Query 014514
Match_columns 423
No_of_seqs 193 out of 1862
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02235 ATP citrate (pro-S)-l 100.0 8.8E-98 2E-102 752.8 42.8 417 1-421 1-421 (423)
2 COG0045 SucC Succinyl-CoA synt 100.0 1.6E-89 3.5E-94 676.1 39.1 374 4-421 1-386 (387)
3 PLN00124 succinyl-CoA ligase [ 100.0 7.9E-85 1.7E-89 666.4 40.1 375 2-420 26-421 (422)
4 PRK14046 malate--CoA ligase su 100.0 7.9E-80 1.7E-84 628.2 41.6 376 4-422 1-388 (392)
5 TIGR01016 sucCoAbeta succinyl- 100.0 6.4E-74 1.4E-78 585.9 40.0 371 4-419 1-385 (386)
6 PRK00696 sucC succinyl-CoA syn 100.0 5.8E-70 1.2E-74 557.1 41.3 372 4-420 1-386 (388)
7 KOG1447 GTP-specific succinyl- 100.0 7.1E-69 1.5E-73 503.0 28.7 371 4-417 20-409 (412)
8 KOG2799 Succinyl-CoA synthetas 100.0 3.3E-64 7.1E-69 487.0 14.6 376 4-422 23-424 (434)
9 PF08442 ATP-grasp_2: ATP-gras 100.0 5.3E-43 1.2E-47 326.6 17.2 191 5-204 1-202 (202)
10 PF13549 ATP-grasp_5: ATP-gras 100.0 1.1E-38 2.3E-43 301.9 11.1 204 3-218 7-222 (222)
11 KOG1254 ATP-citrate lyase [Ene 99.9 9.2E-29 2E-33 248.1 0.7 413 2-416 1-490 (600)
12 COG1042 Acyl-CoA synthetase (N 99.7 4.1E-18 8.9E-23 181.4 5.9 374 2-420 20-449 (598)
13 PF00549 Ligase_CoA: CoA-ligas 99.7 2.6E-17 5.6E-22 147.1 9.2 122 275-416 1-151 (153)
14 TIGR02717 AcCoA-syn-alpha acet 99.6 7.1E-15 1.5E-19 153.4 16.2 128 269-420 295-445 (447)
15 COG1042 Acyl-CoA synthetase (N 99.3 1.2E-12 2.6E-17 139.8 3.5 122 3-150 468-591 (598)
16 PF01071 GARS_A: Phosphoribosy 98.9 1.6E-08 3.5E-13 93.9 11.0 99 10-127 5-104 (194)
17 TIGR00514 accC acetyl-CoA carb 98.6 8.6E-07 1.9E-11 92.8 16.2 109 7-133 115-225 (449)
18 COG0151 PurD Phosphoribosylami 98.6 2.7E-07 5.8E-12 93.8 9.9 99 10-127 106-204 (428)
19 PRK08654 pyruvate carboxylase 98.4 9.6E-06 2.1E-10 86.2 17.3 109 7-133 115-225 (499)
20 PRK05586 biotin carboxylase; V 98.4 1E-05 2.2E-10 84.8 16.9 108 8-133 116-225 (447)
21 PRK01372 ddl D-alanine--D-alan 98.4 3E-05 6.4E-10 76.7 18.9 101 7-132 98-198 (304)
22 PRK09288 purT phosphoribosylgl 98.4 2.2E-05 4.8E-10 80.5 18.4 103 10-132 116-219 (395)
23 PRK13789 phosphoribosylamine-- 98.4 2.8E-06 6E-11 88.6 11.7 101 7-126 108-208 (426)
24 PF02786 CPSase_L_D2: Carbamoy 98.4 6.9E-06 1.5E-10 77.7 13.3 107 9-133 3-111 (211)
25 PLN02257 phosphoribosylamine-- 98.4 3.5E-06 7.5E-11 88.0 12.3 101 7-126 102-202 (434)
26 TIGR01142 purT phosphoribosylg 98.4 1.8E-05 3.9E-10 80.7 17.3 100 10-129 103-203 (380)
27 PRK00885 phosphoribosylamine-- 98.3 4.8E-06 1E-10 86.4 12.1 101 7-126 102-202 (420)
28 PRK07178 pyruvate carboxylase 98.3 1.6E-05 3.4E-10 84.0 16.1 107 8-132 115-223 (472)
29 PRK13790 phosphoribosylamine-- 98.3 3.3E-06 7.1E-11 86.7 10.5 97 7-126 67-163 (379)
30 TIGR02712 urea_carbox urea car 98.3 1.3E-05 2.9E-10 92.9 16.6 109 7-133 114-223 (1201)
31 PRK08462 biotin carboxylase; V 98.3 2.1E-05 4.5E-10 82.3 16.6 108 8-133 118-227 (445)
32 TIGR01161 purK phosphoribosyla 98.3 4.7E-05 1E-09 77.1 18.6 100 7-132 98-198 (352)
33 PRK12833 acetyl-CoA carboxylas 98.3 2.2E-05 4.7E-10 82.8 16.4 103 7-127 118-222 (467)
34 PRK08591 acetyl-CoA carboxylas 98.2 6.2E-05 1.3E-09 78.8 18.7 108 8-133 116-225 (451)
35 PRK06111 acetyl-CoA carboxylas 98.2 3.2E-05 7E-10 80.8 16.5 108 7-132 115-224 (450)
36 PRK06019 phosphoribosylaminoim 98.2 7.2E-05 1.6E-09 76.5 18.4 99 9-133 102-201 (372)
37 TIGR00877 purD phosphoribosyla 98.2 1.1E-05 2.3E-10 83.8 11.7 100 7-126 104-204 (423)
38 PRK08463 acetyl-CoA carboxylas 98.2 6.9E-05 1.5E-09 79.3 17.6 110 8-133 115-225 (478)
39 PLN02948 phosphoribosylaminoim 98.2 9.9E-05 2.1E-09 79.8 18.8 101 8-132 122-223 (577)
40 PRK14569 D-alanyl-alanine synt 98.2 5.7E-05 1.2E-09 74.9 15.3 92 6-126 97-188 (296)
41 PRK06524 biotin carboxylase-li 98.1 0.00011 2.4E-09 77.3 17.2 101 6-130 141-243 (493)
42 PRK12815 carB carbamoyl phosph 98.1 1.7E-05 3.7E-10 91.4 11.8 101 10-132 131-231 (1068)
43 PF13535 ATP-grasp_4: ATP-gras 98.1 2.7E-05 5.9E-10 70.4 10.4 101 9-131 6-106 (184)
44 TIGR01369 CPSaseII_lrg carbamo 98.0 0.00011 2.3E-09 84.8 16.3 95 10-126 672-766 (1050)
45 PRK12999 pyruvate carboxylase; 98.0 0.00016 3.4E-09 83.8 16.6 107 8-132 120-228 (1146)
46 PRK14573 bifunctional D-alanyl 98.0 0.00019 4.2E-09 80.6 16.6 101 6-128 567-672 (809)
47 PLN02735 carbamoyl-phosphate s 98.0 5.9E-05 1.3E-09 87.1 12.4 102 9-131 146-247 (1102)
48 COG0439 AccC Biotin carboxylas 97.9 0.00036 7.8E-09 72.9 17.0 109 9-133 117-225 (449)
49 TIGR01369 CPSaseII_lrg carbamo 97.9 5.5E-05 1.2E-09 87.2 11.9 102 9-132 129-230 (1050)
50 TIGR01235 pyruv_carbox pyruvat 97.9 0.00026 5.7E-09 81.8 16.6 108 7-132 115-224 (1143)
51 PLN02735 carbamoyl-phosphate s 97.9 7.6E-05 1.7E-09 86.2 12.0 102 9-132 704-805 (1102)
52 TIGR01205 D_ala_D_alaTIGR D-al 97.9 0.0011 2.3E-08 65.8 18.9 97 7-126 105-205 (315)
53 PRK05294 carB carbamoyl phosph 97.9 7.8E-05 1.7E-09 86.1 11.9 102 9-132 130-231 (1066)
54 PF02222 ATP-grasp: ATP-grasp 97.8 6.4E-05 1.4E-09 68.9 8.1 89 24-133 5-94 (172)
55 KOG0237 Glycinamide ribonucleo 97.8 7.4E-05 1.6E-09 78.4 9.3 100 9-126 110-209 (788)
56 PRK06395 phosphoribosylamine-- 97.8 0.00017 3.7E-09 75.4 11.3 95 8-127 106-205 (435)
57 TIGR02068 cya_phycin_syn cyano 97.8 9.6E-05 2.1E-09 83.6 10.1 90 8-122 214-304 (864)
58 PRK14016 cyanophycin synthetas 97.8 9.4E-05 2E-09 82.1 9.8 91 8-123 215-306 (727)
59 PRK05784 phosphoribosylamine-- 97.8 0.00015 3.2E-09 76.9 10.8 101 7-126 109-219 (486)
60 PF07478 Dala_Dala_lig_C: D-al 97.8 0.00027 5.8E-09 66.5 11.4 90 14-126 1-92 (203)
61 PRK07206 hypothetical protein; 97.7 0.00025 5.4E-09 73.3 11.6 98 9-124 110-210 (416)
62 PRK12815 carB carbamoyl phosph 97.7 0.00096 2.1E-08 77.2 16.7 92 10-126 673-764 (1068)
63 PRK01966 ddl D-alanyl-alanine 97.7 0.00033 7.3E-09 70.6 10.9 96 6-124 122-219 (333)
64 PRK02186 argininosuccinate lya 97.6 0.00033 7.2E-09 79.5 12.0 95 9-127 109-203 (887)
65 PRK12767 carbamoyl phosphate s 97.6 0.00043 9.4E-09 68.9 11.5 91 10-129 114-206 (326)
66 COG0458 CarB Carbamoylphosphat 97.6 0.00036 7.8E-09 71.1 10.6 107 12-138 117-224 (400)
67 TIGR01435 glu_cys_lig_rel glut 97.6 0.00024 5.2E-09 78.3 10.0 92 9-124 477-571 (737)
68 PRK10446 ribosomal protein S6 97.6 0.0005 1.1E-08 68.2 10.7 95 7-124 99-195 (300)
69 PRK14572 D-alanyl-alanine synt 97.6 0.00049 1.1E-08 69.8 10.8 96 6-124 129-228 (347)
70 PRK02471 bifunctional glutamat 97.5 0.00036 7.8E-09 77.6 10.1 91 8-122 489-582 (752)
71 PRK05294 carB carbamoyl phosph 97.5 0.00055 1.2E-08 79.2 11.6 95 10-126 672-766 (1066)
72 PRK14568 vanB D-alanine--D-lac 97.4 0.001 2.2E-08 67.4 11.1 93 7-126 132-224 (343)
73 PRK13278 purP 5-formaminoimida 97.4 0.0011 2.3E-08 67.6 11.1 95 10-133 126-221 (358)
74 COG0027 PurT Formate-dependent 97.4 0.00044 9.5E-09 68.1 7.3 84 27-123 127-210 (394)
75 PRK14570 D-alanyl-alanine synt 97.4 0.001 2.2E-08 68.0 10.4 97 6-125 128-229 (364)
76 PF08443 RimK: RimK-like ATP-g 97.3 0.00056 1.2E-08 63.3 7.1 90 10-122 6-97 (190)
77 TIGR02144 LysX_arch Lysine bio 97.3 0.0016 3.5E-08 63.4 10.5 93 10-122 90-183 (280)
78 PRK14571 D-alanyl-alanine synt 97.3 0.0018 4E-08 64.0 10.6 90 9-128 97-186 (299)
79 PLN02522 ATP citrate (pro-S)-l 97.3 0.0033 7.2E-08 68.0 13.2 122 269-418 167-313 (608)
80 TIGR00768 rimK_fam alpha-L-glu 97.1 0.0035 7.6E-08 60.6 10.7 85 9-114 90-174 (277)
81 PF13607 Succ_CoA_lig: Succiny 97.0 0.0078 1.7E-07 53.2 11.0 120 270-414 2-134 (138)
82 COG4770 Acetyl/propionyl-CoA c 97.0 0.027 6E-07 59.6 16.2 109 9-133 117-225 (645)
83 PTZ00187 succinyl-CoA syntheta 97.0 0.013 2.7E-07 58.8 13.3 128 268-419 168-313 (317)
84 PRK06091 membrane protein FdrA 97.0 0.0073 1.6E-07 64.4 11.8 119 269-420 193-317 (555)
85 COG0026 PurK Phosphoribosylami 97.0 0.0047 1E-07 62.5 9.9 97 11-132 103-200 (375)
86 TIGR03103 trio_acet_GNAT GNAT- 96.9 0.0051 1.1E-07 66.3 9.8 90 8-123 298-388 (547)
87 KOG0369 Pyruvate carboxylase [ 96.7 0.17 3.7E-06 54.7 19.0 258 40-374 173-459 (1176)
88 KOG0238 3-Methylcrotonyl-CoA c 96.6 0.076 1.7E-06 55.7 15.8 109 9-133 113-221 (670)
89 PRK13277 5-formaminoimidazole- 96.6 0.018 3.9E-07 58.5 11.3 94 13-133 132-228 (366)
90 COG0189 RimK Glutathione synth 96.5 0.0075 1.6E-07 60.6 7.8 92 11-124 123-215 (318)
91 TIGR02717 AcCoA-syn-alpha acet 96.5 0.039 8.4E-07 58.1 13.3 126 269-419 150-288 (447)
92 COG0074 SucD Succinyl-CoA synt 96.4 0.063 1.4E-06 52.6 13.0 128 264-419 140-289 (293)
93 PLN00125 Succinyl-CoA ligase [ 96.3 0.068 1.5E-06 53.3 13.1 125 269-418 150-293 (300)
94 TIGR01019 sucCoAalpha succinyl 96.3 0.064 1.4E-06 53.2 12.6 125 269-418 143-285 (286)
95 PRK05678 succinyl-CoA syntheta 95.7 0.14 3.1E-06 50.8 11.9 126 269-419 145-288 (291)
96 COG1038 PycA Pyruvate carboxyl 95.2 0.44 9.6E-06 52.7 14.4 140 40-204 147-300 (1149)
97 PRK06849 hypothetical protein; 95.2 0.12 2.5E-06 53.1 10.0 94 9-130 118-211 (389)
98 PLN02941 inositol-tetrakisphos 94.8 0.16 3.6E-06 51.2 9.3 79 11-115 111-197 (328)
99 COG1181 DdlA D-alanine-D-alani 94.4 0.6 1.3E-05 47.0 12.2 97 7-126 103-201 (317)
100 KOG0368 Acetyl-CoA carboxylase 92.4 0.99 2.2E-05 52.9 11.0 130 41-204 229-378 (2196)
101 TIGR02291 rimK_rel_E_lig alpha 92.3 2.9 6.2E-05 42.1 13.2 53 10-75 40-94 (317)
102 TIGR00640 acid_CoA_mut_C methy 92.2 2.1 4.6E-05 37.4 10.7 95 302-420 34-128 (132)
103 PF15632 ATPgrasp_Ter: ATP-gra 92.1 0.93 2E-05 45.8 9.5 93 24-130 119-223 (329)
104 COG1759 5-formaminoimidazole-4 91.9 0.82 1.8E-05 45.6 8.6 95 12-133 129-224 (361)
105 COG3919 Predicted ATP-grasp en 89.8 1.1 2.3E-05 44.5 7.1 94 24-133 126-223 (415)
106 KOG1255 Succinyl-CoA synthetas 89.5 0.7 1.5E-05 44.4 5.5 104 265-385 172-278 (329)
107 PRK12458 glutathione synthetas 88.5 2.3 5.1E-05 43.0 9.0 69 28-113 140-210 (338)
108 cd02071 MM_CoA_mut_B12_BD meth 87.2 6.8 0.00015 33.4 9.9 91 300-414 29-119 (122)
109 PF02601 Exonuc_VII_L: Exonucl 86.9 7.6 0.00016 38.8 11.4 125 269-420 14-146 (319)
110 PRK02261 methylaspartate mutas 86.1 12 0.00027 32.8 11.0 98 300-421 33-136 (137)
111 PF02655 ATP-grasp_3: ATP-gras 86.1 1.4 3.1E-05 39.5 5.2 54 53-127 32-85 (161)
112 PRK06091 membrane protein FdrA 86.0 6.4 0.00014 42.5 10.8 105 299-420 373-494 (555)
113 cd07014 S49_SppA Signal peptid 84.9 5.5 0.00012 36.2 8.6 73 303-389 17-91 (177)
114 cd00578 L-fuc_L-ara-isomerases 84.1 19 0.00041 37.9 13.3 116 271-407 2-138 (452)
115 PRK10949 protease 4; Provision 83.3 3.7 8E-05 45.1 7.8 61 306-380 345-407 (618)
116 COG0616 SppA Periplasmic serin 81.0 6 0.00013 39.8 7.8 59 307-380 79-139 (317)
117 COG0329 DapA Dihydrodipicolina 80.8 16 0.00034 36.4 10.6 103 306-421 20-128 (299)
118 TIGR00705 SppA_67K signal pept 79.4 5.9 0.00013 43.2 7.7 62 307-382 328-391 (584)
119 cd07019 S49_SppA_1 Signal pept 78.9 10 0.00023 35.5 8.3 70 305-386 18-87 (211)
120 PLN02417 dihydrodipicolinate s 78.5 23 0.0005 34.8 10.9 107 300-420 11-124 (280)
121 COG0075 Serine-pyruvate aminot 78.4 12 0.00026 38.7 9.1 84 263-362 74-161 (383)
122 TIGR01380 glut_syn glutathione 78.4 8 0.00017 38.6 7.7 75 28-119 133-210 (312)
123 TIGR02313 HpaI-NOT-DapA 2,4-di 78.2 25 0.00053 34.8 11.1 108 300-421 10-124 (294)
124 PRK04147 N-acetylneuraminate l 77.9 24 0.00053 34.8 10.9 108 300-421 13-128 (293)
125 cd02072 Glm_B12_BD B12 binding 77.0 42 0.00091 29.3 10.8 91 300-414 29-125 (128)
126 cd00952 CHBPH_aldolase Trans-o 76.2 27 0.00058 34.9 10.8 102 305-421 23-132 (309)
127 TIGR00683 nanA N-acetylneurami 75.3 32 0.0007 34.0 11.0 109 300-421 10-125 (290)
128 TIGR00237 xseA exodeoxyribonuc 75.1 28 0.0006 36.6 10.9 121 269-417 129-255 (432)
129 PRK05246 glutathione synthetas 73.7 12 0.00026 37.4 7.5 75 28-119 134-211 (316)
130 cd07018 S49_SppA_67K_type Sign 71.4 16 0.00034 34.6 7.5 60 305-378 26-87 (222)
131 PRK03620 5-dehydro-4-deoxygluc 70.7 47 0.001 33.0 11.0 108 300-421 17-130 (303)
132 TIGR00674 dapA dihydrodipicoli 70.4 50 0.0011 32.3 11.0 108 300-421 8-122 (285)
133 PRK03170 dihydrodipicolinate s 70.4 46 0.001 32.7 10.8 109 300-421 11-125 (292)
134 cd07023 S49_Sppa_N_C Signal pe 70.2 29 0.00062 32.3 8.8 66 306-385 15-82 (208)
135 TIGR01501 MthylAspMutase methy 69.2 80 0.0017 27.7 10.8 94 300-417 31-130 (134)
136 COG2185 Sbm Methylmalonyl-CoA 68.9 85 0.0019 27.9 11.3 96 302-421 44-139 (143)
137 cd00408 DHDPS-like Dihydrodipi 68.3 60 0.0013 31.5 11.0 106 301-421 8-121 (281)
138 cd00394 Clp_protease_like Case 68.0 37 0.00081 29.9 8.8 59 309-384 12-72 (161)
139 TIGR00706 SppA_dom signal pept 66.9 29 0.00062 32.5 8.1 62 308-384 13-76 (207)
140 cd00950 DHDPS Dihydrodipicolin 65.2 68 0.0015 31.2 10.8 108 300-420 10-123 (284)
141 TIGR03249 KdgD 5-dehydro-4-deo 61.9 85 0.0018 31.0 10.8 106 300-420 15-127 (296)
142 cd02067 B12-binding B12 bindin 60.4 99 0.0021 25.7 10.2 98 285-414 19-116 (119)
143 KOG0370 Multifunctional pyrimi 60.4 2.8 6.1E-05 47.4 -0.1 89 26-131 510-598 (1435)
144 PF00701 DHDPS: Dihydrodipicol 60.0 88 0.0019 30.6 10.5 109 300-420 11-124 (289)
145 cd07022 S49_Sppa_36K_type Sign 59.8 73 0.0016 29.8 9.5 65 305-384 22-88 (214)
146 cd00954 NAL N-Acetylneuraminic 59.8 1E+02 0.0022 30.3 10.8 109 300-421 10-125 (288)
147 PRK00286 xseA exodeoxyribonucl 59.7 81 0.0018 33.0 10.7 121 269-418 135-261 (438)
148 cd00951 KDGDH 5-dehydro-4-deox 57.4 1.1E+02 0.0025 30.0 10.8 106 300-420 10-122 (289)
149 cd07021 Clp_protease_NfeD_like 57.2 44 0.00095 30.7 7.3 64 303-384 5-73 (178)
150 COG0541 Ffh Signal recognition 56.5 76 0.0016 33.4 9.5 63 353-422 119-181 (451)
151 PRK14194 bifunctional 5,10-met 55.3 1.6E+02 0.0035 29.5 11.4 98 302-414 68-202 (301)
152 PRK14188 bifunctional 5,10-met 55.2 1.5E+02 0.0033 29.6 11.2 97 302-413 67-200 (296)
153 PRK12419 riboflavin synthase s 52.3 1.8E+02 0.004 26.3 12.9 112 285-420 32-149 (158)
154 KOG0370 Multifunctional pyrimi 52.0 70 0.0015 36.9 8.8 82 13-119 1039-1123(1435)
155 COG5012 Predicted cobalamin bi 51.1 83 0.0018 30.1 8.1 92 300-419 134-225 (227)
156 PRK11778 putative inner membra 49.0 35 0.00076 34.6 5.6 41 331-381 124-166 (330)
157 COG0299 PurN Folate-dependent 48.0 1.1E+02 0.0024 28.7 8.3 59 333-407 3-61 (200)
158 PF02955 GSH-S_ATP: Prokaryoti 44.4 31 0.00068 31.6 4.1 65 31-112 14-79 (173)
159 PF00885 DMRL_synthase: 6,7-di 44.2 1.4E+02 0.003 26.5 8.0 109 285-420 25-139 (144)
160 cd07020 Clp_protease_NfeD_1 No 43.2 1E+02 0.0022 28.3 7.3 61 310-388 15-80 (187)
161 TIGR00736 nifR3_rel_arch TIM-b 42.8 2.4E+02 0.0053 27.0 10.1 34 383-416 177-211 (231)
162 COG0436 Aspartate/tyrosine/aro 42.3 88 0.0019 32.3 7.6 78 270-361 89-195 (393)
163 PF00448 SRP54: SRP54-type pro 42.1 1.7E+02 0.0037 27.0 8.8 77 333-420 4-80 (196)
164 cd07016 S14_ClpP_1 Caseinolyti 40.1 92 0.002 27.5 6.4 64 308-389 15-78 (160)
165 COG2185 Sbm Methylmalonyl-CoA 39.2 45 0.00098 29.7 4.1 47 372-418 16-62 (143)
166 PF02782 FGGY_C: FGGY family o 38.8 1.9E+02 0.0041 26.0 8.5 85 327-416 104-192 (198)
167 PF13433 Peripla_BP_5: Peripla 35.6 98 0.0021 31.9 6.4 67 281-361 23-91 (363)
168 COG0054 RibH Riboflavin syntha 35.2 3.4E+02 0.0073 24.5 11.9 110 285-421 34-149 (152)
169 PRK00061 ribH 6,7-dimethyl-8-r 34.6 3.4E+02 0.0074 24.3 13.4 115 282-421 31-149 (154)
170 cd07013 S14_ClpP Caseinolytic 33.4 1.3E+02 0.0027 27.0 6.2 60 308-384 12-73 (162)
171 COG3693 XynA Beta-1,4-xylanase 33.0 2.5E+02 0.0055 28.5 8.7 100 297-403 157-257 (345)
172 PRK00994 F420-dependent methyl 32.5 4.2E+02 0.0092 25.8 9.6 37 308-348 43-79 (277)
173 PF05770 Ins134_P3_kin: Inosit 32.2 1E+02 0.0022 31.0 5.8 72 26-117 112-185 (307)
174 PF14403 CP_ATPgrasp_2: Circul 31.6 2.2E+02 0.0047 30.2 8.4 51 53-119 339-391 (445)
175 PRK09570 rpoH DNA-directed RNA 31.5 66 0.0014 25.7 3.5 29 5-38 17-45 (79)
176 PF11379 DUF3182: Protein of u 31.4 1.2E+02 0.0026 30.9 6.1 79 31-122 116-195 (355)
177 cd06311 PBP1_ABC_sugar_binding 31.2 2.2E+02 0.0048 26.7 7.9 64 308-390 167-230 (274)
178 PRK10949 protease 4; Provision 31.1 99 0.0022 34.1 6.0 50 311-375 98-151 (618)
179 TIGR00705 SppA_67K signal pept 30.9 1.7E+02 0.0037 32.1 7.8 56 308-378 76-135 (584)
180 PF14397 ATPgrasp_ST: Sugar-tr 30.3 79 0.0017 31.2 4.7 31 41-75 62-92 (285)
181 COG2012 RPB5 DNA-directed RNA 30.1 69 0.0015 25.5 3.3 29 5-38 20-48 (80)
182 TIGR00640 acid_CoA_mut_C methy 29.9 1.6E+02 0.0034 25.6 6.0 42 376-417 10-51 (132)
183 PF01191 RNA_pol_Rpb5_C: RNA p 29.8 38 0.00082 26.7 1.9 29 5-38 14-42 (74)
184 cd07015 Clp_protease_NfeD Nodu 29.6 2.3E+02 0.0049 25.9 7.3 44 328-384 28-76 (172)
185 cd02070 corrinoid_protein_B12- 29.0 3.5E+02 0.0076 24.9 8.7 99 284-415 101-199 (201)
186 COG1090 Predicted nucleoside-d 28.8 1E+02 0.0022 30.7 5.1 132 270-417 158-295 (297)
187 TIGR01501 MthylAspMutase methy 28.4 1.5E+02 0.0033 26.0 5.6 47 372-418 5-51 (134)
188 COG1992 Uncharacterized conser 27.9 3.2E+02 0.007 25.3 7.8 21 399-421 159-179 (181)
189 PLN02591 tryptophan synthase 27.8 5.7E+02 0.012 24.8 10.1 29 304-337 9-37 (250)
190 PLN02331 phosphoribosylglycina 27.5 2.4E+02 0.0052 26.6 7.2 44 352-404 14-57 (207)
191 PF13407 Peripla_BP_4: Peripla 27.3 4.5E+02 0.0098 24.2 9.3 90 305-421 162-251 (257)
192 cd06300 PBP1_ABC_sugar_binding 27.2 3.7E+02 0.0081 25.0 8.7 55 306-379 165-219 (272)
193 cd02810 DHOD_DHPD_FMN Dihydroo 27.1 3.7E+02 0.0079 26.1 8.8 82 302-400 103-193 (289)
194 TIGR01101 V_ATP_synt_F vacuola 27.0 3.2E+02 0.0069 23.4 7.2 60 299-378 34-93 (115)
195 cd02069 methionine_synthase_B1 26.4 5.5E+02 0.012 24.1 9.9 106 283-418 106-212 (213)
196 PTZ00294 glycerol kinase-like 26.0 3.4E+02 0.0074 28.8 9.0 74 327-403 361-438 (504)
197 TIGR00315 cdhB CO dehydrogenas 25.8 72 0.0016 29.0 3.2 34 369-402 28-61 (162)
198 COG3473 Maleate cis-trans isom 25.8 2.6E+02 0.0055 26.8 6.9 66 302-392 158-223 (238)
199 cd02072 Glm_B12_BD B12 binding 25.6 1.9E+02 0.0041 25.2 5.7 47 372-418 3-49 (128)
200 PRK02261 methylaspartate mutas 25.2 2.1E+02 0.0045 25.0 6.0 47 372-418 7-53 (137)
201 PRK03369 murD UDP-N-acetylmura 25.2 4.6E+02 0.01 27.8 9.8 95 301-421 330-453 (488)
202 cd02067 B12-binding B12 bindin 25.1 1.9E+02 0.004 24.0 5.5 44 373-416 4-47 (119)
203 COG3962 Acetolactate synthase 25.0 77 0.0017 33.7 3.6 33 368-400 229-261 (617)
204 TIGR02990 ectoine_eutA ectoine 25.0 2.2E+02 0.0048 27.4 6.6 67 305-399 162-228 (239)
205 cd00953 KDG_aldolase KDG (2-ke 24.7 6.5E+02 0.014 24.5 11.1 102 301-420 11-120 (279)
206 TIGR01425 SRP54_euk signal rec 24.6 4.8E+02 0.01 27.5 9.5 77 333-420 102-179 (429)
207 KOG2862 Alanine-glyoxylate ami 24.5 1.8E+02 0.0039 29.5 5.9 71 263-343 86-159 (385)
208 COG3660 Predicted nucleoside-d 24.4 4.7E+02 0.01 26.0 8.6 122 273-413 73-214 (329)
209 COG1012 PutA NAD-dependent ald 23.8 6.7E+02 0.015 26.6 10.6 91 282-417 176-266 (472)
210 TIGR00959 ffh signal recogniti 23.6 5.3E+02 0.012 27.1 9.6 37 384-420 143-179 (428)
211 PLN02295 glycerol kinase 23.6 3.5E+02 0.0075 28.8 8.5 73 327-402 362-443 (512)
212 PRK09426 methylmalonyl-CoA mut 23.4 6.7E+02 0.014 28.3 10.8 94 302-419 613-707 (714)
213 TIGR02049 gshA_ferroox glutama 23.1 1.9E+02 0.004 30.0 5.8 60 53-118 257-317 (403)
214 cd02070 corrinoid_protein_B12- 23.0 4.3E+02 0.0093 24.3 8.0 47 372-418 86-132 (201)
215 TIGR01315 5C_CHO_kinase FGGY-f 22.9 4.7E+02 0.01 28.1 9.4 73 327-402 396-474 (541)
216 COG4231 Indolepyruvate ferredo 22.8 7.6E+02 0.017 27.4 10.7 34 258-292 234-269 (640)
217 PF03851 UvdE: UV-endonuclease 22.6 6.8E+02 0.015 24.7 9.6 93 298-400 107-207 (275)
218 PRK10867 signal recognition pa 22.4 6.3E+02 0.014 26.6 9.9 72 338-420 108-180 (433)
219 PRK14179 bifunctional 5,10-met 22.3 7.8E+02 0.017 24.4 11.3 104 300-413 65-200 (284)
220 TIGR00877 purD phosphoribosyla 22.1 6.6E+02 0.014 25.7 10.0 20 271-291 2-21 (423)
221 COG1570 XseA Exonuclease VII, 21.9 3.8E+02 0.0081 28.4 8.0 121 269-417 135-261 (440)
222 COG0673 MviM Predicted dehydro 21.5 7.6E+02 0.017 24.0 10.2 122 271-420 5-141 (342)
223 cd04741 DHOD_1A_like Dihydroor 21.3 7.1E+02 0.015 24.5 9.7 61 302-378 96-166 (294)
224 cd07110 ALDH_F10_BADH Arabidop 21.2 8.8E+02 0.019 25.2 10.9 72 282-380 163-234 (456)
225 PLN02291 phospho-2-dehydro-3-d 21.1 4.2E+02 0.0092 28.2 8.1 94 298-420 298-398 (474)
226 COG1433 Uncharacterized conser 20.6 3.4E+02 0.0074 23.4 6.2 30 383-417 77-106 (121)
227 PF03709 OKR_DC_1_N: Orn/Lys/A 20.5 3.7E+02 0.008 22.4 6.4 88 313-421 26-114 (115)
228 cd06558 crotonase-like Crotona 20.3 4E+02 0.0087 23.8 7.2 22 368-389 92-113 (195)
229 PRK13602 putative ribosomal pr 20.2 1.7E+02 0.0037 23.2 4.1 32 372-403 29-60 (82)
230 PLN02467 betaine aldehyde dehy 20.2 9.6E+02 0.021 25.6 11.0 72 282-380 194-265 (503)
231 PF15609 PRTase_2: Phosphoribo 20.1 2E+02 0.0042 27.0 4.9 48 350-401 136-183 (191)
232 TIGR01358 DAHP_synth_II 3-deox 20.1 4.8E+02 0.01 27.6 8.2 94 298-420 278-378 (443)
233 PRK14190 bifunctional 5,10-met 20.1 2.8E+02 0.006 27.6 6.3 35 300-338 65-99 (284)
234 cd07144 ALDH_ALD2-YMR170C Sacc 20.0 8.5E+02 0.018 25.7 10.5 70 284-380 189-258 (484)
No 1
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=8.8e-98 Score=752.76 Aligned_cols=417 Identities=87% Similarity=1.361 Sum_probs=383.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhccCCCCCcCCceEEe-eCCCHHhHHhhccc---cCCCcEEEeeccccCccCCcCeeEEeC
Q 014514 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVT-ESTDFSELTNKEPW---LSSSRLVVKPDMLFGKRGKSGLVALNL 76 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~-~~~~~~ea~~aa~~---lg~~pvVvK~qv~~g~r~k~GGV~l~~ 76 (423)
||+++|+|||||+||++||+|.+||++ |.+.++ +++ +|+.++++. +++.++|||||+++|||||+|||+++.
T Consensus 1 ~~~~~l~EyqaK~ll~~~~~~~~gipv--P~~~v~~~~~--ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~ 76 (423)
T PLN02235 1 MARKKIREYDSKRLLKEHLKRLAGIDL--PIRSAQVTES--TDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNL 76 (423)
T ss_pred CCcccccHHHHHHHHHHhhcccCCCCC--CCCeeccCCH--HHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeC
Confidence 999999999999999999999999555 577777 666 677666654 875567999999999999999999999
Q ss_pred CHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEeccCCccccccccCcEEEEecCccc
Q 014514 77 DLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEK 156 (423)
Q Consensus 77 ~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~~~GGv~vE~~~d~~~~~pi~~~~ 156 (423)
|++|+++++++|+++.+.++++++++++|||||++++.+|+|+|++.||..+.|++|.+|||+||+.++++.+++|+|..
T Consensus 77 s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~ 156 (423)
T PLN02235 77 DLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEA 156 (423)
T ss_pred CHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCC
Confidence 99999999999999998666666799999999999999999999999999777999999999999999999999999999
Q ss_pred CCCHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCCeEEEeeEEEeCCCccccCccccccccCC
Q 014514 157 HMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFP 236 (423)
Q Consensus 157 ~l~~~~~~~ll~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~g~~valDaki~ldd~a~~r~~~~~~~~~~~ 236 (423)
+++.++++.++.+++....+++.+++.+||++|.++|++++|||||++.+|+++|+|||+.+||||.|||+++|..+.+|
T Consensus 157 gl~~~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~ 236 (423)
T PLN02235 157 PLTSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFP 236 (423)
T ss_pred CCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhccc
Confidence 99999999999988877789999999999999999999999999999988899999999999999999999889989999
Q ss_pred CCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHH
Q 014514 237 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY 316 (423)
Q Consensus 237 ~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a 316 (423)
.||+++.+|+|.++.++|+.+..++++++|+|+||||||+||||++|+|||++..+|.+|+||||+|+||+|+.++++++
T Consensus 237 ~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a 316 (423)
T PLN02235 237 LPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY 316 (423)
T ss_pred ccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHH
Confidence 99999999999988888877777655555999999999999999999999999997544999999999999999999999
Q ss_pred HHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccC
Q 014514 317 ARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELG 396 (423)
Q Consensus 317 ~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~g 396 (423)
++++|+|+++||+++++||||||||++|++||+||+||++|++++..++++.++|||+|++|||+++|+++|+++++++|
T Consensus 317 ~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~g 396 (423)
T PLN02235 317 ARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIG 396 (423)
T ss_pred HHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcC
Confidence 99999888889999999999999999999999999999999999875555568999999999999999999997777799
Q ss_pred CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 397 IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 397 ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+|+++|++++||++||+++|+..-+
T Consensus 397 l~i~~~~~~~~m~~a~~~av~~~~~ 421 (423)
T PLN02235 397 VPIEVYGPEATMTGICKQAIDYITA 421 (423)
T ss_pred CcEEEeCCCCCHHHHHHHHHhhhcc
Confidence 9999999999999999999975543
No 2
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-89 Score=676.07 Aligned_cols=374 Identities=25% Similarity=0.374 Sum_probs=341.7
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
|+|||||+|+||++| | ||+|++++++++ +|+.+++.++|+.|+|||+|+++|||||+|||+++.|++|+++
T Consensus 1 M~lhEYqaKelf~~~-----G--iPvp~g~v~~s~--eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~ 71 (387)
T COG0045 1 MNLHEYQAKELFAKY-----G--IPVPPGYVATSP--EEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKE 71 (387)
T ss_pred CcHHHHHHHHHHHHc-----C--CCCCCceeeeCH--HHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHH
Confidence 789999999999999 8 566689999988 9999999999878999999999999999999999999999999
Q ss_pred HHHHHhccchhccCCC-CCceeeEEeeecCC-CceEEEEEEEcCC--CceEEeccCCccccccc----cCcEEEEecCcc
Q 014514 84 FVKGRLGTEVEMGGCK-GPITTFIVEPFVPH-NQEYYLSIVSDRL--GCTISFSECGGIEIEEN----WDKVKTIFLPTE 155 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~-~~v~~vLVe~~v~~-~~Elylgi~~D~~--gp~il~~~~GGv~vE~~----~d~~~~~pi~~~ 155 (423)
++++|+++..++ ++. ..++.+|||+++++ .+|||+|+..||. .|++|.|.+||||||+. |+++++.+++|.
T Consensus 72 ~a~~~lg~~~q~-~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~ 150 (387)
T COG0045 72 AAEEILGKNYQT-DIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPL 150 (387)
T ss_pred HHHHHhCccccc-CcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCc
Confidence 999999976442 333 48999999999995 4599999999998 58899999999999986 468999999999
Q ss_pred cCCCHHHHHHHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-c-CCCeEEEeeEEEeCCCccccCccccc
Q 014514 156 KHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-V-NGEPYPLDMRGELDDTAAFKNFKKWA 231 (423)
Q Consensus 156 ~~l~~~~~~~ll~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~-~g~~valDaki~ldd~a~~r~~~~~~ 231 (423)
.+++++++|++.. |+++...+++.+++.+||++|.++|++++|||||++ . +|.++|+|||+.+||||.||||++ .
T Consensus 151 ~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~-~ 229 (387)
T COG0045 151 TGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDL-A 229 (387)
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcch-h
Confidence 9999999999987 667778899999999999999999999999999999 5 448999999999999999999984 4
Q ss_pred cccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHH
Q 014514 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~ 311 (423)
.+++. .+.++.|. .+.+.+|+||+|+||||||+||+|++|.|||+++.+ ||+||||+|+||+|+.+
T Consensus 230 ~~~d~----~~ed~~e~--------~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~--Gg~PANFLDvGGgA~~e 295 (387)
T COG0045 230 ELRDE----SEEDPREA--------EASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLY--GGKPANFLDVGGGATAE 295 (387)
T ss_pred hhhcc----cccChhHH--------HhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHc--CCCCcceeecCCCCCHH
Confidence 45555 55566554 678889999999999999999999999999999985 99999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhh
Q 014514 312 EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~ 391 (423)
+++++++++++ ||+++++|||+||||++|+.|| +||++|+++.+ .++|+|+|+.|||+++|+++|++
T Consensus 296 ~v~~a~~~il~----d~~vk~IfVNIfGGI~rcD~vA---~GIi~Al~e~~-----~~vPlVVRL~GtN~e~Gk~iL~e- 362 (387)
T COG0045 296 RVKEAFKLILS----DPNVKAIFVNIFGGITRCDEVA---EGIIAALKEVG-----VNVPLVVRLEGTNVEEGKRILAE- 362 (387)
T ss_pred HHHHHHHHHhc----CCCccEEEEEEccCcCccHHHH---HHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHHH-
Confidence 99999999999 9999999999999999999999 99999999985 58999999999999999999999
Q ss_pred ccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 392 GEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 392 ~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+|+++.+| ++|++|++.++++++.
T Consensus 363 ---sg~~i~~~---~~l~~aa~k~v~~~~~ 386 (387)
T COG0045 363 ---SGLNIIAA---DDLDEAAEKAVELAKG 386 (387)
T ss_pred ---cCCceEec---ccHHHHHHHHHHHhhc
Confidence 99777755 7999999999999875
No 3
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=7.9e-85 Score=666.39 Aligned_cols=375 Identities=22% Similarity=0.330 Sum_probs=338.3
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccC--CCcEEEeeccccCccCCc-------Cee
Q 014514 2 ARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLS--SSRLVVKPDMLFGKRGKS-------GLV 72 (423)
Q Consensus 2 ~~~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg--~~pvVvK~qv~~g~r~k~-------GGV 72 (423)
-+|+|+|||+|+||++| | ||+|++.+++++ +|+.+++.+++ ++|||+|+|+++|||||+ |||
T Consensus 26 ~~m~l~EyqaK~LL~~~-----G--Ipvp~~~va~t~--eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV 96 (422)
T PLN00124 26 RRLNIHEYQGAELMSKY-----G--VNVPKGAAASSL--DEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGV 96 (422)
T ss_pred cccCCCHHHHHHHHHHc-----C--CCCCCceeeCCH--HHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeE
Confidence 46899999999999999 8 566689898887 89999998885 589999999999999966 999
Q ss_pred EEeCCHHHHHHHHHHHhccchhc--cCCC-CCceeeEEeeecCCCceEEEEEEEcCC--CceEEeccCCccccc----cc
Q 014514 73 ALNLDLAQVAEFVKGRLGTEVEM--GGCK-GPITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIE----EN 143 (423)
Q Consensus 73 ~l~~~~ee~~~a~~~~~~~~~~~--~~~~-~~v~~vLVe~~v~~~~Elylgi~~D~~--gp~il~~~~GGv~vE----~~ 143 (423)
+++.+ +|+.+++++|+++++.+ +++. ..++++||+|++.+++|+|+|++.||. +|+|++|++||++|| ..
T Consensus 97 ~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~ 175 (422)
T PLN00124 97 HIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKF 175 (422)
T ss_pred EECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhC
Confidence 99966 99999999999986532 2333 388999988888889999999999994 899988889999999 46
Q ss_pred cCcEEEEecCcccCCCHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCC
Q 014514 144 WDKVKTIFLPTEKHMTLDACAPLIATLP--LEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDD 220 (423)
Q Consensus 144 ~d~~~~~pi~~~~~l~~~~~~~ll~g~~--~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd 220 (423)
+|.+.+++++|..+++.+++++++.+++ +.+++++.+++.+||++|.++|++++|||||++ .+|+++|+|||+.+||
T Consensus 176 pd~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~Dd 255 (422)
T PLN00124 176 PEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDD 255 (422)
T ss_pred chheeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCC
Confidence 7889999999999999999999998764 478999999999999999999999999999999 7778999999999999
Q ss_pred CccccCccccccccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCc
Q 014514 221 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300 (423)
Q Consensus 221 ~a~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN 300 (423)
||.||||++|. ++++ ++.+|.|. +++..+++||+|+|+||||+||||++|+|||+|..+ ||+|||
T Consensus 256 nA~~R~~~~~~-~~~~----~~~~~~E~--------~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~--Gg~pAN 320 (422)
T PLN00124 256 NAAFRQKEIFA-LRDT----SQEDPREV--------AAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLH--GGSPAN 320 (422)
T ss_pred chhhcChhhhh-ccCc----ccCChhHH--------HHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHc--CCCcce
Confidence 99999999875 5555 44555544 578889999999999999999999999999999995 999999
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|+|+||+|+.++++++++++++ ||++++|||||||||++|+.|| +||++|+++.. .++|||+|+.|||
T Consensus 321 FlD~GG~a~~~~v~~a~~ii~~----d~~vk~iliNIfGGI~~cd~iA---~gii~a~~~~~-----~~~pivvRl~Gtn 388 (422)
T PLN00124 321 FLDVGGNASEQQVVEAFKILTS----DDKVKAILVNIFGGIMKCDVIA---SGIVNAAKQVG-----LKVPLVVRLEGTN 388 (422)
T ss_pred eeecCCCCCHHHHHHHHHHHhc----CCCCcEEEEEecCCccchHHHH---HHHHHHHHhcC-----CCCcEEEEcCCCC
Confidence 9999999999999999999998 9999999999999999999999 99999999875 4799999999999
Q ss_pred HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 381 YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+++|+++|++ +|++++.+ ++++||++++|+++.
T Consensus 389 ~~~g~~~l~~----~~~~~~~~---~~l~~A~~~~v~~~~ 421 (422)
T PLN00124 389 VDQGKRILKE----SGMTLITA---EDLDDAAEKAVKALA 421 (422)
T ss_pred HHHHHHHHHh----CCCCeEEc---CCHHHHHHHHHHHhc
Confidence 9999999998 99988754 899999999998864
No 4
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=7.9e-80 Score=628.25 Aligned_cols=376 Identities=24% Similarity=0.354 Sum_probs=340.8
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
|+|+|||+|+||++| | ||++++.+++++ +|+.+++..+|..|||||+|++.+||||+|||+++.|++|+++
T Consensus 1 m~l~E~eak~lL~~y-----G--Ipvp~~~~~~~~--~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~ 71 (392)
T PRK14046 1 MDIHEYQAKELLASF-----G--VAVPRGALAYSP--EQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRD 71 (392)
T ss_pred CCCcHHHHHHHHHHc-----C--CCCCCceEECCH--HHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHH
Confidence 789999999999999 8 566689999887 8999999999743679999999999999999999999999999
Q ss_pred HHHHHhccchhc--cCCC-CCceeeEEeeecCCCceEEEEEEEcCC-CceEEe-ccCCccccccc----cCcEEEEecCc
Q 014514 84 FVKGRLGTEVEM--GGCK-GPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISF-SECGGIEIEEN----WDKVKTIFLPT 154 (423)
Q Consensus 84 a~~~~~~~~~~~--~~~~-~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~-~~~GGv~vE~~----~d~~~~~pi~~ 154 (423)
++++|+++.+.+ +++. ..+++||||+|+++++|+|+|+++||. ||++++ |+.||++||++ ||++.+++|+|
T Consensus 72 a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~ 151 (392)
T PRK14046 72 AAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEP 151 (392)
T ss_pred HHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcCC
Confidence 999999986422 3334 489999999999999999999999999 888766 57999999986 68999999999
Q ss_pred ccCCCHHHHHHHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCCCccccCccccc
Q 014514 155 EKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWA 231 (423)
Q Consensus 155 ~~~l~~~~~~~ll~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd~a~~r~~~~~~ 231 (423)
..+++.++++++.. |+++...+++.+++.+||++|.++|++++|||||++ .+|+++|+|+|+.+||||.||||++|
T Consensus 152 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~~- 230 (392)
T PRK14046 152 AVGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIA- 230 (392)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhHH-
Confidence 99999999999877 556788899999999999999999999999999999 88999999999999999999999965
Q ss_pred cccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHH
Q 014514 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~ 311 (423)
.++++ .+.+|.|. +++++++|||+|+|+||||+||+|++|+|+|++..+ |++|+||+|+||+++++
T Consensus 231 ~~~~~----~~~~~~e~--------~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~--gg~paNPlDlgg~a~~e 296 (392)
T PRK14046 231 EMRDP----SQEDPREA--------QAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLA--GGEPANFLDVGGGASPE 296 (392)
T ss_pred hhcCc----ccCChhHH--------HHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhc--CCCCcCCEEecCCCCHH
Confidence 46766 55567655 577889999999999999999999999999999985 89999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhh
Q 014514 312 EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~ 391 (423)
+|.++++++++ ||+++++|+|++||+++|+++| ++|++++++.. .++||++|+.|++.++++++|++
T Consensus 297 ~~~~aL~~ll~----Dp~VdaVlv~i~ggi~~~~~vA---~~Ii~a~~~~~-----~~kPvvv~l~G~~~e~~~~iL~~- 363 (392)
T PRK14046 297 RVAKAFRLVLS----DRNVKAILVNIFAGINRCDWVA---EGVVQAAREVG-----IDVPLVVRLAGTNVEEGRKILAE- 363 (392)
T ss_pred HHHHHHHHHHc----CCCCCEEEEEcCCCCCCHHHHH---HHHHHHHHhcC-----CCCcEEEEcCCCCHHHHHHHHHH-
Confidence 99999999998 9999999999999999999998 99999988742 36899999999999999999998
Q ss_pred ccccCCceeecCCCCCHHHHHHHHHHHhHhc
Q 014514 392 GEELGIPLEVYGPEATMTGICKQAIDCIMSA 422 (423)
Q Consensus 392 ~~~~gip~~~~~~~~~~~~av~~~~~~~~~~ 422 (423)
+|+|+|. .+++++|++++|++++++
T Consensus 364 ---~Gipvf~---~~~~~~a~~~~v~~~~~~ 388 (392)
T PRK14046 364 ---SGLPIIT---ADTLAEAAEKAVEAWKGA 388 (392)
T ss_pred ---cCCCeee---cCCHHHHHHHHHHHHhhh
Confidence 9999994 489999999999999886
No 5
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=6.4e-74 Score=585.91 Aligned_cols=371 Identities=24% Similarity=0.359 Sum_probs=329.9
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
|+|+|||+|++|++| | ||++++.++++. +|+.+++.++|.+|||+|+|+++|||++.|||+++.|++++.+
T Consensus 1 m~L~E~~aK~ll~~~-----G--Ipvp~~~~~~~~--~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 1 MNLHEYQAKQIFAKY-----G--IPVPRGYVATSV--EEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARA 71 (386)
T ss_pred CCCcHHHHHHHHHHc-----C--CCCCCceeeCCH--HHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHH
Confidence 789999999999999 8 566688888776 8898888898647999999999999999999999999999999
Q ss_pred HHHHHhccchhcc--C-CCCCceeeEEeeecCCCceEEEEEEEcCC--CceEEeccCCccccccccC----cEEEEecCc
Q 014514 84 FVKGRLGTEVEMG--G-CKGPITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEENWD----KVKTIFLPT 154 (423)
Q Consensus 84 a~~~~~~~~~~~~--~-~~~~v~~vLVe~~v~~~~Elylgi~~D~~--gp~il~~~~GGv~vE~~~d----~~~~~pi~~ 154 (423)
++++++++...++ + +...+++||||+|+++++|+|+|++.|+. +|+|+||.+||++||.++| ++.++.++|
T Consensus 72 a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p 151 (386)
T TIGR01016 72 AAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDP 151 (386)
T ss_pred HHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCC
Confidence 9999998655421 1 23477899999999999999999999985 7999999999999999754 566677899
Q ss_pred ccCCCHHHHHHHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCCCccccCccccc
Q 014514 155 EKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWA 231 (423)
Q Consensus 155 ~~~l~~~~~~~ll~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd~a~~r~~~~~~ 231 (423)
..+++.++++.+.. +++..+.+++.+++.+||++|.+++++++|||||++ .+|+++|+|||+.+||||.|||++ |.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~-~~ 230 (386)
T TIGR01016 152 LTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPD-LE 230 (386)
T ss_pred CcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHH-HH
Confidence 88999999999877 456789999999999999999999999999999999 777899999999999999999998 44
Q ss_pred cccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHH
Q 014514 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~ 311 (423)
.++++ ++.++.| ..+++.+++||+|+||||||+||||++|+|+|++..+ |++|+||+|+||+++++
T Consensus 231 ~~~~~----~~~~~~e--------~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~--g~~~aNplDlgg~a~~~ 296 (386)
T TIGR01016 231 EMRDY----SQEDPRE--------VLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLY--GGEPANFLDVGGGASAE 296 (386)
T ss_pred HhhcC----CcCChhh--------hHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHc--CCCCCCcEEecCCCCHH
Confidence 45554 4445444 3678889999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhh
Q 014514 312 EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~ 391 (423)
.|+++++++++ ||+++++|+|++||+++|+++| ++|+++++++. .++||++|+.|++.++++++|++
T Consensus 297 ~~~~al~~l~~----dp~vd~ilv~i~gg~~~~~~va---~~i~~a~~~~~-----~~kPvvv~~~g~~~~~~~~~L~~- 363 (386)
T TIGR01016 297 RVREALKLVLS----DKSVKVVFINIFGGITRCDLVA---KGLVEALKEVG-----VNVPVVVRLEGTNVEEGKKILAE- 363 (386)
T ss_pred HHHHHHHHHHc----CCCCCEEEEECCCCCCCHHHHH---HHHHHHHHhcC-----CCCcEEEEeCCccHHHHHHHHHH-
Confidence 99999999998 9999999999999999999999 99999998763 35899999889999999999998
Q ss_pred ccccC--CceeecCCCCCHHHHHHHHHHHh
Q 014514 392 GEELG--IPLEVYGPEATMTGICKQAIDCI 419 (423)
Q Consensus 392 ~~~~g--ip~~~~~~~~~~~~av~~~~~~~ 419 (423)
+| ||+| ++|++|++++++++
T Consensus 364 ---~G~~ip~~-----~~~~~Av~~~~~~~ 385 (386)
T TIGR01016 364 ---SGLNIIFA-----TSMEEAAEKAVEAA 385 (386)
T ss_pred ---cCCCcccc-----CCHHHHHHHHHHhh
Confidence 89 7876 89999999999875
No 6
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=5.8e-70 Score=557.10 Aligned_cols=372 Identities=26% Similarity=0.382 Sum_probs=327.6
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
|+|+||++|++|++| | ||++++.++++. +|+.+++.+++++|||+|+|++.+||+|+|||+++.|++++++
T Consensus 1 m~l~e~~ak~lL~~~-----g--Ipvp~~~~~~~~--~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~ 71 (388)
T PRK00696 1 MNLHEYQAKELFAKY-----G--VPVPRGIVATTP--EEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEARE 71 (388)
T ss_pred CCCCHHHHHHHHHHc-----C--CCCCCCeeeCCH--HHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHH
Confidence 789999999999999 8 566688888877 8999999999339999999998899999999999999999999
Q ss_pred HHHHHhccchhc--cC-CCCCceeeEEeeecCCCceEEEEEEEcCC-CceEE-eccCCccccccccC----cEEEEecCc
Q 014514 84 FVKGRLGTEVEM--GG-CKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTIS-FSECGGIEIEENWD----KVKTIFLPT 154 (423)
Q Consensus 84 a~~~~~~~~~~~--~~-~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il-~~~~GGv~vE~~~d----~~~~~pi~~ 154 (423)
++++|+++...+ .+ +...+.+||||+|++++.|+|+|+++||. ||+|+ +|.+||++||.++| ++.++.++|
T Consensus 72 a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p 151 (388)
T PRK00696 72 FAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDP 151 (388)
T ss_pred HHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEEeCCCCcchhhhcccCcceeEEEEcCC
Confidence 999999874311 11 22478899999999999999999999999 88875 66799999999887 666778899
Q ss_pred ccCCCHHHHHHHHhC--CChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCCCccccCccccc
Q 014514 155 EKHMTLDACAPLIAT--LPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWA 231 (423)
Q Consensus 155 ~~~l~~~~~~~ll~g--~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd~a~~r~~~~~~ 231 (423)
.++++..++++++.. ++..+.+++++++.+||+++.+++++++|||||++ .+|+++|+|||+.+||||.|||++ |.
T Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~-~~ 230 (388)
T PRK00696 152 LTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPD-LA 230 (388)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHh-HH
Confidence 888899999999874 67799999999999999999999999999999999 666799999999999999999998 66
Q ss_pred cccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHH
Q 014514 232 NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~ 311 (423)
++++. .+.++. |..+...+++||+|+||||||+||||+||+|+|++..+ |++|+||+|++|+++++
T Consensus 231 ~~~~~----~~~~~~--------e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~--g~~~~NPvDl~g~~~~e 296 (388)
T PRK00696 231 ELRDL----SEEDPL--------EAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLY--GGEPANFLDVGGGATAE 296 (388)
T ss_pred hhcCC----CcCChh--------hhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHc--CCCcCCeEEecCCCCHH
Confidence 56554 223333 33567788999999999999999999999999999985 78999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhh
Q 014514 312 EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 391 (423)
Q Consensus 312 ~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~ 391 (423)
.|+.+++++++ ||+++++++|+++++++|+.+| ++|+++.++.+ .++||++|+.|++.++++++|++
T Consensus 297 ~~~~aL~~l~~----d~~vd~vlv~~~~~~~~~~~va---~~i~~~~~~~~-----~~kPvv~~~~g~~~~~~~~~L~~- 363 (388)
T PRK00696 297 RVAEAFKIILS----DPNVKAILVNIFGGITRCDVIA---EGIIAAVKEVG-----VTVPLVVRLEGTNVELGKKILAE- 363 (388)
T ss_pred HHHHHHHHHhc----CCCCCEEEEEeCCCCCCHHHHH---HHHHHHHHhcC-----CCCcEEEEeCCCCHHHHHHHHHH-
Confidence 99999999998 9999999999999999998888 99999877632 36899999888999999999998
Q ss_pred ccccC--CceeecCCCCCHHHHHHHHHHHhH
Q 014514 392 GEELG--IPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 392 ~~~~g--ip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+| +|+| ++|++|++++.++++
T Consensus 364 ---~Gi~ip~f-----~~pe~A~~al~~~~~ 386 (388)
T PRK00696 364 ---SGLNIIAA-----DTLDDAAQKAVEAAK 386 (388)
T ss_pred ---CCCCceec-----CCHHHHHHHHHHHhc
Confidence 89 5566 899999999998874
No 7
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.1e-69 Score=502.97 Aligned_cols=371 Identities=23% Similarity=0.361 Sum_probs=333.8
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCc-------CeeEEeC
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKS-------GLVALNL 76 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~-------GGV~l~~ 76 (423)
.+|.|||||++|++| |+ .+.+..++++. .|+.+++.+++...+|+|+|+++|||||. |||.+-.
T Consensus 20 LNLqEfQSK~~l~k~-----Gv--~vQ~F~Va~n~--kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk 90 (412)
T KOG1447|consen 20 LNLQEFQSKEILSKN-----GV--RVQRFFVADNA--KEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITK 90 (412)
T ss_pred ccHHHhhhHHHHHhc-----Ce--eEEEEEEecCc--HHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEec
Confidence 458899999999999 84 55588887766 88888888988778999999999999986 9999999
Q ss_pred CHHHHHHHHHHHhccchhc--cCCCC-CceeeEEeeecCCCceEEEEEEEcCC--CceEEeccCCccccccc----cCcE
Q 014514 77 DLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEEN----WDKV 147 (423)
Q Consensus 77 ~~ee~~~a~~~~~~~~~~~--~~~~~-~v~~vLVe~~v~~~~Elylgi~~D~~--gp~il~~~~GGv~vE~~----~d~~ 147 (423)
++.++.+.+++|++..+.+ +..++ .+++|.|.+.+++.+|-|+.+..||+ ||+++.|..||+|||.. |+.+
T Consensus 91 ~k~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~I 170 (412)
T KOG1447|consen 91 DKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELI 170 (412)
T ss_pred CHhHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhh
Confidence 9999999999999977654 22233 88999999999999999999999997 89999999999999974 6788
Q ss_pred EEEecCcccCCCHHHHHHHHhC--CChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCCCccc
Q 014514 148 KTIFLPTEKHMTLDACAPLIAT--LPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAF 224 (423)
Q Consensus 148 ~~~pi~~~~~l~~~~~~~ll~g--~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd~a~~ 224 (423)
++.|||...++.+.++.++... |.+.-..+.++-+.+||.+|..-|++.+|||||.- .+|+++++||||.+||||.|
T Consensus 171 fk~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~f 250 (412)
T KOG1447|consen 171 FKEPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEF 250 (412)
T ss_pred ccccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhh
Confidence 9999999999999999998774 44566678899999999999999999999999999 88999999999999999999
Q ss_pred cCccccccccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeec
Q 014514 225 KNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEY 304 (423)
Q Consensus 225 r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDl 304 (423)
||+|+|+ |.+. .+.+|.|. +++++.++||-++|+|+|++||+|++|+|||.+... ||+||||+|+
T Consensus 251 RQKdIFa-md~~----eE~dPrEv--------eAakynLnYigmDGNIaClVNGAGLAMATmDiIkLn--GGePANFLDv 315 (412)
T KOG1447|consen 251 RQKDIFA-MDDK----EENDPREV--------EAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLN--GGEPANFLDV 315 (412)
T ss_pred hhcceee-cccc----cccCchhh--------hhhhcCcceeeccCceEEEEccchhhhheeeeEEec--CCCCcceeec
Confidence 9999986 4433 55566654 789999999999999999999999999999999985 9999999999
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
||+...+++++|++++.+ ||.|+++|||+||||.+|..+| +||+.|.++.. .++|+|+|+-|+|.++|
T Consensus 316 GGgV~EdqV~~Af~ilTa----DPkVk~iLvNiFGGIVNCAtIA---NGiv~A~~kl~-----LnVPlVVRLEGTNV~~A 383 (412)
T KOG1447|consen 316 GGGVKEDQVYQAFKILTA----DPKVKAILVNIFGGIVNCATIA---NGIVKACRKLE-----LNVPLVVRLEGTNVQEA 383 (412)
T ss_pred cCcccHHHHHHHhhhhcc----CCceeEEEEehhcceehhHhHh---hHHHHHHHhhc-----CCCcEEEEEcCCCHHHH
Confidence 999999999999999987 9999999999999999999999 99999999885 58999999999999999
Q ss_pred HHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 385 LAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 385 ~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
+++|+. +|+|+. +..++++|+..||.
T Consensus 384 ~~Ilk~----SGLpI~---tA~dLddAA~KAVa 409 (412)
T KOG1447|consen 384 QKILKK----SGLPIT---TAIDLDDAAKKAVA 409 (412)
T ss_pred HHHHHh----cCCcee---eccchHHHHHHHhh
Confidence 999988 999998 45789999988874
No 8
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.3e-64 Score=486.96 Aligned_cols=376 Identities=23% Similarity=0.310 Sum_probs=340.7
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCc-------CeeEEeC
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKS-------GLVALNL 76 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~-------GGV~l~~ 76 (423)
..++||.+.+||.+| ||++| .++++.|+ |||.++++.+++..+|+|+|+++|||+|. |||++..
T Consensus 23 L~~hey~~~~ll~~~-----Gv~vp--~g~vA~sp--eEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf 93 (434)
T KOG2799|consen 23 LGIHEYRSAALLRKY-----GINVP--LGYVAKSP--EEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVF 93 (434)
T ss_pred hhHHHHHHHHHHHHc-----CCCCC--CCcccCCH--HHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEe
Confidence 458999999999999 97666 88899988 99999999999889999999999999986 8999999
Q ss_pred CHHHHHHHHHHHhccchhc--cCCCC-CceeeEEeeecCCCceEEEEEEEcCC--CceEEeccCCccccccc----cCcE
Q 014514 77 DLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEEN----WDKV 147 (423)
Q Consensus 77 ~~ee~~~a~~~~~~~~~~~--~~~~~-~v~~vLVe~~v~~~~Elylgi~~D~~--gp~il~~~~GGv~vE~~----~d~~ 147 (423)
+|+|++..+.+|+++.+.| +|+.+ .++.|.|.+......|+|++++.||. +|+++.|..||+++|.+ +|.+
T Consensus 94 ~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai 173 (434)
T KOG2799|consen 94 SPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAI 173 (434)
T ss_pred ChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccch
Confidence 9999999999999988766 56666 88999999999988999999999997 89999999999999984 6888
Q ss_pred EEEecCcccCCCHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCC-CeEEEeeEEEeCCCcc
Q 014514 148 KTIFLPTEKHMTLDACAPLIATL--PLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNG-EPYPLDMRGELDDTAA 223 (423)
Q Consensus 148 ~~~pi~~~~~l~~~~~~~ll~g~--~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g-~~valDaki~ldd~a~ 223 (423)
.+.|++...+|+...+..+..++ ....+..+.+.+.+||++|...|++.+|||||.. .++ .+++.|+|+.+|+||.
T Consensus 174 ~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~ 253 (434)
T KOG2799|consen 174 IKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAA 253 (434)
T ss_pred hcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHH
Confidence 88899999999999998887754 4577889999999999999999999999999998 555 7999999999999999
Q ss_pred ccCccccccccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceee
Q 014514 224 FKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 303 (423)
Q Consensus 224 ~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lD 303 (423)
|||..+|. ++++ .+.+|.| .+++++++||+.|+|+|+|++||+|++|+|||.+..+ ||.||||+|
T Consensus 254 fRq~~iF~-~rd~----~QEd~re--------~~aak~~ln~igldG~igC~vngaglamaTmdiiklh--gg~panfld 318 (434)
T KOG2799|consen 254 FRQKKIFL-LRDL----SQEDPRE--------VTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLH--GGTPANFLD 318 (434)
T ss_pred HHhhhhhh-ccch----hhcCchh--------hhHHHhccceeccCCccceeeccchhhhhheeeeeec--CCCCcceee
Confidence 99998764 6655 5666654 4788999999999999999999999999999999986 899999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 014514 304 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 383 (423)
Q Consensus 304 lgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~ 383 (423)
.||+|+.|.+.++++++.+ ||.+.++|+|+||||.+|+-+| .|++.+.++.. .++||++|+.|++.++
T Consensus 319 VGg~Atve~v~eaf~lits----d~kv~ailvnifGgi~rCDvia---~Giv~aar~l~-----~~ipiv~rlqgt~v~~ 386 (434)
T KOG2799|consen 319 VGGGATVEQVREAFSLITS----DKKVMAILVNIFGGIMRCDVIA---FGIVLAARELE-----LNIPIVVRLQGTRVEA 386 (434)
T ss_pred eCCCCcHHHHHHHHHHHhc----ChhHHHHHHHHhcCeeecccee---cchhhhhhhhh-----cCCCEEEEecCCchhh
Confidence 9999999999999999998 9999999999999999999999 99999999985 5899999999999999
Q ss_pred HHHHHHhhccccCCceeecCCCCCHHHHHHHH------HHHhHhc
Q 014514 384 GLAKMRALGEELGIPLEVYGPEATMTGICKQA------IDCIMSA 422 (423)
Q Consensus 384 a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~------~~~~~~~ 422 (423)
|+.++.+ +|+.++.| +..++|.+++ +++++++
T Consensus 387 ak~~i~~----sgmri~~~---deldeaa~~~v~~S~ivela~e~ 424 (434)
T KOG2799|consen 387 AKPIINT----SGMRIRSF---DELDEAAKKAVGGSTIVELASEK 424 (434)
T ss_pred hhhhHhh----cCceEEec---hhhhHHhhhhcccchHHHHhhhc
Confidence 9999998 99999954 8999999995 5555543
No 9
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=5.3e-43 Score=326.56 Aligned_cols=191 Identities=31% Similarity=0.487 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+|+|||||+||++| | ||+|++.+++++ +|+.+++.+++..++|+|||+++|||||+|||+++.|++|++++
T Consensus 1 ~l~EyqaK~ll~~~-----g--i~vp~g~~a~s~--eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~ 71 (202)
T PF08442_consen 1 NLHEYQAKELLRKY-----G--IPVPRGVVATSP--EEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEA 71 (202)
T ss_dssp BE-HHHHHHHHHCT-----T------SEEEESSH--HHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHH
T ss_pred CchHHHHHHHHHHc-----C--CCCCCeeecCCH--HHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHH
Confidence 58999999999999 8 566699999987 99999999998778899999999999999999999999999999
Q ss_pred HHHHhccchhc--cCCCC-CceeeEEeeecCCCceEEEEEEEcCC--CceEEeccCCcccccc----ccCcEEEEecCcc
Q 014514 85 VKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL--GCTISFSECGGIEIEE----NWDKVKTIFLPTE 155 (423)
Q Consensus 85 ~~~~~~~~~~~--~~~~~-~v~~vLVe~~v~~~~Elylgi~~D~~--gp~il~~~~GGv~vE~----~~d~~~~~pi~~~ 155 (423)
+++|+++.+.| +++.+ .+++|||||++++.+|+|++++.||. +|+|++|.+|||+||+ .|+++.++||||.
T Consensus 72 a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~ 151 (202)
T PF08442_consen 72 AKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPT 151 (202)
T ss_dssp HHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTT
T ss_pred HHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCC
Confidence 99999998875 45555 89999999999999999999999997 6999999999999999 4789999999999
Q ss_pred cCCCHHHHHHHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee
Q 014514 156 KHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL 204 (423)
Q Consensus 156 ~~l~~~~~~~ll~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v 204 (423)
.+++.++++++.. |+++...+.+.+++.+||++|.++|++++|||||++
T Consensus 152 ~g~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 152 EGLTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp TB--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 9999999999987 566678899999999999999999999999999975
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=1.1e-38 Score=301.94 Aligned_cols=204 Identities=19% Similarity=0.219 Sum_probs=144.5
Q ss_pred CCCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEe-CCHHH
Q 014514 3 RKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALN-LDLAQ 80 (423)
Q Consensus 3 ~~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~-~~~ee 80 (423)
|..|+|+|+|+||+.| | ||++++.+++++ +|+.+++.++| ||||+|..++ .-||+++|||+++ .|+++
T Consensus 7 ~~~L~e~e~~~lL~~y-----G--I~~~~~~~~~~~--~ea~~~a~~ig-~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~ 76 (222)
T PF13549_consen 7 RGWLTEAEAKELLAAY-----G--IPVPPTRLVTSA--EEAVAAAEEIG-FPVVLKIVSPDIAHKSDVGGVRLNLNSPEE 76 (222)
T ss_dssp --EE-HHHHHHHHHTT-----T--------EEESSH--HHHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHH
T ss_pred CCccCHHHHHHHHHHc-----C--cCCCCeeEeCCH--HHHHHHHHHhC-CCEEEEEecCCCCcCCCCCcEEECCCCHHH
Confidence 5679999999999999 8 566699999887 99999999997 9999997664 5589999999999 58999
Q ss_pred HHHHHHHHhccchhccCCCCCceeeEEeeecC-CCceEEEEEEEcCC-CceEEeccCCccccccccCcEEEE-ecCccc-
Q 014514 81 VAEFVKGRLGTEVEMGGCKGPITTFIVEPFVP-HNQEYYLSIVSDRL-GCTISFSECGGIEIEENWDKVKTI-FLPTEK- 156 (423)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~-~~~Elylgi~~D~~-gp~il~~~~GGv~vE~~~d~~~~~-pi~~~~- 156 (423)
+++++++|..+... +.+...+.+|+||+|++ .+.|+++|+.+||. ||+|+|| .||+.+|.++|+++++ |++..+
T Consensus 77 v~~a~~~l~~~~~~-~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G-~GG~~vE~~~D~~~~l~Pl~~~~a 154 (222)
T PF13549_consen 77 VREAFERLRERVAA-HHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFG-LGGIFVELLKDVAFRLPPLSEADA 154 (222)
T ss_dssp HHHHHHHHHHHHHH-H-TT----EEEEEE------EEEEEEEEEETTTEEEEEEE-E-STTHHHH---EEEESS--HHHH
T ss_pred HHHHHHHHHHHHHH-hCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEc-CCCceeeeecceEEeeCCCCHHHH
Confidence 99999999887654 34666899999999999 89999999999999 9999999 9999999999999887 544332
Q ss_pred --CCCHHHHHHHHhCCCh---hHHHHHHHHHHHHHHHhhcc-CcceeeeeeeeecCCCeEEEeeEEEe
Q 014514 157 --HMTLDACAPLIATLPL---EFRGKIGDFIMGVFAVFQDL-DFSFIEMNPFTLVNGEPYPLDMRGEL 218 (423)
Q Consensus 157 --~l~~~~~~~ll~g~~~---~~~~~l~~~l~~L~~l~~~~-d~~~lEINPL~v~~g~~valDaki~l 218 (423)
++.+.++.+++.|+++ .|++++++++.++|+++.++ ++.++|||||++..++++|+||+|++
T Consensus 155 ~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g~~avDa~i~l 222 (222)
T PF13549_consen 155 REMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDGAVAVDARIRL 222 (222)
T ss_dssp HHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS-EEE--EEEEE
T ss_pred HHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCceEEEEEEEEC
Confidence 4555555566667654 79999999999999999986 69999999999944559999999975
No 11
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.94 E-value=9.2e-29 Score=248.12 Aligned_cols=413 Identities=38% Similarity=0.466 Sum_probs=334.5
Q ss_pred CCCCCCHHHHHHHHHHhhhc---cCCCCCc-------------------CCceEEe-eCCCHHhHHh-----hccccCCC
Q 014514 2 ARKKIREYDSKRLLKEHLKR---LAGLDLQ-------------------ICSAQVT-ESTDFSELTN-----KEPWLSSS 53 (423)
Q Consensus 2 ~~~~L~E~eak~lL~~y~~~---~~GI~ip-------------------v~~~~~~-~~~~~~ea~~-----aa~~lg~~ 53 (423)
++..|.||++|.++..++.| .|+=..| ...-.+- .+...++..+ ...|+.+.
T Consensus 1 a~k~lfe~dtKAi~~~~q~ravqlckr~~psVaa~~~~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~~~faS~ 80 (600)
T KOG1254|consen 1 ARKKLFEYDTKAIVWGMQQRAVQLCKRHFPSVAAIIYFTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVEPWFAST 80 (600)
T ss_pred CCcchhhccchHhhhhhhhhhhhhhhccCccceeeecccccchhheecCCceEEeechhhHHHHHhcCcccceeechhhh
Confidence 57789999999888777655 1211111 1111111 1111233333 23456566
Q ss_pred cEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCC------CceEEEEEEEcCCC
Q 014514 54 RLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH------NQEYYLSIVSDRLG 127 (423)
Q Consensus 54 pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~------~~Elylgi~~D~~g 127 (423)
..|.||+.+++.|++.|.|.++.+..+..++.+.+.++..+..+..++.+-+.|||++++ -.|.|+.+..+|.|
T Consensus 81 rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k~~~iiGPaTvggVePg~fkignt~g~~dnil~~klyR~G 160 (600)
T KOG1254|consen 81 RSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVKGVGIIGPATVGGVEPGVFKIGNTGGMMDNILNSKLYRPG 160 (600)
T ss_pred hhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhccccccceEEeeeeeccccCCccccCCCCcchhhhhhhcccCCc
Confidence 789999999999999999999987777777888888776653334457889999999987 47999999999999
Q ss_pred ceEEeccCCccccccccCcEEEEecCcccCC----CHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeee---
Q 014514 128 CTISFSECGGIEIEENWDKVKTIFLPTEKHM----TLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMN--- 200 (423)
Q Consensus 128 p~il~~~~GGv~vE~~~d~~~~~pi~~~~~l----~~~~~~~ll~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEIN--- 200 (423)
.++.||.+|||++|+..+++.+.-. |.+++ +.+-++.+++.++...-+.+.++++.|+.++.+.+.+.+|+|
T Consensus 161 sv~~vS~sGGmsnE~nn~isrtt~g-~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~~e~~k~g 239 (600)
T KOG1254|consen 161 SVIYVSRSGGMSNELNNIISRTTDG-PYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTFLEANKEG 239 (600)
T ss_pred cEEEEecCCCcchhhhhhhhheecc-ceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcccceeehhhhhhcC
Confidence 9999999999999998876665422 22211 345556667777666667899999999999999999999999
Q ss_pred ----eeee-cCC---CeEEEeeEEEeCCCccccCccccc--------------------------cccCCCCCCCCCCch
Q 014514 201 ----PFTL-VNG---EPYPLDMRGELDDTAAFKNFKKWA--------------------------NIEFPLPFGRVLSST 246 (423)
Q Consensus 201 ----PL~v-~~g---~~valDaki~ldd~a~~r~~~~~~--------------------------~~~~~~~~~~~~~~~ 246 (423)
||++ ..| .++-+|....+++++.|..-+.|. .+++|-+|++..+..
T Consensus 240 ~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Grvvp~~ 319 (600)
T KOG1254|consen 240 KITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGRVVPKT 319 (600)
T ss_pred CccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhhccchhcccccceecCcc
Confidence 9998 544 368899999999999999888887 678888899999999
Q ss_pred hhcccccchhhhccCCcEEecCCCcEEEEEcCc-cHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhc
Q 014514 247 ESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGG-GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCAT 325 (423)
Q Consensus 247 e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~-G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~ 325 (423)
|....-+|++.+..++++.++..++||++..|+ |..+.+.|+....|+-.+.+|+-.+++-+...++.+..+.++++|+
T Consensus 320 Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kfie~~~ 399 (600)
T KOG1254|consen 320 EVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKFIEICT 399 (600)
T ss_pred cCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEccccccccchHHHHHHHHHHh
Confidence 999999999999999999999999998887766 9999999999988776778999999999999999999999999988
Q ss_pred c-CCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCC
Q 014514 326 A-DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGP 404 (423)
Q Consensus 326 ~-~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~ 404 (423)
. +|+.+..+.-+.++|+++...+++|.+|+.+|.+.+.++.. .+-+.+|..|++.++++.-++.+.+..+.|..+||+
T Consensus 400 m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLltigdRfgg-ald~aaR~f~~ayd~GL~~m~fv~~~~k~~~~V~Gi 478 (600)
T KOG1254|consen 400 MLTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLTIGDRFGG-ALDIAARRFGPAYDKGLAPMRFVGKMRKVPIEVYGI 478 (600)
T ss_pred hccCCCCceeEeccCceEEeccHHHHHHHHHHHHhhhhhhhcc-hhhHHHHhcChhhhccCchHHHhhhhhCCCceecCC
Confidence 4 77777767777899999999999999999999999877655 577999999999999999999988889999999999
Q ss_pred CCCHHHHHHHHH
Q 014514 405 EATMTGICKQAI 416 (423)
Q Consensus 405 ~~~~~~av~~~~ 416 (423)
+-++...+...+
T Consensus 479 ghriksi~n~d~ 490 (600)
T KOG1254|consen 479 GHRIKSINNPDK 490 (600)
T ss_pred cceeeccCCccc
Confidence 988776655443
No 12
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.72 E-value=4.1e-18 Score=181.44 Aligned_cols=374 Identities=16% Similarity=0.060 Sum_probs=230.3
Q ss_pred CCCCCCHHHHHHHHHHhhhccCC----CCCcCCceE------EeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcC
Q 014514 2 ARKKIREYDSKRLLKEHLKRLAG----LDLQICSAQ------VTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSG 70 (423)
Q Consensus 2 ~~~~L~E~eak~lL~~y~~~~~G----I~ipv~~~~------~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~G 70 (423)
.++..-+|+.++.|.+| | +|++ +.. .+.+. ......+..++ +++|.|..++ +.|+...+
T Consensus 20 ~~~~~vg~~i~~nL~~~-----g~g~i~PVn--p~~~~v~G~~ay~s--~~~lp~~~dla-v~~v~~~~~~~i~~~~~~k 89 (598)
T COG1042 20 ERPGKLGYEILRNLLEY-----GQGKIYPVN--PKYDEVLGVKAYTS--VADLPDAPDLA-VIVVPAKVVPEIVHELGEK 89 (598)
T ss_pred CCcchhHHHHHHHHHhc-----CCCceEecC--ccccccccccccch--HhhCCCCCCee-EEEechhhhHHHHHHhhcc
Confidence 45567899999999999 7 5444 444 34433 33344445664 7889986554 44666677
Q ss_pred eeEEe-CCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEE--EEEcCC-CceEEeccCCccccccccCc
Q 014514 71 LVALN-LDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS--IVSDRL-GCTISFSECGGIEIEENWDK 146 (423)
Q Consensus 71 GV~l~-~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylg--i~~D~~-gp~il~~~~GGv~vE~~~d~ 146 (423)
||+.+ ...+...++.+++......-.....+....++.|+.....+..+| .+.++. ++. +. -|+..++...+.
T Consensus 90 Gv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn~~G~~~~~~glna~f~p~~~~~--~~-g~~afvsqsgav 166 (598)
T COG1042 90 GVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPIIGLNATFDPVFGLG--RG-GGGAFVSQSGAV 166 (598)
T ss_pred CCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEeccccccccccccccccccCcccccc--cC-CCeEEEEechHH
Confidence 77776 334344444443222111000000123467899999888899999 778776 333 54 666788888776
Q ss_pred EEEE-ecCcccCCC-HHHHHHHHh---CCChhHHHHHHHHHHHHHHHhhcc-Ccceeeeeeeee-cC-CCeEEEeeEEEe
Q 014514 147 VKTI-FLPTEKHMT-LDACAPLIA---TLPLEFRGKIGDFIMGVFAVFQDL-DFSFIEMNPFTL-VN-GEPYPLDMRGEL 218 (423)
Q Consensus 147 ~~~~-pi~~~~~l~-~~~~~~ll~---g~~~~~~~~l~~~l~~L~~l~~~~-d~~~lEINPL~v-~~-g~~valDaki~l 218 (423)
..++ ++...+++- ...+..... +........+.+...+...++.|. +....++||... +. -.++++|+..+.
T Consensus 167 ~~~il~~~~~~~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~~~~~kpii~lk~gr~~ 246 (598)
T COG1042 167 SFAILDWANEDGMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAAERKKPIIALKAGRSE 246 (598)
T ss_pred HHhccchhhhcCCceeEEEeecchhhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHHHhcCCCEEEEeccCCH
Confidence 6654 332222110 011000000 011111122333333444444443 345667888887 33 259999998776
Q ss_pred CCCcccc-Ccc-c------ccc-ccCCCCCCCCCCchhhcccccchhhhccCCcEEec-CCCcEEEEEcCccHHHHHHHH
Q 014514 219 DDTAAFK-NFK-K------WAN-IEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLN-PKGRIWTMVAGGGASVIYADT 288 (423)
Q Consensus 219 dd~a~~r-~~~-~------~~~-~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~-l~g~I~ii~NG~G~~~~~~D~ 288 (423)
.....+- |-. + |.. ++.- ---+..+..|.+ ...+.--.+.. -+.|+++|+||||++.++.|.
T Consensus 247 ~~akAa~shTgslag~~~~y~Aa~~~a-gvir~~~~~elf-------~~~k~l~~~~~~~g~~~~ivtn~Gg~gvla~D~ 318 (598)
T COG1042 247 AGAKAAASHTGSLAGSDEAYDAAFKQA-GVIRVESIEELF-------DAAKALSHQPPPAGDRVAIITNGGGPGVLAADA 318 (598)
T ss_pred HHHHHHhcccccccccchhhHHHHHhh-CceeccChHHHH-------HHHHHhccCCCCCCcceeEEecCCCccccchhH
Confidence 6432221 111 0 000 0000 001223334432 11111111222 267899999999999999999
Q ss_pred HhccCCCCC---------------------CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 289 VGDLGYASE---------------------LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 289 l~~~g~gg~---------------------~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
+.+. |.+ ..||+|+.|+++.++|.++++.+++ ++++++++++. ++..+...+
T Consensus 319 l~~~--g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~----~~~~~~llvi~~~~~~~~~~~ 392 (598)
T COG1042 319 LEER--GLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLR----DENVDALLVIVLPPASADPEE 392 (598)
T ss_pred HHHc--CCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHh----ccCCceEEEEecCCCCCCchh
Confidence 9996 454 2699999999999999999999998 99999999888 788777778
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccce-EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 347 VATTFNGIIRALREKESKLKAARMH-IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~p-vv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+| +.++.+..+. .++| +++.+||.+.+.++++|.+ .|||+| .+|+.|++....++.
T Consensus 393 ~a---~~~~~~~~~~------~~k~~v~~~~gg~~~~~~~~~l~~----~gip~~-----~~pe~a~~a~~~l~~ 449 (598)
T COG1042 393 TA---EAIIRATAKK------RGKPVVVSSMGGESSEKARRLLEE----AGIPTY-----PTPERAVKALSALAR 449 (598)
T ss_pred hh---HHHHHhhhhh------CCCceEEEecCCcchHHHHHHhhh----cCCCCc-----cCchHHHHHHHHHHH
Confidence 77 8888872222 3577 5555999999999999998 999998 899999998877764
No 13
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.71 E-value=2.6e-17 Score=147.12 Aligned_cols=122 Identities=19% Similarity=0.280 Sum_probs=108.9
Q ss_pred EEcCccHHHHHHHHHhccCC--------------CCCCCceeeccCCCC----------HHHHHHHHHHHHhhhccCCCC
Q 014514 275 MVAGGGASVIYADTVGDLGY--------------ASELGNYAEYSGAPN----------EEEVLQYARVVIDCATADPDG 330 (423)
Q Consensus 275 i~NG~G~~~~~~D~l~~~g~--------------gg~~aN~lDlgG~a~----------~~~~~~a~~~ll~~~~~~~~~ 330 (423)
|+||||+++-|+|++.. + |+.++||+|+|||+. ++...++++.+++ ||++
T Consensus 1 l~~GgtL~~Ea~~~i~~--~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~----Dp~v 74 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISD--ALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAA----DPEV 74 (153)
T ss_dssp EESSHHHHHHHHHHHHH--TTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHT----STTE
T ss_pred CcCcHHHHHHHHHHHHH--hhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhc----CCCc
Confidence 58999999999999998 5 678999999999999 8999999999998 9999
Q ss_pred CEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH-----HHHHHHHhhccccCCceeecCCC
Q 014514 331 RKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ-----TGLAKMRALGEELGIPLEVYGPE 405 (423)
Q Consensus 331 ~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~-----~a~~~l~~~~~~~gip~~~~~~~ 405 (423)
++||+|+++|+.+|+++| .++++++++... +.+++|||+|+.|++++ +..++|++ +|++++
T Consensus 75 ~vIlvd~~~G~g~~~~~A---~~l~~a~~~~~~--~~~~~pvVa~v~GT~~dpq~~~~~~~~L~~----~G~~v~----- 140 (153)
T PF00549_consen 75 KVILVDIVGGIGSCEDPA---AGLIPAIKEAKA--EGRKKPVVARVCGTNADPQGRMGQAGALED----AGVIVA----- 140 (153)
T ss_dssp SEEEEEEESSSSSHHHHH---HHHHHHHSHCTH--TTT-SEEEEEEESTTCHTTSCHHHHHHHHC----TTCSCH-----
T ss_pred cEEEEEeccccCchHHHH---HHHHHHHHhccc--cCCCCcEEEEeeeecCCCCCcHHHHHHHHh----CCCccc-----
Confidence 999999999999999999 999999988642 12579999999999999 99999998 999887
Q ss_pred CCHHHHHHHHH
Q 014514 406 ATMTGICKQAI 416 (423)
Q Consensus 406 ~~~~~av~~~~ 416 (423)
++..+|++.|.
T Consensus 141 ~s~~~A~~~A~ 151 (153)
T PF00549_consen 141 ESNAQAARAAG 151 (153)
T ss_dssp HHHHHHHHHHT
T ss_pred ccHHHHHHHcC
Confidence 67787777664
No 14
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.62 E-value=7.1e-15 Score=153.40 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=111.2
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCC---------------------CceeeccCCCCHHHHHHHHHHHHhhhccC
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASEL---------------------GNYAEYSGAPNEEEVLQYARVVIDCATAD 327 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~---------------------aN~lDlgG~a~~~~~~~a~~~ll~~~~~~ 327 (423)
++||++|+|+||++++++|.+... |.+. .||+|++++++++.|.++++.+++ |
T Consensus 295 g~rvaivs~sGG~g~l~aD~~~~~--Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~----d 368 (447)
T TIGR02717 295 GNRVAIITNAGGPGVIATDACEEN--GLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAE----D 368 (447)
T ss_pred CCeEEEEECCchHHHHHHHHHHHc--CCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHc----C
Confidence 678999999999999999999986 5553 499999999999999999999998 9
Q ss_pred CCCCEEEEEe-cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCC
Q 014514 328 PDGRKRALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPE 405 (423)
Q Consensus 328 ~~~~~vlv~~-~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~ 405 (423)
|+++++++++ +++..+++.++ +.++++.++.. .+||+++ .||...++.++.|++ +|||+|
T Consensus 369 p~vd~Vlv~~~~~~~~~~~~~a---~~l~~~~~~~~------~KPvv~~~~gg~~~~~~~~~L~~----~Gip~f----- 430 (447)
T TIGR02717 369 ENVDGVVVVLTPTAMTDPEEVA---KGIIEGAKKSN------EKPVVAGFMGGKSVDPAKRILEE----NGIPNY----- 430 (447)
T ss_pred CCCCEEEEEccCCccCCHHHHH---HHHHHHHHhcC------CCcEEEEecCCccHHHHHHHHHh----CCCCcc-----
Confidence 9999999888 67888888888 99998776641 5788888 667888889999988 999998
Q ss_pred CCHHHHHHHHHHHhH
Q 014514 406 ATMTGICKQAIDCIM 420 (423)
Q Consensus 406 ~~~~~av~~~~~~~~ 420 (423)
.+|++|++.+..+++
T Consensus 431 ~~p~~A~~al~~~~~ 445 (447)
T TIGR02717 431 TFPERAVKALSALYR 445 (447)
T ss_pred CCHHHHHHHHHHHHh
Confidence 899999999877654
No 15
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.29 E-value=1.2e-12 Score=139.82 Aligned_cols=122 Identities=22% Similarity=0.280 Sum_probs=107.2
Q ss_pred CCCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEeCCHHHH
Q 014514 3 RKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQV 81 (423)
Q Consensus 3 ~~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~~~~ee~ 81 (423)
+..+.++|++++|++| || |++.+ ++++. +|+.++++.++ |...+ +.||+++|||.++.+..++
T Consensus 468 ~~~~~~~e~~~~l~~~-----gi--~~~~~-~~~~~--~ea~~~a~~~~------Kl~s~~i~hksev~gv~l~~~~~~v 531 (598)
T COG1042 468 GTTLDEPEAKELLEAY-----GI--PVPAT-IASTL--DEAVHIAESIG------KLRSPDIDHKSEVGGVMLNRTADAV 531 (598)
T ss_pred ccccCchhhhhHHHHh-----cC--ccccc-ccCCH--HHHHHHHHHhh------hccCCccchhhhccceeecCcHHHH
Confidence 4568999999999999 85 55588 87776 89999988874 75443 5689999999999889999
Q ss_pred HHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-CceEEeccCCccccccccCcEEEE
Q 014514 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFSECGGIEIEENWDKVKTI 150 (423)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~~~~GGv~vE~~~d~~~~~ 150 (423)
++++..+..+ + ..+.+++||+|.. .|+++++..|+. ||+++|| .||+.+|.++|.++++
T Consensus 532 ~~a~~~~~~~------p-a~i~g~lvq~m~~--~E~~vgv~~dp~fgp~i~~G-~Gg~~ve~l~d~~~~~ 591 (598)
T COG1042 532 EKAADDILAR------P-ARIAGVLVQTMAK--LELIVGVKNDPTFGPLILFG-EGGIEVEVLKDVVVAL 591 (598)
T ss_pred HHHHHhHhcc------c-chhhhhhhHhhhh--ccceeeccCCCcchhHHHhc-CCceEEEeecceeecc
Confidence 9999999765 5 6889999999999 999999999999 9999999 9999999999998886
No 16
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.87 E-value=1.6e-08 Score=93.91 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcE-EEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRL-VVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pv-VvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
=+|+++++| | ||++.+..+++. ++|.+.....+ .|+ |||++.+++|| ||.++.|.+|+.++.+++
T Consensus 5 faK~fm~~~-----~--IPTa~~~~f~~~--~~A~~~l~~~~-~p~~ViKadGla~GK----GV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 5 FAKEFMKRY-----G--IPTAKYKVFTDY--EEALEYLEEQG-YPYVVIKADGLAAGK----GVVIADDREEALEALREI 70 (194)
T ss_dssp HHHHHHHHT-----T---SB--EEEESSH--HHHHHHHHHHS-SSEEEEEESSSCTTT----SEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHc-----C--CCCCCeeEECCH--HHHHHHHHhcC-CCceEEccCCCCCCC----EEEEeCCHHHHHHHHHHh
Confidence 489999999 7 677788888876 89999888885 788 99999998888 899999999999999999
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
+..... + ..-..|+||+++. |.|+.+.+..|...
T Consensus 71 ~~~~~f--g--~~~~~vvIEE~l~-G~E~S~~a~~dG~~ 104 (194)
T PF01071_consen 71 FVDRKF--G--DAGSKVVIEEFLE-GEEVSLFALTDGKN 104 (194)
T ss_dssp HTSSTT--C--CCGSSEEEEE----SEEEEEEEEEESSE
T ss_pred cccccc--C--CCCCcEEEEeccC-CeEEEEEEEEcCCe
Confidence 874321 2 2346799999998 99999999999864
No 17
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.63 E-value=8.6e-07 Score=92.81 Aligned_cols=109 Identities=10% Similarity=0.144 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+..|++|+++ || |++++. .+++. +++.+++..++ ||+|+||....|+| ||.+..+.+|+.++
T Consensus 115 DK~~~r~~l~~~-----gi--p~pp~~~~~~~~~--~e~~~~~~~ig-~PvvvKP~~g~gs~----Gv~~v~~~~el~~~ 180 (449)
T TIGR00514 115 DKVSAIETMKKA-----GV--PCVPGSDGLVEDE--EENVRIAKRIG-YPVIIKATAGGGGR----GMRVVREPDELVKS 180 (449)
T ss_pred CHHHHHHHHHHC-----CC--CCCCCcccCcCCH--HHHHHHHHHhC-CCEEEEeCCCCCCC----ccEEECCHHHHHHH
Confidence 346778889998 85 554543 44444 78888888886 99999998876666 99999999999988
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++........ ......++||++++..+|+.+.+..|..|.++.++
T Consensus 181 ~~~~~~~~~~----~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~ 225 (449)
T TIGR00514 181 ISMTRAEAKA----AFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLG 225 (449)
T ss_pred HHHHHHHHHH----hCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEe
Confidence 8776432211 01124689999999888999999999877666654
No 18
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.56 E-value=2.7e-07 Score=93.85 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=83.3
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
=+|+++++| | ||+.....++++ ++|.+...+.+ .|+|+||+-+++|| ||++..+.+|+.+++++|+
T Consensus 106 faK~fm~k~-----~--IPta~y~~f~~~--e~a~ayi~~~g-~piVVKadGLaaGK----GV~V~~~~eeA~~a~~~~l 171 (428)
T COG0151 106 FAKDFMKKY-----G--IPTAEYEVFTDP--EEAKAYIDEKG-APIVVKADGLAAGK----GVIVAMTLEEAEAAVDEML 171 (428)
T ss_pred HHHHHHHHc-----C--CCcccccccCCH--HHHHHHHHHcC-CCEEEecccccCCC----CeEEcCCHHHHHHHHHHHH
Confidence 378999999 8 677788887765 99999999986 89999999999889 9999999999999999998
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
..... + .....|+|||++. +.|+.+-...|...
T Consensus 172 ~~~~f--g--~~g~~VVIEEfL~-GeE~S~~a~~DG~~ 204 (428)
T COG0151 172 EGNAF--G--SAGARVVIEEFLD-GEEFSLQAFVDGKT 204 (428)
T ss_pred hhccc--c--CCCCcEEEEeccc-ceEEEEEEEEcCCe
Confidence 76442 2 1235699999999 88999999999753
No 19
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.41 E-value=9.6e-06 Score=86.19 Aligned_cols=109 Identities=14% Similarity=0.226 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEE--eeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQV--TESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~--~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+=+.+|++|+++ | ||++++.. .++ .+++.+.+..+| |||++||..-.|+| ||.+..+.+|+.++
T Consensus 115 DK~~~k~~l~~~-----G--Vpv~p~~~~~v~~--~~e~~~~a~~ig-yPvvIKp~~GgGG~----Gv~iv~~~~eL~~a 180 (499)
T PRK08654 115 SKINAKKLMKKA-----G--VPVLPGTEEGIED--IEEAKEIAEEIG-YPVIIKASAGGGGI----GMRVVYSEEELEDA 180 (499)
T ss_pred CHHHHHHHHHHc-----C--cCCCCCcCcCCCC--HHHHHHHHHHhC-CCEEEEeCCCCCCC----eEEEeCCHHHHHHH
Confidence 345678888888 8 45556543 334 378888888896 99999997765555 99999999999888
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++..........+ -..++||++++..+|+-+.+..|..|.++.++
T Consensus 181 ~~~~~~~a~~~f~----~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~ 225 (499)
T PRK08654 181 IESTQSIAQSAFG----DSTVFIEKYLEKPRHIEIQILADKHGNVIHLG 225 (499)
T ss_pred HHHHHHHHHHhCC----CCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 7765422111001 13589999999889999999999888776554
No 20
>PRK05586 biotin carboxylase; Validated
Probab=98.39 E-value=1e-05 Score=84.75 Aligned_cols=108 Identities=12% Similarity=0.184 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
=+..|++|+++ || |++++. .+.+. +++.+++..++ ||+|+||....|+| ||.+..+.+|+.+++
T Consensus 116 K~~~k~~l~~~-----GI--pvp~~~~~~~~~~--~e~~~~~~~ig-yPvvvKP~~gggg~----Gv~~v~~~~el~~a~ 181 (447)
T PRK05586 116 KSNAREIMIKA-----GV--PVVPGSEGEIENE--EEALEIAKEIG-YPVMVKASAGGGGR----GIRIVRSEEELIKAF 181 (447)
T ss_pred HHHHHHHHHHC-----CC--CCCCCcccccCCH--HHHHHHHHHcC-CCEEEEECCCCCCC----eeEEECCHHHHHHHH
Confidence 35678888888 85 555652 34444 77877788886 99999997655555 899999999988887
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++.........+ -..++||++++..+|+-+.+..|..|.++.++
T Consensus 182 ~~~~~~~~~~~~----~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~ 225 (447)
T PRK05586 182 NTAKSEAKAAFG----DDSMYIEKFIENPKHIEFQILGDNYGNVVHLG 225 (447)
T ss_pred HHHHHHHHHhcC----CCeEEEEecCCCCeEEEEEEEECCCCCEEEEe
Confidence 755432111001 13589999999778988999999877666553
No 21
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.38 E-value=3e-05 Score=76.71 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||+|++..+.+. +++...+..++ +|+|+||..-.+++ ||....+.+++.++++
T Consensus 98 dK~~~k~~l~~~-----g--Ip~p~~~~~~~~--~~~~~~~~~~~-~P~ivKP~~g~~s~----Gv~~v~~~~el~~~~~ 163 (304)
T PRK01372 98 DKLRTKLVWQAA-----G--LPTPPWIVLTRE--EDLLAAIDKLG-LPLVVKPAREGSSV----GVSKVKEEDELQAALE 163 (304)
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEEeCc--chHHHHHhhcC-CCEEEeeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 445678888988 8 566688888877 66666777886 89999999865555 7888889999888776
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+... . -..++||++++ ++|+.+.+..|...+.+-.
T Consensus 164 ~~~~--~--------~~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~ 198 (304)
T PRK01372 164 LAFK--Y--------DDEVLVEKYIK-GRELTVAVLGGKALPVIEI 198 (304)
T ss_pred HHHh--c--------CCcEEEEcccC-CEEEEEEEECCCccceEEE
Confidence 6631 1 13589999998 8999999887765554433
No 22
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.37 E-value=2.2e-05 Score=80.48 Aligned_cols=103 Identities=22% Similarity=0.150 Sum_probs=75.6
Q ss_pred HHHHHH-HHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 10 DSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 10 eak~lL-~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
..|++| +++ | ||+++...+++. +++.+++..++ ||+|+||....++| ||.+..|.+|+.++++.+
T Consensus 116 ~~k~~l~~~~-----g--ip~p~~~~~~s~--~~l~~~~~~~g-~P~VvKP~~g~~s~----Gv~~v~~~~el~~~~~~~ 181 (395)
T PRK09288 116 GIRRLAAEEL-----G--LPTSPYRFADSL--EELRAAVEEIG-YPCVVKPVMSSSGK----GQSVVRSPEDIEKAWEYA 181 (395)
T ss_pred HHHHHHHHhC-----C--CCCCCceEECCH--HHHHHHHHhcC-CCEEEEeCCCcCCC----CeEEECCHHHHHHHHHHH
Confidence 345555 356 8 566688888776 78877777886 99999998655555 899999999999988876
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
..... . .-..+|||++++.+.|+.+.+..|..+....+
T Consensus 182 ~~~~~---~---~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~ 219 (395)
T PRK09288 182 QEGGR---G---GAGRVIVEEFIDFDYEITLLTVRAVDGGTHFC 219 (395)
T ss_pred Hhhcc---c---cCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe
Confidence 53211 0 11458999999988999999888876444433
No 23
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.36 E-value=2.8e-06 Score=88.56 Aligned_cols=101 Identities=19% Similarity=0.107 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-..+|++|+++ | ||+++...+++. +|+.+.+..++ +|+|+||....++| ||.++.+.+|+.++++
T Consensus 108 dK~~~K~~l~~~-----g--Ipt~~~~~~~~~--~ea~~~~~~~~-~PvVVKp~~~~~gk----GV~vv~~~eel~~a~~ 173 (426)
T PRK13789 108 SKHFAKSLMKEA-----K--IPTASYKTFTEY--SSSLSYLESEM-LPIVIKADGLAAGK----GVTVATEKKMAKRALK 173 (426)
T ss_pred CHHHHHHHHHHc-----C--CCCCCeEeeCCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 456788999999 8 566687777765 78887777886 89999999887777 8999999999999999
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+++..... +. .-..++||+++. +.|+.+.+..|..
T Consensus 174 ~~~~~~~~--g~--~~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 174 EIFKDKKF--GQ--SGNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred HHHhhccc--cC--CCCeEEEEECcC-CeEEEEEEEECCC
Confidence 98642211 11 124699999999 5899999888753
No 24
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=98.36 E-value=6.9e-06 Score=77.68 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEe--eCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVT--ESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~--~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
..+++++.+. | +|++++... ++ .+|+.++++.+| |||++||-.--||| |.++..+.+++.++.+
T Consensus 3 ~~~~~~~~~~-----g--vp~~pg~~~~~~~--~eea~~~a~~iG-yPVliKas~ggGG~----gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 3 IRFRKLAKKL-----G--VPVPPGSTVPISS--VEEALEFAEEIG-YPVLIKASAGGGGR----GMRIVHNEEELEEAFE 68 (211)
T ss_dssp HHHHHHHHHT-----T---BBSSBESSSBSS--HHHHHHHHHHH--SSEEEEETTSSTTT----SEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHC-----C--CCcCCCCCCCCCC--HHHHHHHHHhcC-CceEEeeccccccc----ccccccchhhhhhhhh
Confidence 3578899998 8 566677665 44 499999999997 99999998877777 8999999999998887
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
.........- .-..++||+++...+|+=+=+..|..|-++.+|
T Consensus 69 ~~~~~s~~~f----g~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~ 111 (211)
T PF02786_consen 69 RAQRESPAAF----GDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLG 111 (211)
T ss_dssp HHHHHHHHHH----STS-EEEEE--SSEEEEEEEEEEETTSEEEEEE
T ss_pred hccccCcccc----ccceEEEeeehhhhhhhhhhhhhccccceeeee
Confidence 7654332100 135689999999878999999999987555543
No 25
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.36 E-value=3.5e-06 Score=88.01 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-..+|++|+++ | ||++++..+++. +++.+....++ +|+||||+...++| ||.+..+.+|+.+++.
T Consensus 102 dK~~~K~~l~~~-----G--Iptp~~~~~~~~--~e~~~~~~~~g-~PvVVKp~~~~~Gk----GV~iv~~~~el~~a~~ 167 (434)
T PLN02257 102 SKNFMKDLCDKY-----K--IPTAKYETFTDP--AAAKKYIKEQG-APIVVKADGLAAGK----GVVVAMTLEEAYEAVD 167 (434)
T ss_pred CHHHHHHHHHHc-----C--CCCCCeEEeCCH--HHHHHHHHHcC-CCEEEEcCCCCCCC----CEEEECCHHHHHHHHH
Confidence 445688999999 8 566688777765 78877777886 89999999877777 9999999999999998
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+++..... + .....++||+++. +.|+.+.+..|..
T Consensus 168 ~~~~~~~f--g--~~~~~vlIEefi~-G~E~Sv~~~~dG~ 202 (434)
T PLN02257 168 SMLVKGAF--G--SAGSEVVVEEFLD-GEEASFFALVDGE 202 (434)
T ss_pred HHHhhhhc--c--CCCCeEEEEECCC-CCEEEEEEEECCC
Confidence 87643221 1 1235699999998 5699998788854
No 26
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.36 E-value=1.8e-05 Score=80.69 Aligned_cols=100 Identities=23% Similarity=0.175 Sum_probs=71.9
Q ss_pred HHHHHH-HHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 10 DSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 10 eak~lL-~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
..|+++ +++ | ||++++..+++. +++.+++..++ ||+|+||-...++| ||.+..+.+++.++++..
T Consensus 103 ~~~~~~~~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~g-~P~VvKP~~g~~s~----gv~~v~~~~el~~~~~~~ 168 (380)
T TIGR01142 103 GIRRLAAEEL-----G--LPTSRYMFADSL--DELREAVEKIG-YPCVVKPVMSSSGK----GQSVVRGPEDIEKAWEYA 168 (380)
T ss_pred HHHHHHHHHC-----C--CCCCCceEeCCH--HHHHHHHHHcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHHHH
Confidence 344543 566 8 566688888765 77777777886 99999997655444 899999999999888876
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCce
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT 129 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~ 129 (423)
..... ..-..+|||++++.+.|+.+.+.++.+|.+
T Consensus 169 ~~~~~------~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~ 203 (380)
T TIGR01142 169 QEGAR------GGAGRVIVEEFIDFDYEITLLTVRHVDGNT 203 (380)
T ss_pred Hhhcc------CCCCCEEEEEecCCCEEEEEEEEEcCCCCE
Confidence 43211 011358999999977899887777665543
No 27
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.31 E-value=4.8e-06 Score=86.38 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +++.+.+..++ +|+|+||....|+| ||.+..|.+|+.++++
T Consensus 102 dK~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~~-~P~VvKP~~~~gs~----Gv~~v~~~~el~~~~~ 167 (420)
T PRK00885 102 SKAFAKDFMARY-----G--IPTAAYETFTDA--EEALAYLDEKG-APIVVKADGLAAGK----GVVVAMTLEEAKAAVD 167 (420)
T ss_pred CHHHHHHHHHHc-----C--CCCCCeEEeCCH--HHHHHHHHHcC-CCEEEEeCCCCCCC----cEEEeCCHHHHHHHHH
Confidence 335678888888 8 566688887766 77777777886 89999998776666 8999999999999988
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+++..... + ..-..+|||++++ +.|+.+.+..|..
T Consensus 168 ~~~~~~~~--~--~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 168 DMLAGNKF--G--DAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred HHhhcccc--c--CCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 87643211 1 1124699999998 6899999998764
No 28
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.31 E-value=1.6e-05 Score=83.96 Aligned_cols=107 Identities=10% Similarity=0.153 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEE--eeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQV--TESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~--~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
-+..|++|.++ || |++++.. .++ .+++.+.+..+| ||||+||-...|+| ||.+..+.+|+.+++
T Consensus 115 K~~~r~~l~~~-----GI--p~pp~~~~~~~~--~~e~~~~~~~ig-yPvvvKp~~ggGg~----Gv~~v~~~~eL~~a~ 180 (472)
T PRK07178 115 KTEARRAMIKA-----GV--PVTPGSEGNLAD--LDEALAEAERIG-YPVMLKATSGGGGR----GIRRCNSREELEQNF 180 (472)
T ss_pred HHHHHHHHHHC-----CC--CCCCCcCcCCCC--HHHHHHHHHHcC-CcEEEEeCCCCCCC----CceEeCCHHHHHHHH
Confidence 45678888888 85 5545542 333 378888888886 99999997765666 899999999999887
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+..........+ ...++||+++...+|+-+.+..|..|.++.+
T Consensus 181 ~~~~~~~~~~~~----~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~ 223 (472)
T PRK07178 181 PRVISEATKAFG----SAEVFLEKCIVNPKHIEVQILADSHGNVVHL 223 (472)
T ss_pred HHHHHHHHHhcC----CCCEEEEEcCCCCeEEEEEEEEECCCCEEEE
Confidence 765432221011 2358999999888898899999987765543
No 29
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.31 E-value=3.3e-06 Score=86.67 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-.-+|++|+++ | ||++++..+++. +++.+++..++ +|+|+||....++| ||.+..|.+|+.++.+
T Consensus 67 dK~~~k~~l~~~-----g--Iptp~~~~~~~~--~ea~~~~~~~g-~PvVvKp~~~~~gk----GV~iv~~~~el~~a~~ 132 (379)
T PRK13790 67 SKLFAKKIMEKY-----N--IPTADYKEVERK--KDALTYIENCE-LPVVVKKDGLAAGK----GVIIADTIEAARSAIE 132 (379)
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEECCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 445678899998 8 566688777765 77877777886 99999999877666 8999999999999998
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
++++... -..++||+++. +.|+-+.+..|..
T Consensus 133 ~~~~~~~--------~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 133 IMYGDEE--------EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred HHHhcCC--------CCeEEEEEccc-CceEEEEEEeeCC
Confidence 8763211 13589999998 5899999888754
No 30
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.31 E-value=1.3e-05 Score=92.92 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCc-eEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICS-AQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~-~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
+-+..|++|+++ || |+++ ..++++. +|+.+++..++ ||||+||....|+| ||.++.+.+|+.+++
T Consensus 114 DK~~ar~ll~~~-----GV--Pt~p~~~lv~s~--dea~~~a~~ig-yPvVVKP~~ggGG~----GV~iv~~~eEL~~a~ 179 (1201)
T TIGR02712 114 LKHTARELAEAA-----GV--PLLPGTGLLSSL--DEALEAAKEIG-YPVMLKSTAGGGGI----GMQKCDSAAELAEAF 179 (1201)
T ss_pred CHHHHHHHHHHC-----CC--CCCCceeecCCH--HHHHHHHHhcC-CeEEEEECCCCCCC----CEEEECCHHHHHHHH
Confidence 446788888888 85 5434 4455655 78888888886 99999998876666 899999999999887
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+..........+ -.+++||++++.++|+-+.+..|..+.++.++
T Consensus 180 ~~~~~~~~~~f~----~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg 223 (1201)
T TIGR02712 180 ETVKRLGESFFG----DAGVFLERFVENARHVEVQIFGDGKGKVVALG 223 (1201)
T ss_pred HHHHHHHHHhcC----CCcEEEEecCCCCEEEEEEEEECCCCeEEEee
Confidence 776432111001 23589999999889999999999887776654
No 31
>PRK08462 biotin carboxylase; Validated
Probab=98.30 E-value=2.1e-05 Score=82.25 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
-+..|++|.+. || |++++. .+++. +++.+++..++ +|+++||....|++ ||.+..+.+++.+++
T Consensus 118 K~~~r~~l~~~-----gI--p~pp~~~~~~~~~--~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~~v~~~~eL~~~~ 183 (445)
T PRK08462 118 KSKAKEVMKRA-----GV--PVIPGSDGALKSY--EEAKKIAKEIG-YPVILKAAAGGGGR----GMRVVEDESDLENLY 183 (445)
T ss_pred HHHHHHHHHHC-----CC--CCCCCcccccCCH--HHHHHHHHHcC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHH
Confidence 35677788887 85 554543 34444 78888888886 99999998766666 899999999998877
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
...........+ -..++||++++.++|+-+.+..|..|.++.++
T Consensus 184 ~~~~~~~~~~~~----~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g 227 (445)
T PRK08462 184 LAAESEALSAFG----DGTMYMEKFINNPRHIEVQILGDKHGNVIHVG 227 (445)
T ss_pred HHHHHHHHhccC----CCcEEEeccCCCCeEEEEEEEECCCCCEEEEE
Confidence 654322111001 12589999998788988988888777665553
No 32
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.29 E-value=4.7e-05 Score=77.10 Aligned_cols=100 Identities=22% Similarity=0.203 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEeCCHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
+-+..|++|+++ | ||+++...+++. +++.+++..++ +|+|+||... .++| ||.+..+.+|+.+++
T Consensus 98 dK~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~~g~~g~----Gv~~v~~~~el~~a~ 163 (352)
T TIGR01161 98 DRLTQKQFLQKL-----G--LPVPPFLVIKDE--EELDAALQELG-FPVVLKARTGGYDGR----GQYRIRNEADLPQAA 163 (352)
T ss_pred CHHHHHHHHHHc-----C--CCCCCccEeCCH--HHHHHHHHHcC-CCEEEEeCCCCCCCC----CEEEECCHHHHHHHH
Confidence 345567888888 8 566688888776 77877778886 8999999864 2444 899999999998887
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+++.. ..++||++++.+.|+.+.+.++..|.+..+
T Consensus 164 ~~~~~------------~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~ 198 (352)
T TIGR01161 164 KELGD------------RECIVEEFVPFERELSVIVARSADGETAFY 198 (352)
T ss_pred HhcCC------------CcEEEEecCCCCeEEEEEEEEcCCCCEEEE
Confidence 76421 258999999988999888888776655444
No 33
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.28 E-value=2.2e-05 Score=82.84 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+..|++|.++ || |++++. .+++. +++.+++.++| ||||+||....|+| ||.+..+.+|+.++
T Consensus 118 DK~~~r~~l~~~-----GI--p~~p~~~~~v~~~--~e~~~~~~~ig-yPvvvKp~~gggg~----Gv~~v~~~~eL~~a 183 (467)
T PRK12833 118 DKARARRTARRA-----GV--PTVPGSDGVVASL--DAALEVAARIG-YPLMIKAAAGGGGR----GIRVAHDAAQLAAE 183 (467)
T ss_pred CHHHHHHHHHHc-----CC--CCCCCcCcCcCCH--HHHHHHHHHhC-CCEEEEECCCCCCC----eEEEECCHHHHHHH
Confidence 446778889998 85 555653 44554 78888888886 99999998765555 99999999999988
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
+......... .. .-..++||++++.++|+-+.+..|..+
T Consensus 184 ~~~~~~~~~~--~~--~~~~vlvEefi~~~~ei~v~v~~dg~~ 222 (467)
T PRK12833 184 LPLAQREAQA--AF--GDGGVYLERFIARARHIEVQILGDGER 222 (467)
T ss_pred HHHHHHHHHH--hc--CCCcEEEEecCCCCEEEEEEEEeCCCc
Confidence 7765332111 00 123589999999889999999888654
No 34
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.25 E-value=6.2e-05 Score=78.78 Aligned_cols=108 Identities=11% Similarity=0.114 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCce--EEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSA--QVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~--~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
=+..|++|+++ || |++++ ..+++. +++.+.+..++ ||||+||....|+| ||.+..+.+|+.+++
T Consensus 116 K~~~r~~l~~~-----gI--p~pp~~~~~v~~~--~~~~~~~~~~g-~PvvvKP~~g~gs~----Gv~iv~~~~el~~~~ 181 (451)
T PRK08591 116 KVTAKATMKKA-----GV--PVVPGSDGPVDDE--EEALAIAKEIG-YPVIIKATAGGGGR----GMRVVRTEAELEKAF 181 (451)
T ss_pred HHHHHHHHHHc-----CC--CCCCCcccccCCH--HHHHHHHHHcC-CCEEEEECCCCCCc----eEEEECCHHHHHHHH
Confidence 35567788888 85 55454 344444 78878788886 99999997765555 899999999999888
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++......... .-..++||++++..+|+.+.+..|..|.++.++
T Consensus 182 ~~~~~~~~~~~----~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~ 225 (451)
T PRK08591 182 SMARAEAKAAF----GNPGVYMEKYLENPRHIEIQVLADGHGNAIHLG 225 (451)
T ss_pred HHHHHHHHHhc----CCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 87643211100 123589999998778988999999877666543
No 35
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.24 E-value=3.2e-05 Score=80.77 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCce--EEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSA--QVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~--~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+..|++|+++ || |++++ ...++ .+++.+++..++ +|+|+||....+++ ||.+..+.+|+.++
T Consensus 115 dK~~~k~~l~~~-----gI--p~p~~~~~~~~~--~~e~~~~~~~~~-~P~VvKP~~g~gs~----Gv~iv~~~~el~~a 180 (450)
T PRK06111 115 SKIEARRAMQAA-----GV--PVVPGITTNLED--AEEAIAIARQIG-YPVMLKASAGGGGI----GMQLVETEQELTKA 180 (450)
T ss_pred CHHHHHHHHHHC-----CC--CCCCCcCcCcCC--HHHHHHHHHHhC-CCEEEEeCCCCCCc----eEEEECCHHHHHHH
Confidence 345678888888 85 54453 33344 377877777886 99999998876666 89999999999988
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
++..........+ -..++||++++..+|+.+.+..|..|..+.+
T Consensus 181 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~ 224 (450)
T PRK06111 181 FESNKKRAANFFG----NGEMYIEKYIEDPRHIEIQLLADTHGNTVYL 224 (450)
T ss_pred HHHHHHHHHHhcC----CCcEEEEcccCCCcEEEEEEEEcCCCCEEEE
Confidence 8775321110001 1258999999977888888888877655544
No 36
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.23 E-value=7.2e-05 Score=76.53 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
+.-|++|+++ | ||++++..+++. +++.+++..+| +|+|+||-.. .++| ||.+..+.+|+..++..
T Consensus 102 ~~~k~~l~~~-----G--ip~p~~~~v~s~--~~l~~~~~~~g-~P~vlKp~~~g~~g~----Gv~~v~~~~el~~a~~~ 167 (372)
T PRK06019 102 LTEKQFLDKL-----G--IPVAPFAVVDSA--EDLEAALADLG-LPAVLKTRRGGYDGK----GQWVIRSAEDLEAAWAL 167 (372)
T ss_pred HHHHHHHHHC-----C--CCCCCceEeCCH--HHHHHHHHHcC-CcEEEEeCCCCcCCC----CeEEECCHHHHHHHHHh
Confidence 4457777777 8 566688888776 78877777886 9999998753 3344 89999999998888776
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+. -..++||++++.+.|+.+.+.+|..|.+..+.
T Consensus 168 ~~------------~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p 201 (372)
T PRK06019 168 LG------------SVPCILEEFVPFEREVSVIVARGRDGEVVFYP 201 (372)
T ss_pred cC------------CCCEEEEecCCCCeEEEEEEEECCCCCEEEeC
Confidence 51 03489999999889999988888877665553
No 37
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.20 E-value=1.1e-05 Score=83.80 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCc-EEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~p-vVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
+-+..|++|+++ | ||++++..+++. +++.+.+..++ +| +|+||+...|+| ||.+..+.+++.+++
T Consensus 104 dK~~~k~~l~~~-----g--Ip~p~~~~~~~~--~~~~~~~~~~g-~P~~VvKp~~~~gg~----Gv~~v~~~~el~~~~ 169 (423)
T TIGR00877 104 SKAFAKDFMKRY-----G--IPTAEYEVFTDP--EEALSYIQEKG-APAIVVKADGLAAGK----GVIVAKTNEEAIKAV 169 (423)
T ss_pred CHHHHHHHHHHC-----C--CCCCCeEEECCH--HHHHHHHHhcC-CCeEEEEECCCCCCC----CEEEECCHHHHHHHH
Confidence 345678888888 8 566688888776 78888888886 89 999998776666 899999999999988
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
++++...+ + .....++||++++ +.|+.+.+..|..
T Consensus 170 ~~~~~~~~---g--~~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 170 EEILEQKF---G--DAGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred HHHHHHhc---C--CCCCeEEEEECcc-CceEEEEEEEcCC
Confidence 88765321 1 1234699999999 5899999998764
No 38
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.19 E-value=6.9e-05 Score=79.30 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEE-eeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQV-TESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~-~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
-+..|++|.++ || |++++.. ....+.+++.+.+..+| |||++||..-.|+| ||.+..+.+|+..++.
T Consensus 115 K~~~k~~l~~~-----gI--pvpp~~~~~~~~~~~~~~~~~~~ig-yPvvvKP~~ggGg~----Gv~iv~~~~eL~~a~~ 182 (478)
T PRK08463 115 KNIARYLMKKN-----GI--PIVPGTEKLNSESMEEIKIFARKIG-YPVILKASGGGGGR----GIRVVHKEEDLENAFE 182 (478)
T ss_pred HHHHHHHHHHc-----CC--CCCCCccccCCCCHHHHHHHHHHhC-CCEEEEeCCCCCCC----ceEEeCCHHHHHHHHH
Confidence 35678888888 85 5545332 21113477877888886 99999997765666 8999999999888776
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
..........+ -..++||+++...+|+-+.+..|..|.++.++
T Consensus 183 ~~~~~a~~~~~----~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~ 225 (478)
T PRK08463 183 SCKREALAYFN----NDEVFMEKYVVNPRHIEFQILGDNYGNIIHLC 225 (478)
T ss_pred HHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 54221110001 13589999998778888888888777665554
No 39
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.18 E-value=9.9e-05 Score=79.81 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEeCCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
=+..|++|+++ | ||++++..+++. +++.++...+| ||+|+||... .++| |+.+..+.+|+.++++
T Consensus 122 K~~~K~~l~~~-----G--Iptp~~~~v~~~--~el~~~~~~ig-~P~VvKP~~ggs~g~----Gv~~v~~~~eL~~a~~ 187 (577)
T PLN02948 122 KYAQKVHFSKH-----G--IPLPEFMEIDDL--ESAEKAGDLFG-YPLMLKSRRLAYDGR----GNAVAKTEEDLSSAVA 187 (577)
T ss_pred HHHHHHHHHHC-----C--cCCCCeEEeCCH--HHHHHHHHhcC-CcEEEEeCCCCCCCC----CeEEECCHHHHHHHHH
Confidence 35567888888 8 566688887765 77777778886 9999999764 2455 7888899999988877
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
.+... -..++||++++..+|+.+.+.+|..|.+..+
T Consensus 188 ~~~~~----------~~~vlvEefI~~~~EisV~v~r~~~G~i~~~ 223 (577)
T PLN02948 188 ALGGF----------ERGLYAEKWAPFVKELAVMVARSRDGSTRCY 223 (577)
T ss_pred HhhCC----------CCcEEEEecCCCCeEEEEEEEECCCCCEEEe
Confidence 65321 1247999999988999999998877755544
No 40
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.16 E-value=5.7e-05 Score=74.89 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
.+-+-.|++|+++ || |+|++....+. . .....++ +|+|+||-.- +.+. ||.+..+.+|+..+.
T Consensus 97 ~DK~~~k~~l~~~-----gI--ptp~~~~~~~~--~---~~~~~~~-~P~vVKP~~g--gss~--Gv~~v~~~~eL~~a~ 159 (296)
T PRK14569 97 MDKMISKEILMHH-----RM--PTPMAKFLTDK--L---VAEDEIS-FPVAVKPSSG--GSSI--ATFKVKSIQELKHAY 159 (296)
T ss_pred HCHHHHHHHHHHC-----CC--CCCCeEEEchh--h---hhHhhcC-CCEEEEeCCC--CCCc--CeEEcCCHHHHHHHH
Confidence 3446789999999 85 55577665432 1 1234565 9999999764 2332 688889999998887
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
++... . ..+|||++++ ++|+.+++..|..
T Consensus 160 ~~~~~------~-----~~~lvEefI~-G~E~tv~vl~~~~ 188 (296)
T PRK14569 160 EEASK------Y-----GEVMIEQWVT-GKEITVAIVNDEV 188 (296)
T ss_pred HHHHh------c-----CCEEEEcccc-cEEEEEEEECCcC
Confidence 76421 1 2489999998 7999999986654
No 41
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.12 E-value=0.00011 Score=77.30 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccc--cCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPW--LSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~--lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
.+=..+|+++++. | ||++++......+.+++.+++.. +| +||||||-.--+++ ||.+..+.+|+..
T Consensus 141 mDK~~tK~l~~~a-----G--IPtpp~~~~~~~~~eel~~~~~~~~IG-yPvVVKP~~GGSS~----GV~~Vkn~eELe~ 208 (493)
T PRK06524 141 DSKIVTTRLANEA-----G--VPSVPHVLGRVDSYDELSALAHGAGLG-DDLVVQTPYGDSGS----TTFFVRGQRDWDK 208 (493)
T ss_pred CCHHHHHHHHHHc-----C--CCCCCcccccCCCHHHHHHHHHhccCC-CcEEEEECCCCCCc----CEEEeCCHHHHHH
Confidence 3456778888888 8 56667766422223555555543 86 99999998533233 8999999999988
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceE
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~i 130 (423)
+++++.. -..++||++++ +.|+-|.+.+|..|.++
T Consensus 209 a~~~~~~-----------~~~viVEe~I~-GrEitVev~vd~dG~Vv 243 (493)
T PRK06524 209 YAGGIVG-----------QPEIKVMKRIR-NVEVCIEACVTRHGTVI 243 (493)
T ss_pred HHHHhcC-----------CCCEEEEeccC-cEEEEEEEEEeCCCCEE
Confidence 8766532 13478999997 79999988888766543
No 42
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.10 E-value=1.7e-05 Score=91.39 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=78.9
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
.-|++|+++ | +|++++..+++. +|+.+++..+| +|+||||....+++ |+.+..+.+|+.+++++.+
T Consensus 131 ~~k~~l~~~-----G--Ipvp~~~~v~s~--ee~~~~~~~ig-yPvVVKP~~g~gG~----Gv~iv~~~eEL~~a~~~~~ 196 (1068)
T PRK12815 131 RFRALMKEL-----G--EPVPESEIVTSV--EEALAFAEKIG-FPIIVRPAYTLGGT----GGGIAENLEELEQLFKQGL 196 (1068)
T ss_pred HHHHHHHHc-----C--cCCCCceeeCCH--HHHHHHHHHcC-CCEEEEECcCCCCC----ceEEECCHHHHHHHHHHHH
Confidence 346777777 8 566688888776 78888888886 99999998665555 6778899999999887776
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+. .....+|||++++..+|+.+.+.+|..|.++.+
T Consensus 197 ~~--------s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~ 231 (1068)
T PRK12815 197 QA--------SPIHQCLLEESIAGWKEIEYEVMRDRNGNCITV 231 (1068)
T ss_pred hc--------CCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEE
Confidence 42 123579999999977899999999988755544
No 43
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.08 E-value=2.7e-05 Score=70.36 Aligned_cols=101 Identities=24% Similarity=0.248 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+..++++.++ | +|+|+...+++. +++.+....++ +|+||||..-.+++ ||.+..|.+++.+++.++
T Consensus 6 ~~~~~~~~~~-----g--v~~P~~~~~~~~--~~~~~~~~~~~-~p~vvKp~~g~gs~----gv~~~~~~~~l~~~~~~~ 71 (184)
T PF13535_consen 6 YRMRELLKKA-----G--VPVPKTRIVDSE--EELRAFAEDLG-FPFVVKPVDGSGSR----GVFIVHSPEELEAALAEI 71 (184)
T ss_dssp HHHHHHHHHH-----T--S----EEEECSH--HHHHHHHHHSS-SSEEEEESS-STTT----T-EEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----C--cCCCCEEEECCH--HHHHHHHHHcC-CCEEEEcCccccCC----CEEEeCCHHHHHHHHHHH
Confidence 5668888888 8 556688888876 78888888886 89999998876654 899999999999998887
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEE
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTIS 131 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il 131 (423)
..... .....++||++++ +.|+.+-+..+ .|.++.
T Consensus 72 ~~~~~------~~~~~~ivqe~i~-g~e~~~~~~~~-~G~~~~ 106 (184)
T PF13535_consen 72 REDSP------LGNGPVIVQEYIP-GDEYSVDGVVD-DGEVVF 106 (184)
T ss_dssp HHHHS-------HSSSEEEEE----SEEEEEEEEEE-TTEEEE
T ss_pred HHhcc------cCCccEEEEEeee-eeeEEEEEEEE-cceEEE
Confidence 54321 1135699999999 78999998888 555533
No 44
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.02 E-value=0.00011 Score=84.84 Aligned_cols=95 Identities=16% Similarity=0.278 Sum_probs=74.8
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
.-+++|++. | ||+|++..+++. +|+.+.+..++ |||++||....|++ ||.+..|.+|+.+++++..
T Consensus 672 ~f~~lL~~~-----G--Ip~P~~~~v~s~--ee~~~~~~~ig-yPvIVKP~~~~Gg~----gv~iv~~~eeL~~~l~~a~ 737 (1050)
T TIGR01369 672 KFSELLDEL-----G--IPQPKWKTATSV--EEAVEFASEIG-YPVLVRPSYVLGGR----AMEIVYNEEELRRYLEEAV 737 (1050)
T ss_pred HHHHHHHHC-----C--cCCCCeEEECCH--HHHHHHHHhcC-CCEEEEECCCCCCC----CeEEECCHHHHHHHHHHHH
Confidence 346677777 8 566688888876 88888888886 99999997766666 8889999999998888765
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
... .-..+|||++++.+.|+-+.+..|..
T Consensus 738 ~~s--------~~~~vlVeefI~~G~E~~Vd~l~d~g 766 (1050)
T TIGR01369 738 EVS--------PEHPVLIDKYLEDAVEVDVDAVSDGE 766 (1050)
T ss_pred HhC--------CCCCEEEeecCCCCeEEEEEEEEeCC
Confidence 321 11348999999989999999998863
No 45
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.98 E-value=0.00016 Score=83.77 Aligned_cols=107 Identities=11% Similarity=0.128 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
=+..|+++.++ || |++++. .+.+. +|+.+++..+| |||++||-.-.|+| ||.+..+.+|+.+++
T Consensus 120 K~~~r~~l~~~-----GV--Pv~P~~~~~v~s~--eea~~~a~~iG-yPvVVKP~~GgGGr----Gv~vV~~~eEL~~a~ 185 (1146)
T PRK12999 120 KVAARNAAIKA-----GV--PVIPGSEGPIDDI--EEALEFAEEIG-YPIMLKASAGGGGR----GMRIVRSEEELEEAF 185 (1146)
T ss_pred HHHHHHHHHHC-----CC--CCCCCcccCCCCH--HHHHHHHHHhC-CCEEEEECCCCCCC----CeEEeCCHHHHHHHH
Confidence 35677888888 85 554544 24444 88888888896 99999997765666 899999999998887
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
++.........+ -..++||++++..+|+-+.+..|..|.++.+
T Consensus 186 ~~a~~ea~~~fg----~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l 228 (1146)
T PRK12999 186 ERAKREAKAAFG----NDEVYLEKYVENPRHIEVQILGDKHGNVVHL 228 (1146)
T ss_pred HHHHHHHHhhcC----CCcEEEecCCCCCeEEEEEEEEECCCCEEEE
Confidence 765432111001 1358999999977888888888877766654
No 46
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.96 E-value=0.00019 Score=80.64 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCC----HH-hHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTD----FS-ELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~----~~-ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee 80 (423)
.+=+.+|++|+++ | ||++++..++..+ .+ +..+....++ +|++|||-.. |-| -||.+..+.+|
T Consensus 567 ~DK~~~K~~l~~~-----G--Ipt~~~~~~~~~~~~~~~~~~~~~~~~~lg-~P~iVKP~~~--GsS--~Gv~~v~~~~e 634 (809)
T PRK14573 567 MDKVLTKRFASDV-----G--VPVVPYQPLTLAGWKREPELCLAHIVEAFS-FPMFVKTAHL--GSS--IGVFEVHNVEE 634 (809)
T ss_pred cCHHHHHHHHHHC-----C--CCCCCEEEEechhcccChHHHHHHHHHhcC-CCEEEeeCCC--CCC--CCEEEECCHHH
Confidence 4456789999999 8 5666877765311 12 2234456776 9999999875 233 28999999999
Q ss_pred HHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCc
Q 014514 81 VAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGC 128 (423)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp 128 (423)
+.++.++.+.. . ..+|||+++..++|+-+++..|..+.
T Consensus 635 l~~a~~~a~~~-----~-----~~vlVEe~i~~grEi~v~vl~~~~~~ 672 (809)
T PRK14573 635 LRDKISEAFLY-----D-----TDVFVEESRLGSREIEVSCLGDGSSA 672 (809)
T ss_pred HHHHHHHHHhc-----C-----CcEEEEeccCCCEEEEEEEEeCCCCc
Confidence 99888876421 1 24899999987899999999886553
No 47
>PLN02735 carbamoyl-phosphate synthase
Probab=97.95 E-value=5.9e-05 Score=87.10 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
...|++|+++ | +|++++..+++. +++.+++..+|.|||||||....|++ ||.++.|.+|+.+++++.
T Consensus 146 ~~~k~~l~~~-----G--Ipvp~~~~v~s~--eea~~~~~~iG~yPvVVKP~~~~GG~----Gv~iv~n~eEL~~a~~~a 212 (1102)
T PLN02735 146 ELFKQAMEKI-----G--LKTPPSGIATTL--DECFEIAEDIGEFPLIIRPAFTLGGT----GGGIAYNKEEFETICKAG 212 (1102)
T ss_pred HHHHHHHHHC-----C--CCCCCeeEeCCH--HHHHHHHHHhCCCCEEEEeCCCCCCC----ceEEECCHHHHHHHHHHH
Confidence 4567778887 8 566688888765 78877777885589999998766666 778899999999888776
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEE
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTIS 131 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il 131 (423)
+... ....+|||+++...+|+-+.+.+|..+..+.
T Consensus 213 ~~~s--------~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~ 247 (1102)
T PLN02735 213 LAAS--------ITSQVLVEKSLLGWKEYELEVMRDLADNVVI 247 (1102)
T ss_pred HhcC--------CCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence 4311 2357999999996689999999997765543
No 48
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.95 E-value=0.00036 Score=72.93 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
..+++++++. | ||++++.-....+.+|+.+.+..+| |||+|||-.-.|+| ||+++.+.+++.+++...
T Consensus 117 ~~ar~~~~~a-----G--VP~vpgs~~~~~~~ee~~~~a~~iG-yPVivKa~~GgGg~----G~r~v~~~~el~~a~~~~ 184 (449)
T COG0439 117 ITARRLMAKA-----G--VPVVPGSDGAVADNEEALAIAEEIG-YPVIVKAAAGGGGR----GMRVVRNEEELEAAFEAA 184 (449)
T ss_pred HHHHHHHHHc-----C--CCcCCCCCCCcCCHHHHHHHHHHcC-CCEEEEECCCCCcc----cEEEECCHHHHHHHHHHH
Confidence 5678888888 8 5555665211123489999999997 99999999988888 999999999999999888
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
.+-....-+ -..+++|+++...+=.-+-+.-|..+-+|=.+
T Consensus 185 ~~ea~~~fg----~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~ 225 (449)
T COG0439 185 RGEAEAAFG----NPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLG 225 (449)
T ss_pred HHHHHHhcC----CCcEEeeeeccCCceEEEEEEEcCcccEEEEE
Confidence 764432111 12499999998665444666667766665443
No 49
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.94 E-value=5.5e-05 Score=87.22 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+..|++|.+. | +|++++..+++. +++.+++..+| ||+||||..-.|++ |+.+..+.+|+.+++.+.
T Consensus 129 ~~~k~~l~~~-----G--ipvp~~~~v~s~--~e~~~~~~~ig-yPvIVKP~~g~gg~----Gv~iv~~~eeL~~~~~~~ 194 (1050)
T TIGR01369 129 ELFREAMKEI-----G--EPVPESEIAHSV--EEALAAAKEIG-YPVIVRPAFTLGGT----GGGIAYNREELKEIAERA 194 (1050)
T ss_pred HHHHHHHHHC-----C--CCCCCeeecCCH--HHHHHHHHHhC-CCeEEECCCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 3457777777 8 566688888776 78888888886 99999998665555 788889999999887776
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+.. .....+|||++++..+|+.+.+.+|..+..+.+
T Consensus 195 ~~~--------s~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~ 230 (1050)
T TIGR01369 195 LSA--------SPINQVLVEKSLAGWKEIEYEVMRDSNDNCITV 230 (1050)
T ss_pred Hhc--------CCCCcEEEEEcccCceEEEEEEEEeCCCCEEEE
Confidence 532 123569999999977899999999987666544
No 50
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.91 E-value=0.00026 Score=81.80 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+.+|+++.++ || |++++. .+.+ .+++.+.+..+| |||++||-.-.|+| |+.+..+.+|+.++
T Consensus 115 DK~~ar~la~~~-----GV--Pvpp~t~~~v~~--~eea~~~ae~iG-yPvIVKP~~GGGGr----G~riV~~~eEL~~a 180 (1143)
T TIGR01235 115 DKVAARNLAIKA-----GV--PVVPGTDGPPET--MEEVLDFAAAIG-YPVIIKASWGGGGR----GMRVVRSEADVADA 180 (1143)
T ss_pred CHHHHHHHHHHc-----CC--CCCCCcccCcCC--HHHHHHHHHHcC-CCEEEEECCCCCCC----ccEEeCCHHHHHHH
Confidence 345678888888 85 554643 2334 378888888886 99999996655555 89999999999888
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
++..........+ ...++||++++..+|+-+.+..|..|.++.+
T Consensus 181 ~~~a~~ea~~~fg----~~~vlIEefI~g~reIeVqVlgD~~G~vv~l 224 (1143)
T TIGR01235 181 FQRAKSEAKAAFG----NDEVYVEKLIERPRHIEVQLLGDKHGNVVHL 224 (1143)
T ss_pred HHHHHHHHHHhcC----CCcEEEEEcCCCCeEEEEEEEEeCCCCEEEE
Confidence 7766432111001 1358999999888899999999987766543
No 51
>PLN02735 carbamoyl-phosphate synthase
Probab=97.89 E-value=7.6e-05 Score=86.19 Aligned_cols=102 Identities=12% Similarity=0.207 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
...|++|+++ | ||++++..+++. +|+.+++..+| |||+|||....|+| |+.+..+.+|+..+.++.
T Consensus 704 ~~~k~~l~~~-----G--Ip~p~~~~v~s~--eea~~~a~~iG-yPvvVKP~~g~gG~----G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 704 ERFNAILNEL-----K--IEQPKGGIARSE--ADALAIAKRIG-YPVVVRPSYVLGGR----AMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred HHHHHHHHHc-----C--CCCCCeeEeCCH--HHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHH
Confidence 4567788888 8 566688887765 78888888896 99999998766666 899999999999887776
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
... .+ -..++||++++.++|+-+.+..|..|.+++.
T Consensus 770 ~~~-----~~---~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~ 805 (1102)
T PLN02735 770 VEV-----DP---ERPVLVDKYLSDATEIDVDALADSEGNVVIG 805 (1102)
T ss_pred HHh-----cC---CCCEEEEEecCCcEEEEEEEEECCCCCEEEe
Confidence 431 11 1248999999888999999999987655543
No 52
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=97.89 E-value=0.0011 Score=65.85 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEee-CCC-HHhH--HhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTE-STD-FSEL--TNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~-~~~-~~ea--~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~ 82 (423)
+-+..|++|+++ | ||+|++..++ +.+ .+++ ......++ +|+|+||....+++ ||.+..+.+++.
T Consensus 105 dK~~~~~~l~~~-----g--ip~p~~~~~~~~~~~~~~~~~~~~~~~~~-~P~vvKP~~~~~s~----Gv~~v~~~~el~ 172 (315)
T TIGR01205 105 DKLLTKLLWKAL-----G--LPTPDYIVLTQNRASADELECEQVAEPLG-FPVIVKPAREGSSV----GVSKVKSEEELQ 172 (315)
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEEecccccchhhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHH
Confidence 445678888888 8 5666888776 441 1222 12334565 89999998754444 788889999999
Q ss_pred HHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+++.+.... . ..++||++++ ++|+.+++..+..
T Consensus 173 ~~~~~~~~~-----~-----~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 173 AALDEAFEY-----D-----EEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred HHHHHHHhc-----C-----CcEEEEcCCC-CEEEEEEEECCCC
Confidence 887765421 1 3589999998 8999999887543
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.88 E-value=7.8e-05 Score=86.12 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
..-|++|+++ | +|++++..+++. +|+.+++..+| +|+|+||..-.|++ |+.+..+.+|+.+++++.
T Consensus 130 ~~~k~~l~~~-----G--ipvp~~~~v~s~--~e~~~~~~~ig-~PvVVKP~~g~gg~----Gv~iv~~~eeL~~a~~~~ 195 (1066)
T PRK05294 130 ELFKEAMKKI-----G--LPVPRSGIAHSM--EEALEVAEEIG-YPVIIRPSFTLGGT----GGGIAYNEEELEEIVERG 195 (1066)
T ss_pred HHHHHHHHHC-----C--cCCCCeeeeCCH--HHHHHHHHHcC-CCeEEEcCCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 3457777777 8 566688888776 78888888886 89999998655555 788889999999888765
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+.. .....++||++++..+|+.+.+.+|..|.++.+
T Consensus 196 ~~~--------s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~ 231 (1066)
T PRK05294 196 LDL--------SPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIV 231 (1066)
T ss_pred Hhh--------CCCCeEEEEEcccCceEEEEEEEEcCCCCEEEE
Confidence 431 123468999999977899999999987655544
No 54
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=97.83 E-value=6.4e-05 Score=68.90 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeecc-ccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCc
Q 014514 24 GLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDM-LFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPI 102 (423)
Q Consensus 24 GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv-~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v 102 (423)
| +|+++...+.+. +|+.++...+| +|+|+|+-. -..|| |..+..+.+++.++++.+-.
T Consensus 5 g--ip~~~~~~i~~~--~~l~~a~~~iG-~P~vlK~~~~GYDGk----Gq~~i~~~~dl~~a~~~~~~------------ 63 (172)
T PF02222_consen 5 G--IPTAPYATIDSL--EDLEEAAESIG-FPAVLKTRRGGYDGK----GQFVIRSEEDLEKAWQELGG------------ 63 (172)
T ss_dssp T----B-EEEEESSH--HHHHHHHHHHT-SSEEEEESSSSCTTT----TEEEESSGGGHHHHHHHTTT------------
T ss_pred C--CCCCCeEEECCH--HHHHHHHHHcC-CCEEEEccCcCcCCC----ccEEECCHHHHHHHHHhcCC------------
Confidence 7 677799998887 89999999997 999999544 33344 88888889998888877611
Q ss_pred eeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 103 TTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 103 ~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
..+++|++++..+|+.+-+.+|..|.+..+-
T Consensus 64 ~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp 94 (172)
T PF02222_consen 64 GPCILEEFVPFDREISVIVARDQDGEIRFYP 94 (172)
T ss_dssp SCEEEEE---ESEEEEEEEEEETTSEEEEEE
T ss_pred CcEEEEeccCCcEEEEEEEEEcCCCCEEEEc
Confidence 2479999999999999999999988665553
No 55
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=97.82 E-value=7.4e-05 Score=78.45 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
.=+|.++.+| | ||+.....++++ ++|........++++|+|++.++.|| ||.+..+.+|+-+++++|
T Consensus 110 ~fsK~fm~r~-----~--IPTA~y~~ft~~--e~a~sfi~~~~~~~~ViKAdGLAAGK----GViv~~~~~EA~eAv~sI 176 (788)
T KOG0237|consen 110 NFSKDFMHRH-----N--IPTAKYKTFTDP--EEAKSFIQSATDKALVIKADGLAAGK----GVIVAKSKEEAFEAVDSI 176 (788)
T ss_pred HHHHHHHHhc-----C--CCcceeeeeCCH--HHHHHHHHhCCCcceEEeecccccCC----ceEeeccHHHHHHHHHHH
Confidence 3478899999 7 788888888776 77766666665578999999998788 999999999999999999
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
|..... + ..-..+.|||++. +.|+.+=...|..
T Consensus 177 l~~~~f--g--~AG~tvViEE~LE-GeEvS~laftDG~ 209 (788)
T KOG0237|consen 177 LVKKVF--G--SAGKTVVIEELLE-GEEVSFLAFTDGY 209 (788)
T ss_pred Hhhhhh--c--cccceEehhhhcC-cceEEEEEEecCc
Confidence 987664 3 2346799999998 7898888888865
No 56
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.78 E-value=0.00017 Score=75.43 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceE-EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe----CCHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQ-VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN----LDLAQVA 82 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~-~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~----~~~ee~~ 82 (423)
-+..|++|.++ | ||+++.+ .+.+. +|+..++..++ +|||+||.-..|+| ||.++ .+.+++.
T Consensus 106 K~~~k~~l~~~-----g--Iptp~~~~~~~~~--~e~~~~~~~~~-~PvVVKP~~~sggk----GV~v~~~~~~~~~ea~ 171 (435)
T PRK06395 106 KMFMRYLMERH-----N--IPGNINFNACFSE--KDAARDYITSM-KDVAVKPIGLTGGK----GVKVTGEQLNSVDEAI 171 (435)
T ss_pred HHHHHHHHHHC-----C--cCCCcccceeCCh--HHHHHHHHhhC-CCEEEEeCCCCCCC----CeEEecCchhhHHHHH
Confidence 34567888888 8 4554433 44443 67777666775 89999999888888 89887 3445666
Q ss_pred HHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
.++.++... ...++|||++. |.|+-+-+..|...
T Consensus 172 ~~~~~~~~~----------~~~viIEEfl~-G~E~Svd~~~dg~~ 205 (435)
T PRK06395 172 RYAIEILDR----------DGVVLIEKKMT-GEEFSLQAFSDGKH 205 (435)
T ss_pred HHHHHHhCC----------CCcEEEEeecC-CceEEEEEEEcCCe
Confidence 665554311 13489999997 77999999987644
No 57
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.78 E-value=9.6e-05 Score=83.55 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe-CCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~-~~~ee~~~a~~ 86 (423)
-+.+|++|+++ | ||+|++..+++. +++.+++..++ +|+|+||..-.+++ ||.++ .+.+++.++++
T Consensus 214 K~~tk~lL~~~-----G--IpvP~~~~~~s~--~ea~~~~~~ig-~PvVVKP~~g~~G~----GV~l~v~s~~el~~a~~ 279 (864)
T TIGR02068 214 KDLTKEILSDA-----G--VPVPEGTVVQSA--EDAWEAAQDLG-YPVVIKPYDGNHGR----GVTINILTRDEIESAYE 279 (864)
T ss_pred HHHHHHHHHHc-----C--cCCCCEEEECCH--HHHHHHHHHcC-CCEEEEECCCCCcc----CEEEEeCCHHHHHHHHH
Confidence 35689999999 8 566688888776 88888888896 99999998753333 89984 78999888877
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEE
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~ 122 (423)
..... -..+|||++++ +.|+.+.+.
T Consensus 280 ~a~~~----------~~~vlVEefI~-G~e~rvlVv 304 (864)
T TIGR02068 280 AAVEE----------SSGVIVERFIT-GRDHRLLVV 304 (864)
T ss_pred HHHhh----------CCcEEEEEecc-CCEEEEEEE
Confidence 65321 13589999998 688877654
No 58
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.77 E-value=9.4e-05 Score=82.08 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe-CCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~-~~~ee~~~a~~ 86 (423)
-..+|++|+++ | ||+|++..+.+. +++.+++..+| +|||+||..-.++| ||.++ .+.+++.++++
T Consensus 215 K~~tk~lL~~~-----G--IPvP~~~~v~s~--~~a~~~a~~iG-~PvVVKP~~G~~G~----GV~~~v~~~~el~~a~~ 280 (727)
T PRK14016 215 KELTKRLLAAA-----G--VPVPEGRVVTSA--EDAWEAAEEIG-YPVVVKPLDGNHGR----GVTVNITTREEIEAAYA 280 (727)
T ss_pred HHHHHHHHHHC-----C--cCCCCeeEeCCH--HHHHHHHHHcC-CCEEEEECCCCCCC----ceEEecCCHHHHHHHHH
Confidence 35678999999 8 566688888776 88888888996 99999998643333 89984 78999888877
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEE
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVS 123 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~ 123 (423)
..... + ..++||++++ +.|+.+.+.-
T Consensus 281 ~a~~~-----~-----~~viVEe~I~-G~d~Rv~Vvg 306 (727)
T PRK14016 281 VASKE-----S-----SDVIVERYIP-GKDHRLLVVG 306 (727)
T ss_pred HHHHh-----C-----CeEEEEEecC-CceEEEEEEC
Confidence 66321 1 4689999998 7888876543
No 59
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.77 E-value=0.00015 Score=76.89 Aligned_cols=101 Identities=17% Similarity=0.104 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCC-ceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHH------
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQIC-SAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA------ 79 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~-~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~e------ 79 (423)
+-..+|++|+++ | ||++ ....+++. +++.+.+... +|||+||....++| ||.++.+.+
T Consensus 109 dK~~~K~~l~~~-----g--Ipt~~~~~~~~~~--~ea~~~~~~~--~PvVVKP~~~aggk----GV~iv~~~~e~~~~~ 173 (486)
T PRK05784 109 SKVWARELMWKY-----S--IPGRLRYKVFYDV--EEAAKFIEYG--GSVAIKPARQAGGK----GVKVIADLQAYLSQE 173 (486)
T ss_pred CHHHHHHHHHHc-----C--cCCCccceEeCCH--HHHHHHHhhc--CCEEEeeCCCCCCC----CEEEECChhHhcchh
Confidence 445678899998 8 5654 45555554 7787776554 59999999988888 999998876
Q ss_pred --HHH-HHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 80 --QVA-EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 80 --e~~-~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
++. +++++++..... .+ ..-..+||||++. |.|+.+.+..|..
T Consensus 174 ~~ea~~~a~~~~~~~~~~-~g--~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 174 KREALTKSVNDIKEGSAY-YK--DVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred HHHHHHHHHHHHHHhHhh-cc--CCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 333 444555432110 01 1235799999999 7899999998754
No 60
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.77 E-value=0.00027 Score=66.48 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=62.4
Q ss_pred HHHHhhhccCCCCCcCCceEEeeCCCHHhH--HhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhcc
Q 014514 14 LLKEHLKRLAGLDLQICSAQVTESTDFSEL--TNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGT 91 (423)
Q Consensus 14 lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea--~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~ 91 (423)
||++. | ||++++.++...+.... .+....++ +|++|||-.. |-|. ||....+.+++..+..+...
T Consensus 1 l~~~~-----g--I~tp~~~~~~~~~~~~~~~~~~~~~l~-~P~~VKP~~~--GsS~--Gi~~v~~~~el~~ai~~~~~- 67 (203)
T PF07478_consen 1 LLKSA-----G--IPTPPYVVVKKNEDDSDSIEKILEDLG-FPLFVKPASE--GSSI--GISKVHNEEELEEAIEKAFK- 67 (203)
T ss_dssp HHHHT-----T---BB-SEEEEETTSHHHHHHHHHHHHHS-SSEEEEESST--STTT--TEEEESSHHHHHHHHHHHTT-
T ss_pred Chhhc-----C--CCCCCEEEEecccccchhHHHHHhhcC-CCEEEEECCC--CccE--EEEEcCCHHHHHHHHHHHhh-
Confidence 45666 8 56669999887643322 24456776 9999998864 2222 68888999999988887642
Q ss_pred chhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 92 EVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 92 ~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
. -..+|||++++ |+|+.+|+.-+..
T Consensus 68 -~--------~~~vlVEefI~-G~E~tv~vl~~~~ 92 (203)
T PF07478_consen 68 -Y--------DDDVLVEEFIS-GREFTVGVLGNGE 92 (203)
T ss_dssp -T--------HSEEEEEE--S-SEEEEEEEEESSS
T ss_pred -h--------cceEEEEeeec-ccceEEEEEecCC
Confidence 1 13699999995 9999999998654
No 61
>PRK07206 hypothetical protein; Provisional
Probab=97.72 E-value=0.00025 Score=73.28 Aligned_cols=98 Identities=19% Similarity=0.086 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCC---cEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSS---RLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~---pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
+.-+++|.+. | +|+|+...+++. +++.+.+..++ + |+||||-...|++ ||.+..|.+|+++++
T Consensus 110 ~~~r~~l~~~-----g--i~~p~~~~~~~~--~e~~~~~~~~g-~~~~P~VvKP~~g~gs~----gv~~v~~~~el~~~~ 175 (416)
T PRK07206 110 AEMINALAEA-----G--LPAARQINTADW--EEAEAWLRENG-LIDRPVVIKPLESAGSD----GVFICPAKGDWKHAF 175 (416)
T ss_pred HHHHHHHHHc-----C--CCcccEEecCCH--HHHHHHHHhcC-CCCCCEEEeCCCCCCCC----CEEEeCCHHHHHHHH
Confidence 4456677777 8 566688777765 77777777765 6 9999997766655 899999999999998
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEc
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D 124 (423)
+++.+.... ....-..+|||++++ +.|+.+.....
T Consensus 176 ~~~~~~~~~---~~~~~~~~lvEe~i~-G~E~sv~~~~~ 210 (416)
T PRK07206 176 NAILGKANK---LGLVNETVLVQEYLI-GTEYVVNFVSL 210 (416)
T ss_pred HHHHhcccc---CCCCCCeEEEEEccc-cEEEEEEEEEE
Confidence 887643211 011235799999998 78998887753
No 62
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.69 E-value=0.00096 Score=77.21 Aligned_cols=92 Identities=16% Similarity=0.303 Sum_probs=71.2
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
.-+++|.++ | ||+|++..+++. +|+.+.+..+| ||||+||....|+| ||.+..+.+|+++++++..
T Consensus 673 ~f~~ll~~~-----G--Ip~P~~~~~~s~--ee~~~~~~~ig-yPvVVKP~~~~Gg~----gv~iv~~~eeL~~~l~~~~ 738 (1068)
T PRK12815 673 RFYQLLDEL-----G--LPHVPGLTATDE--EEAFAFAKRIG-YPVLIRPSYVIGGQ----GMAVVYDEPALEAYLAENA 738 (1068)
T ss_pred HHHHHHHHc-----C--cCCCCeEEeCCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHHhh
Confidence 346667776 8 566688888876 88888888886 99999997666666 8999999999988877661
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
. .-..+|||++++ +.|+-+.+..|..
T Consensus 739 s----------~~~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 739 S----------QLYPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred c----------CCCCEEEEEeec-CceEEEEEEEcCC
Confidence 1 113589999996 6799999988864
No 63
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.65 E-value=0.00033 Score=70.57 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCH--HhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF--SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~--~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
.+-+..|++|+++ | ||++++..+.+.+. .........++ +|+|+||-...+.+ ||.+..+.+++.+
T Consensus 122 ~DK~~~k~~l~~~-----G--Ip~p~~~~~~~~~~~~~~~~~~~~~~~-~P~vVKP~~~gsS~----Gv~~v~~~~el~~ 189 (333)
T PRK01966 122 MDKILTKRLLAAA-----G--IPVAPYVVLTRGDWEEASLAEIEAKLG-LPVFVKPANLGSSV----GISKVKNEEELAA 189 (333)
T ss_pred hCHHHHHHHHHHc-----C--CCCCCEEEEeccccchhhHHHHHHhcC-CCEEEEeCCCCCcc----CEEEECCHHHHHH
Confidence 4556789999998 8 56668877765521 11233445675 89999997653333 8888999999998
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEc
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D 124 (423)
++.+.... . ..+|||++++ ++|+-+++..+
T Consensus 190 a~~~~~~~-----~-----~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 190 ALDLAFEY-----D-----RKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HHHHHHhc-----C-----CcEEEEcCcC-CEEEEEEEECC
Confidence 88776421 1 3699999999 79999999876
No 64
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.65 E-value=0.00033 Score=79.54 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+.-|++|+++ | +|+|+...+++. +++.+.+..++ ||+|+||-.-.|++ ||.++.|.+|+.+++.++
T Consensus 109 ~~~r~~L~~~-----G--Ip~P~~~~v~~~--~e~~~~~~~~~-~PvVVKP~~g~gS~----GV~~v~~~~el~~a~~~~ 174 (887)
T PRK02186 109 KRLARTLRDH-----G--IDVPRTHALALR--AVALDALDGLT-YPVVVKPRMGSGSV----GVRLCASVAEAAAHCAAL 174 (887)
T ss_pred HHHHHHHHHc-----C--CCCCCEEEeCCH--HHHHHHHHhCC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 4456777777 8 566688887766 77777777786 99999997766555 899999999999888777
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
.... -..++||++++ |.|+.+.+..+..+
T Consensus 175 ~~~~---------~~~~lvEEfI~-G~E~sVe~i~~~g~ 203 (887)
T PRK02186 175 RRAG---------TRAALVQAYVE-GDEYSVETLTVARG 203 (887)
T ss_pred HhcC---------CCcEEEeeccc-CCcEEEEEEEECCc
Confidence 4311 24589999998 68999988877643
No 65
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.64 E-value=0.00043 Score=68.95 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHh--hccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTN--KEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~--aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
..+++|.++ | +|+|++..+++. +++.+ ...+++ +|+|+||..-.+++ ||.+..|.+++.++..+
T Consensus 114 ~~~~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~~~~-~P~viKP~~g~~s~----gv~~v~~~~el~~~~~~ 179 (326)
T PRK12767 114 LTYEFLKEN-----G--IPTPKSYLPESL--EDFKAALAKGELQ-FPLFVKPRDGSASI----GVFKVNDKEELEFLLEY 179 (326)
T ss_pred HHHHHHHHc-----C--CCCCCEEcccCH--HHHHhhhhcccCC-CCEEEEeCCCCCcc----CeEEeCCHHHHHHHHHh
Confidence 456667777 8 566688777665 66665 446675 89999997654444 78888999988877543
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCce
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT 129 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~ 129 (423)
. ..++||++++ +.|+.+.+..|..|-+
T Consensus 180 ~--------------~~~lvqeyi~-G~e~~v~~~~~~~G~~ 206 (326)
T PRK12767 180 V--------------PNLIIQEFIE-GQEYTVDVLCDLNGEV 206 (326)
T ss_pred C--------------CCeEEEeccC-CceEEEEEEEcCCCCE
Confidence 2 2589999995 7899999999865544
No 66
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00036 Score=71.12 Aligned_cols=107 Identities=19% Similarity=0.344 Sum_probs=77.7
Q ss_pred HHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhcc
Q 014514 12 KRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGT 91 (423)
Q Consensus 12 k~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~ 91 (423)
|++++++ .++-|+++| +.++++. +++.+.+..+| +||++||-.-.||. |+.+..|.+|..+.+...+..
T Consensus 117 r~~fke~-m~eigi~~P---~~~~~~~--~e~~~~~~~ig-~PvIVrP~~~lGG~----G~~i~~n~eel~~~~~~~l~~ 185 (400)
T COG0458 117 KKLFKEA-MREIGIPVP---SRIAHSV--EEADEIADEIG-YPVIVKPSFGLGGS----GGGIAYNEEELEEIIEEGLRA 185 (400)
T ss_pred HHHHHHH-HHHcCCCCC---ccccccH--HHHhhhHhhcC-CCEEEecCcCCCCC----ceeEEeCHHHHHHHHHhcccc
Confidence 4444442 333486555 5566666 88888999997 99999988755444 666778999988877766542
Q ss_pred chhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-CceEEeccCCcc
Q 014514 92 EVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFSECGGI 138 (423)
Q Consensus 92 ~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~~~~GGv 138 (423)
..++.+|+|+.+....|+..-+.+|.. .+++.+. .+-.
T Consensus 186 --------s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~-men~ 224 (400)
T COG0458 186 --------SPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCN-MENL 224 (400)
T ss_pred --------CccccceeeeeecCceEEEEEEEEeCCCCEEEEEe-CCcc
Confidence 356789999999999999999999998 4555554 4444
No 67
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.62 E-value=0.00024 Score=78.28 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeC---CHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNL---DLAQVAEFV 85 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~---~~ee~~~a~ 85 (423)
.-+|++|++. | ||+|++..+++. +++.++...++++||||||.....|+ ||.+.. +.+++.++.
T Consensus 477 ~~TK~iL~~a-----G--IPVP~g~~~~~~--~~a~~~~~~~~g~PVVVKP~~g~~G~----GVsi~~~~~~~eel~~Al 543 (737)
T TIGR01435 477 VVTKKVLAEA-----G--FRVPFGDEFSSQ--ALALEAFSLFENKAIVVKPKSTNYGL----GITIFKNGFTLEDFQEAL 543 (737)
T ss_pred HHHHHHHHHc-----C--cCCCCEEEECCH--HHHHHHHHHhcCCCEEEeeCCCCCcC----CeEEecCcCCHHHHHHHH
Confidence 4578999998 8 566688888765 56666666664589999998764455 888754 467777776
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEc
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D 124 (423)
..... . -..+|||++++ |.|+.+.+.-+
T Consensus 544 ~~A~~-----~-----~~~VLVEefI~-G~EyRv~VIg~ 571 (737)
T TIGR01435 544 NIAFS-----E-----DSSVIIEEFLP-GTEYRFFVLND 571 (737)
T ss_pred HHHHh-----c-----CCeEEEEeccc-CCEEEEEEECC
Confidence 54321 1 13599999998 88999977654
No 68
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.57 E-value=0.0005 Score=68.15 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+=...+++|++. | +|+|++.++.+. +++.+....++++|+|+||-.-.+++ ||.+..+.+++....+
T Consensus 99 dK~~~~~~l~~~-----g--ip~P~t~~~~~~--~~~~~~~~~~~~~P~VvKP~~g~~g~----GV~~v~~~~~~~~~~~ 165 (300)
T PRK10446 99 DKLRSMQLLARQ-----G--IDLPVTGIAHSP--DDTSDLIDMVGGAPLVVKLVEGTQGI----GVVLAETRQAAESVID 165 (300)
T ss_pred cHHHHHHHHHHc-----C--CCCCCEEEeCCH--HHHHHHHHHhCCCCEEEEECCCCCcc----cEEEEcCHHHHHHHHH
Confidence 334567888888 8 566688777655 66666666664589999998755455 8888888887766655
Q ss_pred HHhccchhccCCCCCceeeEEeeecC--CCceEEEEEEEc
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVP--HNQEYYLSIVSD 124 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~--~~~Elylgi~~D 124 (423)
.+.. .. ..++|||+++ .+.|+.+.+.-+
T Consensus 166 ~~~~-----~~-----~~~lvQe~I~~~~g~d~rv~vig~ 195 (300)
T PRK10446 166 AFRG-----LN-----AHILVQEYIKEAQGCDIRCLVVGD 195 (300)
T ss_pred HHHh-----cC-----CCEEEEeeeccCCCceEEEEEECC
Confidence 4321 01 2489999996 478999987643
No 69
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.57 E-value=0.00049 Score=69.77 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCC----HHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTD----FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQV 81 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~----~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~ 81 (423)
.+=+..|++|+++ | ||++++....+.+ .+++.+....++ +|+||||... +-+. ||.+..+.+|+
T Consensus 129 ~DK~~~k~~l~~~-----G--I~~p~~~~~~~~~~~~~~~~~~~~~~~l~-~PvvVKP~~g--gsS~--GV~~v~~~~el 196 (347)
T PRK14572 129 MDKTRANQIFLQS-----G--QKVAPFFELEKLKYLNSPRKTLLKLESLG-FPQFLKPVEG--GSSV--STYKITNAEQL 196 (347)
T ss_pred hCHHHHHHHHHHc-----C--CCCCCEEEEEccccccChHHHHHHHHhcC-CCEEEecCCC--CCCC--CEEEECCHHHH
Confidence 3446789999999 8 5666777764321 123333345675 9999999664 2322 78889999999
Q ss_pred HHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEc
Q 014514 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (423)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D 124 (423)
..+.+..... . ..+|||++++ ++|+.+++..+
T Consensus 197 ~~a~~~~~~~-----~-----~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 197 MTLLALIFES-----D-----SKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred HHHHHHHHhc-----C-----CCEEEEcCcc-cEEEEEEEEeC
Confidence 9888876421 1 2489999998 79999998865
No 70
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.54 E-value=0.00036 Score=77.62 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe---CCHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN---LDLAQVAEF 84 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~---~~~ee~~~a 84 (423)
=+.+|++|+++ | ||+|++.++.+. +++.++...+.++|+||||....+++ ||.+. .+.+++.++
T Consensus 489 K~~tk~lL~~~-----G--IpvP~~~~~~~~--e~a~~~~~~~~g~PvVVKP~~g~~G~----GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 489 KVVTKKILAEA-----G--FPVPAGDEFTSL--EEALADYSLFADKAIVVKPKSTNFGL----GISIFKEPASLEDYEKA 555 (752)
T ss_pred HHHHHHHHHHC-----C--cCCCCEEEEcCH--HHHHHHHHHhcCCCEEEEECCCCCcC----CeEEecCcCCHHHHHHH
Confidence 35678899998 8 566688888765 67766666643589999999875556 88774 467888877
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEE
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~ 122 (423)
+..... .. ..++||++++ |.|+.+.+.
T Consensus 556 ~~~a~~-----~~-----~~vlVEEfI~-G~E~Rv~Vi 582 (752)
T PRK02471 556 LEIAFR-----ED-----SSVLVEEFIV-GTEYRFFVL 582 (752)
T ss_pred HHHHHh-----cC-----CcEEEEeccc-CCEEEEEEE
Confidence 766531 11 3589999997 889988665
No 71
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.51 E-value=0.00055 Score=79.20 Aligned_cols=95 Identities=15% Similarity=0.280 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
.-+++|++. | ||+|++..+++. +|+.+.+..++ ||||+||....|++ ||.+..|.+|+..++.+..
T Consensus 672 ~~~~~L~~~-----G--Ip~P~~~~~~s~--ee~~~~~~~ig-yPvvVKP~~~~Gg~----Gv~iv~~~eeL~~~~~~a~ 737 (1066)
T PRK05294 672 RFSKLLEKL-----G--IPQPPNGTATSV--EEALEVAEEIG-YPVLVRPSYVLGGR----AMEIVYDEEELERYMREAV 737 (1066)
T ss_pred HHHHHHHHc-----C--cCCCCeEEECCH--HHHHHHHHhcC-CCeEEEeCCCCCCC----cEEEECCHHHHHHHHHHHH
Confidence 346677777 8 566688888776 78888888886 99999997766666 8899999999998887765
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
... .-..++||++++...|+-+.+..|..
T Consensus 738 ~~s--------~~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 738 KVS--------PDHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred hhC--------CCCcEEEEecCCCCEEEEEEEEecCC
Confidence 321 11358999999866699999988764
No 72
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.45 E-value=0.001 Score=67.42 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+=...|++|+++ | ||++++..+++. ++.. ...++ +|++|||-...+.+ ||....+.+|+.++.+
T Consensus 132 DK~~~k~~l~~~-----G--Ip~p~~~~~~~~--~~~~--~~~l~-~P~iVKP~~~gsS~----Gv~~v~~~~eL~~a~~ 195 (343)
T PRK14568 132 DKSLAYIVAKNA-----G--IATPAFWTVTAD--ERPD--AATLT-YPVFVKPARSGSSF----GVSKVNSADELDYAIE 195 (343)
T ss_pred CHHHHHHHHHHc-----C--cCcCCEEEEECC--chhh--hhhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 345678888888 8 566688887765 2221 24565 89999997653333 8889999999988877
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
.... .. ..+|||++++ ++|+-+++..+..
T Consensus 196 ~a~~-----~~-----~~vlVEe~I~-G~E~sv~vl~~~~ 224 (343)
T PRK14568 196 SARQ-----YD-----SKVLIEEAVV-GSEVGCAVLGNGA 224 (343)
T ss_pred HHHh-----cC-----CcEEEECCcC-CEEEEEEEEcCCC
Confidence 6531 11 3589999998 7899999887643
No 73
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.43 E-value=0.0011 Score=67.65 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
.-|++|+++ ||++ |+. +.++ ++ ++ +||||||....|+| ||.++.|.+|+.+++++++
T Consensus 126 ~~k~~L~~a-----GIp~--p~~--~~~~--~~-------i~-~PvIVKp~~g~ggk----Gv~i~~s~~El~~~~~~l~ 182 (358)
T PRK13278 126 KERKLLEEA-----GIRI--PRK--YESP--ED-------ID-RPVIVKLPGAKGGR----GYFIAKSPEEFKEKIDKLI 182 (358)
T ss_pred HHHHHHHHc-----CCCC--CCE--eCCH--HH-------cC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHHHHHHH
Confidence 345667776 9554 453 3333 32 33 89999996655555 9999999999999999886
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-CceEEec
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFS 133 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~~ 133 (423)
.+... .....++|||++. |.|+++-+...+. +.+-++|
T Consensus 183 ~~~~~-----~~~~~~iIEEfI~-G~e~sv~~f~s~~~~~~e~l~ 221 (358)
T PRK13278 183 ERGLI-----TEVEEAIIQEYVV-GVPYYFHYFYSPIKNRLELLG 221 (358)
T ss_pred hcccc-----CCCCeEEEEecCC-CcEEEEEEEEeccCCeEEEEe
Confidence 54321 1246799999998 7899999998774 6665554
No 74
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00044 Score=68.11 Aligned_cols=84 Identities=23% Similarity=0.139 Sum_probs=64.4
Q ss_pred CcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeE
Q 014514 27 LQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFI 106 (423)
Q Consensus 27 ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vL 106 (423)
+|+.+...+.+. +|..+++..+| ||+|+||..-..|| |=-+..+++++..+++.-... ..+.-..|+
T Consensus 127 lpTs~Y~fa~s~--~e~~~a~~~iG-fPcvvKPvMSSSGk----Gqsvv~~~e~ve~AW~~A~~g------~R~~~~RVI 193 (394)
T COG0027 127 LPTSKYRFADSL--EELRAAVEKIG-FPCVVKPVMSSSGK----GQSVVRSPEDVEKAWEYAQQG------GRGGSGRVI 193 (394)
T ss_pred CCCccccccccH--HHHHHHHHHcC-CCeecccccccCCC----CceeecCHHHHHHHHHHHHhc------CCCCCCcEE
Confidence 898899998876 99999999997 99999998865555 445678899988887765432 223446799
Q ss_pred EeeecCCCceEEEEEEE
Q 014514 107 VEPFVPHNQEYYLSIVS 123 (423)
Q Consensus 107 Ve~~v~~~~Elylgi~~ 123 (423)
||++++...|+-+=..+
T Consensus 194 VE~fv~fd~EiTlLtvr 210 (394)
T COG0027 194 VEEFVKFDFEITLLTVR 210 (394)
T ss_pred EEEEecceEEEEEEEEE
Confidence 99999988887654443
No 75
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.39 E-value=0.001 Score=68.05 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCC----CHHhHHhh-ccccCCCcEEEeeccccCccCCcCeeEEeCCHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTEST----DFSELTNK-EPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~----~~~ea~~a-a~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee 80 (423)
.+=+.+|++|+++ | ||++++...+.. +.+++.+. ...++ +|++|||... |.|. ||.+..+.+|
T Consensus 128 ~DK~~tK~~l~~~-----G--Ipt~p~~~~~~~~~~~~~~~~~~~~~~~lg-~PviVKP~~~--GsS~--Gv~~v~~~~e 195 (364)
T PRK14570 128 INKYFCKLLLKSF-----N--IPLVPFIGFRKYDYFLDKEGIKKDIKEVLG-YPVIVKPAVL--GSSI--GINVAYNENQ 195 (364)
T ss_pred HCHHHHHHHHHHc-----C--CCCCCEEEEeccccccchHHHHHHHHHhcC-CCEEEEeCCC--CCCC--cEEEeCCHHH
Confidence 3456789999999 8 566576555321 12344333 35575 9999999764 2232 7888899999
Q ss_pred HHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 81 VAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
+..+.++.... . ..+|||+++. ++|+-+++.-|.
T Consensus 196 l~~al~~a~~~-----~-----~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 196 IEKCIEEAFKY-----D-----LTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred HHHHHHHHHhC-----C-----CCEEEECCcC-CEEEEEEEECCC
Confidence 99888876521 1 3489999998 899999988654
No 76
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=97.33 E-value=0.00056 Score=63.33 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
-..++|+++ || |+|++.++.+. +++.+..+.++++|+|+||..-..|+ ||.+..+.+++....+...
T Consensus 6 ~~~~~l~~~-----gi--pvP~t~~~~~~--~~~~~~~~~~~~~p~ViKp~~g~~G~----gV~~i~~~~~~~~~l~~~~ 72 (190)
T PF08443_consen 6 LTLQLLAKA-----GI--PVPETRVTNSP--EEAKEFIEELGGFPVVIKPLRGSSGR----GVFLINSPDELESLLDAFK 72 (190)
T ss_dssp HHHHHHHHT-----T-------EEEESSH--HHHHHHHHHH--SSEEEE-SB-----------EEEESHCHHHHHHH---
T ss_pred HHHHHHHHC-----Cc--CCCCEEEECCH--HHHHHHHHHhcCCCEEEeeCCCCCCC----EEEEecCHHHHHHHHHHHH
Confidence 356788888 85 55689898876 88888888883489999996643333 8888889888876655432
Q ss_pred ccchhccCCCCCceeeEEeeecCCC--ceEEEEEE
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHN--QEYYLSIV 122 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~--~Elylgi~ 122 (423)
.. -..+++|++++.. +++.+-+.
T Consensus 73 ~~----------~~~~~~Q~fI~~~~g~d~Rv~Vi 97 (190)
T PF08443_consen 73 RL----------ENPILVQEFIPKDGGRDLRVYVI 97 (190)
T ss_dssp ------------TTT-EEEE----SS---EEEEEE
T ss_pred hc----------cCcceEeccccCCCCcEEEEEEE
Confidence 11 0235999999864 36665433
No 77
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.31 E-value=0.0016 Score=63.36 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
..+++|+++ | ||+|++..+.+. +++.+....++ +|+|+||..-.+++ ||.+..+.+++.++.+...
T Consensus 90 ~~~~~l~~~-----g--ip~P~t~~~~~~--~~~~~~~~~~~-~P~vvKP~~g~~g~----gv~~v~~~~~l~~~~~~~~ 155 (280)
T TIGR02144 90 FTYLKLAKA-----G--VPTPRTYLAFDR--EAALKLAEALG-YPVVLKPVIGSWGR----LVALIRDKDELESLLEHKE 155 (280)
T ss_pred HHHHHHHHC-----C--cCCCCeEeeCCH--HHHHHHHHHcC-CCEEEEECcCCCcC----CEEEECCHHHHHHHHHHHH
Confidence 466777887 8 555688777655 67766666775 89999997755444 6888888888776553321
Q ss_pred ccchhccCCCCCceeeEEeeecCC-CceEEEEEE
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPH-NQEYYLSIV 122 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~-~~Elylgi~ 122 (423)
. .. . ..-..++||++++. +.|+.+.+.
T Consensus 156 ~--~~--~--~~~~~~ivQefI~~~~~d~~v~vi 183 (280)
T TIGR02144 156 V--LG--G--SQHKLFYIQEYINKPGRDIRVFVI 183 (280)
T ss_pred h--hc--C--CcCCeEEEEcccCCCCCceEEEEE
Confidence 0 00 0 01235899999984 567666553
No 78
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.28 E-value=0.0018 Score=64.03 Aligned_cols=90 Identities=21% Similarity=0.166 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+-.|++|+ . | ||+|++..+.+. .. ...++ +|+|+||..-.+++ ||.+..|.+++.++.++.
T Consensus 97 ~~~k~~l~-~-----~--ip~p~~~~~~~~--~~----~~~l~-~P~vvKP~~g~~s~----Gv~~v~~~~el~~~~~~~ 157 (299)
T PRK14571 97 LLTYRFLK-G-----T--VEIPDFVEIKEF--MK----TSPLG-YPCVVKPRREGSSI----GVFICESDEEFQHALKED 157 (299)
T ss_pred HHHHHHHh-c-----C--CCCCCEEEEech--hh----hhhcC-CCEEEecCCCCCcC----CEEEECCHHHHHHHHHHH
Confidence 44566665 3 6 566677776532 21 24565 99999998754444 888899999998887765
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCc
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGC 128 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp 128 (423)
+.. -..+||||+++ ++|+.+++..+..++
T Consensus 158 ~~~----------~~~vlVEeyI~-G~E~sv~vl~~~~~~ 186 (299)
T PRK14571 158 LPR----------YGSVIVQEYIP-GREMTVSILETEKGF 186 (299)
T ss_pred Hhh----------CCcEEEEcccc-ceEEEEEEEcCCCCe
Confidence 421 13589999998 789999999876443
No 79
>PLN02522 ATP citrate (pro-S)-lyase
Probab=97.28 E-value=0.0033 Score=67.95 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=90.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~-~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
.|+||+|+-.|+++...+|.+...|. -..-++-+||++. .-.+.+.++.+.+ ||++++|++.. .|+- +-
T Consensus 167 pG~VgiVSqSGtL~~ei~~~~~~~Gl--G~S~~VsiGnd~~~g~~~~D~L~~~~~----Dp~Tk~IvlygEiGg~-~e-- 237 (608)
T PLN02522 167 PGSVGFVSKSGGMSNEMYNVIARVTD--GIYEGIAIGGDVFPGSTLSDHVLRFNN----IPQIKMIVVLGELGGR-DE-- 237 (608)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCC--CeEEEEEeCCCCCCCCCHHHHHHHHhc----CCCCCEEEEEEecCch-hH--
Confidence 79999999999999999999998744 3677788999986 3557788888777 99999888877 4553 32
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH-----------------------HHHHHHHhhccccCCceeecC
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ-----------------------TGLAKMRALGEELGIPLEVYG 403 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~-----------------------~a~~~l~~~~~~~gip~~~~~ 403 (423)
+.+++++++.. .+|||++...|.++. .=...|++ +|+..-
T Consensus 238 -----~~f~ea~~~a~-----~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~----aGv~vv--- 300 (608)
T PLN02522 238 -----YSLVEALKQGK-----VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKD----AGAIVP--- 300 (608)
T ss_pred -----HHHHHHHHHhc-----CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHH----CCCeEe---
Confidence 44555666643 379999998887661 11334454 999875
Q ss_pred CCCCHHHHHHHHHHH
Q 014514 404 PEATMTGICKQAIDC 418 (423)
Q Consensus 404 ~~~~~~~av~~~~~~ 418 (423)
++++|....+.+.
T Consensus 301 --~s~~El~~~~~~~ 313 (608)
T PLN02522 301 --TSFEALEAAIKET 313 (608)
T ss_pred --CCHHHHHHHHHHH
Confidence 7888877666553
No 80
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.14 E-value=0.0035 Score=60.58 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+..+++|+++ | +|+|++..+.+. +++.+....++ +|+|+||..-.+++ ||.+..+.+++......+
T Consensus 90 ~~~~~~l~~~-----g--i~~P~t~~~~~~--~~~~~~~~~~~-~p~vvKP~~g~~g~----gv~~i~~~~~l~~~~~~~ 155 (277)
T TIGR00768 90 FLTSQLLAKA-----G--LPQPRTGLAGSP--EEALKLIEEIG-FPVVLKPVFGSWGR----LVSLARDKQAAETLLEHF 155 (277)
T ss_pred HHHHHHHHHC-----C--CCCCCEEEeCCH--HHHHHHHHhcC-CCEEEEECcCCCCC----ceEEEcCHHHHHHHHHHH
Confidence 4456777777 8 466688887765 77777777786 89999998765544 788888888887665543
Q ss_pred hccchhccCCCCCceeeEEeeecCCC
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHN 114 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~ 114 (423)
... + ..-..++||++++..
T Consensus 156 ~~~-----~--~~~~~~lvQe~I~~~ 174 (277)
T TIGR00768 156 EQL-----N--GPQNLFYVQEYIKKP 174 (277)
T ss_pred HHh-----c--ccCCcEEEEeeecCC
Confidence 211 1 011468999999853
No 81
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=97.04 E-value=0.0078 Score=53.18 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=69.5
Q ss_pred CcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhh
Q 014514 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAT 349 (423)
Q Consensus 270 g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~ 349 (423)
|+|++++..|+++...++.+...| .-..-++-+|..++- .+.+.++.+.+ ||++++|++-+ -++-+.
T Consensus 2 G~valisQSG~~~~~~~~~~~~~g--~g~s~~vs~Gn~~dv-~~~d~l~~~~~----D~~t~~I~ly~-E~~~d~----- 68 (138)
T PF13607_consen 2 GGVALISQSGALGTAILDWAQDRG--IGFSYVVSVGNEADV-DFADLLEYLAE----DPDTRVIVLYL-EGIGDG----- 68 (138)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHTT---EESEEEE-TT-SSS--HHHHHHHHCT-----SS--EEEEEE-S--S-H-----
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC--CCeeEEEEeCccccC-CHHHHHHHHhc----CCCCCEEEEEc-cCCCCH-----
Confidence 789999999999999999999864 345666777776655 47777777777 99999776655 334443
Q ss_pred hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH-------------HHHHHHhhccccCCceeecCCCCCHHHHHHH
Q 014514 350 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQT-------------GLAKMRALGEELGIPLEVYGPEATMTGICKQ 414 (423)
Q Consensus 350 ~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~-------------a~~~l~~~~~~~gip~~~~~~~~~~~~av~~ 414 (423)
+.++++.++.. .+|||++...|.+..- ..+.+..+..++|+-.. ++++|.+..
T Consensus 69 --~~f~~~~~~a~-----~~KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v-----~~~~el~~~ 134 (138)
T PF13607_consen 69 --RRFLEAARRAA-----RRKPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRV-----DDLDELLDA 134 (138)
T ss_dssp --HHHHHHHHHHC-----CCS-EEEEE---------------------HHHHHHHHHHCTEEEE-----SSHHHHHHH
T ss_pred --HHHHHHHHHHh-----cCCCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEE-----CCHHHHHHH
Confidence 56667777765 3599999877752221 11333333444887544 677776554
No 82
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=97.00 E-value=0.027 Score=59.63 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
-.+|.+..+. | +|+.+++.=...+.+++...+.++| |||.+|+----||| |.++..+++|+.+++..-
T Consensus 117 ~~AK~l~~~A-----g--Vp~VPG~~g~~qd~~~~~~~A~eiG-yPVlIKAsaGGGGK----GMRvv~~~~e~~e~l~sa 184 (645)
T COG4770 117 IAAKKLAAEA-----G--VPTVPGYHGPIQDAAELVAIAEEIG-YPVLIKASAGGGGK----GMRVVETPEEFAEALESA 184 (645)
T ss_pred HHHHHHHHHc-----C--CCccCCCCCcccCHHHHHHHHHhcC-CcEEEEeccCCCCC----ceEeecCHHHHHHHHHHH
Confidence 4689999998 8 7777775533335689999999997 99999987655666 899999998877765544
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
..-....-| -..++||+++...+=+=+-+.-|..|-++.++
T Consensus 185 rrEA~asFG----ddrv~iEkyl~~PRHIEiQV~aD~HGNvv~Lg 225 (645)
T COG4770 185 RREAKASFG----DDRVFIEKYLDKPRHIEIQVFADQHGNVVHLG 225 (645)
T ss_pred HHHHHhhcC----CceEehhhhcCCCceEEEEEEecCCCCEEEee
Confidence 321111012 24689999998766555777889888777665
No 83
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=97.00 E-value=0.013 Score=58.80 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=89.6
Q ss_pred CCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchh
Q 014514 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 345 (423)
Q Consensus 268 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a-~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~ 345 (423)
..|+|++++-.|+++...++.+...|. -..-++-+||++ ..-.+.+.++.+.+ ||++++|++.. .+|... .
T Consensus 168 ~~G~VgiVSqSGtl~~ei~~~~~~~Gl--G~S~~VsiGnd~~~g~~~~D~L~~~~~----Dp~T~~Ivl~~E~gG~~e-~ 240 (317)
T PTZ00187 168 KKGKIGIVSRSGTLTYEAVAQTTAVGL--GQSTCVGIGGDPFNGTNFIDCLKLFLN----DPETEGIILIGEIGGTAE-E 240 (317)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCC--CEEEEEEeCCCCCCCCCHHHHHHHHhh----CCCccEEEEEEecCCchh-H
Confidence 379999999999999999999999744 467889999997 33458888888888 99999988888 555431 2
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH----------------HHHhhccccCCceeecCCCCCHH
Q 014514 346 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA----------------KMRALGEELGIPLEVYGPEATMT 409 (423)
Q Consensus 346 ~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~----------------~l~~~~~~~gip~~~~~~~~~~~ 409 (423)
+ + ..++++ .. .+|||++...|.++..+++ ...++.+++|+..- ++++
T Consensus 241 ~-a---a~fi~~---~~-----~~KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~-----~~~~ 303 (317)
T PTZ00187 241 E-A---AEWIKN---NP-----IKKPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVV-----KSPA 303 (317)
T ss_pred H-H---HHHHHh---hc-----CCCcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEe-----CCHH
Confidence 2 2 233332 21 3799999988876522221 11222334899876 7888
Q ss_pred HHHHHHHHHh
Q 014514 410 GICKQAIDCI 419 (423)
Q Consensus 410 ~av~~~~~~~ 419 (423)
|......+..
T Consensus 304 el~~~~~~~~ 313 (317)
T PTZ00187 304 QLGKTMLEVM 313 (317)
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 84
>PRK06091 membrane protein FdrA; Validated
Probab=96.96 E-value=0.0073 Score=64.39 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=89.1
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCC-----CCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCC
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA-----PNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIA 342 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~-----a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~ 342 (423)
.|+|++++-.|+++...++.+...| .-...++-+||. +..-.+.++++.+.+ ||+++.|++.. |.
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~~~G--iG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~----DP~TkvIvly~kpp--- 263 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIALAG--EGITHAIGLGGRDLSAEVGGISALTALEMLSA----DEKSEVIAFVSKPP--- 263 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcC--CCeEEEEECCCCccccccCCCCHHHHHHHHhh----CCCCcEEEEEEecC---
Confidence 8999999999999999999999874 446777888877 322347788888887 99999888877 62
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 343 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 343 ~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+.+. +.++++++.. +|||++...|.+...+ ++ .|+=. .+|.+|+++.++-++.
T Consensus 264 -aE~v~---~~fl~aar~~-------~KPVVvlk~Grs~~g~----~q----~GVi~-----a~tleEl~~~A~~la~ 317 (555)
T PRK06091 264 -AEAVR---LKIINAMKAT-------GKPVVALFLGYTPAVA----RD----ENVWF-----ASTLDEAARLACLLSR 317 (555)
T ss_pred -chHHH---HHHHHHHhhC-------CCCEEEEEecCCchhh----hc----CCeEE-----eCCHHHHHHHHHHHhc
Confidence 36666 6777776653 6999999666554333 44 78732 3799999999887764
No 85
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0047 Score=62.50 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=70.2
Q ss_pred HHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 11 SKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 11 ak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
=|++|++. | +|+++++++.+. +|+..++..+| +|.|+|.--. .-|| |..+..+.++....+....
T Consensus 103 eK~~l~~~-----G--i~va~~~~v~~~--~el~~~~~~~g-~p~VlKtr~gGYDGk----GQ~~i~~~~~~~~~~~~~~ 168 (375)
T COG0026 103 EKQFLDKA-----G--LPVAPFQVVDSA--EELDAAAADLG-FPAVLKTRRGGYDGK----GQWRIRSDADLELRAAGLA 168 (375)
T ss_pred HHHHHHHc-----C--CCCCCeEEeCCH--HHHHHHHHHcC-CceEEEeccccccCC----CeEEeeCcccchhhHhhhh
Confidence 47777777 8 677799999887 88988999997 9999996653 3334 6666666666555433321
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
. + . ..++|+|++..+|+.+=+.++++|-+..+
T Consensus 169 ~------~--~---~~vlE~fV~F~~EiSvi~aR~~~G~~~~y 200 (375)
T COG0026 169 E------G--G---VPVLEEFVPFEREISVIVARSNDGEVAFY 200 (375)
T ss_pred c------c--C---ceeEEeecccceEEEEEEEEcCCCCEEEe
Confidence 1 1 1 12899999999999998888888766555
No 86
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=96.86 E-value=0.0051 Score=66.30 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEE-eCCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVAL-NLDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l-~~~~ee~~~a~~ 86 (423)
=..+|++|++. | ||+|++..+.+. +++.+.++.+| |+|+||..-.+|+ ||.+ ..+.+++.+++.
T Consensus 298 K~~tk~lL~~a-----G--IpVP~~~~~~~~--~~~~~~~~~~G--~vVVKP~~G~~G~----Gv~v~v~~~~eL~~a~~ 362 (547)
T TIGR03103 298 KRLTRRLVSEA-----G--LQVPEQQLAGNG--EAVEAFLAEHG--AVVVKPVRGEQGK----GISVDVRTPDDLEAAIA 362 (547)
T ss_pred HHHHHHHHHHc-----C--cCCCCEEEECCH--HHHHHHHHHhC--CEEEEECCCCCCc----CeEEecCCHHHHHHHHH
Confidence 35678899998 8 566688888765 77777777885 6999997654444 8887 478888887776
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEE
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVS 123 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~ 123 (423)
..... . ..++||++++ +.|+.+.+.-
T Consensus 363 ~a~~~-----~-----~~vlvEe~i~-G~d~Rv~Vig 388 (547)
T TIGR03103 363 KARQF-----C-----DRVLLERYVP-GEDLRLVVID 388 (547)
T ss_pred HHHhc-----C-----CcEEEEEecc-CCeEEEEEEC
Confidence 65321 1 3589999997 7788775443
No 87
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=96.67 E-value=0.17 Score=54.68 Aligned_cols=258 Identities=19% Similarity=0.185 Sum_probs=141.7
Q ss_pred HHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEE
Q 014514 40 FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYL 119 (423)
Q Consensus 40 ~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elyl 119 (423)
.+||.+.+++.| +||++|+-.--||| |.++..+.|++++++++-.......-|. -.+.||++++..+-+-+
T Consensus 173 ~~EA~eF~k~yG-~PvI~KAAyGGGGR----GmRvVr~~e~vee~f~Ra~SEA~aaFGn----G~~FvEkF~ekPrHIEv 243 (1176)
T KOG0369|consen 173 VEEALEFVKEYG-LPVIIKAAYGGGGR----GMRVVRSGEDVEEAFQRAYSEALAAFGN----GTLFVEKFLEKPRHIEV 243 (1176)
T ss_pred HHHHHHHHHhcC-CcEEEeecccCCCc----ceEEeechhhHHHHHHHHHHHHHHhcCC----ceeeHHhhhcCcceeEE
Confidence 489999999986 99999998877777 8899988888888777665433322232 24678999987666667
Q ss_pred EEEEcCCCceEEeccCCccccccccCcEEEEecCcccCCCHHHHHHHHhCCChhHHHHHHHHHHHHHHHhh---------
Q 014514 120 SIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQ--------- 190 (423)
Q Consensus 120 gi~~D~~gp~il~~~~GGv~vE~~~d~~~~~pi~~~~~l~~~~~~~ll~g~~~~~~~~l~~~l~~L~~l~~--------- 190 (423)
-+.-|..|-++-+- +-.--|.-...++.. |.|. ..++..-++++.+-..+|.+-.-
T Consensus 244 QllgD~~GNvvHLy-ERDCSvQRRHQKVVE--iAPA------------~~Lp~~vR~~~~~davklAk~vgY~NAGTvEF 308 (1176)
T KOG0369|consen 244 QLLGDKHGNVVHLY-ERDCSVQRRHQKVVE--IAPA------------KTLPPEVRDAILTDAVKLAKHVGYENAGTVEF 308 (1176)
T ss_pred EEecccCCCEEEEe-ecccchhhhhcceeE--eccc------------ccCCHHHHHHHHHHHHHHHHHhCcccCCceEE
Confidence 77778777665332 111112222233333 3332 13444445566666666665432
Q ss_pred --cc--Ccceeeeeeeee-c---CCCeEEEe---eEEEeCCC-----ccccCccccccccCCCCC---CCCCCchhhccc
Q 014514 191 --DL--DFSFIEMNPFTL-V---NGEPYPLD---MRGELDDT-----AAFKNFKKWANIEFPLPF---GRVLSSTESFIH 251 (423)
Q Consensus 191 --~~--d~~~lEINPL~v-~---~g~~valD---aki~ldd~-----a~~r~~~~~~~~~~~~~~---~~~~~~~e~~~~ 251 (423)
|. .-..+||||=+. + ..++.-+| |-|.+... -.++|.+|-- . -| -|-.++ +
T Consensus 309 LvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~t----r-G~aIQCRvTTE-D---- 378 (1176)
T KOG0369|consen 309 LVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITT----R-GFAIQCRVTTE-D---- 378 (1176)
T ss_pred EEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCCcccccccccceee----c-ceEEEEEEecc-C----
Confidence 21 236899999654 2 12344444 33333321 1223332200 0 00 000000 0
Q ss_pred ccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCC
Q 014514 252 SLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 331 (423)
Q Consensus 252 ~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~ 331 (423)
-+. + |-.-.|||-+.-.|+|.|+ -+|-.+. |..+ ++ .|+-+
T Consensus 379 -----Pa~--~--FqPdtGriEVfRSgeGmGi-RLD~asa---------------------faGa---vI-----sPhYD 419 (1176)
T KOG0369|consen 379 -----PAK--G--FQPDTGRIEVFRSGEGMGI-RLDGASA---------------------FAGA---VI-----SPHYD 419 (1176)
T ss_pred -----ccc--c--CCCCCceEEEEEeCCCceE-eecCccc---------------------cccc---cc-----ccccc
Confidence 011 1 1223588888888888765 1121111 1122 23 58888
Q ss_pred EEEEEe-cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEE
Q 014514 332 KRALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV 374 (423)
Q Consensus 332 ~vlv~~-~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~ 374 (423)
++||-+ +.|- +....+ .-+++++.+.+-.+.+.++|.+.
T Consensus 420 SllVK~i~h~~-~~~~~a---~KMiRaL~eFRiRGVKTNIpFll 459 (1176)
T KOG0369|consen 420 SLLVKVICHGS-TYEIAA---RKMIRALIEFRIRGVKTNIPFLL 459 (1176)
T ss_pred ceEEEEEecCC-ccHHHH---HHHHHHHHHHhhcceecCcHHHH
Confidence 888887 4443 334445 88999999886555556666443
No 88
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=96.64 E-value=0.076 Score=55.66 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
..+|+++++. | +|+.+++--...+.+++.+.+.+|| |||.+|+.---||| |.+++.+++|.++.++.-
T Consensus 113 ~~sk~im~~A-----g--Vp~vpG~~g~~qs~e~~~~~a~eIg-yPvMiKa~~GGGGk----GMria~~~~ef~~~~~~a 180 (670)
T KOG0238|consen 113 STSKQIMKAA-----G--VPLVPGYHGEDQSDEEAKKVAREIG-YPVMIKATAGGGGK----GMRIAWSEEEFEEGLESA 180 (670)
T ss_pred HHHHHHHHhc-----C--CccccCcccccccHHHHHHHHHhcC-CcEEEEeccCCCCc----ceEeecChHHHHHHHHHH
Confidence 5789999998 8 6766663322233489999999997 99999987755556 889999888877654433
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
.....+. --..++|+|+|++..+-+-+-+.-|..|..+-++
T Consensus 181 k~Ea~~s----FGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ 221 (670)
T KOG0238|consen 181 KQEAAKS----FGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLG 221 (670)
T ss_pred HHHHHhh----cCcchhhHHHhccCCceEEEEEEecCCCcEEEec
Confidence 2211110 1246799999998776666777888888777775
No 89
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.63 E-value=0.018 Score=58.54 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=66.7
Q ss_pred HHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccC--ccCCcCeeEEeCCHHHHHHHHHHHhc
Q 014514 13 RLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFG--KRGKSGLVALNLDLAQVAEFVKGRLG 90 (423)
Q Consensus 13 ~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g--~r~k~GGV~l~~~~ee~~~a~~~~~~ 90 (423)
++|.+. ||++| +.+. ++ + .+. +||+|||.-..| +| |+.++.|.+|....+.++..
T Consensus 132 k~L~~a-----GI~~P--k~~~--~p--~-------eId-~PVIVKp~~asG~~sr----G~f~a~s~eEl~~~a~~l~~ 188 (366)
T PRK13277 132 WLLEKA-----GIPYP--KLFK--DP--E-------EID-RPVIVKLPEAKRRLER----GFFTASSYEDFYEKSEELIK 188 (366)
T ss_pred HHHHHc-----CCCCc--eeec--Cc--c-------ccC-ccEEEEECCCCCcccc----CeEeeCCHHHHHHHHHhhhh
Confidence 467777 96554 5433 33 2 343 899999998766 66 88899999999888877754
Q ss_pred cchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-CceEEec
Q 014514 91 TEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFS 133 (423)
Q Consensus 91 ~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~~ 133 (423)
.... ....+...+|||++. |.|+++-+..|+. +.+-++|
T Consensus 189 ~g~I---~~~~~~~~iIQEyI~-G~ey~~d~F~s~l~g~ve~l~ 228 (366)
T PRK13277 189 AGVI---DREDLKNARIEEYVI-GAHFNFNYFYSPIRDRLELLG 228 (366)
T ss_pred cCcc---cccccccceeEeccC-CCEEEEEEEEeccCCcEEEEE
Confidence 2221 012346788999998 8899999999974 6665554
No 90
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.0075 Score=60.62 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=61.9
Q ss_pred HHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHH-HHHHHHHHHh
Q 014514 11 SKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA-QVAEFVKGRL 89 (423)
Q Consensus 11 ak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~e-e~~~a~~~~~ 89 (423)
+-++|.+. | +|+|++.++.++ +++.....+..++|+|+||-.-.+|| ||.+..+.+ ++.+..+.+.
T Consensus 123 ~~~~l~~~-----~--ipvP~T~i~~~~--~~~~~~~~~~~g~pvVlKp~~Gs~G~----gV~~v~~~d~~l~~~~e~~~ 189 (318)
T COG0189 123 TTQLLAKA-----G--IPVPPTLITRDP--DEAAEFVAEHLGFPVVLKPLDGSGGR----GVFLVEDADPELLSLLETLT 189 (318)
T ss_pred HHHHHHhc-----C--CCCCCEEEEcCH--HHHHHHHHHhcCCCEEEeeCCCCCcc----ceEEecCCChhHHHHHHHHh
Confidence 34556665 8 566699888876 45544444433489999988766677 899988877 6666665553
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEc
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD 124 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D 124 (423)
.. .-+.++||++++.....+.++...
T Consensus 190 ~~---------~~~~~ivQeyi~~~~~~~rrivv~ 215 (318)
T COG0189 190 QE---------GRKLIIVQEYIPKAKRDDRRVLVG 215 (318)
T ss_pred cc---------ccceEehhhhcCcccCCcEEEEEe
Confidence 31 123589999999776555555554
No 91
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.51 E-value=0.039 Score=58.06 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=90.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHh
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA 348 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va 348 (423)
.|+|++++-.|+++...+|..... |.-..-++-+|+.++- .+.+.++.+.+ ||++++|++-+= ++.+.
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~--g~g~s~~vs~Gn~~d~-~~~d~l~~l~~----D~~t~~I~ly~E-~~~~~---- 217 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKN--GVGFSYFVSLGNKADI-DESDLLEYLAD----DPDTKVILLYLE-GIKDG---- 217 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhc--CCCcceEEECCchhhC-CHHHHHHHHhh----CCCCCEEEEEec-CCCCH----
Confidence 689999999999999999999886 4457778888888763 56788888887 999997776663 34442
Q ss_pred hhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHH-------------HHHHhhccccCCceeecCCCCCHHHHHHHH
Q 014514 349 TTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL-------------AKMRALGEELGIPLEVYGPEATMTGICKQA 415 (423)
Q Consensus 349 ~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~-------------~~l~~~~~~~gip~~~~~~~~~~~~av~~~ 415 (423)
+.++++.+... .+|||++...|.+..-.+ +.+..+..++|+... ++++|....+
T Consensus 218 ---~~f~~aa~~a~-----~~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-----~~~~el~~~~ 284 (447)
T TIGR02717 218 ---RKFLKTAREIS-----KKKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-----DSIEELFDLA 284 (447)
T ss_pred ---HHHHHHHHHHc-----CCCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-----CCHHHHHHHH
Confidence 45666666653 379999997776643221 233444445899765 7888877765
Q ss_pred HHHh
Q 014514 416 IDCI 419 (423)
Q Consensus 416 ~~~~ 419 (423)
.-++
T Consensus 285 ~~l~ 288 (447)
T TIGR02717 285 RLLS 288 (447)
T ss_pred HHHh
Confidence 5443
No 92
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=96.42 E-value=0.063 Score=52.58 Aligned_cols=128 Identities=14% Similarity=0.208 Sum_probs=90.8
Q ss_pred EEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCEEEEEe-cCcC
Q 014514 264 TVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGI 341 (423)
Q Consensus 264 ~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~-~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi 341 (423)
..+-..|+||+++-.|.+.-=+.-.+...|.| -.--+=+|||+-. ..+.++|+.+.+ ||+.++++++- .||-
T Consensus 140 ~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~G--qS~~IGiGGDpi~Gt~fid~L~~fe~----Dp~T~~ivmiGEiGG~ 213 (293)
T COG0074 140 GNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLG--QSTAIGIGGDPIPGTSFIDALEMFEA----DPETEAIVMIGEIGGP 213 (293)
T ss_pred hhhccCCceEEEecCcchHHHHHHHHHhcCCc--eEEEEEeCCCCcCCccHHHHHHHHhc----CccccEEEEEecCCCc
Confidence 45667999999999999888888888876543 3445778888654 678899999888 99999888777 6774
Q ss_pred CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH--------------------HHHhhccccCCceee
Q 014514 342 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA--------------------KMRALGEELGIPLEV 401 (423)
Q Consensus 342 ~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~--------------------~l~~~~~~~gip~~~ 401 (423)
+ ++.| .+.++++- .+||||+++.|..+.++++ .|++ +|+++-
T Consensus 214 a--Ee~A------A~~i~~~~-----~~KPVVa~iaG~tap~gkrmGhaGaiv~~~~gta~~Ki~al~~----aGv~v~- 275 (293)
T COG0074 214 A--EEEA------AEYIKANA-----TRKPVVAYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEA----AGVKVA- 275 (293)
T ss_pred H--HHHH------HHHHHHhc-----cCCCEEEEEeccCCCccchhhhhhhhhcCCCccHHHHHHHHHH----cCCeec-
Confidence 3 5555 23344421 2599999988866655443 3444 788875
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 014514 402 YGPEATMTGICKQAIDCI 419 (423)
Q Consensus 402 ~~~~~~~~~av~~~~~~~ 419 (423)
++|.+......+..
T Consensus 276 ----etp~~l~~~l~~vl 289 (293)
T COG0074 276 ----ETPAELGELLLEVL 289 (293)
T ss_pred ----CCHHHHHHHHHHHh
Confidence 78887766655543
No 93
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=96.34 E-value=0.068 Score=53.31 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=86.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCC--CCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchh
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 345 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~--a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~ 345 (423)
.|+|++++-.|+++...++.+...|. -..-++-+|+. ++-+ +.+.++.+.+ ||++++|++-+ .+|.. ..
T Consensus 150 ~G~ValiSQSG~l~~~l~~~~~~~gi--G~S~~VS~Gn~~~adv~-~~d~L~yl~~----Dp~T~~I~ly~E~~G~~-~~ 221 (300)
T PLN00125 150 PGRIGIVSRSGTLTYEAVFQTTAVGL--GQSTCVGIGGDPFNGTN-FVDCLEKFVK----DPQTEGIILIGEIGGTA-EE 221 (300)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHcCC--CeEEEEEeCCCCCCCCC-HHHHHHHHhh----CCCCcEEEEEeccCCch-HH
Confidence 79999999999999999999998644 46777888888 6643 6777888877 99999888887 55543 11
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH----------------HHHHHhhccccCCceeecCCCCCHH
Q 014514 346 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG----------------LAKMRALGEELGIPLEVYGPEATMT 409 (423)
Q Consensus 346 ~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a----------------~~~l~~~~~~~gip~~~~~~~~~~~ 409 (423)
+ + +.++++.+ ++|||++.-.|.++..+ -+.+..+..++|+... ++++
T Consensus 222 d-~---~~f~~aa~--------~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v-----~~~~ 284 (300)
T PLN00125 222 D-A---AAFIKESG--------TEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVV-----ESPA 284 (300)
T ss_pred H-H---HHHHHHhc--------CCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEe-----CCHH
Confidence 1 1 44444432 26999999777664100 1223334444898765 7888
Q ss_pred HHHHHHHHH
Q 014514 410 GICKQAIDC 418 (423)
Q Consensus 410 ~av~~~~~~ 418 (423)
|......+.
T Consensus 285 el~~~~~~~ 293 (300)
T PLN00125 285 KIGVAMLEV 293 (300)
T ss_pred HHHHHHHHH
Confidence 877766544
No 94
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.28 E-value=0.064 Score=53.15 Aligned_cols=125 Identities=13% Similarity=0.165 Sum_probs=83.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~-~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...+|.....| .-..-++-+|+.++. -.+.+.++.+.+ ||++++|++-. ..+-.. .+
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~g--iG~S~~Vs~Gn~a~~dv~~~D~l~~l~~----Dp~T~~I~lylE~~~~~~-~~ 215 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAG--FGQSTCVGIGGDPVNGTSFIDVLEAFEK----DPETEAIVMIGEIGGSAE-EE 215 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcC--CCeEEEEEeCCCcCCCCCHHHHHHHHhh----CCCCcEEEEEEecCCchH-HH
Confidence 7999999999999999999999864 446788899988641 346777888887 99999888777 333221 12
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH----------------HHHHHhhccccCCceeecCCCCCHHH
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG----------------LAKMRALGEELGIPLEVYGPEATMTG 410 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a----------------~~~l~~~~~~~gip~~~~~~~~~~~~ 410 (423)
.+ + .++.. ++|||++.-.|.++..+ .+....+..++|+... ++++|
T Consensus 216 ~~---~----~~~~~------~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v-----~~~~e 277 (286)
T TIGR01019 216 AA---D----FIKQN------MSKPVVGFIAGATAPPGKRMGHAGAIISGGKGTAESKIEALEAAGVTVV-----KSPSD 277 (286)
T ss_pred HH---H----HHHhc------CCCCEEEEEecCCCCccccccchhhhhcCCCCCHHHHHHHHHHCCCeEe-----CCHHH
Confidence 22 1 12211 37999998666554101 1223333344898654 78888
Q ss_pred HHHHHHHH
Q 014514 411 ICKQAIDC 418 (423)
Q Consensus 411 av~~~~~~ 418 (423)
......+.
T Consensus 278 l~d~l~~~ 285 (286)
T TIGR01019 278 IGELLAEI 285 (286)
T ss_pred HHHHHHHh
Confidence 77766553
No 95
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.67 E-value=0.14 Score=50.83 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=82.9
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~-~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...+|.....| .-..-++-+|..++. -.+.+.++.+.+ ||++++|++-+ ..+-.+ .+
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~g--iG~s~~Vs~Gn~~~~dv~~~D~l~~l~~----Dp~T~~I~lylE~~~~~~-~~ 217 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLG--FGQSTCVGIGGDPINGTNFIDVLEAFEE----DPETEAIVMIGEIGGSAE-EE 217 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcC--CCeEEEEEeCCCcCCCCCHHHHHHHHhh----CCCCcEEEEEEecCCcHH-HH
Confidence 7999999999999999999999864 446788889988541 246677777777 99999887776 333221 12
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHH----------------HHHHhhccccCCceeecCCCCCHHH
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL----------------AKMRALGEELGIPLEVYGPEATMTG 410 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~----------------~~l~~~~~~~gip~~~~~~~~~~~~ 410 (423)
.+ + .++.. .+|||++.-.|.++..++ ++...+..++|+... ++++|
T Consensus 218 a~---~----~~~~~------~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v-----~~~~e 279 (291)
T PRK05678 218 AA---E----YIKAN------VTKPVVGYIAGVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVA-----RTPSE 279 (291)
T ss_pred HH---H----HHHHc------CCCCEEEEEecCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCCeEC-----CCHHH
Confidence 22 1 11111 269999986665551111 223333444898654 78888
Q ss_pred HHHHHHHHh
Q 014514 411 ICKQAIDCI 419 (423)
Q Consensus 411 av~~~~~~~ 419 (423)
....+..+-
T Consensus 280 l~~~~~~~~ 288 (291)
T PRK05678 280 IGELLKEVL 288 (291)
T ss_pred HHHHHHHHH
Confidence 777766543
No 96
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=95.21 E-value=0.44 Score=52.70 Aligned_cols=140 Identities=20% Similarity=0.180 Sum_probs=86.8
Q ss_pred HHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEE
Q 014514 40 FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYL 119 (423)
Q Consensus 40 ~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elyl 119 (423)
.+|+.+.+++.| |||.+|+-.--||| |-++..+.+++.+++.+-.......-| -..+.||+++...+-+=+
T Consensus 147 ~ee~~~fa~~~g-yPvmiKA~~GGGGR----GMR~vr~~~~l~~~~~~AksEAkaAFG----~~eVyvEk~ve~pkHIEV 217 (1149)
T COG1038 147 IEEALEFAEEYG-YPVMIKAAAGGGGR----GMRVVRSEADLAEAFERAKSEAKAAFG----NDEVYVEKLVENPKHIEV 217 (1149)
T ss_pred HHHHHHHHHhcC-CcEEEEEccCCCcc----ceeeecCHHHHHHHHHHHHHHHHHhcC----CCcEEhhhhhcCcceeEE
Confidence 588999999997 99999988776777 889998988888777665332221112 245789999976665557
Q ss_pred EEEEcCCCceE-EeccCCccccccccCcEEEEecCcccCCCHHHHHHHHhCCChhHHHHHHHHHHHHHHHh---------
Q 014514 120 SIVSDRLGCTI-SFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVF--------- 189 (423)
Q Consensus 120 gi~~D~~gp~i-l~~~~GGv~vE~~~d~~~~~pi~~~~~l~~~~~~~ll~g~~~~~~~~l~~~l~~L~~l~--------- 189 (423)
-+.-|..|-+| +|- =.--|.-...++. -+.|...| ....++++++-..+|.+-.
T Consensus 218 QiLgD~~GnvvHLfE--RDCSvQRRhQKVV--E~APa~~L------------~~~~R~~ic~~Avkla~~~~Y~~AGTvE 281 (1149)
T COG1038 218 QILGDTHGNVVHLFE--RDCSVQRRHQKVV--EVAPAPYL------------SPELRDEICDDAVKLARNIGYINAGTVE 281 (1149)
T ss_pred EEeecCCCCEEEEee--cccchhhccceeE--EecCCCCC------------CHHHHHHHHHHHHHHHHHcCCcccceEE
Confidence 77888887665 441 1111221222333 23343223 3344556666666665532
Q ss_pred --hcc--Ccceeeeeeeee
Q 014514 190 --QDL--DFSFIEMNPFTL 204 (423)
Q Consensus 190 --~~~--d~~~lEINPL~v 204 (423)
.+. ....+|+||=+.
T Consensus 282 FLvd~~~~fyFIEvNPRiQ 300 (1149)
T COG1038 282 FLVDEDGKFYFIEVNPRIQ 300 (1149)
T ss_pred EEEcCCCcEEEEEecCcee
Confidence 122 357899999764
No 97
>PRK06849 hypothetical protein; Provisional
Probab=95.21 E-value=0.12 Score=53.14 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+.-++++++. | +|+|++..+++. +++.+......++|+|+||..-.++ .||.+..+.+.. ..+
T Consensus 118 ~~~~~~~~~~-----G--ipvP~t~~v~~~--~~l~~~~~~~~~~P~vlKP~~~~~~----~~v~~~~~~~~l----~~~ 180 (389)
T PRK06849 118 WEFAEQARSL-----G--LSVPKTYLITDP--EAIRNFMFKTPHTPYVLKPIYSRFV----RRVDLLPKEAAL----KEL 180 (389)
T ss_pred HHHHHHHHHc-----C--CCCCCEEEeCCH--HHHHHHhhcCCCCcEEEEeCcccCC----CeEEEecCHHHh----ccc
Confidence 3445556665 8 566688888776 6776665554248999999764333 266665552211 111
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceE
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~i 130 (423)
.. ..-..++|||+++ |.|+.+-.... .|.++
T Consensus 181 ---~~------~~~~~~ivQe~I~-G~e~~~~~~~~-~G~v~ 211 (389)
T PRK06849 181 ---PI------SKDNPWVMQEFIQ-GKEYCSYSIVR-SGELR 211 (389)
T ss_pred ---cc------CCCCCeEEEEEec-CCeEEEEEEEE-CCEEE
Confidence 00 1113589999999 55765544443 35443
No 98
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=94.76 E-value=0.16 Score=51.21 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=53.2
Q ss_pred HHHHHHHhhhccCCCC-----CcCCceEEeeCCCHHhHH---hhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHH
Q 014514 11 SKRLLKEHLKRLAGLD-----LQICSAQVTESTDFSELT---NKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (423)
Q Consensus 11 ak~lL~~y~~~~~GI~-----ipv~~~~~~~~~~~~ea~---~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~ 82 (423)
.-.+|++. |+. ||+|+..++.+. +.+. .+...++ +|+|+||.+-+ |.++.-++.+..+.+.+.
T Consensus 111 ~~~~L~~~-----~~~~~~~~i~~P~t~v~~~~--~~al~~~~~~~~l~-~P~V~KPl~g~-Gss~gh~m~lv~~~~~L~ 181 (328)
T PLN02941 111 MLQVVADL-----KLSDGYGSVGVPKQLVVYDD--ESSIPDAVALAGLK-FPLVAKPLVAD-GSAKSHKMSLAYDQEGLS 181 (328)
T ss_pred HHHHHHHc-----CCcccCCCCCCCCEEEEcCH--HHHHHHHHHHhcCC-CCEEEeecccC-CCccccceEEecCHHHHH
Confidence 34556665 533 677799888876 3322 3345675 99999998865 466666888888887655
Q ss_pred HHHHHHhccchhccCCCCCceeeEEeeecCCCc
Q 014514 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ 115 (423)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~ 115 (423)
. +. . -+++||+++|+-
T Consensus 182 ~---------l~--~------p~~lQEfVnh~g 197 (328)
T PLN02941 182 K---------LE--P------PLVLQEFVNHGG 197 (328)
T ss_pred h---------cC--C------cEEEEEecCCCC
Confidence 3 11 1 289999998753
No 99
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=94.36 E-value=0.6 Score=46.98 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCC-H-HhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTD-F-SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~-~-~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
.-...|.++++. | +|++.....+..+ . ....+....++ +|++|||.-.. . -. |+..+.+.++.+.+
T Consensus 103 dk~~~K~~~~~~-----g--~~~a~~~~~~~~~~~~~~~e~~~~~l~-~p~~Vkp~~~g--S-Sv-g~~~v~~~~d~~~~ 170 (317)
T COG1181 103 DKIVTKRLFKAE-----G--LPVAPYVALTRDEYSSVIVEEVEEGLG-FPLFVKPAREG--S-SV-GRSPVNVEGDLQSA 170 (317)
T ss_pred cHHHHHHHHHHC-----C--CCccceeeeecccchhHHHHHhhcccC-CCEEEEcCCcc--c-ee-eEEEeeeccchHHH
Confidence 345567777887 8 5666776665321 1 22234445665 99999987541 1 01 44455555565554
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
.+..... -+.+++|+++. ++|+-+++..+..
T Consensus 171 ~e~a~~~----------d~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 171 LELAFKY----------DRDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred HHHHHHh----------CCceeeccCCC-cceEEEEecCCcc
Confidence 4433221 14589999999 9999999988754
No 100
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=92.39 E-value=0.99 Score=52.95 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=89.3
Q ss_pred HhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEE
Q 014514 41 SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 120 (423)
Q Consensus 41 ~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylg 120 (423)
+|.-++++.+| ||+-+|+----||| |++-+.+.++.+..+++..+-. |..+ +.|-+-+...+-+=+-
T Consensus 229 eegLeaae~IG-fPvMIKASEGGGGK----GIRkv~n~ddF~~lf~qv~~Ev-----PGSP---IFlMK~a~~ARHlEVQ 295 (2196)
T KOG0368|consen 229 EEGLEAAEKIG-FPVMIKASEGGGGK----GIRKVENEDDFKALFKQVQNEV-----PGSP---IFLMKLADQARHLEVQ 295 (2196)
T ss_pred HHHHHHHHhcC-CceEEEeccCCCCc----ceeeccchHHHHHHHHHHHhhC-----CCCc---eeeeecccCcceeeee
Confidence 88889999997 99999987655566 8999999999998888775422 2222 4566667777777788
Q ss_pred EEEcCCCceE-EeccCCccccccccCcEEEEecCcccCCCHHHHHHHHhCC-----ChhHHHHHHHHHHHHHHHhh----
Q 014514 121 IVSDRLGCTI-SFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATL-----PLEFRGKIGDFIMGVFAVFQ---- 190 (423)
Q Consensus 121 i~~D~~gp~i-l~~~~GGv~vE~~~d~~~~~pi~~~~~l~~~~~~~ll~g~-----~~~~~~~l~~~l~~L~~l~~---- 190 (423)
+..|..|-+| +|| .|... .....+++..- ++...+...+...+|++++-
T Consensus 296 lLaDqYGn~IsLfg----------RDCSi-----------QRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSA 354 (2196)
T KOG0368|consen 296 LLADQYGNVISLFG----------RDCSI-----------QRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSA 354 (2196)
T ss_pred hhhhhcCCEeEeec----------ccchH-----------HHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceec
Confidence 8889888776 555 45321 12233444422 34566777788888887742
Q ss_pred ----------ccCcceeeeeeeee
Q 014514 191 ----------DLDFSFIEMNPFTL 204 (423)
Q Consensus 191 ----------~~d~~~lEINPL~v 204 (423)
+.....||+||=+.
T Consensus 355 GTVEYLYsp~d~~fyFLELNPRLQ 378 (2196)
T KOG0368|consen 355 GTVEYLYSPDDGEYYFLELNPRLQ 378 (2196)
T ss_pred ceEEEEEecCCCcEEEEecCcccc
Confidence 22357899999553
No 101
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=92.32 E-value=2.9 Score=42.14 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhccCCCCCcCCceEEeeCCC--HHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe
Q 014514 10 DSKRLLKEHLKRLAGLDLQICSAQVTESTD--FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN 75 (423)
Q Consensus 10 eak~lL~~y~~~~~GI~ipv~~~~~~~~~~--~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~ 75 (423)
....+|++. | +|+|++..+.+.+ .+++.+... +..|||+||..-.+|| ||.+.
T Consensus 40 ~t~~lL~~a-----g--lpvP~T~~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~Gr----GI~~i 94 (317)
T TIGR02291 40 KTKIIAQAA-----G--ITVPELYGVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGK----GILVI 94 (317)
T ss_pred HHHHHHHHc-----C--CCCCCEEEecCchhhHHHHHHHHc--cCCCEEEEECCCCCcc----CeEEE
Confidence 345666776 8 5666877776651 122333222 2237999998876667 66665
No 102
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=92.17 E-value=2.1 Score=37.43 Aligned_cols=95 Identities=11% Similarity=0.185 Sum_probs=63.0
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
+|+|++.+++.+.++. .+ .+.+.+. +++-.+...+.. ..+++.+++.+. ...+|+ .||...
T Consensus 34 i~lg~~~s~e~~v~aa---~e-----~~adii~--iSsl~~~~~~~~---~~~~~~L~~~g~----~~i~vi--vGG~~~ 94 (132)
T TIGR00640 34 DVGPLFQTPEEIARQA---VE-----ADVHVVG--VSSLAGGHLTLV---PALRKELDKLGR----PDILVV--VGGVIP 94 (132)
T ss_pred EECCCCCCHHHHHHHH---HH-----cCCCEEE--EcCchhhhHHHH---HHHHHHHHhcCC----CCCEEE--EeCCCC
Confidence 7999999999776664 32 3444333 343333444444 888888887642 133444 477655
Q ss_pred HHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 382 QTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 382 ~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+-.+.|.+ +|+.- +|++-+++.+.+....+...
T Consensus 95 ~~~~~~l~~----~Gvd~-~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 95 PQDFDELKE----MGVAE-IFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred hHhHHHHHH----CCCCE-EECCCCCHHHHHHHHHHHHH
Confidence 666667887 89965 47788999999998887653
No 103
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=92.08 E-value=0.93 Score=45.84 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCCCcCCceEEeeCCCHHhHHhhccccC--CCcEEEeeccccCccCCcCeeEEeC-CHHHHHHHHH---------HHhcc
Q 014514 24 GLDLQICSAQVTESTDFSELTNKEPWLS--SSRLVVKPDMLFGKRGKSGLVALNL-DLAQVAEFVK---------GRLGT 91 (423)
Q Consensus 24 GI~ipv~~~~~~~~~~~~ea~~aa~~lg--~~pvVvK~qv~~g~r~k~GGV~l~~-~~ee~~~a~~---------~~~~~ 91 (423)
| +|+|++..+++. +|..++...++ +.|+.+||-.-.|++ |.++-. +.++...... +++..
T Consensus 119 ~--ipvp~~~~v~t~--~el~~a~~~l~~~~~~~CvKP~~g~gg~----GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~ 190 (329)
T PF15632_consen 119 G--IPVPPYWRVRTA--DELKAAYEELRFPGQPLCVKPAVGIGGR----GFRVLDESRDELDALFEPDSRRISLDELLAA 190 (329)
T ss_pred C--CCCCCEEEeCCH--HHHHHHHHhcCCCCceEEEecccCCCcc----eEEEEccCcchHHHhcCCCcceeCHHHHHHH
Confidence 8 577799999887 78777766653 345999999887777 666653 4444433222 11111
Q ss_pred chhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceE
Q 014514 92 EVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (423)
Q Consensus 92 ~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~i 130 (423)
+ .......-++|.|+++ |.|+.|=+..+. |.+|
T Consensus 191 -l---~~~~~~~~llvMeyL~-G~EySVD~l~~~-G~vi 223 (329)
T PF15632_consen 191 -L---QRSEEFPPLLVMEYLP-GPEYSVDCLADE-GRVI 223 (329)
T ss_pred -H---hccCCCCCcEEecCCC-CCeEEEEEEecC-CEEE
Confidence 1 0113567799999999 889999877776 5454
No 104
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=91.95 E-value=0.82 Score=45.65 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=65.2
Q ss_pred HHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhcc
Q 014514 12 KRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGT 91 (423)
Q Consensus 12 k~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~ 91 (423)
++||.+. ||++| + ...+| +| +. .||.||.+..-|+| |--++.|++|..+.+++++..
T Consensus 129 ~~lLekA-----gi~~P--~--~~~~P--ee-------Id-r~VIVK~pgAkggR----GyFiA~s~eef~ek~e~l~~~ 185 (361)
T COG1759 129 YKLLEKA-----GLRIP--K--KYKSP--EE-------ID-RPVIVKLPGAKGGR----GYFIASSPEEFYEKAERLLKR 185 (361)
T ss_pred HHHHHHc-----CCCCC--c--ccCCh--HH-------cC-CceEEecCCccCCc----eEEEEcCHHHHHHHHHHHHHc
Confidence 3556665 97777 3 33455 44 43 79999987765555 888999999999999999875
Q ss_pred chhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-CceEEec
Q 014514 92 EVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFS 133 (423)
Q Consensus 92 ~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~~ 133 (423)
-..+ ..-++...+|+++- |.-+|+-....+. +.+=++|
T Consensus 186 gvi~---~edlkna~IeEYv~-G~~f~~~yFyS~i~~~lEl~g 224 (361)
T COG1759 186 GVIT---EEDLKNARIEEYVV-GAPFYFHYFYSPIKDRLELLG 224 (361)
T ss_pred CCcc---hhhhhhceeeEEee-ccceeeeeeeccccCceeEee
Confidence 4431 12467788898886 5567777777766 3333444
No 105
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=89.77 E-value=1.1 Score=44.52 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcC--eeEEeCCHHHHHHHHHHHhccchhccCCCCC
Q 014514 24 GLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSG--LVALNLDLAQVAEFVKGRLGTEVEMGGCKGP 101 (423)
Q Consensus 24 GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~G--GV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~ 101 (423)
| +|.|.++.++|. .+ ..+.++. +||++||..-. +++-.+ =+....+.||.+.+...-.. ..-
T Consensus 126 g--l~~P~Ty~v~S~--~d--~~~~el~-FPvILKP~mgg-~~~~~araKa~~a~d~ee~k~a~~~a~e--------eig 189 (415)
T COG3919 126 G--LPYPKTYLVNSE--ID--TLVDELT-FPVILKPGMGG-SVHFEARAKAFTAADNEEMKLALHRAYE--------EIG 189 (415)
T ss_pred C--CCCcceEEecch--hh--hhhhhee-eeEEecCCCCC-cceeehhhheeeccCHHHHHHHHHHHHH--------hcC
Confidence 7 566688888865 22 2334564 89999987632 111111 13334566766655444321 112
Q ss_pred ceeeEEeeecCCCce--EEEEEEEcCCCceEEec
Q 014514 102 ITTFIVEPFVPHNQE--YYLSIVSDRLGCTISFS 133 (423)
Q Consensus 102 v~~vLVe~~v~~~~E--lylgi~~D~~gp~il~~ 133 (423)
...++||+|+|.+.| +......|...|+.+|.
T Consensus 190 pDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeft 223 (415)
T COG3919 190 PDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFT 223 (415)
T ss_pred CCceEEEEecCCCCcccchHHHHHhCCCchhhhh
Confidence 367899999998765 44445566666776664
No 106
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=89.54 E-value=0.7 Score=44.38 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=66.6
Q ss_pred EecCCCcEEEEEcCccHHHHHHHHHhccC-CCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCEEEEEe-cCcC
Q 014514 265 VLNPKGRIWTMVAGGGASVIYADTVGDLG-YASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGI 341 (423)
Q Consensus 265 ~v~l~g~I~ii~NG~G~~~~~~D~l~~~g-~gg~~aN~lDlgG~a~~-~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi 341 (423)
+|.-.|.|||++-.| .+|..++.+-- -|.--.-.+-+||||-. ..+-++|++.|+ ||..++++++- .||-
T Consensus 172 ~Ihk~G~IGIVSRSG---TLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~----D~~t~GIiliGEIGG~ 244 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSG---TLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLE----DPETEGIILIGEIGGS 244 (329)
T ss_pred ccccCCeeEEEecCC---ceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhc----CcccceEEEEeccCCh
Confidence 345579999998765 44556654310 01112345678888754 778899999998 99999988887 6776
Q ss_pred CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHH
Q 014514 342 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL 385 (423)
Q Consensus 342 ~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~ 385 (423)
+. +=| .+.+++++.. ...+|||.-+.|..+-.+|
T Consensus 245 AE--e~A------A~flk~~nSg--~~~kPVvsFIAG~tAppGr 278 (329)
T KOG1255|consen 245 AE--EEA------AEFLKEYNSG--STAKPVVSFIAGVTAPPGR 278 (329)
T ss_pred hh--HHH------HHHHHHhccC--CCCCceeEEeecccCCCcc
Confidence 53 323 3456665421 2468888777665544443
No 107
>PRK12458 glutathione synthetase; Provisional
Probab=88.52 E-value=2.3 Score=43.03 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=41.7
Q ss_pred cCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHH--HHHHHHHHhccchhccCCCCCceee
Q 014514 28 QICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQ--VAEFVKGRLGTEVEMGGCKGPITTF 105 (423)
Q Consensus 28 pv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee--~~~a~~~~~~~~~~~~~~~~~v~~v 105 (423)
++|++.++.+. +++.+.....++.|+|+||..-.+|+ ||.+..+.++ +....+.+.. -..+
T Consensus 140 ~vP~T~v~~~~--~~~~~~~~~~~~~pvVvKPl~G~gG~----gV~~v~~~~~~~~~~ile~~~~-----------~~~~ 202 (338)
T PRK12458 140 VRPTTHISRNK--EYIREFLEESPGDKMILKPLQGSGGQ----GVFLIEKSAQSNLNQILEFYSG-----------DGYV 202 (338)
T ss_pred CCCCEEEeCCH--HHHHHHHHHcCCCeEEEEECCCCCcc----CeEEEecCChhhHHHHHHHHhh-----------CCCE
Confidence 45577777665 67776666665345999998866666 6766543332 2222222211 1248
Q ss_pred EEeeecCC
Q 014514 106 IVEPFVPH 113 (423)
Q Consensus 106 LVe~~v~~ 113 (423)
+||++++.
T Consensus 203 ivQeyI~~ 210 (338)
T PRK12458 203 IAQEYLPG 210 (338)
T ss_pred EEEEcccC
Confidence 99999984
No 108
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.24 E-value=6.8 Score=33.40 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=57.4
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
.-+++|.+.+++.+..+.. + .+|+ . |-+++......+.+ +.+++.+++... + .+.+..||.
T Consensus 29 ~vi~lG~~vp~e~~~~~a~---~---~~~d--~--V~iS~~~~~~~~~~---~~~~~~L~~~~~-----~-~i~i~~GG~ 89 (122)
T cd02071 29 EVIYTGLRQTPEEIVEAAI---Q---EDVD--V--IGLSSLSGGHMTLF---PEVIELLRELGA-----G-DILVVGGGI 89 (122)
T ss_pred EEEECCCCCCHHHHHHHHH---H---cCCC--E--EEEcccchhhHHHH---HHHHHHHHhcCC-----C-CCEEEEECC
Confidence 3478999999997766643 2 1444 2 33343444444444 778888877531 1 355667876
Q ss_pred CHHHHHHHHHhhccccCCceeecCCCCCHHHHHHH
Q 014514 380 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 414 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~ 414 (423)
...+-.+.|.+ +|+--+ |++-+++++.+..
T Consensus 90 ~~~~~~~~~~~----~G~d~~-~~~~~~~~~~~~~ 119 (122)
T cd02071 90 IPPEDYELLKE----MGVAEI-FGPGTSIEEIIDK 119 (122)
T ss_pred CCHHHHHHHHH----CCCCEE-ECCCCCHHHHHHH
Confidence 66666677777 898765 5567777777654
No 109
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=86.85 E-value=7.6 Score=38.76 Aligned_cols=125 Identities=16% Similarity=0.132 Sum_probs=75.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCce----eeccCCCCHHHHHHHHHHHHhhhccCC---CCCEEEEEecCcC
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNY----AEYSGAPNEEEVLQYARVVIDCATADP---DGRKRALLIGGGI 341 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~----lDlgG~a~~~~~~~a~~~ll~~~~~~~---~~~~vlv~~~ggi 341 (423)
.-+||+||.-.|.|+ -|.+.....-....++ .=+=|.-.++.+.+|++.+-+ .+ .+|+|+|.=+||-
T Consensus 14 p~~I~vITs~~gAa~--~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~----~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 14 PKRIAVITSPTGAAI--QDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANE----MGQADDFDVIIIIRGGGS 87 (319)
T ss_pred CCEEEEEeCCchHHH--HHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHh----ccccccccEEEEecCCCC
Confidence 678999999988776 6777653111112333 223466677889999988865 33 5664444445552
Q ss_pred CchhHHhh-hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 342 ANFTDVAT-TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 342 ~~~~~va~-~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+|.+. .=+.+++|+.+. +.||++-+|-.....=-....+ . ...||+.|++.++....
T Consensus 88 --~eDL~~FN~e~varai~~~-------~~PvisaIGHe~D~ti~D~vAd------~------ra~TPtaaAe~~~~~~~ 146 (319)
T PF02601_consen 88 --IEDLWAFNDEEVARAIAAS-------PIPVISAIGHETDFTIADFVAD------L------RAPTPTAAAELIVPDRR 146 (319)
T ss_pred --hHHhcccChHHHHHHHHhC-------CCCEEEecCCCCCchHHHHHHH------h------hCCCHHHHHHHHhhhHH
Confidence 233332 114455555443 6999999998764433333332 1 23799999998876544
No 110
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=86.13 E-value=12 Score=32.78 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=64.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
.-+++|-+.+++.+.++. . ..+.+.|.+....+ .....+ +.+++.+++.+. .+ +.+.+||.
T Consensus 33 eVi~LG~~vp~e~i~~~a---~-----~~~~d~V~lS~~~~--~~~~~~---~~~~~~L~~~~~----~~--~~i~vGG~ 93 (137)
T PRK02261 33 EVINLGVMTSQEEFIDAA---I-----ETDADAILVSSLYG--HGEIDC---RGLREKCIEAGL----GD--ILLYVGGN 93 (137)
T ss_pred EEEECCCCCCHHHHHHHH---H-----HcCCCEEEEcCccc--cCHHHH---HHHHHHHHhcCC----CC--CeEEEECC
Confidence 449999999999887775 2 23455555544222 333444 777788877632 23 34556664
Q ss_pred C------HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 N------YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~------~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
- .++-.+.|++ .|+. .+|++-+++++++....+..++
T Consensus 94 ~~~~~~~~~~~~~~l~~----~G~~-~vf~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 94 LVVGKHDFEEVEKKFKE----MGFD-RVFPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred CCCCccChHHHHHHHHH----cCCC-EEECcCCCHHHHHHHHHHHhcc
Confidence 3 4556677877 8974 4677889999999988876654
No 111
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=86.08 E-value=1.4 Score=39.49 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=25.5
Q ss_pred CcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 53 SRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 53 ~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
+|+|+||.--.|+. ||.+..+.+++..... ...++||++. |.++.+++..+..+
T Consensus 32 ~~~viKp~~G~Gg~----~i~~~~~~~~~~~~~~----------------~~~i~Qe~i~-G~~~Sv~~l~~~~~ 85 (161)
T PF02655_consen 32 GPWVIKPRDGAGGE----GIRIVDSEDELEEFLN----------------KLRIVQEFIE-GEPYSVSFLASGGG 85 (161)
T ss_dssp SSEEEEESS-----------B--SS--TTE-----------------------EEEE----SEEEEEEEEE-SSS
T ss_pred CcEEEEeCCCCCCC----CeEEECCchhhccccc----------------cceEEeeeeC-CEEeEEEEEEeCCc
Confidence 79999987655444 5665556554332211 1128999998 88999999888754
No 112
>PRK06091 membrane protein FdrA; Validated
Probab=85.98 E-value=6.4 Score=42.45 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=68.3
Q ss_pred CceeeccCCCC----------H-HHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhh-hh
Q 014514 299 GNYAEYSGAPN----------E-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESK-LK 366 (423)
Q Consensus 299 aN~lDlgG~a~----------~-~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~-~~ 366 (423)
-.++|+|-|.. + -|.....+. .. ||.+..||+-+--|.-...+-| ..++.++++.... ..
T Consensus 373 h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~-a~----dp~~~VillD~vlGyGah~dpa---~~l~~ai~~~~~~~~~ 444 (555)
T PRK06091 373 HQIIDLGDDFYTVGRPHPMIDPTLRNQLIADL-GA----KPQVRVLLLDVVIGFGATADPA---GSLVSAIQKACAARAD 444 (555)
T ss_pred ceEEecCcccccCCCCCCCcChHHHHHHHHHh-cc----CCcceEEEEEeeeccCCCCChH---HHHHHHHHHHHhhhhc
Confidence 36799998853 2 233332222 23 8999988888833333334444 5555555554211 11
Q ss_pred cccceEEEEeCCCCH-----HHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 367 AARMHIFVRRGGPNY-----QTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 367 ~~~~pvv~rl~G~~~-----~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+.+++++-+.||.. ++..+.|.+ +|+-++ +|-.+|++.|.++++
T Consensus 445 ~r~l~~v~~v~GT~~DpQ~~~~q~~~L~~----aGv~v~-----~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 445 GQPLYAIATVTGTERDPQCRSQQIATLED----AGIAVV-----DSLPEATLLAAALIR 494 (555)
T ss_pred CCceEEEEEEeCCCCCCcCHHHHHHHHHh----CCeEEE-----cCcHHHHHHHHHHhh
Confidence 245778888999754 477888988 999776 788999999999875
No 113
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=84.88 E-value=5.5 Score=36.19 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=48.5
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec--CcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 303 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 303 DlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~--ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
+..|..+.+.+.++++.+.+ ||++++|++.+. || +... . +-+-++++... ..++||++.+.|.-
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~----d~~v~~vvl~~~~~gg--~~~~-~---~~~~~~i~~~~----~~~kpVia~v~G~a 82 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARL----DPKVKAIVLRVNSPGG--SVTA-S---EVIRAELAAAR----AAGKPVVASGGGNA 82 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhc----CCCceEEEEEeeCCCc--CHHH-H---HHHHHHHHHHH----hCCCCEEEEECCch
Confidence 55667788899999988887 999999998883 33 2111 1 23333444432 24799999999876
Q ss_pred HHHHHHHHH
Q 014514 381 YQTGLAKMR 389 (423)
Q Consensus 381 ~~~a~~~l~ 389 (423)
...+-.+.-
T Consensus 83 ~g~g~~la~ 91 (177)
T cd07014 83 ASGGYWIST 91 (177)
T ss_pred hHHHHHHHH
Confidence 665554443
No 114
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=84.14 E-value=19 Score=37.87 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=63.7
Q ss_pred cEEEEEcCccH--------HHHHHHHHhccCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCCEEEEEecCcC
Q 014514 271 RIWTMVAGGGA--------SVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATADPDGRKRALLIGGGI 341 (423)
Q Consensus 271 ~I~ii~NG~G~--------~~~~~D~l~~~g~gg~~aN~lDlgG~a-~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi 341 (423)
+||+++.+-++ ..-..+.+... ....+.+.++.+--. +.+...++.+..-. + +++++++.+++.-
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~----~-~~d~ii~~~~tf~ 75 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADL-LNELPVEVVDKPEVTGTPDEARKAAEEFNE----A-NCDGLIVWMHTFG 75 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHH-HhcCCceEEecCcccCCHHHHHHHHHHHhh----c-CCcEEEEcccccc
Confidence 46777777771 22222333221 122345666665444 77888888777654 4 7888888875432
Q ss_pred CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCC----------CHHHHHHHHHhhccccCCce-eecCCCCC
Q 014514 342 ANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGP----------NYQTGLAKMRALGEELGIPL-EVYGPEAT 407 (423)
Q Consensus 342 ~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~----------~~~~a~~~l~~~~~~~gip~-~~~~~~~~ 407 (423)
.. +.++.++++. ++||+.+ ...+ +..-|..-+.....+.|+|. +++|...+
T Consensus 76 ~~--------~~~~~~~~~~-------~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~g~~~d 138 (452)
T cd00578 76 PA--------KMWIAGLSEL-------RKPVLLLATQFNREIPDFMNLNQSACGLREFGNILARLGIPFKVVYGHWKD 138 (452)
T ss_pred cH--------HHHHHHHHhc-------CCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHHHcCCceeEEECCCCC
Confidence 21 3445555443 6898888 5553 33323332333333489995 55664443
No 115
>PRK10949 protease 4; Provisional
Probab=83.29 E-value=3.7 Score=45.11 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 306 GAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|....+.+.+.++...+ ||++++|++-+ |||-+-.. +-|-++++..+. .+|||++.+++.-
T Consensus 345 g~~~~~~~~~~l~~a~~----D~~vkaVvLrInSpGGs~~as------e~i~~~i~~~r~----~gKPVvas~~~~a 407 (618)
T PRK10949 345 GNVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS------EVIRAELAAARA----AGKPVVVSMGGMA 407 (618)
T ss_pred CCcCHHHHHHHHHHHHh----CCCCcEEEEEecCCCCcHHHH------HHHHHHHHHHHh----cCCcEEEEECCCC
Confidence 55667888888888877 99999999988 66533221 334444444321 3699999998753
No 116
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=81.04 E-value=6 Score=39.76 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 307 APNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 307 ~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
..+.+.+.+.++.+.. ||++++|++.+ |||.+-.. +-|.++++++.. .+ ||++.+++..
T Consensus 79 ~~~~~~~~~~l~~~~~----~~~vk~vvL~inSPGG~v~as------~~i~~~l~~l~~----~~-PV~v~v~~~A 139 (317)
T COG0616 79 FIGGDDIEEILRAARA----DPSVKAVVLRINSPGGSVVAS------ELIARALKRLRA----KK-PVVVSVGGYA 139 (317)
T ss_pred cccHHHHHHHHHHHhc----CCCCceEEEEEECcCCchhHH------HHHHHHHHHHhh----cC-CEEEEECCee
Confidence 5677788888888887 99999987777 88866433 455666777653 23 9999998854
No 117
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=80.82 E-value=16 Score=36.44 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHH
Q 014514 306 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL 385 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~ 385 (423)
|..+.+.+.+.++.+++ ..+++++++-.+|-.......+. ..+++...+.-. .++||++-.|+++-+++.
T Consensus 20 g~vD~~a~~~lv~~li~-----~Gv~gi~~~GttGE~~~Ls~eEr-~~v~~~~v~~~~----grvpviaG~g~~~t~eai 89 (299)
T COG0329 20 GSVDEEALRRLVEFLIA-----AGVDGLVVLGTTGESPTLTLEER-KEVLEAVVEAVG----GRVPVIAGVGSNSTAEAI 89 (299)
T ss_pred CCcCHHHHHHHHHHHHH-----cCCCEEEECCCCccchhcCHHHH-HHHHHHHHHHHC----CCCcEEEecCCCcHHHHH
Confidence 77999999999999985 67999999986554443333321 234444444432 368999999999999998
Q ss_pred HHHHhhccccC------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 386 AKMRALGEELG------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 386 ~~l~~~~~~~g------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++-+. .++.| +|-|.+ ..+.++....|...+.+
T Consensus 90 ~lak~-a~~~Gad~il~v~PyY~--k~~~~gl~~hf~~ia~a 128 (299)
T COG0329 90 ELAKH-AEKLGADGILVVPPYYN--KPSQEGLYAHFKAIAEA 128 (299)
T ss_pred HHHHH-HHhcCCCEEEEeCCCCc--CCChHHHHHHHHHHHHh
Confidence 87764 23345 233333 25566666666666554
No 118
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=79.42 E-value=5.9 Score=43.25 Aligned_cols=62 Identities=24% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 014514 307 APNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
Q Consensus 307 ~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~ 382 (423)
....+.+.+.++.+.+ ||++++|++.+ |||-+-+. +.|-++++..+. .++||++.++|.-..
T Consensus 328 ~~~~~~~~~~l~~a~~----D~~VkaIVLrinSpGGs~~as------e~i~~~i~~~~~----~gKPVva~~~g~aaS 391 (584)
T TIGR00705 328 NTGGDTVAALLRVARS----DPDIKAVVLRINSPGGSVFAS------EIIRRELARAQA----RGKPVIVSMGAMAAS 391 (584)
T ss_pred ccCHHHHHHHHHHHhh----CCCceEEEEEecCCCCCHHHH------HHHHHHHHHHHh----CCCcEEEEECCcccc
Confidence 3455677777777776 99999999988 77754443 333344444332 359999999985443
No 119
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=78.91 E-value=10 Score=35.54 Aligned_cols=70 Identities=20% Similarity=0.157 Sum_probs=44.1
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
.|..+.+.+.++++.+.+ ||+++++++.+++.-.+.... +.+.++++... ..++||++.+.|.....+
T Consensus 18 ~~~~~~~~l~~~l~~a~~----d~~v~~ivL~~~s~Gg~~~~~----~~~~~~l~~~~----~~~kpVia~v~g~a~s~g 85 (211)
T cd07019 18 QGNVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS----EVIRAELAAAR----AAGKPVVVSAGGAAASGG 85 (211)
T ss_pred CCccCHHHHHHHHHHHhh----CCCceEEEEEEcCCCcCHHHH----HHHHHHHHHHH----hCCCCEEEEECCeehhHH
Confidence 355667888888888887 999999999874222222221 22333343332 137999999988754444
Q ss_pred HH
Q 014514 385 LA 386 (423)
Q Consensus 385 ~~ 386 (423)
-.
T Consensus 86 y~ 87 (211)
T cd07019 86 YW 87 (211)
T ss_pred HH
Confidence 33
No 120
>PLN02417 dihydrodipicolinate synthase
Probab=78.52 E-value=23 Score=34.76 Aligned_cols=107 Identities=9% Similarity=0.023 Sum_probs=71.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.|=-|..+.+.+.+-++.++ +.++++++++-.+|=...-...+ -.-+++...+... .++||++..+.+
T Consensus 11 TPf~~~g~iD~~~~~~~i~~l~-----~~Gv~Gi~~~GstGE~~~ls~~E-r~~~~~~~~~~~~----~~~pvi~gv~~~ 80 (280)
T PLN02417 11 TPYLPDGRFDLEAYDSLVNMQI-----ENGAEGLIVGGTTGEGQLMSWDE-HIMLIGHTVNCFG----GKIKVIGNTGSN 80 (280)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccCcchhhCCHHH-HHHHHHHHHHHhC----CCCcEEEECCCc
Confidence 4566678999999999999998 47899999988533222211111 1334444333321 368999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhH
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+..++.+..+.+ +++|. |.| | ..|.++.++.+-+++.
T Consensus 81 ~t~~~i~~a~~a-~~~Gadav~~~~P~y-~--~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 81 STREAIHATEQG-FAVGMHAALHINPYY-G--KTSQEGLIKHFETVLD 124 (280)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEcCCcc-C--CCCHHHHHHHHHHHHh
Confidence 999998887753 33563 433 3 2566777777776654
No 121
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=78.38 E-value=12 Score=38.65 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=63.7
Q ss_pred cEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCce-eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe---c
Q 014514 263 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY-AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 338 (423)
Q Consensus 263 ~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~-lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~---~ 338 (423)
.|++++++++-++.||. .|=--.|.+..+ |.+.-.. .+-|-..+++.+.++++ + +|+++.|.+.| .
T Consensus 74 ~sl~~pgdkVLv~~nG~-FG~R~~~ia~~~--g~~v~~~~~~wg~~v~p~~v~~~L~---~----~~~~~~V~~vH~ETS 143 (383)
T COG0075 74 ASLVEPGDKVLVVVNGK-FGERFAEIAERY--GAEVVVLEVEWGEAVDPEEVEEALD---K----DPDIKAVAVVHNETS 143 (383)
T ss_pred HhccCCCCeEEEEeCCh-HHHHHHHHHHHh--CCceEEEeCCCCCCCCHHHHHHHHh---c----CCCccEEEEEeccCc
Confidence 35688999999999998 888888999884 5543222 33567788999999875 4 89999999999 4
Q ss_pred CcCCchhHHhhhHHHHHHHHHHhh
Q 014514 339 GGIANFTDVATTFNGIIRALREKE 362 (423)
Q Consensus 339 ggi~~~~~va~~~~~ii~a~~~~~ 362 (423)
+|+.+.. +.|.++.+++.
T Consensus 144 TGvlnpl------~~I~~~~k~~g 161 (383)
T COG0075 144 TGVLNPL------KEIAKAAKEHG 161 (383)
T ss_pred ccccCcH------HHHHHHHHHcC
Confidence 7777632 56778888874
No 122
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=78.36 E-value=8 Score=38.63 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred cCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe-CCHHHHHHHHHHHhccchhccCCCCCceeeE
Q 014514 28 QICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVKGRLGTEVEMGGCKGPITTFI 106 (423)
Q Consensus 28 pv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~-~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vL 106 (423)
|+|++.++.+. +++.+.....+ |+|+||..-.+|+ ||... .+..+.. ...+.+.. . + -..++
T Consensus 133 ~vP~T~v~~~~--~~~~~~~~~~g--~vVvKPl~G~~G~----gv~~v~~~~~~~~-~~~~~~~~-~---~----~~~~~ 195 (312)
T TIGR01380 133 VIPPTLVTRDK--AEIRAFLAEHG--DIVLKPLDGMGGE----GIFRLDPGDPNFN-SILETMTQ-R---G----REPVM 195 (312)
T ss_pred CCCCEEEeCCH--HHHHHHHHHcC--CEEEEECCCCCCc----eEEEEcCCCccHH-HHHHHHHh-c---c----CCcEE
Confidence 56688776655 67777666663 8999998866555 66543 3222222 11122111 0 1 13589
Q ss_pred EeeecCC--CceEEE
Q 014514 107 VEPFVPH--NQEYYL 119 (423)
Q Consensus 107 Ve~~v~~--~~Elyl 119 (423)
+|++++. +.++.+
T Consensus 196 vQ~yI~~~~~~D~Rv 210 (312)
T TIGR01380 196 AQRYLPEIKEGDKRI 210 (312)
T ss_pred EEeccccccCCCEEE
Confidence 9999973 345555
No 123
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=78.17 E-value=25 Score=34.84 Aligned_cols=108 Identities=13% Similarity=0.104 Sum_probs=70.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.|=-|..+.+.+.+-++.++ +..+++++++-.+|=...-...+- ..+++...+... .++||++..+.+
T Consensus 10 TPf~~dg~iD~~~l~~lv~~~~-----~~Gv~gi~v~GstGE~~~Ls~~Er-~~l~~~~~~~~~----g~~pvi~gv~~~ 79 (294)
T TIGR02313 10 TPFKRNGDIDEEALRELIEFQI-----EGGSHAISVGGTSGEPGSLTLEER-KQAIENAIDQIA----GRIPFAPGTGAL 79 (294)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccCcccccCCHHHH-HHHHHHHHHHhC----CCCcEEEECCcc
Confidence 5677779999999999999998 478999998884332222222211 233443333221 368999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ ++.|. |.| |. .+.++.++.+..++..
T Consensus 80 ~t~~ai~~a~~A-~~~Gad~v~v~pP~y-~~--~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 80 NHDETLELTKFA-EEAGADAAMVIVPYY-NK--PNQEALYDHFAEVADA 124 (294)
T ss_pred hHHHHHHHHHHH-HHcCCCEEEEcCccC-CC--CCHHHHHHHHHHHHHh
Confidence 988887777653 34563 443 32 4667888877776654
No 124
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=77.87 E-value=24 Score=34.76 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=70.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcC-CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI-ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi-~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-|.|=-|..+.+.+.+-++.+++ ..++++++++-.+|= ...+. . --..+++...+... .++||++..|.
T Consensus 13 TPf~~dg~iD~~~~~~li~~l~~----~~Gv~gi~v~GstGE~~~Ls~-e-Er~~~~~~~~~~~~----~~~~viagvg~ 82 (293)
T PRK04147 13 TPFDEDGQIDEQGLRRLVRFNIE----KQGIDGLYVGGSTGEAFLLST-E-EKKQVLEIVAEEAK----GKVKLIAQVGS 82 (293)
T ss_pred CcCCCCCCcCHHHHHHHHHHHHh----cCCCCEEEECCCccccccCCH-H-HHHHHHHHHHHHhC----CCCCEEecCCC
Confidence 55677799999999999999883 278999998884332 22111 1 11445554444332 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++.+++.+..+.+ ++.|. |.| | ..+.++.++.+-+.+.+
T Consensus 83 ~~t~~ai~~a~~a-~~~Gad~v~v~~P~y-~--~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 83 VNTAEAQELAKYA-TELGYDAISAVTPFY-Y--PFSFEEICDYYREIIDS 128 (293)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEeCCcC-C--CCCHHHHHHHHHHHHHh
Confidence 8888887766543 34565 655 2 24667777777776654
No 125
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=76.99 E-value=42 Score=29.26 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=57.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
.-+|+|-+-+++.+.++. . +.+.+.|.+..- ++...... +.+++.+++.+. ++.|| -.||.
T Consensus 29 eVidLG~~v~~e~~v~aa---~-----~~~adiVglS~L--~t~~~~~~---~~~~~~l~~~gl----~~v~v--ivGG~ 89 (128)
T cd02072 29 NVVNLGVLSPQEEFIDAA---I-----ETDADAILVSSL--YGHGEIDC---KGLREKCDEAGL----KDILL--YVGGN 89 (128)
T ss_pred EEEECCCCCCHHHHHHHH---H-----HcCCCEEEEecc--ccCCHHHH---HHHHHHHHHCCC----CCCeE--EEECC
Confidence 449999999999888775 2 235555555442 22222223 777888877642 24444 44554
Q ss_pred ------CHHHHHHHHHhhccccCCceeecCCCCCHHHHHHH
Q 014514 380 ------NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 414 (423)
Q Consensus 380 ------~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~ 414 (423)
..++-.+.|++ +|+. -+|++.+++++++..
T Consensus 90 ~~i~~~d~~~~~~~L~~----~Gv~-~vf~pgt~~~~i~~~ 125 (128)
T cd02072 90 LVVGKQDFEDVEKRFKE----MGFD-RVFAPGTPPEEAIAD 125 (128)
T ss_pred CCCChhhhHHHHHHHHH----cCCC-EEECcCCCHHHHHHH
Confidence 22344567887 8985 578888999988864
No 126
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=76.18 E-value=27 Score=34.86 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec-CcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 383 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~-ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~ 383 (423)
.|..+.+.+.+.++.++ +..+++++++-. |-....+. . --+.++++..+... .++||++..+.++.++
T Consensus 23 ~g~iD~~~l~~lv~~li-----~~Gv~Gi~v~GstGE~~~Lt~-e-Er~~v~~~~~~~~~----grvpvi~Gv~~~~t~~ 91 (309)
T cd00952 23 TDTVDLDETARLVERLI-----AAGVDGILTMGTFGECATLTW-E-EKQAFVATVVETVA----GRVPVFVGATTLNTRD 91 (309)
T ss_pred CCCcCHHHHHHHHHHHH-----HcCCCEEEECcccccchhCCH-H-HHHHHHHHHHHHhC----CCCCEEEEeccCCHHH
Confidence 37899999999999988 478999999884 33322211 1 11445555444332 3699999999988898
Q ss_pred HHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 384 GLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 384 a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+.+..+.+ ++.|. |.| |. .+.++.++.+-.++.+
T Consensus 92 ai~~a~~A-~~~Gad~vlv~~P~y-~~--~~~~~l~~yf~~va~a 132 (309)
T cd00952 92 TIARTRAL-LDLGADGTMLGRPMW-LP--LDVDTAVQFYRDVAEA 132 (309)
T ss_pred HHHHHHHH-HHhCCCEEEECCCcC-CC--CCHHHHHHHHHHHHHh
Confidence 88877653 23452 333 32 4667777777776654
No 127
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=75.35 E-value=32 Score=33.96 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=70.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCC-CCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPD-GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~-~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-|.|=-|..+.+.+.+-++.+++ .+ +++++++-.+|-...-...+ -+.++++..+... .++||++..++
T Consensus 10 TPf~~dg~iD~~~~~~~i~~~i~-----~G~v~gi~~~GstGE~~~Lt~eE-r~~~~~~~~~~~~----~~~pvi~gv~~ 79 (290)
T TIGR00683 10 VSFNEDGTINEKGLRQIIRHNID-----KMKVDGLYVGGSTGENFMLSTEE-KKEIFRIAKDEAK----DQIALIAQVGS 79 (290)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh-----CCCcCEEEECCcccccccCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 45666689999999999999884 56 99999887433211111111 1445555444432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
.+.+++.+..+.+ ++.|. |-|.| ..|.++.+..+-+.+.+
T Consensus 80 ~~t~~~i~la~~a-~~~Gad~v~v~~P~y~--~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 80 VNLKEAVELGKYA-TELGYDCLSAVTPFYY--KFSFPEIKHYYDTIIAE 125 (290)
T ss_pred CCHHHHHHHHHHH-HHhCCCEEEEeCCcCC--CCCHHHHHHHHHHHHhh
Confidence 8888887777652 34563 33333 35778888888777654
No 128
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=75.08 E-value=28 Score=36.61 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=71.7
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCC-Cce----eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASEL-GNY----AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 343 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~-aN~----lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~ 343 (423)
.-+||+||.-.|.+. -|.+.....- -| .++ .-+=|.-.+..+.+|++.+-. .++.|.|+|.=+||-
T Consensus 129 p~~i~vits~~~aa~--~D~~~~~~~r-~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~----~~~~dviii~RGGGs-- 199 (432)
T TIGR00237 129 PKRVGVITSQTGAAL--ADILHILKRR-DPSLKVVIYPTLVQGEGAVQSIVESIELANT----KNECDVLIVGRGGGS-- 199 (432)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHhh-CCCceEEEecccccCccHHHHHHHHHHHhhc----CCCCCEEEEecCCCC--
Confidence 678999999988765 5776653111 14 333 334466677888888887754 455675444445542
Q ss_pred hhHHhh-hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 344 FTDVAT-TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 344 ~~~va~-~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
.+|.+. .=+.+++++.. .+.||++-+|-.....=-..-.+ . ...||++|++.++-
T Consensus 200 ~eDL~~Fn~e~~~rai~~-------~~~Pvis~iGHe~D~ti~D~vAd------~------ra~TPtaaae~~~p 255 (432)
T TIGR00237 200 LEDLWSFNDEKVARAIFL-------SKIPIISAVGHETDFTISDFVAD------L------RAPTPSAAAEIVSP 255 (432)
T ss_pred HHHhhhcCcHHHHHHHHc-------CCCCEEEecCcCCCccHHHHhhh------c------cCCCcHHHHHHhCc
Confidence 244442 11445555533 37999999998653322222222 2 23799999988764
No 129
>PRK05246 glutathione synthetase; Provisional
Probab=73.68 E-value=12 Score=37.38 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=43.3
Q ss_pred cCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe-CCHHHHHHHHHHHhccchhccCCCCCceeeE
Q 014514 28 QICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVKGRLGTEVEMGGCKGPITTFI 106 (423)
Q Consensus 28 pv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~-~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vL 106 (423)
|+|++.++++. +++.+..... .|+|+||..-.+|+ ||... .+..+..... +.+... + -..++
T Consensus 134 ~vP~T~~~~~~--~~~~~~~~~~--~~vVlKP~~G~~G~----gV~~i~~~~~~~~~~~-~~l~~~----~----~~~~l 196 (316)
T PRK05246 134 LMPPTLVTRDK--AEIRAFRAEH--GDIILKPLDGMGGA----GIFRVKADDPNLGSIL-ETLTEH----G----REPVM 196 (316)
T ss_pred cCCCEEEeCCH--HHHHHHHHHC--CCEEEEECCCCCcc----ceEEEeCCCccHHHHH-HHHHHc----c----CCeEE
Confidence 45577776655 6676666666 38999999876666 66665 3322222221 222110 1 13589
Q ss_pred EeeecCC--CceEEE
Q 014514 107 VEPFVPH--NQEYYL 119 (423)
Q Consensus 107 Ve~~v~~--~~Elyl 119 (423)
||++++. +.++.+
T Consensus 197 vQ~~I~~~~~~D~Rv 211 (316)
T PRK05246 197 AQRYLPEIKEGDKRI 211 (316)
T ss_pred EEeccccCCCCCEEE
Confidence 9999974 345443
No 130
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=71.40 E-value=16 Score=34.58 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
+...+.+.+.++++-+.+ ||++++|++.+ +|| ...+ .+.+.++++..+. .++||++...+
T Consensus 26 ~~~~~~~~l~~~l~~a~~----d~~ik~vvL~~~s~gg--~~~~----~~el~~~i~~~~~----~~kpVia~~~~ 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAE----DDRIKGIVLDLDGLSG--GLAK----LEELRQALERFRA----SGKPVIAYADG 87 (222)
T ss_pred cCCccHHHHHHHHHHHhc----CCCeEEEEEECCCCCC--CHHH----HHHHHHHHHHHHH----hCCeEEEEeCC
Confidence 345566777777777766 99999999998 443 2222 1445555555432 36899998765
No 131
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=70.71 E-value=47 Score=32.98 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=68.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.|=-|..+.+.+.+-++.++ +.++++++++-.+|-...-...+ -..+++...+.-. .++||++..++
T Consensus 17 TPf~~dg~iD~~~l~~li~~l~-----~~Gv~Gi~~~GstGE~~~Lt~eE-r~~~~~~~~~~~~----~~~pvi~gv~~- 85 (303)
T PRK03620 17 TPFDADGSFDEAAYREHLEWLA-----PYGAAALFAAGGTGEFFSLTPDE-YSQVVRAAVETTA----GRVPVIAGAGG- 85 (303)
T ss_pred CCCCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECcCCcCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC-
Confidence 5566678999999999999988 46899999988433222221111 1344444434321 36899999876
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++|. |=|++ ..+.++.++.+-.++.+
T Consensus 86 ~t~~~i~~~~~a-~~~Gadav~~~pP~y~--~~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 86 GTAQAIEYAQAA-ERAGADGILLLPPYLT--EAPQEGLAAHVEAVCKS 130 (303)
T ss_pred CHHHHHHHHHHH-HHhCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 778888777653 33553 22222 24667777777776654
No 132
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.41 E-value=50 Score=32.33 Aligned_cols=108 Identities=10% Similarity=0.109 Sum_probs=69.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.|=-|..+.+.+.+-++.++ +..+++++++-.+|-...-...+ -+.+++...+... .++||++..+.+
T Consensus 8 TPf~~~g~iD~~~~~~~i~~l~-----~~Gv~Gi~~~GstGE~~~Ls~~E-r~~~~~~~~~~~~----~~~~vi~gv~~~ 77 (285)
T TIGR00674 8 TPFKEDGSVDFAALEKLIDFQI-----ENGTDAIVVVGTTGESPTLSHEE-HKKVIEFVVDLVN----GRVPVIAGTGSN 77 (285)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccCcccccCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCCc
Confidence 4556678999999999999888 47899999887433222222221 1344444444321 268999999998
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+.+++.+..+.+ +..|. |.| |. .+.++.++.+-.++.+
T Consensus 78 s~~~~i~~a~~a-~~~Gad~v~v~pP~y-~~--~~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 78 ATEEAISLTKFA-EDVGADGFLVVTPYY-NK--PTQEGLYQHFKAIAEE 122 (285)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEcCCcC-CC--CCHHHHHHHHHHHHhc
Confidence 888887777653 33452 433 32 4667777777766654
No 133
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=70.37 E-value=46 Score=32.67 Aligned_cols=109 Identities=12% Similarity=0.090 Sum_probs=69.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.|=.|..+.+.+.+-++.++ +..+++++++-..|-...-...+ -..+++...+... .++||++..++.
T Consensus 11 TPf~~dg~iD~~~l~~~i~~l~-----~~Gv~gi~~~Gs~GE~~~ls~~E-r~~~~~~~~~~~~----~~~~vi~gv~~~ 80 (292)
T PRK03170 11 TPFKEDGSVDFAALRKLVDYLI-----ANGTDGLVVVGTTGESPTLTHEE-HEELIRAVVEAVN----GRVPVIAGTGSN 80 (292)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECCcCCccccCCHHH-HHHHHHHHHHHhC----CCCcEEeecCCc
Confidence 4566678999999999999998 47899999987533222211111 1334444444322 258999999998
Q ss_pred CHHHHHHHHHhhccccCCc------eeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip------~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+.+++.+..+.+ +++|.. =++|. .+.++.++.+-+++.+
T Consensus 81 ~~~~~i~~a~~a-~~~G~d~v~~~pP~~~~--~~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 81 STAEAIELTKFA-EKAGADGALVVTPYYNK--PTQEGLYQHFKAIAEA 125 (292)
T ss_pred hHHHHHHHHHHH-HHcCCCEEEECCCcCCC--CCHHHHHHHHHHHHhc
Confidence 888888877653 335632 22222 4667777777666543
No 134
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=70.17 E-value=29 Score=32.32 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 014514 306 GAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 383 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~ 383 (423)
|......+..+++.+.+ ||+++++++.+ +||-. .. + +.+.++++... ..++||++.+.|.....
T Consensus 15 ~~~~~~~l~~~l~~a~~----d~~i~~ivl~~~s~Gg~~--~~-~---~~i~~~i~~~~----~~~kpvia~v~g~~~s~ 80 (208)
T cd07023 15 GGIGADSLIEQLRKARE----DDSVKAVVLRINSPGGSV--VA-S---EEIYREIRRLR----KAKKPVVASMGDVAASG 80 (208)
T ss_pred CCCCHHHHHHHHHHHHh----CCCCcEEEEEEECCCCCH--HH-H---HHHHHHHHHHH----hcCCcEEEEECCcchhH
Confidence 45667778888887776 99999998877 34421 11 1 34444554443 23689999988865444
Q ss_pred HH
Q 014514 384 GL 385 (423)
Q Consensus 384 a~ 385 (423)
+-
T Consensus 81 g~ 82 (208)
T cd07023 81 GY 82 (208)
T ss_pred HH
Confidence 43
No 135
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.20 E-value=80 Score=27.73 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=57.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
.-+|+|-+-+++++-++. . ..+.+.|.+..-.+ ...+. ++.+++.+++.+. ..+ .+-.||.
T Consensus 31 eVi~LG~~v~~e~~v~aa---~-----~~~adiVglS~l~~--~~~~~---~~~~~~~l~~~gl----~~~--~vivGG~ 91 (134)
T TIGR01501 31 NVVNLGVLSPQEEFIKAA---I-----ETKADAILVSSLYG--HGEID---CKGLRQKCDEAGL----EGI--LLYVGGN 91 (134)
T ss_pred EEEECCCCCCHHHHHHHH---H-----HcCCCEEEEecccc--cCHHH---HHHHHHHHHHCCC----CCC--EEEecCC
Confidence 449999999999888775 2 23555555544222 22222 2677888877642 232 2446773
Q ss_pred ----CHHH--HHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 380 ----NYQT--GLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 380 ----~~~~--a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
..+. -++.|++ +|+. -+|++.+++++.+....+
T Consensus 92 ~vi~~~d~~~~~~~l~~----~Gv~-~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKE----MGFD-RVFAPGTPPEVVIADLKK 130 (134)
T ss_pred cCcChhhhHHHHHHHHH----cCCC-EEECcCCCHHHHHHHHHH
Confidence 1221 1446777 8974 578888999888876554
No 136
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.87 E-value=85 Score=27.94 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=66.2
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
+..|.--+++.+.++. + +.++++|.+-...|- -.+.. ..+++++++.+. -.|.+-.||.-.
T Consensus 44 i~~g~~~tp~e~v~aA---~-----~~dv~vIgvSsl~g~--h~~l~---~~lve~lre~G~------~~i~v~~GGvip 104 (143)
T COG2185 44 INLGLFQTPEEAVRAA---V-----EEDVDVIGVSSLDGG--HLTLV---PGLVEALREAGV------EDILVVVGGVIP 104 (143)
T ss_pred EecCCcCCHHHHHHHH---H-----hcCCCEEEEEeccch--HHHHH---HHHHHHHHHhCC------cceEEeecCccC
Confidence 4455566666555443 4 356777776663221 23334 899999999862 336677899888
Q ss_pred HHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 382 QTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 382 ~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
.+-.+.|++ .|+. -+|++.+...+++...+....+
T Consensus 105 ~~d~~~l~~----~G~~-~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 105 PGDYQELKE----MGVD-RIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred chhHHHHHH----hCcc-eeeCCCCCHHHHHHHHHHHHHh
Confidence 888888988 8875 5688999999999888776543
No 137
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=68.34 E-value=60 Score=31.51 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=69.4
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCc-CCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGG-IANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~gg-i~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
|.|=.|..+.+.+.+-++.+++ ..+++++++-.+| ....+ ..+ -+.+++...+... .+.||++..+++
T Consensus 8 Pf~~dg~iD~~~~~~~i~~l~~-----~Gv~gi~~~GstGE~~~ls-~~E-r~~l~~~~~~~~~----~~~~vi~gv~~~ 76 (281)
T cd00408 8 PFTADGEVDLDALRRLVEFLIE-----AGVDGLVVLGTTGEAPTLT-DEE-RKEVIEAVVEAVA----GRVPVIAGVGAN 76 (281)
T ss_pred CcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECCCCcccccCC-HHH-HHHHHHHHHHHhC----CCCeEEEecCCc
Confidence 4555689999999999999985 6899999888433 22221 111 1445555544432 368999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++|. |.| + ..+.++.++.+-.++.+
T Consensus 77 ~~~~~i~~a~~a-~~~Gad~v~v~pP~y-~--~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 77 STREAIELARHA-EEAGADGVLVVPPYY-N--KPSQEGIVAHFKAVADA 121 (281)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEECCCcC-C--CCCHHHHHHHHHHHHhc
Confidence 888887777643 33453 333 2 25678888877776654
No 138
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=67.95 E-value=37 Score=29.91 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 309 NEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
+.+.+.++++.+-+ |+++++|++.+ +||-. .. . ..|.+++++. ++||++...|.-...+
T Consensus 12 ~~~~l~~~l~~a~~----d~~~~~ivl~~~s~Gg~~--~~-~---~~i~~~l~~~-------~kpvva~~~g~~~s~g 72 (161)
T cd00394 12 SADQLAAQIRFAEA----DNSVKAIVLEVNTPGGRV--DA-G---MNIVDALQAS-------RKPVIAYVGGQAASAG 72 (161)
T ss_pred hHHHHHHHHHHHHh----CCCCceEEEEEECCCcCH--HH-H---HHHHHHHHHh-------CCCEEEEECChhHHHH
Confidence 34445555555544 88999988876 55522 11 2 5667777664 5899999888655444
No 139
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=66.94 E-value=29 Score=32.45 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 308 PNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
.+.+.+.++++.+.+ |+++++|++.+ +||.. .. .+.+.+++++.+ .++||++.+.|.....+
T Consensus 13 ~s~~~l~~~l~~a~~----d~~i~~vvl~~~s~Gg~~--~~----~~~l~~~i~~~~-----~~kpvia~v~g~a~s~g 76 (207)
T TIGR00706 13 VSPEDFDKKIKRIKD----DKSIKALLLRINSPGGTV--VA----SEEIYEKLKKLK-----AKKPVVASMGGVAASGG 76 (207)
T ss_pred cCHHHHHHHHHHHhh----CCCccEEEEEecCCCCCH--HH----HHHHHHHHHHhc-----CCCCEEEEECCccchHH
Confidence 456778888888877 99999999877 34422 11 255666666653 25899999888654333
No 140
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.24 E-value=68 Score=31.24 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=69.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.|=-|..+.+.+.+-++.++ +..+++++++-..|-...-... --+.+++...+... .+.||++..+++
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~-----~~Gv~gl~v~GstGE~~~lt~~-Er~~l~~~~~~~~~----~~~~vi~gv~~~ 79 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQI-----ENGTDGLVVCGTTGESPTLSDE-EHEAVIEAVVEAVN----GRVPVIAGTGSN 79 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECCCCcchhhCCHH-HHHHHHHHHHHHhC----CCCcEEeccCCc
Confidence 4556678999999999999888 4789999998743222221111 12445555555432 368999999999
Q ss_pred CHHHHHHHHHhhccccCCc------eeecCCCCCHHHHHHHHHHHhH
Q 014514 380 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip------~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+.+++.+..+.+ +++|+. -+.|. .+.++.++.+-+++.
T Consensus 80 ~~~~~~~~a~~a-~~~G~d~v~~~~P~~~~--~~~~~l~~~~~~ia~ 123 (284)
T cd00950 80 NTAEAIELTKRA-EKAGADAALVVTPYYNK--PSQEGLYAHFKAIAE 123 (284)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEcccccCC--CCHHHHHHHHHHHHh
Confidence 999998887753 345643 12222 455666666655554
No 141
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=61.90 E-value=85 Score=30.98 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=65.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec-CcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~-ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-|.|=-|..+.+.+.+-++.++ +.++++++++-. |-....+. . --+.+++...+... .++||++..+.
T Consensus 15 TPf~~dg~iD~~~l~~li~~l~-----~~Gv~gi~v~GstGE~~~Lt~-e-Er~~v~~~~~~~~~----g~~pvi~gv~~ 83 (296)
T TIGR03249 15 TPFDADGSFDEAAYRENIEWLL-----GYGLEALFAAGGTGEFFSLTP-A-EYEQVVEIAVSTAK----GKVPVYTGVGG 83 (296)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-----hcCCCEEEECCCCcCcccCCH-H-HHHHHHHHHHHHhC----CCCcEEEecCc
Confidence 4566678899999999999888 478999998874 33322221 1 11445554444322 36899999875
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhH
Q 014514 379 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+.+++.+..+.+ +..|. |=|+|. .+.++.++.+-.++.
T Consensus 84 -~t~~ai~~a~~a-~~~Gadav~~~pP~y~~--~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 84 -NTSDAIEIARLA-EKAGADGYLLLPPYLIN--GEQEGLYAHVEAVCE 127 (296)
T ss_pred -cHHHHHHHHHHH-HHhCCCEEEECCCCCCC--CCHHHHHHHHHHHHh
Confidence 677887776643 33452 223232 456666776666654
No 142
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=60.40 E-value=99 Score=25.71 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhh
Q 014514 285 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESK 364 (423)
Q Consensus 285 ~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~ 364 (423)
..+.+... |-+ -+++|.+.+++.+.+++ .+ .+|+ .+.+ +...+.....+ ..+++.+++..
T Consensus 19 ~~~~l~~~--G~~---V~~lg~~~~~~~l~~~~---~~---~~pd--vV~i--S~~~~~~~~~~---~~~i~~l~~~~-- 78 (119)
T cd02067 19 VARALRDA--GFE---VIDLGVDVPPEEIVEAA---KE---EDAD--AIGL--SGLLTTHMTLM---KEVIEELKEAG-- 78 (119)
T ss_pred HHHHHHHC--CCE---EEECCCCCCHHHHHHHH---HH---cCCC--EEEE--eccccccHHHH---HHHHHHHHHcC--
Confidence 34555553 333 37889999988666654 32 1455 2333 22233334444 77888887753
Q ss_pred hhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHH
Q 014514 365 LKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 414 (423)
Q Consensus 365 ~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~ 414 (423)
. ..+.+.+||.....--+.+.+ .|+..++ .+-++++..
T Consensus 79 ---~-~~~~i~vGG~~~~~~~~~~~~----~G~D~~~----~~~~~~~~~ 116 (119)
T cd02067 79 ---L-DDIPVLVGGAIVTRDFKFLKE----IGVDAYF----GPATEAVEV 116 (119)
T ss_pred ---C-CCCeEEEECCCCChhHHHHHH----cCCeEEE----CCHHHHHHH
Confidence 1 125566777665554456776 8886553 355556554
No 143
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=60.35 E-value=2.8 Score=47.41 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=62.5
Q ss_pred CCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceee
Q 014514 26 DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTF 105 (423)
Q Consensus 26 ~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~v 105 (423)
+.+..++..+++. +||.++++++| |||++.+-...||- |-.++.+.+|..+.+..-+. .-.++
T Consensus 510 ~e~ia~s~a~~si--e~al~aae~l~-ypvivRaayalggl----gSgfa~n~eeL~~l~~~a~a----------~s~Qi 572 (1435)
T KOG0370|consen 510 NEKIAPSEAVSTI--EEALEAAERLG-YPVIVRAAYALGGL----GSGFANNEEELQDLAAQALA----------LSPQI 572 (1435)
T ss_pred cccccchhhHhHH--HHHHHHHHhcC-cHHHHHHHHHhcCc----cccccccHHHHHHHHhhccc----------cCcee
Confidence 3566677777776 89999999997 99998876654443 44566788887766554433 22578
Q ss_pred EEeeecCCCceEEEEEEEcCCCceEE
Q 014514 106 IVEPFVPHNQEYYLSIVSDRLGCTIS 131 (423)
Q Consensus 106 LVe~~v~~~~Elylgi~~D~~gp~il 131 (423)
|||+-+..=+|.-.-+.+|..+-.|.
T Consensus 573 lvekSlkGwkevEyevvrDa~~nciT 598 (1435)
T KOG0370|consen 573 LVEKSLKGWKEVEYEVVRDAYDNCIT 598 (1435)
T ss_pred eehhhhccccceEEEEEeccccchhh
Confidence 99999987667767778887643443
No 144
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=60.00 E-value=88 Score=30.56 Aligned_cols=109 Identities=10% Similarity=0.093 Sum_probs=69.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+-.|..+.+.+.+-++.+++ .++++++++-.+|=..+-...+ -+-+++...+... .++||++..++.
T Consensus 11 TPf~~dg~id~~~~~~~i~~l~~-----~Gv~gl~~~GstGE~~~Lt~~E-r~~l~~~~~~~~~----~~~~vi~gv~~~ 80 (289)
T PF00701_consen 11 TPFNADGSIDEDALKRLIDFLIE-----AGVDGLVVLGSTGEFYSLTDEE-RKELLEIVVEAAA----GRVPVIAGVGAN 80 (289)
T ss_dssp --BETTSSB-HHHHHHHHHHHHH-----TTSSEEEESSTTTTGGGS-HHH-HHHHHHHHHHHHT----TSSEEEEEEESS
T ss_pred CCCCCCcCcCHHHHHHHHHHHHH-----cCCCEEEECCCCcccccCCHHH-HHHHHHHHHHHcc----CceEEEecCcch
Confidence 35666788999999999999985 5899999877433222211111 1445555544432 368999999999
Q ss_pred CHHHHHHHHHhhccccCCceee-----cCCCCCHHHHHHHHHHHhH
Q 014514 380 NYQTGLAKMRALGEELGIPLEV-----YGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip~~~-----~~~~~~~~~av~~~~~~~~ 420 (423)
+.+++.+..+.+ +.+|+.... | ...|.++.++.+-.++.
T Consensus 81 st~~~i~~a~~a-~~~Gad~v~v~~P~~-~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 81 STEEAIELARHA-QDAGADAVLVIPPYY-FKPSQEELIDYFRAIAD 124 (289)
T ss_dssp SHHHHHHHHHHH-HHTT-SEEEEEESTS-SSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-hhcCceEEEEecccc-ccchhhHHHHHHHHHHh
Confidence 999998888764 345643221 1 23678888888877764
No 145
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=59.84 E-value=73 Score=29.84 Aligned_cols=65 Identities=26% Similarity=0.276 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~ 382 (423)
.+......+.++++.+.+ ||++++|++.+ +||- ... . +.+.++++..+ . ++||++.+.|.-..
T Consensus 22 ~~~~~~~~l~~~l~~a~~----d~~i~~Vvl~~~s~gg~--~~~-~---~~l~~~l~~~~----~-~KpViA~v~g~a~s 86 (214)
T cd07022 22 SGLTSYEGIAAAIRAALA----DPDVRAIVLDIDSPGGE--VAG-V---FELADAIRAAR----A-GKPIVAFVNGLAAS 86 (214)
T ss_pred CCcccHHHHHHHHHHHhh----CCCCcEEEEEEeCCCCc--HHH-H---HHHHHHHHHHh----c-CCCEEEEECCchhh
Confidence 445567788888888877 99999999977 3432 111 1 44556665543 2 58999998885444
Q ss_pred HH
Q 014514 383 TG 384 (423)
Q Consensus 383 ~a 384 (423)
.+
T Consensus 87 ~g 88 (214)
T cd07022 87 AA 88 (214)
T ss_pred HH
Confidence 33
No 146
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=59.78 E-value=1e+02 Score=30.31 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=68.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCC-CCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADP-DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~-~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-|.|=-|..+.+.+.+-++.+++ . .+++++++-.+|=...-...+ -+.++++..+... .++||++..+.
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~-----~~Gv~gi~~~GstGE~~~Lt~~E-r~~~~~~~~~~~~----~~~~viagv~~ 79 (288)
T cd00954 10 TPFDENGEINEDVLRAIVDYLIE-----KQGVDGLYVNGSTGEGFLLSVEE-RKQIAEIVAEAAK----GKVTLIAHVGS 79 (288)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh-----cCCCCEEEECcCCcCcccCCHHH-HHHHHHHHHHHhC----CCCeEEeccCC
Confidence 45666688999999999999984 6 889998888433222222221 1334444444322 26899999998
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++.+++.+..+.+ ++.|. |=|.|. .|.++.++.+-..+.+
T Consensus 80 ~~~~~ai~~a~~a-~~~Gad~v~~~~P~y~~--~~~~~i~~~~~~v~~a 125 (288)
T cd00954 80 LNLKESQELAKHA-EELGYDAISAITPFYYK--FSFEEIKDYYREIIAA 125 (288)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEeCCCCCC--CCHHHHHHHHHHHHHh
Confidence 8888887766543 33553 223232 5667777777776654
No 147
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=59.67 E-value=81 Score=32.99 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=70.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCC-ce----eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELG-NY----AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 343 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~a-N~----lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~ 343 (423)
.-+||+||.-.|.++ -|.+..... -.|. ++ .=+=|+-.+..+.+|++.+-. ...|.|+|.=+|| +
T Consensus 135 p~~I~viTs~~gAa~--~D~~~~~~~-r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~-----~~~Dviii~RGGG--S 204 (438)
T PRK00286 135 PKRIGVITSPTGAAI--RDILTVLRR-RFPLVEVIIYPTLVQGEGAAASIVAAIERANA-----RGEDVLIVARGGG--S 204 (438)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHh-cCCCCeEEEecCcCcCccHHHHHHHHHHHhcC-----CCCCEEEEecCCC--C
Confidence 678999999998774 577765311 1232 32 223456567778888877643 2356444333555 3
Q ss_pred hhHHhh-hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 344 FTDVAT-TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 344 ~~~va~-~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
.+|.++ .=+.+++|+.+. +.||++-+|-.....=-..-. .. ...||++|++.++.-
T Consensus 205 ~eDL~~Fn~e~v~~ai~~~-------~~Pvis~IGHE~D~tl~D~vA------d~------ra~TPtaaae~~~~~ 261 (438)
T PRK00286 205 LEDLWAFNDEAVARAIAAS-------RIPVISAVGHETDFTIADFVA------DL------RAPTPTAAAELAVPD 261 (438)
T ss_pred HHHhhccCcHHHHHHHHcC-------CCCEEEeccCCCCccHHHHhh------hc------cCCChHHHHHHhCcc
Confidence 344442 114555555443 799999999865332112222 22 237999999887643
No 148
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.37 E-value=1.1e+02 Score=29.96 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=63.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec-CcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~-ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-|.|=-|..+.+.+.+-++.++ +.++++++++-. |-....+ ..+ -..+++...+... .++||++..+.
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~-----~~Gv~gi~v~GstGE~~~Ls-~eE-r~~l~~~~~~~~~----~~~pvi~gv~~ 78 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLL-----SYGAAALFAAGGTGEFFSLT-PDE-YAQVVRAAVEETA----GRVPVLAGAGY 78 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECcCCcCcccCC-HHH-HHHHHHHHHHHhC----CCCCEEEecCC
Confidence 3455567899999999998888 478999998874 2222211 111 1334444333321 26899998876
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhH
Q 014514 379 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+..++.+..+.+ +++|. |-|.+ ..+.++.++.+-.++.
T Consensus 79 -~t~~~i~~a~~a-~~~Gad~v~~~pP~y~--~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 79 -GTATAIAYAQAA-EKAGADGILLLPPYLT--EAPQEGLYAHVEAVCK 122 (289)
T ss_pred -CHHHHHHHHHHH-HHhCCCEEEECCCCCC--CCCHHHHHHHHHHHHh
Confidence 777777766543 33453 22222 2456666666666654
No 149
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=57.19 E-value=44 Score=30.66 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=39.4
Q ss_pred eccCCCCHH---HHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 014514 303 EYSGAPNEE---EVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 377 (423)
Q Consensus 303 DlgG~a~~~---~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~ 377 (423)
.+-|..++. .+.++++...+ ++ .+.+++.+ |||..... +.|.+.++.. ++|+++.+.
T Consensus 5 ~i~g~I~~~~~~~l~~~l~~a~~----~~-~~~ivl~inspGG~v~~~------~~I~~~l~~~-------~~pvva~V~ 66 (178)
T cd07021 5 PIEGEIDPGLAAFVERALKEAKE----EG-ADAVVLDIDTPGGRVDSA------LEIVDLILNS-------PIPTIAYVN 66 (178)
T ss_pred EEeeEECHHHHHHHHHHHHHHHh----CC-CCeEEEEEECcCCCHHHH------HHHHHHHHhC-------CCCEEEEEC
Confidence 344444443 34555554443 54 66766666 78876432 6677777664 689999998
Q ss_pred CCCHHHH
Q 014514 378 GPNYQTG 384 (423)
Q Consensus 378 G~~~~~a 384 (423)
|.-.-.|
T Consensus 67 g~AaSaG 73 (178)
T cd07021 67 DRAASAG 73 (178)
T ss_pred CchHHHH
Confidence 8655444
No 150
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.48 E-value=76 Score=33.44 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHhc
Q 014514 353 GIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 422 (423)
Q Consensus 353 ~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~~ 422 (423)
-+...+++.+ .+|.+|...-.+ -.|-+-|+.++++.|+|+|-.+...+|-+.++.+++.++..
T Consensus 119 KLA~~lkk~~------~kvllVaaD~~R-pAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~ 181 (451)
T COG0541 119 KLAKYLKKKG------KKVLLVAADTYR-PAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEE 181 (451)
T ss_pred HHHHHHHHcC------CceEEEecccCC-hHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHc
Confidence 4666676642 456555543333 45666677777789999987766788999999999998763
No 151
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.31 E-value=1.6e+02 Score=29.47 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=55.3
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec--Cc---------------------------------CCchhH
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GG---------------------------------IANFTD 346 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~--gg---------------------------------i~~~~~ 346 (423)
..+..+.+.+.+.+.++-+-+ ||++++++|-.| .+ +.+|
T Consensus 68 ~~l~~~~t~~~l~~~I~~lN~----D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~Pc-- 141 (301)
T PRK14194 68 HRLPADTSQARLLALIAELNA----DPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTPC-- 141 (301)
T ss_pred EECCCCCCHHHHHHHHHHHcC----CCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCCC--
Confidence 455566666666665555544 666666666553 22 3344
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCC-CCHHHHHHH
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPE-ATMTGICKQ 414 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~-~~~~~av~~ 414 (423)
|..|+++.++.++-.+ .++.|++- ++|.--..=-..|.+ .|..+.++... .++.++++.
T Consensus 142 ---Tp~aii~lL~~~~i~l--~Gk~V~vIG~s~ivG~PmA~~L~~----~gatVtv~~~~t~~l~e~~~~ 202 (301)
T PRK14194 142 ---TPSGCLRLLEDTCGDL--TGKHAVVIGRSNIVGKPMAALLLQ----AHCSVTVVHSRSTDAKALCRQ 202 (301)
T ss_pred ---cHHHHHHHHHHhCCCC--CCCEEEEECCCCccHHHHHHHHHH----CCCEEEEECCCCCCHHHHHhc
Confidence 3489999998875332 23444444 555433333334444 78888888433 456665543
No 152
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.19 E-value=1.5e+02 Score=29.59 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=54.3
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec--CcC---------------------------------CchhH
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGI---------------------------------ANFTD 346 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~--ggi---------------------------------~~~~~ 346 (423)
..+..+.+.+.+.+.++-+-+ |++++++++-.| .++ .+|
T Consensus 67 ~~l~~~~~~~el~~~i~~lN~----d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~Pc-- 140 (296)
T PRK14188 67 HKLPADTSQAELLALIARLNA----DPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATGETALVPC-- 140 (296)
T ss_pred EECCCCCCHHHHHHHHHHHhC----CCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCCCCCCcCC--
Confidence 455566666666666555544 666666666653 333 333
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecC-CCCCHHHHHH
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYG-PEATMTGICK 413 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~-~~~~~~~av~ 413 (423)
|..||++.++.++-.+ .++.|++. ..+..-..--..|.+ .|.++.++. ...++.++++
T Consensus 141 ---Tp~ai~~ll~~~~i~~--~Gk~V~viGrs~~mG~PmA~~L~~----~g~tVtv~~~rT~~l~e~~~ 200 (296)
T PRK14188 141 ---TPLGCMMLLRRVHGDL--SGLNAVVIGRSNLVGKPMAQLLLA----ANATVTIAHSRTRDLPAVCR 200 (296)
T ss_pred ---CHHHHHHHHHHhCCCC--CCCEEEEEcCCcchHHHHHHHHHh----CCCEEEEECCCCCCHHHHHh
Confidence 3489999988875322 23445444 344333333334444 789998884 3335555554
No 153
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=52.26 E-value=1.8e+02 Score=26.30 Aligned_cols=112 Identities=11% Similarity=0.098 Sum_probs=71.6
Q ss_pred HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec---CcCCchhHHhhhHHHHHHHHHHh
Q 014514 285 YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG---GGIANFTDVATTFNGIIRALREK 361 (423)
Q Consensus 285 ~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~---ggi~~~~~va~~~~~ii~a~~~~ 361 (423)
+.|.+..+ |.+..|. |+--=|-+-.+--+++.+++ ..+.++++..-+ |....++-|+ +.+.+.+.+.
T Consensus 32 A~~~l~~~--G~~~~~i-~v~~VPGA~EiP~~a~~l~~----~~~yDaiIaLG~VIrGeT~H~e~V~---~~v~~gl~~v 101 (158)
T PRK12419 32 FVAEIAAR--GGAASQV-DIFDVPGAFEIPLHAQTLAK----TGRYAAIVAAALVVDGGIYRHEFVA---QAVIDGLMRV 101 (158)
T ss_pred HHHHHHHc--CCCccce-EEEECCcHHHHHHHHHHHHh----cCCCCEEEEEEEEEcCCCchhHHHH---HHHHHHHHHH
Confidence 56777775 5555554 45444445556666666665 566888877663 7777777777 7777766665
Q ss_pred hhhhhcccceEEEE-eCCCCHHHHHH--HHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 362 ESKLKAARMHIFVR-RGGPNYQTGLA--KMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 362 ~~~~~~~~~pvv~r-l~G~~~~~a~~--~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.- ..++||.-. +.-.+.++|.+ -+.. +|.- .-=.||+..+++++.
T Consensus 102 sl---~~~~PV~fGVLT~~~~eqA~~rqa~~R----a~~~-------nKG~eaA~aalem~~ 149 (158)
T PRK12419 102 QL---DTEVPVFSVVLTPHHFHESEEHHDFFR----AHFV-------VKGAEAAHACADTLL 149 (158)
T ss_pred Hh---ccCCCEEEEecCCCcHHHHHHHHHHhh----cCcc-------ccHHHHHHHHHHHHH
Confidence 43 257997777 77777675443 3322 4432 234788999988875
No 154
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=52.02 E-value=70 Score=36.90 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred HHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeecc-ccCccCCcCeeEEe--CCHHHHHHHHHHHh
Q 014514 13 RLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDM-LFGKRGKSGLVALN--LDLAQVAEFVKGRL 89 (423)
Q Consensus 13 ~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv-~~g~r~k~GGV~l~--~~~ee~~~a~~~~~ 89 (423)
++|... | |..|.+.-.++. +||.+.+..+| |||.+.|.. +. |-..+ .+.++.+...++-.
T Consensus 1039 ~~Ld~i-----~--v~Qp~Wkelt~~--~eA~~F~~~Vg-YP~lvRPSYVLS-------GaAMnv~~~~~dl~~~L~~A~ 1101 (1435)
T KOG0370|consen 1039 RMLDSI-----G--VDQPAWKELTSL--EEAKKFAEKVG-YPVLVRPSYVLS-------GAAMNVVYSESDLKSYLEQAS 1101 (1435)
T ss_pred HHHHHc-----C--CCchhhhhhccH--HHHHHHHHhcC-CceEecccceec-------chhhhhhhcHHHHHHHHHHHh
Confidence 567776 7 455577777766 99999999997 999999875 43 33333 45555554433321
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEE
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYL 119 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elyl 119 (423)
. . .+ -+-|.+.+++...+|+=+
T Consensus 1102 ~--v---s~---dhPVVisKfie~AkEidv 1123 (1435)
T KOG0370|consen 1102 A--V---SP---DHPVVISKFIEGAKEIDV 1123 (1435)
T ss_pred h--c---CC---CCCEEhHHhhcccceech
Confidence 1 1 11 234788899988889766
No 155
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=51.07 E-value=83 Score=30.14 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=58.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
+-+|||-|.+.+.|-++.+-. +|+ +| ..++... +.+. .++-|++.|++.+ .+-|+.|-.||.
T Consensus 134 evidLG~dvP~e~fve~a~e~------k~d----~v-~~SalMT-ttm~-~~~~viE~L~eeG-----iRd~v~v~vGGA 195 (227)
T COG5012 134 EVIDLGRDVPVEEFVEKAKEL------KPD----LV-SMSALMT-TTMI-GMKDVIELLKEEG-----IRDKVIVMVGGA 195 (227)
T ss_pred EEEecCCCCCHHHHHHHHHHc------CCc----EE-echHHHH-HHHH-HHHHHHHHHHHcC-----CccCeEEeecCc
Confidence 569999999999998876443 333 22 2233322 2222 3678888888875 456788878997
Q ss_pred CHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 014514 380 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 419 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~ 419 (423)
...+. +-. +.|-..| ..+.++||..+-.+.
T Consensus 196 pvtq~--~a~----~iGAD~~----~~dAs~Av~~ak~~l 225 (227)
T COG5012 196 PVTQD--WAD----KIGADAY----AEDASDAVKKAKAIL 225 (227)
T ss_pred cccHH--HHH----HhCCCcc----CcCHHHHHHHHHHHh
Confidence 43322 122 3566665 478888888876654
No 156
>PRK11778 putative inner membrane peptidase; Provisional
Probab=49.04 E-value=35 Score=34.60 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=26.0
Q ss_pred CEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 331 RKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 331 ~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
++|++.+ |||.+...+.+ ...++.+++ .++||++.+++.-+
T Consensus 124 ~aVvLridSpGG~v~~s~~a---~~~l~~lr~-------~~kpVva~v~~~AA 166 (330)
T PRK11778 124 DEVLLRLESPGGVVHGYGLA---ASQLQRLRD-------AGIPLTVAVDKVAA 166 (330)
T ss_pred CeEEEEEeCCCCchhHHHHH---HHHHHHHHh-------cCCCEEEEECCchh
Confidence 5777766 88877665555 222333443 36899999888543
No 157
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=48.00 E-value=1.1e+02 Score=28.74 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=39.3
Q ss_pred EEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCC
Q 014514 333 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEAT 407 (423)
Q Consensus 333 vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~ 407 (423)
+.|.+.|.-+| +++|+++++... .+.-|.+.+.......+++.-++ +|||++++...+-
T Consensus 3 i~VlaSG~GSN-------lqaiida~~~~~-----~~a~i~~Visd~~~A~~lerA~~----~gIpt~~~~~k~~ 61 (200)
T COG0299 3 IAVLASGNGSN-------LQAIIDAIKGGK-----LDAEIVAVISDKADAYALERAAK----AGIPTVVLDRKEF 61 (200)
T ss_pred EEEEEeCCccc-------HHHHHHHHhcCC-----CCcEEEEEEeCCCCCHHHHHHHH----cCCCEEEeccccC
Confidence 44555555454 388899887431 23446666777666778888887 9999988765544
No 158
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=44.38 E-value=31 Score=31.59 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=32.9
Q ss_pred ceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEe-CCHHHHHHHHHHHhccchhccCCCCCceeeEEee
Q 014514 31 SAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN-LDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEP 109 (423)
Q Consensus 31 ~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~-~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~ 109 (423)
++.++++. ++..+..+.-+ -+|+||-.-.||+ ||..- .+........+.+.. ..-..+++|+
T Consensus 14 ~T~vs~~~--~~i~~f~~~~~--~~VlKPl~g~gG~----gV~~i~~~~~n~~~i~e~~~~---------~~~~~~mvQ~ 76 (173)
T PF02955_consen 14 PTLVSRDK--EEIRAFIEEHG--DIVLKPLDGMGGR----GVFRISRDDPNLNSILETLTK---------NGERPVMVQP 76 (173)
T ss_dssp -EEEES-H--HHHHHHHHHHS--SEEEEESS--TTT----T-EEE-TT-TTHHHHHHHHTT---------TTTS-EEEEE
T ss_pred CEEEECCH--HHHHHHHHHCC--CEEEEECCCCCCc----CEEEEcCCCCCHHHHHHHHHh---------cCCccEEEEe
Confidence 67676654 67776666655 3999999987777 55444 442222222222221 1124689999
Q ss_pred ecC
Q 014514 110 FVP 112 (423)
Q Consensus 110 ~v~ 112 (423)
+++
T Consensus 77 flp 79 (173)
T PF02955_consen 77 FLP 79 (173)
T ss_dssp --G
T ss_pred ccc
Confidence 998
No 159
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=44.25 E-value=1.4e+02 Score=26.53 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=68.4
Q ss_pred HHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe---cCcCCchhHHhhhHHHHHHHHH
Q 014514 285 YADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---GGGIANFTDVATTFNGIIRALR 359 (423)
Q Consensus 285 ~~D~l~~~g~gg~~aN~--lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~---~ggi~~~~~va~~~~~ii~a~~ 359 (423)
+.+.+..+ |.++.|. ....|.- .+--+++.+++ ..+.|+++..- -|....++-|+ +.+.+.+-
T Consensus 25 a~~~l~~~--g~~~~~i~~~~VPGa~---ElP~a~~~l~~----~~~~Davi~lG~VI~G~T~H~~~v~---~~v~~gl~ 92 (144)
T PF00885_consen 25 ALEELKRH--GVAEENIEVIRVPGAF---ELPLAAKRLAE----SGRYDAVIALGCVIRGETDHFEYVA---NAVSRGLM 92 (144)
T ss_dssp HHHHHHHT--TTTGGCEEEEEESSGG---GHHHHHHHHHH----CSTESEEEEEEEEE--SSTHHHHHH---HHHHHHHH
T ss_pred HHHHHHHc--CCCccceEEEEcCCHH---HHHHHHHHHhc----ccCccEEEEeccccCCCchHHHHHH---HHHHHHHH
Confidence 56777764 4444443 3333433 46677777877 67788888776 37777766666 67766666
Q ss_pred HhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 360 EKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 360 ~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+..- ..++||..- +.-.+.+++++... .-.. .-=.||+..++++++
T Consensus 93 ~lsl---~~~~PV~~gvlt~~~~eqa~~R~~-------~~~~-----nkG~eaA~aal~m~~ 139 (144)
T PF00885_consen 93 DLSL---EYGIPVIFGVLTPDTEEQALERAG-------GKAG-----NKGREAAEAALEMAK 139 (144)
T ss_dssp HHHH---HHTSEEEEEEEEESSHHHHHHHCE-------ETTE-----EHHHHHHHHHHHHHH
T ss_pred HHhc---cCCccEEEEecCCCCHHHHHHHhc-------chhh-----hhHHHHHHHHHHHHH
Confidence 5532 247997766 77788887766543 2122 234888999998875
No 160
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=43.19 E-value=1e+02 Score=28.27 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC---CCCHHHH
Q 014514 310 EEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG---GPNYQTG 384 (423)
Q Consensus 310 ~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~---G~~~~~a 384 (423)
.+.+.++++.+-+ + +++.|++.+ |||-... + ..+.++++.. ++|+++.+. |.-.-.|
T Consensus 15 ~~~l~~~l~~a~~----~-~~~~vvl~InSpGG~v~~---~---~~i~~~l~~~-------~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 15 ADYLERAIDQAEE----G-GADALIIELDTPGGLLDS---T---REIVQAILAS-------PVPVVVYVYPSGARAASAG 76 (187)
T ss_pred HHHHHHHHHHHHh----C-CCCEEEEEEECCCCCHHH---H---HHHHHHHHhC-------CCCEEEEEecCCCCchhHH
Confidence 3455555555543 4 477766654 7885432 2 4555666443 689999875 7665555
Q ss_pred HHHH
Q 014514 385 LAKM 388 (423)
Q Consensus 385 ~~~l 388 (423)
--+.
T Consensus 77 ~~ia 80 (187)
T cd07020 77 TYIL 80 (187)
T ss_pred HHHH
Confidence 4444
No 161
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=42.80 E-value=2.4e+02 Score=27.02 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=23.9
Q ss_pred HHHHHHHhhcccc-CCceeecCCCCCHHHHHHHHH
Q 014514 383 TGLAKMRALGEEL-GIPLEVYGPEATMTGICKQAI 416 (423)
Q Consensus 383 ~a~~~l~~~~~~~-gip~~~~~~~~~~~~av~~~~ 416 (423)
..++.++++.+.. .+|+.--|...|.++|.++..
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK 211 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH
Confidence 4566666666665 488887777788888877763
No 162
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.28 E-value=88 Score=32.31 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=49.1
Q ss_pred CcEEEEEcCccHHHH-HHHHHhccCCCCC-----C-------------C--ceee-----ccCCCCHHHHHHHHHHHHhh
Q 014514 270 GRIWTMVAGGGASVI-YADTVGDLGYASE-----L-------------G--NYAE-----YSGAPNEEEVLQYARVVIDC 323 (423)
Q Consensus 270 g~I~ii~NG~G~~~~-~~D~l~~~g~gg~-----~-------------a--N~lD-----lgG~a~~~~~~~a~~~ll~~ 323 (423)
.+=-++|||+--++. ++.++..- |.+ | + .++. -+-.++.+.+.+++
T Consensus 89 ~~eiivt~Ga~~al~~~~~a~~~p--GDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i------ 160 (393)
T COG0436 89 EEEIIVTAGAKEALFLAFLALLNP--GDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAI------ 160 (393)
T ss_pred CCeEEEeCCHHHHHHHHHHHhcCC--CCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhc------
Confidence 343567888887776 66777663 322 2 1 2233 25667777777764
Q ss_pred hccCCCCCEEEEEe---cCcCCchhHHhhhHHHHHHHHHHh
Q 014514 324 ATADPDGRKRALLI---GGGIANFTDVATTFNGIIRALREK 361 (423)
Q Consensus 324 ~~~~~~~~~vlv~~---~ggi~~~~~va~~~~~ii~a~~~~ 361 (423)
.+++|++++|. |+|.+=+.+-. +.|++..+++
T Consensus 161 ---~~ktk~i~ln~P~NPTGav~~~~~l---~~i~~~a~~~ 195 (393)
T COG0436 161 ---TPKTKAIILNSPNNPTGAVYSKEEL---KAIVELAREH 195 (393)
T ss_pred ---CccceEEEEeCCCCCcCcCCCHHHH---HHHHHHHHHc
Confidence 46899999998 45544444434 7888887765
No 163
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=42.07 E-value=1.7e+02 Score=27.04 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=49.8
Q ss_pred EEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHH
Q 014514 333 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGIC 412 (423)
Q Consensus 333 vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av 412 (423)
+++.-++|.-..+.+| + +...++..+ .+..+++....+ ..|.+-|+.+++..|+|.+......++.+.+
T Consensus 4 i~lvGptGvGKTTt~a---K-LAa~~~~~~------~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~ 72 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIA---K-LAARLKLKG------KKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESDPAEIA 72 (196)
T ss_dssp EEEEESTTSSHHHHHH---H-HHHHHHHTT--------EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSCHHHHH
T ss_pred EEEECCCCCchHhHHH---H-HHHHHhhcc------ccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchhhHHHH
Confidence 4444488888877777 3 443343332 344555555544 5567777777778999998766667788888
Q ss_pred HHHHHHhH
Q 014514 413 KQAIDCIM 420 (423)
Q Consensus 413 ~~~~~~~~ 420 (423)
..+++...
T Consensus 73 ~~~l~~~~ 80 (196)
T PF00448_consen 73 REALEKFR 80 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777653
No 164
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=40.07 E-value=92 Score=27.49 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 014514 308 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 387 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~ 387 (423)
.+++++...++-+-+ ++.+ -+.||.|||-... + ..|.+.++.. ++|+++...|.-.-.|--+
T Consensus 15 ~~~~~~~~~l~~~~~----~~~i-~l~inspGG~~~~---~---~~i~~~i~~~-------~~pvi~~v~g~a~s~g~~i 76 (160)
T cd07016 15 VTAKEFKDALDALGD----DSDI-TVRINSPGGDVFA---G---LAIYNALKRH-------KGKVTVKIDGLAASAASVI 76 (160)
T ss_pred cCHHHHHHHHHhccC----CCCE-EEEEECCCCCHHH---H---HHHHHHHHhc-------CCCEEEEEcchHHhHHHHH
Confidence 566777777665532 4222 3555558886432 2 6677777664 5889999988765555444
Q ss_pred HH
Q 014514 388 MR 389 (423)
Q Consensus 388 l~ 389 (423)
+-
T Consensus 77 a~ 78 (160)
T cd07016 77 AM 78 (160)
T ss_pred Hh
Confidence 43
No 165
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.16 E-value=45 Score=29.68 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=32.0
Q ss_pred EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 372 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 372 vv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
++..+|=..=+-+-+++..++..+|+-+..-|-.+||+|++++|++.
T Consensus 16 lvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~ 62 (143)
T COG2185 16 LVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE 62 (143)
T ss_pred EEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc
Confidence 44445533333444454444445999998888889999999999764
No 166
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=38.81 E-value=1.9e+02 Score=25.96 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=48.9
Q ss_pred CCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhc----ccceEEEEeCCCCHHHHHHHHHhhccccCCceeec
Q 014514 327 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKA----ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVY 402 (423)
Q Consensus 327 ~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~----~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~ 402 (423)
||+.++.++++....++.+-+.+..++++-.++..-..+.+ .-.+|++.=||.+...=.+++.++ .|.|+++.
T Consensus 104 ~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Adv---l~~~V~~~ 180 (198)
T PF02782_consen 104 DPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADV---LGRPVVRP 180 (198)
T ss_dssp BTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHH---HTSEEEEE
T ss_pred ccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHH---hCCceEeC
Confidence 56677778777554444444444556665555544333311 123466666666666667888775 78999876
Q ss_pred CCCCCHHHHHHHHH
Q 014514 403 GPEATMTGICKQAI 416 (423)
Q Consensus 403 ~~~~~~~~av~~~~ 416 (423)
. ..-..|...|+
T Consensus 181 ~--~~e~~a~GaA~ 192 (198)
T PF02782_consen 181 E--VEEASALGAAL 192 (198)
T ss_dssp S--SSTHHHHHHHH
T ss_pred C--CCchHHHHHHH
Confidence 4 23234444444
No 167
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=35.55 E-value=98 Score=31.87 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCC--CCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHH
Q 014514 281 ASVIYADTVGDLGYA--SELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 358 (423)
Q Consensus 281 ~~~~~~D~l~~~g~g--g~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~ 358 (423)
..+++.|.|+..| | |++-.++-.-+..+++.|.+..+-|+. +.+|+.| ||..|+.+- +.|+..+
T Consensus 23 ~~~lAI~eINa~G-GvlG~~le~v~~Dp~Sd~~~ya~~A~~Li~----~d~V~~i----fGc~TSasR-----KaVlPvv 88 (363)
T PF13433_consen 23 GALLAIEEINAAG-GVLGRQLEPVIYDPASDPSTYAEKAEKLIR----EDGVRAI----FGCYTSASR-----KAVLPVV 88 (363)
T ss_dssp HHHHHHHHHHCTT-TBTTB--EEEEE--TT-HHHHHHHHHHHHH----HS---EE----EE--SHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHhcC-CcCCeEEEEEEECCCCCHHHHHHHHHHHHH----hCCccEE----EecchhhhH-----HHHHHHH
Confidence 3678899999974 3 467888888889999999999998876 6676533 477776554 6677766
Q ss_pred HHh
Q 014514 359 REK 361 (423)
Q Consensus 359 ~~~ 361 (423)
+++
T Consensus 89 E~~ 91 (363)
T PF13433_consen 89 ERH 91 (363)
T ss_dssp HHC
T ss_pred Hhc
Confidence 655
No 168
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=35.19 E-value=3.4e+02 Score=24.46 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=66.4
Q ss_pred HHHHHhccCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe---cCcCCchhHHhhhHHHHHHHHH
Q 014514 285 YADTVGDLGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---GGGIANFTDVATTFNGIIRALR 359 (423)
Q Consensus 285 ~~D~l~~~g~gg~~aN--~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~---~ggi~~~~~va~~~~~ii~a~~ 359 (423)
+.|.+..+ |+...| -++..|.-. +--+.+.+++ ..+.++++..- =|++..++-|+ +...+.+-
T Consensus 34 A~~~l~~~--G~~~~~i~vv~VPGa~E---iPl~a~~La~----~~~yDAvv~lG~VIrG~T~Hfd~Va---~~~~~gl~ 101 (152)
T COG0054 34 AVDALKRH--GADVDNIDVVRVPGAFE---IPLAAKKLAR----TGKYDAVVALGAVIRGETYHFDYVA---NEVARGLM 101 (152)
T ss_pred HHHHHHHc--CCCcccceEEEeCCcch---hHHHHHHHHh----cCCcceEEEEeeEEeCCCccHHHHH---HHHHHHHH
Confidence 55777774 666653 355666554 3345555655 55678777655 37877777776 44444443
Q ss_pred HhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 360 EKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 360 ~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..- ..++||..- ++-.+.+.+.+. +|+.-- .-=.+|+..|+++++.
T Consensus 102 ~vsl---~~~~PV~~GVLt~~~~eqA~~r-------ag~~~g-----nkG~~Aa~aAlem~~l 149 (152)
T COG0054 102 DVSL---ETGVPVTFGVLTTDNIEQAIER-------AGTKAG-----NKGAEAAEAALEMANL 149 (152)
T ss_pred HHHH---hhCCCeEeeecCCCcHHHHHHH-------hCcccc-----ccHHHHHHHHHHHHHH
Confidence 3322 247998888 554477766543 343321 2347899999998864
No 169
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=34.57 E-value=3.4e+02 Score=24.34 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=73.9
Q ss_pred HHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec---CcCCchhHHhhhHHHHHHHH
Q 014514 282 SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG---GGIANFTDVATTFNGIIRAL 358 (423)
Q Consensus 282 ~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~---ggi~~~~~va~~~~~ii~a~ 358 (423)
---+.+.+..+ |....|. |+---|-.-.+--+++.+++ ..+.++++..-+ |+...++-|+ +.+.+.+
T Consensus 31 ~~ga~~~l~~~--gv~~~~i-~v~~VPGa~EiP~a~~~l~~----~~~~DavIalG~VIrG~T~H~e~V~---~~v~~gl 100 (154)
T PRK00061 31 LEGALDALKRH--GVSEENI-DVVRVPGAFEIPLAAKKLAE----SGKYDAVIALGAVIRGETPHFDYVA---NEVAKGL 100 (154)
T ss_pred HHHHHHHHHHc--CCCccce-EEEECCCHHHHHHHHHHHHH----cCCCCEEEEEeeEEcCCCchHHHHH---HHHHHHH
Confidence 33356777774 5444444 33334555567777777776 566888777662 7777777777 7777776
Q ss_pred HHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 359 REKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 359 ~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
-+..- ..++||... +...|.+.++..-.. -.. .-=.||++.+++++..
T Consensus 101 ~~v~l---~~~~PV~~GVLt~~~~eQa~~R~~~-------~~~-----nkG~eaa~aal~m~~l 149 (154)
T PRK00061 101 ADVSL---ETGVPVGFGVLTTDTIEQAIERAGT-------KAG-----NKGAEAALAALEMANL 149 (154)
T ss_pred HHHHh---ccCCCEEEEecCCCCHHHHHHHhCc-------ccc-----ccHHHHHHHHHHHHHH
Confidence 66542 257997777 888888888665531 111 2347888999888753
No 170
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=33.43 E-value=1.3e+02 Score=27.02 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 308 PNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
.+.+.+...+..+-. +++.+.+.+.+ |||-.. -+ ..|.++++.. +.||++...|.-+-.|
T Consensus 12 ~~~~~~~~~L~~l~~----~~~~~~i~l~InSpGG~v~---~~---~~i~~~i~~~-------~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 12 ISANQFAAQLLFLGA----VNPEKDIYLYINSPGGDVF---AG---MAIYDTIKFI-------KADVVTIIDGLAASMG 73 (162)
T ss_pred HHHHHHHHHHHHHhc----CCCCCCEEEEEECCCCcHH---HH---HHHHHHHHhc-------CCCceEEEEeehhhHH
Confidence 334445555544433 55666655555 888542 22 6788888775 4567777666544444
No 171
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=33.02 E-value=2.5e+02 Score=28.50 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=62.0
Q ss_pred CCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE
Q 014514 297 ELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR 375 (423)
Q Consensus 297 ~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r 375 (423)
...+-..+-|..-+|-+..++.+.-+ .||+ +.|++. ++ +.....=...|-.+|+-|++.+-+.......-=.+
T Consensus 157 ~~R~s~w~~~~~gpd~I~~aF~~Are---adP~--AkL~~NDY~-ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~ 230 (345)
T COG3693 157 SLRRSAWYDGGTGPDYIKLAFHIARE---ADPD--AKLVINDYS-IEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFS 230 (345)
T ss_pred hhhhhhhhccCCccHHHHHHHHHHHh---hCCC--ceEEeeccc-ccCChHHHHHHHHHHHHHHHCCCCccceeeeeeec
Confidence 34444556666777888888887754 2666 445554 75 55444333345566666666543222222333356
Q ss_pred eCCCCHHHHHHHHHhhccccCCceeecC
Q 014514 376 RGGPNYQTGLAKMRALGEELGIPLEVYG 403 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~gip~~~~~ 403 (423)
++++..+..+.-|.+..+. |+|++|..
T Consensus 231 ~~~~~~~~~~~a~~~~~k~-Gl~i~VTE 257 (345)
T COG3693 231 GDGPSIEKMRAALLKFSKL-GLPIYVTE 257 (345)
T ss_pred CCCCCHHHHHHHHHHHhhc-CCCceEEE
Confidence 8889999998888776555 99999753
No 172
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=32.47 E-value=4.2e+02 Score=25.82 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHh
Q 014514 308 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA 348 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va 348 (423)
-.++...+.....++ +.+-+.++++.|.+-++.-.-|
T Consensus 43 m~pe~~~~~~~~~~~----~~~pDf~i~isPN~a~PGP~~A 79 (277)
T PRK00994 43 MGPEEVEEVVKKMLE----EWKPDFVIVISPNPAAPGPKKA 79 (277)
T ss_pred CCHHHHHHHHHHHHH----hhCCCEEEEECCCCCCCCchHH
Confidence 345555555554444 4444445555555555444333
No 173
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=32.18 E-value=1e+02 Score=31.04 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=35.9
Q ss_pred CCcCCceEEeeCCCHHhHHhh--ccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCce
Q 014514 26 DLQICSAQVTESTDFSELTNK--EPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPIT 103 (423)
Q Consensus 26 ~ipv~~~~~~~~~~~~ea~~a--a~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~ 103 (423)
.+.+|+..+..+. .++..+. ...+. +|++.||++.+ |..++--..+.-+.+...+ ++ . +
T Consensus 112 ~i~~P~~v~i~~~-~~~~~~~l~~agL~-fPlI~KPlvA~-Gsa~SH~Maivf~~~gL~~---------L~--~---P-- 172 (307)
T PF05770_consen 112 RIRVPKFVVINSD-AESLPELLKEAGLK-FPLICKPLVAC-GSADSHKMAIVFNEEGLKD---------LK--P---P-- 172 (307)
T ss_dssp TEE-S-EEEESSS-HCCHHHHHHCTTS--SSEEEEESB-S-STSCCCEEEEE-SGGGGTT-------------S---S--
T ss_pred cccCCceEEEcCC-HHHHHHHHHHCCCc-ccEEeeehhhc-CCccceEEEEEECHHHHhh---------cC--C---C--
Confidence 3555677776632 2223222 23564 99999999976 4556666666655554331 11 1 2
Q ss_pred eeEEeeecCCCceE
Q 014514 104 TFIVEPFVPHNQEY 117 (423)
Q Consensus 104 ~vLVe~~v~~~~El 117 (423)
+++|++++|+-=+
T Consensus 173 -~VlQeFVNHggvL 185 (307)
T PF05770_consen 173 -CVLQEFVNHGGVL 185 (307)
T ss_dssp -EEEEE----TTEE
T ss_pred -EEEEEeecCCCEE
Confidence 5899999997533
No 174
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=31.61 E-value=2.2e+02 Score=30.24 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=36.1
Q ss_pred CcEEEeeccccCccCCcCeeEEe--CCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEE
Q 014514 53 SRLVVKPDMLFGKRGKSGLVALN--LDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYL 119 (423)
Q Consensus 53 ~pvVvK~qv~~g~r~k~GGV~l~--~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elyl 119 (423)
-.+|+||--..|++ ||.++ .++++=+++.++.+. +.+++|+++....|-+.
T Consensus 339 ~~lVLKP~D~Ygg~----GV~~G~e~~~eeW~~~l~~a~~------------~~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 339 DRLVLKPNDEYGGK----GVYIGWETSPEEWEAALEEAAR------------EPYILQEYVRPPREPMP 391 (445)
T ss_pred hcEEeccccccCCC----CeEECCcCCHHHHHHHHHHHhc------------CCcEEEEEecCCccccc
Confidence 46899998877777 99998 366665555555432 25899999987665555
No 175
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=31.50 E-value=66 Score=25.72 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCC
Q 014514 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST 38 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~ 38 (423)
.|++.|.++||++| +|.....+....+++
T Consensus 17 iLs~eE~~~lL~~y-----~i~~~qLP~I~~~DP 45 (79)
T PRK09570 17 ILSEEEAKKLLKEY-----GIKPEQLPKIKASDP 45 (79)
T ss_pred ECCHHHHHHHHHHc-----CCCHHHCCceeccCh
Confidence 48999999999999 876555555555554
No 176
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=31.39 E-value=1.2e+02 Score=30.94 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=52.8
Q ss_pred ceEEeeCCCHHhHHhhcccc-CCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEee
Q 014514 31 SAQVTESTDFSELTNKEPWL-SSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEP 109 (423)
Q Consensus 31 ~~~~~~~~~~~ea~~aa~~l-g~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~ 109 (423)
+++.+.+. ++|..++..+ ...||=+||-...||| |=.+..+.++...+...+-...+. -.|+.+|+
T Consensus 116 ~G~tvFs~--~DA~~A~~~LL~~G~VRlKp~~a~gG~----GQ~vv~~~~~Ld~~L~~~~~~~l~-------~~GlVLE~ 182 (355)
T PF11379_consen 116 PGYTVFSR--EDARRAARRLLRDGPVRLKPVHATGGR----GQQVVADADELDAALAALDDAELA-------RHGLVLEE 182 (355)
T ss_pred CCccccCH--HHHHHHHHHHhccCCeeeccCcccCCC----CceEecCHHHHHHHHHcCCHHHHH-------hCCEEEec
Confidence 44455555 7888887664 3469999998888888 445567888888777766554442 24677888
Q ss_pred ecCCCceEEEEEE
Q 014514 110 FVPHNQEYYLSIV 122 (423)
Q Consensus 110 ~v~~~~Elylgi~ 122 (423)
-+..-.=+.||-.
T Consensus 183 ~L~~~~T~SVGqv 195 (355)
T PF11379_consen 183 DLEEVVTYSVGQV 195 (355)
T ss_pred ccCCCceeeEEEE
Confidence 7765545555543
No 177
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.19 E-value=2.2e+02 Score=26.65 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 014514 308 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 387 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~ 387 (423)
.+.+..++.++-+|+ ++|++++++.. .+..| .++++++++.+. .+...++...| ..++.+.
T Consensus 167 ~~~~~~~~~~~~~l~---~~~~~~ai~~~-------~d~~a---~g~~~al~~~g~----~~~~~ivg~d~--~~~~~~~ 227 (274)
T cd06311 167 WNRDDAFSVMQDLLT---KFPKIDAVWAH-------DDDMA---VGVLAAIKQAGR----TDIKFVVGGAG--SKDMIKM 227 (274)
T ss_pred CcHHHHHHHHHHHHH---hCCCcCEEEEC-------CCcHH---HHHHHHHHHcCC----CCCceEEEeCC--CHHHHHH
Confidence 344444444444443 36778876542 24566 899999998753 12223333344 3566777
Q ss_pred HHh
Q 014514 388 MRA 390 (423)
Q Consensus 388 l~~ 390 (423)
+++
T Consensus 228 i~~ 230 (274)
T cd06311 228 IMD 230 (274)
T ss_pred HHC
Confidence 874
No 178
>PRK10949 protease 4; Provisional
Probab=31.07 E-value=99 Score=34.15 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhccCCCCCEEEEEe--cCc--CCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE
Q 014514 311 EEVLQYARVVIDCATADPDGRKRALLI--GGG--IANFTDVATTFNGIIRALREKESKLKAARMHIFVR 375 (423)
Q Consensus 311 ~~~~~a~~~ll~~~~~~~~~~~vlv~~--~gg--i~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r 375 (423)
..+.++++-..+ ||++++|++.+ ++| .+.+.++. + ++++.+. .+|||++.
T Consensus 98 ~div~~i~~Aa~----D~rIkgivL~i~s~gG~~~a~~~eI~---~----ai~~fk~----sGKpVvA~ 151 (618)
T PRK10949 98 FDIVNTIRQAKD----DRNITGIVLDLKNFAGADQPSMQYIG---K----ALREFRD----SGKPVYAV 151 (618)
T ss_pred HHHHHHHHHHhc----CCCceEEEEEeCCCCCccHHHHHHHH---H----HHHHHHH----hCCeEEEE
Confidence 455666666665 99999999999 444 23444444 4 4444432 36898885
No 179
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=30.93 E-value=1.7e+02 Score=32.06 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCc--CCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 308 PNEEEVLQYARVVIDCATADPDGRKRALLI--GGG--IANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 308 a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~gg--i~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
.+-..+.++++...+ ||++++|++.+ ++| .+.. +-|-+++++.+. .+|||++....
T Consensus 76 ~~l~~i~~~i~~A~~----D~~IkgIvL~i~~~~g~~~~~~-------~ei~~ai~~fk~----sgKpVvA~~~~ 135 (584)
T TIGR00705 76 ISLFDIVNAIRQAAD----DRRIEGLVFDLSNFSGWDSPHL-------VEIGSALSEFKD----SGKPVYAYGTN 135 (584)
T ss_pred cCHHHHHHHHHHHhc----CCCceEEEEEccCCCCCCHHHH-------HHHHHHHHHHHh----cCCeEEEEEcc
Confidence 355567777777766 99999999988 333 2333 344455555432 47999987443
No 180
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=30.30 E-value=79 Score=31.20 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=18.2
Q ss_pred HhHHhhccccCCCcEEEeeccccCccCCcCeeEEe
Q 014514 41 SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALN 75 (423)
Q Consensus 41 ~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~ 75 (423)
+++.+........++|+||..-.+|+ ||.+-
T Consensus 62 ~~l~~~l~~~~~~~~viKP~~G~~G~----Gi~~i 92 (285)
T PF14397_consen 62 EDLEEFLRKHAPDRFVIKPANGSGGK----GILVI 92 (285)
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCcc----CEEEE
Confidence 44444443432268999998655555 55554
No 181
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=30.11 E-value=69 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCC
Q 014514 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST 38 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~ 38 (423)
.|++.|+|++|++| ||.--..+..-.+++
T Consensus 20 vls~eE~~~vLk~l-----~i~~~qLPkI~~~DP 48 (80)
T COG2012 20 VLSEEEAKEVLKEL-----GIEPEQLPKIKASDP 48 (80)
T ss_pred EcCHHHHHHHHHHh-----CCCHHHCCcccccCh
Confidence 48999999999999 875433333333333
No 182
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.86 E-value=1.6e+02 Score=25.64 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=21.3
Q ss_pred eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 376 RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
+||..-+.+.++...+...+|.-+..-|...+++++++.+.+
T Consensus 10 ~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e 51 (132)
T TIGR00640 10 MGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE 51 (132)
T ss_pred eCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH
Confidence 555444444444444444455555555555555555555543
No 183
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=29.79 E-value=38 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCC
Q 014514 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST 38 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~ 38 (423)
.|++.|.+++|++| +|.....+....+++
T Consensus 14 ils~eE~~~lL~~y-----~i~~~qLP~I~~~DP 42 (74)
T PF01191_consen 14 ILSEEEKKELLKKY-----NIKPEQLPKILSSDP 42 (74)
T ss_dssp EE-HHHHHHHHHHT-----T--TTCSSEEETTSH
T ss_pred EcCHHHHHHHHHHh-----CCChhhCCcccccCh
Confidence 37899999999999 876555555555544
No 184
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=29.57 E-value=2.3e+02 Score=25.92 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC---CCCHHHH
Q 014514 328 PDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG---GPNYQTG 384 (423)
Q Consensus 328 ~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~---G~~~~~a 384 (423)
.+.+.+++-+ |||..... ..|.++++.. ++||++... |...-.|
T Consensus 28 ~~~~~i~l~inSPGG~v~~~------~~I~~~i~~~-------~~pvv~~v~p~g~~AaSag 76 (172)
T cd07015 28 DNAEAIIIELDTPGGRADAA------GNIVQRIQQS-------KIPVIIYVYPPGASAASAG 76 (172)
T ss_pred CCCCeEEEEEECCCCCHHHH------HHHHHHHHhc-------CcCEEEEEecCCCeehhHH
Confidence 3566655544 89876532 6677777653 688888865 5444333
No 185
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.98 E-value=3.5e+02 Score=24.92 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=53.8
Q ss_pred HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhh
Q 014514 284 IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 363 (423)
Q Consensus 284 ~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~ 363 (423)
+..+.+... |-+ -+|+|-+.+.+.+.++++-. +|+ .|.+-. .++....-+ +.+++.+++..+
T Consensus 101 ~v~~~l~~~--G~~---vi~lG~~~p~~~l~~~~~~~------~~d--~v~lS~--~~~~~~~~~---~~~i~~lr~~~~ 162 (201)
T cd02070 101 LVATMLEAN--GFE---VIDLGRDVPPEEFVEAVKEH------KPD--ILGLSA--LMTTTMGGM---KEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHC--CCE---EEECCCCCCHHHHHHHHHHc------CCC--EEEEec--cccccHHHH---HHHHHHHHHCCC
Confidence 345677765 333 38899999999887775322 444 333322 222223333 777888877631
Q ss_pred hhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHH
Q 014514 364 KLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 415 (423)
Q Consensus 364 ~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~ 415 (423)
+..+-+.+||.-..+ +.-.. .|...| ..+..+|++.+
T Consensus 163 -----~~~~~i~vGG~~~~~--~~~~~----~GaD~~----~~da~~av~~~ 199 (201)
T cd02070 163 -----RDKVKVMVGGAPVNQ--EFADE----IGADGY----AEDAAEAVAIA 199 (201)
T ss_pred -----CcCCeEEEECCcCCH--HHHHH----cCCcEE----ECCHHHHHHHH
Confidence 112445556643332 23333 676665 36766666654
No 186
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=28.82 E-value=1e+02 Score=30.66 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=78.2
Q ss_pred CcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhHHh
Q 014514 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTDVA 348 (423)
Q Consensus 270 g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~va 348 (423)
-|+|++-.+.|-++..|=-+...|.||+.++=-..--=..-+.+-+++..+++ +++..+.+=.. |....+ .+.+
T Consensus 158 lRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~----~~~lsGp~N~taP~PV~~-~~F~ 232 (297)
T COG1090 158 LRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLE----NEQLSGPFNLTAPNPVRN-KEFA 232 (297)
T ss_pred EEEEEEecCCCcchhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHh----CcCCCCcccccCCCcCcH-HHHH
Confidence 47788877666677777777777888886532111112245788888888888 88887765333 666543 5666
Q ss_pred hhHHHHHHHHHHhhhhhhcccce-EEEE-eCCCCHH---HHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 349 TTFNGIIRALREKESKLKAARMH-IFVR-RGGPNYQ---TGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 349 ~~~~~ii~a~~~~~~~~~~~~~p-vv~r-l~G~~~~---~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
+.+.+++++-. ...+| ...| +-|..+. .+.+.+=+-+.++|.- | .+++.++|....+.
T Consensus 233 ---~al~r~l~RP~----~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~-F---~y~dl~~AL~~il~ 295 (297)
T COG1090 233 ---HALGRALHRPA----ILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQ-F---QYPDLEEALADILK 295 (297)
T ss_pred ---HHHHHHhCCCc----cccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCe-e---ecCCHHHHHHHHHh
Confidence 67766664211 23455 4555 3332222 2223332333447864 3 24899999887764
No 187
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.41 E-value=1.5e+02 Score=25.98 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=38.8
Q ss_pred EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 372 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 372 vv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
|+...+|.-=+-|.+++..+++.+|.-++..|...++++.++.+.+.
T Consensus 5 vigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~ 51 (134)
T TIGR01501 5 VLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET 51 (134)
T ss_pred EEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 44558887778888888777778999999999999999999988774
No 188
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=3.2e+02 Score=25.31 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=17.2
Q ss_pred eeecCCCCCHHHHHHHHHHHhHh
Q 014514 399 LEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 399 ~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+++|| .++.|++++++++...
T Consensus 159 i~v~g--r~a~evv~k~l~ll~k 179 (181)
T COG1992 159 IRVLG--RNAVEVVEKALRLLLK 179 (181)
T ss_pred EEEeC--CCHHHHHHHHHHHHHh
Confidence 46777 8999999999998754
No 189
>PLN02591 tryptophan synthase
Probab=27.84 E-value=5.7e+02 Score=24.79 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=20.2
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Q 014514 304 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLI 337 (423)
Q Consensus 304 lgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~ 337 (423)
..|+|+.+...+.++.+.+ ..++.+=+=+
T Consensus 9 ~aG~P~~e~~~~~~~~l~~-----~Gad~iElGi 37 (250)
T PLN02591 9 TAGDPDLDTTAEALRLLDA-----CGADVIELGV 37 (250)
T ss_pred eCCCCCHHHHHHHHHHHHH-----CCCCEEEECC
Confidence 5689999888888877763 5666444444
No 190
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=27.52 E-value=2.4e+02 Score=26.56 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCC
Q 014514 352 NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGP 404 (423)
Q Consensus 352 ~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~ 404 (423)
++|++++++.. .+.-|++.+.-.....+.+...+ .|||++++..
T Consensus 14 ~al~~~~~~~~-----l~~~i~~visn~~~~~~~~~A~~----~gIp~~~~~~ 57 (207)
T PLN02331 14 RAIHDACLDGR-----VNGDVVVVVTNKPGCGGAEYARE----NGIPVLVYPK 57 (207)
T ss_pred HHHHHHHHcCC-----CCeEEEEEEEeCCCChHHHHHHH----hCCCEEEecc
Confidence 78888876652 12234444444444556666666 8999998653
No 191
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.33 E-value=4.5e+02 Score=24.19 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=54.8
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
..+.+.+...+.+.-++. .+| +++++. ..+..+ .++++++++.+. .+.+.++..++ ..+.
T Consensus 162 ~~~~~~~~a~~~~~~~l~---~~~-~~~i~~-------~~~~~~---~g~~~al~~~g~----~~~~~v~g~d~--~~~~ 221 (257)
T PF13407_consen 162 YTDWDPEDARQAIENLLQ---ANP-VDAIIA-------CNDGMA---LGAAQALQQAGR----AGKVIVVGFDG--SPEA 221 (257)
T ss_dssp ECTTSHHHHHHHHHHHHH---HTT-EEEEEE-------SSHHHH---HHHHHHHHHTTC----TTTSEEEEEEC--HHHH
T ss_pred ccCCCHHHHHHHHHHhhh---cCC-ceEEEe-------CCChHH---HHHHHHHHHcCC----cccceeecCCC--CHHH
Confidence 346777777776666664 355 554432 124555 899999999764 24455666766 4666
Q ss_pred HHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 385 LAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 385 ~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
.+.+++ -.+...++ .++.+....+++++..
T Consensus 222 ~~~i~~----g~~~a~v~---~~~~~~g~~av~~l~~ 251 (257)
T PF13407_consen 222 LEAIKD----GNITATVG---QDPYQQGYKAVEALFD 251 (257)
T ss_dssp HHHHHT----TSSSEEEE---E-HHHHHHHHHHHHHH
T ss_pred HHHHHC----CCCeEEEe---CCHHHHHHHHHHHHHH
Confidence 677775 45543433 4777777777776543
No 192
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=27.20 E-value=3.7e+02 Score=24.98 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 306 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
++.+.+..++.++-+++ .+|++++++.. .+. | .++++++++.+ .+.|.++..++.
T Consensus 165 ~~~~~~~~~~~~~~~l~---~~~~~~~i~~~-------~d~-A---~g~~~al~~~g-----~~~p~v~g~d~~ 219 (272)
T cd06300 165 GDWDQAVAQKAVADFLA---SNPDVDGIWTQ-------GGD-A---VGAVQAFEQAG-----RDIPPVTGEDEN 219 (272)
T ss_pred CCCCHHHHHHHHHHHHH---hCCCcCEEEec-------CCC-c---HHHHHHHHHcC-----CCCcEEEeeCCc
Confidence 44455555555555553 36777765542 234 6 88999998875 356766666654
No 193
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=27.09 E-value=3.7e+02 Score=26.06 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=47.1
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCC------chhHHhhhHHHHHHHHHHhhhhhhcccceEE
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIA------NFTDVATTFNGIIRALREKESKLKAARMHIF 373 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~------~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv 373 (423)
+.++|. +++.+.++.+.+.+ -..+++=+|+ |.... +. +.. ..+++++++. .++||.
T Consensus 103 ~si~g~-~~~~~~~~a~~~~~-----~G~d~ielN~~cP~~~~~~~~~~~~-~~~---~eiv~~vr~~------~~~pv~ 166 (289)
T cd02810 103 ASVGGS-SKEDYVELARKIER-----AGAKALELNLSCPNVGGGRQLGQDP-EAV---ANLLKAVKAA------VDIPLL 166 (289)
T ss_pred EEeccC-CHHHHHHHHHHHHH-----hCCCEEEEEcCCCCCCCCcccccCH-HHH---HHHHHHHHHc------cCCCEE
Confidence 345554 77888888888864 4678888987 32211 22 222 4566666654 368999
Q ss_pred EEeCCCCH-HHHHHHHHhhccccCCcee
Q 014514 374 VRRGGPNY-QTGLAKMRALGEELGIPLE 400 (423)
Q Consensus 374 ~rl~G~~~-~~a~~~l~~~~~~~gip~~ 400 (423)
+++++... ++..++.+. ..++|+...
T Consensus 167 vKl~~~~~~~~~~~~a~~-l~~~Gad~i 193 (289)
T cd02810 167 VKLSPYFDLEDIVELAKA-AERAGADGL 193 (289)
T ss_pred EEeCCCCCHHHHHHHHHH-HHHcCCCEE
Confidence 99776443 233333322 223565443
No 194
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=26.96 E-value=3.2e+02 Score=23.36 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=42.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-||+=.....+.+...++++-++. ++++..|+|+ +.+| +-|-..+.++. .-.|.++-+.+
T Consensus 34 ~nf~~v~~~t~~eei~~~~~~~l~----~~digIIlIt--------e~~a---~~i~~~I~~~~-----~~~PaIieIP~ 93 (115)
T TIGR01101 34 PNFLVVDKNTTVSEIEDCFNRFLK----RDDIAIILIN--------QHIA---EMIRHAVDAHT-----RSIPAVLEIPS 93 (115)
T ss_pred cceeeecCCCCHHHHHHHHHHHhh----cCCeEEEEEc--------HHHH---HHhHHHHHhcC-----CcCCEEEEECC
Confidence 689878888899999999999877 7887544442 4455 44444454543 36898888887
No 195
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=26.36 E-value=5.5e+02 Score=24.11 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=56.5
Q ss_pred HHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhh
Q 014514 283 VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKE 362 (423)
Q Consensus 283 ~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~ 362 (423)
.+....+...|+ .-+|+|-+.+++.+.++.+-. +|+ .|.+-. -++....-+ +.+++.+++.+
T Consensus 106 ~iv~~~l~~~G~-----~Vi~LG~~vp~e~~v~~~~~~------~~~--~V~lS~--~~~~~~~~~---~~~i~~L~~~~ 167 (213)
T cd02069 106 NLVGVILSNNGY-----EVIDLGVMVPIEKILEAAKEH------KAD--IIGLSG--LLVPSLDEM---VEVAEEMNRRG 167 (213)
T ss_pred HHHHHHHHhCCC-----EEEECCCCCCHHHHHHHHHHc------CCC--EEEEcc--chhccHHHH---HHHHHHHHhcC
Confidence 345566666533 449999999999888875322 344 333322 222223323 77777787653
Q ss_pred hhhhcccceEEEEeCCCCHHHHHHH-HHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 363 SKLKAARMHIFVRRGGPNYQTGLAK-MRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 363 ~~~~~~~~pvv~rl~G~~~~~a~~~-l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
.+.+|++.=...+.+-+.+. +.+ ..|-..| ..+..+||+.+-++
T Consensus 168 -----~~~~i~vGG~~~~~~~~~~~~~~~---~~gad~y----~~da~~~v~~~~~~ 212 (213)
T cd02069 168 -----IKIPLLIGGAATSRKHTAVKIAPE---YDGPVVY----VKDASRALGVANKL 212 (213)
T ss_pred -----CCCeEEEEChhcCHHHHhhhhccc---cCCCceE----ecCHHHHHHHHHHh
Confidence 24444433333444444332 111 2465544 36777777765543
No 196
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=26.00 E-value=3.4e+02 Score=28.81 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=42.4
Q ss_pred CCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhc---cc-ceEEEEeCCCCHHHHHHHHHhhccccCCceeec
Q 014514 327 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKA---AR-MHIFVRRGGPNYQTGLAKMRALGEELGIPLEVY 402 (423)
Q Consensus 327 ~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~---~~-~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~ 402 (423)
||+.++.|++.....++.+-+.+.++||.-.++..-..+.+ .+ ..|.+.=||.+...=++++.++ .|.|+++.
T Consensus 361 ~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv---~g~pV~~~ 437 (504)
T PTZ00294 361 RPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADI---LGKDIVVP 437 (504)
T ss_pred CCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHH---hCCceEec
Confidence 45566666666434444444444566666555554332221 11 2245555667777778888875 89999865
Q ss_pred C
Q 014514 403 G 403 (423)
Q Consensus 403 ~ 403 (423)
.
T Consensus 438 ~ 438 (504)
T PTZ00294 438 E 438 (504)
T ss_pred C
Confidence 4
No 197
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=25.85 E-value=72 Score=28.97 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=23.4
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhccccCCceeec
Q 014514 369 RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVY 402 (423)
Q Consensus 369 ~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~ 402 (423)
++|+++.=+|.....+.+.+.++.+..|+|++..
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT 61 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVAT 61 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEc
Confidence 5777776555554566777777777789998743
No 198
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.81 E-value=2.6e+02 Score=26.79 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=41.6
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
+++|-- +|...++..+-+. .|+.|++||-+ +.+= ||+ +++.+.+. .++||+.. |.
T Consensus 158 ~eigr~-~P~~~y~lAk~~~-----~~~~DaiFiSC-------TnlR-t~e-ii~~lE~~------~G~PVvsS----N~ 212 (238)
T COG3473 158 LEIGRQ-EPWAVYRLAKEVF-----TPDADAIFISC-------TNLR-TFE-IIEKLERD------TGVPVVSS----NQ 212 (238)
T ss_pred chhccc-ChHHHHHHHHHhc-----CCCCCeEEEEe-------eccc-cHH-HHHHHHHH------hCCceeec----cH
Confidence 455544 4555666566665 69999999864 2221 223 44445443 47999874 77
Q ss_pred HHHHHHHHhhc
Q 014514 382 QTGLAKMRALG 392 (423)
Q Consensus 382 ~~a~~~l~~~~ 392 (423)
...+..|+..+
T Consensus 213 AT~W~~Lr~~g 223 (238)
T COG3473 213 ATLWMALRLIG 223 (238)
T ss_pred HHHHHHHHHcC
Confidence 88899999843
No 199
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.61 E-value=1.9e+02 Score=25.18 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=34.9
Q ss_pred EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 372 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 372 vv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
|+...+|.-=+-+.+++..+++.+|.-+...|...++++.++.+.+.
T Consensus 3 vigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~ 49 (128)
T cd02072 3 VLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET 49 (128)
T ss_pred EEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 34456666667777777777777888888888888888888888764
No 200
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.24 E-value=2.1e+02 Score=24.99 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 372 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 372 vv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
|+.+.+|..=+-+..++..+....|.-+...|...++++.++.+.+.
T Consensus 7 l~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~ 53 (137)
T PRK02261 7 VLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET 53 (137)
T ss_pred EEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 66779998888898888888888999999999999999999988764
No 201
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.17 E-value=4.6e+02 Score=27.78 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=54.7
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|+|=+++.+++.+..+++.. + + ++.++||+.+-.+. +.+++.+++.- +-+++ +|.+.
T Consensus 330 iIDDS~AhNp~s~~aal~~~-------~--~--iilI~GG~~k~~d~----~~l~~~l~~~~-------~~vi~-iG~~~ 386 (488)
T PRK03369 330 YVDDSKATNPHAARASILAY-------P--R--VVWIAGGLLKGASV----DALVAEMASRL-------VGAVL-IGRDR 386 (488)
T ss_pred EEECCCCCCHHHHHHHHHhC-------C--C--eEEEecCcCCCCCH----HHHHHHHhhhe-------eEEEE-EcCCH
Confidence 56655788888888887522 2 2 46678888875554 45666664431 22333 66554
Q ss_pred HHHHHHHHHhhccccCCceeecCC-----------------------------CCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEELGIPLEVYGP-----------------------------EATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gip~~~~~~-----------------------------~~~~~~av~~~~~~~~~ 421 (423)
.. -.+.|.+. ..++|+..+.. +++|++||..|.+++..
T Consensus 387 ~~-i~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~ 453 (488)
T PRK03369 387 AV-VAEALSRH--APDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAARRLARP 453 (488)
T ss_pred HH-HHHHHHhc--CCCCCEEEeccccccccccccccccccccccccccccccchhhHHHHHHHHHHhCCC
Confidence 33 33344320 03466654421 11699999999987653
No 202
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.08 E-value=1.9e+02 Score=24.00 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=22.5
Q ss_pred EEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHH
Q 014514 373 FVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 416 (423)
Q Consensus 373 v~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~ 416 (423)
+.+.+|..-+-+..++..+....|..+...|...++++.++.+.
T Consensus 4 ~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~ 47 (119)
T cd02067 4 IATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK 47 (119)
T ss_pred EEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 34455555555555555555555555554455555555554443
No 203
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.01 E-value=77 Score=33.74 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=29.9
Q ss_pred ccceEEEEeCCCCHHHHHHHHHhhccccCCcee
Q 014514 368 ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE 400 (423)
Q Consensus 368 ~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~ 400 (423)
.++|+++.=||-.+..|++-|+.+.++.|||+.
T Consensus 229 ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ 261 (617)
T COG3962 229 AKKPLIVAGGGVLYSGAREALRAFAETHGIPVV 261 (617)
T ss_pred cCCCEEEecCceeechHHHHHHHHHHhcCCceE
Confidence 368999999999999999999999999999986
No 204
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.99 E-value=2.2e+02 Score=27.38 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=45.0
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
-+..+++.++++++-+ + +|+.++||+-+ +++- +- .+++.+++. .++||+. .|....
T Consensus 162 ia~i~p~~i~~~~~~~-~----~~~aDAifisC-TnLr-t~-------~vi~~lE~~------lGkPVls----SNqat~ 217 (239)
T TIGR02990 162 MARISPDCIVEAALAA-F----DPDADALFLSC-TALR-AA-------TCAQRIEQA------IGKPVVT----SNQATA 217 (239)
T ss_pred eeecCHHHHHHHHHHh-c----CCCCCEEEEeC-CCch-hH-------HHHHHHHHH------HCCCEEE----HHHHHH
Confidence 3457888888888766 3 78899988763 3332 12 234445443 3799987 477888
Q ss_pred HHHHHhhccccCCce
Q 014514 385 LAKMRALGEELGIPL 399 (423)
Q Consensus 385 ~~~l~~~~~~~gip~ 399 (423)
|..|+. +|++.
T Consensus 218 W~~Lr~----~G~~~ 228 (239)
T TIGR02990 218 WRCLRL----CGDPD 228 (239)
T ss_pred HHHHHH----cCCCC
Confidence 999998 66654
No 205
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.72 E-value=6.5e+02 Score=24.45 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=64.2
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec-CcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~-ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
|.|= |..+.+.+.+-++.++ +.++++++++-. |-....+. . --+.+++...+.. + +|++..|.+
T Consensus 11 Pf~~-g~iD~~~~~~li~~l~-----~~Gv~Gl~~~GstGE~~~Lt~-e-Er~~l~~~~~~~~------~-~vi~gvg~~ 75 (279)
T cd00953 11 PFTG-NKIDKEKFKKHCENLI-----SKGIDYVFVAGTTGLGPSLSF-Q-EKLELLKAYSDIT------D-KVIFQVGSL 75 (279)
T ss_pred CcCC-CCcCHHHHHHHHHHHH-----HcCCcEEEEcccCCCcccCCH-H-HHHHHHHHHHHHc------C-CEEEEeCcC
Confidence 3443 8999999999999998 479999999884 33333222 1 1144555444432 2 378889998
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhH
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+.+++.+..+.+ ++.|. |.| |. ..+.++.++.+..++.
T Consensus 76 ~~~~ai~~a~~a-~~~Gad~v~v~~P~y-~~-~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 76 NLEESIELARAA-KSFGIYAIASLPPYY-FP-GIPEEWLIKYFTDISS 120 (279)
T ss_pred CHHHHHHHHHHH-HHcCCCEEEEeCCcC-CC-CCCHHHHHHHHHHHHh
Confidence 989888887753 33452 433 21 1355666677766553
No 206
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=24.59 E-value=4.8e+02 Score=27.52 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=44.6
Q ss_pred EEEEe-cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHH
Q 014514 333 RALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 411 (423)
Q Consensus 333 vlv~~-~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~a 411 (423)
++..+ ++|.-..|..+ .+...+++.+ .++.++... +.-..|.+-|+..++..++|+|......+|.+.
T Consensus 102 vi~lvG~~GvGKTTtaa----KLA~~l~~~G------~kV~lV~~D-~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT----KLAYYYQRKG------FKPCLVCAD-TFRAGAFDQLKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHH----HHHHHHHHCC------CCEEEEcCc-ccchhHHHHHHHHhhccCCeEEeecCCCCHHHH
Confidence 44444 67766655443 4555555432 233333333 323467777777777789998865555677776
Q ss_pred HHHHHHHhH
Q 014514 412 CKQAIDCIM 420 (423)
Q Consensus 412 v~~~~~~~~ 420 (423)
+..+++.++
T Consensus 171 ~~~~l~~~~ 179 (429)
T TIGR01425 171 ASEGVEKFK 179 (429)
T ss_pred HHHHHHHHH
Confidence 666666554
No 207
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=24.54 E-value=1.8e+02 Score=29.54 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=53.0
Q ss_pred cEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec---C
Q 014514 263 FTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG---G 339 (423)
Q Consensus 263 ~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~---g 339 (423)
.|+++++.++-+..+|- .|.-+.|.....|.--.+- ..|.|+..+-|.+.+++ + +-..++++|-|. +
T Consensus 86 ~N~lePgd~vLv~~~G~-wg~ra~D~~~r~ga~V~~v-~~~~G~~~~le~i~~~l----s----qh~p~~vfv~hgdsST 155 (385)
T KOG2862|consen 86 VNLLEPGDNVLVVSTGT-WGQRAADCARRYGAEVDVV-EADIGQAVPLEEITEKL----S----QHKPKAVFVTHGDSST 155 (385)
T ss_pred HhhcCCCCeEEEEEech-HHHHHHHHHHhhCceeeEE-ecCcccCccHHHHHHHH----H----hcCCceEEEEecCccc
Confidence 35688899999999988 8999999999853322233 78999999999888875 3 445668888883 5
Q ss_pred cCCc
Q 014514 340 GIAN 343 (423)
Q Consensus 340 gi~~ 343 (423)
|+++
T Consensus 156 gV~q 159 (385)
T KOG2862|consen 156 GVLQ 159 (385)
T ss_pred cccc
Confidence 5544
No 208
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.38 E-value=4.7e+02 Score=26.04 Aligned_cols=122 Identities=18% Similarity=0.100 Sum_probs=68.3
Q ss_pred EEEEcCccHHHHHHHHHhccCCCCC----------CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCC
Q 014514 273 WTMVAGGGASVIYADTVGDLGYASE----------LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 342 (423)
Q Consensus 273 ~ii~NG~G~~~~~~D~l~~~g~gg~----------~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~ 342 (423)
-+|+.|.-.+.++.++=... ||. |.|-.|+---+.-+.+.. ++ + +...+ +-+-|..-
T Consensus 73 l~I~aGrrta~l~~~lkk~~--~~~~vVqI~~Prlp~~~fDlvivp~HD~~~~-----~s----~-~~~Ni-lpi~Gs~h 139 (329)
T COG3660 73 LIITAGRRTAPLAFYLKKKF--GGIKVVQIQDPRLPYNHFDLVIVPYHDWREE-----LS----D-QGPNI-LPINGSPH 139 (329)
T ss_pred eEEecccchhHHHHHHHHhc--CCceEEEeeCCCCCcccceEEeccchhhhhh-----hh----c-cCCce-eeccCCCC
Confidence 35688888899999988774 442 578888877776666554 22 2 22222 22335544
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHH------HHHH---HHHhhccccCCceeecCCCCCHHHHH
Q 014514 343 NFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQ------TGLA---KMRALGEELGIPLEVYGPEATMTGIC 412 (423)
Q Consensus 343 ~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~------~a~~---~l~~~~~~~gip~~~~~~~~~~~~av 412 (423)
+.++.- ..+.++..+++.+..+|.|+. +||+|-. .+-+ .|.+-.++.|+|+++.-...||+.+-
T Consensus 140 ~Vt~~~------lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~ 213 (329)
T COG3660 140 NVTSQR------LAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVK 213 (329)
T ss_pred cccHHH------hhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHH
Confidence 444322 223344333333456777777 8887632 2221 22233344788887665566766544
Q ss_pred H
Q 014514 413 K 413 (423)
Q Consensus 413 ~ 413 (423)
.
T Consensus 214 s 214 (329)
T COG3660 214 S 214 (329)
T ss_pred H
Confidence 3
No 209
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=23.84 E-value=6.7e+02 Score=26.63 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHh
Q 014514 282 SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREK 361 (423)
Q Consensus 282 ~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~ 361 (423)
+...+.++... | -|...+.+--+...+ . -+.+++ ||+++.+ .|+|- +.+. +.|.++..+
T Consensus 176 a~~l~~~~~~a--g-lP~Gv~nvv~g~~~~-~---g~~l~~----~p~v~~i---~FTGS---t~~G---~~i~~~Aa~- 234 (472)
T COG1012 176 ALALAELAAEA--G-LPAGVLNVVTGGGAE-V---GDALVA----HPDVDAI---SFTGS---TAVG---RAIAAAAAA- 234 (472)
T ss_pred HHHHHHHHHHh--C-CCCCeEEEEeCCCch-H---HHHHhc----CCCCCEE---EEECC---hHHH---HHHHHHHhh-
Confidence 55566777663 5 565444332222222 2 233455 8999833 34443 4455 777766543
Q ss_pred hhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 362 ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 362 ~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
+-+|+..=+||.+ |..|+... +.+.|+..++.
T Consensus 235 ------~~k~~~lELGGk~-----------------p~IV~~dA-dl~~Av~~~~~ 266 (472)
T COG1012 235 ------NLKPVTLELGGKS-----------------PAIVLEDA-DLDAAVDAAVF 266 (472)
T ss_pred ------cCCcEEEECCCCC-----------------CeEECCCC-CHHHHHHHHHH
Confidence 2578888899975 66666544 55666666554
No 210
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=23.58 E-value=5.3e+02 Score=27.12 Aligned_cols=37 Identities=19% Similarity=0.530 Sum_probs=26.4
Q ss_pred HHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 384 GLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 384 a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+.+-|...+...|+|++..+...+|.+.+..+++.+.
T Consensus 143 a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~ 179 (428)
T TIGR00959 143 AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK 179 (428)
T ss_pred HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH
Confidence 5555555556689999877666788888777777653
No 211
>PLN02295 glycerol kinase
Probab=23.56 E-value=3.5e+02 Score=28.84 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=42.2
Q ss_pred CCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcc--------c-ceEEEEeCCCCHHHHHHHHHhhccccCC
Q 014514 327 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAA--------R-MHIFVRRGGPNYQTGLAKMRALGEELGI 397 (423)
Q Consensus 327 ~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~--------~-~pvv~rl~G~~~~~a~~~l~~~~~~~gi 397 (423)
||+.++.++++....++.+-+-++++||.-.++..-..+.+. . ..|.+.=||.+...=++++.++ .|.
T Consensus 362 ~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv---~g~ 438 (512)
T PLN02295 362 RDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADL---LGS 438 (512)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHh---cCC
Confidence 456677776664444444444445666665565544433211 1 1244445666667778888875 899
Q ss_pred ceeec
Q 014514 398 PLEVY 402 (423)
Q Consensus 398 p~~~~ 402 (423)
|+.+.
T Consensus 439 pV~~~ 443 (512)
T PLN02295 439 PVVRP 443 (512)
T ss_pred ceEec
Confidence 99854
No 212
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.40 E-value=6.7e+02 Score=28.33 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=55.3
Q ss_pred eeccC-CCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 302 AEYSG-APNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 302 lDlgG-~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
+++++ ..+++.+.++. .+ .+.+. |.+++-.....+.+ ..+++++++.+. .+ +.+-+||.-
T Consensus 613 V~~~~~~~s~e~~v~aa---~~-----~~a~i--vvlcs~d~~~~e~~---~~l~~~Lk~~G~----~~--v~vl~GG~~ 673 (714)
T PRK09426 613 VDIGPLFQTPEEAARQA---VE-----NDVHV--VGVSSLAAGHKTLV---PALIEALKKLGR----ED--IMVVVGGVI 673 (714)
T ss_pred EecCCCCCCHHHHHHHH---HH-----cCCCE--EEEeccchhhHHHH---HHHHHHHHhcCC----CC--cEEEEeCCC
Confidence 45664 67888666654 32 33442 33344333344445 888998888742 12 434467752
Q ss_pred HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 014514 381 YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 419 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~ 419 (423)
..+..+.+++ +|+.-|++ +-++..+.+....+..
T Consensus 674 ~~~~~~~l~~----aGvD~~i~-~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 674 PPQDYDFLYE----AGVAAIFG-PGTVIADAAIDLLELL 707 (714)
T ss_pred ChhhHHHHHh----CCCCEEEC-CCCCHHHHHHHHHHHH
Confidence 2333366777 89987755 5678888887776654
No 213
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=23.12 E-value=1.9e+02 Score=29.99 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=37.2
Q ss_pred Cc-EEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEE
Q 014514 53 SR-LVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYY 118 (423)
Q Consensus 53 ~p-vVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Ely 118 (423)
.| |+||++.-.=|- ||....+.+|+...-++-.++-...+ ....|+.|+|||-+. ..|.+
T Consensus 257 ~PfViVKADaGTYGM----GImtv~~~~ev~~LNrK~RnKM~~~K-eg~~V~~VIiQEGV~-T~E~~ 317 (403)
T TIGR02049 257 QPYVIVKADAGTYGM----GIMTATSGEEVLGLNRKERNKMAKVK-EGLEVSEVIIQEGVY-TFEMF 317 (403)
T ss_pred CCeEEEEcCCCCCCc----eEEEecCHHHHHHhhhhhhhhccccc-CCCccceEEEecCcc-eeeee
Confidence 34 577877632122 89999999998864444333221111 123899999999987 45554
No 214
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.97 E-value=4.3e+02 Score=24.33 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=38.9
Q ss_pred EEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 372 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 372 vv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
++++..|..-+-|..++..+....|..+...|...++++.++.+.+.
T Consensus 86 l~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~ 132 (201)
T cd02070 86 VIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH 132 (201)
T ss_pred EEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 66668988888999999888888999998888888888888877653
No 215
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=22.86 E-value=4.7e+02 Score=28.14 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=41.5
Q ss_pred CCCCCEEEEEecCcCCc---hhHHhhhHHHHHHHHHHhhhhhhcccc---eEEEEeCCCCHHHHHHHHHhhccccCCcee
Q 014514 327 DPDGRKRALLIGGGIAN---FTDVATTFNGIIRALREKESKLKAARM---HIFVRRGGPNYQTGLAKMRALGEELGIPLE 400 (423)
Q Consensus 327 ~~~~~~vlv~~~ggi~~---~~~va~~~~~ii~a~~~~~~~~~~~~~---pvv~rl~G~~~~~a~~~l~~~~~~~gip~~ 400 (423)
||+.++.|+++...-++ .+-+-++.+||.-.++..-..+.+... .|.+.=||.+...=++++.++ .|.|+.
T Consensus 396 dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADv---lg~pV~ 472 (541)
T TIGR01315 396 DPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADA---CDMPVL 472 (541)
T ss_pred CCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHH---HCCeeE
Confidence 55666677666433333 112234556666555554333322221 255555667777778899886 899998
Q ss_pred ec
Q 014514 401 VY 402 (423)
Q Consensus 401 ~~ 402 (423)
+.
T Consensus 473 ~~ 474 (541)
T TIGR01315 473 IP 474 (541)
T ss_pred ec
Confidence 64
No 216
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=22.80 E-value=7.6e+02 Score=27.40 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=25.1
Q ss_pred hccCCcEEecCC--CcEEEEEcCccHHHHHHHHHhcc
Q 014514 258 SASLKFTVLNPK--GRIWTMVAGGGASVIYADTVGDL 292 (423)
Q Consensus 258 ~~~~~~~~v~l~--g~I~ii~NG~G~~~~~~D~l~~~ 292 (423)
.++.+++.+..+ ++||||+.|.. -.-.-++|...
T Consensus 234 ~~~~~~n~v~~~~~~~lGII~~G~a-y~yVkeAl~~l 269 (640)
T COG4231 234 INANPLNRVEGSDDAKLGIIASGIA-YNYVKEALEDL 269 (640)
T ss_pred HhhCcccccccCCCCceEEEecCcc-HHHHHHHHHHc
Confidence 455577788777 99999998874 33356888875
No 217
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=22.58 E-value=6.8e+02 Score=24.72 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCceeeccCCCCHHHHHHHHHHH------HhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccce
Q 014514 298 LGNYAEYSGAPNEEEVLQYARVV------IDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMH 371 (423)
Q Consensus 298 ~aN~lDlgG~a~~~~~~~a~~~l------l~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~p 371 (423)
|..|+ +-+.+.++.+.++++.+ |+++.-++...+++++|.||.-.--+- +.+-+++.++...... +.-
T Consensus 107 P~qf~-vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~--al~RF~~~~~~L~~~i---r~r 180 (275)
T PF03851_consen 107 PDQFT-VLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEA--ALERFIENFKRLPESI---RKR 180 (275)
T ss_dssp --TT---TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHH--HHHHHHHHHHT--HHH---HTT
T ss_pred CCcce-eCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHH--HHHHHHHHHhhCCHhh---hhc
Confidence 78887 77889999999998865 555555555467888887776553332 2355555555443221 112
Q ss_pred EEEE--eCCCCHHHHHHHHHhhccccCCcee
Q 014514 372 IFVR--RGGPNYQTGLAKMRALGEELGIPLE 400 (423)
Q Consensus 372 vv~r--l~G~~~~~a~~~l~~~~~~~gip~~ 400 (423)
+++= =-..+.++-+.+-++ .|||+.
T Consensus 181 L~lENDd~~yt~~d~L~ic~~----~giP~V 207 (275)
T PF03851_consen 181 LTLENDDKTYTVEDVLPICEK----LGIPMV 207 (275)
T ss_dssp EEEE--SSS--HHHHHHHHHH----HT--EE
T ss_pred EEEecCCCccCHHHHHHHHHH----hCCCEE
Confidence 3333 112344555555555 899985
No 218
>PRK10867 signal recognition particle protein; Provisional
Probab=22.44 E-value=6.3e+02 Score=26.63 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=42.0
Q ss_pred cCcCCchhHHhhhHHHHHHHHHHh-hhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHH
Q 014514 338 GGGIANFTDVATTFNGIIRALREK-ESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 416 (423)
Q Consensus 338 ~ggi~~~~~va~~~~~ii~a~~~~-~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~ 416 (423)
++|--..+.. -.++..+++. + .++.++... +.-..+.+-|+..++..|+|+|..+...+|.+.+..++
T Consensus 108 ~~GsGKTTta----akLA~~l~~~~G------~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 108 LQGAGKTTTA----GKLAKYLKKKKK------KKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCcHHHHH----HHHHHHHHHhcC------CcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 6666664443 3455555544 2 233333333 22234455555555678999887655678888888787
Q ss_pred HHhH
Q 014514 417 DCIM 420 (423)
Q Consensus 417 ~~~~ 420 (423)
+.++
T Consensus 177 ~~a~ 180 (433)
T PRK10867 177 EEAK 180 (433)
T ss_pred HHHH
Confidence 7664
No 219
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.28 E-value=7.8e+02 Score=24.43 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=55.8
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec--CcCCchhH----------------------------Hhh
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTD----------------------------VAT 349 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~--ggi~~~~~----------------------------va~ 349 (423)
.-..+..+.+.+.+.+.++-+-+ |+++++++|-.| ..+....- +=.
T Consensus 65 ~~~~l~~~~~~~~l~~~I~~lN~----d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~Pc 140 (284)
T PRK14179 65 EVVRLPETISQEELLDLIERYNQ----DPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIPC 140 (284)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcCC
Confidence 34667777777777777666655 777777777663 33321100 001
Q ss_pred hHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCC-CCHHHHHH
Q 014514 350 TFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPE-ATMTGICK 413 (423)
Q Consensus 350 ~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~-~~~~~av~ 413 (423)
|..|+++.++.++-.+ .++.+++- +.|.--.---.+|.+ .|..+.++... .++.+.++
T Consensus 141 Tp~avi~lL~~~~i~l--~Gk~v~vIG~S~ivG~Pla~lL~~----~gatVtv~~s~t~~l~~~~~ 200 (284)
T PRK14179 141 TPAGIMEMFREYNVEL--EGKHAVVIGRSNIVGKPMAQLLLD----KNATVTLTHSRTRNLAEVAR 200 (284)
T ss_pred CHHHHHHHHHHhCCCC--CCCEEEEECCCCcCcHHHHHHHHH----CCCEEEEECCCCCCHHHHHh
Confidence 4488999888775332 23444433 444332222234444 68877776322 33444443
No 220
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=22.05 E-value=6.6e+02 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=13.5
Q ss_pred cEEEEEcCccHHHHHHHHHhc
Q 014514 271 RIWTMVAGGGASVIYADTVGD 291 (423)
Q Consensus 271 ~I~ii~NG~G~~~~~~D~l~~ 291 (423)
+|+|+.+|+. +.+...++..
T Consensus 2 kiliiG~G~~-~~~l~~~~~~ 21 (423)
T TIGR00877 2 KVLVIGNGGR-EHALAWKLAQ 21 (423)
T ss_pred EEEEECCChH-HHHHHHHHHh
Confidence 5788877775 6666666655
No 221
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.91 E-value=3.8e+02 Score=28.40 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCC-----ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELG-----NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 343 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~a-----N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~ 343 (423)
..+||+||.=.|+++ -|.+.-. .-=-|. =|.=+=|+--++.+.++++..=+ ..++|.++|-=+|| +
T Consensus 135 p~~IGVITS~tgAai--rDIl~~~-~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~----~~~~DvlIVaRGGG--S 205 (440)
T COG1570 135 PKKIGVITSPTGAAL--RDILHTL-SRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQ----RGDVDVLIVARGGG--S 205 (440)
T ss_pred CCeEEEEcCCchHHH--HHHHHHH-HhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhc----cCCCCEEEEecCcc--h
Confidence 567999998887654 4666542 001132 12334466666677777766644 44465333322433 2
Q ss_pred hhHHhh-hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 344 FTDVAT-TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 344 ~~~va~-~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
-+|.++ +=+.++.|+-. .+.||+.-+|-.. +.. |.++- +.+. ..||+.|++.++-
T Consensus 206 iEDLW~FNdE~vaRAi~~-------s~iPvISAVGHEt-D~t---L~DfV--AD~R------ApTPTaAAE~~vP 261 (440)
T COG1570 206 IEDLWAFNDEIVARAIAA-------SRIPVISAVGHET-DFT---LADFV--ADLR------APTPTAAAELVVP 261 (440)
T ss_pred HHHHhccChHHHHHHHHh-------CCCCeEeecccCC-Ccc---HHHhh--hhcc------CCCchHHHHHhCC
Confidence 344442 11334444433 2577777777643 222 22211 2222 2689999887753
No 222
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=21.45 E-value=7.6e+02 Score=24.03 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=62.8
Q ss_pred cEEEEEcCccHHHHHHHHHhccCCCCCCCceeecc--CCCCHHHH------------HHHHHHHHhhhccCCCCCEEEEE
Q 014514 271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYS--GAPNEEEV------------LQYARVVIDCATADPDGRKRALL 336 (423)
Q Consensus 271 ~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlg--G~a~~~~~------------~~a~~~ll~~~~~~~~~~~vlv~ 336 (423)
++|+|.-|+-.+-.-+-.+... +.. +.+- .+.++++. +.-++-+++ ++++++|.|-
T Consensus 5 rvgiiG~G~~~~~~~~~~~~~~--~~~----~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~----~~~iD~V~Ia 74 (342)
T COG0673 5 RVGIIGAGGIAGKAHLPALAAL--GGG----LELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLA----DPDIDAVYIA 74 (342)
T ss_pred EEEEEcccHHHHHHhHHHHHhC--CCc----eEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhc----CCCCCEEEEc
Confidence 5788866644444445555542 211 1121 23444442 222444555 8889988876
Q ss_pred ecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHH
Q 014514 337 IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 415 (423)
Q Consensus 337 ~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~ 415 (423)
.|... +++-+..|++. +++|++= =-..+.+++.++.+.+ +++|+...+.- -.-..-++..+
T Consensus 75 tp~~~--------H~e~~~~AL~a--------GkhVl~EKPla~t~~ea~~l~~~a-~~~~~~l~v~~-~~Rf~p~~~~~ 136 (342)
T COG0673 75 TPNAL--------HAELALAALEA--------GKHVLCEKPLALTLEEAEELVELA-RKAGVKLMVGF-NRRFDPAVQAL 136 (342)
T ss_pred CCChh--------hHHHHHHHHhc--------CCEEEEcCCCCCCHHHHHHHHHHH-HHcCCceeeeh-hhhcCHHHHHH
Confidence 66442 22444555533 5666666 2334678887666543 34487765432 12223445555
Q ss_pred HHHhH
Q 014514 416 IDCIM 420 (423)
Q Consensus 416 ~~~~~ 420 (423)
.++..
T Consensus 137 k~li~ 141 (342)
T COG0673 137 KELID 141 (342)
T ss_pred HHHHh
Confidence 55544
No 223
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.31 E-value=7.1e+02 Score=24.46 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=39.1
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCC--CCCEEEEEe--cCc-----CC-chhHHhhhHHHHHHHHHHhhhhhhcccce
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADP--DGRKRALLI--GGG-----IA-NFTDVATTFNGIIRALREKESKLKAARMH 371 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~--~~~~vlv~~--~gg-----i~-~~~~va~~~~~ii~a~~~~~~~~~~~~~p 371 (423)
+.+.|. ++.+.+.++.+.+ .. ..+++=+|+ |.. +. +++ .. .-|++++++. .++|
T Consensus 96 vsi~g~--~~~~~~~~~~~~~----~~~~~ad~ielN~sCPn~~~~~~~~~~~~-~~---~~i~~~v~~~------~~iP 159 (294)
T cd04741 96 ISVTGS--AEDIAAMYKKIAA----HQKQFPLAMELNLSCPNVPGKPPPAYDFD-AT---LEYLTAVKAA------YSIP 159 (294)
T ss_pred EECCCC--HHHHHHHHHHHHh----hccccccEEEEECCCCCCCCcccccCCHH-HH---HHHHHHHHHh------cCCC
Confidence 556666 7788888777754 22 678999999 321 11 223 23 4577777665 3699
Q ss_pred EEEEeCC
Q 014514 372 IFVRRGG 378 (423)
Q Consensus 372 vv~rl~G 378 (423)
|++++.-
T Consensus 160 v~vKl~p 166 (294)
T cd04741 160 VGVKTPP 166 (294)
T ss_pred EEEEeCC
Confidence 9999654
No 224
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=21.25 E-value=8.8e+02 Score=25.23 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=36.7
Q ss_pred HHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHh
Q 014514 282 SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREK 361 (423)
Q Consensus 282 ~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~ 361 (423)
+....+++... | -|.+-+.+--+...+ ..+.+++ +|+++.|. |+|- ..+. +.|.++..++
T Consensus 163 ~~~l~~~~~~a--G-lP~gvv~~v~g~~~~----~~~~L~~----~~~v~~V~---fTGs---~~~g---~~v~~~aa~~ 222 (456)
T cd07110 163 ELELAEIAAEA--G-LPPGVLNVVTGTGDE----AGAPLAA----HPGIDKIS---FTGS---TATG---SQVMQAAAQD 222 (456)
T ss_pred HHHHHHHHHHc--C-CCCCcEEEEecCchH----HHHHHhc----CCCCCEEE---EECC---HHHH---HHHHHHHhhc
Confidence 34445666653 3 354444443322222 2344555 88888433 3332 3444 5555544332
Q ss_pred hhhhhcccceEEEEeCCCC
Q 014514 362 ESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 362 ~~~~~~~~~pvv~rl~G~~ 380 (423)
-+|++.-+||.+
T Consensus 223 -------~~~~~lElgG~~ 234 (456)
T cd07110 223 -------IKPVSLELGGKS 234 (456)
T ss_pred -------CCeEEEEcCCCC
Confidence 467888888864
No 225
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=21.09 E-value=4.2e+02 Score=28.21 Aligned_cols=94 Identities=17% Similarity=0.303 Sum_probs=59.0
Q ss_pred CCce--eeccCCCCHHHHHHHHHHHHhhhccCCC-CCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceE
Q 014514 298 LGNY--AEYSGAPNEEEVLQYARVVIDCATADPD-GRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHI 372 (423)
Q Consensus 298 ~aN~--lDlgG~a~~~~~~~a~~~ll~~~~~~~~-~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pv 372 (423)
.+|| +=+|.+.+++.+.+.++.| ||+ .-+-|..| +|+ +.|+...-.+|++.++.+ ...|
T Consensus 298 I~NPIGvKvGPs~~pdel~~L~~~L------nP~~epGRlTLI~RmGa----~kV~~~LP~Li~aV~~~G------~~Vv 361 (474)
T PLN02291 298 VANPLGIKVSDKMDPEELVKLIEIL------NPQNKPGRLTIIVRMGA----EKLRVKLPHLIRAVRRAG------QIVT 361 (474)
T ss_pred CCCCeeEEECCCCCHHHHHHHHHHh------CCCCCCceEEEEeccch----HHHHHHHHHHHHHHHHcC------CceE
Confidence 5788 6689999999888887776 554 33444444 553 455544578888888875 2446
Q ss_pred EEE--eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 373 FVR--RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 373 v~r--l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
..| |-|+.... .+|+-+.-| +++-+=|+.|.+.-+
T Consensus 362 W~cDPMHGNT~~t----------~~G~KTR~f---~~Il~Ev~~ff~vh~ 398 (474)
T PLN02291 362 WVSDPMHGNTIKA----------PSGLKTRPF---DAIRAEVRAFFDVHE 398 (474)
T ss_pred EeecCCCCCceeC----------CCCccCCcH---HHHHHHHHHHHHHHH
Confidence 777 88976432 256655422 455444555555433
No 226
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=3.4e+02 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 383 TGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 383 ~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
.|...|++ +||-+|... ..|.+|++..+.+
T Consensus 77 ~a~~~l~~----~GIkv~~~~-~~~V~e~i~~~~~ 106 (121)
T COG1433 77 NAYNALKA----AGIKVYVAP-GGTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHH----cCcEEEecC-CCCHHHHHHHHhc
Confidence 35667777 888887653 4777888777653
No 227
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=20.47 E-value=3.7e+02 Score=22.44 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC-HHHHHHHHHhh
Q 014514 313 VLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN-YQTGLAKMRAL 391 (423)
Q Consensus 313 ~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~-~~~a~~~l~~~ 391 (423)
+..++.++.+ ++++.++++..= ....+.+ .++++.+++.+ .++||++-..-.. ..--.+.|..
T Consensus 26 ~dd~~~~i~~----~~~i~avvi~~d---~~~~~~~---~~ll~~i~~~~-----~~iPVFl~~~~~~~~~l~~~~l~~- 89 (115)
T PF03709_consen 26 TDDALAIIES----FTDIAAVVISWD---GEEEDEA---QELLDKIRERN-----FGIPVFLLAERDTTEDLPAEVLGE- 89 (115)
T ss_dssp HHHHHHHHHC----TTTEEEEEEECH---HHHHHHH---HHHHHHHHHHS-----TT-EEEEEESCCHHHCCCHHHHCC-
T ss_pred hHHHHHHHHh----CCCeeEEEEEcc---cccchhH---HHHHHHHHHhC-----CCCCEEEEecCCCcccCCHHHHhh-
Confidence 3466666666 899988887653 1223555 88999888876 4899888765331 1122345543
Q ss_pred ccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 392 GEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 392 ~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+--|++-.++|++-.+++....+..
T Consensus 90 -----v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 90 -----VDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp -----ESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred -----ccEEEEecCCCHHHHHHHHHHHHHh
Confidence 2335555678999888887776653
No 228
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=20.32 E-value=4e+02 Score=23.77 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=17.5
Q ss_pred ccceEEEEeCCCCHHHHHHHHH
Q 014514 368 ARMHIFVRRGGPNYQTGLAKMR 389 (423)
Q Consensus 368 ~~~pvv~rl~G~~~~~a~~~l~ 389 (423)
.++|+++.+.|.....|..+.-
T Consensus 92 ~~~p~Ia~v~G~a~g~G~~la~ 113 (195)
T cd06558 92 LPKPVIAAVNGAALGGGLELAL 113 (195)
T ss_pred CCCCEEEEECCeeecHHHHHHH
Confidence 5799999999987777766664
No 229
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.23 E-value=1.7e+02 Score=23.19 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=23.3
Q ss_pred EEEEeCCCCHHHHHHHHHhhccccCCceeecC
Q 014514 372 IFVRRGGPNYQTGLAKMRALGEELGIPLEVYG 403 (423)
Q Consensus 372 vv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~ 403 (423)
-++-+..+-.+.-++.+.++.+..+||++.|+
T Consensus 29 klViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 29 KEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 34445555556677888877888999998775
No 230
>PLN02467 betaine aldehyde dehydrogenase
Probab=20.19 E-value=9.6e+02 Score=25.58 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHh
Q 014514 282 SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREK 361 (423)
Q Consensus 282 ~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~ 361 (423)
+....+++... | -|.+-+.+--+...+ . .+.++. +|.++.|. |+| +..+. +.|.++..++
T Consensus 194 ~~~l~~~~~ea--g-~P~gvv~~v~g~~~~-~---~~~L~~----~~~v~~v~---fTG---s~~~g---~~v~~~aa~~ 253 (503)
T PLN02467 194 CLELADICREV--G-LPPGVLNVVTGLGTE-A---GAPLAS----HPGVDKIA---FTG---STATG---RKIMTAAAQM 253 (503)
T ss_pred HHHHHHHHHHc--C-cCcCeEEEEeCCchh-H---HHHHhc----CCCCCEEE---EEC---CHHHH---HHHHHHHhcc
Confidence 33445666653 3 455444444332222 2 233445 78887333 444 23444 6666654432
Q ss_pred hhhhhcccceEEEEeCCCC
Q 014514 362 ESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 362 ~~~~~~~~~pvv~rl~G~~ 380 (423)
-+|++.-+||.|
T Consensus 254 -------~~~~~lElGG~~ 265 (503)
T PLN02467 254 -------VKPVSLELGGKS 265 (503)
T ss_pred -------CCcEEEECCCCC
Confidence 467888888865
No 231
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=20.13 E-value=2e+02 Score=26.97 Aligned_cols=48 Identities=35% Similarity=0.461 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceee
Q 014514 350 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEV 401 (423)
Q Consensus 350 ~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~ 401 (423)
|+-.+|+++++..+ .+.-+++.+-.-..++.++.+.++.++.|+|+.+
T Consensus 136 T~lnli~al~~~~p----~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~ 183 (191)
T PF15609_consen 136 TFLNLIRALHAKYP----RKRYVVASLLDWRSEEDRARFEALAEELGIPIDV 183 (191)
T ss_pred HHHHHHHHHHHhCC----CceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEE
Confidence 44677778777643 3445666666656677777777777789999864
No 232
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=20.11 E-value=4.8e+02 Score=27.60 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=58.7
Q ss_pred CCce--eeccCCCCHHHHHHHHHHHHhhhccCCC-CCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceE
Q 014514 298 LGNY--AEYSGAPNEEEVLQYARVVIDCATADPD-GRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHI 372 (423)
Q Consensus 298 ~aN~--lDlgG~a~~~~~~~a~~~ll~~~~~~~~-~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pv 372 (423)
.+|| +=+|.+.+++.+.+.++.| ||+ .-+-|..| .|+ +.|....-.+|++.++.+ ...|
T Consensus 278 I~NPIGvKvGP~~~p~~l~~L~~~L------nP~~epGRlTLI~RmGa----~kV~~~LP~li~aV~~~G------~~Vv 341 (443)
T TIGR01358 278 VRNPIGIKVGPSMTPDELLRLIERL------NPENEPGRLTLISRMGA----DKIADKLPPLLRAVKAAG------RRVV 341 (443)
T ss_pred CCCCeeEEECCCCCHHHHHHHHHHh------CCCCCCceEEEEeccCc----hHHHHhHHHHHHHHHHcC------CceE
Confidence 5788 6689999999888877776 564 33444444 553 455544478888888875 2446
Q ss_pred EEE--eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 373 FVR--RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 373 v~r--l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
..| |-|+....+ +|+-+.-| +++-+=|+.|.+.-+
T Consensus 342 W~cDPMHGNT~~t~----------~G~KTR~f---~~Il~Ev~~ff~vh~ 378 (443)
T TIGR01358 342 WVCDPMHGNTEEAA----------SGYKTRRF---DDIRSEVKGFFEVHR 378 (443)
T ss_pred EeecCCCCCceeCC----------CCccCCcH---HHHHHHHHHHHHHHH
Confidence 677 889764422 56655422 444444555555433
No 233
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.08 E-value=2.8e+02 Score=27.57 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=27.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG 338 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ 338 (423)
...++..+.+.+.+.+.++-+-+ |++++++++-.|
T Consensus 65 ~~~~l~~~~~~~el~~~I~~lN~----D~~V~GIlvq~P 99 (284)
T PRK14190 65 ELYEFPADITEEELLALIDRLNA----DPRINGILVQLP 99 (284)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCCCCEEEEeCC
Confidence 44677888888888887777765 888888888874
No 234
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=20.04 E-value=8.5e+02 Score=25.65 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhh
Q 014514 284 IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 363 (423)
Q Consensus 284 ~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~ 363 (423)
...+++... |-|.+.+.+-.+...+ ..+.+++ +|.++.|. |+|- ..+. +.|.++..++
T Consensus 189 ~l~~~~~~a---glP~gv~~~v~g~~~~----~~~~L~~----~~~vd~V~---fTGS---~~~g---~~i~~~a~~~-- 246 (484)
T cd07144 189 YFANLVKEA---GFPPGVVNIIPGYGAV----AGSALAE----HPDVDKIA---FTGS---TATG---RLVMKAAAQN-- 246 (484)
T ss_pred HHHHHHHHh---CcCCCcEEEEecCCch----HHHHHhc----CCCcCEEE---EECc---HHHH---HHHHHHHHhc--
Confidence 344555553 2365555554332222 2233455 78887333 4442 3444 6565544332
Q ss_pred hhhcccceEEEEeCCCC
Q 014514 364 KLKAARMHIFVRRGGPN 380 (423)
Q Consensus 364 ~~~~~~~pvv~rl~G~~ 380 (423)
.+|++.-+||.|
T Consensus 247 -----~~~~~lElGGk~ 258 (484)
T cd07144 247 -----LKAVTLECGGKS 258 (484)
T ss_pred -----CCeEEEEcCCCC
Confidence 366777788854
Done!