Query 014513
Match_columns 423
No_of_seqs 336 out of 2740
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.2E-46 1.1E-50 349.7 30.1 242 20-309 19-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-45 5.4E-50 346.4 29.2 249 16-307 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 4.2E-35 1.4E-39 262.3 19.3 167 112-307 11-181 (213)
4 4f02_A Polyadenylate-binding p 100.0 4.7E-34 1.6E-38 255.5 16.7 173 19-199 11-183 (213)
5 1l3k_A Heterogeneous nuclear r 100.0 2.9E-33 1E-37 246.9 20.4 175 110-311 7-187 (196)
6 1l3k_A Heterogeneous nuclear r 100.0 4.5E-33 1.5E-37 245.7 20.6 182 15-200 5-186 (196)
7 3md3_A Nuclear and cytoplasmic 100.0 4.7E-33 1.6E-37 238.7 19.9 165 24-195 1-165 (166)
8 1b7f_A Protein (SXL-lethal pro 100.0 5.2E-33 1.8E-37 239.0 19.6 159 115-304 2-168 (168)
9 3md3_A Nuclear and cytoplasmic 100.0 7.9E-33 2.7E-37 237.3 20.3 160 117-306 1-166 (166)
10 2qfj_A FBP-interacting repress 100.0 5.1E-33 1.7E-37 249.2 19.3 175 115-309 27-207 (216)
11 1fxl_A Paraneoplastic encephal 100.0 9.8E-33 3.3E-37 236.9 20.3 159 115-304 1-167 (167)
12 2qfj_A FBP-interacting repress 100.0 7.9E-34 2.7E-38 254.5 13.6 180 18-200 23-208 (216)
13 1b7f_A Protein (SXL-lethal pro 100.0 2E-32 6.9E-37 235.3 19.9 165 22-194 2-168 (168)
14 1fxl_A Paraneoplastic encephal 100.0 2.6E-32 9E-37 234.3 20.2 164 23-194 2-167 (167)
15 3nmr_A Cugbp ELAV-like family 100.0 6.6E-32 2.2E-36 233.7 19.8 168 22-195 2-175 (175)
16 2cjk_A Nuclear polyadenylated 100.0 6.3E-33 2.2E-37 238.3 12.5 166 21-197 1-166 (167)
17 3nmr_A Cugbp ELAV-like family 100.0 6.3E-32 2.1E-36 233.8 18.8 161 115-305 2-175 (175)
18 2cjk_A Nuclear polyadenylated 100.0 1.9E-32 6.4E-37 235.4 14.2 159 115-307 2-166 (167)
19 2adc_A Polypyrimidine tract-bi 100.0 3.5E-31 1.2E-35 239.5 21.8 190 112-307 30-228 (229)
20 3pgw_A U1-A; protein-RNA compl 100.0 9.2E-31 3.2E-35 244.4 24.0 191 111-305 4-281 (282)
21 1fje_B Nucleolin RBD12, protei 100.0 8.7E-32 3E-36 233.1 15.3 165 111-307 8-174 (175)
22 2yh0_A Splicing factor U2AF 65 100.0 2.7E-31 9.1E-36 234.7 16.4 177 115-309 3-196 (198)
23 1qm9_A Polypyrimidine tract-bi 100.0 6.8E-31 2.3E-35 232.2 17.8 186 116-307 3-197 (198)
24 2g4b_A Splicing factor U2AF 65 100.0 1.5E-30 5E-35 224.6 18.4 160 21-195 2-172 (172)
25 3tyt_A Heterogeneous nuclear r 100.0 2E-30 6.8E-35 229.7 19.6 184 115-304 3-204 (205)
26 2g4b_A Splicing factor U2AF 65 100.0 2.2E-30 7.4E-35 223.6 19.2 153 115-305 3-172 (172)
27 2yh0_A Splicing factor U2AF 65 100.0 5.3E-30 1.8E-34 226.4 18.1 169 21-199 2-196 (198)
28 3tyt_A Heterogeneous nuclear r 100.0 1.4E-29 4.9E-34 224.2 18.7 165 22-194 3-204 (205)
29 1fje_B Nucleolin RBD12, protei 100.0 1.9E-30 6.5E-35 224.7 11.5 167 18-197 8-174 (175)
30 3smz_A Protein raver-1, ribonu 100.0 3E-29 1E-33 234.4 20.5 174 22-201 94-268 (284)
31 2ghp_A U4/U6 snRNA-associated 100.0 2.3E-29 7.7E-34 236.2 17.4 173 20-197 114-291 (292)
32 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-28 5.6E-33 229.1 21.3 169 18-195 4-281 (282)
33 2adc_A Polypyrimidine tract-bi 100.0 2.7E-28 9.1E-33 220.5 21.2 169 18-197 29-228 (229)
34 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-28 8.7E-33 215.7 17.6 165 22-197 2-197 (198)
35 3sde_A Paraspeckle component 1 100.0 3.4E-28 1.2E-32 224.2 19.1 160 18-198 17-180 (261)
36 3sde_A Paraspeckle component 1 100.0 4.1E-28 1.4E-32 223.7 19.3 154 112-308 18-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 7E-23 2.4E-27 174.0 15.2 145 146-309 2-152 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 5.7E-23 1.9E-27 174.5 14.6 145 52-199 2-152 (158)
39 2i2y_A Fusion protein consists 99.9 7.3E-23 2.5E-27 172.2 12.0 137 156-307 10-148 (150)
40 4f25_A Polyadenylate-binding p 99.8 2.4E-21 8.3E-26 155.0 9.9 109 116-249 5-113 (115)
41 4f25_A Polyadenylate-binding p 99.8 5E-21 1.7E-25 153.2 9.3 109 22-132 4-113 (115)
42 2i2y_A Fusion protein consists 99.8 1.9E-20 6.4E-25 157.4 11.9 128 62-198 10-149 (150)
43 1sjq_A Polypyrimidine tract-bi 99.8 5.8E-20 2E-24 142.5 10.4 82 230-311 13-96 (105)
44 4fxv_A ELAV-like protein 1; RN 99.8 9.5E-20 3.2E-24 141.4 10.9 81 115-196 18-98 (99)
45 3r27_A HnRNP L, heterogeneous 99.8 1.7E-19 5.7E-24 138.4 11.5 80 229-308 17-98 (100)
46 2cq1_A PTB-like protein L; RRM 99.8 6.1E-19 2.1E-23 136.8 14.3 82 229-310 11-94 (101)
47 2wbr_A GW182, gawky, LD47780P; 99.8 2.5E-19 8.5E-24 132.3 11.3 74 232-305 6-79 (89)
48 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-19 5.3E-24 140.2 10.7 75 232-306 18-98 (99)
49 1wex_A Hypothetical protein (r 99.8 4.9E-19 1.7E-23 138.2 12.2 82 229-310 11-94 (104)
50 1x4d_A Matrin 3; structural ge 99.8 4.4E-19 1.5E-23 137.5 10.6 77 231-307 13-92 (102)
51 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.7E-19 2E-23 149.3 12.1 81 230-310 36-122 (156)
52 2lea_A Serine/arginine-rich sp 99.8 1.6E-19 5.6E-24 148.5 8.4 126 66-200 5-130 (135)
53 2lxi_A RNA-binding protein 10; 99.8 2.3E-19 8E-24 137.0 7.6 84 116-200 1-86 (91)
54 2cpj_A Non-POU domain-containi 99.8 1.4E-18 4.7E-23 135.1 12.1 81 229-309 11-91 (99)
55 3s8s_A Histone-lysine N-methyl 99.8 1E-18 3.5E-23 138.2 11.4 85 114-199 4-88 (110)
56 2dgu_A Heterogeneous nuclear r 99.8 4.2E-18 1.4E-22 133.4 14.7 79 231-311 9-87 (103)
57 2ad9_A Polypyrimidine tract-bi 99.8 7.9E-19 2.7E-23 139.6 10.6 82 230-311 28-111 (119)
58 2cq3_A RNA-binding protein 9; 99.8 4.8E-18 1.6E-22 133.1 14.9 84 228-311 10-97 (103)
59 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.8E-18 2E-22 132.6 15.1 81 229-309 11-95 (103)
60 2dgx_A KIAA0430 protein; RRM d 99.8 3.1E-18 1E-22 132.3 12.9 79 231-309 7-92 (96)
61 1x4g_A Nucleolysin TIAR; struc 99.8 2.5E-18 8.4E-23 136.2 12.6 81 230-310 22-102 (109)
62 1why_A Hypothetical protein ri 99.8 2.2E-18 7.5E-23 133.4 12.0 80 230-309 14-95 (97)
63 2dgo_A Cytotoxic granule-assoc 99.8 6.6E-18 2.2E-22 135.1 15.1 82 229-310 11-98 (115)
64 1x4c_A Splicing factor, argini 99.8 8.9E-18 3E-22 132.7 15.2 78 231-309 13-95 (108)
65 2ytc_A PRE-mRNA-splicing facto 99.8 1.9E-18 6.4E-23 130.3 10.6 77 229-305 8-85 (85)
66 1whw_A Hypothetical protein ri 99.8 4.8E-18 1.6E-22 132.0 13.1 80 231-310 6-91 (99)
67 2cpd_A Apobec-1 stimulating pr 99.8 9.1E-18 3.1E-22 130.4 14.5 81 227-309 9-91 (99)
68 2dnq_A RNA-binding protein 4B; 99.8 3.5E-18 1.2E-22 130.3 11.7 78 231-310 6-83 (90)
69 1x4f_A Matrin 3; structural ge 99.8 1.6E-18 5.5E-23 136.2 9.6 80 230-309 22-104 (112)
70 1x4a_A Splicing factor, argini 99.8 1.1E-17 3.7E-22 132.4 14.5 81 229-309 18-101 (109)
71 2d9p_A Polyadenylate-binding p 99.8 4E-18 1.4E-22 133.5 11.9 82 229-310 11-96 (103)
72 2lkz_A RNA-binding protein 5; 99.8 8.1E-19 2.8E-23 134.6 7.6 82 114-196 7-94 (95)
73 2dgt_A RNA-binding protein 30; 99.8 9.2E-18 3.2E-22 128.5 13.3 80 229-310 6-85 (92)
74 2lxi_A RNA-binding protein 10; 99.8 1E-18 3.5E-23 133.4 7.7 77 233-309 1-85 (91)
75 2cph_A RNA binding motif prote 99.8 6E-18 2E-22 133.5 12.4 82 229-310 11-100 (107)
76 3md1_A Nuclear and cytoplasmic 99.8 4E-18 1.4E-22 127.9 10.8 75 234-308 2-82 (83)
77 2dnz_A Probable RNA-binding pr 99.8 5.4E-18 1.9E-22 130.6 11.8 80 231-310 3-88 (95)
78 2do0_A HnRNP M, heterogeneous 99.8 1.6E-17 5.4E-22 132.6 14.9 81 230-310 12-97 (114)
79 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.2E-18 1.8E-22 132.6 11.8 82 230-311 9-96 (102)
80 2lea_A Serine/arginine-rich sp 99.8 6.4E-19 2.2E-23 144.9 6.7 119 161-310 6-130 (135)
81 2do4_A Squamous cell carcinoma 99.8 1.1E-17 3.9E-22 130.1 13.3 82 228-309 12-98 (100)
82 1x5t_A Splicing factor 3B subu 99.8 3.9E-18 1.3E-22 131.7 10.5 80 231-310 3-89 (96)
83 2la4_A Nuclear and cytoplasmic 99.8 2.3E-18 8E-23 134.3 9.3 77 231-307 25-101 (101)
84 2dgo_A Cytotoxic granule-assoc 99.8 9.8E-18 3.4E-22 134.1 13.1 93 107-200 6-98 (115)
85 2fy1_A RNA-binding motif prote 99.8 6.3E-18 2.2E-22 135.2 11.9 80 231-310 5-89 (116)
86 2dnh_A Bruno-like 5, RNA bindi 99.8 8E-18 2.7E-22 132.3 12.3 82 230-311 12-101 (105)
87 3pgw_S U1-70K; protein-RNA com 99.8 2E-18 7E-23 169.2 10.9 79 231-309 100-184 (437)
88 2cpf_A RNA binding motif prote 99.8 5.5E-18 1.9E-22 131.4 11.2 80 231-310 3-91 (98)
89 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.6E-18 1.6E-22 128.7 10.4 76 232-307 5-86 (87)
90 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-17 3.8E-22 133.8 13.0 83 228-310 20-108 (115)
91 3md1_A Nuclear and cytoplasmic 99.8 6.6E-18 2.3E-22 126.7 10.9 82 116-198 1-82 (83)
92 1x5p_A Negative elongation fac 99.8 2.7E-17 9.4E-22 127.2 14.7 79 230-310 12-90 (97)
93 3s8s_A Histone-lysine N-methyl 99.7 4.1E-18 1.4E-22 134.7 10.1 79 21-99 4-82 (110)
94 2cq0_A Eukaryotic translation 99.7 7E-18 2.4E-22 132.1 11.4 85 15-99 7-91 (103)
95 1x5u_A Splicing factor 3B subu 99.7 1.5E-17 5E-22 130.7 13.2 87 13-99 5-91 (105)
96 2e5h_A Zinc finger CCHC-type a 99.7 5.5E-18 1.9E-22 130.3 10.4 83 16-98 9-91 (94)
97 1wf1_A RNA-binding protein RAL 99.7 6.8E-18 2.3E-22 133.8 11.2 76 231-308 25-101 (110)
98 1x5u_A Splicing factor 3B subu 99.7 1.1E-17 3.7E-22 131.5 12.3 90 110-200 9-98 (105)
99 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.2E-18 1.8E-22 144.7 11.2 137 164-310 11-155 (165)
100 2cqc_A Arginine/serine-rich sp 99.7 1.1E-17 3.8E-22 128.9 12.1 88 108-196 7-94 (95)
101 2dnz_A Probable RNA-binding pr 99.7 1.1E-17 3.9E-22 128.8 12.1 86 114-200 3-88 (95)
102 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.6E-18 1.9E-22 128.3 10.1 83 114-197 4-86 (87)
103 2dgs_A DAZ-associated protein 99.7 1.3E-17 4.5E-22 129.5 12.4 87 112-200 6-92 (99)
104 3p5t_L Cleavage and polyadenyl 99.7 1.9E-18 6.5E-23 131.8 7.5 82 117-199 2-85 (90)
105 2dnp_A RNA-binding protein 14; 99.7 1.4E-17 4.7E-22 127.0 12.2 78 230-309 6-83 (90)
106 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5E-18 1.7E-22 144.8 10.8 130 70-200 11-155 (165)
107 2jrs_A RNA-binding protein 39; 99.7 9.9E-18 3.4E-22 132.3 11.7 88 110-198 20-107 (108)
108 2cq0_A Eukaryotic translation 99.7 8.5E-18 2.9E-22 131.6 11.2 91 109-200 8-98 (103)
109 2jvr_A Nucleolar protein 3; RN 99.7 5.3E-18 1.8E-22 133.7 10.0 76 232-307 27-105 (111)
110 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.2E-18 2.5E-22 127.1 10.3 75 231-305 5-85 (85)
111 2cq2_A Hypothetical protein LO 99.7 7.1E-18 2.4E-22 132.6 10.6 78 231-308 23-107 (114)
112 2do4_A Squamous cell carcinoma 99.7 1.8E-17 6.3E-22 129.0 13.0 88 110-199 11-98 (100)
113 1whw_A Hypothetical protein ri 99.7 1.3E-17 4.3E-22 129.6 12.0 87 113-200 5-91 (99)
114 2cqc_A Arginine/serine-rich sp 99.7 9E-18 3.1E-22 129.4 11.0 86 15-102 7-92 (95)
115 2x1f_A MRNA 3'-END-processing 99.7 9.3E-18 3.2E-22 129.6 11.0 85 115-200 1-85 (96)
116 1u6f_A Tcubp1, RNA-binding pro 99.7 1.7E-17 5.8E-22 137.4 13.3 82 229-310 38-125 (139)
117 2d9p_A Polyadenylate-binding p 99.7 1.7E-17 6E-22 129.8 12.7 89 11-101 3-91 (103)
118 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.4E-18 3.2E-22 131.1 11.0 88 112-200 8-95 (102)
119 2err_A Ataxin-2-binding protei 99.7 7.2E-18 2.5E-22 133.4 10.5 81 227-307 23-107 (109)
120 2cqh_A IGF-II mRNA-binding pro 99.7 4.3E-18 1.5E-22 130.7 8.9 78 231-309 6-85 (93)
121 2hvz_A Splicing factor, argini 99.7 4.8E-18 1.6E-22 132.5 9.3 77 234-310 1-78 (101)
122 2kxn_B Transformer-2 protein h 99.7 8.3E-18 2.8E-22 137.0 11.1 85 15-99 38-122 (129)
123 1x4h_A RNA-binding protein 28; 99.7 2E-17 6.9E-22 131.3 13.0 90 110-200 9-104 (111)
124 2xnq_A Nuclear polyadenylated 99.7 1.4E-17 4.9E-22 128.7 11.7 77 229-307 18-95 (97)
125 2cqd_A RNA-binding region cont 99.7 4E-17 1.4E-21 130.7 14.7 81 228-309 12-98 (116)
126 2x1f_A MRNA 3'-END-processing 99.7 1E-17 3.6E-22 129.3 10.9 76 233-308 2-83 (96)
127 2dnm_A SRP46 splicing factor; 99.7 9.6E-18 3.3E-22 131.3 10.7 90 110-200 7-96 (103)
128 2cpz_A CUG triplet repeat RNA- 99.7 1.4E-17 4.7E-22 133.2 11.8 89 111-200 20-108 (115)
129 2cpi_A CCR4-NOT transcription 99.7 1.7E-17 5.9E-22 131.7 12.2 79 230-308 12-102 (111)
130 3lqv_A PRE-mRNA branch site pr 99.7 5E-18 1.7E-22 135.8 8.9 105 113-259 5-109 (115)
131 1x5t_A Splicing factor 3B subu 99.7 1.1E-17 3.9E-22 129.1 10.6 86 114-200 3-89 (96)
132 2cpe_A RNA-binding protein EWS 99.7 1.6E-17 5.6E-22 132.3 11.8 83 228-310 10-106 (113)
133 2e5h_A Zinc finger CCHC-type a 99.7 2.1E-17 7.2E-22 127.0 12.0 85 110-195 10-94 (94)
134 2lkz_A RNA-binding protein 5; 99.7 2.8E-18 9.7E-23 131.6 7.0 84 18-103 4-93 (95)
135 2jvo_A Nucleolar protein 3; nu 99.7 9.6E-18 3.3E-22 132.3 10.2 79 228-308 26-104 (108)
136 2cph_A RNA binding motif prote 99.7 3.1E-17 1.1E-21 129.3 13.1 87 14-100 6-94 (107)
137 1p27_B RNA-binding protein 8A; 99.7 1.2E-17 4.2E-22 131.4 10.8 86 112-198 19-104 (106)
138 1x5s_A Cold-inducible RNA-bind 99.7 2.5E-17 8.5E-22 128.7 12.4 83 18-100 7-89 (102)
139 2cqd_A RNA-binding region cont 99.7 2.4E-17 8.1E-22 132.0 12.6 88 12-100 6-93 (116)
140 1whx_A Hypothetical protein ri 99.7 7.8E-18 2.7E-22 133.5 9.6 76 232-307 9-84 (111)
141 2div_A TRNA selenocysteine ass 99.7 1.1E-17 3.6E-22 130.1 10.2 87 18-104 4-93 (99)
142 2kvi_A Nuclear polyadenylated 99.7 4.5E-18 1.6E-22 131.3 8.0 79 230-310 7-86 (96)
143 4a8x_A RNA-binding protein wit 99.7 1.5E-17 5.1E-22 126.2 10.7 76 232-307 3-85 (88)
144 3ns6_A Eukaryotic translation 99.7 2.8E-18 9.5E-23 133.5 6.7 84 114-198 4-94 (100)
145 1x4h_A RNA-binding protein 28; 99.7 2.9E-17 9.8E-22 130.5 12.8 87 15-103 7-99 (111)
146 1x5s_A Cold-inducible RNA-bind 99.7 1.6E-17 5.6E-22 129.7 11.1 88 112-200 8-95 (102)
147 2dnh_A Bruno-like 5, RNA bindi 99.7 2.9E-17 9.8E-22 129.1 12.5 88 111-200 10-100 (105)
148 2dgv_A HnRNP M, heterogeneous 99.7 9E-18 3.1E-22 128.6 9.3 79 231-309 6-88 (92)
149 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.3E-17 4.3E-22 125.7 9.9 82 113-195 4-85 (85)
150 2dnm_A SRP46 splicing factor; 99.7 1.8E-17 6.2E-22 129.7 11.2 85 16-100 6-90 (103)
151 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-17 6.4E-22 131.3 11.3 81 229-309 22-108 (110)
152 2la6_A RNA-binding protein FUS 99.7 2.5E-17 8.4E-22 128.0 11.7 84 111-195 8-99 (99)
153 3ex7_B RNA-binding protein 8A; 99.7 1E-17 3.5E-22 136.3 9.9 82 229-310 18-105 (126)
154 2dgs_A DAZ-associated protein 99.7 4.8E-17 1.6E-21 126.3 13.3 82 18-100 5-86 (99)
155 2div_A TRNA selenocysteine ass 99.7 2.1E-17 7.3E-22 128.3 11.3 86 113-199 6-96 (99)
156 2dhg_A TRNA selenocysteine ass 99.7 1.7E-17 6E-22 130.1 10.9 88 111-200 4-93 (104)
157 2kxn_B Transformer-2 protein h 99.7 2.1E-17 7.1E-22 134.7 11.6 88 110-198 40-127 (129)
158 2ywk_A Putative RNA-binding pr 99.7 1.7E-17 5.8E-22 127.9 10.4 77 229-305 12-93 (95)
159 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-17 8.6E-22 129.6 11.2 89 111-200 8-99 (106)
160 2dhg_A TRNA selenocysteine ass 99.7 1.4E-17 4.8E-22 130.6 9.6 80 231-310 7-93 (104)
161 1oo0_B CG8781-PA, drosophila Y 99.7 2E-17 7E-22 131.1 10.6 89 110-199 20-108 (110)
162 2dh8_A DAZ-associated protein 99.7 2.3E-17 7.8E-22 129.6 10.7 87 14-103 7-93 (105)
163 2dng_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 128.1 11.7 88 110-200 9-96 (103)
164 1wi8_A EIF-4B, eukaryotic tran 99.7 3.3E-17 1.1E-21 128.4 11.6 88 110-200 9-97 (104)
165 2hvz_A Splicing factor, argini 99.7 1.2E-17 4E-22 130.3 8.8 77 117-199 1-77 (101)
166 2dng_A Eukaryotic translation 99.7 4.4E-17 1.5E-21 127.5 11.9 85 13-99 5-89 (103)
167 2cpf_A RNA binding motif prote 99.7 2E-17 6.9E-22 128.2 9.8 86 114-200 3-91 (98)
168 2ywk_A Putative RNA-binding pr 99.7 1.8E-17 6.2E-22 127.7 9.5 82 16-98 9-90 (95)
169 2cq3_A RNA-binding protein 9; 99.7 8.3E-17 2.8E-21 125.9 13.2 86 13-100 5-90 (103)
170 2cpe_A RNA-binding protein EWS 99.7 4.6E-17 1.6E-21 129.7 12.0 89 111-200 10-106 (113)
171 2a3j_A U1 small nuclear ribonu 99.7 2.1E-17 7.2E-22 133.7 10.0 78 231-308 27-111 (127)
172 2fy1_A RNA-binding motif prote 99.7 6.8E-17 2.3E-21 129.2 12.9 82 19-101 3-84 (116)
173 2do0_A HnRNP M, heterogeneous 99.7 8E-17 2.7E-21 128.5 13.0 82 18-100 10-91 (114)
174 2khc_A Testis-specific RNP-typ 99.7 3.5E-17 1.2E-21 131.4 10.9 82 18-99 35-116 (118)
175 1wg1_A KIAA1579 protein, homol 99.7 3.9E-17 1.3E-21 123.9 10.5 76 232-308 4-79 (88)
176 2la6_A RNA-binding protein FUS 99.7 5.9E-17 2E-21 125.8 11.7 85 15-99 5-97 (99)
177 3s7r_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 123.4 10.6 81 112-194 7-87 (87)
178 2fc9_A NCL protein; structure 99.7 8.9E-17 3E-21 125.3 12.8 81 229-309 11-93 (101)
179 1wi8_A EIF-4B, eukaryotic tran 99.7 5.2E-17 1.8E-21 127.3 11.4 85 14-100 6-91 (104)
180 2dis_A Unnamed protein product 99.7 4.2E-17 1.4E-21 129.0 11.0 80 231-310 6-95 (109)
181 2kt5_A RNA and export factor-b 99.7 1.1E-16 3.9E-21 129.6 13.7 112 85-199 5-116 (124)
182 1s79_A Lupus LA protein; RRM, 99.7 3.3E-17 1.1E-21 127.8 10.0 82 112-196 7-88 (103)
183 2dgp_A Bruno-like 4, RNA bindi 99.7 7E-17 2.4E-21 127.1 12.0 87 17-103 7-94 (106)
184 2cqi_A Nucleolysin TIAR; RNA r 99.7 1E-16 3.5E-21 125.4 12.8 86 15-104 7-92 (103)
185 2e5j_A Methenyltetrahydrofolat 99.7 6.7E-17 2.3E-21 125.0 11.6 78 230-308 16-95 (97)
186 1p27_B RNA-binding protein 8A; 99.7 7.3E-17 2.5E-21 127.0 11.9 84 16-99 16-99 (106)
187 3pgw_S U1-70K; protein-RNA com 99.7 4E-18 1.4E-22 167.2 5.6 156 40-199 9-184 (437)
188 3p5t_L Cleavage and polyadenyl 99.7 1.2E-17 4.1E-22 127.3 7.0 78 24-101 2-81 (90)
189 2cqp_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 127.1 9.4 85 112-197 11-95 (98)
190 2cqp_A RNA-binding protein 12; 99.7 2.5E-17 8.6E-22 127.7 8.7 82 18-99 10-91 (98)
191 3lqv_A PRE-mRNA branch site pr 99.7 3.1E-17 1E-21 131.2 9.3 106 19-143 4-109 (115)
192 2dh8_A DAZ-associated protein 99.7 3.8E-17 1.3E-21 128.4 9.7 89 110-200 10-98 (105)
193 1nu4_A U1A RNA binding domain; 99.7 4E-17 1.4E-21 126.3 9.6 78 231-308 6-90 (97)
194 3n9u_C Cleavage and polyadenyl 99.7 3.5E-17 1.2E-21 137.7 10.0 84 115-199 54-139 (156)
195 4a8x_A RNA-binding protein wit 99.7 3.8E-17 1.3E-21 123.9 9.3 83 115-198 3-86 (88)
196 1s79_A Lupus LA protein; RRM, 99.7 8.4E-17 2.9E-21 125.5 11.4 80 19-100 7-86 (103)
197 2dgw_A Probable RNA-binding pr 99.7 1E-16 3.5E-21 122.4 11.7 84 112-199 6-89 (91)
198 3ucg_A Polyadenylate-binding p 99.7 5.8E-17 2E-21 123.2 10.2 74 233-307 6-85 (89)
199 2rs2_A Musashi-1, RNA-binding 99.7 7E-17 2.4E-21 127.6 11.0 86 112-199 21-106 (109)
200 2dgw_A Probable RNA-binding pr 99.7 1E-16 3.4E-21 122.4 11.5 76 231-308 8-88 (91)
201 3ucg_A Polyadenylate-binding p 99.7 5.9E-17 2E-21 123.1 10.2 80 116-197 6-85 (89)
202 2jrs_A RNA-binding protein 39; 99.7 7.5E-17 2.6E-21 127.2 11.1 83 17-99 20-102 (108)
203 1x4a_A Splicing factor, argini 99.7 2.4E-16 8.1E-21 124.7 14.0 85 14-103 13-97 (109)
204 2khc_A Testis-specific RNP-typ 99.7 4.2E-17 1.4E-21 131.0 9.7 84 110-194 34-117 (118)
205 1x4e_A RNA binding motif, sing 99.7 1.6E-17 5.4E-22 125.2 6.7 81 114-195 3-83 (85)
206 1u6f_A Tcubp1, RNA-binding pro 99.7 7.2E-17 2.4E-21 133.6 11.3 89 111-200 37-125 (139)
207 2mss_A Protein (musashi1); RNA 99.7 2.9E-17 9.8E-22 120.6 7.9 75 118-194 1-75 (75)
208 2nlw_A Eukaryotic translation 99.7 6.2E-17 2.1E-21 127.1 10.2 78 230-307 12-100 (105)
209 2m2b_A RNA-binding protein 10; 99.7 2.1E-17 7.2E-22 135.3 7.8 87 112-200 19-111 (131)
210 3ns6_A Eukaryotic translation 99.7 2.8E-17 9.6E-22 127.8 8.1 79 21-99 4-89 (100)
211 3ulh_A THO complex subunit 4; 99.7 8.7E-17 3E-21 126.8 11.0 83 111-195 24-106 (107)
212 3ex7_B RNA-binding protein 8A; 99.7 9E-17 3.1E-21 130.6 10.8 89 111-200 17-105 (126)
213 1x4b_A Heterogeneous nuclear r 99.7 8.5E-17 2.9E-21 128.8 10.4 79 231-310 25-109 (116)
214 2wbr_A GW182, gawky, LD47780P; 99.7 6.6E-17 2.3E-21 119.4 8.9 74 115-195 6-79 (89)
215 2ek1_A RNA-binding protein 12; 99.7 1.8E-17 6.3E-22 127.6 6.2 80 20-99 12-91 (95)
216 1p1t_A Cleavage stimulation fa 99.7 6.2E-17 2.1E-21 126.9 9.3 85 115-200 7-91 (104)
217 2cqg_A TDP-43, TAR DNA-binding 99.7 2.5E-16 8.4E-21 123.2 12.7 88 110-200 9-96 (103)
218 2ek1_A RNA-binding protein 12; 99.7 3.1E-17 1.1E-21 126.3 7.3 83 113-196 12-94 (95)
219 3s7r_A Heterogeneous nuclear r 99.7 7.5E-17 2.6E-21 122.0 9.3 81 17-98 5-85 (87)
220 1p1t_A Cleavage stimulation fa 99.7 4.3E-17 1.5E-21 127.8 8.2 83 17-99 2-84 (104)
221 2hgl_A HNRPF protein, heteroge 99.7 3E-17 1E-21 134.4 7.5 86 12-99 33-121 (136)
222 1x4e_A RNA binding motif, sing 99.7 2.8E-17 9.5E-22 123.8 6.8 77 20-96 2-78 (85)
223 2fc8_A NCL protein; structure 99.7 1.6E-16 5.5E-21 124.1 11.4 82 229-310 11-95 (102)
224 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-16 4.8E-21 125.9 11.1 81 228-309 20-106 (109)
225 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-16 5.5E-21 122.5 11.2 82 114-199 7-92 (96)
226 3q2s_C Cleavage and polyadenyl 99.7 2.8E-17 9.7E-22 147.4 7.8 75 232-306 67-149 (229)
227 1wez_A HnRNP H', FTP-3, hetero 99.7 1.5E-16 5.2E-21 124.0 10.9 79 18-99 10-88 (102)
228 1wg5_A Heterogeneous nuclear r 99.7 1.5E-16 5E-21 124.7 10.8 80 18-99 10-90 (104)
229 3ulh_A THO complex subunit 4; 99.7 1.2E-16 4E-21 126.0 10.2 82 17-99 23-104 (107)
230 1wg5_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 125.0 10.4 86 111-199 10-96 (104)
231 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-16 4.3E-21 132.3 10.9 85 14-98 54-138 (140)
232 2cpi_A CCR4-NOT transcription 99.7 1.1E-16 3.8E-21 127.0 10.0 87 112-199 11-103 (111)
233 2cqg_A TDP-43, TAR DNA-binding 99.7 3.3E-16 1.1E-20 122.5 12.6 84 16-103 8-91 (103)
234 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.7E-17 1.6E-21 120.1 7.3 76 117-194 1-76 (77)
235 1sjq_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 123.4 10.2 83 14-104 7-91 (105)
236 2e5i_A Heterogeneous nuclear r 99.7 4.2E-16 1.4E-20 124.9 13.3 77 233-309 25-104 (124)
237 2dgv_A HnRNP M, heterogeneous 99.7 3E-16 1E-20 120.0 12.0 80 19-100 4-83 (92)
238 2cpx_A Hypothetical protein FL 99.7 2E-16 6.8E-21 126.4 11.4 81 230-310 22-108 (115)
239 1fjc_A Nucleolin RBD2, protein 99.7 7.9E-17 2.7E-21 124.3 8.7 80 229-309 12-93 (96)
240 1x4b_A Heterogeneous nuclear r 99.7 8.8E-17 3E-21 128.7 9.2 84 115-200 26-109 (116)
241 2jwn_A Embryonic polyadenylate 99.7 1.3E-16 4.3E-21 129.4 10.1 75 232-307 35-115 (124)
242 1wex_A Hypothetical protein (r 99.7 3.1E-16 1.1E-20 122.3 12.0 81 15-103 7-89 (104)
243 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.9E-16 6.3E-21 133.8 11.5 87 112-199 35-121 (156)
244 1wez_A HnRNP H', FTP-3, hetero 99.7 1.1E-16 3.8E-21 124.7 9.3 84 112-199 11-94 (102)
245 2dis_A Unnamed protein product 99.7 1.3E-16 4.5E-21 126.1 9.9 87 113-200 5-95 (109)
246 2cpy_A RNA-binding protein 12; 99.7 1E-16 3.6E-21 127.7 9.3 84 112-198 11-95 (114)
247 1x5o_A RNA binding motif, sing 99.7 2.7E-16 9.3E-21 125.4 11.6 85 111-197 20-112 (114)
248 2bz2_A Negative elongation fac 99.7 1.1E-16 3.7E-21 128.8 9.3 78 231-310 37-114 (121)
249 2dnn_A RNA-binding protein 12; 99.7 1.4E-16 4.7E-21 125.4 9.6 82 112-197 12-93 (109)
250 2e5g_A U6 snRNA-specific termi 99.7 2.8E-16 9.5E-21 120.7 11.2 77 232-309 7-84 (94)
251 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.6E-17 1.6E-21 126.6 6.8 84 112-198 15-99 (100)
252 3beg_B Splicing factor, argini 99.7 1.2E-16 4.2E-21 127.5 9.2 75 232-307 15-94 (115)
253 2ki2_A SS-DNA binding protein 99.7 2.7E-17 9.1E-22 125.4 5.1 81 117-199 2-82 (90)
254 1x4c_A Splicing factor, argini 99.7 4.2E-16 1.4E-20 123.0 12.2 80 18-104 10-92 (108)
255 2m2b_A RNA-binding protein 10; 99.7 1.6E-16 5.3E-21 130.1 10.0 84 16-100 16-105 (131)
256 2nlw_A Eukaryotic translation 99.7 1.7E-16 5.7E-21 124.6 9.7 84 112-198 11-101 (105)
257 3zzy_A Polypyrimidine tract-bi 99.7 4.7E-16 1.6E-20 125.1 12.5 79 232-310 27-109 (130)
258 3n9u_C Cleavage and polyadenyl 99.7 1.4E-16 4.8E-21 134.0 9.8 78 22-99 54-133 (156)
259 2err_A Ataxin-2-binding protei 99.7 2.1E-16 7.2E-21 124.9 10.2 87 108-197 21-107 (109)
260 3r27_A HnRNP L, heterogeneous 99.7 1.5E-16 5E-21 122.0 8.7 82 14-103 12-95 (100)
261 2e44_A Insulin-like growth fac 99.7 3.4E-16 1.2E-20 120.7 10.9 78 231-308 13-93 (96)
262 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3E-16 1E-20 130.0 11.3 84 110-194 57-140 (140)
263 2cq4_A RNA binding motif prote 99.7 1.2E-16 4.2E-21 127.4 8.5 80 19-99 21-100 (114)
264 2hzc_A Splicing factor U2AF 65 99.7 2.6E-16 8.8E-21 119.0 9.8 70 232-302 5-85 (87)
265 2kt5_A RNA and export factor-b 99.7 6.8E-16 2.3E-20 125.0 13.0 83 18-103 30-112 (124)
266 2cq1_A PTB-like protein L; RRM 99.7 5E-16 1.7E-20 120.4 11.5 85 109-200 8-94 (101)
267 2mss_A Protein (musashi1); RNA 99.7 1.2E-16 4.1E-21 117.3 7.6 73 25-98 1-73 (75)
268 1sjr_A Polypyrimidine tract-bi 99.7 4.1E-16 1.4E-20 130.2 11.6 77 232-308 45-125 (164)
269 2diu_A KIAA0430 protein; struc 99.7 2.2E-16 7.6E-21 117.6 8.8 73 233-309 9-86 (96)
270 2cq4_A RNA binding motif prote 99.7 1.3E-16 4.6E-21 127.2 8.2 82 115-198 24-105 (114)
271 1why_A Hypothetical protein ri 99.7 7.9E-16 2.7E-20 118.9 12.3 80 18-103 12-91 (97)
272 2cpy_A RNA-binding protein 12; 99.7 1.2E-16 4.2E-21 127.3 7.9 80 18-99 10-90 (114)
273 2ad9_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 124.1 10.7 85 109-200 24-110 (119)
274 2hgl_A HNRPF protein, heteroge 99.7 1.3E-16 4.5E-21 130.5 8.2 84 111-197 39-125 (136)
275 1x4d_A Matrin 3; structural ge 99.7 2E-16 6.8E-21 122.5 8.6 78 18-103 10-90 (102)
276 2krb_A Eukaryotic translation 99.7 1.4E-16 4.9E-21 118.7 7.5 73 23-97 1-80 (81)
277 2a3j_A U1 small nuclear ribonu 99.7 4.1E-16 1.4E-20 126.1 10.7 85 111-199 24-112 (127)
278 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-16 4E-21 118.0 6.9 75 24-99 1-75 (77)
279 2krb_A Eukaryotic translation 99.7 1.4E-16 4.6E-21 118.8 7.2 74 116-192 1-81 (81)
280 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-16 6E-21 123.3 8.1 83 15-99 11-94 (100)
281 2fc8_A NCL protein; structure 99.7 5.2E-16 1.8E-20 121.1 10.8 87 110-200 9-95 (102)
282 2fc9_A NCL protein; structure 99.7 5.5E-16 1.9E-20 120.8 10.8 86 110-200 9-94 (101)
283 2db1_A Heterogeneous nuclear r 99.7 1.7E-16 5.9E-21 127.2 8.1 80 18-99 12-94 (118)
284 1x5o_A RNA binding motif, sing 99.7 1.2E-15 4.1E-20 121.6 12.9 74 18-92 20-93 (114)
285 1wel_A RNA-binding protein 12; 99.7 1.8E-16 6E-21 128.5 8.1 81 18-99 20-100 (124)
286 2jwn_A Embryonic polyadenylate 99.7 3.4E-16 1.2E-20 126.8 9.8 83 115-199 35-117 (124)
287 2e5j_A Methenyltetrahydrofolat 99.7 1E-15 3.6E-20 118.2 12.0 77 18-99 14-90 (97)
288 1wel_A RNA-binding protein 12; 99.7 6.9E-17 2.4E-21 130.9 5.5 86 112-199 21-106 (124)
289 3d2w_A TAR DNA-binding protein 99.6 6E-16 2.1E-20 117.4 9.9 75 230-308 8-85 (89)
290 1fj7_A Nucleolin RBD1, protein 99.6 6E-16 2.1E-20 120.5 10.2 79 230-309 14-97 (101)
291 2db1_A Heterogeneous nuclear r 99.6 3.1E-16 1.1E-20 125.7 8.7 83 112-197 13-98 (118)
292 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-16 4.5E-21 117.0 5.8 75 118-194 1-75 (75)
293 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.2E-21 131.1 5.7 124 66-199 2-125 (139)
294 2hgm_A HNRPF protein, heteroge 99.6 4.1E-16 1.4E-20 125.6 8.7 81 16-99 35-117 (126)
295 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-16 3.8E-21 124.7 5.1 85 113-200 14-98 (101)
296 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.2E-21 131.1 5.6 81 16-99 39-119 (139)
297 2lcw_A RNA-binding protein FUS 99.4 1.4E-17 4.9E-22 133.3 0.0 79 231-309 5-97 (116)
298 2ki2_A SS-DNA binding protein 99.6 1.6E-16 5.3E-21 121.1 5.8 76 24-100 2-77 (90)
299 2cpj_A Non-POU domain-containi 99.6 1.2E-15 4.2E-20 118.3 11.0 79 15-99 7-85 (99)
300 1wf0_A TDP-43, TAR DNA-binding 99.6 4.1E-16 1.4E-20 118.2 8.0 76 232-309 4-80 (88)
301 2j8a_A Histone-lysine N-methyl 99.6 4.6E-16 1.6E-20 122.6 8.3 81 117-198 3-97 (136)
302 3q2s_C Cleavage and polyadenyl 99.6 3.1E-16 1.1E-20 140.6 8.3 82 115-197 67-150 (229)
303 2xs2_A Deleted in azoospermia- 99.6 2.8E-16 9.4E-21 122.7 6.9 78 230-309 6-88 (102)
304 2lmi_A GRSF-1, G-rich sequence 99.6 2.4E-16 8.3E-21 124.1 6.4 83 112-197 7-92 (107)
305 2dnq_A RNA-binding protein 4B; 99.6 2.3E-15 7.8E-20 114.6 11.5 80 112-200 4-83 (90)
306 2cpx_A Hypothetical protein FL 99.6 3.1E-16 1.1E-20 125.3 6.9 88 112-200 21-108 (115)
307 1iqt_A AUF1, heterogeneous nuc 99.6 3.1E-16 1E-20 115.0 6.2 74 25-99 1-74 (75)
308 2dnn_A RNA-binding protein 12; 99.6 8E-16 2.7E-20 121.0 8.6 78 19-99 12-89 (109)
309 2jvr_A Nucleolar protein 3; RN 99.6 1E-15 3.4E-20 120.6 9.1 78 115-197 27-105 (111)
310 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5.1E-20 118.2 9.9 77 114-197 25-101 (101)
311 1nu4_A U1A RNA binding domain; 99.6 6.1E-16 2.1E-20 119.5 7.4 84 112-199 4-91 (97)
312 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.4E-20 119.1 9.8 76 18-99 20-98 (112)
313 2ytc_A PRE-mRNA-splicing facto 99.6 2.6E-15 9E-20 112.9 10.7 78 110-194 6-84 (85)
314 2hgm_A HNRPF protein, heteroge 99.6 5E-16 1.7E-20 125.0 7.0 81 112-196 38-120 (126)
315 3u1l_A PRE-mRNA-splicing facto 99.6 4.9E-16 1.7E-20 138.6 7.7 79 230-308 131-230 (240)
316 1sjr_A Polypyrimidine tract-bi 99.6 2.9E-15 9.8E-20 125.1 11.6 84 19-106 42-125 (164)
317 3egn_A RNA-binding protein 40; 99.6 8.4E-16 2.9E-20 127.7 8.4 78 231-308 43-131 (143)
318 2dgt_A RNA-binding protein 30; 99.6 4.6E-15 1.6E-19 113.3 11.7 82 110-200 4-85 (92)
319 2lmi_A GRSF-1, G-rich sequence 99.6 7.6E-16 2.6E-20 121.2 7.5 80 18-99 6-88 (107)
320 2dha_A FLJ20171 protein; RRM d 99.6 6.1E-16 2.1E-20 124.3 6.9 81 114-197 21-105 (123)
321 2jvo_A Nucleolar protein 3; nu 99.6 1.7E-15 5.7E-20 119.4 9.1 88 6-103 14-101 (108)
322 2lcw_A RNA-binding protein FUS 99.4 4.8E-17 1.6E-21 130.2 0.0 87 113-200 4-98 (116)
323 2e5i_A Heterogeneous nuclear r 99.6 1E-14 3.5E-19 116.8 13.5 84 17-106 19-103 (124)
324 2dgu_A Heterogeneous nuclear r 99.6 5.8E-15 2E-19 115.3 11.7 79 113-200 8-86 (103)
325 3beg_B Splicing factor, argini 99.6 2.4E-15 8.2E-20 119.9 9.7 69 19-94 12-80 (115)
326 1x4g_A Nucleolysin TIAR; struc 99.6 3.4E-15 1.2E-19 117.9 10.4 81 113-200 22-102 (109)
327 2f3j_A RNA and export factor b 99.6 3.5E-15 1.2E-19 128.3 10.9 86 112-199 84-169 (177)
328 2cpd_A Apobec-1 stimulating pr 99.6 1.1E-14 3.6E-19 112.9 12.7 80 111-199 10-91 (99)
329 2xs2_A Deleted in azoospermia- 99.6 5.8E-16 2E-20 120.9 5.5 82 114-199 7-88 (102)
330 2xnq_A Nuclear polyadenylated 99.6 6.1E-15 2.1E-19 113.8 10.8 78 111-197 17-95 (97)
331 3zzy_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 119.0 10.7 85 18-107 23-108 (130)
332 2e44_A Insulin-like growth fac 99.6 4.8E-15 1.6E-19 114.2 9.9 83 111-198 10-93 (96)
333 2dha_A FLJ20171 protein; RRM d 99.6 2.1E-15 7.1E-20 121.2 8.1 77 20-98 20-100 (123)
334 2kvi_A Nuclear polyadenylated 99.6 5.7E-15 1.9E-19 113.8 10.2 76 19-102 6-82 (96)
335 2dnp_A RNA-binding protein 14; 99.6 7.4E-15 2.5E-19 111.7 10.5 79 112-199 5-83 (90)
336 1fjc_A Nucleolin RBD2, protein 99.6 2.2E-15 7.6E-20 116.1 7.3 82 112-199 12-93 (96)
337 2f3j_A RNA and export factor b 99.6 7.1E-15 2.4E-19 126.3 11.1 81 20-101 85-165 (177)
338 2cqh_A IGF-II mRNA-binding pro 99.6 5E-15 1.7E-19 113.4 8.8 80 113-200 5-86 (93)
339 2e5g_A U6 snRNA-specific termi 99.6 1.6E-14 5.3E-19 110.8 11.5 74 19-98 4-77 (94)
340 1wf1_A RNA-binding protein RAL 99.6 9.6E-15 3.3E-19 115.5 10.3 79 112-199 23-102 (110)
341 2diu_A KIAA0430 protein; struc 99.6 1.2E-14 4.3E-19 108.2 10.0 76 114-200 6-87 (96)
342 1wg1_A KIAA1579 protein, homol 99.6 7.1E-15 2.4E-19 111.3 8.7 76 115-198 4-79 (88)
343 1whx_A Hypothetical protein ri 99.6 5.2E-15 1.8E-19 117.2 8.0 77 115-198 9-85 (111)
344 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-14 3.9E-19 115.9 9.8 65 20-85 5-72 (114)
345 2pe8_A Splicing factor 45; RRM 99.6 1.7E-14 6E-19 112.5 10.6 76 231-306 6-93 (105)
346 1x5p_A Negative elongation fac 99.6 3.7E-14 1.3E-18 109.4 12.4 79 16-104 8-86 (97)
347 2dnl_A Cytoplasmic polyadenyla 99.6 9.5E-15 3.2E-19 116.3 9.2 79 113-195 5-86 (114)
348 2j8a_A Histone-lysine N-methyl 99.6 3.4E-15 1.2E-19 117.7 6.1 79 24-102 3-95 (136)
349 2voo_A Lupus LA protein; RNA-b 99.6 4E-14 1.4E-18 123.5 13.2 117 168-306 63-186 (193)
350 2cq2_A Hypothetical protein LO 99.6 9.3E-15 3.2E-19 114.8 8.1 80 112-198 21-107 (114)
351 3d2w_A TAR DNA-binding protein 99.5 1.5E-14 5.2E-19 109.6 9.1 78 112-199 7-86 (89)
352 3egn_A RNA-binding protein 40; 99.5 3.1E-15 1.1E-19 124.3 5.6 86 113-199 42-132 (143)
353 2dit_A HIV TAT specific factor 99.5 6.2E-14 2.1E-18 111.2 12.9 79 230-308 12-103 (112)
354 2hzc_A Splicing factor U2AF 65 99.5 1.9E-14 6.6E-19 108.6 8.0 72 20-98 3-85 (87)
355 2pe8_A Splicing factor 45; RRM 99.5 6.1E-14 2.1E-18 109.4 10.5 82 114-196 6-93 (105)
356 2voo_A Lupus LA protein; RNA-b 99.5 8.9E-14 3E-18 121.3 11.0 115 74-196 63-186 (193)
357 1wf0_A TDP-43, TAR DNA-binding 99.5 3.9E-14 1.3E-18 107.2 6.8 79 114-200 3-81 (88)
358 3v4m_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 107.8 9.3 75 231-305 3-95 (105)
359 2bz2_A Negative elongation fac 99.5 1.6E-13 5.4E-18 110.2 10.2 79 112-199 35-113 (121)
360 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.3E-13 2.2E-17 102.3 11.8 75 233-309 10-92 (100)
361 3tht_A Alkylated DNA repair pr 99.4 2.3E-13 7.7E-18 127.9 10.0 76 230-305 15-97 (345)
362 1jmt_A Splicing factor U2AF 35 99.4 1E-13 3.5E-18 108.0 4.2 67 238-304 20-103 (104)
363 2dit_A HIV TAT specific factor 99.4 2.1E-12 7.1E-17 102.3 11.8 84 112-200 11-105 (112)
364 3ue2_A Poly(U)-binding-splicin 99.4 8.9E-13 3E-17 104.9 9.2 74 232-305 19-107 (118)
365 3u1l_A PRE-mRNA-splicing facto 99.4 5.4E-13 1.8E-17 119.0 8.8 77 20-104 131-228 (240)
366 3s6e_A RNA-binding protein 39; 99.4 1.9E-12 6.4E-17 102.2 10.1 75 231-305 5-91 (114)
367 3v4m_A Splicing factor U2AF 65 99.4 1E-12 3.4E-17 102.5 8.3 82 114-196 3-96 (105)
368 3ue2_A Poly(U)-binding-splicin 99.3 2.1E-12 7.2E-17 102.7 8.1 81 115-196 19-108 (118)
369 2dnr_A Synaptojanin-1; RRM dom 99.3 2.2E-11 7.5E-16 89.9 9.8 75 230-307 4-86 (91)
370 1owx_A Lupus LA protein, SS-B, 99.3 1.5E-11 5E-16 97.1 9.3 76 230-305 15-94 (121)
371 1jmt_A Splicing factor U2AF 35 99.3 1.3E-12 4.5E-17 101.7 3.2 71 28-99 20-102 (104)
372 2d9o_A DNAJ (HSP40) homolog, s 99.3 7E-11 2.4E-15 90.8 12.2 66 126-199 27-92 (100)
373 3tht_A Alkylated DNA repair pr 99.2 1.1E-11 3.8E-16 116.4 8.5 79 18-102 13-96 (345)
374 3s6e_A RNA-binding protein 39; 99.1 2.2E-10 7.6E-15 90.3 9.8 77 115-196 6-92 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 2.9E-10 1E-14 84.2 8.8 75 228-305 10-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.5E-09 5.1E-14 85.6 9.8 80 14-99 9-92 (121)
377 2dnr_A Synaptojanin-1; RRM dom 98.9 6.4E-09 2.2E-13 76.7 7.7 74 114-197 5-86 (91)
378 3dxb_A Thioredoxin N-terminall 98.8 6.6E-09 2.3E-13 92.5 6.9 61 245-305 141-211 (222)
379 2l9w_A U4/U6 snRNA-associated- 98.8 5.6E-08 1.9E-12 73.3 10.4 72 232-303 20-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.7 2.2E-08 7.5E-13 89.1 8.2 69 127-196 140-212 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.7 4.2E-08 1.4E-12 72.7 6.4 75 112-196 11-94 (95)
382 1wey_A Calcipressin 1; structu 98.3 3E-06 1E-10 63.9 9.0 75 233-307 5-84 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.2 9.5E-06 3.3E-10 61.3 9.8 73 114-193 19-96 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.0 5E-05 1.7E-09 56.9 10.4 74 115-197 7-84 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.9 0.0003 1E-08 52.7 12.3 72 232-306 7-83 (104)
386 1uw4_A UPF3X; nonsense mediate 97.6 0.00028 9.7E-09 52.2 8.8 69 24-92 2-72 (91)
387 1uw4_A UPF3X; nonsense mediate 97.6 0.00079 2.7E-08 49.8 10.1 73 234-306 2-87 (91)
388 1whv_A Poly(A)-specific ribonu 97.5 0.0004 1.4E-08 51.4 7.6 58 20-86 13-70 (100)
389 1wey_A Calcipressin 1; structu 97.5 0.00028 9.7E-09 53.1 6.6 73 23-103 5-82 (104)
390 1wwh_A Nucleoporin 35, nucleop 97.4 0.0007 2.4E-08 52.5 8.7 73 231-305 22-95 (119)
391 3ctr_A Poly(A)-specific ribonu 97.1 0.0011 3.7E-08 49.2 6.2 54 24-86 7-60 (101)
392 2l08_A Regulator of nonsense t 97.1 0.0009 3.1E-08 49.8 5.6 71 22-92 8-80 (97)
393 2l08_A Regulator of nonsense t 96.8 0.0031 1.1E-07 46.9 6.4 73 233-305 9-94 (97)
394 1whv_A Poly(A)-specific ribonu 96.6 0.016 5.4E-07 42.9 8.8 55 233-290 16-70 (100)
395 3p3d_A Nucleoporin 53; structu 96.5 0.0026 8.7E-08 50.0 4.4 71 233-305 7-97 (132)
396 3ctr_A Poly(A)-specific ribonu 96.5 0.0039 1.3E-07 46.3 5.0 55 233-290 6-60 (101)
397 1wwh_A Nucleoporin 35, nucleop 96.4 0.011 3.9E-07 45.7 7.8 73 114-195 22-95 (119)
398 3pq1_A Poly(A) RNA polymerase; 96.2 0.0031 1.1E-07 61.2 4.0 55 233-288 53-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.1 0.0027 9.3E-08 61.6 3.5 58 20-83 50-107 (464)
400 3p3d_A Nucleoporin 53; structu 93.8 0.076 2.6E-06 41.7 4.8 78 116-196 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 90.6 0.79 2.7E-05 45.2 8.7 57 22-87 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 86.3 2.5 8.4E-05 41.7 9.0 56 232-290 439-494 (507)
403 4eyt_A Telomerase associated p 63.4 38 0.0013 24.2 7.7 69 232-302 11-86 (129)
404 4eyt_A Telomerase associated p 48.0 72 0.0025 22.7 8.1 63 16-86 5-67 (129)
405 3fry_A Probable copper-exporti 45.8 58 0.002 21.6 6.1 56 233-289 6-61 (73)
406 2g0c_A ATP-dependent RNA helic 42.0 22 0.00076 24.4 3.3 59 244-305 12-75 (76)
407 3lpe_A Putative transcription 37.7 1.1E+02 0.0038 21.9 7.9 32 144-180 40-71 (92)
408 4a4j_A Pacszia, cation-transpo 31.7 1E+02 0.0035 19.7 5.7 55 234-288 4-61 (69)
409 3ts2_A Protein LIN-28 homolog 28.4 11 0.00037 30.2 -0.3 28 248-277 2-29 (148)
410 3dxs_X Copper-transporting ATP 26.7 1.3E+02 0.0046 19.5 6.1 56 234-289 4-63 (74)
411 1xn9_A 30S ribosomal protein S 26.2 1.8E+02 0.006 21.4 6.0 49 126-175 28-80 (101)
412 3lpe_A Putative transcription 25.7 1.7E+02 0.0059 20.8 5.9 35 259-293 39-74 (92)
413 4e8u_A Putative uncharacterize 22.7 1.4E+02 0.0049 24.3 5.3 47 25-74 14-71 (172)
414 1ywx_A 30S ribosomal protein S 22.2 1.8E+02 0.006 21.5 5.3 48 126-174 28-79 (102)
415 2v94_A RPS24, 30S ribosomal pr 20.5 2E+02 0.007 21.3 5.4 49 126-175 37-89 (107)
416 3h7h_B Transcription elongatio 20.3 90 0.0031 23.2 3.5 33 259-291 40-73 (106)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.2e-46 Score=349.71 Aligned_cols=242 Identities=18% Similarity=0.310 Sum_probs=218.8
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
..++++|||+|||+++++++|+++|+.|| |.+|++ +.++|||||+|.+.++|.+|++.|||..+.++.+.+..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34678999999999999999999999999 999988 34679999999999999999999999999996665543
Q ss_pred eccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh
Q 014513 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (423)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~ 179 (423)
+ ...++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|.+|++.+
T Consensus 92 --~-----------~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 92 --Q-----------PTDALLCVANLPPSLTQQQFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp --C-----------CCSCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --c-----------CCCCEEEEcCCCCcCCHHHHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 2 235789999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCC-CHHHHHHHhhhcC
Q 014513 180 NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNV-TEEELKQTFLHFG 258 (423)
Q Consensus 180 ~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-te~~L~~~F~~~G 258 (423)
+|..+.|++|.|.++.++... ......++|||+|||.++ |+++|+++|++||
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~~---------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQLT---------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp TTCEETTEECEEEECCGGGCC---------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred CCCEeCCcEEEEEECCCCCCC---------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 999999999999998764332 122456899999999995 9999999999999
Q ss_pred CeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 259 EIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 259 ~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
.|.++.|..+ +|+|||+|.+.++|.+|+..|||..|+|++|+|+|+.++..
T Consensus 211 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 211 SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999875 79999999999999999999999999999999999987644
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-45 Score=346.40 Aligned_cols=249 Identities=17% Similarity=0.336 Sum_probs=209.3
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
.+...++.++|||+|||+++++++|+++|+.||+|.+|+|++++. + ++|||||+|.+.++|.+|+ .++|..+.++.+
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAI-TKTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEE
Confidence 345677899999999999999999999999999999999999873 3 5799999999999999999 599999999766
Q ss_pred eEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHH
Q 014513 96 NFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 96 ~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g-~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~ 174 (423)
.+.. + ..++|||+|||+++++++|+++| +.|| .|..++++.++. |+++|||||+|.+.++|.+
T Consensus 111 ~v~~--~------------~~~~l~v~nlp~~~t~~~l~~~f-~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 111 IVSH--L------------TECTLWMTNFPPSYTQRNIRDLL-QDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp EEEE--C------------CSCEEEEECCCTTCCHHHHHHHH-HHTTCCCCEEECC--------CCEEEEECSSHHHHHH
T ss_pred EEEE--C------------CCCEEEEECCCCCCCHHHHHHHH-HHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHH
Confidence 5543 2 37889999999999999999999 8999 999999999876 8899999999999999999
Q ss_pred HHHhhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCC-CCHHHHHHH
Q 014513 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN-VTEEELKQT 253 (423)
Q Consensus 175 a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~te~~L~~~ 253 (423)
|+..|+|..+.|++|.|.++.+....... .......++|||+|||.. +|+++|+++
T Consensus 175 A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~ 231 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLVTKVSNPLEKSKRT-----------------------DSATLEGREIMIRNLSTELLDENLLRES 231 (292)
T ss_dssp HHHHHTTCEETTEECEEEECCCC--------------------------------CCTTTEEEEEEECTTTCCHHHHHHH
T ss_pred HHHHhCCCEeCCcEEEEEECCCCcccccc-----------------------cccCCCCceEEEECCCcccCCHHHHHHH
Confidence 99999999999999999998876543211 112345799999999999 999999999
Q ss_pred hhhcCCeEEEEEeCC-------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 254 FLHFGEIVNVKIPMG-------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 254 F~~~G~I~~v~i~~~-------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
|++||.|.+|.++.+ +|||||+|.+.++|.+|+ .|||+.|+|+.|+|+||+++
T Consensus 232 F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 232 FEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999999653 689999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.2e-35 Score=262.28 Aligned_cols=167 Identities=32% Similarity=0.523 Sum_probs=150.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++|+++|+++| +.||+|.+|+|++|+.|++++|||||+|.+.++|++|++.+++..+.|+.+++
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 34467899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC----
Q 014513 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM---- 267 (423)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~---- 267 (423)
.++....... ....++|||+|||.++|+++|+++|++||.|+++.|+.
T Consensus 90 ~~~~~~~~~~----------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~ 141 (213)
T 4f02_A 90 MWSQRDPSLR----------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 141 (213)
T ss_dssp EECCCCTHHH----------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE
T ss_pred cccccccccc----------------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC
Confidence 8876544321 11247899999999999999999999999999999976
Q ss_pred CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 268 GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 268 ~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
++|||||+|.+.++|++|++.|||+.|+|++|+|.+|+++
T Consensus 142 ~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 142 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 3799999999999999999999999999999999999864
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.7e-34 Score=255.46 Aligned_cols=173 Identities=30% Similarity=0.492 Sum_probs=150.6
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
...+.++|||+|||++++|++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.++.+.+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999665544
Q ss_pred eeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHh
Q 014513 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (423)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~ 178 (423)
++... .........+|||+|||+++++++|+++| +.||.|..++|++|. +.++|||||+|.+.++|.+|++.
T Consensus 91 --~~~~~---~~~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 91 --WSQRD---PSLRKSGVGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp --ECCCC---THHHHHCTTEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHH
T ss_pred --ccccc---ccccccccccceECCcccccHHHHHHHHH-hhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHH
Confidence 33211 11112245689999999999999999999 899999999999985 45899999999999999999999
Q ss_pred hCCceecCcceEEecccCCCc
Q 014513 179 MNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 179 ~~g~~~~g~~i~v~~a~~~~~ 199 (423)
|||..+.|++|.|.++.++..
T Consensus 163 lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 163 MNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HTTCEETTEECEEEECCCHHH
T ss_pred hCCCEECCEEEEEEEcCCCcc
Confidence 999999999999999987543
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.9e-33 Score=246.90 Aligned_cols=175 Identities=24% Similarity=0.434 Sum_probs=147.8
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.......++|||+|||+++|+++|+++| +.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 3345568899999999999999999999 8999999999999999999999999999999999999985 9999999999
Q ss_pred EEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-
Q 014513 190 RISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG- 268 (423)
Q Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~- 268 (423)
.|.++.+...... .......++|||+|||.++|+++|+++|++||.|..+.+..+
T Consensus 85 ~v~~~~~~~~~~~------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 85 EPKRAVSREDSQR------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp EEEECCC-----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred eeecccCcccccc------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 9999876543210 112234689999999999999999999999999999999864
Q ss_pred -----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCCC
Q 014513 269 -----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (423)
Q Consensus 269 -----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 311 (423)
+|||||+|.+.++|.+|+.. +|+.|+|+.|+|++|.++....
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 68999999999999999987 7999999999999999765543
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.5e-33 Score=245.73 Aligned_cols=182 Identities=20% Similarity=0.382 Sum_probs=152.2
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
..+.++++.++|||+|||+++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++. ++..+.++.
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 3456778899999999999999999999999999999999999998999999999999999999999965 889999876
Q ss_pred ceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHH
Q 014513 95 QNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 95 ~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~ 174 (423)
+.+........ ........+.++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|.+
T Consensus 84 l~v~~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 84 VEPKRAVSRED-SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp CEEEECCC------------CCSEEEEECCTTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred eeeecccCccc-ccccccCCCcceEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 66655433211 1122233456899999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhCCceecCcceEEecccCCCcc
Q 014513 175 AMTEMNGVFCSTRPMRISAATPKKTT 200 (423)
Q Consensus 175 a~~~~~g~~~~g~~i~v~~a~~~~~~ 200 (423)
|+.. ++..+.|+.|.|.++.++...
T Consensus 162 A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 162 IVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHC-SCCEETTEECEEEECC-----
T ss_pred HHHh-CCcEECCEEEEEEecCChhHh
Confidence 9986 899999999999999887654
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=238.67 Aligned_cols=165 Identities=33% Similarity=0.547 Sum_probs=150.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccc
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~ 103 (423)
|+|||+|||+++++++|+++|++||.|.+|++++++ ++.++|||||+|.+.++|.+|++.|+|..+.++.+.+.. +.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~--~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW--AF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE--CC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE--cC
Confidence 789999999999999999999999999999999997 688999999999999999999999999999986655544 43
Q ss_pred cCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCce
Q 014513 104 FGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (423)
Q Consensus 104 ~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~ 183 (423)
.. ......+.++|||+|||.++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|.+|++.|||..
T Consensus 78 ~~---~~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QS---QQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CC---CCCCCTTCEEEEEESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CC---CCCCCCCCceEEECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 22 22345567899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ecCcceEEeccc
Q 014513 184 CSTRPMRISAAT 195 (423)
Q Consensus 184 ~~g~~i~v~~a~ 195 (423)
+.|++|+|.+|.
T Consensus 154 ~~g~~i~v~~a~ 165 (166)
T 3md3_A 154 LNGRPLRINWAA 165 (166)
T ss_dssp ETTEECEEEESC
T ss_pred cCCcEEEEEecC
Confidence 999999999985
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.2e-33 Score=239.05 Aligned_cols=159 Identities=29% Similarity=0.504 Sum_probs=148.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
++++|||+|||+++++++|+++| +.||.|.++++++++.+|+++|||||+|.+.++|.+|++.+++..+.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 46889999999999999999999 89999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------ 268 (423)
.+.... ...++|||+|||..+|+++|+++|++||.|.++.+..+
T Consensus 81 ~~~~~~------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 130 (168)
T 1b7f_A 81 RPGGES------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRP 130 (168)
T ss_dssp CCCSST------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCE
T ss_pred CCCccc------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCc
Confidence 765431 34689999999999999999999999999999999875
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCc--eEEEEEEc
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWG 304 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~a 304 (423)
+|+|||+|.+.++|.+|++.|||..++| ++|+|+||
T Consensus 131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 4899999999999999999999999977 99999986
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-33 Score=237.28 Aligned_cols=160 Identities=27% Similarity=0.517 Sum_probs=146.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
++|||+|||+++++++|+++| +.||.|.++++++++. ++++|||||+|.+.++|.+|++.+++..+.|++|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYF-QVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHH-GGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHH-HhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 579999999999999999999 8999999999999975 78999999999999999999999999999999999999866
Q ss_pred CCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------Cc
Q 014513 197 KKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RG 270 (423)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g 270 (423)
.... .....++|||+|||..+|+++|+++|++||.|.++.+..+ +|
T Consensus 79 ~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 130 (166)
T 3md3_A 79 SQQS----------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRG 130 (166)
T ss_dssp CCCC----------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEE
T ss_pred CCCC----------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcce
Confidence 5431 2245689999999999999999999999999999999854 68
Q ss_pred EEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 271 CGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 271 ~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
+|||+|.+.++|.+|+..|||..|+|++|+|+||++
T Consensus 131 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 131 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999999873
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=5.1e-33 Score=249.24 Aligned_cols=175 Identities=18% Similarity=0.375 Sum_probs=151.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
+.++|||+|||+++++++|+++| +.||.|.+|++++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35789999999999999999999 99999999999999989999999999999999999999999999999999999887
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------ 268 (423)
.............. ......++|||+|||.++|+++|+++|++||.|+++.+..+
T Consensus 106 ~~~~~~~~~~~~~~-------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 106 SNIGQAQPIIDQLA-------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH 166 (216)
T ss_dssp SCCGGGHHHHHHHH-------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE
T ss_pred CCccccchhhhhhh-------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 66543221110000 01134689999999999999999999999999999999875
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
+|||||+|.+.++|.+|++.|||..|+|+.|+|.++.++..
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 79999999999999999999999999999999999996643
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=9.8e-33 Score=236.94 Aligned_cols=159 Identities=29% Similarity=0.583 Sum_probs=147.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
+.++|||+|||+++++++|+++| +.||.|.++++++++.+|+++|||||+|.+.++|.+|++.+++..+.|++|.|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 35789999999999999999999 89999999999999989999999999999999999999999999999999999998
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------ 268 (423)
.+.... ...++|||+|||..+|+++|+++|++||.|.++.+..+
T Consensus 80 ~~~~~~------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 129 (167)
T 1fxl_A 80 RPSSAS------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 129 (167)
T ss_dssp CCCCGG------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCccc------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc
Confidence 765432 23588999999999999999999999999999999764
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCceE--EEEEEc
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQ--VRISWG 304 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~--l~v~~a 304 (423)
+|+|||+|.+.++|.+|++.|||..++|+. |+|+||
T Consensus 130 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 130 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 699999999999999999999999999964 888886
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.9e-34 Score=254.51 Aligned_cols=180 Identities=23% Similarity=0.394 Sum_probs=155.9
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...++.++|||+|||+++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|++.|++..|.++.+.+
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 45677899999999999999999999999999999999999889999999999999999999999999999999977665
Q ss_pred eeeccccCCCCC------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHH
Q 014513 98 RLNWASFGIGEK------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171 (423)
Q Consensus 98 ~~~~a~~~~~~~------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~ 171 (423)
. ++....... .......++|||+|||.++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++
T Consensus 103 ~--~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 103 G--RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp E--CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred e--cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 4 332111000 0112356899999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceecCcceEEecccCCCcc
Q 014513 172 RNRAMTEMNGVFCSTRPMRISAATPKKTT 200 (423)
Q Consensus 172 a~~a~~~~~g~~~~g~~i~v~~a~~~~~~ 200 (423)
|.+|++.|||..+.|+.|+|.++.++...
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999999876543
No 13
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2e-32 Score=235.34 Aligned_cols=165 Identities=25% Similarity=0.453 Sum_probs=150.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
+.++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|+|..+.++.+.+ .|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v--~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV--SY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE--EE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE--Ee
Confidence 4689999999999999999999999999999999999889999999999999999999999999999999865554 45
Q ss_pred cccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCC
Q 014513 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (423)
Q Consensus 102 a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g 181 (423)
+... ....+.++|||+|||.++++++|+++| +.||.|..+++++++.+++++|||||+|.+.++|.+|++.|||
T Consensus 80 ~~~~-----~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPG-----GESIKDTNLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCC-----SSTTTTCEEEEESCCTTCCHHHHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCC-----cccCCCCCEEEeCCCCCCCHHHHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 4322 234457899999999999999999999 9999999999999998999999999999999999999999999
Q ss_pred ceecC--cceEEecc
Q 014513 182 VFCST--RPMRISAA 194 (423)
Q Consensus 182 ~~~~g--~~i~v~~a 194 (423)
..+.| ++|+|.+|
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99977 99999875
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.6e-32 Score=234.25 Aligned_cols=164 Identities=29% Similarity=0.463 Sum_probs=148.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeecc
Q 014513 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (423)
Q Consensus 23 ~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a 102 (423)
.++|||+|||+++++++|+++|+.||.|.+|++++++.+|.++|||||+|.++++|.+|++.|+|..+.++.+.+. ++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~--~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE--EC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE--ec
Confidence 5899999999999999999999999999999999999899999999999999999999999999999998665554 44
Q ss_pred ccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCc
Q 014513 103 SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (423)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~ 182 (423)
.. .......++|||+|||.++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 80 ~~-----~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RP-----SSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CC-----CCGGGTTCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CC-----CcccCCCCcEEECCCCCcCCHHHHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 32 1233456789999999999999999999 89999999999999989999999999999999999999999999
Q ss_pred eecCcc--eEEecc
Q 014513 183 FCSTRP--MRISAA 194 (423)
Q Consensus 183 ~~~g~~--i~v~~a 194 (423)
.+.|+. |+|.+|
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 777764
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=6.6e-32 Score=233.67 Aligned_cols=168 Identities=21% Similarity=0.390 Sum_probs=149.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC--CCcceEEEEEcCHHHHHHHHHHcCCCCCC-CccceEe
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITG--QPEGYGFVEFVSHAAAERVLQTYNGTPMP-GTEQNFR 98 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g--~~~g~afVeF~~~~~A~~al~~l~g~~~~-~~~~~v~ 98 (423)
+.++|||+|||+++++++|+++|++||+|.+|++++++.++ .++|||||+|.+.++|.+|++.|+|..+. +....+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 67899999999999999999999999999999999998776 89999999999999999999999998765 4456666
Q ss_pred eeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHh
Q 014513 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (423)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~ 178 (423)
+.++.... ......++|||+|||+++++++|+++| +.||.|..+++++++ +|+++|||||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEK----NNAVEDRKLFIGMISKKCTENDIRVMF-SSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGC----CSCGGGSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eccccccc----cccCCCCeEEEcCCCCcCCHHHHHHHH-HhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 66654322 233467889999999999999999999 899999999999996 599999999999999999999999
Q ss_pred hCCceec---CcceEEeccc
Q 014513 179 MNGVFCS---TRPMRISAAT 195 (423)
Q Consensus 179 ~~g~~~~---g~~i~v~~a~ 195 (423)
|||..+. +++|.|.+|+
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998775 4999999874
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.3e-33 Score=238.34 Aligned_cols=166 Identities=28% Similarity=0.513 Sum_probs=147.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
+++++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++. +..+.|+.+.+.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~-- 76 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK-- 76 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE--
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc--
Confidence 4789999999999999999999999999999999999988999999999999999999999984 556777554443
Q ss_pred ccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 101 WASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
++.. +....+.++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|.+|++ ++
T Consensus 77 ~~~~-----~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 77 RAIP-----RDEQDKTGKIFVGGIGPDVRPKEFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp ECCC-----HHHHHHCEEEEEEEECTTCCHHHHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred cccc-----hhhccCCCeEEECCCCCCCCHHHHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 3321 1122346789999999999999999999 899999999999999899999999999999999999998 89
Q ss_pred CceecCcceEEecccCC
Q 014513 181 GVFCSTRPMRISAATPK 197 (423)
Q Consensus 181 g~~~~g~~i~v~~a~~~ 197 (423)
+..+.|++|.|.++.++
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999999875
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=6.3e-32 Score=233.80 Aligned_cols=161 Identities=27% Similarity=0.485 Sum_probs=144.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCC--CCcceEEEEeCCHHHHHHHHHhhCCceec---Ccce
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG--RSKGYGFVKFLDENERNRAMTEMNGVFCS---TRPM 189 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg--~~~G~afV~f~~~~~a~~a~~~~~g~~~~---g~~i 189 (423)
..++|||+|||+++++++|+++| +.||.|.++++++++.++ +++|||||+|.+.++|++|++.+++..+. ++++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 46789999999999999999999 899999999999999887 89999999999999999999999998875 6777
Q ss_pred EEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-
Q 014513 190 RISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG- 268 (423)
Q Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~- 268 (423)
.+.++.+.... ....++|||+|||.++|+++|+++|++||.|.++.+..+
T Consensus 81 ~~~~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 81 QMKPADSEKNN-----------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp EEEECGGGCCS-----------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred EEccccccccc-----------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 77766543321 234689999999999999999999999999999999875
Q ss_pred ----CcEEEEEeCChHHHHHHHHHhCCeEeC---ceEEEEEEcc
Q 014513 269 ----RGCGFVQFAARASAEEAILRMQGHMIG---QQQVRISWGR 305 (423)
Q Consensus 269 ----~g~aFV~F~~~~~A~~Al~~l~g~~i~---g~~l~v~~a~ 305 (423)
+|||||+|.+.++|.+|++.|||..+. +++|+|+||.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 132 DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 799999999999999999999998865 4999999984
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=1.9e-32 Score=235.40 Aligned_cols=159 Identities=25% Similarity=0.492 Sum_probs=144.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
++++|||+|||+++|+++|+++| +.||.|.++++++++.+|+++|||||+|.+.++|.+|++ ++..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYF-GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHH-TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 46889999999999999999999 999999999999999999999999999999999999998 467889999998887
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------
Q 014513 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (423)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------ 268 (423)
.++... ...++|||+|||.++|+++|+++|++||.|.++.+..+
T Consensus 79 ~~~~~~------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~ 128 (167)
T 2cjk_A 79 IPRDEQ------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 128 (167)
T ss_dssp CCHHHH------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT
T ss_pred cchhhc------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc
Confidence 653221 12578999999999999999999999999999999864
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
+|||||+|.+.++|.+|++ ++|..|+|+.|+|.||.++
T Consensus 129 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 5899999999999999998 8999999999999999865
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=3.5e-31 Score=239.49 Aligned_cols=190 Identities=23% Similarity=0.364 Sum_probs=151.5
Q ss_pred CCCCCceEEEeCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 112 DAGPEHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~-~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
...+.++|||+|||+ ++++++|+++| +.||.|.+|++++++ +|||||+|.+.++|++|++.+++..+.|++|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F-~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHH-HHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 445678999999999 99999999999 899999999999875 78999999999999999999999999999999
Q ss_pred EecccCCCcccchhh---hhhhc--ccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcC-CeEEEE
Q 014513 191 ISAATPKKTTGFQQQ---YAAVK--ATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG-EIVNVK 264 (423)
Q Consensus 191 v~~a~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G-~I~~v~ 264 (423)
|.++.+......... ..... ...+......+..........+.++|||+|||..+|+++|+++|++|| .|.++.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 999876532111000 00000 000000111111111122335579999999999999999999999999 999999
Q ss_pred E-eCCCcEEEEEeCChHHHHHHHHHhCCeEeC-ceEEEEEEcccC
Q 014513 265 I-PMGRGCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGRKQ 307 (423)
Q Consensus 265 i-~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~-g~~l~v~~a~~~ 307 (423)
+ +.++|+|||+|.+.++|.+|++.|||..|+ |+.|+|+|++++
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9 448999999999999999999999999999 999999999854
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=9.2e-31 Score=244.42 Aligned_cols=191 Identities=25% Similarity=0.376 Sum_probs=151.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~----~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
++..++++|||+|||+++++++|+ ++| +.||.|.+|++++ +++++|||||+|.+.++|.+|++.|||..+.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-hccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 345678999999999999999976 899 8999999999886 58899999999999999999999999999999
Q ss_pred cceEEecccCCCcccchhhh-----------------------hhhc--ccC------CCC-------------------
Q 014513 187 RPMRISAATPKKTTGFQQQY-----------------------AAVK--ATY------PVA------------------- 216 (423)
Q Consensus 187 ~~i~v~~a~~~~~~~~~~~~-----------------------~~~~--~~~------~~~------------------- 216 (423)
+.|+|.++............ .... ... +..
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 99999998665431000000 0000 000 000
Q ss_pred -------CCCC-C-----------------------CccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEE
Q 014513 217 -------AYTT-P-----------------------VQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKI 265 (423)
Q Consensus 217 -------~~~~-~-----------------------~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i 265 (423)
.... + ..........+.++|||+|||..+|+++|+++|++||.|++|.+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 0000 0 00001123446789999999999999999999999999999999
Q ss_pred eCCC-cEEEEEeCChHHHHHHHHHhCCeEeC-ceEEEEEEcc
Q 014513 266 PMGR-GCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGR 305 (423)
Q Consensus 266 ~~~~-g~aFV~F~~~~~A~~Al~~l~g~~i~-g~~l~v~~a~ 305 (423)
..++ |||||+|.+.++|.+|++.|||..|+ |+.|+|+||+
T Consensus 240 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9876 99999999999999999999999999 9999999987
No 21
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=8.7e-32 Score=233.15 Aligned_cols=165 Identities=22% Similarity=0.393 Sum_probs=145.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
....+.++|||+|||+++++++|+++| +.||.+.. .++.+..+++++|||||+|.+.++|.+|++ +++..+.|++|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 345568999999999999999999999 89988877 455566679999999999999999999995 999999999999
Q ss_pred EecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEe--CC
Q 014513 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP--MG 268 (423)
Q Consensus 191 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~--~~ 268 (423)
|.++.++... .....++|||+|||.++|+++|+++|++||.|..+ .. .+
T Consensus 85 v~~~~~~~~~----------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~ 135 (175)
T 1fje_B 85 LEKPKGRDSK----------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKS 135 (175)
T ss_dssp EECCCCSSCS----------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSC
T ss_pred EecCCCcccc----------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCC
Confidence 9998765432 12346899999999999999999999999999888 22 25
Q ss_pred CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 269 ~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
+|||||+|.+.++|.+|+..|||+.|+|+.|+|+||+++
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 136 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 799999999999999999999999999999999999865
No 22
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.7e-31 Score=234.72 Aligned_cols=177 Identities=15% Similarity=0.351 Sum_probs=143.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCC-----------CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCce
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYP-----------SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g-----------~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~ 183 (423)
..++|||+|||+++++++|+++| +.|| .|.++.+ ++++|||||+|.+.++|++|+ .+||..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F-~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHH-HHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHH-HHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 36889999999999999999999 8994 4444444 567899999999999999999 799999
Q ss_pred ecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEE
Q 014513 184 CSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263 (423)
Q Consensus 184 ~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v 263 (423)
+.|++|.|.++............ .....+ ...........++|||+|||..+|+++|+++|++||.|.++
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~ 144 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSEN---------PSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF 144 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSC---------SSCCCT-TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEE
T ss_pred EcCceEEEeCCCCCCCCCCCcCC---------CcCCCC-CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEE
Confidence 99999999988765432211000 000000 11112233567999999999999999999999999999999
Q ss_pred EEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 264 KIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 264 ~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|++++++..
T Consensus 145 ~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 145 NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99865 69999999999999999999999999999999999987643
No 23
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=6.8e-31 Score=232.23 Aligned_cols=186 Identities=23% Similarity=0.368 Sum_probs=148.9
Q ss_pred CceEEEeCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 116 EHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 116 ~~~l~vgnLp~-~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
+++|||+|||+ ++++++|+++| +.||.|.+|++++++ +|||||+|.+.++|.+|++.++|..+.|++|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F-~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHH-HTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 57899999999 99999999999 899999999998874 789999999999999999999999999999999998
Q ss_pred cCCCcccchhhh---hhhc--ccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeC-
Q 014513 195 TPKKTTGFQQQY---AAVK--ATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG-EIVNVKIPM- 267 (423)
Q Consensus 195 ~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G-~I~~v~i~~- 267 (423)
............ .... ...+......+..........+.++|||+|||..+|+++|+++|++|| .|.++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 765322111000 0000 000000111111111122335679999999999999999999999999 999999954
Q ss_pred CCcEEEEEeCChHHHHHHHHHhCCeEeC-ceEEEEEEcccC
Q 014513 268 GRGCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGRKQ 307 (423)
Q Consensus 268 ~~g~aFV~F~~~~~A~~Al~~l~g~~i~-g~~l~v~~a~~~ 307 (423)
++|+|||+|.+.++|.+|+..|||..|+ |++|+|+|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7999999999999999999999999999 999999999854
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.5e-30 Score=224.65 Aligned_cols=160 Identities=23% Similarity=0.476 Sum_probs=142.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHT----G-------EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP 89 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~ 89 (423)
++.++|||+|||+++++++|+++|++| | .|.++++.+ ++|||||+|.++++|.+|+ .+||..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 578999999999999999999999999 7 777777654 4699999999999999999 899999
Q ss_pred CCCccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCH
Q 014513 90 MPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169 (423)
Q Consensus 90 ~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~ 169 (423)
+.++.+.+. ++.. .......++|||+|||+++++++|+++| +.||.|..+++++++.+|+++|||||+|.+.
T Consensus 75 ~~g~~i~v~--~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 FQGQSLKIR--RPHD-----YQPLPGAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp ETTEECEEE--CCSS-----CCCCTTTTCEEEECCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred ecCceeeec--CCcc-----cCCCCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 999665554 4321 1223447889999999999999999999 8999999999999998999999999999999
Q ss_pred HHHHHHHHhhCCceecCcceEEeccc
Q 014513 170 NERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 170 ~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
++|.+|++.|||..+.|++|.|.+|.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999874
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2e-30 Score=229.65 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=141.7
Q ss_pred CCceEEEeCCC-CCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 115 PEHSIFVGDLA-PDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 115 ~~~~l~vgnLp-~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
+.++|||+||| +++++++|+++| +.||.|.+|+|+++ ++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F-~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVF-CLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHH-TTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHH-HhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46789999999 899999999999 99999999999875 379999999999999999999999999999999999
Q ss_pred ccCCCcccchh-hhhhhc---ccCCC---CCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCe--EEEE
Q 014513 194 ATPKKTTGFQQ-QYAAVK---ATYPV---AAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI--VNVK 264 (423)
Q Consensus 194 a~~~~~~~~~~-~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I--~~v~ 264 (423)
+.......... ...... ..+.. .....+..........+.++|||+|||.++|+++|+++|++||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 86543211000 000000 00000 000000000011123456899999999999999999999999999 8999
Q ss_pred EeCC----CcEEEEEeCChHHHHHHHHHhCCeEeCce----EEEEEEc
Q 014513 265 IPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQ----QVRISWG 304 (423)
Q Consensus 265 i~~~----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~----~l~v~~a 304 (423)
+..+ +|+|||+|.+.++|.+||..|||+.|+|+ ++.|++|
T Consensus 157 ~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8765 48999999999999999999999999877 5777664
No 26
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.2e-30 Score=223.57 Aligned_cols=153 Identities=16% Similarity=0.428 Sum_probs=137.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhC----C-------CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCce
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQY----P-------SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~----g-------~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~ 183 (423)
+.++|||+|||+++|+++|+++| +.| | .|.++++ ++++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F-~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHH-HHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 46899999999999999999999 888 6 6666655 355899999999999999999 899999
Q ss_pred ecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEE
Q 014513 184 CSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263 (423)
Q Consensus 184 ~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v 263 (423)
+.|++|.|.++...... ...++|||+|||..+|+++|+++|++||.|.++
T Consensus 75 ~~g~~i~v~~~~~~~~~------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 124 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF 124 (172)
T ss_dssp ETTEECEEECCSSCCCC------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred ecCceeeecCCcccCCC------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEE
Confidence 99999999886553321 236899999999999999999999999999999
Q ss_pred EEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 264 KIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 264 ~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
.+..+ +|+|||+|.+.++|.+|++.|||..|+|++|+|+||.
T Consensus 125 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 125 NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99875 6999999999999999999999999999999999973
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=5.3e-30 Score=226.36 Aligned_cols=169 Identities=22% Similarity=0.430 Sum_probs=144.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHT----G-------EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP 89 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~ 89 (423)
+.+|+|||+|||+++++++|+++|++| | .|.++++. .++|||||+|.+.++|.+|+ .|||..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 467999999999999999999999999 5 56666653 45799999999999999999 899999
Q ss_pred CCCccceEeeeccccCCCC---------------CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC
Q 014513 90 MPGTEQNFRLNWASFGIGE---------------KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN 154 (423)
Q Consensus 90 ~~~~~~~v~~~~a~~~~~~---------------~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~ 154 (423)
|.++.+.+. ++...... ......+.++|||+|||+++++++|+++| +.||.|..++++.++.
T Consensus 75 ~~g~~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 FQGQSLKIR--RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSA 151 (198)
T ss_dssp ETTEEEEEE--CCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHH-HTBSCEEEEEEEECTT
T ss_pred EcCceEEEe--CCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccEEEEeecCC
Confidence 999665554 44322110 11122467899999999999999999999 8999999999999998
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 155 TGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 155 tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999987654
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.4e-29 Score=224.15 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=137.6
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 22 EVRTLWIGDLQ-YWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 22 ~~r~l~V~nLp-~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
+.++|||+||| +.+++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.|||..+.|+.+.|...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 79999999999999999999999875 3799999999999999999999999999977666553
Q ss_pred ccccC-CC--------------------CC---------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCe--eEEE
Q 014513 101 WASFG-IG--------------------EK---------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV--RGAK 148 (423)
Q Consensus 101 ~a~~~-~~--------------------~~---------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v--~~v~ 148 (423)
..... .. .+ .....+.++|||+|||+++|+++|+++| +.||.| ..++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F-~~~G~v~~~~v~ 156 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC-DELGVKRPTSVK 156 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHH-HHHTCCCCSEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH-HhcCCcceEEEE
Confidence 21110 00 00 0012356789999999999999999999 899999 8999
Q ss_pred EeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc----ceEEecc
Q 014513 149 VVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR----PMRISAA 194 (423)
Q Consensus 149 i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~----~i~v~~a 194 (423)
++.++ +.++|+|||+|.+.++|.+|+..|||..+.++ ++.|+++
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 98875 56679999999999999999999999999776 5666543
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.9e-30 Score=224.69 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=143.3
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...++.++|||+|||+++++++|+++|+.||.+..+ ++.+..++.++|||||+|.+.++|.+|+ .|||..+.++.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l-- 83 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEI-- 83 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEE--
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEE--
Confidence 466789999999999999999999999999987663 3444457889999999999999999999 599999998654
Q ss_pred eeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 014513 98 RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (423)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~ 177 (423)
++.++... ......+.++|||+|||+++++++|+++| +.||.|..+ ..+++++|||||+|.+.++|.+|++
T Consensus 84 ~v~~~~~~---~~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 84 KLEKPKGR---DSKKVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp EEECCCCS---SCSTTGGGGEEEEESCCSSCCHHHHHHHC-TTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred EEecCCCc---cccccccCCEEEEeCCCCCCCHHHHHHHH-HhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 55555322 22234467899999999999999999999 899987665 4678999999999999999999999
Q ss_pred hhCCceecCcceEEecccCC
Q 014513 178 EMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 178 ~~~g~~~~g~~i~v~~a~~~ 197 (423)
.|||..+.|++|.|.++.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999775
No 30
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3e-29 Score=234.39 Aligned_cols=174 Identities=18% Similarity=0.297 Sum_probs=156.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
..++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+.++.+ .+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i--~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL--YVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC--EEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE--EEEE
Confidence 45789999999999999999999999999999999999899999999999999999999999999999998654 4555
Q ss_pred cccCCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 102 ASFGIGEKRPDAGPEHSIFVGDLAPDV-TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 102 a~~~~~~~~~~~~~~~~l~vgnLp~~~-t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
+.... ........++|||+|||+++ ++++|+++| +.||.|..++|+.++ +|+++|+|||+|.+.++|.+|+..||
T Consensus 172 a~~~~--~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQ--LTPALLHSRCLCVDRLPPGFNDVDALCRAL-SAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGG--CCTTTTSCSEEEEECCCTTCCCHHHHHHHT-CSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCC--CCcccCCccEEEEecCCcccCCHHHHHHHh-hCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 54332 22344567889999999996 999999999 999999999999987 69999999999999999999999999
Q ss_pred CceecCcceEEecccCCCccc
Q 014513 181 GVFCSTRPMRISAATPKKTTG 201 (423)
Q Consensus 181 g~~~~g~~i~v~~a~~~~~~~ 201 (423)
|..+.|++|.|.++.++....
T Consensus 248 g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TCEETTEECEEEECCSSSCHH
T ss_pred CCccCCeEEEEEEecCCCccc
Confidence 999999999999998876643
No 31
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.3e-29 Score=236.20 Aligned_cols=173 Identities=17% Similarity=0.295 Sum_probs=144.5
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
....++|||+|||+.+++++|+++|+.|| .|.+|++++++ .|.++|||||+|.+.++|.+|++.|+|..+.++.+.+
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v- 191 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT- 191 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE-
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE-
Confidence 34678999999999999999999999999 99999999987 4889999999999999999999999999999955544
Q ss_pred eeccccCCCCCC--CCCCCCceEEEeCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeCCC-CCCCcceEEEEeCCHHHHHH
Q 014513 99 LNWASFGIGEKR--PDAGPEHSIFVGDLAPD-VTDYLLQETFRSQYPSVRGAKVVTDPN-TGRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 99 ~~~a~~~~~~~~--~~~~~~~~l~vgnLp~~-~t~~~l~~~F~~~~g~v~~v~i~~~~~-tg~~~G~afV~f~~~~~a~~ 174 (423)
.++.......+ ....+.++|||+|||++ +++++|+++| +.||.|..++|+++.. ||+++|||||+|.+.++|.+
T Consensus 192 -~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~ 269 (292)
T 2ghp_A 192 -KVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 269 (292)
T ss_dssp -EECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHH
T ss_pred -EECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHH
Confidence 55543322222 24456789999999999 9999999999 8999999999999877 69999999999999999999
Q ss_pred HHHhhCCceecCcceEEecccCC
Q 014513 175 AMTEMNGVFCSTRPMRISAATPK 197 (423)
Q Consensus 175 a~~~~~g~~~~g~~i~v~~a~~~ 197 (423)
|+ .|||..+.|++|.|.++.++
T Consensus 270 A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 270 AL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HG-GGTTEEETTEEEEEEECCCC
T ss_pred HH-HhcCCEECCcEEEEEEecCC
Confidence 99 99999999999999999875
No 32
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.6e-28 Score=229.14 Aligned_cols=169 Identities=21% Similarity=0.375 Sum_probs=143.8
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLS----SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~ 93 (423)
.+.++.++|||+|||+++++++|+ ++|++||.|.+|+|++ +++++|||||+|.+.++|.+|++.|||..|.++
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 356778999999999999999977 8999999999999886 678999999999999999999999999999996
Q ss_pred cceEeeeccccCCC------------------------------------------------------------------
Q 014513 94 EQNFRLNWASFGIG------------------------------------------------------------------ 107 (423)
Q Consensus 94 ~~~v~~~~a~~~~~------------------------------------------------------------------ 107 (423)
.+.|..........
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 66655432211100
Q ss_pred --------------------------------------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEE
Q 014513 108 --------------------------------------EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKV 149 (423)
Q Consensus 108 --------------------------------------~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i 149 (423)
.......+.++|||+|||.++++++|+++| +.||.|.++++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F-~~~G~i~~v~~ 239 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLF-NQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHH-HhcCCeEEEEE
Confidence 000122356789999999999999999999 89999999999
Q ss_pred eeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec-CcceEEeccc
Q 014513 150 VTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAAT 195 (423)
Q Consensus 150 ~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~-g~~i~v~~a~ 195 (423)
+.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|.++.
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9664 589999999999999999999999998 9999999874
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.7e-28 Score=220.53 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=143.7
Q ss_pred CCcCCccEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 18 MTLEEVRTLWIGDLQY-WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~-~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
....+.++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|++.|+|..+.++.+.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456789999999999 99999999999999999999999875 78999999999999999999999999997666
Q ss_pred EeeeccccCCCCC----------------------------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCC-CeeEE
Q 014513 97 FRLNWASFGIGEK----------------------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGA 147 (423)
Q Consensus 97 v~~~~a~~~~~~~----------------------------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g-~v~~v 147 (423)
|...........+ .....+.++|||+|||+++++++|+++| +.|| .|..+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHH-HTTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHH-HHcCCCeeEE
Confidence 6543322100000 0112346889999999999999999999 8999 99999
Q ss_pred EEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec-CcceEEecccCC
Q 014513 148 KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAATPK 197 (423)
Q Consensus 148 ~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~-g~~i~v~~a~~~ 197 (423)
+++.+ .+|||||+|.+.++|.+|++.|||..+. |++|+|.++.++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99763 3789999999999999999999999999 999999998764
No 34
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.6e-28 Score=215.67 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=141.3
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 22 EVRTLWIGDLQY-WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 22 ~~r~l~V~nLp~-~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
..++|||+|||+ .+++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+.++.+.+...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998875 789999999999999999999999999977766553
Q ss_pred ccccCCCCC----------------------------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCC-CeeEEEEee
Q 014513 101 WASFGIGEK----------------------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVT 151 (423)
Q Consensus 101 ~a~~~~~~~----------------------------~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g-~v~~v~i~~ 151 (423)
........+ .....+.++|||+|||.++++++|+++| +.|| .|..++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHH-HHTTSCCCEEEESS
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHH-HHcCCCceEEEEEe
Confidence 322100000 0112357889999999999999999999 8999 999999976
Q ss_pred CCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec-CcceEEecccCC
Q 014513 152 DPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAATPK 197 (423)
Q Consensus 152 ~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~-g~~i~v~~a~~~ 197 (423)
+ .+|+|||+|.+.++|.+|+..|||..+. |++|+|.++.++
T Consensus 156 ~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4 2789999999999999999999999999 999999998764
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.4e-28 Score=224.23 Aligned_cols=160 Identities=28% Similarity=0.466 Sum_probs=142.5
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
....+.++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|||..+.++.+.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 44567889999999999999999999999999999999654 599999999999999999999999999865554
Q ss_pred eeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHH
Q 014513 98 RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (423)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~ 177 (423)
.++. +..+|||+|||+++|+++|+++| +.||.|..|+|+.+ .+|+++|||||+|.+.++|.+|+.
T Consensus 91 --~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 91 --RFAT-----------HGAALTVKNLSPVVSNELLEQAF-SQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp --EECC-----------CSSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred --eecc-----------cCCcccccCCCCCCCHHHHHHHH-HhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH
Confidence 4442 25689999999999999999999 89999999999999 589999999999999999999999
Q ss_pred hh-CCceec---CcceEEecccCCC
Q 014513 178 EM-NGVFCS---TRPMRISAATPKK 198 (423)
Q Consensus 178 ~~-~g~~~~---g~~i~v~~a~~~~ 198 (423)
.| ++..+. +++|.|.++.+..
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HhcCCeEEecCCCceEEEeeccccC
Confidence 99 555554 9999999987653
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=4.1e-28 Score=223.69 Aligned_cols=154 Identities=29% Similarity=0.487 Sum_probs=139.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++|+++|+++| +.||.|.+|++.+ ++|||||+|.+.++|.+|+..++|..+.|++|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLF-ERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHT-GGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34567889999999999999999999 9999999999954 4799999999999999999999999999999999
Q ss_pred ecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC---
Q 014513 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--- 268 (423)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~--- 268 (423)
.++.+ .++|||+|||..+|+++|+++|++||.|.+|.+..+
T Consensus 91 ~~a~~------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g 134 (261)
T 3sde_A 91 RFATH------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG 134 (261)
T ss_dssp EECCC------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTS
T ss_pred eeccc------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCC
Confidence 98753 478999999999999999999999999999999864
Q ss_pred --CcEEEEEeCChHHHHHHHHHh-CCeEeC---ceEEEEEEcccCC
Q 014513 269 --RGCGFVQFAARASAEEAILRM-QGHMIG---QQQVRISWGRKQD 308 (423)
Q Consensus 269 --~g~aFV~F~~~~~A~~Al~~l-~g~~i~---g~~l~v~~a~~~~ 308 (423)
+|||||+|.+.++|.+|+..| ++..+. +++|.|.++.+..
T Consensus 135 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 135 RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 799999999999999999999 455555 9999999998653
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=7e-23 Score=173.97 Aligned_cols=145 Identities=20% Similarity=0.255 Sum_probs=109.9
Q ss_pred EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccC
Q 014513 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVF 225 (423)
Q Consensus 146 ~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (423)
.++|+.+.. +++|||||+|.+.++|++|++.+++.......+.+........... ......
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 62 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----------------GSHHHH 62 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----------------CCCCSS
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----------------cccccc
Confidence 467777753 7999999999999999999988776443333333222111100000 000011
Q ss_pred CCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEE
Q 014513 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQV 299 (423)
Q Consensus 226 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l 299 (423)
........++|||+|||.++|+++|+++|++||.|.++.|..+ +|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 63 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 63 HHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 1223355799999999999999999999999999999999864 6899999999999999999999999999999
Q ss_pred EEEEcccCCC
Q 014513 300 RISWGRKQDV 309 (423)
Q Consensus 300 ~v~~a~~~~~ 309 (423)
+|.+|+++..
T Consensus 143 ~v~~a~~~~~ 152 (158)
T 2kn4_A 143 RVQMARYGRP 152 (158)
T ss_dssp EEEEECCSSC
T ss_pred EEEECCCCCC
Confidence 9999996543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=5.7e-23 Score=174.52 Aligned_cols=145 Identities=24% Similarity=0.297 Sum_probs=116.8
Q ss_pred EEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee------eccccCCCCCCCCCCCCceEEEeCCC
Q 014513 52 SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL------NWASFGIGEKRPDAGPEHSIFVGDLA 125 (423)
Q Consensus 52 ~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~------~~a~~~~~~~~~~~~~~~~l~vgnLp 125 (423)
+++|+.+.. .++|||||+|.+.++|++|++.+++.........+.. .+...............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 578888864 6899999999999999999988775433222211111 11111112223334557899999999
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 126 ~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
+++++++|+++| +.||.|..++|++|+.+|+++|||||+|.+.++|++|++.|||..+.|++|+|.++.++..
T Consensus 80 ~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999987654
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=7.3e-23 Score=172.20 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=114.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhh-CCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcc
Q 014513 156 GRSKGYGFVKFLDENERNRAMTEM-NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234 (423)
Q Consensus 156 g~~~G~afV~f~~~~~a~~a~~~~-~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (423)
...+|+++|+|.+.++|++|++.+ ||..+.| ++.+.++..+....... ...............+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 74 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS--------------HHHHHHMHRDSCPLDC 74 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS--------------SSCCCCSCSSSSTTSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc--------------ccccccccccCCCCCC
Confidence 477999999999999999999999 9999999 99998876533211000 0000111223445679
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 235 ~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
+|||+|||.++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|+..|||..|+|++|+|+|++++
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999999999999999987 999999999999999999999999999999999999865
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.4e-21 Score=155.05 Aligned_cols=109 Identities=28% Similarity=0.488 Sum_probs=75.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
..+|||+|||+++++++|+++| +.||.|.+|+|++++ +.++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F-~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHH-hccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5679999999999999999999 899999999999986 4589999999999999999999999999999999999987
Q ss_pred CCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHH
Q 014513 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEE 249 (423)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~ 249 (423)
++....... .......++|||+|||+++|++-
T Consensus 82 ~~~~~~~~~----------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL----------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC--------------------------------------------------
T ss_pred Ccccccccc----------------------ccccCCCCceEeCCCCCCccccc
Confidence 765432111 11223356799999999998863
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=5e-21 Score=153.19 Aligned_cols=109 Identities=22% Similarity=0.343 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
.+.+|||+|||+++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|++.|+|..|.++.+.|....
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999986 4578999999999999999999999999999765554432
Q ss_pred cccCCC-CCCCCCCCCceEEEeCCCCCCCHHH
Q 014513 102 ASFGIG-EKRPDAGPEHSIFVGDLAPDVTDYL 132 (423)
Q Consensus 102 a~~~~~-~~~~~~~~~~~l~vgnLp~~~t~~~ 132 (423)
...... .........++|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 211111 1112233456799999999999864
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.9e-20 Score=157.41 Aligned_cols=128 Identities=23% Similarity=0.368 Sum_probs=110.1
Q ss_pred CCCcceEEEEEcCHHHHHHHHHHc-CCCCCCCccceEeeeccccC-----------CCCCCCCCCCCceEEEeCCCCCCC
Q 014513 62 GQPEGYGFVEFVSHAAAERVLQTY-NGTPMPGTEQNFRLNWASFG-----------IGEKRPDAGPEHSIFVGDLAPDVT 129 (423)
Q Consensus 62 g~~~g~afVeF~~~~~A~~al~~l-~g~~~~~~~~~v~~~~a~~~-----------~~~~~~~~~~~~~l~vgnLp~~~t 129 (423)
..-+|+++|+|.+.++|++|++.+ ||..+.| .+++.++... .........+.++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 356799999999999999999999 9999998 4555555421 112233445678999999999999
Q ss_pred HHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCC
Q 014513 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198 (423)
Q Consensus 130 ~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~ 198 (423)
+++|+++| +.||.|.+|+++++ ++|||||+|.+.++|.+|+..|||..+.|++|+|.++.+++
T Consensus 87 ~~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAF-GYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHH-HHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHH-HhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999 89999999999886 68999999999999999999999999999999999998764
No 43
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.8e-20 Score=142.46 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=75.4
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCC--eEeCceEEEEEEcccC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG--HMIGQQQVRISWGRKQ 307 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g--~~i~g~~l~v~~a~~~ 307 (423)
..+.++|||+|||+++|+++|+++|++||.|++|.|.++||||||+|.+.++|++|++.|++ ..|+|++|+|.||+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 34579999999999999999999999999999999999999999999999999999998864 7899999999999976
Q ss_pred CCCC
Q 014513 308 DVTG 311 (423)
Q Consensus 308 ~~~~ 311 (423)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5544
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=141.41 Aligned_cols=81 Identities=30% Similarity=0.543 Sum_probs=77.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++|||+|||+++|+++|+++| +.||+|.+++|++|+.||+++|||||+|.+.++|++|++.|||..+.|++|+|.+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999 89999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 014513 195 TP 196 (423)
Q Consensus 195 ~~ 196 (423)
.|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=138.42 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=74.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeE--eCceEEEEEEccc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHM--IGQQQVRISWGRK 306 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~--i~g~~l~v~~a~~ 306 (423)
...++++|||+|||.++|+++|+++|++||.|.++.+.++||||||+|.+.++|.+|++.|++.. |+|++|+|.|+++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34567999999999999999999999999999999999999999999999999999999999875 8999999999987
Q ss_pred CC
Q 014513 307 QD 308 (423)
Q Consensus 307 ~~ 308 (423)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 46
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.1e-19 Score=136.84 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=75.1
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHh--CCeEeCceEEEEEEccc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM--QGHMIGQQQVRISWGRK 306 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l--~g~~i~g~~l~v~~a~~ 306 (423)
...+.++|||+|||.++|+++|+++|++||.|++|.+.++||||||+|.+.++|++|++.| ++..|+|++|+|.||+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 3456789999999999999999999999999999999999999999999999999999987 46789999999999997
Q ss_pred CCCC
Q 014513 307 QDVT 310 (423)
Q Consensus 307 ~~~~ 310 (423)
+...
T Consensus 91 ~~~~ 94 (101)
T 2cq1_A 91 KELK 94 (101)
T ss_dssp SSCC
T ss_pred ccCc
Confidence 6554
No 47
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.5e-19 Score=132.34 Aligned_cols=74 Identities=12% Similarity=0.297 Sum_probs=71.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
.+..|||+||++.+|+++|+++|.+||+|.++.+..+||||||+|.++++|++|++.||+..++|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999985
No 48
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=140.21 Aligned_cols=75 Identities=29% Similarity=0.536 Sum_probs=70.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
..++|||+|||.++|+++|+++|++||.|.++.+.++ +|||||+|.+.++|++|++.|||..|+|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4689999999999999999999999999999999763 5899999999999999999999999999999999997
Q ss_pred c
Q 014513 306 K 306 (423)
Q Consensus 306 ~ 306 (423)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 49
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=138.25 Aligned_cols=82 Identities=22% Similarity=0.262 Sum_probs=74.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCe--EeCceEEEEEEccc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH--MIGQQQVRISWGRK 306 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~--~i~g~~l~v~~a~~ 306 (423)
...+.++|||+|||.++|+++|+++|++||.|.+|.+.++||||||+|.+.++|.+|++.|++. .|+|++|+|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3456799999999999999999999999999999999999999999999999999999998764 49999999999997
Q ss_pred CCCC
Q 014513 307 QDVT 310 (423)
Q Consensus 307 ~~~~ 310 (423)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wex_A 91 KRIT 94 (104)
T ss_dssp SSCC
T ss_pred cccc
Confidence 6544
No 50
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=137.48 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCcceEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCe--EeCceEEEEEEcccC
Q 014513 231 ITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH--MIGQQQVRISWGRKQ 307 (423)
Q Consensus 231 ~~~~~l~V~nL~~-~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~--~i~g~~l~v~~a~~~ 307 (423)
.+.++|||+|||. ++|+++|+++|++||.|.+|.|.+++|||||+|.+.++|++|++.||+. .|+|++|+|.+|+..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3578999999999 9999999999999999999999999999999999999999999999864 599999999999954
No 51
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=5.7e-19 Score=149.32 Aligned_cols=81 Identities=27% Similarity=0.453 Sum_probs=74.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
..+.++|||+|||.++|+++|+++|++||.|++|.|+.+ +|||||+|.+.++|++||+.||+..|+|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999999999999999999754 58999999999999999999999999999999999
Q ss_pred cccCCCC
Q 014513 304 GRKQDVT 310 (423)
Q Consensus 304 a~~~~~~ 310 (423)
|++....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9965443
No 52
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.6e-19 Score=148.45 Aligned_cols=126 Identities=21% Similarity=0.320 Sum_probs=84.9
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCee
Q 014513 66 GYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145 (423)
Q Consensus 66 g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~ 145 (423)
-++|+++.+...+..|++.++|....++.. .......+...+.++|||+|||+++++++|+++| +.||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~--------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS--------MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF-EKYGRVG 75 (135)
T ss_dssp --------------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHH-GGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC--------CCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEE
Confidence 367899999999999999998877665431 1122334455567899999999999999999999 8999999
Q ss_pred EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcc
Q 014513 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200 (423)
Q Consensus 146 ~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~ 200 (423)
.|+|+.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.++.+....
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999999999999876543
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=136.99 Aligned_cols=84 Identities=15% Similarity=0.302 Sum_probs=77.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh-CCceecCcceEEec
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM-NGVFCSTRPMRISA 193 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g-~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~-~g~~~~g~~i~v~~ 193 (423)
+++|||+|||+++|+++|+++| +.|| .|.+|+|++|+.||+++|||||+|.+.++|++|++.+ ++..+.|++|+|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 4689999999999999999999 8999 8999999999999999999999999999999999977 46679999999999
Q ss_pred ccCCCcc
Q 014513 194 ATPKKTT 200 (423)
Q Consensus 194 a~~~~~~ 200 (423)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887653
No 54
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=135.12 Aligned_cols=81 Identities=28% Similarity=0.521 Sum_probs=75.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
...+.++|||+|||..+|+++|+++|++||.|..+.+.+++|||||+|.+.++|++|++.|||..|+|+.|+|.+++++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 014513 309 V 309 (423)
Q Consensus 309 ~ 309 (423)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 55
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=138.18 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=80.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
.+.++|||+|||+++++++|+++| ++||.|.+|+|++|+.|++++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 014513 194 ATPKKT 199 (423)
Q Consensus 194 a~~~~~ 199 (423)
+.....
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 866543
No 56
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=4.2e-18 Score=133.38 Aligned_cols=79 Identities=29% Similarity=0.489 Sum_probs=73.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCC
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 310 (423)
.+.++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||+.|+|+.|+|.+++++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 457999999999999999999999999999999998 679999999999999999999999999999999999976544
Q ss_pred C
Q 014513 311 G 311 (423)
Q Consensus 311 ~ 311 (423)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 57
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=139.60 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=75.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCC--eEeCceEEEEEEcccC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG--HMIGQQQVRISWGRKQ 307 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g--~~i~g~~l~v~~a~~~ 307 (423)
..++++|||+|||+++|+++|+++|++||.|++|.|+++||||||+|.+.++|++|++.|++ ..|+|++|+|.||+++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 34578999999999999999999999999999999999999999999999999999999984 5799999999999976
Q ss_pred CCCC
Q 014513 308 DVTG 311 (423)
Q Consensus 308 ~~~~ 311 (423)
....
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5543
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-18 Score=133.06 Aligned_cols=84 Identities=25% Similarity=0.494 Sum_probs=76.9
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
......++|||+|||.++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|+..|||..|+|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34456799999999999999999999999999999999876 79999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 014513 304 GRKQDVTG 311 (423)
Q Consensus 304 a~~~~~~~ 311 (423)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99765443
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-18 Score=132.58 Aligned_cols=81 Identities=28% Similarity=0.445 Sum_probs=75.0
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.....++|||+|||..+|+++|+++|++||.|.+|.|.. ++|||||+|.+.++|++|+..|||..|+|+.|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 445679999999999999999999999999999999987 4799999999999999999999999999999999999
Q ss_pred ccCCC
Q 014513 305 RKQDV 309 (423)
Q Consensus 305 ~~~~~ 309 (423)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 97544
No 60
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=132.28 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=73.9
Q ss_pred CCcceEEEecCCCCCCHHHHH----HHhhhcCCeEEEEEeCC---CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELK----QTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~----~~F~~~G~I~~v~i~~~---~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
.+.++|||+|||.++|+++|+ ++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999 99999999999999876 89999999999999999999999999999999999
Q ss_pred cccCCC
Q 014513 304 GRKQDV 309 (423)
Q Consensus 304 a~~~~~ 309 (423)
|++...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 986543
No 61
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=136.17 Aligned_cols=81 Identities=28% Similarity=0.591 Sum_probs=76.1
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
....++|||+|||..+|+++|+++|++||.|.+|.+..++|||||+|.+.++|++|+..|||..|+|+.|+|.|++++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred C
Q 014513 310 T 310 (423)
Q Consensus 310 ~ 310 (423)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 62
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=133.41 Aligned_cols=80 Identities=24% Similarity=0.503 Sum_probs=75.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeC--ceEEEEEEcccC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIG--QQQVRISWGRKQ 307 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~--g~~l~v~~a~~~ 307 (423)
..+.++|||+|||.++|+++|+++|++||.|+++.+..++|||||+|.+.++|++|++.|||..|+ |+.|+|.|++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999 999999999976
Q ss_pred CC
Q 014513 308 DV 309 (423)
Q Consensus 308 ~~ 309 (423)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=6.6e-18 Score=135.08 Aligned_cols=82 Identities=33% Similarity=0.694 Sum_probs=75.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
...+.++|||+|||..+|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999875 5899999999999999999999999999999999
Q ss_pred EcccCCCC
Q 014513 303 WGRKQDVT 310 (423)
Q Consensus 303 ~a~~~~~~ 310 (423)
|++++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99976544
No 64
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-18 Score=132.66 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=73.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCc-----eEEEEEEcc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQ-----QQVRISWGR 305 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g-----~~l~v~~a~ 305 (423)
...++|||+|||.++|+++|+++|++||.|+.|.|..+ |||||+|.+.++|++||+.|||+.|+| +.|+|.+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45799999999999999999999999999999999988 999999999999999999999999999 999999999
Q ss_pred cCCC
Q 014513 306 KQDV 309 (423)
Q Consensus 306 ~~~~ 309 (423)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 65
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=130.35 Aligned_cols=77 Identities=35% Similarity=0.698 Sum_probs=73.1
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHh-CCeEeCceEEEEEEcc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM-QGHMIGQQQVRISWGR 305 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l-~g~~i~g~~l~v~~a~ 305 (423)
.....++|||+|||.++|+++|+++|++||.|.++.+.+++|||||+|.+.++|++|++.| +|..++|++|+|+||+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456799999999999999999999999999999999999999999999999999999999 9999999999999985
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=132.01 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=74.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.+.++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999874 599999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014513 305 RKQDVT 310 (423)
Q Consensus 305 ~~~~~~ 310 (423)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 976543
No 67
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-18 Score=130.44 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=74.0
Q ss_pred CCCCCCcceEEEecCCCCCCHHHHHHHhhhc--CCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 227 ADNDITNTTIFVGNLDPNVTEEELKQTFLHF--GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 227 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~--G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.....+.++|||+|||..+|+++|+++|++| |.|.++.+. +|||||+|.+.++|++|+..|||..|+|+.|+|.++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3444567999999999999999999999999 999999886 789999999999999999999999999999999999
Q ss_pred ccCCC
Q 014513 305 RKQDV 309 (423)
Q Consensus 305 ~~~~~ 309 (423)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 68
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=130.33 Aligned_cols=78 Identities=22% Similarity=0.467 Sum_probs=73.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCC
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 310 (423)
.+.++|||+|||.++|+++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..|+|+.|+|.+++++...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 457999999999999999999999999999999998 899999999999999999999999999999999999976543
No 69
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=136.24 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=73.2
Q ss_pred CCCcceEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCC--eEeCceEEEEEEccc
Q 014513 230 DITNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG--HMIGQQQVRISWGRK 306 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g--~~i~g~~l~v~~a~~ 306 (423)
..++++|||+|||.+ +|+++|+++|++||.|.+|.|.++||||||+|.+.++|++|++.|++ ..|+|++|+|.+|++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 446799999999998 99999999999999999999999999999999999999999998864 559999999999986
Q ss_pred CCC
Q 014513 307 QDV 309 (423)
Q Consensus 307 ~~~ 309 (423)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=132.44 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=74.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC---CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~---~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
...+.++|||+|||.++|+++|+++|++||.|+.|.|..+ +|||||+|.+.++|++|++.||+..|+|+.|+|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3456799999999999999999999999999999999874 6899999999999999999999999999999999998
Q ss_pred cCCC
Q 014513 306 KQDV 309 (423)
Q Consensus 306 ~~~~ 309 (423)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 71
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=133.49 Aligned_cols=82 Identities=26% Similarity=0.562 Sum_probs=75.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
...+.++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3456799999999999999999999999999999999854 899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014513 305 RKQDVT 310 (423)
Q Consensus 305 ~~~~~~ 310 (423)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976544
No 72
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=8.1e-19 Score=134.60 Aligned_cols=82 Identities=16% Similarity=0.346 Sum_probs=75.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCC--eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCc----eecCc
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPS--VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV----FCSTR 187 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~--v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~----~~~g~ 187 (423)
..-++|||+|||+++|+++|+++| +.||. |.+|++++|+.||++||||||+|.+.++|++|++.||+. .+.||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345789999999999999999999 99995 779999999999999999999999999999999999996 48999
Q ss_pred ceEEecccC
Q 014513 188 PMRISAATP 196 (423)
Q Consensus 188 ~i~v~~a~~ 196 (423)
+|.|++|..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 73
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9.2e-18 Score=128.52 Aligned_cols=80 Identities=23% Similarity=0.423 Sum_probs=73.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
.....++|||+|||.++|+++|+++|++||.|.++.+. ++||||+|.+.++|++|++.|||+.|+|+.|+|++++++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 34567999999999999999999999999999999998 5699999999999999999999999999999999998664
Q ss_pred CC
Q 014513 309 VT 310 (423)
Q Consensus 309 ~~ 310 (423)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 74
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=133.44 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=69.5
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEeC------CCcEEEEEeCChHHHHHHHHHhC-CeEeCceEEEEEEc
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFG-EIVNVKIPM------GRGCGFVQFAARASAEEAILRMQ-GHMIGQQQVRISWG 304 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G-~I~~v~i~~------~~g~aFV~F~~~~~A~~Al~~l~-g~~i~g~~l~v~~a 304 (423)
+++|||+|||.++|+++|+++|++|| .|.+|+|++ +||||||+|.+.++|++|++.++ +..|+|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999975 37999999999999999999885 56799999999999
Q ss_pred ccCCC
Q 014513 305 RKQDV 309 (423)
Q Consensus 305 ~~~~~ 309 (423)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=133.47 Aligned_cols=82 Identities=24% Similarity=0.518 Sum_probs=75.7
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-------CcEEEEEeCChHHHHHHHHHh-CCeEeCceEEE
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-------RGCGFVQFAARASAEEAILRM-QGHMIGQQQVR 300 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-------~g~aFV~F~~~~~A~~Al~~l-~g~~i~g~~l~ 300 (423)
.....++|||+|||..+|+++|+++|++||.|..|.|..+ +|||||+|.+.++|++|+..| ||..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456799999999999999999999999999999999876 799999999999999999999 99999999999
Q ss_pred EEEcccCCCC
Q 014513 301 ISWGRKQDVT 310 (423)
Q Consensus 301 v~~a~~~~~~ 310 (423)
|.|++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999976443
No 76
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=4e-18 Score=127.86 Aligned_cols=75 Identities=33% Similarity=0.646 Sum_probs=71.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|++|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999865 799999999999999999999999999999999999865
Q ss_pred C
Q 014513 308 D 308 (423)
Q Consensus 308 ~ 308 (423)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=130.65 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=74.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.+.++|||+|||..+|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34699999999999999999999999999999999874 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014513 305 RKQDVT 310 (423)
Q Consensus 305 ~~~~~~ 310 (423)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-17 Score=132.62 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=74.4
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
....++|||+|||.++|+++|+++|++||.|++|.|..+ +|||||+|.+.++|++|++.|||+.|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345799999999999999999999999999999999875 799999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014513 305 RKQDVT 310 (423)
Q Consensus 305 ~~~~~~ 310 (423)
+.....
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 854433
No 79
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=132.59 Aligned_cols=82 Identities=27% Similarity=0.546 Sum_probs=75.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
..+.++|||+|||..+|+++|+++|++||.|++|.|+.+ +|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346799999999999999999999999999999999764 79999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 014513 304 GRKQDVTG 311 (423)
Q Consensus 304 a~~~~~~~ 311 (423)
++++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99765443
No 80
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=6.4e-19 Score=144.89 Aligned_cols=119 Identities=24% Similarity=0.339 Sum_probs=75.3
Q ss_pred eEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEec
Q 014513 161 YGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGN 240 (423)
Q Consensus 161 ~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 240 (423)
+.|+++.+...+..|+..++|....++.- ..... ++......++|||+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~------------------------------~~~~~~~~~~l~V~n 54 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR------------------------------PPPDVEGMTSLKVDN 54 (135)
T ss_dssp ------------------------------CCSCC------------------------------SCSSGGGCCCEEEEC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC------------------------------CCCCCCCCCEEEEeC
Confidence 57788888888899998888776544321 11111 112234468999999
Q ss_pred CCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCC
Q 014513 241 LDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (423)
Q Consensus 241 L~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 310 (423)
||.++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+|++++..+
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999764 689999999999999999999999999999999999965443
No 81
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=130.14 Aligned_cols=82 Identities=17% Similarity=0.438 Sum_probs=75.0
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
....+.++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999874 4999999999999999999999999999999999
Q ss_pred EcccCCC
Q 014513 303 WGRKQDV 309 (423)
Q Consensus 303 ~a~~~~~ 309 (423)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9986643
No 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=131.70 Aligned_cols=80 Identities=34% Similarity=0.603 Sum_probs=74.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEE-EEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV-KIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v-~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
.+.++|||+|||.++|+++|+++|++||.|.++ .|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 347999999999999999999999999999999 88774 79999999999999999999999999999999999
Q ss_pred cccCCCC
Q 014513 304 GRKQDVT 310 (423)
Q Consensus 304 a~~~~~~ 310 (423)
++++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9976543
No 83
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-18 Score=134.32 Aligned_cols=77 Identities=26% Similarity=0.525 Sum_probs=73.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
...++|||+|||.++|+++|+++|++||.|.++.+.+++|||||+|.+.++|++|+..|||..|+|+.|+|+||+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998853
No 84
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=9.8e-18 Score=134.05 Aligned_cols=93 Identities=33% Similarity=0.626 Sum_probs=85.6
Q ss_pred CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC
Q 014513 107 GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 107 ~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
.....+..+.++|||+|||+++++++|+++| +.||.|..|+|++++.+++++|||||+|.+.++|++|++.|++..+.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3445566678999999999999999999999 899999999999999899999999999999999999999999999999
Q ss_pred cceEEecccCCCcc
Q 014513 187 RPMRISAATPKKTT 200 (423)
Q Consensus 187 ~~i~v~~a~~~~~~ 200 (423)
+.|+|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999877654
No 85
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=135.19 Aligned_cols=80 Identities=25% Similarity=0.430 Sum_probs=74.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
...++|||+|||.++|+++|+++|++||.|++|.|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999885 4999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014513 306 KQDVT 310 (423)
Q Consensus 306 ~~~~~ 310 (423)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 66543
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=8e-18 Score=132.26 Aligned_cols=82 Identities=26% Similarity=0.516 Sum_probs=75.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCc---eEEEE
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQ---QQVRI 301 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g---~~l~v 301 (423)
....++|||+|||.++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 355799999999999999999999999999999999876 7999999999999999999999999887 99999
Q ss_pred EEcccCCCCC
Q 014513 302 SWGRKQDVTG 311 (423)
Q Consensus 302 ~~a~~~~~~~ 311 (423)
.+|+++....
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999765543
No 87
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=2e-18 Score=169.21 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=73.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.+.++|||+|||..+|+++|+++|++||.|+.|.|+.+ +|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999764 799999999999999999999999999999999999
Q ss_pred ccCCC
Q 014513 305 RKQDV 309 (423)
Q Consensus 305 ~~~~~ 309 (423)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 96544
No 88
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=131.42 Aligned_cols=80 Identities=26% Similarity=0.483 Sum_probs=73.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC---------CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM---------GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~---------~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v 301 (423)
.+.++|||+|||.++|+++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3468999999999999999999999999999999974 3589999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 014513 302 SWGRKQDVT 310 (423)
Q Consensus 302 ~~a~~~~~~ 310 (423)
++++++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999866543
No 89
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=128.75 Aligned_cols=76 Identities=33% Similarity=0.716 Sum_probs=70.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
+.++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+||+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4689999999999999999999999999999999865 5899999999999999999999999999999999998
Q ss_pred cC
Q 014513 306 KQ 307 (423)
Q Consensus 306 ~~ 307 (423)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 90
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.1e-17 Score=133.76 Aligned_cols=83 Identities=25% Similarity=0.516 Sum_probs=75.5
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v 301 (423)
....+.++|||+|||.++|+++|+++|++||.|++|.|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999864 489999999999999999999999999999999
Q ss_pred EEcccCCCC
Q 014513 302 SWGRKQDVT 310 (423)
Q Consensus 302 ~~a~~~~~~ 310 (423)
.|++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999976543
No 91
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=6.6e-18 Score=126.66 Aligned_cols=82 Identities=38% Similarity=0.642 Sum_probs=78.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
+.+|||+|||+++++++|+++| +.||.|.+++++.++.+++++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 3579999999999999999999 999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 014513 196 PKK 198 (423)
Q Consensus 196 ~~~ 198 (423)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 92
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-17 Score=127.17 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=73.4
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
....++|||+|| ++|+++|+++|++||.|.+|.|..++|||||+|.+.++|++|+..|||..|+|+.|+|.|++++..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 345789999996 899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 014513 310 T 310 (423)
Q Consensus 310 ~ 310 (423)
.
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=134.70 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 21 ~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
.+.++|||+|||+++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|++.|||..+.++.+.|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999997666654
No 94
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7e-18 Score=132.11 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=77.1
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
.......+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|||..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34456778899999999999999999999999999999999999889999999999999999999999999999999965
Q ss_pred ceEee
Q 014513 95 QNFRL 99 (423)
Q Consensus 95 ~~v~~ 99 (423)
+.|..
T Consensus 87 l~v~~ 91 (103)
T 2cq0_A 87 LNVEW 91 (103)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 55443
No 95
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=130.73 Aligned_cols=87 Identities=25% Similarity=0.413 Sum_probs=78.4
Q ss_pred CCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 13 QHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 13 ~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
....+......++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..|.+
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 5 SSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp SSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34445667788999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred ccceEee
Q 014513 93 TEQNFRL 99 (423)
Q Consensus 93 ~~~~v~~ 99 (423)
+.+.|..
T Consensus 85 ~~l~v~~ 91 (105)
T 1x5u_A 85 KPIRVNK 91 (105)
T ss_dssp CBCEEEE
T ss_pred eEEEEEE
Confidence 6655544
No 96
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=130.34 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=75.3
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
......+.++|||+|||+++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|.+|++.|||..|.++.+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 33455678899999999999999999999999999999999999889999999999999999999999999999998655
Q ss_pred eEe
Q 014513 96 NFR 98 (423)
Q Consensus 96 ~v~ 98 (423)
.|.
T Consensus 89 ~v~ 91 (94)
T 2e5h_A 89 KAS 91 (94)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 97
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=6.8e-18 Score=133.85 Aligned_cols=76 Identities=24% Similarity=0.542 Sum_probs=71.3
Q ss_pred CCcceEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 231 ITNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 231 ~~~~~l~V~nL~~~-~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
...++|||+|||.. +|+++|+++|++||.|.+|.+ .+|||||+|.+.++|++|++.|||..|+|+.|+|.++++..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 34689999999999 999999999999999999999 58999999999999999999999999999999999998543
No 98
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=131.52 Aligned_cols=90 Identities=29% Similarity=0.510 Sum_probs=83.8
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..|+|+.++.+++++|||||+|.+.++|++|++.|++..+.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELF-LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3455678899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
+|.++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876653
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=5.2e-18 Score=144.74 Aligned_cols=137 Identities=16% Similarity=0.306 Sum_probs=74.5
Q ss_pred EEeCCHHHHHHHHHhhCCceec--CcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecC
Q 014513 164 VKFLDENERNRAMTEMNGVFCS--TRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNL 241 (423)
Q Consensus 164 V~f~~~~~a~~a~~~~~g~~~~--g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL 241 (423)
.+|.+.++|+.++..+++.... |+......+...... .+..... .........+....+.++|||+||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~----~~~~~~~------s~~~~~~~~~~~~~~~~~l~V~nL 80 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH----SYERVRN------EDDDELEPGPQRSVEGWILFVTSI 80 (165)
T ss_dssp -----------------------------------------------------------------CCCCC-CEEEEEESC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc----Ccccccc------CCCCCCCCCCCCCCCCCEEEEeCC
Confidence 6899999999999988886653 444444332111100 0000000 000001112233456789999999
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCC
Q 014513 242 DPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (423)
Q Consensus 242 ~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 310 (423)
|..+|+++|+++|++||.|..|.|..+ +|||||+|.+.++|++||..|||..|+|+.|+|.|+.++...
T Consensus 81 p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 81 HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999999999999999999999999875 699999999999999999999999999999999999976544
No 100
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=128.86 Aligned_cols=88 Identities=27% Similarity=0.438 Sum_probs=81.8
Q ss_pred CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 108 ~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
..+....+.++|||+|||+++++++|+++| +.||.|..++++.++.+++++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHH-HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 334456678899999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ceEEecccC
Q 014513 188 PMRISAATP 196 (423)
Q Consensus 188 ~i~v~~a~~ 196 (423)
+|+|.++.+
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999998864
No 101
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=128.81 Aligned_cols=86 Identities=31% Similarity=0.607 Sum_probs=81.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
.+.++|||+|||+++++++|+++| +.||.|..+++++++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIF-EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 457899999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 014513 194 ATPKKTT 200 (423)
Q Consensus 194 a~~~~~~ 200 (423)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887654
No 102
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=128.27 Aligned_cols=83 Identities=37% Similarity=0.703 Sum_probs=77.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
.+.++|||+|||.++++++|+++| +.||.|.+++++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 357889999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014513 194 ATPK 197 (423)
Q Consensus 194 a~~~ 197 (423)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 103
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=129.53 Aligned_cols=87 Identities=23% Similarity=0.457 Sum_probs=81.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|.+|+|+.++.+++++|||||+|.+.++|++|++ +++..+.|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYF-KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHH-SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 44567899999999999999999999 899999999999999999999999999999999999999 9999999999999
Q ss_pred ecccCCCcc
Q 014513 192 SAATPKKTT 200 (423)
Q Consensus 192 ~~a~~~~~~ 200 (423)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999877654
No 104
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.9e-18 Score=131.76 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=72.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g--~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
.+|||+|||+++++++|+++| +.|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 479999999999999999999 8999 9999999999999999999999999999999999999999999999999998
Q ss_pred cCCCc
Q 014513 195 TPKKT 199 (423)
Q Consensus 195 ~~~~~ 199 (423)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87644
No 105
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=127.00 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
....++|||+|||.++|+++|+++|++||.|.++.+. ++||||+|.+.++|++|++.|||..|+|+.|+|.+++++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 3557999999999999999999999999999999998 56999999999999999999999999999999999986643
No 106
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=5e-18 Score=144.85 Aligned_cols=130 Identities=16% Similarity=0.233 Sum_probs=80.8
Q ss_pred EEEcCHHHHHHHHHHcCCCCCCCccceEeeeccccC---------------CCCCCCCCCCCceEEEeCCCCCCCHHHHH
Q 014513 70 VEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFG---------------IGEKRPDAGPEHSIFVGDLAPDVTDYLLQ 134 (423)
Q Consensus 70 VeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~~---------------~~~~~~~~~~~~~l~vgnLp~~~t~~~l~ 134 (423)
.+|.+.++|..++..|++.....+...+...+.... .........+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 689999999999999988776633333333332110 11122234456789999999999999999
Q ss_pred HHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCcc
Q 014513 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200 (423)
Q Consensus 135 ~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~~ 200 (423)
++| +.||.|..|.|+.++.+|+++|||||+|.+.++|.+|+..|||..|.|++|.|.++.++...
T Consensus 91 ~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHh-hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999 99999999999999999999999999999999999999999999999999999999776543
No 107
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-18 Score=132.27 Aligned_cols=88 Identities=28% Similarity=0.598 Sum_probs=82.4
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..+++++++.+|+++|||||+|.+.++|++|++.++|..+.|++|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIF-EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHH-TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4455677899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 014513 190 RISAATPKK 198 (423)
Q Consensus 190 ~v~~a~~~~ 198 (423)
+|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999997753
No 108
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-18 Score=131.61 Aligned_cols=91 Identities=25% Similarity=0.403 Sum_probs=84.4
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcc
Q 014513 109 KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (423)
Q Consensus 109 ~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~ 188 (423)
......+.++|||+|||+++++++|+++| +.||.|..|+|++++.+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELF-RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTS-TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34456678999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eEEecccCCCcc
Q 014513 189 MRISAATPKKTT 200 (423)
Q Consensus 189 i~v~~a~~~~~~ 200 (423)
|+|.++.++...
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876553
No 109
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.3e-18 Score=133.74 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=70.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcC-CeEEEEEe--CCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFG-EIVNVKIP--MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G-~I~~v~i~--~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
..++|||+|||+++|+++|+++|++|| .|..+.+. .++|||||+|.+.++|++||+.|||..|+|+.|+|.+++..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 468999999999999999999999999 99999996 36899999999999999999999999999999999998754
No 110
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=7.2e-18 Score=127.08 Aligned_cols=75 Identities=29% Similarity=0.596 Sum_probs=70.6
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
.+.++|||+|||.++|+++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|||..|+|+.|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999653 799999999999999999999999999999999998
Q ss_pred c
Q 014513 305 R 305 (423)
Q Consensus 305 ~ 305 (423)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=132.60 Aligned_cols=78 Identities=14% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCcceEEE--ecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEe-----CceEEEEEE
Q 014513 231 ITNTTIFV--GNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI-----GQQQVRISW 303 (423)
Q Consensus 231 ~~~~~l~V--~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i-----~g~~l~v~~ 303 (423)
.+.++||| +||+.++|+++|+++|++||.|.+|.++.+||||||+|.+.++|++|++.|||+.| .|++|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 34688999 77999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred cccCC
Q 014513 304 GRKQD 308 (423)
Q Consensus 304 a~~~~ 308 (423)
++..+
T Consensus 103 a~~~p 107 (114)
T 2cq2_A 103 VEKVQ 107 (114)
T ss_dssp ESCCC
T ss_pred cccCc
Confidence 98543
No 112
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=128.96 Aligned_cols=88 Identities=19% Similarity=0.392 Sum_probs=81.6
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..++|+.++ +++++|||||+|.+.++|++|++.||+..+.|++|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEIC-KAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3345567899999999999999999999 899999999999998 89999999999999999999999999999999999
Q ss_pred EEecccCCCc
Q 014513 190 RISAATPKKT 199 (423)
Q Consensus 190 ~v~~a~~~~~ 199 (423)
+|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 113
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=129.64 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=82.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..+.++|||+|||+++++++|+++| +.||.|..++|+.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLF-SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4467899999999999999999999 899999999999999899999999999999999999999999999999999999
Q ss_pred cccCCCcc
Q 014513 193 AATPKKTT 200 (423)
Q Consensus 193 ~a~~~~~~ 200 (423)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887654
No 114
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=129.38 Aligned_cols=86 Identities=19% Similarity=0.312 Sum_probs=77.5
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
.....+.+.++|||+|||+++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|.+|++.|||..+.++.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34456778899999999999999999999999999999999999989999999999999999999999999999999854
Q ss_pred ceEeeecc
Q 014513 95 QNFRLNWA 102 (423)
Q Consensus 95 ~~v~~~~a 102 (423)
+++.++
T Consensus 87 --l~v~~a 92 (95)
T 2cqc_A 87 --IRVSGP 92 (95)
T ss_dssp --EEEECC
T ss_pred --EEEEec
Confidence 455554
No 115
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=9.3e-18 Score=129.59 Aligned_cols=85 Identities=27% Similarity=0.480 Sum_probs=81.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
++++|||+|||.++++++|+++| +.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 46789999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 014513 195 TPKKTT 200 (423)
Q Consensus 195 ~~~~~~ 200 (423)
.++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 887654
No 116
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=137.41 Aligned_cols=82 Identities=28% Similarity=0.454 Sum_probs=74.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
.....++|||+|||.++|+++|+++|++||.|++|.|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456799999999999999999999999999999999753 7899999999999999999999999999999999
Q ss_pred EcccCCCC
Q 014513 303 WGRKQDVT 310 (423)
Q Consensus 303 ~a~~~~~~ 310 (423)
+++++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99966443
No 117
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=129.82 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=78.7
Q ss_pred CCCCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 014513 11 YHQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (423)
Q Consensus 11 ~~~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~ 90 (423)
+++..+.....+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++.++|||||+|.+.++|.+|++.|||..|
T Consensus 3 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 3 SGSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp CCCCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 344555667778999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred CCccceEeeec
Q 014513 91 PGTEQNFRLNW 101 (423)
Q Consensus 91 ~~~~~~v~~~~ 101 (423)
.++.+.|....
T Consensus 81 ~g~~l~V~~a~ 91 (103)
T 2d9p_A 81 ATKPLYVALAQ 91 (103)
T ss_dssp SSSBCEEEECS
T ss_pred CCcEEEEEEec
Confidence 99666555433
No 118
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=131.13 Aligned_cols=88 Identities=25% Similarity=0.441 Sum_probs=82.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..|+|+.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHh-hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 44567899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCcc
Q 014513 192 SAATPKKTT 200 (423)
Q Consensus 192 ~~a~~~~~~ 200 (423)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999887654
No 119
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=133.38 Aligned_cols=81 Identities=25% Similarity=0.510 Sum_probs=75.2
Q ss_pred CCCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 227 ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 227 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
.......++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344566799999999999999999999999999999999875 7999999999999999999999999999999999
Q ss_pred EcccC
Q 014513 303 WGRKQ 307 (423)
Q Consensus 303 ~a~~~ 307 (423)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99865
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=130.69 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=70.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCC-eEEEEEeCCCcEEEEEeCChHHHHHHHHHhCC-eEeCceEEEEEEcccCC
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGE-IVNVKIPMGRGCGFVQFAARASAEEAILRMQG-HMIGQQQVRISWGRKQD 308 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~-I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g-~~i~g~~l~v~~a~~~~ 308 (423)
...++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..|+|+.|+|.+++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 45689999999999999999999999999 555555 5689999999999999999999999 99999999999999764
Q ss_pred C
Q 014513 309 V 309 (423)
Q Consensus 309 ~ 309 (423)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 121
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=132.54 Aligned_cols=77 Identities=27% Similarity=0.476 Sum_probs=72.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCC
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 310 (423)
++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|++++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999986 999999999999999999999999999999999999976543
No 122
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=8.3e-18 Score=137.03 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=77.6
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
.....+.+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.|||..|.++.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 44566788899999999999999999999999999999999999989999999999999999999999999999999966
Q ss_pred ceEee
Q 014513 95 QNFRL 99 (423)
Q Consensus 95 ~~v~~ 99 (423)
+.|..
T Consensus 118 l~V~~ 122 (129)
T 2kxn_B 118 IRVDF 122 (129)
T ss_dssp CEESC
T ss_pred EEEEE
Confidence 55543
No 123
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=131.33 Aligned_cols=90 Identities=21% Similarity=0.447 Sum_probs=83.7
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC------Cce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN------GVF 183 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~------g~~ 183 (423)
.....+.++|||+|||+++++++|+++| +.||.|..|+|++++.+++++|||||+|.+.++|.+|++.+| +..
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVL-QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3455668899999999999999999999 899999999999999999999999999999999999999999 999
Q ss_pred ecCcceEEecccCCCcc
Q 014513 184 CSTRPMRISAATPKKTT 200 (423)
Q Consensus 184 ~~g~~i~v~~a~~~~~~ 200 (423)
+.|+.|+|.++.++...
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999887554
No 124
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1.4e-17 Score=128.68 Aligned_cols=77 Identities=26% Similarity=0.442 Sum_probs=71.9
Q ss_pred CCCCcceEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 229 NDITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
...+.++|||+|||. ++|+++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..++|+.|+|++++++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 445679999999998 99999999999999999999995 899999999999999999999999999999999999864
No 125
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-17 Score=130.71 Aligned_cols=81 Identities=32% Similarity=0.455 Sum_probs=73.9
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v 301 (423)
....+.++|||+|||.++|+++|+++|++||.|++|.|..+ +|||||+|.+.++|++|++.+++ .|+|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 44566799999999999999999999999999999999874 68999999999999999999998 899999999
Q ss_pred EEcccCCC
Q 014513 302 SWGRKQDV 309 (423)
Q Consensus 302 ~~a~~~~~ 309 (423)
.++.+...
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99986543
No 126
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1e-17 Score=129.29 Aligned_cols=76 Identities=20% Similarity=0.493 Sum_probs=72.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
+++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|++|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999999764 79999999999999999999999999999999999986
Q ss_pred CC
Q 014513 307 QD 308 (423)
Q Consensus 307 ~~ 308 (423)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 127
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=131.32 Aligned_cols=90 Identities=23% Similarity=0.406 Sum_probs=83.6
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.+...+.++|||+|||+++++++|+++| +.||.|..+.|+.++.|++++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVF-EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3455668899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
+|.++.+....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999876543
No 128
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.4e-17 Score=133.19 Aligned_cols=89 Identities=24% Similarity=0.374 Sum_probs=82.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
....+.++|||+|||+++++++|+++| +.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMF-MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHH-GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCcc
Q 014513 191 ISAATPKKTT 200 (423)
Q Consensus 191 v~~a~~~~~~ 200 (423)
|.++.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876553
No 129
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=131.67 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCCcceEEEecCCCCCCHHHHH---HHhhhcCCeEEEEEeCCC---------cEEEEEeCChHHHHHHHHHhCCeEeCce
Q 014513 230 DITNTTIFVGNLDPNVTEEELK---QTFLHFGEIVNVKIPMGR---------GCGFVQFAARASAEEAILRMQGHMIGQQ 297 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~---~~F~~~G~I~~v~i~~~~---------g~aFV~F~~~~~A~~Al~~l~g~~i~g~ 297 (423)
....++|||+|||.++++++|+ ++|++||.|.+|.|.+++ |||||+|.+.++|++|++.|||+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999998643 7999999999999999999999999999
Q ss_pred EEEEEEcccCC
Q 014513 298 QVRISWGRKQD 308 (423)
Q Consensus 298 ~l~v~~a~~~~ 308 (423)
.|+|++|+++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999764
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=5e-18 Score=135.78 Aligned_cols=105 Identities=18% Similarity=0.312 Sum_probs=93.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..+.++|||+|||+++++++|+++| +.||.|.++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIF-GKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4467899999999999999999999 89999999999976 5669999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCCCHHHHHHHhhhcCC
Q 014513 193 AATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259 (423)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~ 259 (423)
++.++... .+++...++++|.++|++||.
T Consensus 81 ~a~~~~~~--------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98764331 366777889999999999984
No 131
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=129.07 Aligned_cols=86 Identities=35% Similarity=0.686 Sum_probs=81.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEE-EEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGA-KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v-~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
.+.++|||+|||+++++++|+++| +.||.|..+ +|++++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 457899999999999999999999 899999999 999999999999999999999999999999999999999999999
Q ss_pred cccCCCcc
Q 014513 193 AATPKKTT 200 (423)
Q Consensus 193 ~a~~~~~~ 200 (423)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876654
No 132
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=132.30 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=74.9
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeE--------EEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIV--------NVKIPMG------RGCGFVQFAARASAEEAILRMQGHM 293 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~--------~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~ 293 (423)
......++|||+|||.++|+++|+++|++||.|. .|.|..+ +|||||+|.+.++|++|++.|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445679999999999999999999999999999 5888764 6899999999999999999999999
Q ss_pred eCceEEEEEEcccCCCC
Q 014513 294 IGQQQVRISWGRKQDVT 310 (423)
Q Consensus 294 i~g~~l~v~~a~~~~~~ 310 (423)
|+|+.|+|.+++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999976443
No 133
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=127.04 Aligned_cols=85 Identities=26% Similarity=0.372 Sum_probs=79.5
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..++++.++.+++++|||||+|.+.++|++|++.||+..+.|++|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3445567899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEeccc
Q 014513 190 RISAAT 195 (423)
Q Consensus 190 ~v~~a~ 195 (423)
+|.++.
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998873
No 134
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=131.55 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=74.3
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC----CC
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE--VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP----MP 91 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~--v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~----~~ 91 (423)
...+...||||+|||+++++++|+++|++||. +.+|++++++.+|.++|||||+|.+.++|.+|++.|||.. +.
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 45677889999999999999999999999995 6799999999999999999999999999999999999975 66
Q ss_pred CccceEeeeccc
Q 014513 92 GTEQNFRLNWAS 103 (423)
Q Consensus 92 ~~~~~v~~~~a~ 103 (423)
|+ .+.+.|+.
T Consensus 84 Gr--~i~V~~Ak 93 (95)
T 2lkz_A 84 GK--TIGVDFAK 93 (95)
T ss_dssp TE--EEEEEECC
T ss_pred CE--EEEEEEcc
Confidence 74 55556653
No 135
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=9.6e-18 Score=132.28 Aligned_cols=79 Identities=30% Similarity=0.537 Sum_probs=73.3
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
......++|||+|||.++|+++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..|+|+.|+|.+++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 345667999999999999999999999999999999999 899999999999999999999999999999999999865
Q ss_pred C
Q 014513 308 D 308 (423)
Q Consensus 308 ~ 308 (423)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-17 Score=129.34 Aligned_cols=87 Identities=15% Similarity=0.374 Sum_probs=77.7
Q ss_pred CCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec-CCCCCCcceEEEEEcCHHHHHHHHHHc-CCCCCC
Q 014513 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRN-KITGQPEGYGFVEFVSHAAAERVLQTY-NGTPMP 91 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~-~~~g~~~g~afVeF~~~~~A~~al~~l-~g~~~~ 91 (423)
...+....+.++|||+|||+++++++|+++|++||.|.+|+|+++ +.++.++|||||+|.+.++|.+|++.| |+..|.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 344556678899999999999999999999999999999999998 789999999999999999999999999 999999
Q ss_pred CccceEeee
Q 014513 92 GTEQNFRLN 100 (423)
Q Consensus 92 ~~~~~v~~~ 100 (423)
++.+.|...
T Consensus 86 g~~l~v~~a 94 (107)
T 2cph_A 86 GRRLVLEWA 94 (107)
T ss_dssp SCBCEEEEC
T ss_pred CCEEEEEeC
Confidence 966555443
No 137
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=131.44 Aligned_cols=86 Identities=21% Similarity=0.348 Sum_probs=81.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..|.|+.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|.|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 44567889999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 014513 192 SAATPKK 198 (423)
Q Consensus 192 ~~a~~~~ 198 (423)
.++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987654
No 138
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=128.70 Aligned_cols=83 Identities=20% Similarity=0.444 Sum_probs=75.8
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..|.++.+.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34557899999999999999999999999999999999999889999999999999999999999999999999976655
Q ss_pred eee
Q 014513 98 RLN 100 (423)
Q Consensus 98 ~~~ 100 (423)
...
T Consensus 87 ~~a 89 (102)
T 1x5s_A 87 DQA 89 (102)
T ss_dssp EEE
T ss_pred EEC
Confidence 543
No 139
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=132.02 Aligned_cols=88 Identities=27% Similarity=0.464 Sum_probs=77.8
Q ss_pred CCCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 014513 12 HQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (423)
Q Consensus 12 ~~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~ 91 (423)
.....+......++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.+++ .|.
T Consensus 6 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 6 SGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 3445566777899999999999999999999999999999999999998999999999999999999999999998 788
Q ss_pred CccceEeee
Q 014513 92 GTEQNFRLN 100 (423)
Q Consensus 92 ~~~~~v~~~ 100 (423)
++.+.|...
T Consensus 85 g~~l~V~~a 93 (116)
T 2cqd_A 85 GRKANVNLA 93 (116)
T ss_dssp TEECEEEES
T ss_pred CEEEEEEEc
Confidence 865555443
No 140
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=133.54 Aligned_cols=76 Identities=22% Similarity=0.369 Sum_probs=73.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
..++|||+|||.++|+++|+++|++||.|.+|.+++++|||||+|.+.++|++|++.|||..|+|+.|+|.||+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999854
No 141
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=130.08 Aligned_cols=87 Identities=48% Similarity=0.913 Sum_probs=78.9
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCee-EEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV-SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~-~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
....+.++|||+|||+++++++|+++|++||.|. +|+|++++.++.++|||||+|.+.++|++|++.|||..+.++...
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4456789999999999999999999999999999 999999999999999999999999999999999999999997733
Q ss_pred --Eeeecccc
Q 014513 97 --FRLNWASF 104 (423)
Q Consensus 97 --v~~~~a~~ 104 (423)
+++.|+..
T Consensus 84 ~~l~v~~a~~ 93 (99)
T 2div_A 84 KRFKLNYATY 93 (99)
T ss_dssp EECCEEETTC
T ss_pred eeEEEeecCC
Confidence 66777754
No 142
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.5e-18 Score=131.33 Aligned_cols=79 Identities=25% Similarity=0.395 Sum_probs=72.1
Q ss_pred CCCcceEEEecCCC-CCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 230 DITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 230 ~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
..+.++|||+|||. .+|+++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..+.|+.|+|.+++++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 35579999999998 99999999999999999999996 8999999999999999999999999999999999998664
Q ss_pred CC
Q 014513 309 VT 310 (423)
Q Consensus 309 ~~ 310 (423)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 143
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=126.17 Aligned_cols=76 Identities=26% Similarity=0.503 Sum_probs=71.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC-------CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-------GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~-------~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
..++|||+|||.++|+++|+++|++||.|.++.+.. .+|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 368999999999999999999999999999999864 4789999999999999999999999999999999999
Q ss_pred ccC
Q 014513 305 RKQ 307 (423)
Q Consensus 305 ~~~ 307 (423)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 144
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=2.8e-18 Score=133.53 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=79.4
Q ss_pred CCCceEEEeCCCC------CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC-
Q 014513 114 GPEHSIFVGDLAP------DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST- 186 (423)
Q Consensus 114 ~~~~~l~vgnLp~------~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g- 186 (423)
..+++|||+|||. ++++++|+++| +.||.|.+|+|++++.||+++|||||+|.+.++|++|++.|||..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4578899999999 99999999999 899999999999999999999999999999999999999999999999
Q ss_pred cceEEecccCCC
Q 014513 187 RPMRISAATPKK 198 (423)
Q Consensus 187 ~~i~v~~a~~~~ 198 (423)
++|+|.++.++.
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999987643
No 145
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=130.46 Aligned_cols=87 Identities=21% Similarity=0.439 Sum_probs=78.0
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcC------CC
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN------GT 88 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~------g~ 88 (423)
..+....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|| +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 344566788999999999999999999999999999999999999899999999999999999999999999 99
Q ss_pred CCCCccceEeeeccc
Q 014513 89 PMPGTEQNFRLNWAS 103 (423)
Q Consensus 89 ~~~~~~~~v~~~~a~ 103 (423)
.|.++. +++.|+.
T Consensus 87 ~~~g~~--l~v~~a~ 99 (111)
T 1x4h_A 87 KLDGRQ--LKVDLAV 99 (111)
T ss_dssp ESSSCE--EEEECCC
T ss_pred EEcCEE--EEEEECC
Confidence 999855 4555554
No 146
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=129.74 Aligned_cols=88 Identities=34% Similarity=0.546 Sum_probs=82.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..++|+.++.+++++|||||+|.+.++|.+|++.||+..+.|++|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHH-HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCcc
Q 014513 192 SAATPKKTT 200 (423)
Q Consensus 192 ~~a~~~~~~ 200 (423)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 147
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.9e-17 Score=129.07 Aligned_cols=88 Identities=24% Similarity=0.423 Sum_probs=81.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC---c
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST---R 187 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g---~ 187 (423)
....+.++|||+|||+++++++|+++| +.||.|..|+|+.++ +++++|||||+|.+.++|++|++.||+..+.+ +
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLF-QPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 344568999999999999999999999 999999999999998 79999999999999999999999999999988 9
Q ss_pred ceEEecccCCCcc
Q 014513 188 PMRISAATPKKTT 200 (423)
Q Consensus 188 ~i~v~~a~~~~~~ 200 (423)
+|+|.++.++...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999887654
No 148
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=9e-18 Score=128.58 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=73.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
.+.++|||+|||.++|+++|+++|++||.|.++.+.. .+|||||+|.+.++|++|++.|||..|+|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4579999999999999999999999999999999986 379999999999999999999999999999999999986
Q ss_pred CCC
Q 014513 307 QDV 309 (423)
Q Consensus 307 ~~~ 309 (423)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 149
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.3e-17 Score=125.74 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=77.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..+.++|||+|||+++++++|+++| +.||.|..+++++++.+++++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHH-GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467899999999999999999999 899999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014513 193 AAT 195 (423)
Q Consensus 193 ~a~ 195 (423)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 150
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=129.72 Aligned_cols=85 Identities=24% Similarity=0.389 Sum_probs=77.4
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
.+....+.++|||+|||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|++.|||..|.++.+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34566788999999999999999999999999999999999999899999999999999999999999999999999766
Q ss_pred eEeee
Q 014513 96 NFRLN 100 (423)
Q Consensus 96 ~v~~~ 100 (423)
.|...
T Consensus 86 ~V~~a 90 (103)
T 2dnm_A 86 RVQVA 90 (103)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55543
No 151
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.9e-17 Score=131.31 Aligned_cols=81 Identities=21% Similarity=0.464 Sum_probs=74.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
...+.++|||+|||..+|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456799999999999999999999999999999999764 6999999999999999999999999999999999
Q ss_pred EcccCCC
Q 014513 303 WGRKQDV 309 (423)
Q Consensus 303 ~a~~~~~ 309 (423)
|++++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9986643
No 152
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=127.96 Aligned_cols=84 Identities=29% Similarity=0.362 Sum_probs=79.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE--------EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCc
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--------AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~--------v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~ 182 (423)
....+.++|||+|||+++++++|+++| +.||.|.. +++++++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHH-TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345567899999999999999999999 89999999 999999999999999999999999999999999999
Q ss_pred eecCcceEEeccc
Q 014513 183 FCSTRPMRISAAT 195 (423)
Q Consensus 183 ~~~g~~i~v~~a~ 195 (423)
.+.|+.|+|.+|.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999998873
No 153
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1e-17 Score=136.27 Aligned_cols=82 Identities=21% Similarity=0.467 Sum_probs=75.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEE
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~ 302 (423)
.....++|||+|||..+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3455789999999999999999999999999999999865 7999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 014513 303 WGRKQDVT 310 (423)
Q Consensus 303 ~a~~~~~~ 310 (423)
||.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99976544
No 154
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.8e-17 Score=126.32 Aligned_cols=82 Identities=16% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++ |++..|.++.+.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 445678999999999999999999999999999999999999899999999999999999999998 9999999976655
Q ss_pred eee
Q 014513 98 RLN 100 (423)
Q Consensus 98 ~~~ 100 (423)
...
T Consensus 84 ~~a 86 (99)
T 2dgs_A 84 KRA 86 (99)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 155
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=128.32 Aligned_cols=86 Identities=23% Similarity=0.438 Sum_probs=80.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCee-EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcc---
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR-GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP--- 188 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~-~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~--- 188 (423)
..+.++|||+|||+++++++|+++| +.||.|. +++|++++.+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAF-ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHH-HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHH-HHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 4467899999999999999999999 8999999 9999999999999999999999999999999999999999999
Q ss_pred -eEEecccCCCc
Q 014513 189 -MRISAATPKKT 199 (423)
Q Consensus 189 -i~v~~a~~~~~ 199 (423)
|+|.++.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999877543
No 156
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=130.06 Aligned_cols=88 Identities=57% Similarity=0.916 Sum_probs=81.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhh-CCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCce-ecCcc
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQ-YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRP 188 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~-~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~-~~g~~ 188 (423)
.+..+.++|||+|||+++++++|+++| +. ||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++.. +.|++
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFF-VKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHH-HHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHH-HHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 455678899999999999999999999 88 9999999999998 89999999999999999999999999999 99999
Q ss_pred eEEecccCCCcc
Q 014513 189 MRISAATPKKTT 200 (423)
Q Consensus 189 i~v~~a~~~~~~ 200 (423)
|+|.++.++...
T Consensus 82 l~v~~a~~~~~~ 93 (104)
T 2dhg_A 82 VRLSVAIPKASR 93 (104)
T ss_dssp CCCCBCCCCCSC
T ss_pred EEEEEccCCCcC
Confidence 999999776554
No 157
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=2.1e-17 Score=134.65 Aligned_cols=88 Identities=27% Similarity=0.437 Sum_probs=82.5
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..|+|++++.+++++|||||+|.+.++|++|++.|++..+.|++|
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHH-TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445677899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 014513 190 RISAATPKK 198 (423)
Q Consensus 190 ~v~~a~~~~ 198 (423)
+|.++.+++
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999998764
No 158
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=127.86 Aligned_cols=77 Identities=31% Similarity=0.445 Sum_probs=72.2
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
.....++|||+|||..+|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456799999999999999999999999999999999875 69999999999999999999999999999999999
Q ss_pred cc
Q 014513 304 GR 305 (423)
Q Consensus 304 a~ 305 (423)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 159
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.5e-17 Score=129.63 Aligned_cols=89 Identities=17% Similarity=0.352 Sum_probs=82.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee---cCc
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STR 187 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~---~g~ 187 (423)
....+.++|||+|||.++++++|+++| +.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..+ .++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLF-EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHH-HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 345567899999999999999999999 8999999999999999999999999999999999999999999987 899
Q ss_pred ceEEecccCCCcc
Q 014513 188 PMRISAATPKKTT 200 (423)
Q Consensus 188 ~i~v~~a~~~~~~ 200 (423)
+|+|.++.++...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876653
No 160
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=130.58 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=73.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhh-cCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeE-eCceEEEEEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLH-FGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHM-IGQQQVRISW 303 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~-~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~-i~g~~l~v~~ 303 (423)
.+.++|||+|||.++|+++|+++|++ ||.|.+|.|..+ +|||||+|.+.++|++|++.|||.. |+|+.|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45699999999999999999999999 999999999875 7999999999999999999999999 9999999999
Q ss_pred cccCCCC
Q 014513 304 GRKQDVT 310 (423)
Q Consensus 304 a~~~~~~ 310 (423)
++++...
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9865443
No 161
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2e-17 Score=131.08 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=82.4
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3345567899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCc
Q 014513 190 RISAATPKKT 199 (423)
Q Consensus 190 ~v~~a~~~~~ 199 (423)
.|.++.++..
T Consensus 99 ~V~~a~~~~~ 108 (110)
T 1oo0_B 99 QVDWCFVKGP 108 (110)
T ss_dssp EEEESEESSC
T ss_pred EEEEcccCCC
Confidence 9999977543
No 162
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=129.64 Aligned_cols=87 Identities=26% Similarity=0.456 Sum_probs=77.8
Q ss_pred CCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 014513 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~ 93 (423)
........+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++. ++..|.++
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 7 GMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp CCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 34455677899999999999999999999999999999999999988999999999999999999999988 99999985
Q ss_pred cceEeeeccc
Q 014513 94 EQNFRLNWAS 103 (423)
Q Consensus 94 ~~~v~~~~a~ 103 (423)
. +++.++.
T Consensus 86 ~--l~V~~a~ 93 (105)
T 2dh8_A 86 N--IDPKPCT 93 (105)
T ss_dssp E--EBCCCSC
T ss_pred E--EEEEEcc
Confidence 4 5555554
No 163
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.5e-17 Score=128.07 Aligned_cols=88 Identities=22% Similarity=0.442 Sum_probs=81.0
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.|| |..|+|++++.+++++|||||+|.+.++|++|+ .||+..+.|++|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIF-KDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHT-TTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHH-HhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 3445567899999999999999999999 8997 999999999999999999999999999999999 899999999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
+|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dng_A 86 RVDIAEGRKQD 96 (103)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEecCCCCC
Confidence 99999876553
No 164
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=128.44 Aligned_cols=88 Identities=24% Similarity=0.447 Sum_probs=81.2
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCC-CCCcceEEEEeCCHHHHHHHHHhhCCceecCcc
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNT-GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~t-g~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~ 188 (423)
.....+.++|||+|||+++++++|+++| +.|| |..|+|++++.+ ++++|||||+|.+.++|++|+ .||+..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHT-TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHH-HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 3444567999999999999999999999 8999 999999999988 999999999999999999999 89999999999
Q ss_pred eEEecccCCCcc
Q 014513 189 MRISAATPKKTT 200 (423)
Q Consensus 189 i~v~~a~~~~~~ 200 (423)
|+|.++.++...
T Consensus 86 l~V~~a~~~~~~ 97 (104)
T 1wi8_A 86 IRVDVADQAQDK 97 (104)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999887654
No 165
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=130.30 Aligned_cols=77 Identities=22% Similarity=0.424 Sum_probs=72.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
++|||+|||+++++++|+++| +.||.|.+++++.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAF-SYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHH-HHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 479999999999999999999 89999999999987 789999999999999999999999999999999999987
Q ss_pred CCc
Q 014513 197 KKT 199 (423)
Q Consensus 197 ~~~ 199 (423)
+..
T Consensus 75 ~~~ 77 (101)
T 2hvz_A 75 MPR 77 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 166
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=4.4e-17 Score=127.54 Aligned_cols=85 Identities=20% Similarity=0.386 Sum_probs=76.2
Q ss_pred CCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 13 QHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 13 ~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
....+....+.++|||+|||+++++++|+++|++|| |.+|+|++++.++.++|||||+|.+.++|.+|+ .|||..|.+
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 5 SSGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 344556677889999999999999999999999997 999999999989999999999999999999999 899999999
Q ss_pred ccceEee
Q 014513 93 TEQNFRL 99 (423)
Q Consensus 93 ~~~~v~~ 99 (423)
+.+.|..
T Consensus 83 ~~l~V~~ 89 (103)
T 2dng_A 83 RSLRVDI 89 (103)
T ss_dssp EECEEEE
T ss_pred eEEEEEE
Confidence 6655544
No 167
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=128.22 Aligned_cols=86 Identities=16% Similarity=0.356 Sum_probs=80.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC---CCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN---TGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~---tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
.+.++|||+|||+++++++|+++| +.||.|..|+|+.++. |++++|||||+|.+.++|++|++.||+..+.|++|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 457889999999999999999999 8999999999999877 679999999999999999999999999999999999
Q ss_pred EecccCCCcc
Q 014513 191 ISAATPKKTT 200 (423)
Q Consensus 191 v~~a~~~~~~ 200 (423)
|.++.++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876553
No 168
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=127.70 Aligned_cols=82 Identities=26% Similarity=0.498 Sum_probs=73.1
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
.+...++.++|||+|||+++++++|+++|++||.|.+|+|++++ ++.++|||||+|.+.++|.+|++.|||..+.++.+
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 34566788999999999999999999999999999999999998 49999999999999999999999999999998655
Q ss_pred eEe
Q 014513 96 NFR 98 (423)
Q Consensus 96 ~v~ 98 (423)
.|.
T Consensus 88 ~V~ 90 (95)
T 2ywk_A 88 NVS 90 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 169
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-17 Score=125.94 Aligned_cols=86 Identities=22% Similarity=0.441 Sum_probs=75.2
Q ss_pred CCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 13 QHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 13 ~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
+...+....+.++|||+|||+++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|.+|++.|||..|.+
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 5 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344456677889999999999999999999999999999999999863 389999999999999999999999999999
Q ss_pred ccceEeee
Q 014513 93 TEQNFRLN 100 (423)
Q Consensus 93 ~~~~v~~~ 100 (423)
+.+.|...
T Consensus 83 ~~l~v~~a 90 (103)
T 2cq3_A 83 RKIEVNNA 90 (103)
T ss_dssp EECEEEEC
T ss_pred EEEEEEEc
Confidence 66555443
No 170
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=129.69 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=82.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCee--------EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCc
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR--------GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~--------~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~ 182 (423)
.+..+.++|||+|||+++++++|+++| +.||.|. .|+|+.++.+++++|||||+|.+.++|++|++.||+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 355578899999999999999999999 9999999 6999999999999999999999999999999999999
Q ss_pred eecCcceEEecccCCCcc
Q 014513 183 FCSTRPMRISAATPKKTT 200 (423)
Q Consensus 183 ~~~g~~i~v~~a~~~~~~ 200 (423)
.+.|+.|+|.++.++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999886653
No 171
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=133.69 Aligned_cols=78 Identities=19% Similarity=0.410 Sum_probs=71.5
Q ss_pred CCcceEEEecCCCCCCHHHHH----HHhhhcCCeEEEEEeC---CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELK----QTFLHFGEIVNVKIPM---GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~----~~F~~~G~I~~v~i~~---~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
.++++|||+|||+.+++++|+ ++|++||.|++|.+.. +||||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 457899999999999999876 6999999999999964 589999999999999999999999999999999999
Q ss_pred cccCC
Q 014513 304 GRKQD 308 (423)
Q Consensus 304 a~~~~ 308 (423)
|+.+.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98653
No 172
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-17 Score=129.17 Aligned_cols=82 Identities=22% Similarity=0.443 Sum_probs=75.6
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
+.++.++|||+|||+++++++|+++|++||.|.+|+|+.++ +|.++|||||+|.+.++|++|++.|||..|.++.+.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999998 99999999999999999999999999999999776665
Q ss_pred eec
Q 014513 99 LNW 101 (423)
Q Consensus 99 ~~~ 101 (423)
...
T Consensus 82 ~a~ 84 (116)
T 2fy1_A 82 QAK 84 (116)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 173
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8e-17 Score=128.50 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=74.7
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...+..++|||+|||+++++++|+++|++||.|.+|+|++++ ++.++|||||+|.+.++|++|++.|||..|.++.+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 445678999999999999999999999999999999999998 6999999999999999999999999999999976666
Q ss_pred eee
Q 014513 98 RLN 100 (423)
Q Consensus 98 ~~~ 100 (423)
.+.
T Consensus 89 ~~a 91 (114)
T 2do0_A 89 KMD 91 (114)
T ss_dssp EEC
T ss_pred EEc
Confidence 553
No 174
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=3.5e-17 Score=131.44 Aligned_cols=82 Identities=27% Similarity=0.365 Sum_probs=75.6
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.|||..|.++.+.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45667899999999999999999999999999999999999889999999999999999999999999999999976655
Q ss_pred ee
Q 014513 98 RL 99 (423)
Q Consensus 98 ~~ 99 (423)
..
T Consensus 115 ~~ 116 (118)
T 2khc_A 115 QL 116 (118)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 175
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3.9e-17 Score=123.87 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=71.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~ 308 (423)
..++|||+|||.++|+++|+++|++| .|.++.+.+++|||||+|.+.++|++|++.|||..++|++|+|+++....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46899999999999999999999999 99999998889999999999999999999999999999999999987543
No 176
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=125.82 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=77.8
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVS--------IKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~ 86 (423)
..+..+...++|||+|||+++++++|+++|++||.|.+ |+++.++.+|.++|||||+|.+.++|++|++.||
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 44566778899999999999999999999999999999 9999998899999999999999999999999999
Q ss_pred CCCCCCccceEee
Q 014513 87 GTPMPGTEQNFRL 99 (423)
Q Consensus 87 g~~~~~~~~~v~~ 99 (423)
|..+.++.+.|..
T Consensus 85 g~~~~g~~l~V~~ 97 (99)
T 2la6_A 85 GKEFSGNPIKVSF 97 (99)
T ss_dssp TCBSSSSBCEEEE
T ss_pred CCEeCCcEEEEEe
Confidence 9999997666543
No 177
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=4.2e-17 Score=123.44 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=75.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 44567899999999999999999999 999999999999999999999999999999999999997 5888999999999
Q ss_pred ecc
Q 014513 192 SAA 194 (423)
Q Consensus 192 ~~a 194 (423)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 178
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-17 Score=125.29 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=69.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEe--CCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP--MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~--~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
...+.++|||+|||.++|+++|+++|++||.|.-+... ..+|||||+|.+.++|++|++.|||..|+|+.|+|.++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 34567999999999999999999999999988322221 1479999999999999999999999999999999999997
Q ss_pred CCC
Q 014513 307 QDV 309 (423)
Q Consensus 307 ~~~ 309 (423)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 179
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=127.34 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=75.8
Q ss_pred CCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC-CCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT-GQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~-g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
...+......++|||+|||+++++++|+++|++|| |.+|+|++++.+ +.++|||||+|.+.++|++|+ .||+..|.+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34456667889999999999999999999999999 999999999877 999999999999999999999 999999999
Q ss_pred ccceEeee
Q 014513 93 TEQNFRLN 100 (423)
Q Consensus 93 ~~~~v~~~ 100 (423)
+.+.|...
T Consensus 84 ~~l~V~~a 91 (104)
T 1wi8_A 84 KRIRVDVA 91 (104)
T ss_dssp EECEEEEC
T ss_pred cEEEEEEc
Confidence 66555443
No 180
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=129.01 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=73.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCC-eEEEEEe-------CCCcEEEEEeCChHHHHHHHHHhC--CeEeCceEEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGE-IVNVKIP-------MGRGCGFVQFAARASAEEAILRMQ--GHMIGQQQVR 300 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~-I~~v~i~-------~~~g~aFV~F~~~~~A~~Al~~l~--g~~i~g~~l~ 300 (423)
.+.++|||+|||.++|+++|+++|++||. |.++.++ .++|||||+|.+.++|++|++.|| +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34699999999999999999999999998 9999998 468999999999999999999996 5889999999
Q ss_pred EEEcccCCCC
Q 014513 301 ISWGRKQDVT 310 (423)
Q Consensus 301 v~~a~~~~~~ 310 (423)
|.||+++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999976543
No 181
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=1.1e-16 Score=129.60 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=90.4
Q ss_pred cCCCCCCCccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEE
Q 014513 85 YNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164 (423)
Q Consensus 85 l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV 164 (423)
++|..+.+....+...... ..........+.++|||+|||+++++++|+++| +.||.|..|+|+.++ +|+++|||||
T Consensus 5 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~-~g~~~g~afV 81 (124)
T 2kt5_A 5 TGGQQMGRDPDKWQHDLFD-SGCGGGEGVETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDR-SGRSLGTADV 81 (124)
T ss_dssp CCCCCCCCCCCCCCCCCCC-CCCCCCCCCSSCEEEEEESCCSSCCHHHHHHHH-HTTSCCSEEEEECCS-SSSCCSEEEE
T ss_pred cCcccccCCCccccccccc-cCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEECC-CCCEeeEEEE
Confidence 3555655544433322221 111223344567899999999999999999999 899999999999998 8999999999
Q ss_pred EeCCHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 165 ~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
+|.+.++|++|++.+|+..+.|+.|+|.++.+...
T Consensus 82 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 82 HFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp EESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 99999999999999999999999999999977554
No 182
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=127.82 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=76.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
.....++|||+|||+++|+++|+++| +.||.|.+|+|++++. |+++|||||+|.+.++|.+|+. +++..+.|+.|.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F-~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWL-EDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHH-HTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHH-hhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 34457899999999999999999999 8999999999999987 9999999999999999999999 8999999999999
Q ss_pred ecccC
Q 014513 192 SAATP 196 (423)
Q Consensus 192 ~~a~~ 196 (423)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 87654
No 183
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=7e-17 Score=127.06 Aligned_cols=87 Identities=20% Similarity=0.420 Sum_probs=76.0
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC-CCccc
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM-PGTEQ 95 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~-~~~~~ 95 (423)
+....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..+ .+...
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 35566889999999999999999999999999999999999998999999999999999999999999999886 22234
Q ss_pred eEeeeccc
Q 014513 96 NFRLNWAS 103 (423)
Q Consensus 96 ~v~~~~a~ 103 (423)
.+++.++.
T Consensus 87 ~l~v~~a~ 94 (106)
T 2dgp_A 87 PIQVKPAD 94 (106)
T ss_dssp CCEEEECC
T ss_pred eEEEEECC
Confidence 55555554
No 184
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=125.44 Aligned_cols=86 Identities=30% Similarity=0.465 Sum_probs=74.8
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
.......+.++|||+|||+++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|.+|++.||+..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3445667889999999999999999999999999999999999863 36899999999999999999999999999855
Q ss_pred ceEeeecccc
Q 014513 95 QNFRLNWASF 104 (423)
Q Consensus 95 ~~v~~~~a~~ 104 (423)
+++.|+..
T Consensus 85 --l~V~~a~~ 92 (103)
T 2cqi_A 85 --VKVNWATT 92 (103)
T ss_dssp --EEEEECCC
T ss_pred --EEEEECCC
Confidence 55556543
No 185
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=124.99 Aligned_cols=78 Identities=23% Similarity=0.474 Sum_probs=70.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEe--CCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP--MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~--~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
....++|||+|||.++|+++|+++|++||.|. +.+. .++|||||+|.+.++|++|++.|||..|+|+.|+|++++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34568999999999999999999999999995 4443 56899999999999999999999999999999999999865
Q ss_pred C
Q 014513 308 D 308 (423)
Q Consensus 308 ~ 308 (423)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 186
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.3e-17 Score=126.96 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=76.5
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
.+....+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34456678999999999999999999999999999999999999899999999999999999999999999999999666
Q ss_pred eEee
Q 014513 96 NFRL 99 (423)
Q Consensus 96 ~v~~ 99 (423)
.|..
T Consensus 96 ~V~~ 99 (106)
T 1p27_B 96 SVDW 99 (106)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
No 187
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=4e-18 Score=167.17 Aligned_cols=156 Identities=15% Similarity=0.287 Sum_probs=111.1
Q ss_pred HHHHhhccCCeeEEEEEecCC--CCCCcceE-----EEEEcCHHHHHHHHHHcCCCCCCCccc-------------eEee
Q 014513 40 LSSCFAHTGEVVSIKIIRNKI--TGQPEGYG-----FVEFVSHAAAERVLQTYNGTPMPGTEQ-------------NFRL 99 (423)
Q Consensus 40 L~~~F~~~G~v~~v~i~~~~~--~g~~~g~a-----fVeF~~~~~A~~al~~l~g~~~~~~~~-------------~v~~ 99 (423)
|..+|..+++|..|..+.... .....+++ |++|.+..++..++..++......... .+.
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~- 87 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK- 87 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 788999999998884443210 11223333 778877665544443222211111000 000
Q ss_pred eccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh
Q 014513 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (423)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~ 179 (423)
.|. ..........+.++|||+|||+.+|+++|.++| +.||.|..|.|+.++.|++++|||||+|.+.++|.+||..|
T Consensus 88 ~~~--p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 88 MWD--PHNDPNAQGDAFKTLFVARVNYDTTESKLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hcC--CcccccccCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 011 011112233456899999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCceecCcceEEecccCCCc
Q 014513 180 NGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 180 ~g~~~~g~~i~v~~a~~~~~ 199 (423)
||..|.|+.|.|.++.++..
T Consensus 165 ng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCCEECCEEEEEEEeCCCCC
Confidence 99999999999999987544
No 188
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=1.2e-17 Score=127.31 Aligned_cols=78 Identities=22% Similarity=0.484 Sum_probs=70.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeec
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTG--EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~ 101 (423)
.+|||+|||+++++++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|++|++.|||..+.|+.+.|....
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999776665543
No 189
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=127.07 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=79.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
.....++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 44457889999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 014513 192 SAATPK 197 (423)
Q Consensus 192 ~~a~~~ 197 (423)
.++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998654
No 190
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=127.65 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=75.0
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
......++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|++|++.|||..|.++.+.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 44556789999999999999999999999999999999999889999999999999999999999999999999976665
Q ss_pred ee
Q 014513 98 RL 99 (423)
Q Consensus 98 ~~ 99 (423)
.+
T Consensus 90 ~~ 91 (98)
T 2cqp_A 90 VL 91 (98)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 191
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=3.1e-17 Score=131.16 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=88.8
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
.++..++|||+|||+++++++|+++|+.||.|.+|+++++ +.++|||||+|.+.++|.+|++.|||..+.|+.+.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3567889999999999999999999999999999999875 4568999999999999999999999999999766554
Q ss_pred eeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCC
Q 014513 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143 (423)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~ 143 (423)
....... . .+++...++++|.++| +.||.
T Consensus 81 ~a~~~~~--~-------------~~~~~~~~~~~l~~~~-~~~g~ 109 (115)
T 3lqv_A 81 YYNANRA--F-------------QKMDTKKKEEQLKLLK-EKYGI 109 (115)
T ss_dssp ECCHHHH--T-------------TTSCHHHHHHHHHHHH-HHHCC
T ss_pred EecCChh--h-------------hhhhHhHhHHHHHHHH-HHhCC
Confidence 4332211 1 4667788999999999 78874
No 192
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=128.35 Aligned_cols=89 Identities=29% Similarity=0.413 Sum_probs=82.6
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..|+|+.++.+++++|||||+|.+.++|++|+.. ++..+.|+.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3455678899999999999999999999 8999999999999999999999999999999999999998 9999999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
.|.++.++...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999877653
No 193
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=4e-17 Score=126.27 Aligned_cols=78 Identities=32% Similarity=0.570 Sum_probs=72.9
Q ss_pred CCcceEEEecCCCCCCHHHHH----HHhhhcCCeEEEEEeC---CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELK----QTFLHFGEIVNVKIPM---GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~----~~F~~~G~I~~v~i~~---~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
.++++|||+|||.++|+++|+ ++|++||.|.++.+.. ++|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457999999999999999999 9999999999999973 589999999999999999999999999999999999
Q ss_pred cccCC
Q 014513 304 GRKQD 308 (423)
Q Consensus 304 a~~~~ 308 (423)
++++.
T Consensus 86 a~~~~ 90 (97)
T 1nu4_A 86 AKTDS 90 (97)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 98653
No 194
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=137.75 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=78.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g--~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..++|||+|||+++++++|+++| +.|| .|.+|+|+.|+.||+++|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 45789999999999999999999 8999 99999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc
Q 014513 193 AATPKKT 199 (423)
Q Consensus 193 ~a~~~~~ 199 (423)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9977543
No 195
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=123.94 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=77.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCC-CcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGR-SKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~-~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
..++|||+|||+++++++|+++| +.||.|..++++.++.++. ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 46789999999999999999999 8999999999999988766 999999999999999999999999999999999999
Q ss_pred ccCCC
Q 014513 194 ATPKK 198 (423)
Q Consensus 194 a~~~~ 198 (423)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 196
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.4e-17 Score=125.50 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=73.5
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
...+.++|||+|||+++++++|+++|++||.|.+|+|++++. |.++|||||+|.+.++|.+|++ +++..+.|+.+.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999986 9999999999999999999997 89999999887776
Q ss_pred ee
Q 014513 99 LN 100 (423)
Q Consensus 99 ~~ 100 (423)
..
T Consensus 85 ~~ 86 (103)
T 1s79_A 85 FK 86 (103)
T ss_dssp EH
T ss_pred Ec
Confidence 53
No 197
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=122.37 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=78.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
.....++|||+|||+++++++|+++| +.| .|.+++|+++ .+|+++|||||+|.+.++|.+|++ +|+..+.|+.|.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F-~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFL-APL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHH-TTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHH-hhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 44567899999999999999999999 899 9999999999 789999999999999999999999 9999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.++..
T Consensus 82 ~~a~~~~~ 89 (91)
T 2dgw_A 82 FREKSGPS 89 (91)
T ss_dssp EEESSCCC
T ss_pred EECCcCCC
Confidence 99987643
No 198
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=5.8e-17 Score=123.19 Aligned_cols=74 Identities=24% Similarity=0.487 Sum_probs=69.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
.++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|+ .|||..|+|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 589999999999999999999999999999999864 799999999999999999 9999999999999999885
Q ss_pred C
Q 014513 307 Q 307 (423)
Q Consensus 307 ~ 307 (423)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 199
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=7e-17 Score=127.62 Aligned_cols=86 Identities=27% Similarity=0.479 Sum_probs=76.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|.+|+|++++.+|+++|||||+|.+.++|++|+..+ +..+.|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44567899999999999999999999 99999999999999999999999999999999999999976 59999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 200
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=122.45 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=71.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
...++|||+|||.++|+++|+++|++| .|.++.|+.+ +|||||+|.+.++|++|+. |||..|+|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 457999999999999999999999999 9999999864 7899999999999999999 99999999999999998
Q ss_pred cCC
Q 014513 306 KQD 308 (423)
Q Consensus 306 ~~~ 308 (423)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 664
No 201
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=5.9e-17 Score=123.14 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=76.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEeccc
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~ 195 (423)
.++|||+|||+++++++|+++| +.||.|.+++++.++.+++++|||||+|.+.++|++|+ .+|+..+.|+.|+|.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 5789999999999999999999 89999999999999999999999999999999999999 899999999999999987
Q ss_pred CC
Q 014513 196 PK 197 (423)
Q Consensus 196 ~~ 197 (423)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 202
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-17 Score=127.19 Aligned_cols=83 Identities=25% Similarity=0.499 Sum_probs=76.2
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
+....+.++|||+|||+++++++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34566789999999999999999999999999999999999988999999999999999999999999999999997665
Q ss_pred Eee
Q 014513 97 FRL 99 (423)
Q Consensus 97 v~~ 99 (423)
|..
T Consensus 100 V~~ 102 (108)
T 2jrs_A 100 VGH 102 (108)
T ss_dssp EEC
T ss_pred EEE
Confidence 543
No 203
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=124.67 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 014513 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~ 93 (423)
...+....+.++|||+|||+++++++|+++|++||.|.+|+|..+ +.++|||||+|.+.++|++|++.||+..|.++
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 344456778899999999999999999999999999999999654 56889999999999999999999999999986
Q ss_pred cceEeeeccc
Q 014513 94 EQNFRLNWAS 103 (423)
Q Consensus 94 ~~~v~~~~a~ 103 (423)
.+ ++.|+.
T Consensus 90 ~l--~V~~a~ 97 (109)
T 1x4a_A 90 RL--RVEFPR 97 (109)
T ss_dssp EC--EEECCC
T ss_pred EE--EEEEcc
Confidence 54 555554
No 204
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.2e-17 Score=130.99 Aligned_cols=84 Identities=29% Similarity=0.427 Sum_probs=79.0
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|.+++|++++.+++++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTF-LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHT-TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445567899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 014513 190 RISAA 194 (423)
Q Consensus 190 ~v~~a 194 (423)
+|.++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 99876
No 205
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=125.22 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=76.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
.+.++|||+|||+++++++|+++| +.||.|..++|+.++.+++++|||||+|.+.++|++|++.|||..+.|+.+++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLC-QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTS-TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 457899999999999999999999 8999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 014513 194 AT 195 (423)
Q Consensus 194 a~ 195 (423)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 206
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=133.60 Aligned_cols=89 Identities=25% Similarity=0.503 Sum_probs=83.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
......++|||+|||.++++++|+++| +.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLF-ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHH-HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCcc
Q 014513 191 ISAATPKKTT 200 (423)
Q Consensus 191 v~~a~~~~~~ 200 (423)
|.++.++...
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999887654
No 207
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.9e-17 Score=120.61 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=72.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 118 ~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
+|||+|||+++++++|+++| +.||.|.+++++.++.+++++|||||+|.+.++|++|++ +++..+.|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999 899999999999999999999999999999999999998 9999999999999875
No 208
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=127.08 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=71.5
Q ss_pred CCCcceEEEecCCCCC------CHHHHHHHhhhcCCeEEEEEeC----CCcEEEEEeCChHHHHHHHHHhCCeEeCce-E
Q 014513 230 DITNTTIFVGNLDPNV------TEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQ-Q 298 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~------te~~L~~~F~~~G~I~~v~i~~----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~-~ 298 (423)
....++|||+|||..+ |+++|+++|++||.|.+|.|++ ++|||||+|.+.++|++|+..|||..|+|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3446899999999999 7899999999999999999984 479999999999999999999999999998 9
Q ss_pred EEEEEcccC
Q 014513 299 VRISWGRKQ 307 (423)
Q Consensus 299 l~v~~a~~~ 307 (423)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 209
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=135.27 Aligned_cols=87 Identities=15% Similarity=0.323 Sum_probs=80.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE--EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCc----eec
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV----FCS 185 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~--v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~----~~~ 185 (423)
.....++|||+|||+++++++|+++| +.||.|.. |+|++|+.||+++|||||+|.+. +|.+|+..||+. .+.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGAL-APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHH-GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 44567899999999999999999999 89999976 99999999999999999999999 999999999999 999
Q ss_pred CcceEEecccCCCcc
Q 014513 186 TRPMRISAATPKKTT 200 (423)
Q Consensus 186 g~~i~v~~a~~~~~~ 200 (423)
|+.|+|.++.++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999876543
No 210
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=2.8e-17 Score=127.81 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=73.6
Q ss_pred CCccEEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC-c
Q 014513 21 EEVRTLWIGDLQY------WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG-T 93 (423)
Q Consensus 21 ~~~r~l~V~nLp~------~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~-~ 93 (423)
...++|||+|||+ ++++++|+++|++||.|.+|+|++++.||.++|||||+|.+.++|.+|++.|||..+.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3568999999999 99999999999999999999999999899999999999999999999999999999998 7
Q ss_pred cceEee
Q 014513 94 EQNFRL 99 (423)
Q Consensus 94 ~~~v~~ 99 (423)
.+.|..
T Consensus 84 ~l~V~~ 89 (100)
T 3ns6_A 84 RLFLYT 89 (100)
T ss_dssp BCEEEE
T ss_pred EEEEEE
Confidence 666654
No 211
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=8.7e-17 Score=126.75 Aligned_cols=83 Identities=31% Similarity=0.427 Sum_probs=78.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
....+.++|||+|||+++++++|+++| +.||.|..++|+.++ +|+++|||||+|.+.++|++|++.||+..+.|++|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345568899999999999999999999 899999999999998 899999999999999999999999999999999999
Q ss_pred Eeccc
Q 014513 191 ISAAT 195 (423)
Q Consensus 191 v~~a~ 195 (423)
|.+++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 212
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=9e-17 Score=130.64 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=82.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
....+.++|||+|||+++++++|+++| +.||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344567899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCcc
Q 014513 191 ISAATPKKTT 200 (423)
Q Consensus 191 v~~a~~~~~~ 200 (423)
|.++.++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999776544
No 213
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=128.77 Aligned_cols=79 Identities=24% Similarity=0.427 Sum_probs=72.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
...++|||+|||.++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|++||+. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34689999999999999999999999999999999874 68999999999999999998 999999999999999
Q ss_pred ccCCCC
Q 014513 305 RKQDVT 310 (423)
Q Consensus 305 ~~~~~~ 310 (423)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 976543
No 214
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=6.6e-17 Score=119.38 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=69.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
.+..|||+||++.+|+++|+++| .+||+|.++++.. +||||||+|.++++|++|++.||+..+.|++|+|..|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF-~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLC-MQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHH-HHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHH-HhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 36789999999999999999999 9999999999865 6999999999999999999999999999999999998
Q ss_pred c
Q 014513 195 T 195 (423)
Q Consensus 195 ~ 195 (423)
+
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 215
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.8e-17 Score=127.63 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=72.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
....++|||+|||+++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|++|++.||+..|.++.+.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 33568999999999999999999999999999999999988999999999999999999999999999999997665543
No 216
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.2e-17 Score=126.90 Aligned_cols=85 Identities=33% Similarity=0.563 Sum_probs=80.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
+.++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|++|++.+||..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 46789999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 014513 195 TPKKTT 200 (423)
Q Consensus 195 ~~~~~~ 200 (423)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 887654
No 217
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-16 Score=123.22 Aligned_cols=88 Identities=25% Similarity=0.339 Sum_probs=80.7
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
+....+.++|||+|||+++++++|+++| +.||.|..|+|+.++.+++++|||||+|.+.++|++|+. +++.+.|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 4455667899999999999999999999 899999999999999999999999999999999999998 5789999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
.|.++.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999886553
No 218
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=3.1e-17 Score=126.35 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=76.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..+.++|||+|||+++++++|+++| +.||.|..++++.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 3356899999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 014513 193 AATP 196 (423)
Q Consensus 193 ~a~~ 196 (423)
++.+
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8754
No 219
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=7.5e-17 Score=122.03 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=72.3
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
+....+.++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++ +++..+.|+.+.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3556788999999999999999999999999999999999999899999999999999999999995 588888886655
Q ss_pred Ee
Q 014513 97 FR 98 (423)
Q Consensus 97 v~ 98 (423)
++
T Consensus 84 v~ 85 (87)
T 3s7r_A 84 PK 85 (87)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 220
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-17 Score=127.81 Aligned_cols=83 Identities=28% Similarity=0.592 Sum_probs=76.0
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
+...++.++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|||..+.++.+.
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 44556789999999999999999999999999999999999988999999999999999999999999999999997655
Q ss_pred Eee
Q 014513 97 FRL 99 (423)
Q Consensus 97 v~~ 99 (423)
|..
T Consensus 82 v~~ 84 (104)
T 1p1t_A 82 VDN 84 (104)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 221
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3e-17 Score=134.37 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=74.4
Q ss_pred CCCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC
Q 014513 12 HQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE---VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT 88 (423)
Q Consensus 12 ~~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~ 88 (423)
++.......++.++|||+|||+++++++|+++|++||. |.+|+|++++. |+++|||||+|.+.++|++||+ +|+.
T Consensus 33 g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~ 110 (136)
T 2hgl_A 33 GSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE 110 (136)
T ss_dssp --CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 33333455677899999999999999999999999999 89999999985 9999999999999999999998 9999
Q ss_pred CCCCccceEee
Q 014513 89 PMPGTEQNFRL 99 (423)
Q Consensus 89 ~~~~~~~~v~~ 99 (423)
.|.++.+.|..
T Consensus 111 ~l~gr~i~V~~ 121 (136)
T 2hgl_A 111 SMGHRYIEVFK 121 (136)
T ss_dssp ESSSSEEEEEE
T ss_pred EECCEEEEEEE
Confidence 99997655543
No 222
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-17 Score=123.85 Aligned_cols=77 Identities=27% Similarity=0.361 Sum_probs=71.9
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
..+.++|||+|||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..+.++.++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 35778999999999999999999999999999999999988999999999999999999999999999999885543
No 223
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=124.06 Aligned_cols=82 Identities=27% Similarity=0.384 Sum_probs=69.4
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC---CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM---GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~---~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
...+.++|||+|||.++|+++|+++|+.|+.|..+.-.. .+|||||+|.+.++|++|++.|||+.|+|+.|+|.+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345679999999999999999999999886544333221 26999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014513 306 KQDVT 310 (423)
Q Consensus 306 ~~~~~ 310 (423)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 224
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=1.4e-16 Score=125.85 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=69.6
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEE
Q 014513 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v 301 (423)
+...+.++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|+..+ +..|+|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44556799999999999999999999999999999999764 689999999999999999987 48899999999
Q ss_pred EEcccCCC
Q 014513 302 SWGRKQDV 309 (423)
Q Consensus 302 ~~a~~~~~ 309 (423)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986543
No 225
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=122.55 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=76.1
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~----~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
...++|||+|||+++++++|+ ++| +.||.|.+|+|++++.+ +|||||+|.+.++|++|++.|||..+.|++|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAF-ARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 356789999999999999999 999 89999999999999765 8999999999999999999999999999999
Q ss_pred EEecccCCCc
Q 014513 190 RISAATPKKT 199 (423)
Q Consensus 190 ~v~~a~~~~~ 199 (423)
+|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999977654
No 226
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=2.8e-17 Score=147.42 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=69.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcC--CeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFG--EIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
..++|||+||+.++|+++|+++|++|| .|++|.|+.+ ||||||+|.+.++|++||+.|||+.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 468999999999999999999999999 9999999764 69999999999999999999999999999999999
Q ss_pred ccc
Q 014513 304 GRK 306 (423)
Q Consensus 304 a~~ 306 (423)
|++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 974
No 227
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=123.97 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=71.4
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
..+...++|||+|||+++++++|+++|++||.+ +|+|+.++ +++++|||||+|.+.++|++|| .+|+..|.++.+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 456677899999999999999999999999955 99999998 9999999999999999999999 57999999987666
Q ss_pred ee
Q 014513 98 RL 99 (423)
Q Consensus 98 ~~ 99 (423)
..
T Consensus 87 ~~ 88 (102)
T 1wez_A 87 FL 88 (102)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 228
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=124.68 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=71.8
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVS-IKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
....+.++|||+|||+++++++|+++|++||.|.+ |+|+.+ .+|+++|||||+|.++++|++||+. ++..|.++.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 44567789999999999999999999999999987 888888 5999999999999999999999986 99999998666
Q ss_pred Eee
Q 014513 97 FRL 99 (423)
Q Consensus 97 v~~ 99 (423)
|..
T Consensus 88 v~~ 90 (104)
T 1wg5_A 88 IFK 90 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 229
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1.2e-16 Score=126.01 Aligned_cols=82 Identities=23% Similarity=0.411 Sum_probs=75.2
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
+...+..++|||+|||+.+++++|+++|++||.|.+|+|+.++ +|.++|||||+|.+.++|++|++.|||..|.++.+.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4556788999999999999999999999999999999999998 999999999999999999999999999999996666
Q ss_pred Eee
Q 014513 97 FRL 99 (423)
Q Consensus 97 v~~ 99 (423)
|.+
T Consensus 102 V~~ 104 (107)
T 3ulh_A 102 IQL 104 (107)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 230
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=124.98 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=78.1
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG-AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~-v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
+.....++|||+|||+++++++|+++| +.||.|.. |+|+.+ .+|+++|||||+|.+.++|++|++. ++..+.+|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFF-SGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHT-TTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 344567899999999999999999999 89999998 889888 7899999999999999999999997 9999999999
Q ss_pred EEecccCCCc
Q 014513 190 RISAATPKKT 199 (423)
Q Consensus 190 ~v~~a~~~~~ 199 (423)
+|.++.++..
T Consensus 87 ~v~~~~~~~~ 96 (104)
T 1wg5_A 87 EIFKSSRAEV 96 (104)
T ss_dssp EEEEECTTTS
T ss_pred EEEECCHHHH
Confidence 9998876543
No 231
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=132.26 Aligned_cols=85 Identities=22% Similarity=0.334 Sum_probs=77.0
Q ss_pred CCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 014513 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~ 93 (423)
........+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.|||..|.++
T Consensus 54 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 54 GGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34445667889999999999999999999999999999999999988999999999999999999999999999999986
Q ss_pred cceEe
Q 014513 94 EQNFR 98 (423)
Q Consensus 94 ~~~v~ 98 (423)
.+.|.
T Consensus 134 ~l~v~ 138 (140)
T 2ku7_A 134 TIRVN 138 (140)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65543
No 232
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=126.98 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=79.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHH---HHHHhhCCCeeEEEEeeCCCCC---CCcceEEEEeCCHHHHHHHHHhhCCceec
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQ---ETFRSQYPSVRGAKVVTDPNTG---RSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~---~~F~~~~g~v~~v~i~~~~~tg---~~~G~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
.....++|||+|||+++++++|+ ++| +.||.|.+++|++++.++ +++|||||+|.+.++|++|++.||+..+.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYF-GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTT-TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHh-hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 34457899999999999999999 999 999999999999998754 56699999999999999999999999999
Q ss_pred CcceEEecccCCCc
Q 014513 186 TRPMRISAATPKKT 199 (423)
Q Consensus 186 g~~i~v~~a~~~~~ 199 (423)
|++|+|.++.++..
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999988764
No 233
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=122.49 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=73.9
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
.+....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++ ++..|.++.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~- 84 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW- 84 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE-
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE-
Confidence 44566788999999999999999999999999999999999999899999999999999999999997 567788754
Q ss_pred eEeeeccc
Q 014513 96 NFRLNWAS 103 (423)
Q Consensus 96 ~v~~~~a~ 103 (423)
+.+.++.
T Consensus 85 -l~v~~a~ 91 (103)
T 2cqg_A 85 -CDCKLPN 91 (103)
T ss_dssp -EEEECCC
T ss_pred -EEEEecC
Confidence 4555554
No 234
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-17 Score=120.08 Aligned_cols=76 Identities=29% Similarity=0.508 Sum_probs=73.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
++|||+|||+++++++|+++| +.||.|..++++.++.+|+++|||||+|.+.++|++|++.++ ..+.|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999 999999999999999999999999999999999999999999 9999999999876
No 235
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=123.41 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCC--CCCC
Q 014513 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG--TPMP 91 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g--~~~~ 91 (423)
+++..++.+.++|||+|||++++|++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++ ..|.
T Consensus 7 ~~~~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 7 HHHHGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp -----CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred ccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 445567788999999999999999999999999999999999875 59999999999999999998864 6777
Q ss_pred CccceEeeecccc
Q 014513 92 GTEQNFRLNWASF 104 (423)
Q Consensus 92 ~~~~~v~~~~a~~ 104 (423)
|+ ++++.|+..
T Consensus 81 Gr--~l~V~~A~~ 91 (105)
T 1sjq_A 81 GQ--PIYIQFSNH 91 (105)
T ss_dssp TE--ECCBCCCSS
T ss_pred CE--EEEEEEcCC
Confidence 75 556666643
No 236
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.2e-16 Score=124.88 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=69.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcE-EEEEeCChHHHHHHHHHhCCeEeCc--eEEEEEEcccCCC
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGC-GFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQDV 309 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~-aFV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~a~~~~~ 309 (423)
...|||+||+..+|+++|+++|++||.|.+|.|....|| |||+|.+.++|.+|++.|||..|.| +.|+|.+|+++..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 345789999999999999999999999999999766696 9999999999999999999999976 6999999997643
No 237
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=3e-16 Score=120.02 Aligned_cols=80 Identities=26% Similarity=0.450 Sum_probs=72.4
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
...+.++|||+|||+++++++|+++|++||.|.+|+|+++ ++.++|||||+|.+.++|++|++.|||..+.++.+.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999999984 78999999999999999999999999999999766555
Q ss_pred ee
Q 014513 99 LN 100 (423)
Q Consensus 99 ~~ 100 (423)
..
T Consensus 82 ~a 83 (92)
T 2dgv_A 82 ID 83 (92)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 238
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=126.38 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=72.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCe----EEEEEeC--CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEI----VNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I----~~v~i~~--~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
..+.++|||+|||.++|+++|+++|++||.| ..+.+.. ++|||||+|.+.++|++|++.|||..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999998 5666654 479999999999999999999999999999999999
Q ss_pred cccCCCC
Q 014513 304 GRKQDVT 310 (423)
Q Consensus 304 a~~~~~~ 310 (423)
|+++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9976543
No 239
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=124.33 Aligned_cols=80 Identities=28% Similarity=0.361 Sum_probs=71.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC--CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 229 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~--~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
.....++|||+|||..+|+++|+++|++||.|..+ ... ++|||||+|.+.++|++|+..|||..|+|+.|+|.++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34567999999999999999999999999999887 222 479999999999999999999999999999999999986
Q ss_pred CCC
Q 014513 307 QDV 309 (423)
Q Consensus 307 ~~~ 309 (423)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 240
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.8e-17 Score=128.68 Aligned_cols=84 Identities=25% Similarity=0.427 Sum_probs=79.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
+.++|||+|||+++++++|+++| +.||.|..|+|+.++.+++++|||||+|.+.++|++|++. ++..+.|+.|+|.++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 45889999999999999999999 9999999999999999999999999999999999999997 999999999999999
Q ss_pred cCCCcc
Q 014513 195 TPKKTT 200 (423)
Q Consensus 195 ~~~~~~ 200 (423)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887654
No 241
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.3e-16 Score=129.38 Aligned_cols=75 Identities=24% Similarity=0.493 Sum_probs=70.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
..++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|+ .|||..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999753 799999999999999999 899999999999999998
Q ss_pred cC
Q 014513 306 KQ 307 (423)
Q Consensus 306 ~~ 307 (423)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 242
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=122.27 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC--CCC
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP--MPG 92 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~--~~~ 92 (423)
.++....++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++.. +.|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455667899999999999999999999999999999998864 6999999999999999999887654 777
Q ss_pred ccceEeeeccc
Q 014513 93 TEQNFRLNWAS 103 (423)
Q Consensus 93 ~~~~v~~~~a~ 103 (423)
+.+ ++.++.
T Consensus 81 r~l--~V~~a~ 89 (104)
T 1wex_A 81 QQA--FFNYST 89 (104)
T ss_dssp SBC--EEEECS
T ss_pred EEE--EEEEcc
Confidence 554 555554
No 243
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.9e-16 Score=133.80 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=81.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..|+|+.++.+++++|||||+|.+.++|++|++.||+..+.+++|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987544
No 244
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=124.73 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
.....++|||+|||+++|+++|+++| +.||. ..|+|++++ +++++|||||+|.+.++|++|++ +|+..+.+|.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFF-SPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSS-CSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 44567899999999999999999999 89995 599999998 89999999999999999999995 7999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
..+.+...
T Consensus 87 ~~~~~~~~ 94 (102)
T 1wez_A 87 FLNSTAGT 94 (102)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
Confidence 98876543
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=126.14 Aligned_cols=87 Identities=13% Similarity=0.226 Sum_probs=80.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCC-eeEEEEe-eCCCCCCCcceEEEEeCCHHHHHHHHHhhC--CceecCcc
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVV-TDPNTGRSKGYGFVKFLDENERNRAMTEMN--GVFCSTRP 188 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~-v~~v~i~-~~~~tg~~~G~afV~f~~~~~a~~a~~~~~--g~~~~g~~ 188 (423)
+.+.++|||+|||+++++++|+++| +.||. |.++.++ .++.+|+++|||||+|.+.++|.+|++.|+ +..+.|+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3467899999999999999999999 89998 9999999 888899999999999999999999999996 58999999
Q ss_pred eEEecccCCCcc
Q 014513 189 MRISAATPKKTT 200 (423)
Q Consensus 189 i~v~~a~~~~~~ 200 (423)
|+|.++.++...
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999887653
No 246
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=127.75 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCe-eEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV-RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v-~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
...+.++|||+|||+++++++|+++| +.||.| ..|+|++|+ +|+++|||||+|.+.++|++|++. |+..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFL-EGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHT-TTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHH-HhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 34567899999999999999999999 899999 899999998 899999999999999999999996 99999999999
Q ss_pred EecccCCC
Q 014513 191 ISAATPKK 198 (423)
Q Consensus 191 v~~a~~~~ 198 (423)
|.++.++.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 247
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=125.40 Aligned_cols=85 Identities=18% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee------
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC------ 184 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~------ 184 (423)
....+.++|||+|||+++++++|+++| +.||.|..++|+.++ +++++|||||+|.+.++|++|++.|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENML-KPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTT-TTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 344567899999999999999999999 899999999999998 899999999999999999999999999999
Q ss_pred --cCcceEEecccCC
Q 014513 185 --STRPMRISAATPK 197 (423)
Q Consensus 185 --~g~~i~v~~a~~~ 197 (423)
.+++|.|.++.++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999988764
No 248
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.1e-16 Score=128.79 Aligned_cols=78 Identities=26% Similarity=0.499 Sum_probs=72.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCCC
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 310 (423)
...++|||+|| ++|+++|+++|++||.|.+|.+..++|||||+|.+.++|++|++.|||..|+|+.|+|.|++++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 45799999996 6999999999999999999999999999999999999999999999999999999999999976443
No 249
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=125.36 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=74.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
......+|||+|||+++++++|+++| +.| .|.+|+|+.|+. |+++|||||+|.+.++|++|+ .+|+..+.||.|.|
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F-~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFF-HGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEV 87 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHT-TTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHh-ccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 34446789999999999999999999 899 899999999976 999999999999999999999 59999999999999
Q ss_pred ecccCC
Q 014513 192 SAATPK 197 (423)
Q Consensus 192 ~~a~~~ 197 (423)
..+.++
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 888653
No 250
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=120.71 Aligned_cols=77 Identities=19% Similarity=0.412 Sum_probs=68.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCc-EEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g-~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
..++|||+|||.++|+++|+++|++||.|.+|.+.+..+ ||||+|.+.++|++|+. |||..|+|+.|+|.++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 458999999999999999999999999999984443222 99999999999999999 999999999999998875543
No 251
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-17 Score=126.64 Aligned_cols=84 Identities=26% Similarity=0.476 Sum_probs=75.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCC-CCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDP-NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~-~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
.....++|||+|||+++++++|+++| +.|| |.+++|++++ .+|+++|||||+|.+.++|.+|+ .++|..+.|+.|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHS-CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 44567899999999999999999999 8999 9999999998 68999999999999999999999 8999999999999
Q ss_pred EecccCCC
Q 014513 191 ISAATPKK 198 (423)
Q Consensus 191 v~~a~~~~ 198 (423)
|.++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99987653
No 252
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.2e-16 Score=127.50 Aligned_cols=75 Identities=16% Similarity=0.355 Sum_probs=67.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceE-----EEEEEccc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQ-----VRISWGRK 306 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~-----l~v~~a~~ 306 (423)
..++|||+|||.++|+++|+++|++||.|.+|.|..+ |||||+|.+.++|++||+.|||..|+|+. |+|..+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4689999999999999999999999999999999987 99999999999999999999999999998 77777665
Q ss_pred C
Q 014513 307 Q 307 (423)
Q Consensus 307 ~ 307 (423)
+
T Consensus 94 ~ 94 (115)
T 3beg_B 94 R 94 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 253
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.7e-17 Score=125.38 Aligned_cols=81 Identities=32% Similarity=0.573 Sum_probs=74.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 117 ~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
++|||+|||+++++++|+++| +.||.|.++++++++.+|+++|||||+|.+.+ |.+|+..|||..+.|++|+|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELF-SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTH-HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHH-HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 579999999999999999999 89999999999999999999999999999999 9999999999999999999999987
Q ss_pred CCc
Q 014513 197 KKT 199 (423)
Q Consensus 197 ~~~ 199 (423)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 254
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.2e-16 Score=122.98 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc---
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE--- 94 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~--- 94 (423)
......++|||+|||+++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++|++.|||..|.+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34567899999999999999999999999999999999876 89999999999999999999999998822
Q ss_pred ceEeeecccc
Q 014513 95 QNFRLNWASF 104 (423)
Q Consensus 95 ~~v~~~~a~~ 104 (423)
..+++.++..
T Consensus 83 ~~i~V~~a~~ 92 (108)
T 1x4c_A 83 AYIRVKVDGP 92 (108)
T ss_dssp EEEEEEESSC
T ss_pred eEEEEEeCCC
Confidence 4455555543
No 255
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=130.08 Aligned_cols=84 Identities=18% Similarity=0.316 Sum_probs=75.7
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC----C
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVS--IKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT----P 89 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~--v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~----~ 89 (423)
.+......++|||+|||+++++++|+++|++||.|.. |+|++++.+|.++|||||+|.+. +|.+|++.|||. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3455577899999999999999999999999999977 99999999999999999999999 999999999999 8
Q ss_pred CCCccceEeee
Q 014513 90 MPGTEQNFRLN 100 (423)
Q Consensus 90 ~~~~~~~v~~~ 100 (423)
+.|+.+.|...
T Consensus 95 ~~gr~l~V~~a 105 (131)
T 2m2b_A 95 IDGKTINVEFA 105 (131)
T ss_dssp GGGCCCCCEEC
T ss_pred CCCEEEEEEEC
Confidence 88876666543
No 256
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=124.61 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=76.8
Q ss_pred CCCCCceEEEeCCCCCC------CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec
Q 014513 112 DAGPEHSIFVGDLAPDV------TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~------t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
.....++|||+|||+.+ ++++|+++| +.||.|.+|.|+ +.+|+++|||||+|.+.++|.+|+..|||..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHH-GGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHH-hcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 44457899999999999 789999999 999999999998 467999999999999999999999999999999
Q ss_pred Cc-ceEEecccCCC
Q 014513 186 TR-PMRISAATPKK 198 (423)
Q Consensus 186 g~-~i~v~~a~~~~ 198 (423)
|+ +|+|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 99 99999987654
No 257
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=4.7e-16 Score=125.08 Aligned_cols=79 Identities=27% Similarity=0.354 Sum_probs=71.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC-CCcE-EEEEeCChHHHHHHHHHhCCeEeCc--eEEEEEEcccC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-GRGC-GFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQ 307 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~-~~g~-aFV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~a~~~ 307 (423)
....|||+||++.+|+++|+++|++||.|.+|.+.. .+|+ |||+|.+.++|++|++.|||..|.| ++|+|.|++++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 456788999999999999999999999999998865 4677 9999999999999999999999977 99999999976
Q ss_pred CCC
Q 014513 308 DVT 310 (423)
Q Consensus 308 ~~~ 310 (423)
...
T Consensus 107 ~l~ 109 (130)
T 3zzy_A 107 SLN 109 (130)
T ss_dssp SCC
T ss_pred cee
Confidence 443
No 258
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=134.03 Aligned_cols=78 Identities=23% Similarity=0.509 Sum_probs=72.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTG--EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
+.++|||+|||+++++++|+++|++|| .|.+|+|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.+.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999997666554
No 259
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=124.87 Aligned_cols=87 Identities=21% Similarity=0.427 Sum_probs=79.0
Q ss_pred CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 108 ~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
.........++|||+|||.++++++|+++| +.||.|..++++.++ ++++|||||+|.+.++|++|++.|+|..+.|+
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMF-GQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHG-GGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHH-HhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344455678899999999999999999999 999999999999985 45999999999999999999999999999999
Q ss_pred ceEEecccCC
Q 014513 188 PMRISAATPK 197 (423)
Q Consensus 188 ~i~v~~a~~~ 197 (423)
+|+|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998775
No 260
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=122.01 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC--CC
Q 014513 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP--MP 91 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~--~~ 91 (423)
+.+.....++++|||+|||+++++++|+++|++||.|.+|++++. +|||||+|.+.++|.+|++.|++.. +.
T Consensus 12 ~~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 12 YDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp -----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred ccccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 455566778999999999999999999999999999999999864 5999999999999999999999987 55
Q ss_pred CccceEeeeccc
Q 014513 92 GTEQNFRLNWAS 103 (423)
Q Consensus 92 ~~~~~v~~~~a~ 103 (423)
|+ ++.+.++.
T Consensus 86 Gr--~i~V~~S~ 95 (100)
T 3r27_A 86 GH--PAFVNYST 95 (100)
T ss_dssp TE--EEEEEECS
T ss_pred Cc--EEEEEecc
Confidence 64 55566554
No 261
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=120.71 Aligned_cols=78 Identities=12% Similarity=0.282 Sum_probs=71.2
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEE-EeCC--CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK-IPMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~-i~~~--~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
...++|||+|||.++|+++|+++|++||.|.+++ ++.+ .+.|||+|.+.++|++|+..|||..|+|++|+|.+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3468999999999999999999999999999994 7765 356999999999999999999999999999999999876
Q ss_pred C
Q 014513 308 D 308 (423)
Q Consensus 308 ~ 308 (423)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 262
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=129.95 Aligned_cols=84 Identities=25% Similarity=0.432 Sum_probs=78.3
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..++|++++.+++++|||||+|.+.++|++|++.||+..+.|++|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHH-GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445578899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 014513 190 RISAA 194 (423)
Q Consensus 190 ~v~~a 194 (423)
+|.+|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 263
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=127.39 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.7
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
...+.++|||+|||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|.++.+.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 4556789999999999999999999999999999999999988999999999999999999999 999999999665554
Q ss_pred e
Q 014513 99 L 99 (423)
Q Consensus 99 ~ 99 (423)
.
T Consensus 100 ~ 100 (114)
T 2cq4_A 100 A 100 (114)
T ss_dssp E
T ss_pred e
Confidence 4
No 264
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=2.6e-16 Score=119.04 Aligned_cols=70 Identities=23% Similarity=0.464 Sum_probs=67.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhc----C-------CeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEE
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHF----G-------EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~----G-------~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~ 300 (423)
..++|||+|||.++|+++|+++|++| | .|.++.+.+++|||||+|.+.++|++|+ .|||..|+|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 46899999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EE
Q 014513 301 IS 302 (423)
Q Consensus 301 v~ 302 (423)
|+
T Consensus 84 V~ 85 (87)
T 2hzc_A 84 IR 85 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 97
No 265
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=6.8e-16 Score=125.00 Aligned_cols=83 Identities=19% Similarity=0.374 Sum_probs=75.4
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...++.++|||+|||+++++++|+++|++||.|.+|+|++++ +|.++|||||+|.+.++|.+|++.|||..+.++.+.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~- 107 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD- 107 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE-
Confidence 456788999999999999999999999999999999999998 999999999999999999999999999999986554
Q ss_pred eeeccc
Q 014513 98 RLNWAS 103 (423)
Q Consensus 98 ~~~~a~ 103 (423)
+.++.
T Consensus 108 -V~~a~ 112 (124)
T 2kt5_A 108 -IQLVA 112 (124)
T ss_dssp -EEEEC
T ss_pred -EEEeC
Confidence 45543
No 266
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-16 Score=120.37 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=75.2
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh--CCceecC
Q 014513 109 KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM--NGVFCST 186 (423)
Q Consensus 109 ~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~--~g~~~~g 186 (423)
.+....++++|||+|||+++++++|+++| +.||.|.+|.|+++ ||||||+|.+.++|.+|++.+ ++..+.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F-~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALG-LPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTT-TTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34555678899999999999999999999 99999999998864 789999999999999999976 5678999
Q ss_pred cceEEecccCCCcc
Q 014513 187 RPMRISAATPKKTT 200 (423)
Q Consensus 187 ~~i~v~~a~~~~~~ 200 (423)
++|.|.++.++...
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 99999999876543
No 267
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=1.2e-16 Score=117.26 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
+|||+|||+++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|++|++ +++..+.|+.+.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEE
Confidence 59999999999999999999999999999999999899999999999999999999996 99999999776654
No 268
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=4.1e-16 Score=130.22 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=70.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC--CCcEEEEEeCChHHHHHHHHHhCCeEeCc--eEEEEEEcccC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQ 307 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~--~~g~aFV~F~~~~~A~~Al~~l~g~~i~g--~~l~v~~a~~~ 307 (423)
...+|||+||++.+|+++|+++|++||.|++|.|.. .+|||||+|.+.++|++|++.|||..|.| ++|+|.|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 357799999999999999999999999999999964 36899999999999999999999999955 99999999976
Q ss_pred C
Q 014513 308 D 308 (423)
Q Consensus 308 ~ 308 (423)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 269
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=117.60 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=65.5
Q ss_pred cceEEEecCCCCCCHHH----HHHHhhhc-CCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 233 NTTIFVGNLDPNVTEEE----LKQTFLHF-GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~----L~~~F~~~-G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
.+.|||+|||+.+++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|||+.+.||+|+|++|+.+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 34599999999999988 55899999 5999983 499999999999999999999999999999999999965
Q ss_pred CC
Q 014513 308 DV 309 (423)
Q Consensus 308 ~~ 309 (423)
..
T Consensus 85 sd 86 (96)
T 2diu_A 85 RE 86 (96)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 270
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=127.17 Aligned_cols=82 Identities=26% Similarity=0.409 Sum_probs=77.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++|||+|||+++++++|+++| +.||.|..|+|+.++.+++++|||||+|.+.++|++|+ .||+..+.|+.|+|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFF-SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45789999999999999999999 99999999999999999999999999999999999999 89999999999999998
Q ss_pred cCCC
Q 014513 195 TPKK 198 (423)
Q Consensus 195 ~~~~ 198 (423)
.++.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7643
No 271
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.9e-16 Score=118.89 Aligned_cols=80 Identities=20% Similarity=0.439 Sum_probs=68.4
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
....+.++|||+|||+++++++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|||..+.+....+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 44567789999999999999999999999999999998764 689999999999999999999999999222445
Q ss_pred eeeccc
Q 014513 98 RLNWAS 103 (423)
Q Consensus 98 ~~~~a~ 103 (423)
++.|+.
T Consensus 86 ~V~~a~ 91 (97)
T 1why_A 86 RVDFAK 91 (97)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 555554
No 272
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=127.33 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=72.5
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEV-VSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v-~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
..+.+.++|||+|||+++++++|+++|+.||.| .+|+|+.++ +|.++|||||+|.+.++|++||+. |+..|.++.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345678999999999999999999999999999 899999998 999999999999999999999976 99999996655
Q ss_pred Eee
Q 014513 97 FRL 99 (423)
Q Consensus 97 v~~ 99 (423)
|..
T Consensus 88 v~~ 90 (114)
T 2cpy_A 88 VHV 90 (114)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 273
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=124.06 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=75.6
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCC--ceecC
Q 014513 109 KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG--VFCST 186 (423)
Q Consensus 109 ~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g--~~~~g 186 (423)
.+....++++|||+|||+++++++|+++| +.||.|.+|+|+++ ||||||+|.+.++|.+|++.+++ ..+.|
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF-~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLG-LPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHH-TTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455678899999999999999999999 99999999999875 78999999999999999998874 67999
Q ss_pred cceEEecccCCCcc
Q 014513 187 RPMRISAATPKKTT 200 (423)
Q Consensus 187 ~~i~v~~a~~~~~~ 200 (423)
++|+|.++.++...
T Consensus 97 r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 QPIYIQFSNHKELK 110 (119)
T ss_dssp BCCEEEECSSSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999999876554
No 274
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.3e-16 Score=130.54 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=77.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCC---eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS---VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~---v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
+.....++|||+|||+++|+++|+++| +.||. |.+|+|++|+. |+++|||||+|.+.++|++|++ +|+..+.||
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F-~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFL-SDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHT-TTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 344567899999999999999999999 89999 89999999987 9999999999999999999999 999999999
Q ss_pred ceEEecccCC
Q 014513 188 PMRISAATPK 197 (423)
Q Consensus 188 ~i~v~~a~~~ 197 (423)
.|+|.++.++
T Consensus 116 ~i~V~~a~~~ 125 (136)
T 2hgl_A 116 YIEVFKSHRT 125 (136)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEECChH
Confidence 9999988653
No 275
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=122.50 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCcCCccEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC--CCCcc
Q 014513 18 MTLEEVRTLWIGDLQY-WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP--MPGTE 94 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~-~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~--~~~~~ 94 (423)
...+++++|||+|||+ ++++++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.|++.. |.|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3456789999999999 9999999999999999999999875 4899999999999999999998755 77755
Q ss_pred ceEeeeccc
Q 014513 95 QNFRLNWAS 103 (423)
Q Consensus 95 ~~v~~~~a~ 103 (423)
+.+.++.
T Consensus 84 --l~V~~a~ 90 (102)
T 1x4d_A 84 --VRVHLSQ 90 (102)
T ss_dssp --CEEEEEC
T ss_pred --EEEEECC
Confidence 4555554
No 276
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=118.72 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=66.6
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc-cc
Q 014513 23 VRTLWIGDLQYWF------DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-EQ 95 (423)
Q Consensus 23 ~r~l~V~nLp~~~------~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~-~~ 95 (423)
+++|||+|||+.+ ++++|+++|++||.|.+|++++ .+|.++|||||+|.+.++|.+|++.|||..+.|+ .+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 7799999999999999999883 4899999999999999999999999999999997 55
Q ss_pred eE
Q 014513 96 NF 97 (423)
Q Consensus 96 ~v 97 (423)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 44
No 277
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=126.12 Aligned_cols=85 Identities=15% Similarity=0.301 Sum_probs=75.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~----~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g 186 (423)
....+.++|||+|||+.+++++|+ ++| +.||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..+.|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F-~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALA-SSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHh-ccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 344567899999999999999876 689 9999999988754 58899999999999999999999999999999
Q ss_pred cceEEecccCCCc
Q 014513 187 RPMRISAATPKKT 199 (423)
Q Consensus 187 ~~i~v~~a~~~~~ 199 (423)
++|+|.++..+..
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999987654
No 278
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=117.96 Aligned_cols=75 Identities=24% Similarity=0.489 Sum_probs=69.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.++ ..+.|+.+.++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 579999999999999999999999999999999999899999999999999999999999988 889997766653
No 279
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=118.85 Aligned_cols=74 Identities=16% Similarity=0.349 Sum_probs=68.3
Q ss_pred CceEEEeCCCCCC------CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc-c
Q 014513 116 EHSIFVGDLAPDV------TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR-P 188 (423)
Q Consensus 116 ~~~l~vgnLp~~~------t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~-~ 188 (423)
+++|||+|||..+ ++++|+++| +.||.|.+++++ +.+|+++|||||+|.+.++|.+|++.|||..+.|+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHH-HTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHH-hhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 779999999 899999999987 46799999999999999999999999999999999 8
Q ss_pred eEEe
Q 014513 189 MRIS 192 (423)
Q Consensus 189 i~v~ 192 (423)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8763
No 280
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=123.32 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=69.4
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC-CCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNK-ITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~-~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~ 93 (423)
..+......++|||+|||+++++++|+++|++|| |.+|+|++++ .+|.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3345677889999999999999999999999999 9999999998 68999999999999999999999 8999999997
Q ss_pred cceEee
Q 014513 94 EQNFRL 99 (423)
Q Consensus 94 ~~~v~~ 99 (423)
.+.|..
T Consensus 89 ~l~V~~ 94 (100)
T 2j76_E 89 RIRVDV 94 (100)
T ss_dssp CCCCEE
T ss_pred EEEEEe
Confidence 665544
No 281
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=121.10 Aligned_cols=87 Identities=32% Similarity=0.491 Sum_probs=78.8
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.| ..++++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESF-DGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTS-TTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHh-cCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4455678999999999999999999999 765 478899999899999999999999999999999999999999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
+|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999887654
No 282
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=120.76 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=76.9
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.| +++.+ .+++++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVF-EKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHC-SSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 3355678999999999999999999999 899976 56666 679999999999999999999999999999999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
+|.++.++...
T Consensus 84 ~v~~a~~~~~~ 94 (101)
T 2fc9_A 84 RLELQGPRGSP 94 (101)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEcCCCCCC
Confidence 99999887543
No 283
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.7e-16 Score=127.23 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE---VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
....+.++|||+|||+++++++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +|+..|.++.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 44567899999999999999999999999999 89999999985 9999999999999999999998 9999999976
Q ss_pred ceEee
Q 014513 95 QNFRL 99 (423)
Q Consensus 95 ~~v~~ 99 (423)
+.|..
T Consensus 90 i~V~~ 94 (118)
T 2db1_A 90 IEVFK 94 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 284
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=121.60 Aligned_cols=74 Identities=27% Similarity=0.489 Sum_probs=69.7
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
....+.++|||+|||+++++++|+++|++||.|.+|+|++++ ++.++|||||+|.+.++|.+|++.|||..+.+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 445678999999999999999999999999999999999998 99999999999999999999999999999954
No 285
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=128.47 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=72.5
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
....+.++|||+|||+++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|.+||+ ||+..|.++.+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345677899999999999999999999999999987777777799999999999999999999998 9999999976665
Q ss_pred ee
Q 014513 98 RL 99 (423)
Q Consensus 98 ~~ 99 (423)
..
T Consensus 99 ~~ 100 (124)
T 1wel_A 99 HP 100 (124)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=3.4e-16 Score=126.80 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=78.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++|||+|||.++++++|+++| +.||.|.+|+++.++.+++++|||||+|.+.++|++|+ .+||..+.|+.|+|.++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHF-SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHH-HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 45789999999999999999999 89999999999999999999999999999999999999 79999999999999998
Q ss_pred cCCCc
Q 014513 195 TPKKT 199 (423)
Q Consensus 195 ~~~~~ 199 (423)
.+...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 76543
No 287
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=118.19 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...+..++|||+|||+++++++|+++|++||.|. ++++.. .++|||||+|.+.++|++|++.|||..|.++.+.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4566789999999999999999999999999997 666654 47899999999999999999999999999976655
Q ss_pred ee
Q 014513 98 RL 99 (423)
Q Consensus 98 ~~ 99 (423)
..
T Consensus 89 ~~ 90 (97)
T 2e5j_A 89 AL 90 (97)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 288
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.9e-17 Score=130.87 Aligned_cols=86 Identities=16% Similarity=0.297 Sum_probs=78.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
.....++|||+|||+++++++|+++| +.||.|.++.++.+..+|+++|||||+|.+.++|++|+. +|+..+.|+.|.|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFF-KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHS-CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34456899999999999999999999 999999997777777899999999999999999999999 9999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (124)
T 1wel_A 99 HPITKKGM 106 (124)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99876543
No 289
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=6e-16 Score=117.36 Aligned_cols=75 Identities=35% Similarity=0.507 Sum_probs=63.1
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeC-CCcEEEEEeCChHHHHHHHHHhCCeE--eCceEEEEEEccc
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-GRGCGFVQFAARASAEEAILRMQGHM--IGQQQVRISWGRK 306 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~-~~g~aFV~F~~~~~A~~Al~~l~g~~--i~g~~l~v~~a~~ 306 (423)
..+.++|||+|||.++|+++|+++|++||.|.+|.|+. +||||||+|.+.++|++ +++.. ++|+.|+|.+|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 35579999999999999999999999999999999987 48999999999999984 45554 6799999999986
Q ss_pred CC
Q 014513 307 QD 308 (423)
Q Consensus 307 ~~ 308 (423)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 290
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=6e-16 Score=120.52 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=69.0
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEE-----EEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN-----VKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~-----v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
....++|||+|||.++|+++|+++|++||.|.. .....++|||||+|.+.++|++|++ |||..|+|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 345789999999999999999999999997655 2233468999999999999999998 9999999999999999
Q ss_pred ccCCC
Q 014513 305 RKQDV 309 (423)
Q Consensus 305 ~~~~~ 309 (423)
+++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 291
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=3.1e-16 Score=125.70 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=77.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCC---eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcc
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS---VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~---v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~ 188 (423)
.....++|||+|||+++|+++|+++| +.||. |..|+|++++. |+++|||||+|.+.++|++|++ +|+..+.|+.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFL-SDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHT-TTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34457889999999999999999999 89999 89999999987 9999999999999999999999 9999999999
Q ss_pred eEEecccCC
Q 014513 189 MRISAATPK 197 (423)
Q Consensus 189 i~v~~a~~~ 197 (423)
|+|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999988654
No 292
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=1.3e-16 Score=117.04 Aligned_cols=75 Identities=25% Similarity=0.448 Sum_probs=71.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 118 ~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
+|||+|||+++++++|+++| +.||.|.++.+++++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999 899999999999999999999999999999999999999 5899999999998764
No 293
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.2e-16 Score=131.14 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=75.2
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeeeccccCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCee
Q 014513 66 GYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145 (423)
Q Consensus 66 g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~ 145 (423)
++||.+|.-++.+..++..+... ..+... - ...............++|||+|||+++|+++|+++| +.|| |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~--g---~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F-~~~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQM--G---RGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF-SPLN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH-CSCC-CS
T ss_pred CcccccccCccccchhcccchhc-cCCCCC--C---CCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC-Ce
Confidence 56777777777666655432211 111110 0 000111112234456889999999999999999999 8999 77
Q ss_pred EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 146 ~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
+|+|++|+. |+++|||||+|.+.++|++|+ ++|+..+.+|.|+|..+.++..
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 999999986 999999999999999999999 6999999999999998877544
No 294
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=4.1e-16 Score=125.57 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCee--EEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV--SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~--~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~ 93 (423)
.+......++|||+|||+++++++|+++|+.| .|+ +|+|+.++. |+++|||||+|.++++|++||+ +++..|.++
T Consensus 35 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR 111 (126)
T 2hgm_A 35 NSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHR 111 (126)
T ss_dssp CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCE
Confidence 34456678899999999999999999999999 666 999999985 9999999999999999999997 578999997
Q ss_pred cceEee
Q 014513 94 EQNFRL 99 (423)
Q Consensus 94 ~~~v~~ 99 (423)
.+.|..
T Consensus 112 ~I~V~~ 117 (126)
T 2hgm_A 112 YIEVFK 117 (126)
T ss_dssp CCCCEE
T ss_pred EEEEEE
Confidence 766544
No 295
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-16 Score=124.73 Aligned_cols=85 Identities=19% Similarity=0.392 Sum_probs=78.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..+.++|||+|||+++++++|+++| +.||.|.. .++.++.+++++|||||+|.+.++|++|++ ||+..+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3457899999999999999999999 89999998 778888889999999999999999999999 99999999999999
Q ss_pred cccCCCcc
Q 014513 193 AATPKKTT 200 (423)
Q Consensus 193 ~a~~~~~~ 200 (423)
++.++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99876543
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.2e-16 Score=131.11 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=69.2
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
.+......++|||+|||+++++++|+++|++|| +++|+|+.++. |+++|||||+|.+.++|++|| .+|+..|.++.+
T Consensus 39 ~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 39 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp ------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 344567788999999999999999999999999 66999999984 999999999999999999999 789999999866
Q ss_pred eEee
Q 014513 96 NFRL 99 (423)
Q Consensus 96 ~v~~ 99 (423)
.|..
T Consensus 116 ~V~~ 119 (139)
T 2hgn_A 116 ELFL 119 (139)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 5544
No 297
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-17 Score=133.31 Aligned_cols=79 Identities=28% Similarity=0.405 Sum_probs=72.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEE--------EEEeCC------CcEEEEEeCChHHHHHHHHHhCCeEeCc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN--------VKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQ 296 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~--------v~i~~~------~g~aFV~F~~~~~A~~Al~~l~g~~i~g 296 (423)
.+.++|||+|||.++|+++|+++|++||.|.. |.+..+ +|||||+|.+.++|++|+..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 777654 6899999999999999999999999999
Q ss_pred eEEEEEEcccCCC
Q 014513 297 QQVRISWGRKQDV 309 (423)
Q Consensus 297 ~~l~v~~a~~~~~ 309 (423)
+.|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999986643
No 298
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.6e-16 Score=121.09 Aligned_cols=76 Identities=24% Similarity=0.509 Sum_probs=71.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEeee
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~~ 100 (423)
++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.+ |.+|++.|||..+.|+.+.|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 68999999999999999999999999999999999989999999999999999 99999999999999976666553
No 299
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=118.27 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=70.0
Q ss_pred CCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 15 ~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
..+....+.++|||+|||+++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 33455678899999999999999999999999999999999864 599999999999999999999999999966
Q ss_pred ceEee
Q 014513 95 QNFRL 99 (423)
Q Consensus 95 ~~v~~ 99 (423)
+.|..
T Consensus 81 l~v~~ 85 (99)
T 2cpj_A 81 LRVRF 85 (99)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 55544
No 300
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=118.17 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=65.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccCCC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~~~ 309 (423)
..++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|+.. ...++|++|+|.+++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 4699999999999999999999999999999999875 89999999999999864322 2446999999999986644
No 301
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.6e-16 Score=122.62 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=72.6
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCC----HHH----HHHHHH--hhCCc
Q 014513 117 HSIFVGDL----APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLD----ENE----RNRAMT--EMNGV 182 (423)
Q Consensus 117 ~~l~vgnL----p~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~----~~~----a~~a~~--~~~g~ 182 (423)
..|||+|| |+.+++..|+++| +.||+|.+++++.|+.||+|+|||||+|.+ +++ |.+|+. .++|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 9999999999999 899999999999999999999999999996 333 889988 78999
Q ss_pred eecCcceEEecccCCC
Q 014513 183 FCSTRPMRISAATPKK 198 (423)
Q Consensus 183 ~~~g~~i~v~~a~~~~ 198 (423)
.+.|++|+|.......
T Consensus 82 ~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSI 97 (136)
T ss_dssp EETTEEEEEEECCTTH
T ss_pred eecCcEEEEEECcccH
Confidence 9999999998765543
No 302
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=3.1e-16 Score=140.61 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g--~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..++|||+||++++|+++|+++| +.|| .|.+|+|++|+.|+++||||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F-~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHH-HTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 56789999999999999999999 8999 99999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 014513 193 AATPK 197 (423)
Q Consensus 193 ~a~~~ 197 (423)
++.+.
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98654
No 303
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=2.8e-16 Score=122.71 Aligned_cols=78 Identities=23% Similarity=0.455 Sum_probs=71.1
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
....++|||+|||.++|+++|+++|++||.|.++.++.+ +|||||+|.+.++|++|+. ++..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345699999999999999999999999999999999873 6999999999999999999 999999999999999
Q ss_pred ccCCC
Q 014513 305 RKQDV 309 (423)
Q Consensus 305 ~~~~~ 309 (423)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 86544
No 304
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=124.12 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=77.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCC---eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcc
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS---VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~---v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~ 188 (423)
.....++|||+|||+++|+++|+++| +.||. |.+|+|++++. |+++|||||+|.+.++|++|+. +++..+.|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFF-SDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHT-TTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHH-HhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 44567889999999999999999999 89888 89999999987 9999999999999999999999 9999999999
Q ss_pred eEEecccCC
Q 014513 189 MRISAATPK 197 (423)
Q Consensus 189 i~v~~a~~~ 197 (423)
|+|.++.++
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988754
No 305
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=114.55 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=73.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..++++ +|||||+|.+.++|++|++.+|+..+.|++|+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLF-EQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHH-HTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 34567899999999999999999999 899999999997 679999999999999999999999999999999
Q ss_pred ecccCCCcc
Q 014513 192 SAATPKKTT 200 (423)
Q Consensus 192 ~~a~~~~~~ 200 (423)
.++.++...
T Consensus 75 ~~a~~~~~~ 83 (90)
T 2dnq_A 75 EASKNKSKA 83 (90)
T ss_dssp ECSSCCCCC
T ss_pred EECCCCCCC
Confidence 999876653
No 306
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=125.29 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=76.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..+.+..+..+++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLF-ARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHT-HHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34467899999999999999999999 89999955444444347999999999999999999999999999999999999
Q ss_pred ecccCCCcc
Q 014513 192 SAATPKKTT 200 (423)
Q Consensus 192 ~~a~~~~~~ 200 (423)
.++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999887654
No 307
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=3.1e-16 Score=115.04 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=69.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 25 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
+|||+|||+++++++|+++|++||+|.+|++++++.++.++|||||+|.+.++|.+|++ +++..+.|+.+.++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEE
Confidence 59999999999999999999999999999999999899999999999999999999996 589999998777654
No 308
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8e-16 Score=120.96 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=70.0
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
...+.++|||+|||+++++++|+++|+.| .|.+|+|+.++ +|+++|||||+|.++++|.+|| .+|+..|.++.+.|.
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 34567899999999999999999999999 89999999998 5999999999999999999999 689999999765554
Q ss_pred e
Q 014513 99 L 99 (423)
Q Consensus 99 ~ 99 (423)
.
T Consensus 89 ~ 89 (109)
T 2dnn_A 89 P 89 (109)
T ss_dssp E
T ss_pred E
Confidence 3
No 309
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=1e-15 Score=120.64 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=71.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCC-CeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g-~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
..++|||+|||+++++++|+++| +.|| .|..+.|.. ++++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F-~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLA-RENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHH-HHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 46789999999999999999999 8999 899998864 35899999999999999999999999999999999999
Q ss_pred ccCC
Q 014513 194 ATPK 197 (423)
Q Consensus 194 a~~~ 197 (423)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 310
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-15 Score=118.25 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
...++|||+|||.++++++|+++| +.||.|.+++++ +++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLF-QNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHH-HTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHH-HhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 346889999999999999999999 899999999997 4689999999999999999999999999999999999
Q ss_pred ccCC
Q 014513 194 ATPK 197 (423)
Q Consensus 194 a~~~ 197 (423)
+.++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 311
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=6.1e-16 Score=119.54 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=76.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~----~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
+..+.++|||+|||+++++++|+ ++| +.||.|..++++. +|+++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f-~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHH-GGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 45568899999999999999999 999 9999999999874 478899999999999999999999999999999
Q ss_pred ceEEecccCCCc
Q 014513 188 PMRISAATPKKT 199 (423)
Q Consensus 188 ~i~v~~a~~~~~ 199 (423)
+|+|.++.++..
T Consensus 80 ~l~v~~a~~~~~ 91 (97)
T 1nu4_A 80 PMRIQYAKTDSD 91 (97)
T ss_dssp ECEEEECSSCCT
T ss_pred EEEEEEccCCCc
Confidence 999999987654
No 312
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=119.14 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=65.8
Q ss_pred CCcCCccEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCC--CCCCCcc
Q 014513 18 MTLEEVRTLWIGDLQYW-FDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG--TPMPGTE 94 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~-~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g--~~~~~~~ 94 (423)
....++++|||+|||++ +++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|+.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 35778999999999998 999999999999999999999753 69999999999999999998865 4578865
Q ss_pred ceEee
Q 014513 95 QNFRL 99 (423)
Q Consensus 95 ~~v~~ 99 (423)
+.|..
T Consensus 94 l~V~~ 98 (112)
T 1x4f_A 94 VKVDL 98 (112)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 55544
No 313
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=112.87 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhh-CCceecCcc
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM-NGVFCSTRP 188 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~-~g~~~~g~~ 188 (423)
.+...+.++|||+|||+++++++|+++| +.||.|..++++++ +|||||+|.+.++|.+|++.| ++..+.|++
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f-~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHF-YQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHH-HTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHH-HhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3455667899999999999999999999 89999999999864 789999999999999999998 999999999
Q ss_pred eEEecc
Q 014513 189 MRISAA 194 (423)
Q Consensus 189 i~v~~a 194 (423)
|+|.++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999886
No 314
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=5e-16 Score=125.04 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=73.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCee--EEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR--GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~--~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....++|||+|||+++|+++|+++| +.| .|. +|+|++|+. |+++|||||+|.++++|++|++ +++..+.||.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F-~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFF-SGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHT-TTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-hcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 44567889999999999999999999 899 677 999999987 9999999999999999999998 47799999999
Q ss_pred EEecccC
Q 014513 190 RISAATP 196 (423)
Q Consensus 190 ~v~~a~~ 196 (423)
+|..+.+
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 315
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=4.9e-16 Score=138.63 Aligned_cols=79 Identities=25% Similarity=0.516 Sum_probs=72.6
Q ss_pred CCCcceEEEecCCCCC---------CHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEe------
Q 014513 230 DITNTTIFVGNLDPNV---------TEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI------ 294 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~---------te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i------ 294 (423)
....++|||+||+..+ ++++|+++|++||.|++|.|..+||||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 3457999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CceEEEEEEcccCC
Q 014513 295 ------GQQQVRISWGRKQD 308 (423)
Q Consensus 295 ------~g~~l~v~~a~~~~ 308 (423)
+|+.|.|.||+..+
T Consensus 211 e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TGGGGGGSCCCEEEECC---
T ss_pred cccccCCCCEEEEEEccCCC
Confidence 89999999999654
No 316
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=2.9e-15 Score=125.09 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=73.0
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
.+....+|||+||++.+++++|+++|++||.|.+|+|+..+ ++|||||+|.+.++|++|++.|||..|.+...+++
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 35567789999999999999999999999999999987543 57899999999999999999999999987556777
Q ss_pred eeccccCC
Q 014513 99 LNWASFGI 106 (423)
Q Consensus 99 ~~~a~~~~ 106 (423)
+.|+....
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 77876543
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=8.4e-16 Score=127.75 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=69.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEE--------EEEe---CCCcEEEEEeCChHHHHHHHHHhCCeEeCceEE
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN--------VKIP---MGRGCGFVQFAARASAEEAILRMQGHMIGQQQV 299 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~--------v~i~---~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l 299 (423)
.++++|||+|||..+|+++|+++|++||.|.. +.+. .++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45689999999999999999999999998865 3333 368999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 014513 300 RISWGRKQD 308 (423)
Q Consensus 300 ~v~~a~~~~ 308 (423)
+|.+|++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998643
No 318
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=113.34 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=74.5
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 110 ~~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
.....+.++|||+|||+++++++|+++| +.||.|..+++++ +||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKF-EEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHH-HTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 3455678999999999999999999999 8999999999974 399999999999999999999999999999
Q ss_pred EEecccCCCcc
Q 014513 190 RISAATPKKTT 200 (423)
Q Consensus 190 ~v~~a~~~~~~ 200 (423)
+|.++.++...
T Consensus 75 ~V~~a~~~~~~ 85 (92)
T 2dgt_A 75 HVQLSTSRLRT 85 (92)
T ss_dssp EEEESSCCCSC
T ss_pred EEEEccCCCCC
Confidence 99999876553
No 319
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-16 Score=121.23 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=72.5
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE---VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
....+.++|||+|||+++++++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +|+..|.++.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 45568899999999999999999999999988 89999999985 9999999999999999999998 9999999976
Q ss_pred ceEee
Q 014513 95 QNFRL 99 (423)
Q Consensus 95 ~~v~~ 99 (423)
+.|..
T Consensus 84 i~V~~ 88 (107)
T 2lmi_A 84 VEVYE 88 (107)
T ss_dssp CCCEE
T ss_pred EEEEE
Confidence 65543
No 320
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.1e-16 Score=124.28 Aligned_cols=81 Identities=22% Similarity=0.234 Sum_probs=73.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCe----eEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSV----RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v----~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
....+|||+|||+++|+++|+++| +.||.| .+|+|++++ +|+++|||||+|.+.++|++|++. |++.+.+|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F-~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFF-GQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHH-HTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 346789999999999999999999 899875 699999994 899999999999999999999995 9999999999
Q ss_pred EEecccCC
Q 014513 190 RISAATPK 197 (423)
Q Consensus 190 ~v~~a~~~ 197 (423)
+|..+.++
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99887654
No 321
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.7e-15 Score=119.39 Aligned_cols=88 Identities=20% Similarity=0.363 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHc
Q 014513 6 PQGGGYHQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85 (423)
Q Consensus 6 ~~~~g~~~~~~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l 85 (423)
+..........+....+.++|||+|||+++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.|
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l 85 (108)
T 2jvo_A 14 LVPRGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEV 85 (108)
T ss_dssp --------------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHH
T ss_pred CcCCCCCcccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHc
Confidence 333444445555667788999999999999999999999999999999997 599999999999999999999
Q ss_pred CCCCCCCccceEeeeccc
Q 014513 86 NGTPMPGTEQNFRLNWAS 103 (423)
Q Consensus 86 ~g~~~~~~~~~v~~~~a~ 103 (423)
||..+.|+.+ ++.++.
T Consensus 86 ~g~~~~g~~l--~V~~a~ 101 (108)
T 2jvo_A 86 HGKSFANQPL--EVVYSK 101 (108)
T ss_dssp TTCEETTEEC--EEESCS
T ss_pred CCCEECCeEE--EEEEec
Confidence 9999988654 455553
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-17 Score=130.21 Aligned_cols=87 Identities=28% Similarity=0.351 Sum_probs=81.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeE--------EEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--------AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~--------v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~ 184 (423)
..+.++|||+|||+++++++|+++| +.||.|.. ++|+.++.+++++|||||+|.+.++|++|++.||+..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4467889999999999999999999 89999999 99999999999999999999999999999999999999
Q ss_pred cCcceEEecccCCCcc
Q 014513 185 STRPMRISAATPKKTT 200 (423)
Q Consensus 185 ~g~~i~v~~a~~~~~~ 200 (423)
.|++|+|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876554
No 323
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1e-14 Score=116.80 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcce-EEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGY-GFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 17 ~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
+..+.....|||+|||+.+++++|+++|++||.|.+|+|+. + .|| |||+|.+.++|.+|++.|||..|.++..
T Consensus 19 ~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 19 PSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp CCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred CCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 33445566678999999999999999999999999999975 2 286 9999999999999999999999999777
Q ss_pred eEeeeccccCC
Q 014513 96 NFRLNWASFGI 106 (423)
Q Consensus 96 ~v~~~~a~~~~ 106 (423)
.+++.++....
T Consensus 93 ~l~V~~Ak~~~ 103 (124)
T 2e5i_A 93 TLKIEYARPTR 103 (124)
T ss_dssp EEEEECCSCSC
T ss_pred EEEEEEecCCc
Confidence 88888886543
No 324
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=5.8e-15 Score=115.33 Aligned_cols=79 Identities=30% Similarity=0.475 Sum_probs=72.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
..+.++|||+|||+++++++|+++| +.||.|..|+++ +|||||+|.+.++|++|++.||+..+.|++|.|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAF-SQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 3457899999999999999999999 899999999886 4599999999999999999999999999999999
Q ss_pred cccCCCcc
Q 014513 193 AATPKKTT 200 (423)
Q Consensus 193 ~a~~~~~~ 200 (423)
++.++...
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99876654
No 325
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=2.4e-15 Score=119.94 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=61.5
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~ 94 (423)
.....++|||+|||+++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++|++.|||..|.++.
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3456789999999999999999999999999999999765 89999999999999999999999999977
No 326
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=117.94 Aligned_cols=81 Identities=22% Similarity=0.443 Sum_probs=74.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEe
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~ 192 (423)
....++|||+|||+++++++|+++| +.||.|..|+|+.+ +|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHH-HHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3457899999999999999999999 89999999999876 7899999999999999999999999999999999
Q ss_pred cccCCCcc
Q 014513 193 AATPKKTT 200 (423)
Q Consensus 193 ~a~~~~~~ 200 (423)
++.++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99886553
No 327
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=3.5e-15 Score=128.29 Aligned_cols=86 Identities=28% Similarity=0.385 Sum_probs=79.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..|.|+.++ +++++|||||+|.+.++|.+|++.+|+..+.|++|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHH-HHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457899999999999999999999 899999999999998 8999999999999999999999999999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.....
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99876443
No 328
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=112.94 Aligned_cols=80 Identities=20% Similarity=0.438 Sum_probs=72.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhC--CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcc
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQY--PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~--g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~ 188 (423)
....+.++|||+|||+++++++|+++| +.| |.|..++++ +|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEF-NNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHH-HTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 344567899999999999999999999 899 999998764 679999999999999999999999999999
Q ss_pred eEEecccCCCc
Q 014513 189 MRISAATPKKT 199 (423)
Q Consensus 189 i~v~~a~~~~~ 199 (423)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 329
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=5.8e-16 Score=120.87 Aligned_cols=82 Identities=27% Similarity=0.531 Sum_probs=76.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
...++|||+|||+++++++|+++| +.||.|..++|+.++ +|+++|||||+|.+.++|++|+. ++..+.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFF-ARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 356889999999999999999999 999999999999998 89999999999999999999998 99999999999999
Q ss_pred ccCCCc
Q 014513 194 ATPKKT 199 (423)
Q Consensus 194 a~~~~~ 199 (423)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876544
No 330
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=6.1e-15 Score=113.77 Aligned_cols=78 Identities=15% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCCCCCceEEEeCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 111 PDAGPEHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~-~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
....+.++|||+|||+ ++++++|+++| +.||.|.++++. +|||||+|.+.++|.+|++.+||..+.|+.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F-~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIF-SPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHH-GGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445688999999998 99999999999 899999999883 7899999999999999999999999999999
Q ss_pred EEecccCC
Q 014513 190 RISAATPK 197 (423)
Q Consensus 190 ~v~~a~~~ 197 (423)
+|.++.++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998765
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=5.2e-15 Score=118.96 Aligned_cols=85 Identities=13% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcce-EEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 014513 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGY-GFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (423)
Q Consensus 18 ~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afVeF~~~~~A~~al~~l~g~~~~~~~~~ 96 (423)
..+....+|||+||++.+++++|+++|++||.|.+|+|+... +|+ |||+|.+.++|++|++.|||..|.+..+.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 344566778899999999999999999999999999988742 577 99999999999999999999999997788
Q ss_pred EeeeccccCCC
Q 014513 97 FRLNWASFGIG 107 (423)
Q Consensus 97 v~~~~a~~~~~ 107 (423)
+++.++.....
T Consensus 98 LrI~~ak~~~l 108 (130)
T 3zzy_A 98 LRIDFSKLTSL 108 (130)
T ss_dssp EEEEECSCSSC
T ss_pred EEEEecCCCce
Confidence 88888865443
No 332
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.8e-15 Score=114.21 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=74.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEE-EEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGA-KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 111 ~~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v-~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
+.....++|||+|||+++++++|+++| +.||.|..+ .++.++.+++ |||+|.+.++|.+|++.|||..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLL-VQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHH-HHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 344457899999999999999999999 899999999 4888876544 9999999999999999999999999999
Q ss_pred EEecccCCC
Q 014513 190 RISAATPKK 198 (423)
Q Consensus 190 ~v~~a~~~~ 198 (423)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998863
No 333
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=121.15 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=69.0
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEV----VSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v----~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
.++.++|||+|||+++++++|+++|++||.| .+|+|+.++ +|+++|||||+|.+.++|++||+. |+..|.++.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4677899999999999999999999999975 699999986 899999999999999999999975 9999988755
Q ss_pred eEe
Q 014513 96 NFR 98 (423)
Q Consensus 96 ~v~ 98 (423)
.|.
T Consensus 98 ~V~ 100 (123)
T 2dha_A 98 ELF 100 (123)
T ss_dssp CCE
T ss_pred EEE
Confidence 443
No 334
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.7e-15 Score=113.78 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=66.9
Q ss_pred CcCCccEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 19 TLEEVRTLWIGDLQY-WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~-~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
...+.++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|||..+.++.+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456789999999998 99999999999999999999983 689999999999999999999999999977776
Q ss_pred eeecc
Q 014513 98 RLNWA 102 (423)
Q Consensus 98 ~~~~a 102 (423)
.....
T Consensus 78 ~~a~~ 82 (96)
T 2kvi_A 78 EVSSS 82 (96)
T ss_dssp EEEEC
T ss_pred EEcCc
Confidence 66544
No 335
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.4e-15 Score=111.71 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=72.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..+++++ +||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLF-ERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHH-HHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 44567899999999999999999999 8999999999974 39999999999999999999999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 336
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=116.09 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=73.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|||+++++++|+++| +.||.|..+ ..+++++|||||+|.+.++|.+|+..++|..+.|++|+|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F-~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHH-CSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-hhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467899999999999999999999 899988766 346899999999999999999999999999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99977654
No 337
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=7.1e-15 Score=126.35 Aligned_cols=81 Identities=21% Similarity=0.382 Sum_probs=74.3
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEee
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~~ 99 (423)
....++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+|++.|||..|.++.+.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999998 999999999999999999999999999999997766655
Q ss_pred ec
Q 014513 100 NW 101 (423)
Q Consensus 100 ~~ 101 (423)
..
T Consensus 164 a~ 165 (177)
T 2f3j_A 164 VA 165 (177)
T ss_dssp ES
T ss_pred ec
Confidence 43
No 338
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5e-15 Score=113.37 Aligned_cols=80 Identities=26% Similarity=0.458 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCC-eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCC-ceecCcceE
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMR 190 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~-v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g-~~~~g~~i~ 190 (423)
..+.++|||+|||+++++++|+++| +.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|++|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLF-GDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3457889999999999999999999 89999 6666652 478999999999999999999999 999999999
Q ss_pred EecccCCCcc
Q 014513 191 ISAATPKKTT 200 (423)
Q Consensus 191 v~~a~~~~~~ 200 (423)
|.++.++...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876553
No 339
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=110.84 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=64.8
Q ss_pred CcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceEe
Q 014513 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (423)
Q Consensus 19 ~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v~ 98 (423)
.....++|||+|||+++++++|+++|++||.|.+| +.++.++. ||||+|.+.++|.+|++ |||..|.++.+.|+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 45577899999999999999999999999999987 55554555 99999999999999998 99999999665554
No 340
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=9.6e-15 Score=115.54 Aligned_cols=79 Identities=28% Similarity=0.468 Sum_probs=72.0
Q ss_pred CCCCCceEEEeCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 112 DAGPEHSIFVGDLAPD-VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~-~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
.....++|||+|||++ +++++|+++| +.||.|..|++ ++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F-~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIF-SKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHH-GGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3345689999999999 9999999999 89999999988 578999999999999999999999999999999
Q ss_pred EecccCCCc
Q 014513 191 ISAATPKKT 199 (423)
Q Consensus 191 v~~a~~~~~ 199 (423)
|.++.+.+.
T Consensus 94 V~~a~~~~~ 102 (110)
T 1wf1_A 94 INMAGEPKP 102 (110)
T ss_dssp EEESCCCCS
T ss_pred EEECCCCCC
Confidence 999975443
No 341
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=108.20 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=67.2
Q ss_pred CCCce-EEEeCCCCCCCHHH----HHHHHHhhC-CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 114 GPEHS-IFVGDLAPDVTDYL----LQETFRSQY-PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 114 ~~~~~-l~vgnLp~~~t~~~----l~~~F~~~~-g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
.++.+ |||+|||+.+++++ |+++| +.| |+|.+| |+ |+|||+|.+.++|.+|++.|+|..+.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF-~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLS-DNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHH-HTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHH-HHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34555 99999999999988 55899 899 599998 34 9999999999999999999999999999
Q ss_pred ceEEecccCCCcc
Q 014513 188 PMRISAATPKKTT 200 (423)
Q Consensus 188 ~i~v~~a~~~~~~ 200 (423)
+|+|.+|..+...
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999877654
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=7.1e-15 Score=111.29 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++|||+|||+++++++|+++| +.| .|.++++. +++|||||+|.+.++|++|++.+||..+.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F-~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLL-KDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHT-CSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-hhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 46789999999999999999999 899 99999884 67999999999999999999999999999999999998
Q ss_pred cCCC
Q 014513 195 TPKK 198 (423)
Q Consensus 195 ~~~~ 198 (423)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 343
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=117.15 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecc
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a 194 (423)
..++|||+|||+++++++|+++| +.||.|..|.|+. ++|||||+|.+.++|++|++.|||..+.|++|.|.++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETF-SRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999 8999999998864 5789999999999999999999999999999999998
Q ss_pred cCCC
Q 014513 195 TPKK 198 (423)
Q Consensus 195 ~~~~ 198 (423)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 6643
No 344
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=115.88 Aligned_cols=65 Identities=20% Similarity=0.414 Sum_probs=60.1
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CCCcceEEEEEcCHHHHHHHHHHc
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT---GQPEGYGFVEFVSHAAAERVLQTY 85 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afVeF~~~~~A~~al~~l 85 (423)
.+..++|||+|||+++++++|+++|++||.|. +.++.++.+ |.++|||||+|.+.++|++|++.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 35678999999999999999999999999999 888887766 799999999999999999999988
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.7e-14 Score=112.53 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=67.6
Q ss_pred CCcceEEEecCCC-----CCCHHHHHHHhhhcCCeEEEEEeC-------CCcEEEEEeCChHHHHHHHHHhCCeEeCceE
Q 014513 231 ITNTTIFVGNLDP-----NVTEEELKQTFLHFGEIVNVKIPM-------GRGCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (423)
Q Consensus 231 ~~~~~l~V~nL~~-----~~te~~L~~~F~~~G~I~~v~i~~-------~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~ 298 (423)
.++++|+|.||.. +-++++|+++|++||.|.+|.|+. ++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3478999999963 237899999999999999999974 3799999999999999999999999999999
Q ss_pred EEEEEccc
Q 014513 299 VRISWGRK 306 (423)
Q Consensus 299 l~v~~a~~ 306 (423)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999873
No 346
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.7e-14 Score=109.39 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=68.0
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
......+.++|||+|| ++++++|+++|++||.|.+|+|. .++|||||+|.+.++|.+|++.|||..|.++
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-- 77 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV-- 77 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE--
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe--
Confidence 3455667899999996 89999999999999999999985 3579999999999999999999999999885
Q ss_pred eEeeecccc
Q 014513 96 NFRLNWASF 104 (423)
Q Consensus 96 ~v~~~~a~~ 104 (423)
.+++.|+..
T Consensus 78 ~l~v~~a~~ 86 (97)
T 1x5p_A 78 QLKVNIARK 86 (97)
T ss_dssp EEEEECCSS
T ss_pred EEEEEECCC
Confidence 555666643
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.5e-15 Score=116.32 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=67.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCC---CCCcceEEEEeCCHHHHHHHHHhhCCceecCcce
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNT---GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~t---g~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i 189 (423)
....++|||+|||+++++++|+++| +.||.|. +.++.++.+ |+++|||||+|.+.++|++|++.++ .++|+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASF-RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHT-TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 3457889999999999999999999 9999999 889988877 7999999999999999999999883 3566666
Q ss_pred EEeccc
Q 014513 190 RISAAT 195 (423)
Q Consensus 190 ~v~~a~ 195 (423)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 655443
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.4e-15 Score=117.69 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=70.9
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcC----HHH----HHHHHH--HcCCCC
Q 014513 24 RTLWIGDL----QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVS----HAA----AERVLQ--TYNGTP 89 (423)
Q Consensus 24 r~l~V~nL----p~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~----~~~----A~~al~--~l~g~~ 89 (423)
..|+|+|| |+.+++.+|+.+|+.||+|.+|+++.|+.||.++|||||+|.+ +++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 889988 789999
Q ss_pred CCCccceEeeecc
Q 014513 90 MPGTEQNFRLNWA 102 (423)
Q Consensus 90 ~~~~~~~v~~~~a 102 (423)
|.|+.+.|.++..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9998888877654
No 349
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=4e-14 Score=123.48 Aligned_cols=117 Identities=18% Similarity=0.276 Sum_probs=88.1
Q ss_pred CHHHHHHHHHhh--CCceecCcceEEecccCCCcccchhhhhhhcccCCCCCCCCCCccCCCCCCCCcceEEEecCCCCC
Q 014513 168 DENERNRAMTEM--NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNV 245 (423)
Q Consensus 168 ~~~~a~~a~~~~--~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~ 245 (423)
+.+.+..|++.. ....+.+....+............... ......++|||+|||.++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~---------------------~~~~~~~~l~V~nLp~~~ 121 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEY---------------------KNDVKNRSVYIKGFPTDA 121 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHH---------------------HHHHHHTEEEEECCCTTC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhh---------------------hhccccCEEEecCCCCcC
Confidence 678888898877 555666655555544221111000000 011235899999999999
Q ss_pred CHHHHHHHhhhcCCeEEEEEeC-----CCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 246 TEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 246 te~~L~~~F~~~G~I~~v~i~~-----~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
|+++|+++|++||.|.+|.++. .+|||||+|.+.++|++|+..++ ..++|+.|+|.+++.
T Consensus 122 t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 122 TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 9999999999999999999986 37999999999999999998765 589999999998773
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.3e-15 Score=114.82 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=70.4
Q ss_pred CCCCCceEEE--eCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee-----
Q 014513 112 DAGPEHSIFV--GDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC----- 184 (423)
Q Consensus 112 ~~~~~~~l~v--gnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~----- 184 (423)
...++++||| |||++++++++|+++| ++||.|.+|.|+. .||||||+|.+.++|++|++.|||..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F-~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVL-EKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHH-HHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHH-HhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 4456788999 7799999999999999 9999999998764 378999999999999999999999988
Q ss_pred cCcceEEecccCCC
Q 014513 185 STRPMRISAATPKK 198 (423)
Q Consensus 185 ~g~~i~v~~a~~~~ 198 (423)
.+++|.|.++....
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 68899998876543
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=1.5e-14 Score=109.57 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=63.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee--cCcce
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC--STRPM 189 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~--~g~~i 189 (423)
...+.++|||+|||+++|+++|+++| +.||.|.+|+|+++ +||||||+|.+.++|++ +++..+ .++.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F-~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFF-CQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-hccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34567899999999999999999999 99999999999874 79999999999999984 455554 69999
Q ss_pred EEecccCCCc
Q 014513 190 RISAATPKKT 199 (423)
Q Consensus 190 ~v~~a~~~~~ 199 (423)
.|.++.++..
T Consensus 77 ~v~~a~~k~~ 86 (89)
T 3d2w_A 77 HISNAEPKHN 86 (89)
T ss_dssp EEEECC----
T ss_pred EEEEcCCCCc
Confidence 9999887653
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=124.27 Aligned_cols=86 Identities=26% Similarity=0.432 Sum_probs=74.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEE--E---eeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAK--V---VTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 113 ~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~--i---~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
..+.++|||+|||+++|+++|+++| +.||.|..+. + +....+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIF-GRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHH-GGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999 8999998741 1 11124689999999999999999999999999999999
Q ss_pred ceEEecccCCCc
Q 014513 188 PMRISAATPKKT 199 (423)
Q Consensus 188 ~i~v~~a~~~~~ 199 (423)
+|.|.++.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976544
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.2e-14 Score=111.17 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=69.3
Q ss_pred CCCcceEEEecCCCCCC-----------HHHHHHHhhhcCCeEEEEEeC--CCcEEEEEeCChHHHHHHHHHhCCeEeCc
Q 014513 230 DITNTTIFVGNLDPNVT-----------EEELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQ 296 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~~t-----------e~~L~~~F~~~G~I~~v~i~~--~~g~aFV~F~~~~~A~~Al~~l~g~~i~g 296 (423)
..++++|+|.||....+ +++|+++|++||.|.+|.|.. .+|||||+|.+.++|++|+..|||+.|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34579999999954432 589999999999999998753 48999999999999999999999999999
Q ss_pred eEEEEEEcccCC
Q 014513 297 QQVRISWGRKQD 308 (423)
Q Consensus 297 ~~l~v~~a~~~~ 308 (423)
++|+|.++.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998654
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.9e-14 Score=108.58 Aligned_cols=72 Identities=22% Similarity=0.546 Sum_probs=65.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHT----G-------EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT 88 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~ 88 (423)
.++.++|||+|||+++++++|+++|++| | .|.+|++.++ +|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4578999999999999999999999999 8 8999998765 699999999999999999 99999
Q ss_pred CCCCccceEe
Q 014513 89 PMPGTEQNFR 98 (423)
Q Consensus 89 ~~~~~~~~v~ 98 (423)
.+.++.+.|+
T Consensus 76 ~~~g~~l~V~ 85 (87)
T 2hzc_A 76 IFQGQSLKIR 85 (87)
T ss_dssp EETTEECEEE
T ss_pred EECCeEEEEe
Confidence 9999776654
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=6.1e-14 Score=109.44 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCCceEEEeCCCC-----CCCHHHHHHHHHhhCCCeeEEEEeeCCCC-CCCcceEEEEeCCHHHHHHHHHhhCCceecCc
Q 014513 114 GPEHSIFVGDLAP-----DVTDYLLQETFRSQYPSVRGAKVVTDPNT-GRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (423)
Q Consensus 114 ~~~~~l~vgnLp~-----~~t~~~l~~~F~~~~g~v~~v~i~~~~~t-g~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~ 187 (423)
.++++|++.||.. +-++++|++.| ++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4578899999962 23789999999 99999999999998764 68999999999999999999999999999999
Q ss_pred ceEEecccC
Q 014513 188 PMRISAATP 196 (423)
Q Consensus 188 ~i~v~~a~~ 196 (423)
+|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=8.9e-14 Score=121.27 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHc--CCCCCCCccceEeeeccccCCCCCCCC-------CCCCceEEEeCCCCCCCHHHHHHHHHhhCCCe
Q 014513 74 SHAAAERVLQTY--NGTPMPGTEQNFRLNWASFGIGEKRPD-------AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV 144 (423)
Q Consensus 74 ~~~~A~~al~~l--~g~~~~~~~~~v~~~~a~~~~~~~~~~-------~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v 144 (423)
+.+.+..|++.. ....+.+....++.... .+.+. ....++|||+|||+++++++|+++| +.||.|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~-----~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~v 136 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS-----KPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL-EDKGQV 136 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT-----SCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHH-TTSCCE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc-----CCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHH-hcCCCE
Confidence 567778888765 33344444444443311 11111 1235789999999999999999999 999999
Q ss_pred eEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 145 RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 145 ~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
..|+|+++. +++++|||||+|.+.++|++|+..+ +..+.|++|.|.++..
T Consensus 137 ~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 137 LNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp EEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred EEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 999999986 4999999999999999999999865 4589999999998755
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-14 Score=107.15 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=67.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEec
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~ 193 (423)
.++++|||+|||+++++++|+++| +.||.|.+++|+++ ++|||||+|.+.++|++|+. ....+.+++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFF-SQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHS-TTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEe
Confidence 356899999999999999999999 99999999999865 78999999999999986533 13445899999999
Q ss_pred ccCCCcc
Q 014513 194 ATPKKTT 200 (423)
Q Consensus 194 a~~~~~~ 200 (423)
+.++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8876553
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1.2e-13 Score=107.77 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=66.2
Q ss_pred CCcceEEEecCC--CCCC--------HHHHHHHhhhcCCeEEEEEeCC--------CcEEEEEeCChHHHHHHHHHhCCe
Q 014513 231 ITNTTIFVGNLD--PNVT--------EEELKQTFLHFGEIVNVKIPMG--------RGCGFVQFAARASAEEAILRMQGH 292 (423)
Q Consensus 231 ~~~~~l~V~nL~--~~~t--------e~~L~~~F~~~G~I~~v~i~~~--------~g~aFV~F~~~~~A~~Al~~l~g~ 292 (423)
.++++|.|.|+- ..+. +++|++.|++||.|++|.|+++ +|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 457899999983 3333 3799999999999999999853 699999999999999999999999
Q ss_pred EeCceEEEEEEcc
Q 014513 293 MIGQQQVRISWGR 305 (423)
Q Consensus 293 ~i~g~~l~v~~a~ 305 (423)
.++||.|+|.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999976
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1.6e-13 Score=110.21 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=71.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEE
Q 014513 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v 191 (423)
...+.++|||+|| ++++++|+++| +.||.|.+|.+. +++|||||+|.+.++|.+|+..|+|..+.|++|.|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F-~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHH-STTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHH-HccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999996 79999999999 999999999985 57899999999999999999999999999999999
Q ss_pred ecccCCCc
Q 014513 192 SAATPKKT 199 (423)
Q Consensus 192 ~~a~~~~~ 199 (423)
.++.++..
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987654
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.3e-13 Score=102.33 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=63.9
Q ss_pred cceEEEecCC-------CCCCHHHHHHHhhhcCCeEEEEEe-CCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEc
Q 014513 233 NTTIFVGNLD-------PNVTEEELKQTFLHFGEIVNVKIP-MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (423)
Q Consensus 233 ~~~l~V~nL~-------~~~te~~L~~~F~~~G~I~~v~i~-~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a 304 (423)
..+|.|.-.. ..+|+++|+++|++||.|.+|.|+ ..+|||||+|.+.++|++|++.+++ +.|++|+|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4566676544 458999999999999999999997 4689999999999999999998654 68999999999
Q ss_pred ccCCC
Q 014513 305 RKQDV 309 (423)
Q Consensus 305 ~~~~~ 309 (423)
+++..
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 86643
No 361
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=2.3e-13 Score=127.95 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCCcceEEEec--CCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEe---Cce--EEEEE
Q 014513 230 DITNTTIFVGN--LDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI---GQQ--QVRIS 302 (423)
Q Consensus 230 ~~~~~~l~V~n--L~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i---~g~--~l~v~ 302 (423)
..++.+|||+| |+..+|+++|+++|++||+|.+|.++.+||||||+|.+.++|++|++.|||+.+ .|+ .|.|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 35578999999 578999999999999999999999999999999999999999999999999986 244 68888
Q ss_pred Ecc
Q 014513 303 WGR 305 (423)
Q Consensus 303 ~a~ 305 (423)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 885
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=1e-13 Score=108.04 Aligned_cols=67 Identities=18% Similarity=0.400 Sum_probs=60.0
Q ss_pred EecCCCCCCHHHHHHHh------------hhcCCeEEEEEeCC-----CcEEEEEeCChHHHHHHHHHhCCeEeCceEEE
Q 014513 238 VGNLDPNVTEEELKQTF------------LHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (423)
Q Consensus 238 V~nL~~~~te~~L~~~F------------~~~G~I~~v~i~~~-----~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~ 300 (423)
+.||+..+++++|+++| ++||.|.+|.|+++ +|||||+|.+.++|.+|+..|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777778888777666 99999999999874 79999999999999999999999999999999
Q ss_pred EEEc
Q 014513 301 ISWG 304 (423)
Q Consensus 301 v~~a 304 (423)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.1e-12 Score=102.27 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCCCCceEEEeCCCCCCC-----------HHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 112 DAGPEHSIFVGDLAPDVT-----------DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~~t-----------~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
...++++|+|.||....+ +++|+++| ++||.|.+|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 455688999999954432 68999999 89999999965 554 389999999999999999999999
Q ss_pred CceecCcceEEecccCCCcc
Q 014513 181 GVFCSTRPMRISAATPKKTT 200 (423)
Q Consensus 181 g~~~~g~~i~v~~a~~~~~~ 200 (423)
|..+.|++|.|.++.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999876543
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=8.9e-13 Score=104.86 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=65.5
Q ss_pred CcceEEEecCCC--CC---CHHHHHHHhhhcCCeEEEEEeCC----------CcEEEEEeCChHHHHHHHHHhCCeEeCc
Q 014513 232 TNTTIFVGNLDP--NV---TEEELKQTFLHFGEIVNVKIPMG----------RGCGFVQFAARASAEEAILRMQGHMIGQ 296 (423)
Q Consensus 232 ~~~~l~V~nL~~--~~---te~~L~~~F~~~G~I~~v~i~~~----------~g~aFV~F~~~~~A~~Al~~l~g~~i~g 296 (423)
++++|+|.|+-. ++ .++||++.|++||.|.+|.|+.+ +|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999842 22 36899999999999999999763 3899999999999999999999999999
Q ss_pred eEEEEEEcc
Q 014513 297 QQVRISWGR 305 (423)
Q Consensus 297 ~~l~v~~a~ 305 (423)
|.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999976
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=5.4e-13 Score=118.97 Aligned_cols=77 Identities=22% Similarity=0.437 Sum_probs=67.8
Q ss_pred cCCccEEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 014513 20 LEEVRTLWIGDLQYWF---------DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~---------~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~ 90 (423)
....++|||+|||..+ +|++|+.+|++||.|++|+|+.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5578999999999998 79999999999999999999864 69999999999999999999999999
Q ss_pred ------------CCccceEeeecccc
Q 014513 91 ------------PGTEQNFRLNWASF 104 (423)
Q Consensus 91 ------------~~~~~~v~~~~a~~ 104 (423)
.+ ..+.+.|+..
T Consensus 205 ~~~~~~e~~~~~~g--r~L~V~wA~~ 228 (240)
T 3u1l_A 205 LLPSDKEWDDRREG--TGLLVKWANE 228 (240)
T ss_dssp CCTTSTTGGGGGGS--CCCEEEECC-
T ss_pred eccccccccccCCC--CEEEEEEccC
Confidence 44 4566677653
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.9e-12 Score=102.23 Aligned_cols=75 Identities=12% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCcceEEEecCCCCCC----------HHHHHHHhhhcCCeEEEEEeCC--CcEEEEEeCChHHHHHHHHHhCCeEeCceE
Q 014513 231 ITNTTIFVGNLDPNVT----------EEELKQTFLHFGEIVNVKIPMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~t----------e~~L~~~F~~~G~I~~v~i~~~--~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~ 298 (423)
.++++|.+.|+-..-. ++||++.|++||.|.+|.|.++ +|++||+|.+.++|.+|++.|||+.++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3468899999844322 2688999999999999999875 799999999999999999999999999999
Q ss_pred EEEEEcc
Q 014513 299 VRISWGR 305 (423)
Q Consensus 299 l~v~~a~ 305 (423)
|+|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999987
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=1e-12 Score=102.52 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCceEEEeCC--CCCCC--------HHHHHHHHHhhCCCeeEEEEeeCCCC--CCCcceEEEEeCCHHHHHHHHHhhCC
Q 014513 114 GPEHSIFVGDL--APDVT--------DYLLQETFRSQYPSVRGAKVVTDPNT--GRSKGYGFVKFLDENERNRAMTEMNG 181 (423)
Q Consensus 114 ~~~~~l~vgnL--p~~~t--------~~~l~~~F~~~~g~v~~v~i~~~~~t--g~~~G~afV~f~~~~~a~~a~~~~~g 181 (423)
.+++.|.+.|+ |.++. +++|++.| ++||.|.+|+|++++.+ ++++|++||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHH-HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHH-HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35778899988 33443 47999999 89999999999998765 47899999999999999999999999
Q ss_pred ceecCcceEEecccC
Q 014513 182 VFCSTRPMRISAATP 196 (423)
Q Consensus 182 ~~~~g~~i~v~~a~~ 196 (423)
..+.||+|++.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998754
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=2.1e-12 Score=102.69 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCceEEEeCCCC-----CCCHHHHHHHHHhhCCCeeEEEEeeCCC----CCCCcceEEEEeCCHHHHHHHHHhhCCceec
Q 014513 115 PEHSIFVGDLAP-----DVTDYLLQETFRSQYPSVRGAKVVTDPN----TGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 115 ~~~~l~vgnLp~-----~~t~~~l~~~F~~~~g~v~~v~i~~~~~----tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
+++.|++.|+-. +-.+++|++.| ++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 577899999832 22478999999 8999999999999865 4678899999999999999999999999999
Q ss_pred CcceEEecccC
Q 014513 186 TRPMRISAATP 196 (423)
Q Consensus 186 g~~i~v~~a~~ 196 (423)
||.|.+.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998754
No 369
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-11 Score=89.90 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=64.4
Q ss_pred CCCcceEEEecCCC----CCCH----HHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEE
Q 014513 230 DITNTTIFVGNLDP----NVTE----EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (423)
Q Consensus 230 ~~~~~~l~V~nL~~----~~te----~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v 301 (423)
.++.-+|+|.-++. +.-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..++||.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 45678888888762 3333 6799999999999999999776 8999999999999998 9999999999999
Q ss_pred EEcccC
Q 014513 302 SWGRKQ 307 (423)
Q Consensus 302 ~~a~~~ 307 (423)
+++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998753
No 370
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.5e-11 Score=97.15 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=69.9
Q ss_pred CCCcceEEEecCCCC-CCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCC-hHHHHHHHHHhC--CeEeCceEEEEEEcc
Q 014513 230 DITNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAA-RASAEEAILRMQ--GHMIGQQQVRISWGR 305 (423)
Q Consensus 230 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~-~~~A~~Al~~l~--g~~i~g~~l~v~~a~ 305 (423)
-+.++.|+|+||+.. +++++|+++|++||.|.+|.+..+...|||+|.+ .++|.+|+..|+ +..|+|..++++...
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 356799999999999 9999999999999999999999999999999999 899999999995 677999999988655
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.3e-12 Score=101.73 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=60.8
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 014513 28 IGDLQYWFDENYLSSCF------------AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (423)
Q Consensus 28 V~nLp~~~~e~~L~~~F------------~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~ 95 (423)
+.+||..+++++|++.| ++||.|.+|+|++++ ++.++|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777777666 999999999999987 58899999999999999999999999999999776
Q ss_pred eEee
Q 014513 96 NFRL 99 (423)
Q Consensus 96 ~v~~ 99 (423)
.+..
T Consensus 99 ~v~~ 102 (104)
T 1jmt_A 99 HAEL 102 (104)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 6543
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=7e-11 Score=90.84 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccCCCc
Q 014513 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (423)
Q Consensus 126 ~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~~~~ 199 (423)
.++++++|+++| ++||.|.+|.|+ ++++|||||+|.+.++|+.|++.+++ +.+++|+|.++.++..
T Consensus 27 ~~~te~~L~~~F-~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLL-QKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHH-HTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHH-HhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 578999999999 999999999997 47899999999999999999997544 6799999999877654
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.1e-11 Score=116.43 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=66.6
Q ss_pred CCcCCccEEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC---C
Q 014513 18 MTLEEVRTLWIGD--LQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP---G 92 (423)
Q Consensus 18 ~~~~~~r~l~V~n--Lp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~---~ 92 (423)
....++++|||+| |+..++|++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.|||+.+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 4577899999999 588999999999999999999987754 4699999999999999999999999873 3
Q ss_pred ccceEeeecc
Q 014513 93 TEQNFRLNWA 102 (423)
Q Consensus 93 ~~~~v~~~~a 102 (423)
+.+.+.+++.
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 4345555554
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.14 E-value=2.2e-10 Score=90.27 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=64.7
Q ss_pred CCceEEEeCCCCCC----------CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCcee
Q 014513 115 PEHSIFVGDLAPDV----------TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (423)
Q Consensus 115 ~~~~l~vgnLp~~~----------t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~ 184 (423)
+++.|.+.|+=... .+++|++.| ++||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||..+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHH-TTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHH-hccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46677777763221 246899999 899999999997653 599999999999999999999999999
Q ss_pred cCcceEEecccC
Q 014513 185 STRPMRISAATP 196 (423)
Q Consensus 185 ~g~~i~v~~a~~ 196 (423)
.||.|.+.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998754
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.9e-10 Score=84.24 Aligned_cols=75 Identities=31% Similarity=0.355 Sum_probs=64.5
Q ss_pred CCCCCcceEEEecCCCC------CCH---HHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceE
Q 014513 228 DNDITNTTIFVGNLDPN------VTE---EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (423)
Q Consensus 228 ~~~~~~~~l~V~nL~~~------~te---~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~ 298 (423)
...++.-+|+|.-++.+ ..+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+||+ |||..++||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 44567889999988743 232 5689999999999999999887 9999999999999998 9999999999
Q ss_pred EEEEEcc
Q 014513 299 VRISWGR 305 (423)
Q Consensus 299 l~v~~a~ 305 (423)
|+|++-.
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999643
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.5e-09 Score=85.62 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCCCCCcCCccEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcC-HHHHHHHHHHcC--CCC
Q 014513 14 HHHPMTLEEVRTLWIGDLQYW-FDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVS-HAAAERVLQTYN--GTP 89 (423)
Q Consensus 14 ~~~~~~~~~~r~l~V~nLp~~-~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~-~~~A~~al~~l~--g~~ 89 (423)
++.+......+.|+|+||++. +++++|+++|++||.|..|.+.++.. .|||+|.+ .++|..|++.+| +..
T Consensus 9 ~~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 9 HHGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred ccCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcE
Confidence 455677888999999999999 99999999999999999999988762 59999999 899999999995 667
Q ss_pred CCCccceEee
Q 014513 90 MPGTEQNFRL 99 (423)
Q Consensus 90 ~~~~~~~v~~ 99 (423)
|.+...++++
T Consensus 83 i~g~~~~~ev 92 (121)
T 1owx_A 83 LRNKEVTWEV 92 (121)
T ss_dssp TTSSSEEEEE
T ss_pred EeCcEEEEEE
Confidence 7776555554
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=6.4e-09 Score=76.73 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=62.5
Q ss_pred CCCceEEEeCCC----CCCCH----HHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceec
Q 014513 114 GPEHSIFVGDLA----PDVTD----YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (423)
Q Consensus 114 ~~~~~l~vgnLp----~~~t~----~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~ 185 (423)
++.-+|+|.-.+ .++-+ .+|.+.| +.||.|..++++.++ +||+|.+.++|.+|++ |||..+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQF-ASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHH-HTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHH-HhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 455677777665 23333 6799999 899999999999874 8999999999999998 9999999
Q ss_pred CcceEEecccCC
Q 014513 186 TRPMRISAATPK 197 (423)
Q Consensus 186 g~~i~v~~a~~~ 197 (423)
||.|+|+.+++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999988764
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=6.6e-09 Score=92.53 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=56.5
Q ss_pred CCHHHHHHHhhhcCCeEEEEEe----------CCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 245 VTEEELKQTFLHFGEIVNVKIP----------MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 245 ~te~~L~~~F~~~G~I~~v~i~----------~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
-.+++|++.|++||.|.++.|+ .++|++||+|.+.++|.+|++.|||+.++||.|++.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3578999999999999999997 347999999999999999999999999999999999976
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=5.6e-08 Score=73.30 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=68.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhc-----CCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEE
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHF-----GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~-----G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~ 303 (423)
..++|-+-|||..+++..|+.+.+++ |.|+.+.+.++.+=|+|+|.|...|.+|..+|+|.+|+|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35889999999999999999999999 9999999999999999999999999999999999999999999974
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=2.2e-08 Score=89.15 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEeeCCC----CCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceEEecccC
Q 014513 127 DVTDYLLQETFRSQYPSVRGAKVVTDPN----TGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (423)
Q Consensus 127 ~~t~~~l~~~F~~~~g~v~~v~i~~~~~----tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~v~~a~~ 196 (423)
+-.+++|.+.| ++||.|.+++|+++.. +++++|++||+|.+.++|.+|+..|||..+.||+|.+.++..
T Consensus 140 ~e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999 8999999999995543 458999999999999999999999999999999999988753
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=4.2e-08 Score=72.69 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCCCCceEEEeCCCCC-----CCH----HHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCc
Q 014513 112 DAGPEHSIFVGDLAPD-----VTD----YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (423)
Q Consensus 112 ~~~~~~~l~vgnLp~~-----~t~----~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~ 182 (423)
.-++.-+|+|.-++.+ +-+ .+|.+.| +.||.|..++++.|+ +||+|.+.++|.+|++ |||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTL-GSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHH-HHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHH-HHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 3456778999888643 322 5689999 899999999999984 9999999999999999 9999
Q ss_pred eecCcceEEecccC
Q 014513 183 FCSTRPMRISAATP 196 (423)
Q Consensus 183 ~~~g~~i~v~~a~~ 196 (423)
.+.||.|+|+.-.+
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 99999999986543
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=3e-06 Score=63.91 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=67.4
Q ss_pred cceEEEecCCCCC-CH----HHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcccC
Q 014513 233 NTTIFVGNLDPNV-TE----EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (423)
Q Consensus 233 ~~~l~V~nL~~~~-te----~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~~ 307 (423)
.++|+|.||+.++ .. +.++++|..|+++......++-.-..|.|.++++|.+|...||+..+.|+.|+|-++.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4789999998865 32 577899999999999999999888999999999999999999999999999999999844
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=9.5e-06 Score=61.26 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhC-----CCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcc
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQY-----PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~-----g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~ 188 (423)
...++|-+-|||..+++..|+.++ +.+ |.+..+.+..|.. -|+|+|.|...|.+|.-.++|..|.||+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lv-e~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFL-QEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHH-HHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHH-hhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 347889999999999999999999 899 9999999998853 6999999999999999889999999999
Q ss_pred eEEec
Q 014513 189 MRISA 193 (423)
Q Consensus 189 i~v~~ 193 (423)
|++.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99854
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=5e-05 Score=56.92 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=60.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHh----hCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecCcceE
Q 014513 115 PEHSIFVGDLAPDVTDYLLQETFRS----QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (423)
Q Consensus 115 ~~~~l~vgnLp~~~t~~~l~~~F~~----~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g~~i~ 190 (423)
...+|.|.|||++++++.|.-+|.+ -.|+|.+++... +-|+|+|.+.+.|++.++ ...+.+.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4578999999999999999999954 257888887754 368999999999999998 347888889999
Q ss_pred EecccCC
Q 014513 191 ISAATPK 197 (423)
Q Consensus 191 v~~a~~~ 197 (423)
|....++
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9775543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=0.0003 Score=52.70 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=62.0
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhc-----CCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEccc
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHF-----GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~-----G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~~ 306 (423)
..++|.|.|||+.++++.|.-+|+.- |.|.+++... +-|+|+|.+.+.|++.|+. ..+.|.+.+|.|.-..+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 36899999999999999999999872 7899999886 8999999999999998875 25789999999985443
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00028 Score=52.23 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=58.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCc--ceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE--GYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~--g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
.+|.|++||+.++|+++.+.++....+.-...+..+.+.... .-|||.|.+.+++....+.++|..+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999887777777766444333 349999999999999999999988754
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.56 E-value=0.00079 Score=49.83 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=60.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC--------CcEEEEEeCChHHHHHHHHHhCCeEe-Cce----EEE
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--------RGCGFVQFAARASAEEAILRMQGHMI-GQQ----QVR 300 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~--------~g~aFV~F~~~~~A~~Al~~l~g~~i-~g~----~l~ 300 (423)
++|.|++||+.+|++++.+.+.....+.......+ -.-|+|.|.+.+++......++|+.+ +.+ +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 58999999999999999999999998887777553 26799999999999999999999985 322 345
Q ss_pred EEEccc
Q 014513 301 ISWGRK 306 (423)
Q Consensus 301 v~~a~~ 306 (423)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666653
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.49 E-value=0.0004 Score=51.35 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=48.6
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~ 86 (423)
+.....++| ++|+.+...||.++|+.||.| .|+.+.+. .|||.|.+++.|..|+..++
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344555777 999999999999999999954 67777764 79999999999999998764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00028 Score=53.13 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=59.4
Q ss_pred ccEEEEcCCCCCC-CH----HHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceE
Q 014513 23 VRTLWIGDLQYWF-DE----NYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (423)
Q Consensus 23 ~r~l~V~nLp~~~-~e----~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g~~~~~~~~~v 97 (423)
-.+|+|.||+.++ .. +.++++|..|+++...-..++- .=..|.|.+.++|.+|...|++..+.|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~-- 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM-- 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC--
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee--
Confidence 3579999999876 22 5678999999999888877754 458999999999999999999999999754
Q ss_pred eeeccc
Q 014513 98 RLNWAS 103 (423)
Q Consensus 98 ~~~~a~ 103 (423)
++-++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 444443
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=0.0007 Score=52.49 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=62.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCc-eEEEEEEcc
Q 014513 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQ-QQVRISWGR 305 (423)
Q Consensus 231 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g-~~l~v~~a~ 305 (423)
...+-|.|-+.|+.. -..|..+|++||.|++...........|+|.++.+|++||.. ||..|+| -.|-|....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 446889999998875 667778899999999999877789999999999999999985 9999985 677777643
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.10 E-value=0.0011 Score=49.20 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=46.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 014513 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (423)
Q Consensus 24 r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~ 86 (423)
..++| ++|+.+...||.++|+.|| -..|+.+-+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 4567777764 79999999999999998765
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.07 E-value=0.0009 Score=49.81 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=51.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCc--ceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE--GYGFVEFVSHAAAERVLQTYNGTPMPG 92 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~--g~afVeF~~~~~A~~al~~l~g~~~~~ 92 (423)
.+-+|.|+.||+.+||+++.+.++.+-++.-...+..+.+.+.. .-|||.|.+.+++....+.++|..+..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45679999999999999988887765444333333323222222 349999999999999999999988754
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.79 E-value=0.0031 Score=46.93 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=57.2
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCC--------CcEEEEEeCChHHHHHHHHHhCCeEe-Cce----EE
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--------RGCGFVQFAARASAEEAILRMQGHMI-GQQ----QV 299 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~--------~g~aFV~F~~~~~A~~Al~~l~g~~i-~g~----~l 299 (423)
+-+|.|+.||+.+|++++.+.++..-++.......+ -..|+|.|.+.++.....+..+|+.+ +.+ +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 468999999999999999999888766655444332 25789999999999999999999985 322 45
Q ss_pred EEEEcc
Q 014513 300 RISWGR 305 (423)
Q Consensus 300 ~v~~a~ 305 (423)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.58 E-value=0.016 Score=42.86 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=45.4
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhC
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~ 290 (423)
.+.++| +.|.++...||.++|++||.|.---| +-..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 466777 99999999999999999995533222 36899999999999999998763
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.50 E-value=0.0026 Score=50.01 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=54.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEE-EEEeC-------------------CCcEEEEEeCChHHHHHHHHHhCCe
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVN-VKIPM-------------------GRGCGFVQFAARASAEEAILRMQGH 292 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~-v~i~~-------------------~~g~aFV~F~~~~~A~~Al~~l~g~ 292 (423)
...|.|-+.|++. ...+-+.|++||.|.+ +.+.+ +....-|+|+++.+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 4667888887765 4556667999999977 22211 356789999999999999985 999
Q ss_pred EeCceEEEEEEcc
Q 014513 293 MIGQQQVRISWGR 305 (423)
Q Consensus 293 ~i~g~~l~v~~a~ 305 (423)
.|+|..|-|...+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888765
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.47 E-value=0.0039 Score=46.27 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=44.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhC
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~ 290 (423)
...++| +.|.++...||.++|++||.|.---| +-..|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 356667 99999999999999999994332222 46899999999999999999774
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.45 E-value=0.011 Score=45.67 Aligned_cols=73 Identities=8% Similarity=0.150 Sum_probs=58.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhCCceecC-cceEEe
Q 014513 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST-RPMRIS 192 (423)
Q Consensus 114 ~~~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~g~~~~g-~~i~v~ 192 (423)
...+-|.|-+.|+.. ...|.++| ++||.|.+.... ....+-.|.|.+..+|++||. .||..+.+ -.|-|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F-~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQF-AQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHH-HTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHH-HhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 346779999999885 67788889 899999988762 224589999999999999999 69999974 556666
Q ss_pred ccc
Q 014513 193 AAT 195 (423)
Q Consensus 193 ~a~ 195 (423)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.18 E-value=0.0031 Score=61.21 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=43.5
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCc-EEEEEeCChHHHHHHHHH
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAILR 288 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g-~aFV~F~~~~~A~~Al~~ 288 (423)
.++|+|. .+..+++.+|.++|++||.|.++.+.+++| |+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4899997 789999999999999999999999998765 999999999999977654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.14 E-value=0.0027 Score=61.60 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=44.7
Q ss_pred cCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHH
Q 014513 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83 (423)
Q Consensus 20 ~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~ 83 (423)
..+.|+|+|. .|..+++.+|.++|++||+|.++..-.++ .-||.|||.+.+++..++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4567999997 79999999999999999999999776653 3699999999999997774
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.83 E-value=0.076 Score=41.68 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=54.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeC--------CCCC-----CCcceEEEEeCCHHHHHHHHHhhCC
Q 014513 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRG-AKVVTD--------PNTG-----RSKGYGFVKFLDENERNRAMTEMNG 181 (423)
Q Consensus 116 ~~~l~vgnLp~~~t~~~l~~~F~~~~g~v~~-v~i~~~--------~~tg-----~~~G~afV~f~~~~~a~~a~~~~~g 181 (423)
+.-|.|-+.|++ ....+.+.| ++||.|.+ +.+.+. +.+. ....+..|+|.+..+|.+|+. .||
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEecCHH-HHHHHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 445778888665 455677888 89999876 221110 0001 125678899999999999998 799
Q ss_pred ceecCcceEEecccC
Q 014513 182 VFCSTRPMRISAATP 196 (423)
Q Consensus 182 ~~~~g~~i~v~~a~~ 196 (423)
+.+.|..|-|.+.++
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999998888877754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.59 E-value=0.79 Score=45.23 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=46.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 014513 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (423)
Q Consensus 22 ~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~g 87 (423)
....++|+ +|..+...+|.++|+.||.+ +|+.+.+ ..|||.|.+.+.|..+++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 44577776 99999999999999999954 5554443 4699999999999999998863
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.34 E-value=2.5 Score=41.69 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=45.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhC
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~ 290 (423)
....++|+ .|..+...+|.+.|+.||.|. |. ..+...|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~-widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-IS-WIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EE-ECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EE-EEcCCeEEEEECCHHHHHHHHHHHH
Confidence 34567776 888999999999999999543 32 3367899999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=63.43 E-value=38 Score=24.17 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=54.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCC-------eEeCceEEEEE
Q 014513 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG-------HMIGQQQVRIS 302 (423)
Q Consensus 232 ~~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g-------~~i~g~~l~v~ 302 (423)
.+|-|.|-|+|..+-..++--.....|---.+... .|.|.|.|.+.++..-|++.|-+ -+|.|..+.|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvi 86 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVI 86 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeee
Confidence 36888999999998888887777788877777765 58999999999999999998722 12566666554
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=48.01 E-value=72 Score=22.71 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=47.8
Q ss_pred CCCCcCCccEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 014513 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (423)
Q Consensus 16 ~~~~~~~~r~l~V~nLp~~~~e~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afVeF~~~~~A~~al~~l~ 86 (423)
+.-+.+..+-|.|-|+|..+-..++.-.....|--.-|.- -.|.|.|.|.+.++-..|++.|-
T Consensus 5 hhhsikqnclikiinipqgtlkaevvlavrhlgyefycdy--------idgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 5 HHHSIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDY--------IDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -----CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEE--------CSSCEEEEESSHHHHHHHHHHHE
T ss_pred ccchhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeee--------ecCeeEEEecCChHHHHHHHHHH
Confidence 3446677889999999999999999888888886544543 23679999999999999998763
No 405
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=45.77 E-value=58 Score=21.58 Aligned_cols=56 Identities=7% Similarity=-0.036 Sum_probs=46.1
Q ss_pred cceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCChHHHHHHHHHh
Q 014513 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM 289 (423)
Q Consensus 233 ~~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l 289 (423)
..++.|.++.=.--...|...+.. ..|..+.+....+.+.|.|.+.++..++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 467889998877778899999999 99999999888889999998666667777764
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=42.00 E-value=22 Score=24.42 Aligned_cols=59 Identities=10% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCCHHHHHHHhhhcC-----CeEEEEEeCCCcEEEEEeCChHHHHHHHHHhCCeEeCceEEEEEEcc
Q 014513 244 NVTEEELKQTFLHFG-----EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (423)
Q Consensus 244 ~~te~~L~~~F~~~G-----~I~~v~i~~~~g~aFV~F~~~~~A~~Al~~l~g~~i~g~~l~v~~a~ 305 (423)
.++..+|..++..-+ .|-.|.|. ..|.||+-... .|.+++..|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 466677777776554 35556665 46888888654 4778899999999999999998764
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.72 E-value=1.1e+02 Score=21.90 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=23.9
Q ss_pred eeEEEEeeCCCCCCCcceEEEEeCCHHHHHHHHHhhC
Q 014513 144 VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (423)
Q Consensus 144 v~~v~i~~~~~tg~~~G~afV~f~~~~~a~~a~~~~~ 180 (423)
|..+.+.. ...||.||++...++...+++...
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 55555543 378999999999999888887433
No 408
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.69 E-value=1e+02 Score=19.72 Aligned_cols=55 Identities=7% Similarity=0.175 Sum_probs=41.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeCCh---HHHHHHHHH
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAAR---ASAEEAILR 288 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~~~---~~A~~Al~~ 288 (423)
.++.|.++.-.--...+...+.....|..+.+....+-+.|.|.+. ++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 4677888876656788999999999999999998889999998543 344555554
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.40 E-value=11 Score=30.25 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHhhhcCCeEEEEEeCCCcEEEEEeC
Q 014513 248 EELKQTFLHFGEIVNVKIPMGRGCGFVQFA 277 (423)
Q Consensus 248 ~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~ 277 (423)
+|+.++|...|.|+.+.. .||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--CCCeeEEeeC
Confidence 466678888888886554 5899999976
No 410
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=26.71 E-value=1.3e+02 Score=19.48 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=43.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhhhcCCeEEEEEeCCCcEEEEEeC----ChHHHHHHHHHh
Q 014513 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFA----ARASAEEAILRM 289 (423)
Q Consensus 234 ~~l~V~nL~~~~te~~L~~~F~~~G~I~~v~i~~~~g~aFV~F~----~~~~A~~Al~~l 289 (423)
.++.|.++.=.--...+...+.+...|..+.+....+.+.|.|. +.++..++++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46778887765556788999999999999999888899999995 445666677654
No 411
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=26.23 E-value=1.8e+02 Score=21.41 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEE----EeeCCCCCCCcceEEEEeCCHHHHHHH
Q 014513 126 PDVTDYLLQETFRSQYPSVRGAK----VVTDPNTGRSKGYGFVKFLDENERNRA 175 (423)
Q Consensus 126 ~~~t~~~l~~~F~~~~g~v~~v~----i~~~~~tg~~~G~afV~f~~~~~a~~a 175 (423)
...+..+|++.+.+.|+.-.++. +.+..-.|++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788999999988887533332 2333333466666654 5555555443
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.69 E-value=1.7e+02 Score=20.82 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=28.7
Q ss_pred CeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCCeE
Q 014513 259 EIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHM 293 (423)
Q Consensus 259 ~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g~~ 293 (423)
.|..+.++.. .||.||++...++...+++.+.|..
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCce
Confidence 3777777753 8999999999999999998887754
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.70 E-value=1.4e+02 Score=24.30 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred EEEEcCCCC---------CCCHHHHHHHh--hccCCeeEEEEEecCCCCCCcceEEEEEcC
Q 014513 25 TLWIGDLQY---------WFDENYLSSCF--AHTGEVVSIKIIRNKITGQPEGYGFVEFVS 74 (423)
Q Consensus 25 ~l~V~nLp~---------~~~e~~L~~~F--~~~G~v~~v~i~~~~~~g~~~g~afVeF~~ 74 (423)
.+.|-|+|. -.+.++|++.| +.|.++. |+...+. .-..|+|.|+|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecC
No 414
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=22.15 E-value=1.8e+02 Score=21.47 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhhCCCeeEE----EEeeCCCCCCCcceEEEEeCCHHHHHH
Q 014513 126 PDVTDYLLQETFRSQYPSVRGA----KVVTDPNTGRSKGYGFVKFLDENERNR 174 (423)
Q Consensus 126 ~~~t~~~l~~~F~~~~g~v~~v----~i~~~~~tg~~~G~afV~f~~~~~a~~ 174 (423)
...+..+|++.+.+.|+.-.++ .+.+..-.|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5678899999997777653322 33333334566677655 666665543
No 415
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.52 E-value=2e+02 Score=21.33 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEe----eCCCCCCCcceEEEEeCCHHHHHHH
Q 014513 126 PDVTDYLLQETFRSQYPSVRGAKVV----TDPNTGRSKGYGFVKFLDENERNRA 175 (423)
Q Consensus 126 ~~~t~~~l~~~F~~~~g~v~~v~i~----~~~~tg~~~G~afV~f~~~~~a~~a 175 (423)
...+..+|++.+.+.|+.-.++.++ +..-.|++.|||.| |.|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4678899999998888763333222 33323566777755 6677666543
No 416
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.28 E-value=90 Score=23.20 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred CeEEEEEeCC-CcEEEEEeCChHHHHHHHHHhCC
Q 014513 259 EIVNVKIPMG-RGCGFVQFAARASAEEAILRMQG 291 (423)
Q Consensus 259 ~I~~v~i~~~-~g~aFV~F~~~~~A~~Al~~l~g 291 (423)
.|.++..+.+ +||-||+=.+..+...|+..+.+
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 5788887765 99999999999999999887753
Done!