++|+++|++||.|..+++..++.++.++++|||+|.+.++|.+|++.+++..+.++.+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999998878899999999999999999999999999888765443
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=1.5e-11 Score=89.26 Aligned_cols=72 Identities=39% Similarity=0.772 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 118 ~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
+|+|+|||..+++++|+++| +.||.|..+.+..++ +.++|+|||+|.+.++|++|+..+++..+.++++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~-~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELF-SKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHH-HhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999 899999999999886 7889999999999999999999999999999988763
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-12 Score=110.55 Aligned_cols=86 Identities=26% Similarity=0.537 Sum_probs=81.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
...++||||+|..++++.-|...| -+||.|.+|.+..|..++++|||+||+|.-.|+|..||..||+.++.||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAF-IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAF-IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhcc-ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 346789999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 014513 194 ATPKKTT 200 (423)
Q Consensus 194 a~~~~~~ 200 (423)
|.|.+..
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9887654
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=7.1e-12 Score=97.99 Aligned_cols=84 Identities=24% Similarity=0.412 Sum_probs=76.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
+-+.-.|+|.++.+.++|++|.+.|..||+|.++.+.-++.||..+|||+|+|.+.+.|++|+..+||..+.+ .++.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~--q~v~V 146 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG--QNVSV 146 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC--CceeE
Confidence 3355579999999999999999999999999999999999999999999999999999999999999999998 66777
Q ss_pred eccccC
Q 014513 100 NWASFG 105 (423)
Q Consensus 100 ~~a~~~ 105 (423)
.|+...
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 887543
No 104
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=112.43 Aligned_cols=177 Identities=15% Similarity=0.225 Sum_probs=128.9
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhc----cCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAH----TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~----~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~ 91 (423)
...+-+..-.|.+++||+++++.|+..+|.. .|..+.|.+++.. +|+..|-|||.|..+++|+.||.+ |...|.
T Consensus 154 ~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG 231 (508)
T KOG1365|consen 154 PFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIG 231 (508)
T ss_pred CCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHh
Confidence 3345566777999999999999999999953 2456778777765 899999999999999999999964 222222
Q ss_pred CccceEee----------e-cc--------ccCC-----CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCC-ee-
Q 014513 92 GTEQNFRL----------N-WA--------SFGI-----GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VR- 145 (423)
Q Consensus 92 ~~~~~v~~----------~-~a--------~~~~-----~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~-v~- 145 (423)
-+-+.+-. + .. .... ..-.+...+...|-+++||.+.+.++|.++| ..|.. |.
T Consensus 232 qRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Fl-gdFa~~i~f 310 (508)
T KOG1365|consen 232 QRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFL-GDFATDIRF 310 (508)
T ss_pred HHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHH-HHHhhhccc
Confidence 11111100 0 00 0000 0011222335679999999999999999999 77754 33
Q ss_pred -EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 146 -GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 146 -~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
.|.++.+. .|++.|-|||+|.++++|..|..+.+.+....|-|.|-.+..
T Consensus 311 ~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 311 QGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred ceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 37777775 499999999999999999999999998888889998876643
No 105
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=2.2e-13 Score=111.98 Aligned_cols=81 Identities=25% Similarity=0.486 Sum_probs=74.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
=+++--|||+|||+..+|-||.-+|++||+|++|.+++++.||+++||||+.|++..+...|+..|||..|.++.++|-.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999997665544
Q ss_pred e
Q 014513 100 N 100 (423)
Q Consensus 100 ~ 100 (423)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 3
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1.7e-11 Score=88.74 Aligned_cols=71 Identities=38% Similarity=0.749 Sum_probs=67.0
Q ss_pred EeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 121 VGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 121 vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
|+|||..+++++|+++| +.||.|..+.+..++.+++++|+|||+|.+.++|.+|++.+++..+.++.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999 899999999999998889999999999999999999999999999999988773
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.7e-11 Score=88.42 Aligned_cols=69 Identities=39% Similarity=0.776 Sum_probs=65.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 235 ~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|..|+..+++..++|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999875 69999999999999999999999999999999874
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=3.6e-13 Score=134.56 Aligned_cols=236 Identities=17% Similarity=0.172 Sum_probs=185.3
Q ss_pred CccEEEEcCCCCCCCHH-HHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 22 EVRTLWIGDLQYWFDEN-YLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~-~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
+.+...+.++.+...+. ..+..|..+|.|+.|++......-....+.++++....+++.++ ...+..+.++...+-+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 44557788887776555 56888999999999998773322223338899999999999999 45777777766555544
Q ss_pred ccccCCCCCCCC---CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 014513 101 WASFGIGEKRPD---AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (423)
Q Consensus 101 ~a~~~~~~~~~~---~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~ 177 (423)
-+.......+.. .....++||.||+..+.+++|...| ..+|.+..+.+....++++.+|+||++|..++++.+|+.
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhc-CccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 443221111111 1234579999999999999999999 899999988888777889999999999999999999998
Q ss_pred hhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhc
Q 014513 178 EMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHF 257 (423)
Q Consensus 178 ~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~ 257 (423)
...++.+. ..+|+|.|+|+..|.++|+.+|+.+
T Consensus 728 f~d~~~~g-----------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~ 760 (881)
T KOG0128|consen 728 FRDSCFFG-----------------------------------------------KISVAISGPPFQGTKEELKSLASKT 760 (881)
T ss_pred hhhhhhhh-----------------------------------------------hhhhheeCCCCCCchHHHHhhcccc
Confidence 54444432 2667999999999999999999999
Q ss_pred CCeEEEEEeC-----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 258 GEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 258 G~I~~v~i~~-----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
|.+.+..++. .+|-++|.|.++.++.+++....+..+..+.+.|..+.+
T Consensus 761 gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 761 GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999987765 369999999999999999998888778777777777654
No 109
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=110.71 Aligned_cols=81 Identities=31% Similarity=0.670 Sum_probs=73.5
Q ss_pred CCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCC-eEeCceEEEEEEc
Q 014513 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG-HMIGQQQVRISWG 304 (423)
Q Consensus 226 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g-~~i~g~~l~v~~a 304 (423)
.+..+...++|||++|-..+++.+|+++|.+||+|+++.+...++||||+|.+.++|++|.+++-. ..|+|++|.|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 344566789999999999999999999999999999999999999999999999999999887644 4599999999999
Q ss_pred cc
Q 014513 305 RK 306 (423)
Q Consensus 305 ~~ 306 (423)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 97
No 110
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=96.27 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=74.6
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v 301 (423)
........|||.++....|+++|.+.|..||+|+++.+..+ ||||.|+|.+.++|++|+.++||..|-|+.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 44567899999999999999999999999999999998764 699999999999999999999999999999999
Q ss_pred EEcccCCC
Q 014513 302 SWGRKQDV 309 (423)
Q Consensus 302 ~~a~~~~~ 309 (423)
.|+--+..
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99874443
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=6.9e-11 Score=113.52 Aligned_cols=161 Identities=25% Similarity=0.276 Sum_probs=109.7
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...-..++|+|-|||..+++++|+.+|+.||+|..|+.-++ .++.+||+|.+..+|++|++.|++..|.++.+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k- 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK- 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc-
Confidence 34667899999999999999999999999999999765444 579999999999999999999999999887665
Q ss_pred eee--------------ccccCC--CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcce
Q 014513 98 RLN--------------WASFGI--GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGY 161 (423)
Q Consensus 98 ~~~--------------~a~~~~--~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~ 161 (423)
+.- |+.+.. ....+...+ +.-.++.|++..+...+...| +.+|.+.. +.... -+-.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~-~~~~~g~l~P~~s~~~~~~~~-~~~~~~~~-~~~~~-----~~hq 215 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWP-RGQLFGMLSPTRSSILLEHIS-SVDGSSPG-RETPL-----LNHQ 215 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCc-CCcceeeeccchhhhhhhcch-hccCcccc-ccccc-----hhhh
Confidence 111 111100 011111112 222334499998887777777 78887776 33222 1115
Q ss_pred EEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 162 GFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 162 afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
-|++|.+..++..+...+ |..+.+....+..
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~ 246 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITF 246 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEe
Confidence 678888888886665533 6665555544433
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.8e-10 Score=109.84 Aligned_cols=164 Identities=23% Similarity=0.303 Sum_probs=110.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEee-CCCC--CCCcc---eEEEEeCCHHHHHHHHHhhCCceecC
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVT-DPNT--GRSKG---YGFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~-~~~t--g~~~G---~afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
..-+++||||+||++++|+.|...| ..||.+.- .-.. .... --++| |+|+.|+++..+..-+.++.- ..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F-~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASF-GQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred cccccceeecCCCccccHHHHHhhc-ccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 3356889999999999999999999 89997542 1111 1111 13567 999999999999988876543 23
Q ss_pred cceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhh-hcCCeEEEEE
Q 014513 187 RPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFL-HFGEIVNVKI 265 (423)
Q Consensus 187 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~I~~v~i 265 (423)
....+....+.-.... ....|.--.....-......-.+.+|||||+||.-++.++|..+|+ -||.|+.+-|
T Consensus 331 ~~~yf~vss~~~k~k~-------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI 403 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKE-------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI 403 (520)
T ss_pred cceEEEEecCcccccc-------eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe
Confidence 3333322222211110 0000100000000000112334579999999999999999999998 8999999999
Q ss_pred eCC------CcEEEEEeCChHHHHHHHHH
Q 014513 266 PMG------RGCGFVQFAARASAEEAILR 288 (423)
Q Consensus 266 ~~~------~g~aFV~F~~~~~A~~Al~~ 288 (423)
..| +|-|-|+|.+..+-.+||.+
T Consensus 404 DtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 404 DTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 876 69999999999999999975
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.2e-10 Score=109.18 Aligned_cols=155 Identities=21% Similarity=0.335 Sum_probs=118.0
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEe-cCC--CCCCcc---eEEEEEcCHHHHHHHHHHcCCCCCC
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIR-NKI--TGQPEG---YGFVEFVSHAAAERVLQTYNGTPMP 91 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~-~~~--~g~~~g---~afVeF~~~~~A~~al~~l~g~~~~ 91 (423)
....=++.|||++||++++|+.|...|..||.+. |.... ... --.++| |+|+.|+++.++..-+....- .
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 5566789999999999999999999999999864 43332 111 123556 999999999999988865432 1
Q ss_pred CccceEee-----------------eccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC
Q 014513 92 GTEQNFRL-----------------NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN 154 (423)
Q Consensus 92 ~~~~~v~~-----------------~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~ 154 (423)
....-+++ .-+.+- ......-.+.++||||+||.-++.++|..+|...||.|..+-|-+|+.
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k 408 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK 408 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc
Confidence 11122212 111111 112233446889999999999999999999966999999999999988
Q ss_pred CCCCcceEEEEeCCHHHHHHHHH
Q 014513 155 TGRSKGYGFVKFLDENERNRAMT 177 (423)
Q Consensus 155 tg~~~G~afV~f~~~~~a~~a~~ 177 (423)
-+-++|-|-|+|.+...-.+||.
T Consensus 409 ~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 409 LKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCCCCCcceeeecccHHHHHHHh
Confidence 89999999999999999999997
No 114
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.25 E-value=8.8e-12 Score=108.04 Aligned_cols=170 Identities=27% Similarity=0.401 Sum_probs=132.8
Q ss_pred cEEEEcCCCCCCCHHH-H--HHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 24 RTLWIGDLQYWFDENY-L--SSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~-L--~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
-.+++.++-..+..+- | ...|+.+-.+...++.+++ .+...+++|+.|+....-.++-..-+++++.... |++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~--VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPP--VRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcc--eeec
Confidence 3455666666655554 3 6888888888888888887 6778899999999888777777555666666543 4443
Q ss_pred ccccCCCCC-CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh
Q 014513 101 WASFGIGEK-RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (423)
Q Consensus 101 ~a~~~~~~~-~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~ 179 (423)
-.+.-.... ..-.....+||.|.|.-+++++.|...| .+|......++++|+.||+++||+||.|.+..++.+|+++|
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf-~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAF-KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHH-HhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 222111111 1123456789999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCceecCcceEEecccCC
Q 014513 180 NGVFCSTRPMRISAATPK 197 (423)
Q Consensus 180 ~g~~~~g~~i~v~~a~~~ 197 (423)
+|+++++|+|.+..+.-+
T Consensus 253 ~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred cccccccchhHhhhhhHH
Confidence 999999999998765443
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=7.2e-11 Score=85.70 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=55.6
Q ss_pred HHHHHHHHHh----hCCCeeEEE-EeeCCCC--CCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 130 DYLLQETFRS----QYPSVRGAK-VVTDPNT--GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 130 ~~~l~~~F~~----~~g~v~~v~-i~~~~~t--g~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
+++|+++| + .||.|.++. |+.++.+ ++++|||||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 56788888 7 999999995 7777777 999999999999999999999999999999999876
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.20 E-value=4.5e-10 Score=109.89 Aligned_cols=182 Identities=13% Similarity=0.081 Sum_probs=126.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCC
Q 014513 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 118 ~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~ 197 (423)
.+-+.+.+++.+..+++.+|...+ |..+.|..+...+-..|-++|+|....++.+|++ -|...+-.|.+.+..+...
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred eeeecccccccccchhhhhcCccc--ccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCcc
Confidence 455678999999999999994443 5666666665544448999999999999999998 4556667788888766543
Q ss_pred Ccccch---hhh--hhhcccC-----CCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEE-EEEe
Q 014513 198 KTTGFQ---QQY--AAVKATY-----PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN-VKIP 266 (423)
Q Consensus 198 ~~~~~~---~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~-v~i~ 266 (423)
...... ... ....... +..+...+.+. .........+|||..||..+++.++.++|+..-.|++ |.|.
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~-vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQN-VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCC-CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 322110 000 0000000 00011111111 1122344689999999999999999999998888877 6554
Q ss_pred C---C--CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 267 M---G--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 267 ~---~--~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
. + ++.|||.|.+++++.+|+..-+.+.++.+.|+|.-
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 3 2 68999999999999999888787889999999963
No 117
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=3.8e-11 Score=115.85 Aligned_cols=76 Identities=30% Similarity=0.642 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
+.|||||||++++|++|.++|+..|.|.+++++.|+.||+++||||++|.++++|.+|++.|||.++.++.+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 8999999999999999999999999999999999999999999999999999999999999999999996555433
No 118
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=2.1e-10 Score=83.71 Aligned_cols=74 Identities=41% Similarity=0.759 Sum_probs=68.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 118 ~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
+|+|+|||+.+++++|+++| +.+|.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~-~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELF-SKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHH-HhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999 88999999999998764 7899999999999999999999999999999998753
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.19 E-value=5.6e-10 Score=109.27 Aligned_cols=174 Identities=14% Similarity=0.089 Sum_probs=121.1
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
+.-..+.+.+-+.+.+...+++|++++|..- .+.++.|..+...+...|-++|+|....++++|++. |...+..+.+.
T Consensus 305 pqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q 382 (944)
T KOG4307|consen 305 PQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQ 382 (944)
T ss_pred CcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhhccee
Confidence 3445677789999999999999999999543 355566665554455578899999999999999964 54444443333
Q ss_pred Eee----eccc------c----------------CCCCC------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCe
Q 014513 97 FRL----NWAS------F----------------GIGEK------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144 (423)
Q Consensus 97 v~~----~~a~------~----------------~~~~~------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v 144 (423)
+.. .|.. . ..... +...+....|||-+||..+++..+..+| +..-.|
T Consensus 383 ~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f-~~~~~V 461 (944)
T KOG4307|consen 383 TGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKF-MGAAAV 461 (944)
T ss_pred ecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhh-hhhhhh
Confidence 322 0100 0 00000 0111235679999999999999999999 666667
Q ss_pred eE-EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 145 RG-AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 145 ~~-v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
++ |.|.+-+ +++-++-|||.|..++++.+|...-+.+++..|.|+|...
T Consensus 462 ed~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 462 EDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred hheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 77 5555554 5888999999999988888887766666667777777443
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=5.7e-11 Score=117.62 Aligned_cols=82 Identities=28% Similarity=0.614 Sum_probs=77.0
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
.+.++|||||+|+.++++.||.++|+.||.|.+|.+...++||||+..++.+|.+|+.+|....+.++.|+|.||..+..
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999997666
Q ss_pred CC
Q 014513 310 TG 311 (423)
Q Consensus 310 ~~ 311 (423)
+.
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 55
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=3.4e-10 Score=82.17 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=53.6
Q ss_pred HHHHHHHhh----ccCCeeEEE-EEecCCC--CCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 37 ENYLSSCFA----HTGEVVSIK-IIRNKIT--GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 37 e~~L~~~F~----~~G~v~~v~-i~~~~~~--g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
+++|+++|+ +||.|.+|. |+.++.+ +.++|+|||+|.+.++|.+|++.|||..+.++.+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888898 999999995 6666656 899999999999999999999999999999976553
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1.1e-10 Score=117.38 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=140.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
+...+++||+|||+..+++.+|+..| ..+|.|.+|.|.+-+. ++-.-|+||.|.+...+-+|..++.+..|....+++
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af-~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAF-DESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhh-hhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 34467899999999999999999999 8999999999977644 445569999999999999999989998886666555
Q ss_pred ecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcE
Q 014513 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGC 271 (423)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~ 271 (423)
....+ .....+.+++++|...+....|...|..||.|..|.+....-|
T Consensus 446 glG~~--------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~y 493 (975)
T KOG0112|consen 446 GLGQP--------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPY 493 (975)
T ss_pred ccccc--------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcc
Confidence 44433 1234688999999999999999999999999999999999999
Q ss_pred EEEEeCChHHHHHHHHHhCCeEeCc--eEEEEEEcccC
Q 014513 272 GFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQ 307 (423)
Q Consensus 272 aFV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~a~~~ 307 (423)
++|.|.+...|+.|...|.|..|++ ++++|.||...
T Consensus 494 ayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 494 AYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 9999999999999999999999975 68999999844
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.08 E-value=2.7e-10 Score=105.12 Aligned_cols=176 Identities=23% Similarity=0.293 Sum_probs=138.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
....++|++++.+.+.+.++..++ ...|.+....+........++|++.+.|+..+.+..|+.......+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~-~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFS-SEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccc-hhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 456789999999999999888888 8889888888888777889999999999999999999984444566666666655
Q ss_pred ccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----
Q 014513 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----- 268 (423)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~----- 268 (423)
............. ........+..+|++|++++++++|+.+|..+|.|..++++..
T Consensus 165 ~~~~~~~~~n~~~-------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 165 NTRRGLRPKNKLS-------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGD 225 (285)
T ss_pred cccccccccchhc-------------------ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccc
Confidence 5444311100000 0112223344459999999999999999999999999999873
Q ss_pred -CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCC
Q 014513 269 -RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (423)
Q Consensus 269 -~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 310 (423)
+|+|+|.|.+..++..++.. +...++++++++....+....
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 69999999999999999988 778899999999988865443
No 124
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=7.1e-10 Score=76.69 Aligned_cols=56 Identities=29% Similarity=0.607 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 133 LQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 133 l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
|.++| ++||+|..+.+..+. +++|||+|.+.++|+.|++.+||..+.|++|+|.+|
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHh-CCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67889 999999999997764 689999999999999999999999999999999875
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.04 E-value=2.8e-10 Score=105.08 Aligned_cols=177 Identities=23% Similarity=0.320 Sum_probs=141.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC-CCCCccceEee
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT-PMPGTEQNFRL 99 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~-~~~~~~~~v~~ 99 (423)
...++++++++.+.+.++++..++..+|.+..+.......+..+++++.+.|...+.+..||.. .+. .+.++....-+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 3578899999999999999999999999988888888777889999999999999999999954 544 44333322222
Q ss_pred eccccC---CCCCCCCCCCCceEE-EeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHH
Q 014513 100 NWASFG---IGEKRPDAGPEHSIF-VGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRA 175 (423)
Q Consensus 100 ~~a~~~---~~~~~~~~~~~~~l~-vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a 175 (423)
+..... ....+.......+++ |++|+..+++++|..+| ..+|.|..+++..++.++.++||++|.|.....+..+
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF-VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhc-cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 222111 011122333444555 99999999999999999 8999999999999999999999999999999999999
Q ss_pred HHhhCCceecCcceEEecccCCCcc
Q 014513 176 MTEMNGVFCSTRPMRISAATPKKTT 200 (423)
Q Consensus 176 ~~~~~g~~~~g~~i~v~~a~~~~~~ 200 (423)
+.. ....+.++++.+....+....
T Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 244 LND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhc-ccCcccCcccccccCCCCccc
Confidence 986 888899999999888776443
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=1.5e-11 Score=123.16 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=130.9
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
.++..++||.||++.+.+++|...|..+|.+..+.|...+..++.+|+||++|..++++.+|+...+++.+ +
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g------- 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G------- 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h-------
Confidence 35667899999999999999999999999988888776666899999999999999999999965444333 2
Q ss_pred eccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh
Q 014513 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (423)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~ 179 (423)
..+|+|.|+|+..|.++++..+ +..|.+.+++++..+. |+++|.++|.|.++.++.+++...
T Consensus 736 ----------------K~~v~i~g~pf~gt~e~~k~l~-~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 ----------------KISVAISGPPFQGTKEELKSLA-SKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred ----------------hhhhheeCCCCCCchHHHHhhc-cccCCccccchhhhhc-cccccceeccCCCcchhhhhcccc
Confidence 2459999999999999999999 9999999999888865 999999999999999999999888
Q ss_pred CCceecCcceEEecccC
Q 014513 180 NGVFCSTRPMRISAATP 196 (423)
Q Consensus 180 ~g~~~~g~~i~v~~a~~ 196 (423)
+...+..+.+.+..+++
T Consensus 798 d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhhcCccccccCC
Confidence 88877777777766555
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.00 E-value=3.9e-10 Score=97.99 Aligned_cols=164 Identities=25% Similarity=0.369 Sum_probs=127.0
Q ss_pred ceEEEeCCCCCCCHHH-H--HHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 117 HSIFVGDLAPDVTDYL-L--QETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~-l--~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
...+++++-..+..+- | -..| +.+......+++++.. +.-++++|+.|.....-.++-.+-+++.+..+++++..
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f-~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVF-SEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccCCCCCCcchhhh-ccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 3456666655555443 2 5566 6777777778888754 67789999999999988888888888888888777765
Q ss_pred ccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEE------eC
Q 014513 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI------PM 267 (423)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i------~~ 267 (423)
.+.-.... ..+.+.+..+||.|.|..+++++-|-..|.+|-.-...++ .+
T Consensus 175 gtswedPs------------------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgK 230 (290)
T KOG0226|consen 175 GTSWEDPS------------------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGK 230 (290)
T ss_pred ccccCCcc------------------------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccc
Confidence 54433221 2345566799999999999999999999999965444444 44
Q ss_pred CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 268 GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 268 ~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
++||+||.|.++.++.+|+..|+|+.++.++|++..+..
T Consensus 231 SkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 689999999999999999999999999999999876553
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-09 Score=99.01 Aligned_cols=83 Identities=27% Similarity=0.546 Sum_probs=75.5
Q ss_pred CCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCC------cEEEEEeCChHHHHHHHHHhCCeEeCceEE
Q 014513 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARASAEEAILRMQGHMIGQQQV 299 (423)
Q Consensus 226 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~------g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l 299 (423)
..+..++...|||--|.+-+|++||.-+|+.||+|++|.|.+++ .||||+|.+.+++++|.-.|++..|+.++|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 34556778999999999999999999999999999999999864 799999999999999999999999999999
Q ss_pred EEEEcccCC
Q 014513 300 RISWGRKQD 308 (423)
Q Consensus 300 ~v~~a~~~~ 308 (423)
+|.|+....
T Consensus 312 HVDFSQSVs 320 (479)
T KOG0415|consen 312 HVDFSQSVS 320 (479)
T ss_pred Eeehhhhhh
Confidence 999987543
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.3e-09 Score=98.86 Aligned_cols=84 Identities=27% Similarity=0.465 Sum_probs=79.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
..++.+.|||-.|.+-+++++|.-+| +.||.|.+|.|++|+.||.+.-||||+|.+.+++++|.-+|++..|..+.|+|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 45678999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 014513 192 SAATP 196 (423)
Q Consensus 192 ~~a~~ 196 (423)
.++.+
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 88754
No 130
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.93 E-value=2e-09 Score=106.92 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=81.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecc
Q 014513 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (423)
Q Consensus 23 ~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a 102 (423)
+|||||+.|+..++|.||.++|+.||.|++|+++.+ +++|||.+....+|.+||+.|++..+.. ..|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~--k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVAD--KTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccc--eeeEEeee
Confidence 689999999999999999999999999999998886 4999999999999999999999888877 67888898
Q ss_pred ccCCCCCC-CCCCCCceEEEeCCCCCCCHHHHHHHH
Q 014513 103 SFGIGEKR-PDAGPEHSIFVGDLAPDVTDYLLQETF 137 (423)
Q Consensus 103 ~~~~~~~~-~~~~~~~~l~vgnLp~~~t~~~l~~~F 137 (423)
-- .+.+. -..--...+=|.-||++.-..++..+.
T Consensus 493 ~g-~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 493 VG-KGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred cc-CCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 52 22221 011112234566678776656644444
No 131
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.92 E-value=9.5e-09 Score=98.81 Aligned_cols=73 Identities=34% Similarity=0.507 Sum_probs=64.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC----C--CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----G--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~----~--~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
...|||+|||.+++..+|+++|+.||.|+...|.. + .+||||+|.+.++++.||++- -..|++++|.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 34599999999999999999999999999977764 2 289999999999999999975 5669999999997664
No 132
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.89 E-value=4.1e-09 Score=89.21 Aligned_cols=79 Identities=25% Similarity=0.346 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHT-GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~-G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
..-.++|..+|.-..+..|..+|.++ |.|..+++-|++.||.++|||||||++++.|+-|-++||+-.|.+.-+.+.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34458999999999999999999998 77888888899999999999999999999999999999999998876655553
No 133
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=3.9e-10 Score=95.78 Aligned_cols=136 Identities=29% Similarity=0.344 Sum_probs=112.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
..+..++|||+|+...++++.|.|+| -..|+|..|.|..++. +..| ||||.|.++..+.-|+..+||..+.++++.+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~Elf-iqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELF-IQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHh-hccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 34557899999999999999999999 7999999999988865 6777 9999999999999999999999998877766
Q ss_pred ecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEec----CCCCCCHHHHHHHhhhcCCeEEEEEeC
Q 014513 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGN----LDPNVTEEELKQTFLHFGEIVNVKIPM 267 (423)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----L~~~~te~~L~~~F~~~G~I~~v~i~~ 267 (423)
.. +.|+ |...++++.+...|+.-|.+..+++..
T Consensus 82 ~~-------------------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~ 118 (267)
T KOG4454|consen 82 TL-------------------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPT 118 (267)
T ss_pred cc-------------------------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccc
Confidence 43 3444 677789999999999999999999876
Q ss_pred -----CCcEEEEEeCChHHHHHHHHHhCCeE
Q 014513 268 -----GRGCGFVQFAARASAEEAILRMQGHM 293 (423)
Q Consensus 268 -----~~g~aFV~F~~~~~A~~Al~~l~g~~ 293 (423)
++.++||.+-..-+.-.++....+..
T Consensus 119 ~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 119 DNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 36788888766555555665555443
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=8.3e-09 Score=99.03 Aligned_cols=76 Identities=20% Similarity=0.407 Sum_probs=70.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
...+.|||.+|...+...||+.+|++||+|+-.+|..+ ++||||++++.++|.++|..||.++|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999999999874 799999999999999999999999999999999998
Q ss_pred cc
Q 014513 305 RK 306 (423)
Q Consensus 305 ~~ 306 (423)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 84
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=4.1e-09 Score=101.54 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=122.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|+|-|||..+++++|.+.| +.||+|++|+.- -..+|.+||+|.|..+|++|++++++..+.|+.+..
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f-~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIF-GAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHH-Hhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 35567899999999999999999999 999999997553 345789999999999999999999999999998883
Q ss_pred ecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcE
Q 014513 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGC 271 (423)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~ 271 (423)
........ ..+... .-......+.....+..-. ...+| +.|++..+..-++.+|.-+|.+..-..+.-+..
T Consensus 145 ~~~~~~~~-~~~~~~------~~~~~~~~p~a~s~pgg~~-~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq 215 (549)
T KOG4660|consen 145 PGGARRAM-GLQSGT------SFLNHFGSPLANSPPGGWP-RGQLF-GMLSPTRSSILLEHISSVDGSSPGRETPLLNHQ 215 (549)
T ss_pred CCcccccc-hhcccc------hhhhhccchhhcCCCCCCc-CCcce-eeeccchhhhhhhcchhccCccccccccchhhh
Confidence 33222211 111110 0000011111111111111 22233 339998888888888888888876222222347
Q ss_pred EEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 272 GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 272 aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
-|+.|.+..++..+...+ |..+.+....+.+..+
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 788999999997777755 7888888888888775
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=2e-09 Score=108.60 Aligned_cols=166 Identities=19% Similarity=0.348 Sum_probs=139.3
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
+-...++|+++||+..+++.+|+..|..+|.|.+|.|-+-. .+....|+||.|.+...+-.|...+.+..|....+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 45678999999999999999999999999999999987764 45666799999999999999999999988877665554
Q ss_pred eeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHh
Q 014513 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (423)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~ 178 (423)
+-. ....+.+.+|+++|.+.+....|...| ..||.|..|.+-.. .-|++|.|.+...+..|++.
T Consensus 447 lG~---------~kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 447 LGQ---------PKSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccc---------cccccceeeccCCCCCCChHHHHHHHh-hccCcceeeecccC------CcceeeecccCccchhhHHH
Confidence 322 145567889999999999999999999 89999998766332 33999999999999999999
Q ss_pred hCCceec--CcceEEecccCCCccc
Q 014513 179 MNGVFCS--TRPMRISAATPKKTTG 201 (423)
Q Consensus 179 ~~g~~~~--g~~i~v~~a~~~~~~~ 201 (423)
|.|..++ .+.++|.++.+.....
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCCh
Confidence 9999995 4678888877654443
No 137
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=86.02 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=79.5
Q ss_pred CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 108 ~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
...+......-+++..+|.-..+.++..+|+..+|.|..+++.+++.||.|||||||+|.+++.|+-|-+.||+-.+.++
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 34455666778999999999999999999954448899999999999999999999999999999999999999999999
Q ss_pred ceEEecccCC
Q 014513 188 PMRISAATPK 197 (423)
Q Consensus 188 ~i~v~~a~~~ 197 (423)
-|.|..-.+.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9998776554
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.70 E-value=4.7e-08 Score=93.96 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=76.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
...+.|||.+|+..+...+|+.+| ++||.|...+|+++..+--.+.|+||++.+.++|.+||..|+...+.|+.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 345789999999999999999999 9999999999999987777899999999999999999999999999999999988
Q ss_pred ccC
Q 014513 194 ATP 196 (423)
Q Consensus 194 a~~ 196 (423)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 764
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=8.5e-08 Score=87.29 Aligned_cols=82 Identities=29% Similarity=0.480 Sum_probs=68.9
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHc-CCCCCCCc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY-NGTPMPGT 93 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l-~g~~~~~~ 93 (423)
-.|-.....++|||++|-..++|.+|+++|-+||+|++|.+...+ ++|||+|.+.++|+.|.+.+ |...|.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G- 292 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVING- 292 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecc-
Confidence 445567788999999998899999999999999999999998865 79999999999999999765 5445555
Q ss_pred cceEeeecccc
Q 014513 94 EQNFRLNWASF 104 (423)
Q Consensus 94 ~~~v~~~~a~~ 104 (423)
.++.+.|...
T Consensus 293 -~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 -FRLKIKWGRP 302 (377)
T ss_pred -eEEEEEeCCC
Confidence 6666679865
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.66 E-value=8.6e-08 Score=94.59 Aligned_cols=83 Identities=40% Similarity=0.717 Sum_probs=75.9
Q ss_pred CCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC---------CCcEEEEEeCChHHHHHHHHHhCCeEeCc
Q 014513 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM---------GRGCGFVQFAARASAEEAILRMQGHMIGQ 296 (423)
Q Consensus 226 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~---------~~g~aFV~F~~~~~A~~Al~~l~g~~i~g 296 (423)
-+..++..+.|||+||++.++++.|...|..||+|..++|+. .+.||||-|-+..+|++|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 345677789999999999999999999999999999999975 36899999999999999999999999999
Q ss_pred eEEEEEEcccCC
Q 014513 297 QQVRISWGRKQD 308 (423)
Q Consensus 297 ~~l~v~~a~~~~ 308 (423)
..+++-|++...
T Consensus 247 ~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 247 YEMKLGWGKAVP 258 (877)
T ss_pred eeeeeccccccc
Confidence 999999998543
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.49 E-value=8.4e-07 Score=67.62 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=64.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhc--CCeEEEEEeC------CCcEEEEEeCChHHHHHHHHHhCCeEeC----ceEEEE
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHF--GEIVNVKIPM------GRGCGFVQFAARASAEEAILRMQGHMIG----QQQVRI 301 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~--G~I~~v~i~~------~~g~aFV~F~~~~~A~~Al~~l~g~~i~----g~~l~v 301 (423)
+||.|+|+|...|.++|.+++... |....+.++. +.|||||.|.+++.|.+-.+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999998643 5666666665 3799999999999999999999999874 678999
Q ss_pred EEcccCC
Q 014513 302 SWGRKQD 308 (423)
Q Consensus 302 ~~a~~~~ 308 (423)
.||+-|+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9998554
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.49 E-value=5.4e-07 Score=80.35 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=71.9
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
+....+|+|.|||+.+.++||+++|..||.+..+-+..++ +|.+.|.|-|.|...++|..|++.++|..+.|+.+.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3444679999999999999999999999999999888887 999999999999999999999999999999998866655
Q ss_pred e
Q 014513 100 N 100 (423)
Q Consensus 100 ~ 100 (423)
.
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 3
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.47 E-value=1.4e-06 Score=66.38 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC--ccceEee
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHT--GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--TEQNFRL 99 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~--G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~--~~~~v~~ 99 (423)
+||+|+|||...+.++|.+++... |...-+-++-|..++.+.|||||.|.++++|.+..+.++|..+.. ....+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888653 556667777787889999999999999999999999999999964 3455666
Q ss_pred eccc
Q 014513 100 NWAS 103 (423)
Q Consensus 100 ~~a~ 103 (423)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.44 E-value=7.4e-07 Score=79.46 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=75.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
+.+|.|.|||..+++++|+++| ..||.+..+-+-.++. |++.|.|=|.|...++|.+|++.+++..++|++|.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF-~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELF-AEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHH-HHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 4679999999999999999999 8999999888888864 9999999999999999999999999999999999998876
Q ss_pred CCCcc
Q 014513 196 PKKTT 200 (423)
Q Consensus 196 ~~~~~ 200 (423)
+....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 55443
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=3.8e-07 Score=81.56 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=76.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
......++||+|+.+.+|.+++..+| +.||.|..+.|.+|+.++.+|||+||+|.+.+.++.++. |++..+.++.+.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf-~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHF-ESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhhee-eccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 34456789999999999999999999 899999999999999999999999999999999999999 9999999999988
Q ss_pred ecccCC
Q 014513 192 SAATPK 197 (423)
Q Consensus 192 ~~a~~~ 197 (423)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 765443
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.39 E-value=8e-07 Score=69.43 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=47.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCC-----eEeCceEEEEEE
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG-----HMIGQQQVRISW 303 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g-----~~i~g~~l~v~~ 303 (423)
+.|+|.+++..++.++|++.|++||.|..|.+..+...|+|.|.+.++|++|+..+.- ..|.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 6789999999999999999999999999999999999999999999999999988743 346776666653
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=4.8e-08 Score=90.79 Aligned_cols=151 Identities=22% Similarity=0.396 Sum_probs=122.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCce-ecCcceEEeccc
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRPMRISAAT 195 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~-~~g~~i~v~~a~ 195 (423)
+.+|++||.+.++..+|...|...--....-.++ -.||+||...+...|.+|++.++|+. +.|+.+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999993221112222222 24799999999999999999999865 689999998887
Q ss_pred CCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC-CCcE--E
Q 014513 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-GRGC--G 272 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~-~~g~--a 272 (423)
+++.. ++++-|.|+|+..-|+.|..+..+||.++.|.... +.-. .
T Consensus 75 ~kkqr--------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavv 122 (584)
T KOG2193|consen 75 PKKQR--------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVV 122 (584)
T ss_pred hHHHH--------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHH
Confidence 76654 35578999999999999999999999999987754 3222 3
Q ss_pred EEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 273 FVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 273 FV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
=|+|.+.+.++.||..++|..+....++|.|-..
T Consensus 123 nvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 123 NVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 3689999999999999999999999999998663
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.38 E-value=1.8e-06 Score=62.46 Aligned_cols=69 Identities=25% Similarity=0.423 Sum_probs=47.6
Q ss_pred ceEEEecCCCCCCHHHH----HHHhhhc-CCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 234 TTIFVGNLDPNVTEEEL----KQTFLHF-GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L----~~~F~~~-G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
+.|+|.|||.+.+...| ++++..+ |+|..|. .+.|+|.|.+.+.|.+|.+.|+|..+-|+.|.|++...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 56899999999887654 5555555 5777773 79999999999999999999999999999999999863
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.36 E-value=6.4e-07 Score=80.09 Aligned_cols=81 Identities=21% Similarity=0.561 Sum_probs=73.6
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
..-+.+.+||+|+...++.+++...|+-||.+..|.|..++.++.++||+||+|.+.+.++++|+ |||..+.+....+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44577889999999999999999999999999999999999999999999999999999999997 99999999766655
Q ss_pred ee
Q 014513 99 LN 100 (423)
Q Consensus 99 ~~ 100 (423)
..
T Consensus 176 ~~ 177 (231)
T KOG4209|consen 176 LK 177 (231)
T ss_pred ee
Confidence 43
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.20 E-value=2.9e-06 Score=81.84 Aligned_cols=76 Identities=24% Similarity=0.444 Sum_probs=65.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
.+|||.|||+++++.+|.++| +.||.|+...|..-...++...||||+|.+.+++..|+.+ +...++++++.|+.-
T Consensus 289 ~~i~V~nlP~da~~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 459999999999999999999 9999999988876432344458999999999999999984 578889999999654
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.19 E-value=3e-06 Score=84.05 Aligned_cols=82 Identities=23% Similarity=0.529 Sum_probs=73.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCC---CCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDP---NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~---~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.+..+.|||+||++.++++.|...| ..||+|.+++|+.-+ ...+.+-|+||-|-+..+|++|++.|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tf-GrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTF-GRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHh-cccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3456789999999999999999999 999999999998653 234678899999999999999999999999999999
Q ss_pred EEeccc
Q 014513 190 RISAAT 195 (423)
Q Consensus 190 ~v~~a~ 195 (423)
++-|+.
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999874
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.02 E-value=2.7e-05 Score=56.50 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=46.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHh----hccC-CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 24 RTLWIGDLQYWFDENYLSSCF----AHTG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F----~~~G-~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
..|+|.|||.+.+...|+.-+ .-+| .|.+| ..+.|+|.|.+.+.|.+|.+.|+|..+.|+.+.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 359999999999988876554 4565 57666 23679999999999999999999999999777665
Q ss_pred ee
Q 014513 99 LN 100 (423)
Q Consensus 99 ~~ 100 (423)
..
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 54
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.01 E-value=1.6e-05 Score=53.72 Aligned_cols=52 Identities=33% Similarity=0.615 Sum_probs=45.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHH
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAI 286 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al 286 (423)
+.|-|.|.+.+.. +.+..+|..||+|+.+.+.......+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5678889887665 455668999999999999988999999999999999985
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.96 E-value=9.3e-06 Score=75.22 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=117.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCC---CCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNT---GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~t---g~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
..|-|.||.+.+|.++++.+| ...|+|.+++|+.+... ....-.|||.|.|...+..|.. |....+-++.|.|-+
T Consensus 8 ~vIqvanispsat~dqm~tlF-g~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLF-GNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHH-hhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 368999999999999999999 89999999999874321 2345689999999999999987 666666677666655
Q ss_pred ccCCCcccchhhh--h---------hhcccCCCCC------------CCCC---CccCCCCCCCCcceEEEecCCCCCCH
Q 014513 194 ATPKKTTGFQQQY--A---------AVKATYPVAA------------YTTP---VQVFPADNDITNTTIFVGNLDPNVTE 247 (423)
Q Consensus 194 a~~~~~~~~~~~~--~---------~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~l~V~nL~~~~te 247 (423)
+............ . +.....+... ...| ++...........+++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 4433222211000 0 0000000000 0000 00000011123368999999999999
Q ss_pred HHHHHHhhhcCCeEEEEEeC--CCcEEEEEeCChHHHHHHHHHhCCeEe
Q 014513 248 EELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMI 294 (423)
Q Consensus 248 ~~L~~~F~~~G~I~~v~i~~--~~g~aFV~F~~~~~A~~Al~~l~g~~i 294 (423)
.++.+.|..+|.|.+..+.. +.-+|-|.|....+...|+.. +|.++
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~ 213 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRER 213 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhh
Confidence 99999999999998877754 356777999888888888764 55554
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.81 E-value=2.7e-06 Score=79.42 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=115.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC-CCCCccceEeeecc
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT-PMPGTEQNFRLNWA 102 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~-~~~~~~~~v~~~~a 102 (423)
..+||+||.+.++.+||+++|.....-.+=.++. ..||+||...+..-|.+|++.++|+ .+.|+.+.+.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3589999999999999999997652222222222 2489999999999999999999986 46665555443332
Q ss_pred ccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEe-eCCCCCCCcceEEEEeCCHHHHHHHHHhhCC
Q 014513 103 SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVV-TDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (423)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~-~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g 181 (423)
....++++-+.|+|+....+.|..++ ..||.|..|..+ ++..| -..-|+|...+.++.|+.+++|
T Consensus 76 ---------kkqrsrk~Qirnippql~wevld~Ll-~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 76 ---------KKQRSRKIQIRNIPPQLQWEVLDSLL-AQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred ---------HHHHhhhhhHhcCCHHHHHHHHHHHH-hccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcc
Confidence 22235668999999999999999999 899999998663 33322 1233788999999999999999
Q ss_pred ceecCcceEEecccC
Q 014513 182 VFCSTRPMRISAATP 196 (423)
Q Consensus 182 ~~~~g~~i~v~~a~~ 196 (423)
..+.+..+.+.+...
T Consensus 142 ~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 142 PQLENQHLKVGYIPD 156 (584)
T ss_pred hHhhhhhhhcccCch
Confidence 999888888876543
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.76 E-value=3.8e-05 Score=70.18 Aligned_cols=76 Identities=20% Similarity=0.405 Sum_probs=67.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGE--VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~--v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
.....+||+||-|+++++||.+.+...|. +.++|++.++.+|.++|||+|-.-+.++.++.++.|-.+.|.|..-+
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 33445899999999999999999998885 88999999999999999999999999999999998888888885433
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.74 E-value=9.4e-06 Score=75.20 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=114.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT---GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
.|-|.||.+.++.+++..+|.-.|.|..++++.+..+ ......|||.|.+...+..|- .|.++.|-++.+.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 6999999999999999999999999999999885422 234467999999999988776 788888877665554411
Q ss_pred ccc-----------------------CCCCC----------------CCCC----------CCCceEEEeCCCCCCCHHH
Q 014513 102 ASF-----------------------GIGEK----------------RPDA----------GPEHSIFVGDLAPDVTDYL 132 (423)
Q Consensus 102 a~~-----------------------~~~~~----------------~~~~----------~~~~~l~vgnLp~~~t~~~ 132 (423)
+.. +.... .+.. +..++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 100 00000 0000 0125689999999999999
Q ss_pred HHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec
Q 014513 133 LQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 133 l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
+.+.| ..+|+|....+-- +-..-+|-++|........|+. ++|..+.
T Consensus 168 ~~e~f-~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 168 SGESF-ERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhh-hhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999 8999988765532 4445588899999999999988 7777765
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.69 E-value=0.0001 Score=67.14 Aligned_cols=73 Identities=18% Similarity=0.487 Sum_probs=62.5
Q ss_pred cceEEEecCCCCCCHHH----H--HHHhhhcCCeEEEEEeCC-------CcE--EEEEeCChHHHHHHHHHhCCeEeCce
Q 014513 233 NTTIFVGNLDPNVTEEE----L--KQTFLHFGEIVNVKIPMG-------RGC--GFVQFAARASAEEAILRMQGHMIGQQ 297 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~----L--~~~F~~~G~I~~v~i~~~-------~g~--aFV~F~~~~~A~~Al~~l~g~~i~g~ 297 (423)
..-+||-+|++.+-+|+ | .++|.+||+|..|.|-+. .+. .+|+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46689999999887776 2 468999999999999762 122 39999999999999999999999999
Q ss_pred EEEEEEcc
Q 014513 298 QVRISWGR 305 (423)
Q Consensus 298 ~l~v~~a~ 305 (423)
.|+..|+.
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99999987
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.68 E-value=6.1e-05 Score=69.57 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=77.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE--------EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--------AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~--------v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~ 184 (423)
.....+|||-+||..+++.+|.++| ..++.|.. |.|.+|++|+++||-|.|.|.|...|..|+..++++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f-~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFF-LQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHH-hhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3445689999999999999999999 89988753 78889999999999999999999999999999999999
Q ss_pred cCcceEEecccCCCc
Q 014513 185 STRPMRISAATPKKT 199 (423)
Q Consensus 185 ~g~~i~v~~a~~~~~ 199 (423)
.+..|+|..+..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999988876553
No 160
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.66 E-value=3.6e-05 Score=67.61 Aligned_cols=72 Identities=24% Similarity=0.430 Sum_probs=62.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC--------CCCcc----eEEEEEcCHHHHHHHHHHcCCCCC
Q 014513 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT--------GQPEG----YGFVEFVSHAAAERVLQTYNGTPM 90 (423)
Q Consensus 23 ~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~--------g~~~g----~afVeF~~~~~A~~al~~l~g~~~ 90 (423)
+=.||+++||+.++..-|+++|+.||.|-.|-+-+...+ |.+.. -++|||.+...|.++...|||++|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 346999999999999999999999999999999887655 33332 288999999999999999999999
Q ss_pred CCcc
Q 014513 91 PGTE 94 (423)
Q Consensus 91 ~~~~ 94 (423)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.61 E-value=0.00031 Score=54.00 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=54.2
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEE-------------EeCCCcEEEEEeCChHHHHHHHHHhCCeEeCce-E
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK-------------IPMGRGCGFVQFAARASAEEAILRMQGHMIGQQ-Q 298 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~-------------i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~-~ 298 (423)
.+.|.|-+.|+. ....|.++|++||.|.+.. ++......-|+|+++.+|.+||.. ||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 466888898887 4667778899999998885 666788999999999999999985 99999885 5
Q ss_pred EEEEEcc
Q 014513 299 VRISWGR 305 (423)
Q Consensus 299 l~v~~a~ 305 (423)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 6677764
No 162
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.50 E-value=0.00024 Score=55.54 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=38.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g 87 (423)
+.|.|.+++..++.++|++.|+.+|.|.-|.+.+.. ..|+|-|.+.++|++|++.+.-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHh
Confidence 468899999999999999999999988888775532 5799999999999999986643
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.37 E-value=0.00044 Score=46.67 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHH
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al 82 (423)
+.|-|.+.|++..+ +|..+|..||+|..+.+.. ...+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56889999987664 4555888999999988752 2468999999999999986
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.36 E-value=0.00038 Score=65.64 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=56.1
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-------------------CcEEEEEeCChHHHHHHHHHh
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-------------------RGCGFVQFAARASAEEAILRM 289 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-------------------~g~aFV~F~~~~~A~~Al~~l 289 (423)
.....++|.+-|||.+-.-+.|.++|+.+|.|..|+|.+- +-||+|+|.+.+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3456899999999999888999999999999999999752 468999999999999999988
Q ss_pred CC
Q 014513 290 QG 291 (423)
Q Consensus 290 ~g 291 (423)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 54
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.35 E-value=0.00048 Score=61.75 Aligned_cols=59 Identities=27% Similarity=0.326 Sum_probs=50.9
Q ss_pred HHHHHHHhhhcCCeEEEEEeCC-------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 247 EEELKQTFLHFGEIVNVKIPMG-------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 247 e~~L~~~F~~~G~I~~v~i~~~-------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
++++++.+++||.|..|.|... .--.||+|...++|.+|+..|||+.|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3578888999999999988753 2458999999999999999999999999999887643
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.32 E-value=0.0026 Score=56.30 Aligned_cols=89 Identities=19% Similarity=0.327 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCCCCccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCC
Q 014513 77 AAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156 (423)
Q Consensus 77 ~A~~al~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg 156 (423)
-|..|...|++....++.+.++... ...|+|.||...++.+.+.+.| +.||+|....++.|- .+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~--------------~a~l~V~nl~~~~sndll~~~f-~~fg~~e~av~~vD~-r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM--------------HAELYVVNLMQGASNDLLEQAF-RRFGPIERAVAKVDD-RG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec--------------cceEEEEecchhhhhHHHHHhh-hhcCccchheeeecc-cc
Confidence 3666777789999999877766533 2459999999999999999999 899999998888874 48
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCC
Q 014513 157 RSKGYGFVKFLDENERNRAMTEMNG 181 (423)
Q Consensus 157 ~~~G~afV~f~~~~~a~~a~~~~~g 181 (423)
++.+-++|+|...-.+.+|.+.++-
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhcc
Confidence 9999999999999999999987643
No 167
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.31 E-value=0.00064 Score=62.98 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=70.7
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV--------SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~ 90 (423)
.....-+|||-+||..+++++|.++|.++|.|. .|+|.+++.|+.+++-|.|.|.+...|+.|+.-+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 355566799999999999999999999998764 577888999999999999999999999999999999999
Q ss_pred CCccceEeeecc
Q 014513 91 PGTEQNFRLNWA 102 (423)
Q Consensus 91 ~~~~~~v~~~~a 102 (423)
.+. ++++..+
T Consensus 142 ~gn--~ikvs~a 151 (351)
T KOG1995|consen 142 CGN--TIKVSLA 151 (351)
T ss_pred cCC--Cchhhhh
Confidence 994 4444444
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.30 E-value=0.0019 Score=52.76 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=54.0
Q ss_pred CCCCCcceEEEecCC-----C-CCCH---HHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceE
Q 014513 228 DNDITNTTIFVGNLD-----P-NVTE---EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~-----~-~~te---~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~ 298 (423)
..+++.-+|.|.=+. . ...+ .+|.+.|..||+|+-+++.- +.-+|+|.+-++|-+|+. ++|..|+|+.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 344566788887655 1 2322 36777899999999998874 689999999999999987 7999999999
Q ss_pred EEEEEcc
Q 014513 299 VRISWGR 305 (423)
Q Consensus 299 l~v~~a~ 305 (423)
|+|+...
T Consensus 99 l~i~LKt 105 (146)
T PF08952_consen 99 LKIRLKT 105 (146)
T ss_dssp EEEEE--
T ss_pred EEEEeCC
Confidence 9999755
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.19 E-value=0.0002 Score=63.05 Aligned_cols=66 Identities=18% Similarity=0.391 Sum_probs=58.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCC------------------cEEEEEeCChHHHHHHHHHhCCeE
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------------------GCGFVQFAARASAEEAILRMQGHM 293 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~------------------g~aFV~F~~~~~A~~Al~~l~g~~ 293 (423)
..-.||+++||+...-..|+++|++||.|-.|.+-+.. .-|.|+|.+...|++....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 35789999999999999999999999999999996521 247899999999999999999999
Q ss_pred eCce
Q 014513 294 IGQQ 297 (423)
Q Consensus 294 i~g~ 297 (423)
|+|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9886
No 170
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.15 E-value=0.00094 Score=58.98 Aligned_cols=95 Identities=26% Similarity=0.374 Sum_probs=76.9
Q ss_pred HHHHHHHhhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHH
Q 014513 171 ERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250 (423)
Q Consensus 171 ~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L 250 (423)
-|+.|-.+|++....++.++|.++.. ..|+|.||..-++.+.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------------------a~l~V~nl~~~~sndll 48 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-------------------------------------AELYVVNLMQGASNDLL 48 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-------------------------------------ceEEEEecchhhhhHHH
Confidence 46667777999999999999988754 55799999999999999
Q ss_pred HHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeE----eCceEEEEE
Q 014513 251 KQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHM----IGQQQVRIS 302 (423)
Q Consensus 251 ~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~----i~g~~l~v~ 302 (423)
.+.|+.||.|....+..+ .+-++|.|...-.|.+|+..+.-.- ..++++-|.
T Consensus 49 ~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 49 EQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred HHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 999999999988766553 4789999999999999999985333 344444444
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0019 Score=63.18 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=58.9
Q ss_pred CcceEEEecCCCCCCH------HHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeC-ceEE
Q 014513 232 TNTTIFVGNLDPNVTE------EELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIG-QQQV 299 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te------~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~-g~~l 299 (423)
-...|+|.|+|---.. .-|..+|+++|+|+.+.++.+ +|+.|++|.+..+|+.|++.|||+.|+ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3578999999864322 235667999999999999963 799999999999999999999999975 6677
Q ss_pred EEEE
Q 014513 300 RISW 303 (423)
Q Consensus 300 ~v~~ 303 (423)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 7753
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.13 E-value=0.0011 Score=60.53 Aligned_cols=82 Identities=18% Similarity=0.364 Sum_probs=63.9
Q ss_pred CceEEEeCCCCCCCHHH------HHHHHHhhCCCeeEEEEeeCCCC-CCCcce--EEEEeCCHHHHHHHHHhhCCceecC
Q 014513 116 EHSIFVGDLAPDVTDYL------LQETFRSQYPSVRGAKVVTDPNT-GRSKGY--GFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~------l~~~F~~~~g~v~~v~i~~~~~t-g~~~G~--afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
.+-+||-+|++.+..|+ -.++| .+||.|..|.|-+.... ....+. .||+|.+.++|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyF-GQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYF-GQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhh-hhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 34589999999988776 24678 89999998877654311 112222 4899999999999999999999999
Q ss_pred cceEEecccCCC
Q 014513 187 RPMRISAATPKK 198 (423)
Q Consensus 187 ~~i~v~~a~~~~ 198 (423)
|.|+..+.+.+-
T Consensus 193 r~lkatYGTTKY 204 (480)
T COG5175 193 RVLKATYGTTKY 204 (480)
T ss_pred ceEeeecCchHH
Confidence 999998876653
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.09 E-value=0.0005 Score=64.89 Aligned_cols=69 Identities=25% Similarity=0.298 Sum_probs=57.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec---CC--CCCC--------cceEEEEEcCHHHHHHHHHHcCCC
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRN---KI--TGQP--------EGYGFVEFVSHAAAERVLQTYNGT 88 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~---~~--~g~~--------~g~afVeF~~~~~A~~al~~l~g~ 88 (423)
.+|+|.+.|||.+-.-+-|.++|+.+|.|.+|+|+.. .. .+.+ +-+|+|||...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 7999999999999888999999999999999999876 22 2222 457999999999999999877654
Q ss_pred CC
Q 014513 89 PM 90 (423)
Q Consensus 89 ~~ 90 (423)
..
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 33
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.08 E-value=0.00025 Score=62.69 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=50.4
Q ss_pred HHHHHHhh-hcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 248 EELKQTFL-HFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 248 ~~L~~~F~-~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
++|...|+ +||+|+.+.|..+ +|-++|.|...++|++|++.||+..++|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555565 8999999988764 6899999999999999999999999999999988765
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.97 E-value=0.00075 Score=61.91 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=66.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g--~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
...+|||||-|.+|+++|.+.+ ...| .+.++++..++..|.+||||+|...++....+.++-|-.+.+.|..-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~-~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKAL-QSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHH-HhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3569999999999999999999 4554 477888889998999999999999999999999998888888776555543
Q ss_pred c
Q 014513 194 A 194 (423)
Q Consensus 194 a 194 (423)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0014 Score=63.91 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=60.1
Q ss_pred CccEEEEcCCCCCC--CH----HHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 22 EVRTLWIGDLQYWF--DE----NYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 22 ~~r~l~V~nLp~~~--~e----~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
....|.|.|+|--- .- .-|.++|+++|+++.+.++.+.. |.++||.|++|.+..+|+.|++.|||..+.-+ +
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn-H 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN-H 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc-c
Confidence 44568999998532 22 23568999999999999888874 45999999999999999999999999988754 4
Q ss_pred eEee
Q 014513 96 NFRL 99 (423)
Q Consensus 96 ~v~~ 99 (423)
++.+
T Consensus 135 tf~v 138 (698)
T KOG2314|consen 135 TFFV 138 (698)
T ss_pred eEEe
Confidence 4444
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.68 E-value=0.0016 Score=63.92 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhh-hcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEe---CceEEEEEE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFL-HFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI---GQQQVRISW 303 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i---~g~~l~v~~ 303 (423)
.....+..|+|.||-.-+|.-+|+.++. ..|.|+.+.|.+-|..|||.|.+.++|...+.+|||..+ +.+.|.+.|
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 3556678999999999999999999998 556777777766688999999999999999999999885 788999999
Q ss_pred ccc
Q 014513 304 GRK 306 (423)
Q Consensus 304 a~~ 306 (423)
+..
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 884
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.60 E-value=0.0012 Score=58.52 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=53.6
Q ss_pred HHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 131 ~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
+++...|..+||+|+.++|-.+. .-.-+|-+||.|..+++|++|+..||+..+.|++|......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 46666664599999999776653 24678999999999999999999999999999999987753
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.45 E-value=0.015 Score=44.76 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=51.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEe-eCC------CCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVV-TDP------NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~-~~~------~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~ 188 (423)
++.|.|-+.|+. ....|.++| ++||.|.+..-. ++. .........-|+|.++.+|.+||. .||..+.|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F-~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHF-SSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHH-HCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHH-HhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 456888899988 667788899 899999877411 110 001234588999999999999998 7999998764
Q ss_pred e-EEecc
Q 014513 189 M-RISAA 194 (423)
Q Consensus 189 i-~v~~a 194 (423)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45555
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.40 E-value=0.0079 Score=49.19 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=45.2
Q ss_pred HHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecc
Q 014513 39 YLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (423)
Q Consensus 39 ~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a 102 (423)
+|.+.|+.||.+.-|+++.+. -+|+|.+-++|-+|+ .++|.++.|+.++++++..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 577889999999888887654 899999999999999 6899999998888887433
No 181
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.26 E-value=0.015 Score=50.19 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=50.1
Q ss_pred CHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhC--CeEeCceEEEEEEcccC
Q 014513 246 TEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ--GHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 246 te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~--g~~i~g~~l~v~~a~~~ 307 (423)
..+.|+++|..|+.+..+...++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 357899999999999999999999999999999999999999999 99999999999999643
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.12 E-value=0.035 Score=40.58 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=43.7
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g 87 (423)
+......+|+ .|..+...||.++|+.||.|. |..+.+ ..|||...+.+.|..|+..++-
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3444556676 999999999999999999974 555555 4699999999999999988763
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.92 E-value=0.041 Score=44.41 Aligned_cols=75 Identities=29% Similarity=0.379 Sum_probs=59.8
Q ss_pred CCCCcceEEEecCCCCC-CHHHHHH---HhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 229 NDITNTTIFVGNLDPNV-TEEELKQ---TFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~-te~~L~~---~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.+++..+|.|.-|..++ ..+||+. .++.||+|.+|... ++..|.|.|.|..+|=+|+.+++. ..-|..+.++|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 45667889998777664 3455555 46889999998876 789999999999999999999875 667888888874
Q ss_pred c
Q 014513 305 R 305 (423)
Q Consensus 305 ~ 305 (423)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.74 E-value=0.031 Score=54.85 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=59.5
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHH-------cCCC
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAH--TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT-------YNGT 88 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~--~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~-------l~g~ 88 (423)
..+...|.|.|+.||..+..|+|+.+|.. +-++.+|.+-.+. + =||+|++..+|+.|.+. +.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 34567788999999999999999999966 6789999987764 2 49999999999999864 4567
Q ss_pred CCCCccceEe
Q 014513 89 PMPGTEQNFR 98 (423)
Q Consensus 89 ~~~~~~~~v~ 98 (423)
.|..+...|.
T Consensus 243 pImARIKain 252 (684)
T KOG2591|consen 243 PIMARIKAIN 252 (684)
T ss_pred chhhhhhhhh
Confidence 7766555544
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.73 E-value=0.067 Score=37.05 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=44.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcc----CCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHc
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHT----GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~----G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l 85 (423)
.|.|+++. ..+.+||+.+|..| + ...|+.+-+. .|=|-|.+.+.|.+||..|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 58999986 58999999999999 5 4578888875 5889999999999999754
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.70 E-value=0.11 Score=40.79 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=51.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
+.+..+-+...|+.++-++|..+.+.+- .|..++|+++. ..++-.+++.|.+.++|....+.+||+.+..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344455555555666667776666654 37788888865 2345569999999999999999999999865
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.70 E-value=0.03 Score=50.56 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=47.3
Q ss_pred HHHHHHHhhccCCeeEEEEEecCCCCCC-cceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 37 ENYLSSCFAHTGEVVSIKIIRNKITGQP-EGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 37 e~~L~~~F~~~G~v~~v~i~~~~~~g~~-~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
+.+++.-+++||.|..|.|......-.. .--.||+|...++|.+|+-.|||..|.|+.+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 3456788899999999999877522211 23489999999999999999999999996543
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.61 E-value=0.036 Score=54.41 Aligned_cols=69 Identities=9% Similarity=0.206 Sum_probs=57.4
Q ss_pred cceEEEecCCCCCCHHHHHHHhh--hcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCe--EeCceEEEEE
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFL--HFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH--MIGQQQVRIS 302 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~--~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~--~i~g~~l~v~ 302 (423)
.|.|.++-||..+..|+++.+|+ ...++++|.+..+ .-.||+|.+..||+.|.+.|... +|-|++|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 58899999999999999999996 4788999988764 45799999999999999988643 3777766544
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.44 E-value=0.0086 Score=57.51 Aligned_cols=75 Identities=23% Similarity=0.408 Sum_probs=62.3
Q ss_pred CcceEEEecCCCCC-CHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 232 TNTTIFVGNLDPNV-TEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 232 ~~~~l~V~nL~~~~-te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
..+.|-+.-.++.. |.++|..+|.+||+|..|.+..+.--|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34555566566553 668999999999999999998877889999999999988765 5899999999999997753
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.96 E-value=0.026 Score=48.60 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=50.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEEecCCCCCC--cceEEEEEcCHHHHHHHHHHcCCCCCCC-
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAH-TGEV---VSIKIIRNKITGQP--EGYGFVEFVSHAAAERVLQTYNGTPMPG- 92 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~-~G~v---~~v~i~~~~~~g~~--~g~afVeF~~~~~A~~al~~l~g~~~~~- 92 (423)
..+...|.|++||+..+|+++.+.++. ++.. ..+.-......-.. ..-|||.|.+.+++......++|..|..
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345568999999999999999887766 5554 23332222212221 2349999999999999999999987743
Q ss_pred --ccceEeeecccc
Q 014513 93 --TEQNFRLNWASF 104 (423)
Q Consensus 93 --~~~~v~~~~a~~ 104 (423)
......+.+|-+
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 233344455544
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.82 E-value=0.22 Score=34.47 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=42.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhc---CCeEEEEEeCCCcEEEEEeCChHHHHHHHHHh
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHF---GEIVNVKIPMGRGCGFVQFAARASAEEAILRM 289 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~---G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l 289 (423)
..+|+|.|++ +++.++|+.+|..| .....|.-.. -..|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWId-DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWID-DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEec-CCcEEEEECCHHHHHHHHHcC
Confidence 4689999995 58899999999998 1233344333 356778899999999999865
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.69 E-value=0.011 Score=54.77 Aligned_cols=74 Identities=15% Similarity=0.314 Sum_probs=61.6
Q ss_pred cceEEEecCCCCCCHHHHHH---HhhhcCCeEEEEEeCCC---------cEEEEEeCChHHHHHHHHHhCCeEeCceEEE
Q 014513 233 NTTIFVGNLDPNVTEEELKQ---TFLHFGEIVNVKIPMGR---------GCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~---~F~~~G~I~~v~i~~~~---------g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~ 300 (423)
..-+||-+|+..+.++.+.+ .|.+||.|..|.+.++. .-++|+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 45678889998876665544 68999999999887632 3489999999999999999999999999999
Q ss_pred EEEccc
Q 014513 301 ISWGRK 306 (423)
Q Consensus 301 v~~a~~ 306 (423)
.+++..
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 888773
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.59 E-value=0.12 Score=44.41 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=51.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhh-cCCe---EEEEEeCC--------CcEEEEEeCChHHHHHHHHHhCCeEe-Cc--
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLH-FGEI---VNVKIPMG--------RGCGFVQFAARASAEEAILRMQGHMI-GQ-- 296 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~-~G~I---~~v~i~~~--------~g~aFV~F~~~~~A~~Al~~l~g~~i-~g-- 296 (423)
...+|.|++||+++|++++.+.+++ ++.. ..+.-..+ -.-|+|.|.+.+++......++|+.+ +.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3579999999999999999998887 6666 33431111 25799999999999999999999885 22
Q ss_pred --eEEEEEEcccCC
Q 014513 297 --QQVRISWGRKQD 308 (423)
Q Consensus 297 --~~l~v~~a~~~~ 308 (423)
.+..|.+|.-+.
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 356677777443
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.39 E-value=0.33 Score=35.62 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=43.6
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhC
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~ 290 (423)
....+|+ .|...-..||.++|++||.|.---| +-..|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhc
Confidence 4666776 8999999999999999999975555 46899999999999999998885
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.14 E-value=0.62 Score=36.60 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=47.7
Q ss_pred ceEEEeCCCCC-CCHHHHHHHHHhhC-CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec
Q 014513 117 HSIFVGDLAPD-VTDYLLQETFRSQY-PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 117 ~~l~vgnLp~~-~t~~~l~~~F~~~~-g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
..+.+--.|+. ++.++|..+. +.+ ..|..++|++|.. .++-.+.++|.+.++|.......||+.++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~-~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFG-APFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhh-hcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44555445555 4555666555 444 4577889998843 35667889999999999999999999885
No 196
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=0.12 Score=47.07 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=57.1
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCce-EEEEEEcccC
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQ-QVRISWGRKQ 307 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~-~l~v~~a~~~ 307 (423)
..=|-|-+.++.- -..|..+|+++|.|++......-.+-.|.|.++-+|.+||.. ||+.|+|. .|-|+-...+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 3445566776643 456778899999999998887778999999999999999986 89999876 4556654443
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.00 E-value=0.38 Score=46.41 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=58.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
+++.|.|=.+|..++-.||..++..+- .|.+++|+++.. .++-.++|.|.+.++|....+.+||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378899999999999999999887664 489999999542 233459999999999999999999999875
No 198
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.93 E-value=0.052 Score=53.76 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAH-TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~-~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
.-.+.+..|+|.||---.|.-.|+.++.+ .|.|++.+|=+ -+..|||.|.+.++|.+....|||..|+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 34567888999999888899999999995 45677775433 34679999999999999999999999864
No 199
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.27 Score=48.78 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=67.3
Q ss_pred CcCCccEEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEEecCC----------CCC--------------------
Q 014513 19 TLEEVRTLWIGDLQYW-FDENYLSSCFAHT----GEVVSIKIIRNKI----------TGQ-------------------- 63 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~-~~e~~L~~~F~~~----G~v~~v~i~~~~~----------~g~-------------------- 63 (423)
-...+++|-|.||.|+ +.-+||..+|+.| |.|.+|+|..+.- +|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3567899999999997 7999999999887 5799999975431 232
Q ss_pred -----------------CcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 64 -----------------PEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 64 -----------------~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
...||+|+|.+.+.|.++.+.++|..+......+-+.+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12479999999999999999999999988776665544
No 200
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.14 E-value=0.054 Score=55.84 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=64.2
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeE--eCceEEEEEEcccCCC
Q 014513 236 IFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHM--IGQQQVRISWGRKQDV 309 (423)
Q Consensus 236 l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~--i~g~~l~v~~a~~~~~ 309 (423)
..+.|.+-..+-.-|..+|++||.|.++...++-..|.|.|.+.+.|..|+.+++|+. .-|-+.+|.+|+.-+.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 4455566667788899999999999999999999999999999999999999999998 4688999999995443
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.83 E-value=0.17 Score=37.77 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHhhCCc--eecCcceEEec--ccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEE
Q 014513 162 GFVKFLDENERNRAMTEMNGV--FCSTRPMRISA--ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237 (423)
Q Consensus 162 afV~f~~~~~a~~a~~~~~g~--~~~g~~i~v~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (423)
|+|+|.++.-|++.++ +..+ .+.+..+.|.. .........+ -......++|.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-----------------------v~~~vs~rtVl 56 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-----------------------VFSGVSKRTVL 56 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEE-----------------------EEEcccCCEEE
Confidence 6799999999999997 3332 34555555533 2222211111 12334578999
Q ss_pred EecCCCCCCHHHHHHHhh
Q 014513 238 VGNLDPNVTEEELKQTFL 255 (423)
Q Consensus 238 V~nL~~~~te~~L~~~F~ 255 (423)
|.|||...++++|++..+
T Consensus 57 vsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 57 VSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EeCCCCCCChhhheeeEE
Confidence 999999999999999754
No 202
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.71 E-value=0.33 Score=39.38 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=46.9
Q ss_pred cCCccEEEEcCCCCCC----CHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 20 LEEVRTLWIGDLQYWF----DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~----~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
..+..||.|+=|...+ +-..|...++.||+|.+|..+ .+-.|.|.|++..+|.+|+..+.. ..+|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 4466778887666554 333455667889999999643 345799999999999999987654 3444
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.91 E-value=0.91 Score=43.90 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
+++.|+|-.+|..++--+|..|.....-.|.+++|++|.. -.+-...|+|.+.++|.....++||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3788999999999999999999965566799999999754 234468899999999999999999998753
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.47 E-value=0.17 Score=51.13 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCce
Q 014513 218 YTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQ 297 (423)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~ 297 (423)
+..|.++..+. .++..++||+|+...+..+-++.+....|-|.++...+ |||..|..+..+.+|+..++-..++|.
T Consensus 26 ~~~p~qp~~~~-~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 26 YVVPIQPVFQP-LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cccCCcccccC-CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 34444443333 34568999999999999999999999999999887764 999999999999999999998889998
Q ss_pred EEEEEEc
Q 014513 298 QVRISWG 304 (423)
Q Consensus 298 ~l~v~~a 304 (423)
.+.+...
T Consensus 102 kl~~~~d 108 (668)
T KOG2253|consen 102 KLIENVD 108 (668)
T ss_pred hhhccch
Confidence 8777653
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.43 E-value=0.12 Score=48.05 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=63.1
Q ss_pred CceEEEeCCCCCCCHHHHH---HHHHhhCCCeeEEEEeeCCC-CCCCcc--eEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 116 EHSIFVGDLAPDVTDYLLQ---ETFRSQYPSVRGAKVVTDPN-TGRSKG--YGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~---~~F~~~~g~v~~v~i~~~~~-tg~~~G--~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.+-+||-+|+.....+.+. +.| ..||.|..|.+..++. ...+-+ -++|+|..+++|.+||...+|....++.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyf-gqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYF-GQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccc-cccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3558889999887666554 467 6888999998888763 111111 28899999999999999999999999998
Q ss_pred EEecccCCCc
Q 014513 190 RISAATPKKT 199 (423)
Q Consensus 190 ~v~~a~~~~~ 199 (423)
+....+.+-.
T Consensus 156 ka~~gttkyc 165 (327)
T KOG2068|consen 156 KASLGTTKYC 165 (327)
T ss_pred HHhhCCCcch
Confidence 8777766543
No 206
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.25 E-value=3.6 Score=37.77 Aligned_cols=159 Identities=14% Similarity=0.194 Sum_probs=98.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCC-------CCCCcceEEEEEcCHHHHHHHH----HHcCC--C
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKI-------TGQPEGYGFVEFVSHAAAERVL----QTYNG--T 88 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~-------~g~~~g~afVeF~~~~~A~~al----~~l~g--~ 88 (423)
.+|.|.+.|+..+++--.+...|.+||+|++|.++.+.. .-+......+.|-+.+.+-... +.|+- +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999998761 1233457899999999876543 33332 3
Q ss_pred CCCCccceEeeeccccCCCC-------------------CCCCCCCCceEEEeCCCCCCCHHHHHHHHH--hhCCC----
Q 014513 89 PMPGTEQNFRLNWASFGIGE-------------------KRPDAGPEHSIFVGDLAPDVTDYLLQETFR--SQYPS---- 143 (423)
Q Consensus 89 ~~~~~~~~v~~~~a~~~~~~-------------------~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~--~~~g~---- 143 (423)
.+....+++.+..-.+.... .-...+.+++|.|.--.+-.+++.+...+. ..-+.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 34444444443221111110 111233466777754333324444443330 11222
Q ss_pred eeEEEEeeCCC--CCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 144 VRGAKVVTDPN--TGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 144 v~~v~i~~~~~--tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
+++|.++.... ..-++-||.++|-+...|-..+.-+.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 56677765432 23568899999999999998887554
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.62 E-value=0.25 Score=47.87 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=65.5
Q ss_pred CCCCCCCCCcCCccEEEEcCCCCCC-CHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC
Q 014513 11 YHQHHHPMTLEEVRTLWIGDLQYWF-DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP 89 (423)
Q Consensus 11 ~~~~~~~~~~~~~r~l~V~nLp~~~-~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~ 89 (423)
.+.+.......+.+.|-+.-.|... +-++|...|.+||.|.+|-|-.+ .-.|.|+|.+..+|-+|. ...+..
T Consensus 360 rG~gv~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~av 432 (526)
T KOG2135|consen 360 RGRGVPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAV 432 (526)
T ss_pred cCCCCCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccce
Confidence 3444445566677788888888775 67889999999999999976443 356999999999998888 458888
Q ss_pred CCCccceEeeeccccCC
Q 014513 90 MPGTEQNFRLNWASFGI 106 (423)
Q Consensus 90 ~~~~~~~v~~~~a~~~~ 106 (423)
|.++ .+++.|-..+.
T Consensus 433 lnnr--~iKl~whnps~ 447 (526)
T KOG2135|consen 433 LNNR--FIKLFWHNPSP 447 (526)
T ss_pred ecCc--eeEEEEecCCc
Confidence 8884 55666665433
No 208
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.40 E-value=0.23 Score=37.11 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=46.0
Q ss_pred EEEEEcCHHHHHHHHHHcC-CCCCCCccceEeeeccccCCCCCC--CCCCCCceEEEeCCCCCCCHHHHHHHH
Q 014513 68 GFVEFVSHAAAERVLQTYN-GTPMPGTEQNFRLNWASFGIGEKR--PDAGPEHSIFVGDLAPDVTDYLLQETF 137 (423)
Q Consensus 68 afVeF~~~~~A~~al~~l~-g~~~~~~~~~v~~~~a~~~~~~~~--~~~~~~~~l~vgnLp~~~t~~~l~~~F 137 (423)
|+|+|.++.-|++.++.-. ...+....+.+++..-......+- ....+.++|.|.|||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999996422 123444445555433322221111 123357889999999999999998877
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.14 E-value=0.4 Score=34.74 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHhhhcCC-----eEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 243 PNVTEEELKQTFLHFGE-----IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 243 ~~~te~~L~~~F~~~G~-----I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
..++..+|..++..-+. |-.|.|. ..|.||+-... .|.+++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788899999877754 5556665 57889888554 788899999999999999999865
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.05 E-value=1.1 Score=31.62 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 34 WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 34 ~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
.++-+||+..+..|+- .+|..++ | || ||.|.+.++|++|....+|+.+....
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEE
Confidence 4678899999999964 3344454 3 44 89999999999999999998876543
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.88 E-value=0.26 Score=51.10 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=60.1
Q ss_pred EEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccccC
Q 014513 27 WIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFG 105 (423)
Q Consensus 27 ~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~~ 105 (423)
.+.|.+-..+-.-|..+|++||.|.+.+..++- -.|.|+|.+.++|..|+..|.|+++.-...+.++.++...
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 334444466777788999999999999988865 5799999999999999999999998877788888777643
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.06 E-value=0.94 Score=39.22 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=44.0
Q ss_pred CHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcC--CCCCCCccceEe
Q 014513 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN--GTPMPGTEQNFR 98 (423)
Q Consensus 36 ~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~--g~~~~~~~~~v~ 98 (423)
..+.|+++|..++.+..+.+.+.- +-..|.|.+.++|.+|...|+ +..+.+..+++-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 457899999999999888777753 568999999999999999999 888888664443
No 213
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=88.02 E-value=0.54 Score=39.76 Aligned_cols=77 Identities=10% Similarity=0.200 Sum_probs=60.6
Q ss_pred cceEEEecCCCCCC-----HHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCce-EEEEEEccc
Q 014513 233 NTTIFVGNLDPNVT-----EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQ-QVRISWGRK 306 (423)
Q Consensus 233 ~~~l~V~nL~~~~t-----e~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~-~l~v~~a~~ 306 (423)
.+++++.+++..+- ......+|.+|-+....++.++.+..-|.|.+++.|..|...+++..+.|+ .++.-+|.+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 35677777776542 234555677888888888888888888999999999999999999999888 888888885
Q ss_pred CCC
Q 014513 307 QDV 309 (423)
Q Consensus 307 ~~~ 309 (423)
...
T Consensus 90 ~~~ 92 (193)
T KOG4019|consen 90 GHP 92 (193)
T ss_pred CCc
Confidence 543
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.29 E-value=0.92 Score=45.99 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=62.0
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
...+.-++||+||...+..+-++.++..+|.|.+++... |+|++|..+..+.+|+..++-..+.+..+..+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 456677899999999999999999999999998887543 89999999999999998888777777666666
Q ss_pred e
Q 014513 99 L 99 (423)
Q Consensus 99 ~ 99 (423)
+
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 6
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=4.8 Score=40.37 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=60.5
Q ss_pred CCCcceEEEecCCCC-CCHHHHHHHhhhc----CCeEEEEEeCC------------------------------------
Q 014513 230 DITNTTIFVGNLDPN-VTEEELKQTFLHF----GEIVNVKIPMG------------------------------------ 268 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~----G~I~~v~i~~~------------------------------------ 268 (423)
...++.|-|-||.++ +...||.-+|..| |.|.+|.|.++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999985 8899999999877 69999998541
Q ss_pred --------C---------cEEEEEeCChHHHHHHHHHhCCeEeCce--EEEEEE
Q 014513 269 --------R---------GCGFVQFAARASAEEAILRMQGHMIGQQ--QVRISW 303 (423)
Q Consensus 269 --------~---------g~aFV~F~~~~~A~~Al~~l~g~~i~g~--~l~v~~ 303 (423)
| =||.|+|.+++.|......|.|..+... .|-++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 2799999999999999999999998654 555554
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.45 E-value=8.7 Score=27.07 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEE
Q 014513 244 NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (423)
Q Consensus 244 ~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v 301 (423)
.++-++++..+.+|+-.. |..++-=-||.|.+..+|+++....+|+.+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 477899999999996543 2234433489999999999999999999987777654
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.02 E-value=5.6 Score=28.66 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHhhCC----CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 126 PDVTDYLLQETFRSQYP----SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 126 ~~~t~~~l~~~F~~~~g----~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++..+|..++....| .|-.++|..+ |+||+.... .|+.+++.|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788889999843333 2455666554 899988665 788899999999999999999764
No 218
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.67 E-value=3.8 Score=37.65 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=51.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc-ceEEecccCC
Q 014513 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR-PMRISAATPK 197 (423)
Q Consensus 119 l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~-~i~v~~a~~~ 197 (423)
|-|-+.|+.- -..|..+| ++||.|.+.... +...+-.|.|.+..+|++||. .||+.|++. .|-|+..+.+
T Consensus 200 VTVfGFppg~-~s~vL~~F-~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLF-SRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCccc-hhHHHHHH-HhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 5556666553 35677788 899999887554 334589999999999999998 689888665 4456554443
No 219
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.55 E-value=3.9 Score=37.50 Aligned_cols=74 Identities=12% Similarity=0.300 Sum_probs=60.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCC-------------cEEEEEeCChHHHHH----HHHHhCC--e
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR-------------GCGFVQFAARASAEE----AILRMQG--H 292 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~-------------g~aFV~F~~~~~A~~----Al~~l~g--~ 292 (423)
..+.|...|+..+++-..+...|.+||.|++|.+..+. ....+.|-+.+.+-. .++.|.. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999998765 788999999988754 3444443 3
Q ss_pred EeCceEEEEEEcc
Q 014513 293 MIGQQQVRISWGR 305 (423)
Q Consensus 293 ~i~g~~l~v~~a~ 305 (423)
.+....|.|+|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3788888888876
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.41 E-value=10 Score=34.61 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCCCcceEEEEEcCH-------HHHHHHHHHcC
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEV-VSIKIIRNKITGQPEGYGFVEFVSH-------AAAERVLQTYN 86 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v-~~v~i~~~~~~g~~~g~afVeF~~~-------~~A~~al~~l~ 86 (423)
.-|+++|||.++.-.||+..+.+-+.+ .++.. .-..|-||+-|.+. .+..+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 349999999999999999999887642 22322 22467799999654 44555555443
No 221
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=72.15 E-value=6.4 Score=42.00 Aligned_cols=11 Identities=55% Similarity=1.201 Sum_probs=5.1
Q ss_pred CCCCCCCCCCC
Q 014513 327 GYGQGYDAYAY 337 (423)
Q Consensus 327 g~~~~y~~~gy 337 (423)
||+++|+++||
T Consensus 1193 GYGggys~gGy 1203 (1282)
T KOG0921|consen 1193 GYGGGYSGGGY 1203 (1282)
T ss_pred CcCCCCCCCCc
Confidence 34444544444
No 222
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=69.96 E-value=5.8 Score=32.93 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhhh
Q 014513 127 DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQY 206 (423)
Q Consensus 127 ~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~ 206 (423)
.++-..|.+.+....+....+.+..- ..++..+.|.+++++.++++ .....+.+..+.+...++......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~---- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE---- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc----
Confidence 46677788888655665545555442 24689999999999999987 344456777777766654332210
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeC
Q 014513 207 AAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPM 267 (423)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~I~~v~i~~ 267 (423)
........=|.|.|||.. .+++-|+.+.+.+|.+..+....
T Consensus 98 --------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 98 --------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred --------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 000111234567899987 68889999999999999988764
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.32 E-value=10 Score=36.30 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=47.1
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHH
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~-v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~ 83 (423)
.+=...|-|-++|.....+||...|+.|+. --+|+++-+. .||-.|.+...|..||-
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 334567999999999999999999999975 4566666654 69999999999999993
No 224
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=64.67 E-value=22 Score=26.40 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=43.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cCC-eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHH
Q 014513 25 TLWIGDLQYWFDENYLSSCFAH-TGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~-~G~-v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~ 84 (423)
.-|.-..+...+..+|++.++. ||. |.+|.....+ . ...-|||.+....+|..+...
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHh
Confidence 3556667889999999999988 564 7778776654 2 234599999999999888754
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=64.46 E-value=14 Score=30.66 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=67.9
Q ss_pred cEEEEcCCC--CCCCHHHHHHHhhc-cCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee-
Q 014513 24 RTLWIGDLQ--YWFDENYLSSCFAH-TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL- 99 (423)
Q Consensus 24 r~l~V~nLp--~~~~e~~L~~~F~~-~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~- 99 (423)
+...|+.+. ...+-..|...+.+ ++....+.+..- ..++..+.|.+++++.+++.. ..-.+.+ ..+.+
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~--~~~~l~ 87 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNG--HFLILQ 87 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccc--cchhhh
Confidence 345555553 34567777766655 344445555443 247899999999999999952 2223333 22222
Q ss_pred eccccCCCCCCCCCCCCceEE--EeCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeC
Q 014513 100 NWASFGIGEKRPDAGPEHSIF--VGDLAPD-VTDYLLQETFRSQYPSVRGAKVVTD 152 (423)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~l~--vgnLp~~-~t~~~l~~~F~~~~g~v~~v~i~~~ 152 (423)
.|.. ...... .......+| +.|||.. .+++.+..+- +..|.+.++...+.
T Consensus 88 ~W~~-~~~~~~-~~~~~~~vWVri~glP~~~~~~~~~~~i~-~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 88 RWSP-DFNPSE-VKFEHIPVWVRIYGLPLHLWSEEILKAIG-SKIGEPIEVDENTL 140 (153)
T ss_pred hhcc-cccccc-cceeccchhhhhccCCHHHhhhHHHHHHH-HhcCCeEEEEcCCC
Confidence 3321 111111 111223344 5799987 5666777777 89999998866443
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.42 E-value=15 Score=25.33 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.2
Q ss_pred HHHHHHhhhcCCeEEEEEe
Q 014513 248 EELKQTFLHFGEIVNVKIP 266 (423)
Q Consensus 248 ~~L~~~F~~~G~I~~v~i~ 266 (423)
++||++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999876664
No 227
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.48 E-value=4.8 Score=36.41 Aligned_cols=23 Identities=48% Similarity=0.863 Sum_probs=20.5
Q ss_pred CCHHHHHHHhhhcCCeEEEEEeC
Q 014513 245 VTEEELKQTFLHFGEIVNVKIPM 267 (423)
Q Consensus 245 ~te~~L~~~F~~~G~I~~v~i~~ 267 (423)
.+++.|+..|+.||.|..|.|+.
T Consensus 173 pse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcc
Confidence 46789999999999999999975
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.37 E-value=38 Score=24.66 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=42.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHH
Q 014513 25 TLWIGDLQYWFDENYLSSCFAH-TG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~ 84 (423)
.-|+-.++.+.+..+|+..++. |+ .|.+|....-+ . ...-|||.+...+.|..+-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHh
Confidence 3566678899999999999987 55 47777766654 2 234599999999888877654
No 229
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=56.55 E-value=27 Score=27.34 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=59.7
Q ss_pred cCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccccCCCC
Q 014513 29 GDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGE 108 (423)
Q Consensus 29 ~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~~~~~ 108 (423)
.-||+-+++ |-++|+.-|+|.+|..+..-.+. -|... ..--|+..+|....|..... ..-
T Consensus 9 qVlPPYTnK--LSDYfeSPGKI~svItvtqypdn----dal~~------~~G~lE~vDg~i~IGs~q~~--------~sV 68 (145)
T TIGR02542 9 QVLPPYTNK--LSDYFESPGKIQSVITVTQYPDN----DALLY------VHGTLEQVDGNIRIGSGQTP--------ASV 68 (145)
T ss_pred EecCCccch--hhHHhcCCCceEEEEEEeccCCc----hhhhe------eeeehhhccCcEEEccCCCc--------ccE
Confidence 348887766 99999999999999765432111 11110 00112333443333322110 000
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhh--CCCeeEEEEeeCCCCCCCcceEEEEeCCHH
Q 014513 109 KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ--YPSVRGAKVVTDPNTGRSKGYGFVKFLDEN 170 (423)
Q Consensus 109 ~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~--~g~v~~v~i~~~~~tg~~~G~afV~f~~~~ 170 (423)
.-...+..+. |+--|..+|-.++++.|+++ |-.|..-.+.+|-....+-..||..|....
T Consensus 69 ~i~gTPsgnn--v~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 69 RIQGTPSGNN--VIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred EEecCCCCCc--eecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 0000001111 22346678999999999653 333444445555322234446888886553
No 230
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=54.33 E-value=65 Score=21.74 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCCh----HHHHHHHHH
Q 014513 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAAR----ASAEEAILR 288 (423)
Q Consensus 235 ~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~----~~A~~Al~~ 288 (423)
++.|.|+.=.--...+++.+...-.|.++.+....+.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 467777776666788999999999999999999999999999865 444555554
No 231
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=53.38 E-value=8.9 Score=33.75 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=7.3
Q ss_pred hhccccceeecC
Q 014513 406 AILGRTLWLKTS 417 (423)
Q Consensus 406 ~~~~~~~~~~~~ 417 (423)
+|-++. |.+-+
T Consensus 82 aLsn~~-~~~Fs 92 (221)
T KOG0037|consen 82 ALSNGT-WSPFS 92 (221)
T ss_pred HhhcCC-CCCCC
Confidence 777775 77654
No 232
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=51.98 E-value=26 Score=37.74 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=3.0
Q ss_pred cceEEEEe
Q 014513 159 KGYGFVKF 166 (423)
Q Consensus 159 ~G~afV~f 166 (423)
++|+=-.|
T Consensus 902 ~~~~g~kf 909 (1282)
T KOG0921|consen 902 RKFAGNKF 909 (1282)
T ss_pred hhcccccc
Confidence 33333333
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=50.26 E-value=23 Score=32.36 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=37.8
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCe-EEEEEeCCCcEEEEEeCChH
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEI-VNVKIPMGRGCGFVQFAARA 280 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I-~~v~i~~~~g~aFV~F~~~~ 280 (423)
.+-|+|+||+.++.-.||+..+.+-+.+ .++.-.-.+|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 4569999999999999999999888765 33333335789999998764
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=48.81 E-value=20 Score=28.45 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=26.7
Q ss_pred EEEcCCCCC---------CCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCH
Q 014513 26 LWIGDLQYW---------FDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75 (423)
Q Consensus 26 l~V~nLp~~---------~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~ 75 (423)
+.|-|+|.. .+-++|++.|+.|.++ .|+...++. -..|+++|+|.+.
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCC
Confidence 456666543 3567899999999886 577777762 4578999999654
No 235
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=46.88 E-value=70 Score=30.97 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=61.3
Q ss_pred CCcCCccEEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEEecCC----------CC--------------------
Q 014513 18 MTLEEVRTLWIGDLQYW-FDENYLSSCFAHT----GEVVSIKIIRNKI----------TG-------------------- 62 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~-~~e~~L~~~F~~~----G~v~~v~i~~~~~----------~g-------------------- 62 (423)
.+-.++++|-|-||.|+ +.-.+|...|+.| |.+..|.|....- .|
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~ 220 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGD 220 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCC
Confidence 34567788999999987 7889999988876 5688888765321 01
Q ss_pred ------C-----------------------------CcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 63 ------Q-----------------------------PEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 63 ------~-----------------------------~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
. ...||+|++.+.+.+..+...++|..+......+-+
T Consensus 221 dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DL 292 (622)
T COG5638 221 DNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDL 292 (622)
T ss_pred ccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeee
Confidence 0 124799999999999999999999998875544444
No 236
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=45.67 E-value=43 Score=35.27 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=9.7
Q ss_pred CCCCCCccHHHHhH
Q 014513 384 YDPLATPDVDKLNA 397 (423)
Q Consensus 384 ~~p~~~~dv~~~n~ 397 (423)
..|+-..||++||.
T Consensus 988 ~~~~~~l~~~~l~G 1001 (1039)
T KOG0199|consen 988 AQPLGELDIMELLG 1001 (1039)
T ss_pred ccchhhhhHHHhhc
Confidence 35666678888875
No 237
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=45.29 E-value=29 Score=29.57 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=37.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCC--CCcceEEEEEcCHHHHHHHHHH
Q 014513 23 VRTLWIGDLQYWFDENYLSSCFAHT-GEVVSIKIIRNKITG--QPEGYGFVEFVSHAAAERVLQT 84 (423)
Q Consensus 23 ~r~l~V~nLp~~~~e~~L~~~F~~~-G~v~~v~i~~~~~~g--~~~g~afVeF~~~~~A~~al~~ 84 (423)
.|++|.. .+++.|.++..-. |.+..|...+.. .+ .-+|..||+|.+.+.|.++++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455554 3444444433222 678888776654 33 4568899999999999998864
No 238
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=43.91 E-value=1.1e+02 Score=29.59 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=59.2
Q ss_pred CCCCCcceEEEecCCCC-CCHHHHHHHhhhc----CCeEEEEEeCC----------------------------------
Q 014513 228 DNDITNTTIFVGNLDPN-VTEEELKQTFLHF----GEIVNVKIPMG---------------------------------- 268 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~----G~I~~v~i~~~---------------------------------- 268 (423)
+.+.+...|-|-||.++ +...+|.-+|+.| |+|..|.|.++
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~ 220 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGD 220 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCC
Confidence 44566788999999875 8889999999877 67887877420
Q ss_pred ------------------Cc-------------------EEEEEeCChHHHHHHHHHhCCeEeCc--eEEEEEEcc
Q 014513 269 ------------------RG-------------------CGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGR 305 (423)
Q Consensus 269 ------------------~g-------------------~aFV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~a~ 305 (423)
+| ||.|.|.+.+.++.....|.|.+... ..+-+.|..
T Consensus 221 dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 221 DNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred ccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 12 78999999999999999999988654 355555543
No 239
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.37 E-value=20 Score=30.62 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=50.9
Q ss_pred EEEEcCCCCCCCHH-----HHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 25 TLWIGDLQYWFDEN-----YLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 25 ~l~V~nLp~~~~e~-----~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
++.+.+|+..+..+ ....+|.+|-+..-..+++. .+..-|.|.++++|..|...+++..|.+.. .++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~-~~k~ 84 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKN-ELKL 84 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCc-eEEE
Confidence 47777887664322 23567777776655555554 467889999999999999999999999874 4444
Q ss_pred eccc
Q 014513 100 NWAS 103 (423)
Q Consensus 100 ~~a~ 103 (423)
-++.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 4443
No 240
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=39.92 E-value=1.2e+02 Score=21.69 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.3
Q ss_pred HHHHHHhhhcCCeEEEEEeCC--CcEEEEEeCChHHHHHHHHHhC
Q 014513 248 EELKQTFLHFGEIVNVKIPMG--RGCGFVQFAARASAEEAILRMQ 290 (423)
Q Consensus 248 ~~L~~~F~~~G~I~~v~i~~~--~g~aFV~F~~~~~A~~Al~~l~ 290 (423)
.+|++.+.++| +....+.-+ -++.|+-+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777788899 666666666 7899999999999999888763
No 241
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=38.15 E-value=59 Score=24.00 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=25.4
Q ss_pred CeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCCeE
Q 014513 259 EIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHM 293 (423)
Q Consensus 259 ~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~ 293 (423)
.|.++..+.+ +||-||+=.+.+++.+|+..+.+-.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 6777777664 8999999999999999998886543
No 242
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.00 E-value=28 Score=31.69 Aligned_cols=68 Identities=19% Similarity=0.394 Sum_probs=42.1
Q ss_pred ccEEEEcCCCCC------------CCHHHHHHHhhccCCeeEEEEE-----ecCCCCCCcceE--------------EEE
Q 014513 23 VRTLWIGDLQYW------------FDENYLSSCFAHTGEVVSIKII-----RNKITGQPEGYG--------------FVE 71 (423)
Q Consensus 23 ~r~l~V~nLp~~------------~~e~~L~~~F~~~G~v~~v~i~-----~~~~~g~~~g~a--------------fVe 71 (423)
--||++.+||.. -+|.-|+..|..||.|..|.|+ +...+|+..|.- ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 346888888853 3567799999999999988774 233455554332 244
Q ss_pred EcCHHHHHHHHHHcCCCCC
Q 014513 72 FVSHAAAERVLQTYNGTPM 90 (423)
Q Consensus 72 F~~~~~A~~al~~l~g~~~ 90 (423)
|-.-..-..|+..|.|.++
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 4433344445555555544
No 243
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.59 E-value=96 Score=21.93 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCC
Q 014513 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 131 ~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~ 197 (423)
++|.+.|....=+|..+.-+..+.++.+--.-||+.+...+...+ ++=+.+.+..+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 467788855555788998888887788888899998887663333 3445567777888765443
No 244
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=33.45 E-value=16 Score=23.89 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=7.8
Q ss_pred eeecCCCCCC
Q 014513 413 WLKTSSLTPQ 422 (423)
Q Consensus 413 ~~~~~~~~~~ 422 (423)
|||+.|++|-
T Consensus 36 WqptpsDLq~ 45 (55)
T PRK13859 36 WQPTPSDLQL 45 (55)
T ss_pred ccCChhhccc
Confidence 9999877663
No 245
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.61 E-value=48 Score=31.87 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=49.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCC--CCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKIT--GQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~-v~~v~i~~~~~~--g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
+..+.|.|..||+..++++|.+-...+-. |.-..+...... ..-.+.|||.|...++.......++|..+..
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 34567999999999999999888777654 222222221111 1124569999999999888888888866643
No 246
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.38 E-value=22 Score=34.31 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCccEEEEcCCCCCCCHH--------HHHHHhhc--cCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHH
Q 014513 21 EEVRTLWIGDLQYWFDEN--------YLSSCFAH--TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~--------~L~~~F~~--~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~ 83 (423)
-..|.+|+.+.......+ ++...|.. .+++..+...++......+|..|++|+....+++.+.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345678888887765555 89999988 6788888888888778889999999999999999883
No 247
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.64 E-value=49 Score=31.35 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=23.6
Q ss_pred EEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 272 GFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 272 aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
|||+|++..+|..|++.+.... .+.+++..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999999664433 3445666554
No 248
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.02 E-value=3.1e+02 Score=28.95 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHhhhcCCeEE-----EEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 243 PNVTEEELKQTFLHFGEIVN-----VKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 243 ~~~te~~L~~~F~~~G~I~~-----v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
..++..+|-.+...-+.|.. |+|. ..|.||+-.. +.|...+..|++..+.|+.|.|+.++
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 35888888888877766554 4443 5789999854 45788899999999999999999875
No 249
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.66 E-value=82 Score=30.46 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=44.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCe-EEEEEeCCCcEEEEEeCChHHHHHHHHH
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEI-VNVKIPMGRGCGFVQFAARASAEEAILR 288 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I-~~v~i~~~~g~aFV~F~~~~~A~~Al~~ 288 (423)
-.+.|-|-+.|...-.+||...|+.|+.- .+|+-+ +...+|-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 45789999999999999999999999643 222222 578899999999999999875
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.34 E-value=82 Score=29.83 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.5
Q ss_pred EEEEeCCHHHHHHHHHhhC
Q 014513 162 GFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 162 afV~f~~~~~a~~a~~~~~ 180 (423)
|||+|++..+|..|.+.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~ 19 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL 19 (325)
T ss_pred CEEEECCHHHHHHHHHHHh
Confidence 7999999999999998433
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.28 E-value=39 Score=30.17 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=29.5
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSI 53 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v 53 (423)
+.-+.++||+-|+|..++++.|..+.+++|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 33466779999999999999999999999966554
No 252
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=30.17 E-value=1.5e+02 Score=22.84 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEeeCCCC----CCCcceEEEEeCCHHHHHH
Q 014513 127 DVTDYLLQETFRSQYPSVRGAKVVTDPNT----GRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 127 ~~t~~~l~~~F~~~~g~v~~v~i~~~~~t----g~~~G~afV~f~~~~~a~~ 174 (423)
..+..+|++.+.+.++.=.+..++..-.| |++.|||.| |.+.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 56788999999888886555555544333 355555554 455555443
No 253
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=29.76 E-value=5e+02 Score=24.79 Aligned_cols=115 Identities=13% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCCCCCCHHHHHHHh----hccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccccC
Q 014513 30 DLQYWFDENYLSSCF----AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFG 105 (423)
Q Consensus 30 nLp~~~~e~~L~~~F----~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~~ 105 (423)
|.+++-+-+.++..| +++|.-.++++.+.-- .++|=+-|.|.-.-. +.+....+..+.
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-----~~l~~i~l~~~g----------- 180 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-----KLLPPLLLEERG----------- 180 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-----cCCCcceeecCC-----------
Confidence 456666677776544 7899877888877532 344445555533221 011111111100
Q ss_pred CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCcceEEEEeCC
Q 014513 106 IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLD 168 (423)
Q Consensus 106 ~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g--~v~~v~i~~~~~tg~~~G~afV~f~~ 168 (423)
......-..++.+||+.+.+.++...- +... ...++.+..+...+.+.|++.+.+..
T Consensus 181 -----~i~~irg~~~~~~l~~~va~r~~~~a~-~~L~~~~~~dv~i~~~~~~~~s~G~~i~L~ae 239 (326)
T cd00874 181 -----EIEKIRGISHAANLPPHVAERQAEAAA-ALLRKALGLQIEIEPEDQSALGPGSGIVLWAE 239 (326)
T ss_pred -----CeEEEEEEEEEccCCHHHHHHHHHHHH-HHHhhccCCCeEEEEEecCCCCCCEEEEEEEE
Confidence 000112246788999998877665544 3332 22355666665557888998876653
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.64 E-value=9.5 Score=37.02 Aligned_cols=79 Identities=8% Similarity=-0.154 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccc
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~ 103 (423)
.+.++.+||...++.++.-+|..||-|.-+..-+....+-.+-.+||.-.+. .+..|+..+.-..+.+...++.+...+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCchh
Confidence 3467889999999999999999999998888777776777777888877654 477777666666666655555554433
No 255
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=29.23 E-value=9 Score=38.32 Aligned_cols=72 Identities=8% Similarity=0.032 Sum_probs=50.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
-..++|+++|+++.++-++|..+|+.+--+..+-+........-..+.+|.|+---....|.-.||+.-+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 356789999999999999999999998666555443332223344568899976555555555566655544
No 256
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.77 E-value=9 Score=38.34 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=53.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
+++|||.|+++.++-.+|.... +.+.-+..+-+.....-.+...+++|+|+.--....|+.++|+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~c-k~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLC-KGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHh-ccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5679999999999999999999 777666666555444344566788999988777777777777766543
No 257
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=28.33 E-value=1.1e+02 Score=21.65 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=44.7
Q ss_pred HHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCC
Q 014513 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 131 ~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~ 197 (423)
++|.+.|....=++..+.-+..+.++.+-..-||+.....+... -++=+.+.++.+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46778884444478899999888878788888888877654433 24455667888888765443
No 258
>PF14893 PNMA: PNMA
Probab=28.06 E-value=45 Score=31.84 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=24.2
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhc
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAH 46 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~ 46 (423)
+.....|.|.|.+||.+|++.+|++.+..
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 34556788999999999999999987754
No 259
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=27.83 E-value=2.2e+02 Score=20.06 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=37.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCCh
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAAR 279 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~ 279 (423)
.++.|.++.=.--...+....+....|..+.+...++.++|.|.+.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 4567777665555678888888888899999999999999999983
No 260
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.44 E-value=1e+02 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.2
Q ss_pred CcceEEEEEcCHHHHHHHHHHcCC
Q 014513 64 PEGYGFVEFVSHAAAERVLQTYNG 87 (423)
Q Consensus 64 ~~g~afVeF~~~~~A~~al~~l~g 87 (423)
-+||.|||=.++.++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 689999999999999999965543
No 261
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=24.55 E-value=52 Score=20.02 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhhhcC
Q 014513 243 PNVTEEELKQTFLHFG 258 (423)
Q Consensus 243 ~~~te~~L~~~F~~~G 258 (423)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998754
No 262
>PRK11901 hypothetical protein; Reviewed
Probab=24.42 E-value=3.1e+02 Score=26.07 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=45.3
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEE--EEEcCHHHHHHHHHHcCC
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGF--VEFVSHAAAERVLQTYNG 87 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~af--VeF~~~~~A~~al~~l~g 87 (423)
.+....+|-|-.+. +++.|..|..+.+ +..+++.+....|+.- |.+ =.|.+.++|..|++.|--
T Consensus 241 ~p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 241 APASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 45566777777654 6888999888875 4667777765555443 332 368999999999988753
No 263
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.76 E-value=2.2e+02 Score=23.53 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=38.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cCC-eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHH
Q 014513 25 TLWIGDLQYWFDENYLSSCFAH-TGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~-~G~-v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~ 83 (423)
.-|+-.+....+..+|++.++. |+. |..|..+.-+ . ...-|||.+....+|..+..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~--g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-D--GLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-C--CceEEEEEECCCCcHHHHHH
Confidence 3555567888899999999987 653 6666555543 2 22349999988877665543
No 264
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.11 E-value=1.1e+02 Score=29.44 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=49.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEE-EEeC-C-------CcEEEEEeCChHHHHHHHHHhCCeE-eCceE
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNV-KIPM-G-------RGCGFVQFAARASAEEAILRMQGHM-IGQQQ 298 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v-~i~~-~-------~g~aFV~F~~~~~A~~Al~~l~g~~-i~g~~ 298 (423)
-+.+.|.+||+..++++|.+...+|-.=+.. .+.+ + .+.++|.|...++...-....+|++ |+.+-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 4788999999999999999888776543332 2221 1 3789999999999888888888887 44443
No 265
>PF14893 PNMA: PNMA
Probab=22.15 E-value=1e+02 Score=29.44 Aligned_cols=59 Identities=12% Similarity=0.256 Sum_probs=36.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC-CCCCcceEEEEeCCHHHH
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN-TGRSKGYGFVKFLDENER 172 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~-tg~~~G~afV~f~~~~~a 172 (423)
...+.|.|.+||.++++.+|++.+....-+.-..+|....- .....--++|+|...-+-
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~ 75 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNY 75 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccch
Confidence 34677999999999999999999854343333444432100 011233578888765443
No 266
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.20 E-value=3.3e+02 Score=20.19 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=39.4
Q ss_pred EEEecCCCCCCHHHHHHHhhhc-C-CeEEEEEe---CCCcEEEEEeCChHHHHHHHHHh
Q 014513 236 IFVGNLDPNVTEEELKQTFLHF-G-EIVNVKIP---MGRGCGFVQFAARASAEEAILRM 289 (423)
Q Consensus 236 l~V~nL~~~~te~~L~~~F~~~-G-~I~~v~i~---~~~g~aFV~F~~~~~A~~Al~~l 289 (423)
-|+-.++...+..+|++.++.. | .|.+|... .+..-|||++..-.+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3555667889999999999874 4 45555443 34578999999999988865543
No 267
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.26 E-value=2.5e+02 Score=22.82 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhhCC-CeeEEEEeeCCC----CCCCcceEEEEeCCHHHHH
Q 014513 126 PDVTDYLLQETFRSQYP-SVRGAKVVTDPN----TGRSKGYGFVKFLDENERN 173 (423)
Q Consensus 126 ~~~t~~~l~~~F~~~~g-~v~~v~i~~~~~----tg~~~G~afV~f~~~~~a~ 173 (423)
...+..+|++.+...|+ .=.+..++..-. .|++.|||.| |.+.+.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 36688999999988888 433443433322 2455666555 44544443
Done!