Query 014514
Match_columns 423
No_of_seqs 193 out of 1862
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 1.8E-95 6E-100 746.6 29.9 414 1-417 1-420 (425)
2 3pff_A ATP-citrate synthase; p 100.0 1.1E-91 3.9E-96 763.7 28.9 415 1-418 1-421 (829)
3 2fp4_B Succinyl-COA ligase [GD 100.0 2.1E-81 7.2E-86 639.6 39.3 374 4-421 1-394 (395)
4 2nu8_B SCS-beta, succinyl-COA 100.0 4.2E-81 1.5E-85 636.6 38.2 374 4-421 1-387 (388)
5 3ufx_B Succinyl-COA synthetase 100.0 1.6E-80 5.5E-85 633.8 30.1 368 4-422 1-377 (397)
6 1wr2_A Hypothetical protein PH 100.0 6.4E-34 2.2E-38 271.0 14.8 204 1-221 15-237 (238)
7 2csu_A 457AA long hypothetical 99.8 8.4E-21 2.9E-25 196.9 13.8 158 221-420 262-446 (457)
8 3dmy_A Protein FDRA; predicted 99.3 2.7E-12 9.2E-17 133.1 10.2 128 269-421 249-414 (480)
9 3glk_A Acetyl-COA carboxylase 98.7 1.1E-07 3.7E-12 100.4 13.2 106 6-133 163-297 (540)
10 3jrx_A Acetyl-COA carboxylase 98.7 1.4E-07 4.8E-12 100.3 14.1 105 7-133 180-313 (587)
11 4eg0_A D-alanine--D-alanine li 98.7 4.2E-07 1.4E-11 88.9 16.2 103 7-133 107-213 (317)
12 3ouz_A Biotin carboxylase; str 98.7 2.2E-07 7.4E-12 95.3 14.7 109 7-133 119-229 (446)
13 2cqy_A Propionyl-COA carboxyla 98.7 1.6E-09 5.4E-14 88.8 -1.1 99 5-121 6-106 (108)
14 3aw8_A PURK, phosphoribosylami 98.6 2E-07 6.9E-12 92.9 11.6 102 6-133 95-197 (369)
15 3e5n_A D-alanine-D-alanine lig 98.6 7.4E-07 2.5E-11 90.1 15.8 99 7-130 159-261 (386)
16 3k5i_A Phosphoribosyl-aminoimi 98.6 3.5E-07 1.2E-11 92.8 13.4 99 7-132 123-224 (403)
17 3q2o_A Phosphoribosylaminoimid 98.6 1.1E-06 3.7E-11 88.5 15.9 100 7-132 112-212 (389)
18 3mjf_A Phosphoribosylamine--gl 98.5 3.5E-07 1.2E-11 93.7 12.1 106 7-132 107-212 (431)
19 4e4t_A Phosphoribosylaminoimid 98.5 1E-06 3.5E-11 89.9 15.4 100 7-133 133-237 (419)
20 3lp8_A Phosphoribosylamine-gly 98.5 5.5E-07 1.9E-11 92.6 12.8 101 7-126 123-223 (442)
21 1kjq_A GART 2, phosphoribosylg 98.5 8.3E-07 2.8E-11 88.9 13.6 99 9-127 114-213 (391)
22 3i12_A D-alanine-D-alanine lig 98.5 3.1E-06 1.1E-10 84.6 17.1 98 6-126 139-238 (364)
23 1w96_A ACC, acetyl-coenzyme A 98.5 1.1E-06 3.8E-11 92.8 14.2 104 7-132 173-302 (554)
24 1vkz_A Phosphoribosylamine--gl 98.4 1.1E-06 3.9E-11 89.1 12.4 101 7-126 106-206 (412)
25 2dwc_A PH0318, 433AA long hypo 98.4 1.5E-06 5.1E-11 88.6 12.7 100 9-128 122-224 (433)
26 3n6r_A Propionyl-COA carboxyla 98.4 4.4E-07 1.5E-11 98.3 9.1 110 6-133 114-225 (681)
27 4dim_A Phosphoribosylglycinami 98.4 3.5E-06 1.2E-10 84.7 15.2 99 8-130 110-208 (403)
28 3u9t_A MCC alpha, methylcroton 98.4 6.1E-07 2.1E-11 97.0 8.9 109 7-133 141-251 (675)
29 2z04_A Phosphoribosylaminoimid 98.4 6.5E-07 2.2E-11 89.0 8.2 102 6-133 91-193 (365)
30 3eth_A Phosphoribosylaminoimid 98.3 3E-06 1E-10 84.8 12.4 94 9-132 81-177 (355)
31 1a9x_A Carbamoyl phosphate syn 98.3 5E-06 1.7E-10 94.4 15.3 97 9-127 676-772 (1073)
32 3tqt_A D-alanine--D-alanine li 98.3 4.3E-06 1.5E-10 84.1 13.2 96 7-125 140-238 (372)
33 4fu0_A D-alanine--D-alanine li 98.3 1.1E-05 3.9E-10 80.3 15.5 96 8-126 140-236 (357)
34 3ln6_A Glutathione biosynthesi 98.3 1E-06 3.6E-11 96.2 8.3 110 8-143 485-604 (750)
35 3k3p_A D-alanine--D-alanine li 98.3 7.5E-06 2.6E-10 82.7 13.9 96 7-125 161-259 (383)
36 1ulz_A Pyruvate carboxylase N- 98.3 2.6E-06 9E-11 87.2 10.5 108 8-133 115-224 (451)
37 3hbl_A Pyruvate carboxylase; T 98.3 2.2E-06 7.4E-11 97.7 10.3 109 7-133 118-228 (1150)
38 3orq_A N5-carboxyaminoimidazol 98.3 2.4E-06 8.2E-11 85.8 9.6 99 8-132 111-210 (377)
39 3se7_A VANA; alpha-beta struct 98.3 1.7E-05 5.9E-10 78.5 15.6 94 7-127 132-225 (346)
40 2w70_A Biotin carboxylase; lig 98.2 3.6E-06 1.2E-10 86.1 10.9 108 8-133 116-226 (449)
41 2vpq_A Acetyl-COA carboxylase; 98.2 3E-06 1E-10 86.7 10.1 108 8-133 115-224 (451)
42 3va7_A KLLA0E08119P; carboxyla 98.2 2E-06 6.9E-11 98.5 9.5 107 9-133 146-253 (1236)
43 1a9x_A Carbamoyl phosphate syn 98.2 4.2E-06 1.4E-10 95.0 11.8 104 7-132 128-231 (1073)
44 2xcl_A Phosphoribosylamine--gl 98.2 5.5E-06 1.9E-10 84.0 11.3 100 7-125 102-201 (422)
45 2dzd_A Pyruvate carboxylase; b 98.2 3.8E-06 1.3E-10 86.3 9.9 107 7-131 120-228 (461)
46 2yrx_A Phosphoribosylglycinami 98.2 6.3E-06 2.2E-10 84.5 11.3 101 7-126 123-223 (451)
47 2ip4_A PURD, phosphoribosylami 98.2 6.5E-06 2.2E-10 83.4 11.1 96 7-125 101-196 (417)
48 2qf7_A Pyruvate carboxylase pr 98.2 3.2E-06 1.1E-10 96.6 9.7 108 7-132 134-243 (1165)
49 2yw2_A Phosphoribosylamine--gl 98.2 7.1E-06 2.4E-10 83.2 11.2 100 7-125 102-201 (424)
50 2qk4_A Trifunctional purine bi 98.1 1E-05 3.6E-10 82.8 11.1 99 8-125 129-228 (452)
51 3vmm_A Alanine-anticapsin liga 98.1 7.6E-05 2.6E-09 77.3 17.1 95 6-114 138-234 (474)
52 1ehi_A LMDDL2, D-alanine:D-lac 98.1 2.1E-05 7.4E-10 78.8 12.6 96 7-126 135-234 (377)
53 3r5x_A D-alanine--D-alanine li 98.0 1.5E-05 5.3E-10 76.9 8.8 91 7-122 97-188 (307)
54 2i87_A D-alanine-D-alanine lig 97.9 6.1E-05 2.1E-09 74.9 10.7 97 7-126 129-230 (364)
55 3vot_A L-amino acid ligase, BL 97.8 3.7E-05 1.3E-09 78.0 9.1 100 9-125 114-214 (425)
56 3ln7_A Glutathione biosynthesi 97.8 3.6E-05 1.2E-09 84.1 9.4 92 9-125 491-587 (757)
57 1e4e_A Vancomycin/teicoplanin 97.8 5.7E-05 1.9E-09 74.5 10.0 94 7-127 132-225 (343)
58 3lwb_A D-alanine--D-alanine li 97.8 3.6E-05 1.2E-09 77.3 8.0 97 8-127 152-248 (373)
59 3ax6_A Phosphoribosylaminoimid 97.8 1.9E-05 6.4E-10 78.9 5.9 91 9-132 102-193 (380)
60 2pvp_A D-alanine-D-alanine lig 97.7 0.00019 6.6E-09 71.8 11.3 89 7-118 149-237 (367)
61 2fb9_A D-alanine:D-alanine lig 97.7 0.00019 6.6E-09 70.2 11.1 93 7-126 118-210 (322)
62 2pn1_A Carbamoylphosphate synt 97.7 9.3E-05 3.2E-09 72.0 8.7 93 7-130 114-209 (331)
63 1iow_A DD-ligase, DDLB, D-ALA\ 97.6 0.00015 5.3E-09 69.4 9.5 90 7-122 96-193 (306)
64 1uc8_A LYSX, lysine biosynthes 97.6 3.2E-05 1.1E-09 73.1 4.0 95 8-122 89-184 (280)
65 2r7k_A 5-formaminoimidazole-4- 97.4 0.00043 1.5E-08 69.2 8.7 91 9-126 126-216 (361)
66 3mwd_B ATP-citrate synthase; A 97.1 0.0019 6.5E-08 63.9 10.5 95 268-382 167-264 (334)
67 3dmy_A Protein FDRA; predicted 96.9 0.0032 1.1E-07 65.2 10.4 120 269-420 112-236 (480)
68 2r85_A PURP protein PF1517; AT 96.8 0.0053 1.8E-07 59.3 10.0 89 9-126 102-190 (334)
69 1oi7_A Succinyl-COA synthetase 96.7 0.0087 3E-07 57.8 10.9 124 269-417 144-285 (288)
70 2fp4_A Succinyl-COA ligase [GD 96.7 0.0037 1.3E-07 61.0 8.1 98 268-381 151-250 (305)
71 2yv2_A Succinyl-COA synthetase 96.6 0.0077 2.6E-07 58.5 9.7 125 269-417 151-293 (297)
72 2yv1_A Succinyl-COA ligase [AD 96.4 0.0083 2.8E-07 58.1 8.3 92 269-381 150-243 (294)
73 2nu8_A Succinyl-COA ligase [AD 96.2 0.011 3.7E-07 57.1 8.1 120 269-417 144-285 (288)
74 1z2n_X Inositol 1,3,4-trisphos 96.2 0.013 4.6E-07 56.4 8.7 87 9-122 100-188 (324)
75 1i7n_A Synapsin II; synapse, p 96.1 0.024 8.2E-07 55.4 9.9 90 11-125 121-211 (309)
76 4ffl_A PYLC; amino acid, biosy 95.6 0.028 9.5E-07 55.3 8.2 78 8-130 104-181 (363)
77 2p0a_A Synapsin-3, synapsin II 95.6 0.045 1.5E-06 54.2 9.6 90 11-125 138-228 (344)
78 3pff_A ATP-citrate synthase; p 95.5 0.056 1.9E-06 59.4 10.8 96 268-382 653-750 (829)
79 1pk8_A RAT synapsin I; ATP bin 95.3 0.061 2.1E-06 54.6 9.6 90 11-125 233-323 (422)
80 2csu_A 457AA long hypothetical 94.9 0.1 3.5E-06 53.5 10.3 93 270-382 150-242 (457)
81 1gsa_A Glutathione synthetase; 94.4 0.051 1.7E-06 51.5 5.9 78 28-122 134-214 (316)
82 2pbz_A Hypothetical protein; N 93.8 0.017 5.9E-07 56.6 1.4 85 11-132 102-187 (320)
83 2q7d_A Inositol-tetrakisphosph 93.3 0.14 4.8E-06 50.6 7.0 79 23-123 134-215 (346)
84 3df7_A Putative ATP-grAsp supe 89.2 0.6 2.1E-05 44.8 6.6 47 50-125 132-178 (305)
85 2yxb_A Coenzyme B12-dependent 86.1 3.7 0.00013 35.7 9.2 106 286-420 39-144 (161)
86 2ehh_A DHDPS, dihydrodipicolin 80.2 14 0.00049 35.0 11.5 107 300-421 11-124 (294)
87 2yxg_A DHDPS, dihydrodipicolin 79.2 11 0.00039 35.7 10.4 108 299-421 10-124 (289)
88 3l21_A DHDPS, dihydrodipicolin 77.9 14 0.00049 35.3 10.7 109 299-421 24-139 (304)
89 1ccw_A Protein (glutamate muta 77.6 12 0.00042 31.2 9.1 104 287-419 25-134 (137)
90 3qfe_A Putative dihydrodipicol 76.3 16 0.00054 35.3 10.6 111 300-421 20-137 (318)
91 3flu_A DHDPS, dihydrodipicolin 75.1 22 0.00074 33.8 11.1 108 300-421 17-131 (297)
92 3qze_A DHDPS, dihydrodipicolin 74.7 16 0.00056 35.1 10.2 109 299-421 32-147 (314)
93 1o5k_A DHDPS, dihydrodipicolin 74.7 15 0.0005 35.2 9.9 108 299-421 22-136 (306)
94 3tak_A DHDPS, dihydrodipicolin 74.5 16 0.00056 34.5 10.1 108 300-421 11-125 (291)
95 3si9_A DHDPS, dihydrodipicolin 74.0 16 0.00056 35.1 10.0 108 300-421 32-146 (315)
96 4dpp_A DHDPS 2, dihydrodipicol 74.0 14 0.00047 36.5 9.6 123 284-420 53-182 (360)
97 3na8_A Putative dihydrodipicol 72.3 18 0.0006 34.9 9.8 109 299-421 33-148 (315)
98 3fkr_A L-2-keto-3-deoxyarabona 71.7 23 0.0008 33.9 10.5 109 300-421 18-135 (309)
99 1xky_A Dihydrodipicolinate syn 71.6 29 0.00099 33.0 11.1 108 300-421 22-136 (301)
100 3cpr_A Dihydrodipicolinate syn 71.2 32 0.0011 32.8 11.3 108 300-421 26-140 (304)
101 3s5o_A 4-hydroxy-2-oxoglutarat 71.1 17 0.00059 34.7 9.4 111 299-421 23-140 (307)
102 3h5d_A DHDPS, dihydrodipicolin 70.0 18 0.00061 34.8 9.2 109 299-421 16-132 (311)
103 2r8w_A AGR_C_1641P; APC7498, d 70.0 25 0.00086 34.1 10.4 110 299-421 43-158 (332)
104 1f6k_A N-acetylneuraminate lya 69.9 38 0.0013 32.0 11.5 109 300-421 13-128 (293)
105 3rst_A Signal peptide peptidas 68.7 9.4 0.00032 35.2 6.7 66 307-385 28-95 (240)
106 2ojp_A DHDPS, dihydrodipicolin 68.4 32 0.0011 32.5 10.6 107 301-421 12-125 (292)
107 2wkj_A N-acetylneuraminate lya 68.4 33 0.0011 32.7 10.7 108 300-421 21-135 (303)
108 3m5v_A DHDPS, dihydrodipicolin 67.5 26 0.00088 33.4 9.7 104 305-421 22-132 (301)
109 3zxn_A RSBS, anti-sigma-factor 67.1 49 0.0017 26.8 10.9 103 302-421 16-120 (123)
110 2v9d_A YAGE; dihydrodipicolini 64.8 35 0.0012 33.2 10.2 108 300-421 41-155 (343)
111 3b4u_A Dihydrodipicolinate syn 62.4 45 0.0015 31.5 10.4 108 301-421 14-128 (294)
112 3e96_A Dihydrodipicolinate syn 61.8 37 0.0013 32.5 9.7 108 299-421 20-135 (316)
113 3dz1_A Dihydrodipicolinate syn 61.5 42 0.0014 32.1 10.0 107 300-421 18-130 (313)
114 2rfg_A Dihydrodipicolinate syn 59.9 26 0.00089 33.3 8.2 104 305-421 15-124 (297)
115 3d0c_A Dihydrodipicolinate syn 59.7 37 0.0013 32.5 9.3 109 299-421 20-135 (314)
116 3eb2_A Putative dihydrodipicol 59.2 14 0.00048 35.3 6.1 109 300-421 14-128 (300)
117 3a5f_A Dihydrodipicolinate syn 57.3 38 0.0013 32.0 8.8 106 301-421 13-125 (291)
118 3daq_A DHDPS, dihydrodipicolin 56.0 58 0.002 30.7 9.9 106 301-421 14-126 (292)
119 2vc6_A MOSA, dihydrodipicolina 56.0 35 0.0012 32.2 8.3 103 305-421 15-124 (292)
120 2cby_A ATP-dependent CLP prote 47.9 27 0.00093 31.3 5.8 69 302-384 30-100 (208)
121 3bf0_A Protease 4; bacterial, 46.7 17 0.0006 38.1 4.9 65 306-384 320-386 (593)
122 2r91_A 2-keto-3-deoxy-(6-phosp 45.8 1.1E+02 0.0037 28.6 10.0 105 300-421 9-120 (286)
123 2xij_A Methylmalonyl-COA mutas 45.6 55 0.0019 35.5 8.6 93 302-420 636-730 (762)
124 1yg6_A ATP-dependent CLP prote 45.4 31 0.001 30.5 5.6 58 310-384 40-99 (193)
125 2lnd_A De novo designed protei 42.4 84 0.0029 24.1 6.7 52 368-421 50-101 (112)
126 2kln_A Probable sulphate-trans 42.1 1.3E+02 0.0045 24.0 9.1 86 309-416 29-122 (130)
127 2hmc_A AGR_L_411P, dihydrodipi 40.2 1.3E+02 0.0044 29.1 9.7 105 300-420 36-147 (344)
128 4a26_A Putative C-1-tetrahydro 37.7 2.3E+02 0.0079 27.0 10.8 90 299-403 69-196 (300)
129 3nq4_A 6,7-dimethyl-8-ribityll 37.5 2E+02 0.0067 24.7 11.5 113 281-420 30-149 (156)
130 3t7a_A Inositol pyrophosphate 37.1 15 0.00051 35.7 2.2 45 9-61 99-154 (330)
131 2i0f_A 6,7-dimethyl-8-ribityll 36.6 1.4E+02 0.0049 25.7 8.3 120 271-420 14-150 (157)
132 2f6i_A ATP-dependent CLP prote 36.4 56 0.0019 29.5 6.0 65 302-381 42-108 (215)
133 3ezx_A MMCP 1, monomethylamine 36.1 2.3E+02 0.008 25.2 10.2 102 286-418 113-214 (215)
134 3mvn_A UDP-N-acetylmuramate:L- 35.3 1.9E+02 0.0066 24.2 9.1 96 302-420 41-137 (163)
135 1b0a_A Protein (fold bifunctio 34.5 3E+02 0.01 26.0 11.5 99 300-413 66-201 (288)
136 3viv_A 441AA long hypothetical 34.2 49 0.0017 30.3 5.2 50 327-389 36-90 (230)
137 1xrs_B D-lysine 5,6-aminomutas 33.0 2.2E+02 0.0075 26.5 9.6 94 302-420 161-257 (262)
138 1y80_A Predicted cobalamin bin 33.0 2.5E+02 0.0084 24.5 11.0 92 300-419 118-209 (210)
139 3l07_A Bifunctional protein fo 32.9 3.2E+02 0.011 25.8 10.8 90 299-403 66-192 (285)
140 1w3i_A EDA, 2-keto-3-deoxy glu 32.2 2.9E+02 0.0098 25.8 10.5 105 301-421 10-121 (293)
141 1req_A Methylmalonyl-COA mutas 29.9 1.2E+02 0.004 32.8 7.9 95 302-420 628-722 (727)
142 2nuw_A 2-keto-3-deoxygluconate 29.8 2.4E+02 0.0081 26.3 9.5 105 301-421 10-121 (288)
143 1hqk_A 6,7-dimethyl-8-ribityll 28.9 2.2E+02 0.0074 24.4 8.1 124 270-420 13-148 (154)
144 3cf4_G Acetyl-COA decarboxylas 28.8 52 0.0018 28.3 4.2 33 369-401 35-67 (170)
145 1hmj_A RPB5, protein (subunit 28.1 56 0.0019 24.9 3.7 29 5-38 14-42 (78)
146 3dbi_A Sugar-binding transcrip 27.8 2.4E+02 0.0083 25.9 9.2 90 270-379 182-280 (338)
147 1c2y_A Protein (lumazine synth 27.7 2.9E+02 0.0099 23.7 11.2 125 270-420 14-148 (156)
148 4fn4_A Short chain dehydrogena 27.3 2.8E+02 0.0095 25.4 9.3 89 264-375 1-90 (254)
149 3t6o_A Sulfate transporter/ant 27.2 2E+02 0.007 22.5 7.4 74 328-415 46-119 (121)
150 3zwt_A Dihydroorotate dehydrog 26.8 1.8E+02 0.0061 28.4 8.2 69 301-379 150-230 (367)
151 1rvv_A Riboflavin synthase; tr 26.7 2.4E+02 0.0082 24.1 8.0 124 270-420 13-148 (154)
152 3tml_A 2-dehydro-3-deoxyphosph 26.4 1.1E+02 0.0037 29.1 6.3 25 376-400 68-92 (288)
153 3qk7_A Transcriptional regulat 26.2 2.8E+02 0.0095 24.9 9.1 83 269-371 126-214 (294)
154 4dgf_A Sulfate transporter sul 25.7 2.5E+02 0.0084 22.5 7.8 78 330-422 52-132 (135)
155 3i44_A Aldehyde dehydrogenase; 25.7 3.3E+02 0.011 27.5 10.3 38 327-380 238-275 (497)
156 1tg6_A Putative ATP-dependent 25.4 1.2E+02 0.0041 28.6 6.4 70 301-384 84-155 (277)
157 4hyl_A Stage II sporulation pr 25.3 1.9E+02 0.0066 22.2 6.9 69 332-415 44-112 (117)
158 1kz1_A 6,7-dimethyl-8-ribityll 25.3 3.1E+02 0.011 23.5 8.5 125 270-421 18-156 (159)
159 1y7o_A ATP-dependent CLP prote 25.3 1.3E+02 0.0046 26.9 6.5 71 304-388 50-122 (218)
160 2i2x_B MTAC, methyltransferase 25.1 2.3E+02 0.0078 25.9 8.3 100 286-420 144-243 (258)
161 1p9l_A Dihydrodipicolinate red 23.3 4.2E+02 0.014 24.0 9.8 50 369-422 69-119 (245)
162 1f76_A Dihydroorotate dehydrog 22.4 3.1E+02 0.011 25.8 9.0 78 310-400 152-242 (336)
163 3uug_A Multiple sugar-binding 22.1 2.9E+02 0.0099 25.1 8.5 95 306-420 181-276 (330)
164 3k4h_A Putative transcriptiona 21.7 4.1E+02 0.014 23.4 9.3 17 276-292 113-129 (292)
165 3u4j_A NAD-dependent aldehyde 21.6 4.5E+02 0.015 26.7 10.4 38 327-380 238-275 (528)
166 3bul_A Methionine synthase; tr 21.3 5.1E+02 0.017 26.9 10.7 97 300-420 128-224 (579)
167 1eik_A RNA polymerase subunit 21.2 66 0.0023 24.4 2.9 28 5-37 16-43 (77)
168 4e4g_A Methylmalonate-semialde 21.0 6.2E+02 0.021 25.6 11.3 71 282-380 205-275 (521)
169 4hqo_A Sporozoite surface prot 20.9 3.5E+02 0.012 24.3 8.7 73 305-389 101-175 (266)
170 1ujp_A Tryptophan synthase alp 20.8 2.4E+02 0.0081 26.2 7.5 29 304-338 23-51 (271)
171 3h75_A Periplasmic sugar-bindi 20.7 4.7E+02 0.016 24.0 9.8 91 306-420 185-278 (350)
172 2pcq_A Putative dihydrodipicol 20.7 1.7E+02 0.0059 27.2 6.5 101 301-419 9-116 (283)
173 1th8_B Anti-sigma F factor ant 20.7 2.8E+02 0.0096 21.0 8.2 71 330-415 43-113 (116)
174 3llo_A Prestin; STAS domain, c 20.2 2.7E+02 0.0094 22.3 7.0 71 328-415 62-138 (143)
175 3rot_A ABC sugar transporter, 20.1 3.7E+02 0.013 24.0 8.6 100 273-391 107-210 (297)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=1.8e-95 Score=746.64 Aligned_cols=414 Identities=42% Similarity=0.755 Sum_probs=372.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCC-CHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHH
Q 014514 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST-DFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA 79 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~-~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~e 79 (423)
||++.++|||+|+||++|+.|++.. +..+++.+++++ +++||.++++++|++|||||+|+++|||||+|||+++.|++
T Consensus 1 m~~k~i~Ey~~K~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~e 79 (425)
T 3mwd_A 1 MSAKAISEQTGKELLYKFICTTSAI-QNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD 79 (425)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCB-CSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred CCchhHhHHHHHHHHHHhccccCCc-cCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHH
Confidence 8999999999999999995444321 233346566555 78999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHhccchhccCCCCCceeeEEeeecCC--CceEEEEEEEcCCCceEEeccCCccccccccCcEEEEecCcccC
Q 014514 80 QVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKH 157 (423)
Q Consensus 80 e~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~--~~Elylgi~~D~~gp~il~~~~GGv~vE~~~d~~~~~pi~~~~~ 157 (423)
|+++++++|+++..+++.+.+.+++||||+|+++ ++|+|+|+++||.||+|+||++||++||+++|+..++|++|..+
T Consensus 80 ev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~ 159 (425)
T 3mwd_A 80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK 159 (425)
T ss_dssp HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCC
T ss_pred HHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCccc
Confidence 9999999999988754345568999999999986 48999999999999999999999999999999877778888777
Q ss_pred CCHHHH-HHHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCCeEEEeeEEEeCCCccccCccccccccCC
Q 014514 158 MTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFP 236 (423)
Q Consensus 158 l~~~~~-~~ll~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~g~~valDaki~ldd~a~~r~~~~~~~~~~~ 236 (423)
+....+ ++++.++++.+++++++++.+||++|.++|++++|||||++.+++++|+|||+.+||||.||||++|..+++|
T Consensus 160 l~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~ 239 (425)
T 3mwd_A 160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFP 239 (425)
T ss_dssp CCHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCC
T ss_pred cCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhcc
Confidence 877777 6778889889999999999999999999999999999999943459999999999999999999999989999
Q ss_pred CCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCC--CCCceeeccCCCCHHHHH
Q 014514 237 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVL 314 (423)
Q Consensus 237 ~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg--~~aN~lDlgG~a~~~~~~ 314 (423)
.+|+++.+|+|.++.++|+++++++++|||+|+||||||+||||++|+|||+|..+ || +||||+|+||+|++++++
T Consensus 240 ~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v~ 317 (425)
T 3mwd_A 240 PPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTY 317 (425)
T ss_dssp CCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHHH
T ss_pred ccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHHH
Confidence 88999999999988888888888999999999999999999999999999999995 78 799999999999999999
Q ss_pred HHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccc
Q 014514 315 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 394 (423)
Q Consensus 315 ~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~ 394 (423)
++++.+++++++||+++++|||+||||++|++||+||+||++|+++.+.++...++|||||++|||+++|+++|++.++.
T Consensus 318 ~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~ 397 (425)
T 3mwd_A 318 DYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKT 397 (425)
T ss_dssp HHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcc
Confidence 99888888888899999999999999999999999999999999997543223589999999999999999999997777
Q ss_pred cCCceeecCCCCCHHHHHHHHHH
Q 014514 395 LGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 395 ~gip~~~~~~~~~~~~av~~~~~ 417 (423)
.|+|+|+||++++|++.|++|+.
T Consensus 398 lgip~~~~gpe~~~~~i~~~a~~ 420 (425)
T 3mwd_A 398 TGIPIHVFGTETHMTAIVGMALG 420 (425)
T ss_dssp HTCCEEEECTTSCTTHHHHHHTT
T ss_pred cCCceEEeCccchHHHHHHHHhc
Confidence 88999999999999999999974
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-91 Score=763.71 Aligned_cols=415 Identities=42% Similarity=0.751 Sum_probs=376.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCC-CHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHH
Q 014514 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST-DFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA 79 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~-~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~e 79 (423)
||++.++|||+|+||++|+.++++... .+++.+++++ +++||.++++|++++|||||+|+++|||||+|||+++.|++
T Consensus 1 ms~k~i~Ey~aK~ll~~~~~~~~~~~~-~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~e 79 (829)
T 3pff_A 1 MSAKAISEQTGKELLYKFICTTSAIQN-RFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD 79 (829)
T ss_dssp -CEEEECHHHHHHHHHHHCCCSSCBCS-TTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred CCchhHhHHHHHHHHHHhCcccccccc-CCceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHH
Confidence 899999999999999999444333222 3355565555 78999999999976899999999999999999999999999
Q ss_pred HHHHHHHHHhccchhccCCCCCceeeEEeeecCC--CceEEEEEEEcCCCceEEeccCCccccccccCcEEEEecCcccC
Q 014514 80 QVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKH 157 (423)
Q Consensus 80 e~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~--~~Elylgi~~D~~gp~il~~~~GGv~vE~~~d~~~~~pi~~~~~ 157 (423)
|+++++++|+++..+++.+.+.+++||||+|+++ ++|||+|+++||.+|+||||.+||++||+++|+++++||||..+
T Consensus 80 Ea~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s~eGGvdIE~vad~~~~~~I~p~~g 159 (829)
T 3pff_A 80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK 159 (829)
T ss_dssp HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCCHHHHSEEEEEETTCC
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEECCCCcchhhhhhhceEEecCCccc
Confidence 9999999999988753345568999999999986 58999999999999999999999999999999887889999888
Q ss_pred CCHHHH-HHHHhCCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCCeEEEeeEEEeCCCccccCccccccccCC
Q 014514 158 MTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFP 236 (423)
Q Consensus 158 l~~~~~-~~ll~g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v~~g~~valDaki~ldd~a~~r~~~~~~~~~~~ 236 (423)
+...++ ++++.++++.++++++++|.+||++|.++|++++|||||++.+++++||||||.+||||.|||+++|..+++|
T Consensus 160 l~~~~a~~~ll~g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dgv~ALDAKi~lDDnA~fR~~~~~~~~~~~ 239 (829)
T 3pff_A 160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFP 239 (829)
T ss_dssp CCHHHHHHTTTTTSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCCEEEEEGGGHHHHHHHHCSCCCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCceEEEeceeeeccchhhhCchhhhhhhcc
Confidence 999988 7788889999999999999999999999999999999999943459999999999999999999999988999
Q ss_pred CCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCC--CCCceeeccCCCCHHHHH
Q 014514 237 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVL 314 (423)
Q Consensus 237 ~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg--~~aN~lDlgG~a~~~~~~ 314 (423)
.+|+++.+|+|.++.++|++++++++||||+|+||||||+||||++|+|||+|..+ || +||||+|+||+|+.++++
T Consensus 240 ~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~--Gg~~~pANFlDvGGga~~e~v~ 317 (829)
T 3pff_A 240 PPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTY 317 (829)
T ss_dssp CCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCTTTBCEEEEEESCCCHHHHH
T ss_pred ccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHc--CCCCCCceeEEecCCCCHHHHH
Confidence 88999999999988888889999999999999999999999999999999999996 77 799999999999999999
Q ss_pred HHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccc
Q 014514 315 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 394 (423)
Q Consensus 315 ~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~ 394 (423)
++++.+++++++||+++++||||||||++|++||+||+||++|+++...++...++|||||++|||+++|+++|++.+++
T Consensus 318 ~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~~ 397 (829)
T 3pff_A 318 DYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKT 397 (829)
T ss_dssp HHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCccc
Confidence 99888888888899999999999999999999999999999999997543334689999999999999999999998888
Q ss_pred cCCceeecCCCCCHHHHHHHHHHH
Q 014514 395 LGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 395 ~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
.|+|+++||++++|++.|++|++.
T Consensus 398 lgl~i~v~g~e~~mt~iv~~a~~~ 421 (829)
T 3pff_A 398 TGIPIHVFGTETHMTAIVGMALGH 421 (829)
T ss_dssp HCCCEEEECTTSCTTHHHHHHHTS
T ss_pred cCCcEEEeCCcccHHHHHHHHhcc
Confidence 899999999999999999999864
No 3
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=2.1e-81 Score=639.64 Aligned_cols=374 Identities=24% Similarity=0.357 Sum_probs=340.3
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCC-cEEEeeccccCccCCc-------CeeEEe
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSS-RLVVKPDMLFGKRGKS-------GLVALN 75 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~-pvVvK~qv~~g~r~k~-------GGV~l~ 75 (423)
|+|+||++|++|++| | ||++++.+++++ +|+.+++.++| + |||+|||+++|||||. |||+++
T Consensus 1 m~l~E~~aK~lL~~~-----G--Ipvp~~~~~~s~--~ea~~~a~~lg-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~ 70 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDN-----G--VKVQRFFVADTA--NEALEAAKRLN-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLT 70 (395)
T ss_dssp CBCCHHHHHHHHHHT-----T--CCCCCEEEESSH--HHHHHHHHHHT-CSSEEEEECCSSSCGGGCEETTSCBCSEEEE
T ss_pred CCCCHHHHHHHHHHC-----C--cCCCCeEEECCH--HHHHHHHHHcC-CCcEEEEEeeccCCCccCccccCCcCCEEEE
Confidence 789999999999999 8 566699998876 89999999997 7 8999999999999998 999999
Q ss_pred CCHHHHHHHHHHHhccchhc--cCCCC-CceeeEEeeecCCCceEEEEEEEcCC-C-ceEEeccCCccccccc----cCc
Q 014514 76 LDLAQVAEFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDK 146 (423)
Q Consensus 76 ~~~ee~~~a~~~~~~~~~~~--~~~~~-~v~~vLVe~~v~~~~Elylgi~~D~~-g-p~il~~~~GGv~vE~~----~d~ 146 (423)
.|++|+++++++++++.+.+ +++.+ .++++|||+|+++++|+|+++..|+. + |++++|.+||++||.+ +|+
T Consensus 71 ~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~ 150 (395)
T 2fp4_B 71 KDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPEL 150 (395)
T ss_dssp SCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGG
T ss_pred CCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCce
Confidence 99999999999999875311 22233 57899999999999999999999998 5 9999999999999998 899
Q ss_pred EEEEecCcccCCCHHHHHHHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCCCcc
Q 014514 147 VKTIFLPTEKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAA 223 (423)
Q Consensus 147 ~~~~pi~~~~~l~~~~~~~ll~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd~a~ 223 (423)
++++|++|..++++.++++++. |+++.+.+++++++.+||++|.++|++++|||||++ .+|+++|+|||+.+||||.
T Consensus 151 i~~~~idp~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~ 230 (395)
T 2fp4_B 151 IFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAE 230 (395)
T ss_dssp CEEEECCTTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGG
T ss_pred EEEEecCCCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEeccccc
Confidence 9999999999999999999987 677789999999999999999999999999999999 6778999999999999999
Q ss_pred ccCccccccccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceee
Q 014514 224 FKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAE 303 (423)
Q Consensus 224 ~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lD 303 (423)
||||+++. ++++ ++.+|.|. ++++++++|++|+||||||+||||++|+|+|+|..+ ||+||||+|
T Consensus 231 ~r~~~~~~-~~d~----~~~~~~e~--------~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~--Gg~paNflD 295 (395)
T 2fp4_B 231 FRQKDIFA-MDDK----SENEPIEN--------EAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLN--GGKPANFLD 295 (395)
T ss_dssp GGCHHHHT-TCCC----TTSCHHHH--------HHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEE
T ss_pred ccCcchhh-hcCC----CccChhhh--------hHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcEE
Confidence 99999643 5555 55566654 577889999999999999999999999999999995 899999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 014514 304 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 383 (423)
Q Consensus 304 lgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~ 383 (423)
+||+|++++|+++++++++ ||+++++|||+||||++|++|| +||++++++.+ .++|||+|++|+|+++
T Consensus 296 vgG~a~~e~~~~al~~il~----d~~v~~ilvni~ggi~~~d~vA---~gii~a~~~~~-----~~~Pivvrl~G~n~~~ 363 (395)
T 2fp4_B 296 LGGGVKESQVYQAFKLLTA----DPKVEAILVNIFGGIVNCAIIA---NGITKACRELE-----LKVPLVVRLEGTNVHE 363 (395)
T ss_dssp CCSSCCHHHHHHHHHHHHH----CTTCCEEEEEEEESSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEEETTHHH
T ss_pred ECCCCCHHHHHHHHHHHhC----CCCCCEEEEEecCCccCcHHHH---HHHHHHHHhcC-----CCCeEEEEcCCCCHHH
Confidence 9999999999999999999 9999999999999999999999 99999999874 4799999999999999
Q ss_pred HHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 384 GLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 384 a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++++|++ +|+|+|.+ +||++|++++++++++
T Consensus 364 g~~~L~~----~gl~~~~~---~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 364 AQNILTN----SGLPITSA---VDLEDAAKKAVASVTK 394 (395)
T ss_dssp HHHHHHH----TCSCCEEC---SSHHHHHHHHHHTTC-
T ss_pred HHHHHHH----CCCceEeC---CCHHHHHHHHHHHhhc
Confidence 9999998 89999965 7999999999999865
No 4
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=4.2e-81 Score=636.63 Aligned_cols=374 Identities=23% Similarity=0.324 Sum_probs=341.6
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCc-EEEeeccccCccCCcCeeEEeCCHHHHH
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~p-vVvK~qv~~g~r~k~GGV~l~~~~ee~~ 82 (423)
|+|+||++|++|++| | ||++++.+++++ +|+.++++++| +| ||||||++.|||||.|||+++.|++|++
T Consensus 1 m~l~E~~aK~lL~~~-----G--Ipvp~~~~~~s~--eea~~aa~~lG-~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~ 70 (388)
T 2nu8_B 1 MNLHEYQAKQLFARY-----G--LPAPVGYACTTP--REAEEAASKIG-AGPWVVKCQVHAGGRGKAGGVKVVNSKEDIR 70 (388)
T ss_dssp CBCCHHHHHHHHHHT-----T--CCCCCEEEESSH--HHHHHHHHHHC-SSCEEEEECCSSSCTTTTTCEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHC-----C--cCCCCeeEECCH--HHHHHHHHHhC-CCeEEEEEecCCCCCCccCCEEEECCHHHHH
Confidence 789999999999999 8 566699998876 89999999997 89 9999999999999999999999999999
Q ss_pred HHHHHHhccchhc--cCCCC-CceeeEEeeecCCCceEEEEEEEcCC-C-ceEEeccCCcccccccc----CcEEEEecC
Q 014514 83 EFVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEENW----DKVKTIFLP 153 (423)
Q Consensus 83 ~a~~~~~~~~~~~--~~~~~-~v~~vLVe~~v~~~~Elylgi~~D~~-g-p~il~~~~GGv~vE~~~----d~~~~~pi~ 153 (423)
+++++++++...+ +++.+ .++++|||+|+++++|+|+++..|+. + |++++|.+||++||.+. |++++++++
T Consensus 71 ~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~ 150 (388)
T 2nu8_B 71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD 150 (388)
T ss_dssp HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB
T ss_pred HHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecC
Confidence 9999999864421 23333 57899999999999999999999998 5 99999999999999864 788898999
Q ss_pred cccCCCHHHHHHHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCCCccccCcccc
Q 014514 154 TEKHMTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKW 230 (423)
Q Consensus 154 ~~~~l~~~~~~~ll~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd~a~~r~~~~~ 230 (423)
|..++++.++++++. |+++.+++++++++.+||++|.++|++++|||||++ .+|+++|+|||+.+||||.||||+ |
T Consensus 151 P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~-~ 229 (388)
T 2nu8_B 151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-L 229 (388)
T ss_dssp TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-H
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcc-h
Confidence 988999999999987 577889999999999999999999999999999999 677899999999999999999998 7
Q ss_pred ccccCCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH
Q 014514 231 ANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE 310 (423)
Q Consensus 231 ~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~ 310 (423)
..++++ ++.+|+|. .+++++++|++|+||||||+||||++|+|+|++..+ ||+||||+|+||+|+.
T Consensus 230 ~~~~~~----~~~~~~e~--------~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~--Gg~~aNflD~gG~a~~ 295 (388)
T 2nu8_B 230 REMRDQ----SQEDPREA--------QAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLH--GGEPANFLDVGGGATK 295 (388)
T ss_dssp HHHCCG----GGSCHHHH--------HHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSCCCH
T ss_pred hhhcCc----cccChhHH--------HHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHc--CCCcCceeEecCCCCH
Confidence 778876 66777766 466788999999999999999999999999999995 8899999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHh
Q 014514 311 EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRA 390 (423)
Q Consensus 311 ~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~ 390 (423)
++++++++++++ ||++|++|||+||||++|++|| +||++++++.. .++|||+|++|+|+++++++|++
T Consensus 296 ~~~~~~~~~il~----d~~v~~ilvni~ggi~~~~~vA---~gii~a~~~~~-----~~~pivvrl~G~n~~~g~~~l~~ 363 (388)
T 2nu8_B 296 ERVTEAFKIILS----DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVAEVG-----VNVPVVVRLEGNNAELGAKKLAD 363 (388)
T ss_dssp HHHHHHHHHHHT----STTCCEEEEEEESCSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEESTTHHHHHHHHHT
T ss_pred HHHHHHHHHHhc----CCCCCEEEEEecCCcCCchHHH---HHHHHHHHhcC-----CCCeEEEEeCCCCHHHHHHHHHH
Confidence 999999999998 9999999999999999999999 99999999864 47999999999999999999998
Q ss_pred hccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 391 LGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 391 ~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+|+|+|. ++||++|++++++++++
T Consensus 364 ----~g~~~~~---~~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 364 ----SGLNIIA---AKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp ----TCSSEEE---CSSHHHHHHHHHHHTTT
T ss_pred ----CCCceec---CCCHHHHHHHHHHHhhc
Confidence 8999994 48999999999999864
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=1.6e-80 Score=633.82 Aligned_cols=368 Identities=23% Similarity=0.347 Sum_probs=338.0
Q ss_pred CCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 4 ~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
|+|+|||+|++|++| | ||++++.+++++ +|+.++++++| +|||||+|++.+||||+|||+++.|++|+++
T Consensus 1 m~L~E~~aK~lL~~~-----G--Ipvp~~~~~~s~--eea~~aa~~lG-~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~ 70 (397)
T 3ufx_B 1 MNLHEYQAKEILARY-----G--VPVPPGKVAYTP--EEAKRIAEEFG-KRVVIKAQVHVGGRGKAGGVKLADTPQEAYE 70 (397)
T ss_dssp CBCCHHHHHHHHHHT-----T--CCCCCEEEESSH--HHHHHHHHHHT-SCEEEEECCSSSCTTTTTCEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHC-----C--CCCCCeEEECCH--HHHHHHHHHcC-CCEEEEEccccCCCCccceEEEeCCHHHHHH
Confidence 789999999999999 8 566699999887 89999999997 9999999999999999999999999999999
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-C-ceEEeccCCccccccc----cCcEEEEecCcccC
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-G-CTISFSECGGIEIEEN----WDKVKTIFLPTEKH 157 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-g-p~il~~~~GGv~vE~~----~d~~~~~pi~~~~~ 157 (423)
++++++++... + ..++++|||+|+++++|+|+|++.||. + |+|+||++||++||++ +|++++++++|..+
T Consensus 71 a~~~~~~~~~~--g--~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~~ 146 (397)
T 3ufx_B 71 KAQAILGMNIK--G--LTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKG 146 (397)
T ss_dssp HHHHHTTCEET--T--EECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTTB
T ss_pred HHHHhhhhhcc--C--CccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCCC
Confidence 99999986542 2 357899999999999999999999998 6 9999998999999985 56899999998888
Q ss_pred CCHHHHHHHHh--CCChhHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCCeEEEeeEEEeCCCccccCcccccccc
Q 014514 158 MTLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIE 234 (423)
Q Consensus 158 l~~~~~~~ll~--g~~~~~~~~l~~~l~~L~~l~~~~d~~~lEINPL~v-~~g~~valDaki~ldd~a~~r~~~~~~~~~ 234 (423)
+++.++++|+. |+++. ++++++++.+||++|.+++.+++|||||++ .+|+++|+||||++||||.||||+ |..++
T Consensus 147 l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~~ 224 (397)
T 3ufx_B 147 FRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPD-LAELR 224 (397)
T ss_dssp CCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHH-HHTTH
T ss_pred CCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchh-hhhhc
Confidence 99999999987 67777 999999999999999999999999999999 677899999999999999999998 77788
Q ss_pred CCCCCCCCCCchhhcccccchhhhccCCcEEecCCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHH
Q 014514 235 FPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVL 314 (423)
Q Consensus 235 ~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~ 314 (423)
++ ++.+|.|. +++++++|||+|+||||||+||+|++|+|+|++..+ |++|+||+|+||++++++|+
T Consensus 225 ~~----~~~~~~e~--------~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~--G~~~aN~lD~gG~a~~e~~~ 290 (397)
T 3ufx_B 225 EV----EAEHPLEV--------EASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRV--GGKPANFLDIGGGAKADVVY 290 (397)
T ss_dssp HH----HCSSHHHH--------HHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSCCCHHHHH
T ss_pred Cc----ccCCHhHH--------HHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHc--CCCcCCcEecCCCCCHHHHH
Confidence 77 67777765 677899999999999999999999999999999995 89999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccc
Q 014514 315 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 394 (423)
Q Consensus 315 ~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~ 394 (423)
++++++++ ||++|++|||+|||+++|++|| ++|++++++.+ .++|||+|+.|++.++++++|++
T Consensus 291 ~al~~~l~----d~~v~~ilv~i~ggi~~~~~vA---~~i~~a~~~~~-----~~kPvvv~~~G~~~~~~~~~l~~---- 354 (397)
T 3ufx_B 291 NALKVVLK----DPDVKGVFINIFGGITRADEVA---KGVIRALEEGL-----LTKPVVMRVAGTAEEEAKKLLEG---- 354 (397)
T ss_dssp HHHHHHHT----CTTCCEEEEEEEEEEEESHHHH---HHHHHHHTTTC-----CCSCEEEEEEEECHHHHHHHTTT----
T ss_pred HHHHHHHc----CCCCCEEEEECCCCCCCHHHHH---HHHHHHHHhhC-----CCCcEEEEccCCCHHHHHHHHHh----
Confidence 99999998 9999999999999999999999 99999997763 47999999888899999999998
Q ss_pred cCCceeecCCCCCHHHHHHHHHHHhHhc
Q 014514 395 LGIPLEVYGPEATMTGICKQAIDCIMSA 422 (423)
Q Consensus 395 ~gip~~~~~~~~~~~~av~~~~~~~~~~ 422 (423)
+|||.| +||++|+++++++++.+
T Consensus 355 ~gip~~-----~~~e~Aa~~~~~l~~~a 377 (397)
T 3ufx_B 355 KPVYMY-----PTSIEAAKVTVAMKGGA 377 (397)
T ss_dssp SSEEEC-----SSHHHHHHHHHHSCCSC
T ss_pred CCCccc-----CCHHHHHHHHHHHHHHh
Confidence 899987 89999999999988754
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.4e-34 Score=270.99 Aligned_cols=204 Identities=20% Similarity=0.232 Sum_probs=173.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEe-CCH
Q 014514 1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALN-LDL 78 (423)
Q Consensus 1 ~~~~~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~-~~~ 78 (423)
++|+.|+|+++|++|++| | ||++++.++++. +|+.+++..+| ||||+||+.. .+||++.|||.++ .|+
T Consensus 15 ~~~~~l~k~~~k~ll~~~-----G--Ip~p~~~~~~~~--~ea~~~a~~lg-~PvvvKp~~~~~~~r~~~gGv~~~v~~~ 84 (238)
T 1wr2_A 15 QGRTAMVEYEAKQVLKAY-----G--LPVPEEKLAKTL--DEALEYAKEIG-YPVVLKLMSPQILHKSDAKVVMLNIKNE 84 (238)
T ss_dssp TTCCEECHHHHHHHHHTT-----T--CCCCCCEEESSH--HHHHHHHHHHC-SSEEEEEECTTCCCHHHHTCEEEEECSH
T ss_pred cCcCCCCHHHHHHHHHHc-----C--cCCCCeEEeCCH--HHHHHHHHHhC-CCEEEEEccCCCCcCCccCCEEEeCCCH
Confidence 467889999999999999 8 566688888776 88888888896 8999999997 8999999999995 899
Q ss_pred HHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-CceEEeccCCccccccccCcEEEEecCcccC
Q 014514 79 AQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISFSECGGIEIEENWDKVKTIFLPTEKH 157 (423)
Q Consensus 79 ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~~~~GGv~vE~~~d~~~~~pi~~~~~ 157 (423)
+|+.+++++++.....+ .+...+.++|||+|+++++|+|+++..|+. ||++++| .||+++|.+.|..+.+ +|
T Consensus 85 ~el~~a~~~~~~~~~~~-~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~-~Gg~~iE~~~d~~~~~--~P--- 157 (238)
T 1wr2_A 85 EELKKKWEEIHENAKKY-RPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFG-LGGIFVEILKDVTFRL--VP--- 157 (238)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEE-ECSTTHHHHCCCEEEE--SS---
T ss_pred HHHHHHHHHHHHhhhhh-CCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEe-cCCceeeeecceeeec--CC---
Confidence 99999999998765431 233457899999999999999999999996 8999999 9999999998876654 44
Q ss_pred CCHHHHHHHHh---------CCCh---hHHHHHHHHHHHHHHHhhccC--cceeeeeeeee-cCC-CeEEEeeEEEeCCC
Q 014514 158 MTLDACAPLIA---------TLPL---EFRGKIGDFIMGVFAVFQDLD--FSFIEMNPFTL-VNG-EPYPLDMRGELDDT 221 (423)
Q Consensus 158 l~~~~~~~ll~---------g~~~---~~~~~l~~~l~~L~~l~~~~d--~~~lEINPL~v-~~g-~~valDaki~ldd~ 221 (423)
+++..++++.. |+++ .|++++++++.+||+++.+++ +.++|||||++ .+| +++||||++++|||
T Consensus 158 l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~~~~~~~ 237 (238)
T 1wr2_A 158 ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237 (238)
T ss_dssp CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEEEEeCCC
Confidence 55677776643 4544 789999999999999999886 99999999999 666 79999999999986
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.84 E-value=8.4e-21 Score=196.92 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=129.7
Q ss_pred CccccCccccccccCCCCCCCCCCchhhcccccchhhhccCCcEEecC--CCcEEEEEcCccHHHHHHHHHhccCCCCC-
Q 014514 221 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNP--KGRIWTMVAGGGASVIYADTVGDLGYASE- 297 (423)
Q Consensus 221 ~a~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~v~l--~g~I~ii~NG~G~~~~~~D~l~~~g~gg~- 297 (423)
++.|||+.+. .++ ++.|. ......++| .+ ++||+||+||||++|+++|++..+ |++
T Consensus 262 ~AafRqaGv~-~v~---------~~~El--------~~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~--Gl~l 320 (457)
T 2csu_A 262 EAAFKQSGVL-VAN---------TIDEM--------LSMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKR--GLKL 320 (457)
T ss_dssp HHHHHHTTCE-EES---------SHHHH--------HHHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTT--TCEE
T ss_pred HHHHHhCCCe-EEC---------CHHHH--------HHHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHc--CCCC
Confidence 6889988743 222 33343 222334556 66 899999999999999999999985 666
Q ss_pred --------------------CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcC--CchhHHhhhHHHH
Q 014514 298 --------------------LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-GGGI--ANFTDVATTFNGI 354 (423)
Q Consensus 298 --------------------~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi--~~~~~va~~~~~i 354 (423)
++||+|++|++++++|.++++++++ ||+++++|+++ ++.. ..|++++ +++
T Consensus 321 ~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~----dp~vd~vlv~~~~~~~Gg~~~~~~a---~~i 393 (457)
T 2csu_A 321 ATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ----DPNVDMLIAICVVPTFAGMTLTEHA---EGI 393 (457)
T ss_dssp CCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH----STTCSEEEEEEECCCSTTCCSSHHH---HHH
T ss_pred CCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhc----CCCCCEEEEEccccccccCCchhHH---HHH
Confidence 6899999999999999999999999 99999999999 3322 3478888 999
Q ss_pred HHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 355 IRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 355 i~a~~~~~~~~~~~~~pvv~-rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
++++++.. .++||++ |++|++.++++++|++ +|||+| ++|++|++++..+++
T Consensus 394 ~~al~~~~-----~~kPvvv~~~~g~~~~~~~~~L~~----~Gip~~-----~spe~Av~al~~l~~ 446 (457)
T 2csu_A 394 IRAVKEVN-----NEKPVLAMFMAGYVSEKAKELLEK----NGIPTY-----ERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHHHC-----CCCCEEEEEECTTTTHHHHHHHHT----TTCCEE-----SSHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCEEEEeCCCcchHHHHHHHHh----CCCCcc-----CCHHHHHHHHHHHHH
Confidence 99998863 3688777 6999999999999998 999999 899999999998876
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.33 E-value=2.7e-12 Score=133.14 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=101.7
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCC---------------------------CCceeeccCCCCHHHHHHHHHHHH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASE---------------------------LGNYAEYSGAPNEEEVLQYARVVI 321 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~---------------------------~aN~lDlgG~a~~~~~~~a~~~ll 321 (423)
+.||++++||||++++++|++.. |.+.. .+||+|+. ++++|.++++.++
T Consensus 249 G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l 324 (480)
T 3dmy_A 249 SGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLG 324 (480)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHh
Confidence 57799999999999999999877 33221 25777776 7889999999999
Q ss_pred hhhccCCCCCEEEE--Ee-cCcCCch-hHHhhhHHHHHHHHHHhhhhhhcccce--EEEEeCCCC-H----HHHHHHHHh
Q 014514 322 DCATADPDGRKRAL--LI-GGGIANF-TDVATTFNGIIRALREKESKLKAARMH--IFVRRGGPN-Y----QTGLAKMRA 390 (423)
Q Consensus 322 ~~~~~~~~~~~vlv--~~-~ggi~~~-~~va~~~~~ii~a~~~~~~~~~~~~~p--vv~rl~G~~-~----~~a~~~l~~ 390 (423)
+ ||+++++++ .+ +++.+++ +++| +.|+++.++.. .++| ++++++|+. . ++++++|++
T Consensus 325 ~----D~~vd~vlv~~v~~~~~~~d~~~~~a---~ai~~~~~~~~-----~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~ 392 (480)
T 3dmy_A 325 A----KPQVRVLLLDVVIGFGATADPAASLV---SAWQKACAARL-----DNQPLYAIATVTGTERDPQCRSQQIATLED 392 (480)
T ss_dssp G----CTTEEEEEEEEECSTTSCSCHHHHHH---HHHHHHHHTSC-----TTSCCEEEEEEESCTTSTTCHHHHHHHHHH
T ss_pred c----CCCCCEEEEEeecCCCCCCChHHHHH---HHHHHHHHhcc-----CCCCeEEEEEecCcccchhhHHHHHHHHHh
Confidence 8 999999888 44 6778886 7888 99988765431 1467 566698874 2 346789998
Q ss_pred hccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 391 LGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 391 ~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+|||+| .||++|++.+..+++.
T Consensus 393 ----aGIp~f-----~spe~Av~a~~~l~~~ 414 (480)
T 3dmy_A 393 ----AGIAVV-----SSLPEATLLAAALIHP 414 (480)
T ss_dssp ----TTCEEC-----SSHHHHHHHHHHHTSC
T ss_pred ----CCCccc-----CCHHHHHHHHHHHHhc
Confidence 999998 8999999999988753
No 9
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.68 E-value=1.1e-07 Score=100.44 Aligned_cols=106 Identities=9% Similarity=0.041 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEE-----------------------------eeCCCHHhHHhhccccCCCcEE
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQV-----------------------------TESTDFSELTNKEPWLSSSRLV 56 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~-----------------------------~~~~~~~ea~~aa~~lg~~pvV 56 (423)
-+-+.+|++|+++ || |++++.. +.+ .+++.+++..+| ||||
T Consensus 163 ~DK~~~k~ll~~~-----GV--Pvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s--~~ea~~~a~~ig-yPvV 232 (540)
T 3glk_A 163 GDKIASTVVAQTL-----QV--PTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKD--VDEGLEAAERIG-FPLM 232 (540)
T ss_dssp -CHHHHHHHHHHT-----TC--CBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCS--HHHHHHHHHHHC-SSEE
T ss_pred CCHHHHHHHHHHc-----CC--CCCCcccccccccccccccccccccccccccccccCcCC--HHHHHHHHHhcC-CcEE
Confidence 4567899999999 85 5556544 333 378888888897 9999
Q ss_pred EeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 57 VKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 57 vK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
|||....|+| ||.+..+.+|+.+++++...... -..++||++++..+|+.+.+..|..|.++.++
T Consensus 233 VKp~~ggGG~----Gv~iv~~~~eL~~a~~~~~~~~~--------~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~ 297 (540)
T 3glk_A 233 IKASEGGGGK----GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 297 (540)
T ss_dssp EEETTCC--------EEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCSSEEEEEEEEEECTTSCEEEEE
T ss_pred EEECCCCCCC----CEEEECCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 9998876666 89999999999888877653211 24699999999669999999999888777654
No 10
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.68 E-value=1.4e-07 Score=100.33 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEE-----------------------------eeCCCHHhHHhhccccCCCcEEE
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQV-----------------------------TESTDFSELTNKEPWLSSSRLVV 57 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~-----------------------------~~~~~~~ea~~aa~~lg~~pvVv 57 (423)
+-..+|++|+++ || |++++.. +++ .+++.+++..+| |||||
T Consensus 180 DK~~ak~ll~~a-----GV--Pvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s--~eea~~~a~~iG-yPvVV 249 (587)
T 3jrx_A 180 DKIASTVVAQTL-----QV--PTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKD--VDEGLEAAERIG-FPLMI 249 (587)
T ss_dssp SHHHHHHHHHHT-----TC--CBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCS--HHHHHHHHHHHC-SSEEE
T ss_pred CHHHHHHHHHHc-----CC--CCCCeecccccccccccccccccccccchhhccccccCC--HHHHHHHHHhcC-CeEEE
Confidence 456789999999 85 5556543 333 478888888997 99999
Q ss_pred eeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 58 KPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 58 K~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
||....|+| ||.+..+.+|+.+++++...... -..++||++++..+|+.+.+..|..|.++.++
T Consensus 250 Kp~~GgGGk----Gv~iV~s~eEL~~a~~~a~~~~~--------~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~ 313 (587)
T 3jrx_A 250 KASEGGGGK----GIRKAESAEDFPILFRQVQSEIP--------GSPIFLMKLAQHARHLEVQILADQYGNAVSLF 313 (587)
T ss_dssp EETTCCSSS----SEEEECSTTTHHHHHHHHHHHST--------TCCEEEEECCCSCEEEEEEEEECSSSCEEEEE
T ss_pred EeCCCCCCC----CeEEeCCHHHHHHHHHHHHhhcc--------CCCEEEEEecCCCcEEEEEEEEcCCCCEEEEe
Confidence 999876666 89999999999988877653211 24699999999779999999999888776654
No 11
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.67 E-value=4.2e-07 Score=88.85 Aligned_cols=103 Identities=16% Similarity=0.084 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhc----cccCCCcEEEeeccccCccCCcCeeEEeCCHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE----PWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa----~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~ 82 (423)
+-+..|++|+++ | ||+|++.++++. +++.+.+ ..++ +|+|+||....+++ ||.+..+.+++.
T Consensus 107 dK~~~k~~l~~~-----G--ip~p~~~~~~~~--~~~~~~~~~~~~~~g-~PvvvKP~~~~~s~----Gv~~v~~~~el~ 172 (317)
T 4eg0_A 107 DKFRTKLVWQQT-----G--VPTPPFETVMRG--DDYAARATDIVAKLG-LPLFVKPASEGSSV----AVLKVKTADALP 172 (317)
T ss_dssp CHHHHHHHHHHT-----T--CCCCCEEEEETT--SCHHHHHHHHHHHHC-SCEEEEECC---------CCEEECSGGGHH
T ss_pred CHHHHHHHHHHC-----C--cCCCCEEEEECc--hhHHHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHH
Confidence 456788999999 8 566688888876 4555554 6776 89999998865555 788889999998
Q ss_pred HHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+++++... .-..+|||++++.++|+.+++..|+..+++...
T Consensus 173 ~a~~~~~~----------~~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~ 213 (317)
T 4eg0_A 173 AALSEAAT----------HDKIVIVEKSIEGGGEYTACIAGDLDLPLIKIV 213 (317)
T ss_dssp HHHHHHTT----------TCSEEEEEECCCSSEEEEEEEETTCCCCCEEEE
T ss_pred HHHHHHHh----------CCCeEEEEcCCCCCcEEEEEEECCcccceEEEe
Confidence 88876532 124699999999889999999988766665554
No 12
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.67 E-value=2.2e-07 Score=95.29 Aligned_cols=109 Identities=10% Similarity=0.149 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+..|++|+++ || |++++. .+++. +++.+++..++ +|+|+||..-.|+| ||.+..+.+++.++
T Consensus 119 dK~~~~~~l~~~-----Gi--p~p~~~~~~~~~~--~e~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 184 (446)
T 3ouz_A 119 DKSKAKQVMQRA-----GV--PVIPGSDGALAGA--EAAKKLAKEIG-YPVILKAAAGGGGR----GMRVVENEKDLEKA 184 (446)
T ss_dssp SHHHHHHHHHHT-----TC--CBCSBCSSSCCSH--HHHHHHHHHHC-SSEEEEETTCCTTC----SEEEECSGGGHHHH
T ss_pred CHHHHHHHHHHc-----CC--CcCCCcccCCCCH--HHHHHHHHHhC-CCEEEEECCCCCCC----CEEEECCHHHHHHH
Confidence 345678888888 85 555765 45554 88888888896 99999998765555 89999999999988
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++.+........+ -..++||++++..+|+.+.+..|..|.++.++
T Consensus 185 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~ 229 (446)
T 3ouz_A 185 YWSAESEAMTAFG----DGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVG 229 (446)
T ss_dssp HHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHhcC----CCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEe
Confidence 8877643221111 24689999999779999999999888777664
No 13
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.6e-09 Score=88.81 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHH
Q 014514 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~ 82 (423)
..+.+..|++|+++ || |++++. .+++. +++.+++..++ +|+|+||....+++ ||.+..|.+++.
T Consensus 6 ~~dK~~~~~~l~~~-----gi--p~p~~~~~~~~~~--~~~~~~~~~~~-~P~vvKp~~~~~~~----gv~~v~~~~el~ 71 (108)
T 2cqy_A 6 SGDKIESKLLAKKA-----EV--NTIPGFDGVVKDA--EEAVRIAREIG-YPVMIKASAGGGGK----GMRIAWDDEETR 71 (108)
T ss_dssp CCCCCCSTTCCCSS-----CC--CCCSCCCSCBSSH--HHHHHHHHHHC-SSEEEEETTSCCTT----TCEEESSHHHHH
T ss_pred hcCHHHHHHHHHHc-----CC--CCCCCcccccCCH--HHHHHHHHhcC-CCEEEEECCCCCCc----cEEEeCCHHHHH
Confidence 34556677888888 85 555765 55554 78877777886 89999999765544 888899999999
Q ss_pred HHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEE
Q 014514 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSI 121 (423)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi 121 (423)
+++++++.......+ -..+|||+|++..+|+.+++
T Consensus 72 ~~~~~~~~~~~~~~~----~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 72 DGFRLSSQEAASSFG----DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp HHHHHHHHHHHHHTS----SCCEEEEECCSSSSCCCSCC
T ss_pred HHHHHHHHHHHhhcC----CCcEEEeeccCCCcEEEEEe
Confidence 998887643221011 25699999999767887653
No 14
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.59 E-value=2e-07 Score=92.93 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeecccc-CccCCcCeeEEeCCHHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~-g~r~k~GGV~l~~~~ee~~~a 84 (423)
.+.+..|++|+++ | ||++++..+++. +++.+++..++ +|+|+||.... +++ ||.+..|.+|+.++
T Consensus 95 ~dK~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~ 160 (369)
T 3aw8_A 95 QDRLREKTFFQGL-----G--VPTPPFHPVDGP--EDLEEGLKRVG-LPALLKTRRGGYDGK----GQALVRTEEEALEA 160 (369)
T ss_dssp TCHHHHHHHHHHH-----T--CCCCCEEEESSH--HHHHHHHTTTC-SSEEEEECCC----------EEEECSHHHHHHH
T ss_pred cCHHHHHHHHHHC-----C--CCCCCceeeCCH--HHHHHHHHHcC-CCEEEEEcCCCCCcc----eEEEECCHHHHHHH
Confidence 4567899999999 8 566688888776 78888888886 89999999875 665 89999999999887
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++++. -..++||++++.+.|+.+.+..|+.|.++.++
T Consensus 161 ~~~~~------------~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 197 (369)
T 3aw8_A 161 LKALG------------GRGLILEGFVPFDREVSLLAVRGRTGEVAFYP 197 (369)
T ss_dssp HTTTC------------SSSEEEEECCCCSEEEEEEEEECTTSCEEECC
T ss_pred HHhcC------------CCcEEEEEcCCCCEEEEEEEEECCCCCEEEEC
Confidence 76541 13589999999889999999999877666554
No 15
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.59 E-value=7.4e-07 Score=90.07 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHH----hHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFS----ELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~----ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~ 82 (423)
+-+..|++|+++ | ||++++..+++. + ++.+++..++ +|+||||....+++ ||.+..+.+|+.
T Consensus 159 DK~~~k~~l~~~-----G--Ip~p~~~~~~~~--~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----Gv~~v~~~~el~ 224 (386)
T 3e5n_A 159 DKDMAKRVLRDA-----R--LAVAPFVCFDRH--TAAHADVDTLIAQLG-LPLFVKPANQGSSV----GVSQVRTADAFA 224 (386)
T ss_dssp BHHHHHHHHHHT-----T--CCBCCEEEEEHH--HHTTCCHHHHHHHHC-SSEEEEESBSCSST----TCEEECSGGGHH
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEEeCc--ccchhhHHHHHHhcC-CCEEEEECCCCcCC----CEEEECCHHHHH
Confidence 456789999999 8 566688888765 4 5666667786 89999999865444 788889999999
Q ss_pred HHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceE
Q 014514 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (423)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~i 130 (423)
+++++.+.. -..+|||++++ ++|+.+++..|+..+++
T Consensus 225 ~a~~~a~~~----------~~~vlVEe~I~-G~E~~v~vl~~~~~~~~ 261 (386)
T 3e5n_A 225 AALALALAY----------DHKVLVEAAVA-GREIECAVLGNAVPHAS 261 (386)
T ss_dssp HHHHHHTTT----------CSEEEEEECCC-SEEEEEEEECSSSCEEE
T ss_pred HHHHHHHhC----------CCcEEEEcCCC-CeEEEEEEEeCCCceEE
Confidence 888776421 14699999999 69999999988764333
No 16
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.59 E-value=3.5e-07 Score=92.84 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEee--CCCHHhHHhhccccCCCcEEEeecccc-CccCCcCeeEEeCCHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTE--STDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~--~~~~~ea~~aa~~lg~~pvVvK~qv~~-g~r~k~GGV~l~~~~ee~~~ 83 (423)
+-+..|++|+++ | ||++++..+. +. +++.+++..+| +|+|+||.... ++| ||.+..+.+|+.+
T Consensus 123 dK~~~k~~l~~~-----G--ip~p~~~~~~~~~~--~~~~~~~~~~g-~P~VvKp~~gg~~g~----Gv~~v~~~~el~~ 188 (403)
T 3k5i_A 123 NKFNQKEHLRKY-----G--IPMAEHRELVENTP--AELAKVGEQLG-YPLMLKSKTMAYDGR----GNFRVNSQDDIPE 188 (403)
T ss_dssp SHHHHHHHHHTT-----T--CCBCCEEEESSCCH--HHHHHHHHHHC-SSEEEEESSSCCTTT----TEEEECSTTSHHH
T ss_pred CHHHHHHHHHHC-----C--cCCCCEEEEcCCCH--HHHHHHHHHhC-CCEEEEeCCCCcCCC----CEEEECCHHHHHH
Confidence 456778889988 8 5666888887 54 88888888886 89999998653 555 8999999999888
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+++.+. + ..++||++++.+.|+.+.+..|+.| +..+
T Consensus 189 a~~~~~-------~-----~~~lvEe~i~~~~E~sv~v~~~~~g-~~~~ 224 (403)
T 3k5i_A 189 ALEALK-------D-----RPLYAEKWAYFKMELAVIVVKTKDE-VLSY 224 (403)
T ss_dssp HHHHTT-------T-----SCEEEEECCCEEEEEEEEEEECSSC-EEEC
T ss_pred HHHhcC-------C-----CcEEEecCCCCCeEEEEEEEEcCCC-EEEe
Confidence 876541 1 3589999999889999999999877 4443
No 17
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.56 E-value=1.1e-06 Score=88.45 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeecccc-CccCCcCeeEEeCCHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~-g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
+-+..|++|+++ | ||++++..+++. +++.+++..++ +|+|+||.... ++| ||.+..+.+++.+++
T Consensus 112 dK~~~k~~l~~~-----G--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~~ 177 (389)
T 3q2o_A 112 NRFTEKNAIEKA-----G--LPVATYRLVQNQ--EQLTEAIAELS-YPSVLKTTTGGYDGK----GQVVLRSEADVDEAR 177 (389)
T ss_dssp SHHHHHHHHHHT-----T--CCCCCEEEESSH--HHHHHHHHHHC-SSEEEEESSCCSSSC----CEEEESSGGGHHHHH
T ss_pred CHHHHHHHHHHC-----C--CCCCCeEEECCH--HHHHHHHHhcC-CCEEEEeCCCCCCCC----CeEEECCHHHHHHHH
Confidence 456778899998 8 566688888776 78888888886 99999997642 234 889999999988887
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+.+. . ..++||++++...|+.+.+..|..|.+..+
T Consensus 178 ~~~~----~--------~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~ 212 (389)
T 3q2o_A 178 KLAN----A--------AECILEKWVPFEKEVSVIVIRSVSGETKVF 212 (389)
T ss_dssp HHHH----H--------SCEEEEECCCCSEEEEEEEEECTTCCEEEC
T ss_pred HhcC----C--------CCEEEEecccCceEEEEEEEEcCCCCEEEe
Confidence 6542 1 258999999977999999999987765444
No 18
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.55 E-value=3.5e-07 Score=93.73 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +++.+.+..++ +|+|+||....++| ||.+..|.+|+.++++
T Consensus 107 dK~~~k~~l~~~-----G--Iptp~~~~~~~~--~ea~~~~~~~g-~PvVvKp~~~~gg~----GV~iv~~~~el~~a~~ 172 (431)
T 3mjf_A 107 SKAFTKDFLARH-----N--IPSAEYQNFTDV--EAALAYVRQKG-APIVIKADGLAAGK----GVIVAMTQEEAETAVN 172 (431)
T ss_dssp CHHHHHHHHHHT-----T--CSBCCEEEESCH--HHHHHHHHHHC-SSEEEEESSSCTTC----SEEEECSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCeEeeCCH--HHHHHHHHHcC-CeEEEEECCCCCCC----cEEEeCCHHHHHHHHH
Confidence 456788999999 8 566688888776 88888888886 89999999887766 8999999999999999
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+++..... + ..-..++||++++ +.|+.+.+..|.. .++.+
T Consensus 173 ~~~~~~~~--g--~~~~~vlvEe~i~-G~E~sv~~~~dg~-~~~~~ 212 (431)
T 3mjf_A 173 DMLAGNAF--G--DAGHRIVVEEFLD-GEEASFIVMVDGE-NVLPM 212 (431)
T ss_dssp HHHTTHHH--H--CCCCCEEEEECCC-SEEEEEEEEEESS-CEEEC
T ss_pred HHHhhccc--c--CCCCeEEEEEeeC-CcEEEEEEEEcCC-EEEEE
Confidence 88743211 1 1125799999999 7999999998864 44443
No 19
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.54 E-value=1e-06 Score=89.94 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccc----cCCCcEEEeec-cccCccCCcCeeEEeCCHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPW----LSSSRLVVKPD-MLFGKRGKSGLVALNLDLAQV 81 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~----lg~~pvVvK~q-v~~g~r~k~GGV~l~~~~ee~ 81 (423)
+-+..|++|+++ | ||++++..+++. +++.+++.. + +|+|+||. .-.++| ||.+..|.+|+
T Consensus 133 dK~~~k~~l~~~-----G--ip~p~~~~v~~~--~e~~~~~~~~~~~~--~P~VvKp~~~g~~G~----Gv~~v~~~~el 197 (419)
T 4e4t_A 133 DRIAEKRFIEAS-----G--VPVAPHVVIESA--AALAALDDAALDAV--LPGILKTARLGYDGK----GQVRVSTAREA 197 (419)
T ss_dssp CHHHHHHHHHHT-----T--CCBCCEEEECSH--HHHHTSCHHHHHTT--CSEEEEESSSCCTTT----TEEEECSHHHH
T ss_pred CHHHHHHHHHHc-----C--cCCCCeEEECCH--HHHHHHHHhhcccc--CCEEEEecCCCCCCC----ceEEECCHHHH
Confidence 346778999998 8 566688888776 788877777 7 79999997 444444 89999999999
Q ss_pred HHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
.++++.+- . ..++||++++.++|+.+.+.+|..|.++.+.
T Consensus 198 ~~a~~~~~-------~-----~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~ 237 (419)
T 4e4t_A 198 RDAHAALG-------G-----VPCVLEKRLPLKYEVSALIARGADGRSAAFP 237 (419)
T ss_dssp HHHHHHTT-------T-----CCEEEEECCCEEEEEEEEEEECTTSCEEECC
T ss_pred HHHHHhcC-------C-----CcEEEeecCCCCeEEEEEEEEcCCCCEEEEe
Confidence 98876541 1 3589999999889999999999887666554
No 20
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.52 E-value=5.5e-07 Score=92.58 Aligned_cols=101 Identities=18% Similarity=0.056 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +++.+++..++ +|+|+||....++| ||.+..|.+|+.++++
T Consensus 123 dK~~~k~~l~~~-----G--Ip~p~~~~~~~~--~ea~~~~~~~g-~PvVvKp~~~~gg~----GV~iv~~~eel~~a~~ 188 (442)
T 3lp8_A 123 SKGFTKELCMRY-----G--IPTAKYGYFVDT--NSAYKFIDKHK-LPLVVKADGLAQGK----GTVICHTHEEAYNAVD 188 (442)
T ss_dssp CHHHHHHHHHHH-----T--CCBCCEEEESSH--HHHHHHHHHSC-SSEEEEESSCCTTT----SEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEECCH--HHHHHHHHHcC-CcEEEeECCCCCCC----eEEEeCCHHHHHHHHH
Confidence 446789999999 8 566688888776 88888888886 89999999877666 8999999999999999
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 189 ~~~~~~~~--g--~~~~~vlvEe~i~-G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 189 AMLVHHKF--G--EAGCAIIIEEFLE-GKEISFFTLVDGS 223 (442)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHhhccc--C--CCCCeEEEEEeec-CcEEEEEEEECCC
Confidence 88743111 1 1124699999999 8999999998864
No 21
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.51 E-value=8.3e-07 Score=88.87 Aligned_cols=99 Identities=22% Similarity=0.105 Sum_probs=74.0
Q ss_pred HHHHHHH-HHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 9 YDSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 9 ~eak~lL-~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
+..|++| +++ | ||++++..+++. +++.+++..++ +|+|+||....++| ||.+..+.+|+.+++++
T Consensus 114 ~~~~~~l~~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~~ 179 (391)
T 1kjq_A 114 EGIRRLAAEEL-----Q--LPTSTYRFADSE--SLFREAVADIG-YPCIVKPVMSSSGK----GQTFIRSAEQLAQAWKY 179 (391)
T ss_dssp HHHHHHHHTTS-----C--CCBCCEEEESSH--HHHHHHHHHHC-SSEEEEESCC---C----CCEEECSGGGHHHHHHH
T ss_pred HHHHHHHHHhC-----C--CCCCCeeeeCCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----CeEEECCHHHHHHHHHH
Confidence 4567776 677 8 566688887766 78877777886 89999998766555 88899999999988887
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
+..... + .-..++||++++.+.|+.+.+..|..+
T Consensus 180 ~~~~~~---~---~~~~~lvEe~i~~g~E~sv~~~~~~~g 213 (391)
T 1kjq_A 180 AQQGGR---A---GAGRVIVEGVVKFDFEITLLTVSAVDG 213 (391)
T ss_dssp HHHHSG---G---GCCCEEEEECCCCSEEEEEEEEEETTE
T ss_pred HHhhcc---c---CCCCEEEEEecCCCeEEEEEEEEeCCC
Confidence 754321 1 124699999999889999999988766
No 22
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.49 E-value=3.1e-06 Score=84.62 Aligned_cols=98 Identities=21% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCC--HHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTD--FSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~--~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
.+-+..|++|+++ | ||++++..+++.+ ..++.+++..++ +||||||....++ -||.+..+.+|+.+
T Consensus 139 ~DK~~~k~~l~~~-----G--ip~p~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss----~Gv~~v~~~~el~~ 206 (364)
T 3i12_A 139 MDKDVAKRLLRDA-----G--LNIAPFITLTRTNRHAFSFAEVESRLG-LPLFVKPANQGSS----VGVSKVANEAQYQQ 206 (364)
T ss_dssp HCHHHHHHHHHHT-----T--CCBCCEEEEETTTGGGCCHHHHHHHHC-SSEEEEETTCCTT----TTCEEESSHHHHHH
T ss_pred HCHHHHHHHHHHC-----C--CCCCCEEEEEccccchhhHHHHHHhcC-CCEEEEECCCCCC----cCeEEeCCHHHHHH
Confidence 3567889999999 8 5666888888762 116666667786 8999999865333 37888899999998
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
++++.+.. -..+|||++++ ++|+.+++..|+.
T Consensus 207 a~~~a~~~----------~~~vlVEe~I~-G~E~~v~vl~~~~ 238 (364)
T 3i12_A 207 AVALAFEF----------DHKVVVEQGIK-GREIECAVLGNDN 238 (364)
T ss_dssp HHHHHHHH----------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHhc----------CCcEEEEcCcC-CeEEEEEEEeCCC
Confidence 88776421 14699999999 5999999998875
No 23
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.48 E-value=1.1e-06 Score=92.80 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEe--------------------------eCCCHHhHHhhccccCCCcEEEeec
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVT--------------------------ESTDFSELTNKEPWLSSSRLVVKPD 60 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~--------------------------~~~~~~ea~~aa~~lg~~pvVvK~q 60 (423)
+-+.+|++|+++ || |++++... ++ .+++.+++..++ +|+|+||.
T Consensus 173 dK~~~k~~l~~~-----GI--p~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~--~~e~~~~~~~~g-~PvVvKp~ 242 (554)
T 1w96_A 173 DKISSTIVAQSA-----KV--PCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTS--PEDGLQKAKRIG-FPVMIKAS 242 (554)
T ss_dssp SHHHHHHHHHHT-----TC--CBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSS--HHHHHHHHHHHC-SSEEEEET
T ss_pred CHHHHHHHHHHC-----CC--CcCCccccccccccccccccccccccccccccCCCC--HHHHHHHHHHcC-CCEEEEEC
Confidence 446688899998 85 55465332 23 477777777886 89999999
Q ss_pred cccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 61 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 61 v~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
...|+| ||.+..+.+|+..+++++.... .-..++||++++.++|+.+.+..|..|.++.+
T Consensus 243 ~g~gg~----Gv~~v~~~~el~~a~~~~~~~~--------~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l 302 (554)
T 1w96_A 243 EGGGGK----GIRQVEREEDFIALYHQAANEI--------PGSPIFIMKLAGRARHLEVQLLADQYGTNISL 302 (554)
T ss_dssp TCCTTT----TEEEECSHHHHHHHHHHHHHHS--------TTCCEEEEECCCSCEEEEEEEEECTTSCEEEE
T ss_pred CCCCCc----eEEEECCHHHHHHHHHHHHhhc--------cCCCEEEEEecCCCcEEEEEEEEcCCCCEEEE
Confidence 877777 8999999999998888775421 12469999999988999999999987766543
No 24
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.44 E-value=1.1e-06 Score=89.06 Aligned_cols=101 Identities=21% Similarity=0.206 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +|+.+++..++ +|+|+||....++| ||.+..|.+|+.++++
T Consensus 106 dK~~~k~~l~~~-----g--ip~p~~~~~~~~--~e~~~~~~~~g-~PvvvKp~~~~gg~----Gv~~v~~~~el~~a~~ 171 (412)
T 1vkz_A 106 SKVYAKRFMKKY-----G--IRTARFEVAETP--EELREKIKKFS-PPYVIKADGLARGK----GVLILDSKEETIEKGS 171 (412)
T ss_dssp CHHHHHHHHHHT-----T--CCCCCEEEESSH--HHHHHHHTTSC-SSEEEEESSCCSSC----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCEEEECCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 446788999998 8 566688887766 78888888886 89999999876665 8999999999999988
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+++..... .+. -..++||++++ +.|+.+.+..|..
T Consensus 172 ~~~~~~~~-~g~---~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 172 KLIIGELI-KGV---KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp HHHHTSSS-TTC---CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhccc-cCC---CCeEEEEECCc-CcEEEEEEEECCC
Confidence 87643100 111 12699999999 8999999998754
No 25
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.42 E-value=1.5e-06 Score=88.56 Aligned_cols=100 Identities=14% Similarity=0.004 Sum_probs=68.9
Q ss_pred HHHHHHH-HHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 9 YDSKRLL-KEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 9 ~eak~lL-~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
+..|++| +++ | ||++++..+++. +++.+++..++ +|+|+||....+++ ||.+..+.+|+.+++++
T Consensus 122 ~~~k~~l~~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~~ 187 (433)
T 2dwc_A 122 ERLRETLVKEA-----K--VPTSRYMYATTL--DELYEACEKIG-YPCHTKAIMSSSGK----GSYFVKGPEDIPKAWEE 187 (433)
T ss_dssp HHHHHHHHHTS-----C--CCCCCEEEESSH--HHHHHHHHHHC-SSEEEEECCC----------EEECSGGGHHHHHHC
T ss_pred HHHHHHHHHhc-----C--CCCCCeeEeCCH--HHHHHHHHhcC-CCEEEEECCCcCCC----CeEEECCHHHHHHHHHH
Confidence 4567777 777 8 566688887765 78877777886 89999998766555 88899999999888876
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC--CCc
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR--LGC 128 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~--~gp 128 (423)
+..... + .-..++||++++.+.|+.+.+..|. +|.
T Consensus 188 ~~~~~~---~---~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~ 224 (433)
T 2dwc_A 188 AKTKAR---G---SAEKIIVEEHIDFDVEVTELAVRHFDENGE 224 (433)
T ss_dssp ---------------CCEEEEECCCCSEEEEECCEEEECTTSC
T ss_pred HHhhcc---c---CCCCEEEEccCCCCeeEEEEEEecccCCCC
Confidence 653211 0 1246999999998899999998875 554
No 26
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.41 E-value=4.4e-07 Score=98.30 Aligned_cols=110 Identities=13% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
-+-+.+|++|+++ || |++++. .+.+. +++.+++..+| ||||+||..-.|+| ||.+..+.+|+.+
T Consensus 114 ~dK~~~k~~l~~~-----GV--Pvpp~~~~~~~s~--~e~~~~a~~ig-yPvVvKp~~ggggk----Gv~iv~~~~el~~ 179 (681)
T 3n6r_A 114 GDKITSKKIAQEA-----NV--STVPGYMGLIEDA--DEAVKISNQIG-YPVMIKASAGGGGK----GMRIAWNDQEARE 179 (681)
T ss_dssp TSHHHHHHHHHTT-----TC--CCCCC-----------------------------------------------------
T ss_pred CCHHHHHHHHHHc-----Cc--CcCCccccCcCCH--HHHHHHHHhcC-CcEEEEECCCCCCC----CEEEECCHHHHHH
Confidence 3557789999999 85 555653 45555 78888888896 99999998766666 8999999999888
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+++.+....... ..-..++||++++..+|+.+.+..|..|.++.++
T Consensus 180 a~~~~~~ea~~~----fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 180 GFQSSKNEAANS----FGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp ---------------------------CCSCEEEEEEEECCSSSCCEEEE
T ss_pred HHHHHHHHHHHh----CCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEe
Confidence 877765432210 0125699999999779999999999888777665
No 27
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.41 E-value=3.5e-06 Score=84.74 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
-+..|++|+++ | +|++++..+++. +++.+.+..++ +|+|+||....|++ ||.+..+.+|+.+++.+
T Consensus 110 K~~~~~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~g~gg~----Gv~~v~~~~el~~~~~~ 175 (403)
T 4dim_A 110 KYKMKEAFKKY-----N--VNTARHFVVRNE--NELKNALENLK-LPVIVKATDLQGSK----GIYIAKKEEEAIDGFNE 175 (403)
T ss_dssp HHHHHHHHHHH-----T--CCCCCEECCCSH--HHHHHHHHTSC-SSEEEECSCC---------CEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----C--CCCCCEEEeCCH--HHHHHHHhcCC-CCEEEEECCCCCCC----CEEEECCHHHHHHHHHH
Confidence 35678889998 8 566688777765 88888888886 99999998876666 89999999999998887
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceE
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~i 130 (423)
+.... .-..++||++++ +.|+.+.+..+. |.+.
T Consensus 176 ~~~~~--------~~~~~lvEe~i~-g~e~sv~~~~~~-g~~~ 208 (403)
T 4dim_A 176 TMNLT--------KRDYCIVEEFIE-GYEFGAQAFVYK-NDVL 208 (403)
T ss_dssp HHHHC--------SSSCCEEEECCC-SEEEEEEEEEET-TEEE
T ss_pred HHhcC--------cCCcEEEEEccC-CcEEEEEEEEEC-CEEE
Confidence 75431 124689999999 689999888643 4343
No 28
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.37 E-value=6.1e-07 Score=97.05 Aligned_cols=109 Identities=13% Similarity=0.165 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEE--eeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQV--TESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~--~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+.+|++|+++ || |++++.. +.+. +++.+++..+| ||||+||..-.|+| ||.+..+.+|+.++
T Consensus 141 DK~~~k~~l~~~-----GV--pvpp~~~~~~~s~--~e~~~~a~~ig-yPvvvKp~~G~Gg~----Gv~iv~~~~el~~a 206 (675)
T 3u9t_A 141 SKSAAKALMEEA-----GV--PLVPGYHGEAQDL--ETFRREAGRIG-YPVLLKAAAGGGGK----GMKVVEREAELAEA 206 (675)
T ss_dssp SHHHHHHHHHHT-----TC--CBCCCCCSCCCCT--THHHHHHHHSC-SSBCCBCCC----------CCCBCCTTTHHHH
T ss_pred hHHHHHHHHHHc-----Cc--CcCCccccCCCCH--HHHHHHHHhCC-CcEEEEECCCCCCc----cEEEECCHHHHHHH
Confidence 456788999998 85 5556654 4455 78888888997 99999998766666 88899999998888
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++.+....... ..-..++||++++..+|+.+.+..|..|.++.++
T Consensus 207 ~~~~~~ea~~~----fg~~~vlvEeyI~g~reiev~v~~d~~G~vv~l~ 251 (675)
T 3u9t_A 207 LSSAQREAKAA----FGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLN 251 (675)
T ss_dssp HSCCCC------------CCCBCCBCCSSCBCEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHHh----cCCCcEEEEeecCCCcEEEEEEEEcCCCCEEEEe
Confidence 76554322110 0124689999999779999999999888777654
No 29
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.36 E-value=6.5e-07 Score=89.00 Aligned_cols=102 Identities=24% Similarity=0.228 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeecccc-CccCCcCeeEEeCCHHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~-g~r~k~GGV~l~~~~ee~~~a 84 (423)
.+-+..|++|+++ | ||++++..++ . +++.+.+..++ +|+|+||.... +++ ||.+..+.+|+.++
T Consensus 91 ~dK~~~~~~l~~~-----g--ip~p~~~~~~-~--~~~~~~~~~~~-~P~vvKp~~~~~~g~----Gv~~v~~~~el~~~ 155 (365)
T 2z04_A 91 KSRIREKLFLKKH-----G--FPVPEFLVIK-R--DEIIDALKSFK-LPVVIKAEKLGYDGK----GQYRIKKLEDANQV 155 (365)
T ss_dssp TCHHHHHHHHHTT-----T--CCCCCEEEC------------------CEEEECC-------------------------
T ss_pred hCHHHHHHHHHHc-----C--CCCCCEEEEc-H--HHHHHHHHhcC-CCEEEEEcCCCcCCC----CeEEECCHHHHHHH
Confidence 3567789999999 8 5666888776 6 67777777786 89999998875 666 78888899988887
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
++++++ -..++||++++.+.|+.+.+..|..|.++.++
T Consensus 156 ~~~~~~-----------~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 193 (365)
T 2z04_A 156 VKNHDK-----------EESFIIEEFVKFEAEISCIGVRDREGKTYFYP 193 (365)
T ss_dssp --------------------CEEEECCCCSEEEEEEEEECTTCCEEECC
T ss_pred HHHhcc-----------CCCEEEEccCCCCEEEEEEEEECCCCCEEEEC
Confidence 766642 13589999999889999999999877665553
No 30
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.33 E-value=3e-06 Score=84.79 Aligned_cols=94 Identities=20% Similarity=0.089 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccc-cCccCCcCeeEEeCC--HHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDML-FGKRGKSGLVALNLD--LAQVAEFV 85 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~-~g~r~k~GGV~l~~~--~ee~~~a~ 85 (423)
+..|++|+++ | ||++++..+++. +++.+++..+| +|+||||... .+|| ||.+..+ .+|+.+++
T Consensus 81 ~~~k~~l~~~-----G--Iptp~~~~v~~~--~e~~~~~~~~G-~P~VvKp~~~G~~Gk----Gv~~v~~~~~~el~~a~ 146 (355)
T 3eth_A 81 LTQKQLFDKL-----H--LPTAPWQLLAER--SEWPAVFDRLG-ELAIVKRRTGGYDGR----GQWRLRANETEQLPAEC 146 (355)
T ss_dssp HHHHHHHHHT-----T--CCBCCEEEECCG--GGHHHHHHHHC-SEEEEEESSSCCTTT----TEEEEETTCGGGSCGGG
T ss_pred HHHHHHHHHC-----c--cCCCCEEEECCH--HHHHHHHHHcC-CCEEEEecCCCCCCC----eEEEEcCCCHHHHHHHh
Confidence 4578888888 8 566688888876 78888888896 9999999864 4445 7888877 88766521
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+ + .++||++++.++|+.+.+.+|..|.+..+
T Consensus 147 -------~---~------~vivEe~I~~~~Eisv~v~~~~~G~~~~~ 177 (355)
T 3eth_A 147 -------Y---G------ECIVEQGINFSGEVSLVGARGFDGSTVFY 177 (355)
T ss_dssp -------T---T------TEEEEECCCCSEEEEEEEEECTTSCEEEC
T ss_pred -------h---C------CEEEEEccCCCcEEEEEEEEcCCCCEEEE
Confidence 1 1 38999999988999999999987765544
No 31
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.32 E-value=5e-06 Score=94.41 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+..+++|+++ | ||+|++..+++. +|+.+++..+| |||||||....|+| ||.+..+.+++.++++++
T Consensus 676 ~~~~~ll~~~-----G--Ip~P~~~~~~s~--eea~~~~~~ig-~PvvVKP~~~~gG~----Gv~iv~~~~el~~~~~~a 741 (1073)
T 1a9x_A 676 ERFQHAVERL-----K--LKQPANATVTAI--EMAVEKAKEIG-YPLVVRASYVLGGR----AMEIVYDEADLRRYFQTA 741 (1073)
T ss_dssp HHHHHHHHHH-----T--CCCCCEEECCSH--HHHHHHHHHHC-SSEEEEC-----------CEEEECSHHHHHHHHHHC
T ss_pred HHHHHHHHHc-----C--cCCCCceEECCH--HHHHHHHHHcC-CCEEEEECCCCCCC----CeEEECCHHHHHHHHHHH
Confidence 4568889998 8 566688888776 88888888896 99999999877777 899999999999888776
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
.... .-..+|||++++..+|+.+.+..|..+
T Consensus 742 ~~~~--------~~~~vlvEefI~g~~E~~V~~l~d~~~ 772 (1073)
T 1a9x_A 742 VSVS--------NDAPVLLDHFLDDAVEVDVDAICDGEM 772 (1073)
T ss_dssp C----------------EEEBCCTTCEEEEEEEEECSSC
T ss_pred HhhC--------CCCcEEEEEccCCCcEEEEEEEEECCe
Confidence 4211 124699999999777999999998754
No 32
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.32 E-value=4.3e-06 Score=84.11 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCH-H-hHHhhccccCCCc-EEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF-S-ELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~-~-ea~~aa~~lg~~p-vVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
+-+..|++|+++ | ||++++..+++.+. + ...++...++ +| +||||....+++ ||.+..+.+|+..
T Consensus 140 DK~~~k~~l~~~-----G--Ip~p~~~~~~~~~~~~~~~~~~~~~lg-~P~vvVKP~~ggss~----Gv~~v~~~~eL~~ 207 (372)
T 3tqt_A 140 EKDLTKTVLRAG-----G--IPVVDWHTLSPRDATEGVYQRLLDRWG-TSELFVKAVSLGSSV----ATLPVKTETEFTK 207 (372)
T ss_dssp SHHHHHHHHHHT-----T--CCBCCCEEECTTSCCTTHHHHHHHHC----CEEEEESSCCSGG----GEEEECSHHHHHH
T ss_pred CHHHHHHHHHHC-----C--cCCCCEEEEechhhhhhHHHHHHHhcC-CCeEEEEECCCCCCC----CEEEECCHHHHHH
Confidence 345678899998 8 56668888876521 1 1334556776 89 999998764444 7899999999998
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
+.++.... -..+|||++++ ++|+.+++..|.
T Consensus 208 a~~~a~~~----------~~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 208 AVKEVFRY----------DDRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp HHHHHTTT----------CSCEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHhc----------CCCEEEECCCC-CEEEEEEEEeCC
Confidence 87765321 13589999999 799999999876
No 33
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.30 E-value=1.1e-05 Score=80.26 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCH-HhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF-SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~-~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
=+..|++|++. | +|+|++..+++.+. ..+.+++..+| +||+|||-...+++ ||.+..+.+++.++..
T Consensus 140 K~~~k~~l~~~-----G--ip~p~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~gg~s~----Gv~~v~~~~el~~~~~ 207 (357)
T 4fu0_A 140 KDRAHKLVSLA-----G--ISVPKSVTFKRFNEEAAMKEIEANLT-YPLFIKPVRAGSSF----GITKVIEKQELDAAIE 207 (357)
T ss_dssp HHHHHHHHHHT-----T--CBCCCEEEEEGGGHHHHHHHHHHHCC-SSEEEEETTCSSST----TCEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHC-----C--CCCCCEEeecCCChHHHHHHHHHhcC-CCEEEEECCCCCCC----ceEEeccHHhHHHHHH
Confidence 45678999998 8 56668888776522 22344566786 99999997654444 8889999999988876
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
.... .-..+|||++++ ++|+-+++..|..
T Consensus 208 ~a~~----------~~~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 208 LAFE----------HDTEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp HHTT----------TCSEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHhc----------cCCeEEEEEecC-CEEEEEEEEecCC
Confidence 6532 114689999997 8899999988764
No 34
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.28 E-value=1e-06 Score=96.22 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhc-cccCCCcEEEeeccccCccCCcCeeEEeC---CHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE-PWLSSSRLVVKPDMLFGKRGKSGLVALNL---DLAQVAE 83 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa-~~lg~~pvVvK~qv~~g~r~k~GGV~l~~---~~ee~~~ 83 (423)
-..+|++|+++ | ||+|++.++++. +++.+++ ..+| +||||||....+|+ ||.+.. +.+++.+
T Consensus 485 K~~tk~lL~~~-----G--IPvP~~~~~~~~--~ea~~~~~~~~g-~PvVVKP~~G~~G~----GV~iv~~~~s~eel~~ 550 (750)
T 3ln6_A 485 KVVTKKILDEK-----H--FPTPFGDEFTDR--KEALNYFSQIQD-KPIVVKPKSTNFGL----GISIFKTSANLASYEK 550 (750)
T ss_dssp SHHHHHHHHHT-----T--CCCCCCCCEETT--TTHHHHHHHSSS-SCEEEEETTCCSSS----SCEEESSCCCHHHHHH
T ss_pred HHHHHHHHHHC-----C--cCCCCEEEECCH--HHHHHHHHHhcC-CcEEEEeCCCCCCC----CEEEEeCCCCHHHHHH
Confidence 35689999999 8 566688888877 6776665 5665 89999997754444 888876 8999999
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCce------EEeccCCccccccc
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCT------ISFSECGGIEIEEN 143 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~------il~~~~GGv~vE~~ 143 (423)
+++.++.. ...++||++++ +.|+.+.+..|+.-+. -+.| -|+..|+++
T Consensus 551 a~~~~~~~----------~~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~G-dG~~tI~eL 604 (750)
T 3ln6_A 551 AIDIAFTE----------DSAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVG-DGIHTISQL 604 (750)
T ss_dssp HHHHHHHH----------CSEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEEC-CTTCCHHHH
T ss_pred HHHHHHhh----------CCcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEec-CCccCHHHH
Confidence 88876521 14699999999 7999999986654222 2334 899988875
No 35
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.28 E-value=7.5e-06 Score=82.66 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHhhhccCC-CCCcCCceEEeeCCC-H-HhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAG-LDLQICSAQVTESTD-F-SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE 83 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~G-I~ipv~~~~~~~~~~-~-~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~ 83 (423)
+-+..|++|+++ | | |++++..+++.+ . +++.++...++ +||||||....+++ ||.+..+.+|+.+
T Consensus 161 DK~~~k~~l~~~-----G~I--pvp~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----GV~~v~~~~el~~ 228 (383)
T 3k3p_A 161 DKITTNQVLESA-----TTI--PQVAYVALIEGEPLESKLAEVEEKLI-YPVFVKPANMGSSV----GISKAENRTDLKQ 228 (383)
T ss_dssp CHHHHHHHHHHH-----CCC--CBCCEEEEETTSCHHHHHHHHHHHCC-SSEEEEECC----------CEEESSHHHHHH
T ss_pred CHHHHHHHHHhC-----CCc--CCCCEEEEeCccchhHHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHH
Confidence 456789999999 7 6 555888887652 2 35556667786 89999998764434 7888899999998
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
++++.... . ..+|||++++ ++|+.+++..|.
T Consensus 229 al~~a~~~-----~-----~~vlVEe~I~-G~E~~v~vl~d~ 259 (383)
T 3k3p_A 229 AIALALKY-----D-----SRVLIEQGVD-AREIEVGILGNT 259 (383)
T ss_dssp HHHHHHHH-----C-----SEEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHhC-----C-----CeEEEEcCCC-CeEEEEEEEeCC
Confidence 88766421 1 3699999999 899999999874
No 36
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.27 E-value=2.6e-06 Score=87.17 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
-+..|++|+++ || |++++. .+++. +++.+.+..++ +|+|+||....++| ||.+..+.+|+.+++
T Consensus 115 K~~~k~~l~~~-----gi--p~p~~~~~~~~~~--~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~ 180 (451)
T 1ulz_A 115 KARSKEVMKKA-----GV--PVVPGSDGVLKSL--EEAKALAREIG-YPVLLKATAGGGGR----GIRICRNEEELVKNY 180 (451)
T ss_dssp HHHHHHHHHHT-----TC--CBCCBCSSSCCCH--HHHHHHHHHHC-SSEEEEECSSSSCC----SCEEESSHHHHHHHH
T ss_pred HHHHHHHHHHc-----CC--CCCCCcccccCCH--HHHHHHHHHcC-CCEEEEECCCCCCc----cEEEeCCHHHHHHHH
Confidence 35678888888 85 555765 45554 78877777886 89999999876666 899999999999888
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+++........+ -..++||++++..+|+.+.+..|..|.++.++
T Consensus 181 ~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~ 224 (451)
T 1ulz_A 181 EQASREAEKAFG----RGDLLLEKFIENPKHIEYQVLGDKHGNVIHLG 224 (451)
T ss_dssp HHHHHHHHHTTS----CCCEEEEECCCSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHhcC----CCeEEEEEcccCCeEEEEEEEEcCCCCEEEEe
Confidence 877542111001 14699999999778999999999877665543
No 37
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.25 E-value=2.2e-06 Score=97.72 Aligned_cols=109 Identities=7% Similarity=0.052 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+.+|++|+++ | ||++++. .+++. +++.+++..+| ||||+||..-.|+| ||.+..+.+|+.++
T Consensus 118 DK~~~r~ll~~a-----G--IPvpp~~~~~v~s~--eea~~~a~~iG-yPvVVKP~~GgGg~----Gv~vv~s~eeL~~a 183 (1150)
T 3hbl_A 118 DKVKARTTAIKA-----D--LPVIPGTDGPIKSY--ELAKEFAEEAG-FPLMIKATSGGGGK----GMRIVREESELEDA 183 (1150)
T ss_dssp SHHHHHHHHHHT-----T--CCBCCBCSSCBCSS--STTTTTGGGTC-SSEEEECCC-----------CEECCSSSCTHH
T ss_pred CHHHHHHHHHHc-----C--cCCCCccccCCCCH--HHHHHHHHHcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHH
Confidence 456788899998 8 5555766 55665 78888888896 99999998766666 78888899888888
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+++........ ..-..++||++++..+|+.+.+..|..|.++.++
T Consensus 184 ~~~a~~~a~~~----fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~ 228 (1150)
T 3hbl_A 184 FHRAKSEAEKS----FGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLF 228 (1150)
T ss_dssp HHSSSSSCC----------CBEEECCCSSCEEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHhh----cCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEE
Confidence 77654322110 0125699999999779999999999888777553
No 38
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.25 E-value=2.4e-06 Score=85.78 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeecccc-CccCCcCeeEEeCCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~-g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
-+..|++|+++ | +|++++..+++. +++.+++..+| +|+|+||.... ++| ||.+..+.+++.++++
T Consensus 111 K~~~k~~l~~~-----G--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvKp~~gg~~g~----Gv~~v~~~~el~~a~~ 176 (377)
T 3orq_A 111 RLTEKETLKSA-----G--TKVVPFISVKES--TDIDKAIETLG-YPFIVKTRFGGYDGK----GQVLINNEKDLQEGFK 176 (377)
T ss_dssp HHHHHHHHHHT-----T--CCBCCEEEECSS--THHHHHHHHTC-SSEEEEESSSCCTTT----TEEEECSTTSHHHHHH
T ss_pred HHHHHHHHHHC-----C--CCCCCeEEECCH--HHHHHHHHHcC-CCEEEEeCCCCCCCC----CeEEECCHHHHHHHHH
Confidence 35678888888 8 566688888877 78888888886 89999997653 444 8999999999888877
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
.+.. ..++||++++...|+.+.+.+|..|.+..+
T Consensus 177 ~~~~------------~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~ 210 (377)
T 3orq_A 177 LIET------------SECVAEKYLNIKKEVSLTVTRGNNNQITFF 210 (377)
T ss_dssp HHTT------------SCEEEEECCCEEEEEEEEEEECGGGCEEEC
T ss_pred hcCC------------CcEEEEccCCCCEEEEEEEEEeCCCCEEEE
Confidence 6532 358999999966899999998877766554
No 39
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.25 E-value=1.7e-05 Score=78.48 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||+|++.++++. + ......++ +|+||||....+++ ||.+..+.+++..+.+
T Consensus 132 dK~~~k~~l~~~-----G--ip~p~~~~~~~~--~--~~~~~~lg-~PvvvKP~~~~~s~----Gv~~v~~~~el~~a~~ 195 (346)
T 3se7_A 132 DKSLTYLVARSA-----G--IATPNFWTVTAD--E--KIPTDQLT-YPVFVKPARSGSSF----GVSKVAREEDLQGAVE 195 (346)
T ss_dssp SHHHHHHHHHHT-----T--CBCCCEEEEETT--S--CCCTTTCC-SSEEEEESSCCTTT----TCEEECSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----C--cCcCCEEEEcCc--H--HHHHHhcC-CCEEEEeCCCCCCc----CEEEECCHHHHHHHHH
Confidence 456788999999 8 566688888875 2 33455675 89999998765444 7888899999998887
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
+.... -..+|||++++ +.|+.+++..|..+
T Consensus 196 ~~~~~----------~~~vlvEe~I~-G~E~~v~vl~~~~~ 225 (346)
T 3se7_A 196 AAREY----------DSKVLIEEAVI-GTEIGCAVMGNGPE 225 (346)
T ss_dssp HHTTT----------CSEEEEEECCC-SEEEEEEEEEETTE
T ss_pred HHHhC----------CCcEEEEeCcC-CEEEEEEEEecCCC
Confidence 76421 14699999999 89999999998654
No 40
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.25 E-value=3.6e-06 Score=86.13 Aligned_cols=108 Identities=10% Similarity=0.088 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhH-HhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSEL-TNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea-~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
-+..|++|+++ || |++++. .+++. +++ .+.+..++ +|+|+||....++| ||.+..|.+|+.++
T Consensus 116 K~~~k~~l~~~-----gi--p~p~~~~~~~~~~--~~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 181 (449)
T 2w70_A 116 KVSAIAAMKKA-----GV--PCVPGSDGPLGDD--MDKNRAIAKRIG-YPVIIKASGGGGGR----GMRVVRGDAELAQS 181 (449)
T ss_dssp HHHHHHHHHHH-----TC--CBCSBCSSCCCSC--HHHHHHHHHHHC-SSEEEEETTCCTTT----TCEEECSHHHHHHH
T ss_pred HHHHHHHHHHc-----CC--CcCCCcccccCCH--HHHHHHHHHHhC-CcEEEEECCCCCCC----CEEEeCCHHHHHHH
Confidence 35678899999 85 555765 56666 777 77777786 89999999877666 88999999999988
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+++++.......+ -..++||++++..+|+.+.+..|..|.++.++
T Consensus 182 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~ 226 (449)
T 2w70_A 182 ISMTRAEAKAAFS----NDMVYMEKYLENPRHVEIQVLADGQGNAIYLA 226 (449)
T ss_dssp HHHHHHHHHHHHS----CCCEEEEECCSSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHhhcC----CCcEEEEeccCCCeEEEEEEEEcCCCCEEEEe
Confidence 8877542111001 14699999999778999999999877665443
No 41
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.24 E-value=3e-06 Score=86.69 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
-+..|++|+++ || |++++. .+++. +++.+.+..++ +|+|+||....++| ||.+..+.+|+.+++
T Consensus 115 K~~~k~~l~~~-----gi--p~p~~~~~~~~~~--~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~ 180 (451)
T 2vpq_A 115 KDVAKAEMIKA-----NV--PVVPGSDGLMKDV--SEAKKIAKKIG-YPVIIKATAGGGGK----GIRVARDEKELETGF 180 (451)
T ss_dssp HHHHHHHHHHT-----TC--CBCSBCSSCBSCH--HHHHHHHHHHC-SSEEEEETTCCTTC----SEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHc-----CC--CcCCCcccCcCCH--HHHHHHHHhcC-CcEEEEECCCCCCC----CEEEeCCHHHHHHHH
Confidence 35678888888 85 555654 45554 78877777886 89999999876666 899999999999888
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+++........+ -..++||++++..+|+.+.+..|..|.++.++
T Consensus 181 ~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~ 224 (451)
T 2vpq_A 181 RMTEQEAQTAFG----NGGLYMEKFIENFRHIEIQIVGDSYGNVIHLG 224 (451)
T ss_dssp HHHHHHHHHHHS----CCCEEEEECCCSEEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHhhcC----CCcEEEEEecCCCeEEEEEEEEcCCCCEEEEe
Confidence 877542111001 14699999999668999999999877665543
No 42
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.23 E-value=2e-06 Score=98.47 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhccCCCCCcCCce-EEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSA-QVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~-~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
+.+|++|+++ || |++++ .++++. +++.+++..+| ||||+||....|+| ||.+..|.+|+.+++++
T Consensus 146 ~~ak~ll~~a-----GI--Pvpp~~~~v~s~--eea~~~a~~iG-yPvVVKP~~GgGGk----GV~iv~s~eEL~~a~~~ 211 (1236)
T 3va7_A 146 HSAREIAERA-----KV--PLVPGSGLIKDA--KEAKEVAKKLE-YPVMVKSTAGGGGI----GLQKVDSEDDIERVFET 211 (1236)
T ss_dssp THHHHHHHHT-----TC--CCCC---------------------------------------------------------
T ss_pred HHHHHHHHHc-----CC--CCCCeeEecCCH--HHHHHHHHHcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHH
Confidence 4678899998 84 55464 455555 78888888896 99999998776666 88999999999888877
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEec
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFS 133 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~~ 133 (423)
+....... ..-..++||++++..+|+.+.+..|..+.++.++
T Consensus 212 ~~~~a~~~----~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~ 253 (1236)
T 3va7_A 212 VQHQGKSY----FGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIG 253 (1236)
T ss_dssp -------------------------CCEEEEEEEEEESSSCEEEEE
T ss_pred HHHHHHhc----cCCCcEEEeeccCCCeEEEEEEEecCCceEEEEe
Confidence 65422110 0124699999999779999999999887777665
No 43
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.22 E-value=4.2e-06 Score=94.98 Aligned_cols=104 Identities=13% Similarity=0.210 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | +|++++..+++. +|+.+++..+| +|||+||....|++ ||.+..|.+|+.+++.
T Consensus 128 DK~~~k~~l~~~-----G--ipvp~~~~v~~~--~ea~~~~~~ig-~PvVvKp~~~~Gg~----Gv~iv~~~eel~~~~~ 193 (1073)
T 1a9x_A 128 DRRRFDVAMKKI-----G--LETARSGIAHTM--EEALAVAADVG-FPCIIRPSFTMGGS----GGGIAYNREEFEEICA 193 (1073)
T ss_dssp SHHHHHHHHHHT-----T--CCCCSEEEESSH--HHHHHHHHHHC-SSEEEEETTCCTTT----TCEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----C--cCCCCEEEECCH--HHHHHHHHHcC-CCEEEEECCCCCCC----ceEEeCCHHHHHHHHH
Confidence 345678888998 8 566688888776 88888888886 89999999876666 8888999999999888
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
+.+... ....+|||++++..+|+.+.+..|..|.++.+
T Consensus 194 ~~~~~~--------~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~ 231 (1073)
T 1a9x_A 194 RGLDLS--------PTKELLIDESLIGWKEYEMEVVRDKNDNCIIV 231 (1073)
T ss_dssp HHHHHC--------TTSCEEEEECCTTSEEEEEEEEECTTCCEEEE
T ss_pred HHHhhC--------CCCcEEEEEccCCCeEEEEEEEEeCCCCEEEE
Confidence 765421 23469999999976899999999988766544
No 44
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.21 E-value=5.5e-06 Score=83.96 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +++.+.+..++ +|+|+||....++| ||.+..+.+|+.++++
T Consensus 102 dK~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~~-~P~vvKp~~~~~g~----Gv~~v~~~~el~~~~~ 167 (422)
T 2xcl_A 102 SKQFAKDLMKKY-----D--IPTAEYETFTSF--DEAKAYVQEKG-APIVIKADGLAAGK----GVTVAMTEEEAIACLH 167 (422)
T ss_dssp CHHHHHHHHHHT-----T--CCBCCEEEESCH--HHHHHHHHHHC-SSEEEEESSCGGGT----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCeEEECCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 446678889998 8 566688887765 78877777786 89999998876666 8999999999999988
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
+++..... + ..-..++||++++ +.|+.+.+..|.
T Consensus 168 ~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~dG 201 (422)
T 2xcl_A 168 DFLEDEKF--G--DASASVVIEEYLS-GEEFSLMAFVKG 201 (422)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred HHHhhhhc--c--CCCCeEEEEECCc-CcEEEEEEEEcC
Confidence 88652211 1 0124699999999 899999998864
No 45
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.20 E-value=3.8e-06 Score=86.28 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+..|++|+++ | ||++++. .+++. +++.+.+..++ +|+|+||....++| ||.+..+.+|+.++
T Consensus 120 dK~~~k~~l~~~-----G--ip~p~~~~~~~~~~--~~~~~~~~~~g-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~ 185 (461)
T 2dzd_A 120 DKVKARHAAVNA-----G--IPVIPGSDGPVDGL--EDVVAFAEAHG-YPIIIKAALGGGGR----GMRIVRSKSEVKEA 185 (461)
T ss_dssp SHHHHHHHHHHT-----T--CCBCCBCSSCCSSH--HHHHHHHHHHC-SCEEEEESTTCSSS----SEEEECCGGGHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCCcccCcCCH--HHHHHHHHhcC-CcEEEEeCCCCCCC----CEEEeCCHHHHHHH
Confidence 446788999998 8 4555765 45554 78877777886 89999999877666 89999999999988
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEE
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTIS 131 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il 131 (423)
++++........+ -..++||++++..+|+.+.+..|..|.++.
T Consensus 186 ~~~~~~~~~~~~~----~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~ 228 (461)
T 2dzd_A 186 FERAKSEAKAAFG----SDEVYVEKLIENPKHIEVQILGDYEGNIVH 228 (461)
T ss_dssp HHHHHHHHHHHTS----CCCEEEEECCCSCEEEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHhhcC----CCcEEEEECCCCCeEEEEEEEEcCCCCEEE
Confidence 8877543111001 146999999997789999999998776653
No 46
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.19 E-value=6.3e-06 Score=84.51 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +++.+.+..++ +|+|+||....++| ||.+..|.+|+.++++
T Consensus 123 dK~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~~-~PvVvKp~~~~gg~----Gv~~v~~~~el~~~~~ 188 (451)
T 2yrx_A 123 SKAFAKELMKKY-----G--IPTADHAAFTSY--EEAKAYIEQKG-APIVIKADGLAAGK----GVTVAQTVEEALAAAK 188 (451)
T ss_dssp CHHHHHHHHHHT-----T--CCBCCEEEESCH--HHHHHHHHHHC-SSEEEEECC----C----CEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCeEEECCH--HHHHHHHHhcC-CcEEEEeCCCCCCC----cEEEECCHHHHHHHHH
Confidence 345678888888 8 566688887766 78877777786 89999999876666 8999999999999988
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+++..... + ..-..++||++++ +.|+.+.+..|..
T Consensus 189 ~~~~~~~~--g--~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 189 AALVDGQF--G--TAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp HHHHHSCC--B--TTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhcccc--C--CCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 87652110 1 1135699999999 8899999888643
No 47
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.19 E-value=6.5e-06 Score=83.36 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +++.+.+..++ +|+|+||....++| ||.+..|.+|+.++++
T Consensus 101 dK~~~~~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~~-~P~vvKp~~~~gg~----Gv~~v~~~~el~~~~~ 166 (417)
T 2ip4_A 101 SKAFAKGLMERY-----G--IPTARYRVFREP--LEALAYLEEVG-VPVVVKDSGLAAGK----GVTVAFDLHQAKQAVA 166 (417)
T ss_dssp CHHHHHHHHHHT-----C--CCBCCEEEESSH--HHHHHHHHHHC-SSEEEECTTSCSST----TCEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCeeeeCCH--HHHHHHHHHcC-CCEEEEECCCCCCC----CEEEeCCHHHHHHHHH
Confidence 345678899998 8 566688887765 78877777786 89999998766555 8999999999999988
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
+++.... + ..++||++++ +.|+.+.+..|.
T Consensus 167 ~~~~~~~---~-----~~~lvEe~i~-g~E~sv~~~~~G 196 (417)
T 2ip4_A 167 NILNRAE---G-----GEVVVEEYLE-GEEATVLALTDG 196 (417)
T ss_dssp HHTTSSS---C-----CCEEEEECCC-SCEEEEEEEESS
T ss_pred HHHhhcc---C-----CeEEEEECcc-CcEEEEEEEEeC
Confidence 8762111 1 4699999999 789999988853
No 48
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.18 E-value=3.2e-06 Score=96.55 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceE--EeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQ--VTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~--~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+.+|++|+++ | ||++++. .+++. +++.+++..++ ||||+||....|+| ||.+..+.+|+.++
T Consensus 134 DK~~~k~~l~~~-----G--IPvp~~~~~~v~s~--eea~~~a~~ig-yPvVVKp~~g~GG~----Gv~iv~s~eEL~~a 199 (1165)
T 2qf7_A 134 NKVAARNLAISV-----G--VPVVPATEPLPDDM--AEVAKMAAAIG-YPVMLKASWGGGGR----GMRVIRSEADLAKE 199 (1165)
T ss_dssp SHHHHHHHHHHT-----T--CCBC--------------------------------------------------------
T ss_pred CHHHHHHHHHHc-----C--CCCCCeeCcCCCCH--HHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHHHHH
Confidence 346788999998 8 5665776 45555 77877788886 99999999877777 78999999999888
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
++++........ .-..++||++++.++|+.+.+..|..|.++.+
T Consensus 200 ~~~~~~~a~~~f----g~~~vlVEefI~gg~EisV~vl~D~~G~vv~l 243 (1165)
T 2qf7_A 200 VTEAKREAMAAF----GKDEVYLEKLVERARHVESQILGDTHGNVVHL 243 (1165)
T ss_dssp ------------------------CCCSSEEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHhhc----CCCcEEEEEeccCCcEEEEEEEEcCCCcEEEE
Confidence 777654221100 12468999999988999999999988766543
No 49
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.18 E-value=7.1e-06 Score=83.17 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | ||++++..+++. +++.+.+..++ +|+|+||....++| ||.+..|.+|+.++++
T Consensus 102 dK~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~~-~PvvvKp~~g~gg~----Gv~~v~~~~el~~~~~ 167 (424)
T 2yw2_A 102 SKAFAKTFMKKY-----G--IPTARYEVFTDF--EKAKEYVEKVG-APIVVKADGLAAGK----GAVVCETVEKAIETLD 167 (424)
T ss_dssp CHHHHHHHHHHT-----T--CCBCCEEEESCH--HHHHHHHHHHC-SSEEEEESSCCTTC----SEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCeEEECCH--HHHHHHHHHcC-CcEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 345678888888 8 566688887765 78877777886 89999998876666 8999999999999988
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
+++..... + ..-..++||++++ +.|+.+.+..|.
T Consensus 168 ~~~~~~~~--g--~~~~~~lvEe~i~-g~E~sv~~~~~G 201 (424)
T 2yw2_A 168 RFLNKKIF--G--KSSERVVIEEFLE-GEEASYIVMING 201 (424)
T ss_dssp HHHTSCTT--G--GGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred HHHhhhhc--c--CCCCeEEEEECCC-CcEEEEEEEEcC
Confidence 88652211 1 0124699999999 889999988864
No 50
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.12 E-value=1e-05 Score=82.84 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCc-EEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSR-LVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~p-vVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
-+..|++|+++ | ||++++..+++. +++.+.+..++ +| +|+||....++| ||.+..+.+|+.++++
T Consensus 129 K~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~~~~~~g-~P~vvvKp~~~~gg~----Gv~~v~~~~el~~~~~ 194 (452)
T 2qk4_A 129 KRFAKEFMDRH-----G--IPTAQWKAFTKP--EEACSFILSAD-FPALVVKASGLAAGK----GVIVAKSKEEACKAVQ 194 (452)
T ss_dssp HHHHHHHHHHT-----T--CCBCCEEEESSH--HHHHHHHHHCS-SCEEEEEESBC---C----CEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHC-----C--CCCCCeEEECCH--HHHHHHHHhCC-CCeEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 35678888888 8 566688887765 78877777886 89 999998776665 8999999999999988
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
+++..... + ..-..++||++++ +.|+.+.+..|.
T Consensus 195 ~~~~~~~~--g--~~~~~~lvEe~i~-G~E~sv~~~~dG 228 (452)
T 2qk4_A 195 EIMQEKAF--G--AAGETIVIEELLD-GEEVSCLCFTDG 228 (452)
T ss_dssp HHTTC-----------CCEEEEECCC-SEEEEEEEEECS
T ss_pred HHHhhhhc--c--CCCCeEEEEECCC-CCeEEEEEEECC
Confidence 87652211 1 0124699999999 899999988853
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.09 E-value=7.6e-05 Score=77.33 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 6 IREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 6 L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
.+-+..|++|+++ | +|++++..+++. +++.+++..+| +|||+||..-.|++ ||.+..+.+|+.+++
T Consensus 138 ~DK~~~k~~l~~~-----G--Ipvp~~~~v~s~--ee~~~~~~~lg-~PvVVKP~~g~gg~----Gv~iv~~~eel~~a~ 203 (474)
T 3vmm_A 138 RDKNKMRDAFNKA-----G--VKSIKNKRVTTL--EDFRAALEEIG-TPLILKPTYLASSI----GVTLITDTETAEDEF 203 (474)
T ss_dssp TCHHHHHHHHHHT-----T--SCCCCEEEECSH--HHHHHHHHHSC-SSEEEEESSCCTTT----TCEEECCTTSHHHHH
T ss_pred hCHHHHHHHHHHc-----C--CCCCCeEEECCH--HHHHHHHHHcC-CCEEEEECCCCcCc----eEEEECCHHHHHHHH
Confidence 4567889999999 8 566688888776 88888888996 99999998876666 788888888888887
Q ss_pred HHHhccchhccCCC--CCceeeEEeeecCCC
Q 014514 86 KGRLGTEVEMGGCK--GPITTFIVEPFVPHN 114 (423)
Q Consensus 86 ~~~~~~~~~~~~~~--~~v~~vLVe~~v~~~ 114 (423)
+++.........+. ..-..+|||++++..
T Consensus 204 ~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 204 NRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp HHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred HHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 77654221100000 112679999999944
No 52
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.09 E-value=2.1e-05 Score=78.85 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHh----HHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSE----LTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVA 82 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~e----a~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~ 82 (423)
+-+..|++|+++ | ||+|++..+++. ++ +.+++..++ +|+||||....+++ ||.+..+.+++.
T Consensus 135 DK~~~k~~l~~~-----G--ip~p~~~~~~~~--~~~~~~~~~~~~~~g-~PvvVKP~~~~~s~----Gv~~v~~~~el~ 200 (377)
T 1ehi_A 135 DKALTKELLTVN-----G--IRNTKYIVVDPE--SANNWSWDKIVAELG-NIVFVKAANQGSSV----GISRVTNAEEYT 200 (377)
T ss_dssp SHHHHHHHHHTT-----T--CCCCCEEEECTT--GGGGCCHHHHHHHHC-SCEEEEESSCCTTT----TEEEECSHHHHH
T ss_pred CHHHHHHHHHHc-----C--CCCCCEEEEecc--ccchHHHHHHHHhcC-CCEEEEeCCCCCCc----CEEEeCCHHHHH
Confidence 456778888888 8 566688888765 32 445556676 89999999876555 788999999999
Q ss_pred HHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 83 EFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
.++++.... -..+|||++++..+|+.+++..|..
T Consensus 201 ~a~~~~~~~----------~~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 201 EALSDSFQY----------DYKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp HHHHHHTTT----------CSCEEEEECCCCSCEEEEEEEESSS
T ss_pred HHHHHHHhc----------CCcEEEEcCCCCCceEEEEEEcCCC
Confidence 888775321 1368999999943899999998764
No 53
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=97.98 E-value=1.5e-05 Score=76.86 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHh-hccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTN-KEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFV 85 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~-aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~ 85 (423)
+-+..|++|+++ | ||+|++.++++. +++.. .+..++ +|+|+||....+++ ||.+..+.+++.+++
T Consensus 97 dK~~~~~~l~~~-----G--ip~p~~~~~~~~--~~~~~~~~~~~~-~P~vvKP~~~~~s~----Gv~~v~~~~el~~~~ 162 (307)
T 3r5x_A 97 DKNISKKILRYE-----G--IETPDWIELTKM--EDLNFDELDKLG-FPLVVKPNSGGSSV----GVKIVYDKDELISML 162 (307)
T ss_dssp CHHHHHHHHHHT-----T--CCCCCEEEEESS--SCCCHHHHHHHC-SSEEEEECC----C----CCEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEEeCh--hhhhHHHHHhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHH
Confidence 446678899998 8 566688888876 34332 445675 89999998865555 788899999999888
Q ss_pred HHHhccchhccCCCCCceeeEEeeecCCCceEEEEEE
Q 014514 86 KGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~ 122 (423)
+++... -..++||++++ +.|+.+.+.
T Consensus 163 ~~~~~~----------~~~~lvee~i~-G~e~~v~v~ 188 (307)
T 3r5x_A 163 ETVFEW----------DSEVVIEKYIK-GEEITCSIF 188 (307)
T ss_dssp HHHHHH----------CSEEEEEECCC-SEEEEEEEE
T ss_pred HHHHhc----------CCCEEEECCcC-CEEEEEEEE
Confidence 776431 13689999999 699999985
No 54
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=97.85 E-value=6.1e-05 Score=74.95 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCH-----HhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDF-----SELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQV 81 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~-----~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~ 81 (423)
+-+..|++|+++ | ||+|++..+++.+. +++.+.+..++ +|+||||....+++ ||.+..+.+++
T Consensus 129 dK~~~k~~l~~~-----G--ip~p~~~~~~~~~~~~~~~~~~~~~~~~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el 196 (364)
T 2i87_A 129 DKLVMKQLFEHR-----G--LPQLPYISFLRSEYEKYEHNILKLVNDKLN-YPVFVKPANLGSSV----GISKCNNEAEL 196 (364)
T ss_dssp SHHHHHHHHHHH-----T--CCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-SSEEEEESSCSSCT----TCEEESSHHHH
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEEechhhcccchhHHHHHHHhcC-CCEEEEeCCCCCCC----CEEEECCHHHH
Confidence 345678899998 8 56668888775411 13445556776 89999998865544 88899999999
Q ss_pred HHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 82 AEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
..+.+..... -..++||++++ +.|+.+.+..|+.
T Consensus 197 ~~a~~~~~~~----------~~~~lvEe~I~-G~E~~v~vl~~~~ 230 (364)
T 2i87_A 197 KEGIKEAFQF----------DRKLVIEQGVN-AREIEVAVLGNDY 230 (364)
T ss_dssp HHHHHHHHTT----------CSEEEEEECCC-CEEEEEEEEESSS
T ss_pred HHHHHHHHhc----------CCeEEEEeCcc-CeEEEEEEEcCCC
Confidence 8887765421 14699999999 7899999998864
No 55
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.84 E-value=3.7e-05 Score=77.97 Aligned_cols=100 Identities=22% Similarity=0.199 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+..|++|+++ | ||+|++..+++. +++.+ ..++ +|+|+||....++| ||.+..|.+|+.++++++
T Consensus 114 ~~~k~~l~~~-----g--ip~p~~~~~~~~--~~~~~--~~~g-~P~vvKp~~g~gs~----Gv~~v~~~~el~~a~~~~ 177 (425)
T 3vot_A 114 NKTRSILQQN-----G--LNTPVFHEFHTL--ADLEN--RKLS-YPLVVKPVNGFSSQ----GVVRVDDRKELEEAVRKV 177 (425)
T ss_dssp HHHHHHHHHT-----T--CCCCCEEEESSG--GGGTT--CCCC-SSEEEEESCC---------CEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-----C--CCCCceeccCcH--HHHHH--hhcC-CcEEEEECCCCCCC----CceEechHHHHHHHHHHH
Confidence 5577888888 8 566688888776 55532 4675 99999998766666 899999999999988877
Q ss_pred hccchhcc-CCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 89 LGTEVEMG-GCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 89 ~~~~~~~~-~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
........ .....-..++||++++ +.|+.+.+..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~lvEe~i~-G~e~sv~~~~~~ 214 (425)
T 3vot_A 178 EAVNQRDLNRFVHGKTGIVAEQFID-GPEFAIETLSIQ 214 (425)
T ss_dssp HHHTTSSHHHHHTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred HhhhhhhhhhhccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence 54221100 0001224699999998 679988777664
No 56
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.84 E-value=3.6e-05 Score=84.10 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhc-cccCCCcEEEeeccccCccCCcCeeEEe----CCHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE-PWLSSSRLVVKPDMLFGKRGKSGLVALN----LDLAQVAE 83 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa-~~lg~~pvVvK~qv~~g~r~k~GGV~l~----~~~ee~~~ 83 (423)
..+|++|+++ | ||++++.++++. +++.+++ ..+| +||||||....+|| ||.+. .+.+++.+
T Consensus 491 ~~tk~lL~~~-----G--IPvP~~~~~~~~--~ea~~~~~~~~g-~PvVVKP~~g~~G~----GV~iv~~~v~~~eel~~ 556 (757)
T 3ln7_A 491 VVTKKVLQKA-----G--FNVPQSVEFTSL--EKAVASYALFEN-RAVVIKPKSTNYGL----GITIFQQGVQNREDFAK 556 (757)
T ss_dssp HHHHHHHHHH-----T--CCCCCEEEESCH--HHHHHGGGGSSS-SCEEEEESSCSTTT----TCEECSSCCCCHHHHHH
T ss_pred HHHHHHHHHC-----C--cCCCCEEEECCH--HHHHHHHHHhcC-CCEEEEeCCCCCCC----CeEEecCCCCCHHHHHH
Confidence 3578999999 8 566688888765 7776665 6776 89999999876555 88887 78999988
Q ss_pred HHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 84 FVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 84 a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
+++..... + ..++||++++ +.|+.+.+.-|+
T Consensus 557 al~~a~~~-----~-----~~vlVEefI~-G~Ei~v~Vlggk 587 (757)
T 3ln7_A 557 ALEIAFRE-----D-----KEVMVEDYLV-GTEYRFFVLGDE 587 (757)
T ss_dssp HHHHHHHH-----C-----SSEEEEECCC-SEEEEEEEETTE
T ss_pred HHHHHHhc-----C-----CcEEEEEcCC-CcEEEEEEECCE
Confidence 87765421 1 3489999998 689888776443
No 57
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.83 E-value=5.7e-05 Score=74.49 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | +|+|++..+++. +++. + ..++ +|+||||....+++ ||.+..+.+++..+.+
T Consensus 132 dK~~~k~~l~~~-----G--ip~p~~~~~~~~--~~~~-~-~~~~-~PvvvKP~~~~~s~----Gv~~v~~~~el~~a~~ 195 (343)
T 1e4e_A 132 DKSLTYIVAKNA-----G--IATPAFWVINKD--DRPV-A-ATFT-YPVFVKPARSGSSF----GVKKVNSADELDYAIE 195 (343)
T ss_dssp SHHHHHHHHHHT-----T--CBCCCEEEECTT--CCCC-G-GGSC-SCEEEEESSCCTTT----TCEEECSGGGHHHHHH
T ss_pred CHHHHHHHHHHC-----C--CCcCCEEEEech--hhhh-h-hccC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHH
Confidence 345678888888 8 566688888766 3332 1 5675 89999998865555 7888899999888877
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
+.... -..+|||++++ ++|+.+.+..|..+
T Consensus 196 ~~~~~----------~~~~lvEe~I~-G~E~~v~vl~~~~~ 225 (343)
T 1e4e_A 196 SARQY----------DSKILIEQAVS-GCEVGCAVLGNSAA 225 (343)
T ss_dssp HHTTT----------CSSEEEEECCC-SEEEEEEEEEETTC
T ss_pred HHHhc----------CCcEEEEeCcC-CeEEEEEEEeCCCC
Confidence 65321 13589999998 79999999988755
No 58
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.80 E-value=3.6e-05 Score=77.29 Aligned_cols=97 Identities=19% Similarity=0.088 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
-+..|++|+++ | ||++++..+++.+...+..+...++ +|+||||....+++ ||.+..+.+|+..+++.
T Consensus 152 K~~~k~~l~~~-----G--Ip~p~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~----GV~~v~~~~eL~~a~~~ 219 (373)
T 3lwb_A 152 KEFTKKLLAAD-----G--LPVGAYAVLRPPRSTLHRQECERLG-LPVFVKPARGGSSI----GVSRVSSWDQLPAAVAR 219 (373)
T ss_dssp HHHHHHHHHHT-----T--CCBCCEEEECTTCCCCCHHHHHHHC-SCEEEEESBCSTTT----TCEEECSGGGHHHHHHH
T ss_pred HHHHHHHHHHc-----C--cCCCCEEEEECcccchhHHHHHhcC-CCEEEEeCCCCCCC----CEEEeCCHHHHHHHHHH
Confidence 45678889998 8 5666888887662111122345676 89999998765444 78889999999888776
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCC
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLG 127 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~g 127 (423)
.... -..+|||++++ ++|+.+++..|+.+
T Consensus 220 a~~~----------~~~vlVEe~I~-G~E~~v~vl~~~~~ 248 (373)
T 3lwb_A 220 ARRH----------DPKVIVEAAIS-GRELECGVLEMPDG 248 (373)
T ss_dssp HHTT----------CSSEEEEECCE-EEEEEEEEEECTTS
T ss_pred HHhc----------CCCEEEeCCCC-CeEEEEEEEECCCC
Confidence 6421 13589999999 79999999988754
No 59
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.80 E-value=1.9e-05 Score=78.85 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeecccc-CccCCcCeeEEeCCHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLF-GKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~-g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
+..|++|+++ | +|++++..+++. ++ ....++ +|+|+||.... +++ ||.+..+.+++.++++
T Consensus 102 ~~~~~~l~~~-----g--ip~p~~~~~~~~--~~---~~~~~~-~P~vvKp~~~~y~g~----Gv~~v~~~~el~~~~~- 163 (380)
T 3ax6_A 102 FVQKEFLKKN-----G--IPVPEYKLVKDL--ES---DVREFG-FPVVQKARKGGYDGR----GVFIIKNEKDLENAIK- 163 (380)
T ss_dssp HHHHHHHHHT-----T--CCCCCEEECSSH--HH---HHHTTC-SSEEEEESCCC---------EEEECSGGGGGGCCC-
T ss_pred HHHHHHHHHc-----C--CCCCCeEEeCCH--HH---HHHhcC-CCEEEEecCCCCCCC----CeEEECCHHHHHHHhc-
Confidence 4578888888 8 566688877665 55 345665 89999998865 555 8888888876543211
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceEEe
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISF 132 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~il~ 132 (423)
..++||++++.+.|+.+.+..|..|.+..+
T Consensus 164 ---------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~ 193 (380)
T 3ax6_A 164 ---------------GETYLEEFVEIEKELAVMVARNEKGEIACY 193 (380)
T ss_dssp ---------------SSEEEEECCCEEEEEEEEEEECSSCCEEEE
T ss_pred ---------------CCEEEEeccCCCeeEEEEEEECCCCCEEEE
Confidence 458999999978999999999877655444
No 60
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.69 E-value=0.00019 Score=71.77 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | +|+|++..+++.+.+++.+ +..++ +|+||||....+++ ||.+..+.+|+.++.+
T Consensus 149 DK~~~k~~l~~~-----G--ip~p~~~~~~~~~~~~~~~-~~~lg-~PvvVKP~~g~ss~----Gv~~v~~~~el~~a~~ 215 (367)
T 2pvp_A 149 NKYLTKLYAKDL-----G--IKTLDYVLLNEKNRANALD-LMNFN-FPFIVKPSNAGSSL----GVNVVKEEKELIYALD 215 (367)
T ss_dssp SHHHHHHHHHHH-----T--CBCCCCEEECTTTGGGHHH-HCCSC-SCEEEEESSCCTTT----TCEEESSTTSHHHHHH
T ss_pred CHHHHHHHHHHC-----C--cCCCCEEEEeCCchHHHHH-HhccC-CCEEEEECCCCCCC----CEEEECCHHHHHHHHH
Confidence 345678999999 8 5666888887763236655 66776 89999998765444 7888888888888777
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEE
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYY 118 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Ely 118 (423)
+.... -..+|||++++..+|+.
T Consensus 216 ~~~~~----------~~~vlVEe~I~G~~E~s 237 (367)
T 2pvp_A 216 SAFEY----------SKEVLIEPFIQGVKEYN 237 (367)
T ss_dssp HHTTT----------CSCEEEEECCTTCEEEE
T ss_pred HHHhc----------CCcEEEEeCCCCCceee
Confidence 65421 13699999999438954
No 61
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.68 E-value=0.00019 Score=70.19 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVK 86 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~ 86 (423)
+-+..|++|+++ | +|+|++..+++. ++ ++. .++ +|+|+||....+++ ||.+..+.+++..+.+
T Consensus 118 dK~~~k~~l~~~-----G--ip~p~~~~~~~~--~~--~~~-~~g-~PvvvKP~~g~~s~----Gv~~v~~~~el~~a~~ 180 (322)
T 2fb9_A 118 DKDLSKRVLAQA-----G--VPVVPWVAVRKG--EP--PVV-PFD-PPFFVKPANTGSSV----GISRVERFQDLEAALA 180 (322)
T ss_dssp CHHHHHHHHHHT-----T--CCCCCEEEEETT--SC--CCC-CSC-SCEEEEETTCCTTT----TCEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-----C--CCCCCEEEEECc--hh--hhh-ccC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHH
Confidence 345678889988 8 566688888776 33 122 675 89999998865444 8888999999988877
Q ss_pred HHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 87 GRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
..... -..+|||++++..+|+.+++..|+.
T Consensus 181 ~~~~~----------~~~vlvEe~I~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 181 LAFRY----------DEKAVVEKALSPVRELEVGVLGNVF 210 (322)
T ss_dssp HHTTT----------CSEEEEEECCSSCEEEEEEEESSSS
T ss_pred HHHhc----------CCeEEEEeCCCCCeeEEEEEEeCCC
Confidence 66421 1469999999943899999987764
No 62
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.68 E-value=9.3e-05 Score=72.04 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhc--cccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKE--PWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEF 84 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa--~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a 84 (423)
+-+..|++|+++ || |+|++.. +. +++.+.. ..++ +|+|+||....+++ ||.+..+.+++.++
T Consensus 114 dK~~~~~~l~~~-----gi--p~p~~~~--~~--~~~~~~~~~~~~~-~P~vvKp~~g~g~~----gv~~v~~~~el~~~ 177 (331)
T 2pn1_A 114 DKYTMYEYCLRQ-----GI--AHARTYA--TM--ASFEEALAAGEVQ-LPVFVKPRNGSASI----EVRRVETVEEVEQL 177 (331)
T ss_dssp BHHHHHHHHHHH-----TC--CCCCEES--SH--HHHHHHHHTTSSC-SCEEEEESBC----------------------
T ss_pred CHHHHHHHHHHc-----CC--CCCcEEe--cH--HHhhhhhhcccCC-CCEEEEeCCCCCCC----CeEEeCCHHHHHHH
Confidence 345678889998 85 5557543 22 5555443 4675 89999998765544 78888888887665
Q ss_pred HHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEc-CCCceE
Q 014514 85 VKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSD-RLGCTI 130 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D-~~gp~i 130 (423)
++. ...++||++++ +.|+.+.+..| ..|.++
T Consensus 178 ~~~--------------~~~~lvee~i~-G~e~~v~~~~d~~~G~~~ 209 (331)
T 2pn1_A 178 FSK--------------NTDLIVQELLV-GQELGVDAYVDLISGKVT 209 (331)
T ss_dssp -------------------CEEEEECCC-SEEEEEEEEECTTTCCEE
T ss_pred HHh--------------CCCeEEEecCC-CcEEEEEEEEecCCCeEE
Confidence 332 13589999999 59999999999 666554
No 63
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.64 E-value=0.00015 Score=69.36 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHh--------hccccCCCcEEEeeccccCccCCcCeeEEeCCH
Q 014514 7 REYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTN--------KEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDL 78 (423)
Q Consensus 7 ~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~--------aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ 78 (423)
+-+..|++|+++ | +|+|++..+++. ++.+ ....++ +|+|+||....+++ ||.+..+.
T Consensus 96 dK~~~~~~l~~~-----g--i~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~-~p~vvKP~~g~~~~----gv~~v~~~ 160 (306)
T 1iow_A 96 DKLRSKLLWQGA-----G--LPVAPWVALTRA---EFEKGLSDKQLAEISALG-LPVIVKPSREGSSV----GMSKVVAE 160 (306)
T ss_dssp CHHHHHHHHHHT-----T--CCBCCEEEEEHH---HHHHCCCTHHHHHHHTTC-SSEEEEETTCCTTT----TCEEESSG
T ss_pred CHHHHHHHHHHC-----C--CCCCCeEEEchh---hhhccchhhhhhHHhccC-CCEEEEeCCCCCCC----CEEEeCCH
Confidence 345678888888 8 566688777653 4443 445675 89999998865555 78888899
Q ss_pred HHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEE
Q 014514 79 AQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIV 122 (423)
Q Consensus 79 ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~ 122 (423)
+++.++++++... -..++||++++ +.|+.+.+.
T Consensus 161 ~el~~~~~~~~~~----------~~~~lvee~i~-g~e~~v~~~ 193 (306)
T 1iow_A 161 NALQDALRLAFQH----------DEEVLIEKWLS-GPEFTVAIL 193 (306)
T ss_dssp GGHHHHHHHHTTT----------CSEEEEEECCC-CCEEEEEEE
T ss_pred HHHHHHHHHHHhh----------CCCEEEEeCcC-CEEEEEEEE
Confidence 9988887766421 14699999999 789999887
No 64
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.61 E-value=3.2e-05 Score=73.06 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
-+..+++|+++ | +|+|++..+++. +++.+.+..++ +|+|+||....+++ ||.+..+.+++.++.++
T Consensus 89 K~~~~~~l~~~-----g--i~~p~~~~~~~~--~~~~~~~~~~~-~p~vvKp~~g~~~~----gv~~v~~~~el~~~~~~ 154 (280)
T 1uc8_A 89 KWATSVALAKA-----G--LPQPKTALATDR--EEALRLMEAFG-YPVVLKPVIGSWGR----LLAXXXXXXXXXXXXXX 154 (280)
T ss_dssp HHHHHHHHHHT-----T--CCCCCEEEESSH--HHHHHHHHHHC-SSEEEECSBCCBCS----HHHHHHHHHC-------
T ss_pred HHHHHHHHHHc-----C--cCCCCeEeeCCH--HHHHHHHHHhC-CCEEEEECCCCCcc----cceecccccccchhhhh
Confidence 45678888888 8 566688888765 77777777776 89999998865444 77777777777766655
Q ss_pred HhccchhccCCCCCceeeEEeeecCC-CceEEEEEE
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPH-NQEYYLSIV 122 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~-~~Elylgi~ 122 (423)
+. ... . ..-..++||++++. +.|+.+.+.
T Consensus 155 ~~--~~~-~---~~~~~~lvqe~i~~~~~e~~v~v~ 184 (280)
T 1uc8_A 155 KE--VLG-G---FQHQLFYIQEYVEKPGRDIRVFVV 184 (280)
T ss_dssp --------C---TTTTCEEEEECCCCSSCCEEEEEE
T ss_pred Hh--hhc-c---cCCCcEEEEeccCCCCceEEEEEE
Confidence 41 010 0 01246999999996 678777765
No 65
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.36 E-value=0.00043 Score=69.22 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
.-.|++|+++ || |+++. +++. +++ + +|+||||....+|| ||.+..|.+|+.++++++
T Consensus 126 ~~~k~~l~~~-----GI--ptp~~--~~~~--~e~-------~-~PvVVK~~~~a~Gk----Gv~v~~s~ee~~~a~~~~ 182 (361)
T 2r7k_A 126 SLEGKLLREA-----GL--RVPKK--YESP--EDI-------D-GTVIVKFPGARGGR----GYFIASSTEEFYKKAEDL 182 (361)
T ss_dssp HHHHHHHHHT-----TC--CCCCE--ESSG--GGC-------C-SCEEEECSCCCC-------EEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----Cc--CCCCE--eCCH--HHc-------C-CCEEEeeCCCCCCC----CEEEECCHHHHHHHHHHH
Confidence 3457889998 85 55553 3443 443 3 79999999887777 999999999999999888
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
+..... + ......++||++++ +.|+.+.....+.
T Consensus 183 ~~~~~~--~-~~~~~~viIEEfl~-G~e~s~~~f~~~~ 216 (361)
T 2r7k_A 183 KKRGIL--T-DEDIANAHIEEYVV-GTNFCIHYFYSPL 216 (361)
T ss_dssp HHTTSC--C-HHHHHHCEEEECCC-SEEEEEEEEEETT
T ss_pred Hhcccc--c-cCCCCeEEEEeccc-eEEeeEEEEeccc
Confidence 753211 1 01124589999999 7787644445544
No 66
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=97.14 E-value=0.0019 Score=63.85 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=72.1
Q ss_pred CCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCC--CCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCch
Q 014514 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANF 344 (423)
Q Consensus 268 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~--a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~ 344 (423)
..|+||+++-.|+++...+|.+...|. -..-++-+|++ ++- .+.+.++.+.+ ||++++|++.. .+|+.+
T Consensus 167 ~~G~vgivSqSG~l~~~i~~~~~~~g~--G~S~~VsiGn~~~~d~-~~~D~l~~~~~----Dp~T~~I~l~gEi~g~~e- 238 (334)
T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTTD--GVYEGVAIGGDRYPGS-TFMDHVLRYQD----TPGVKMIVVLGEIGGTEE- 238 (334)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSS--CEEEEEECCSSSSCSS-CHHHHHHHHHT----CTTCCEEEEEEESSSSHH-
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhcCC--CeEEEEECCCCccCCC-CHHHHHHHHhc----CCCCCEEEEEEecCChHH-
Confidence 479999999999999999999988754 36778999998 554 47788888887 99999888774 677654
Q ss_pred hHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 014514 345 TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
Q Consensus 345 ~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~ 382 (423)
+.+++++++.. .+|||++...|.++.
T Consensus 239 -------~~~~~~~r~~~-----~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 239 -------YKICRGIKEGR-----LTKPIVCWCIGTCAT 264 (334)
T ss_dssp -------HHHHHHHHTTS-----CCSCEEEEEECTTCC
T ss_pred -------HHHHHHHHhhc-----CCCCEEEEEcCCCcc
Confidence 23445666532 479999996665543
No 67
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=96.94 E-value=0.0032 Score=65.22 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=91.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCC-----CHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-----NEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 343 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a-----~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~ 343 (423)
.|+||+++-.|+++...+|.+... |.-...++-+|+++ ..-.+.+.++.+.+ ||++++|++..=+ +
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~~--g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~----Dp~T~~I~ly~E~-~-- 182 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALA--GEGITHAIGLGGRDLSREVGGISALTALEMLSA----DEKSEVLAFVSKP-P-- 182 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHT--TCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHT----CTTCCEEEEEESC-C--
T ss_pred CCCEEEEeccHHHHHHHHHHHHHc--CCCceEEEEcCCCccccccCCCCHHHHHHHHhc----CCCCCEEEEEEec-C--
Confidence 789999999999999999999986 44467889999983 55668888988888 9999988876632 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 344 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 344 ~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+.++ +.++++.+. .+|||++...|.+... |++ +|+-.. +|++|....+.-++.
T Consensus 183 ~e~~~---~~f~~~ar~-------~~KPVV~~k~Grs~~g----~r~----~Gvirv-----~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 183 AEAVR---LKIVNAMKA-------TGKPTVALFLGYTPAV----ARD----ENVWFA-----SSLDEAARLACLLSR 236 (480)
T ss_dssp CHHHH---HHHHHHHHH-------HCSCEEEEETTCCCSS----SEE----TTEEEE-----SSHHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHh-------CCCCEEEEEeCCCCcc----ccc----CCEEEE-----CCHHHHHHHHHHHhc
Confidence 24555 666776653 2799999977765432 444 888544 799998888776654
No 68
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=96.77 E-value=0.0053 Score=59.28 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGR 88 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~ 88 (423)
+..|++|+++ || |+|++ +++. ++ ++ +|+|+||....+++ ||.+..+.+++..+++++
T Consensus 102 ~~~~~~l~~~-----gi--p~p~~--~~~~--~~-------l~-~P~vvKP~~g~~s~----Gv~~v~~~~el~~~~~~~ 158 (334)
T 2r85_A 102 NLERKWLKKA-----GI--RVPEV--YEDP--DD-------IE-KPVIVKPHGAKGGK----GYFLAKDPEDFWRKAEKF 158 (334)
T ss_dssp HHHHHHHHHT-----TC--CCCCB--CSCG--GG-------CC-SCEEEEECC----T----TCEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----CC--CCCCc--cCCh--HH-------cC-CCEEEEeCCCCCCC----CEEEECCHHHHHHHHHHH
Confidence 4567788888 85 55565 3433 32 44 89999998866555 889999999999888777
Q ss_pred hccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC
Q 014514 89 LGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL 126 (423)
Q Consensus 89 ~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~ 126 (423)
...... .....++||++++ +.|+.+.+..+..
T Consensus 159 ~~~~~~-----~~~~~~lvee~i~-G~e~~~~~~~~~~ 190 (334)
T 2r85_A 159 LGIKRK-----EDLKNIQIQEYVL-GVPVYPHYFYSKV 190 (334)
T ss_dssp HCCCSG-----GGCCSEEEEECCC-CEEEEEEEEEETT
T ss_pred Hhhccc-----CCCCcEEEEeccC-CceeEEEEeecCc
Confidence 542100 0124699999999 6788766666644
No 69
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=96.70 E-value=0.0087 Score=57.83 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=82.3
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~-~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...+|.+...| .-..-++-+|+++.. -.+.+.++.+.+ ||++++|++.. .++ +..+
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~t~~I~l~~E~~~--~~~~ 215 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQAG--LGTTTTVGIGGDPVIGTTFKDLLPLFNE----DPETEAVVLIGEIGG--SDEE 215 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSCCSSCHHHHHHHHHT----CTTCCEEEEEECSSS--SHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC--CCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCC--CHHH
Confidence 6999999999999999999998864 446788999999952 457788888888 99999888777 433 2233
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH----------------HHHhhccccCCceeecCCCCCHHH
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA----------------KMRALGEELGIPLEVYGPEATMTG 410 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~----------------~l~~~~~~~gip~~~~~~~~~~~~ 410 (423)
.+ ...+++ . .+|||++...|.++..+++ ....+..++|+... ++++|
T Consensus 216 ~~---~~~~~~---~------~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~~-----~~~~e 278 (288)
T 1oi7_A 216 EA---AAWVKD---H------MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVA-----DTIDE 278 (288)
T ss_dssp HH---HHHHHH---H------CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCBC-----SSHHH
T ss_pred HH---HHHHHh---c------CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeEe-----CCHHH
Confidence 33 223332 1 3799999987766522222 12223334787654 77777
Q ss_pred HHHHHHH
Q 014514 411 ICKQAID 417 (423)
Q Consensus 411 av~~~~~ 417 (423)
....+.+
T Consensus 279 l~~~~~~ 285 (288)
T 1oi7_A 279 IVELVKK 285 (288)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 70
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=96.68 E-value=0.0037 Score=61.01 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=72.5
Q ss_pred CCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchh
Q 014514 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 345 (423)
Q Consensus 268 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~-~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~ 345 (423)
..|+||+++-.|+++...+|.+...| .-...++-+|+++. .-.+.+.++.+.+ ||++++|++.. .+|- .+
T Consensus 151 ~~G~va~vSqSG~l~~~~~~~~~~~g--~G~S~~vs~G~~~~~~~~~~d~l~~~~~----Dp~T~~I~l~~E~~g~--~e 222 (305)
T 2fp4_A 151 KKGRIGIVSRSGTLTYEAVHQTTQVG--LGQSLCVGIGGDPFNGTDFTDCLEIFLN----DPATEGIILIGEIGGN--AE 222 (305)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSCCHHHHHHHHHH----CTTCCEEEEEEESSSS--HH
T ss_pred CCCCEEEEecchHHHHHHHHHHHhcC--CCeeEEeccCCCcCCCCCHHHHHHHHhc----CCCCcEEEEEEecCCc--hh
Confidence 36999999999999999999998864 44778899999984 4567888888888 99999888877 4442 23
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 346 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 346 ~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
+-+ +.++++.++. .++|||++...|.+.
T Consensus 223 ~~~---~~f~~~~~~~-----~~~KPVv~~k~G~s~ 250 (305)
T 2fp4_A 223 ENA---AEFLKQHNSG-----PKSKPVVSFIAGLTA 250 (305)
T ss_dssp HHH---HHHHHHHSCS-----TTCCCEEEEEECTTC
T ss_pred hHH---HHHHHHHHHh-----cCCCCEEEEEecCCc
Confidence 334 5566554332 137999998655443
No 71
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=96.60 E-value=0.0077 Score=58.47 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=82.3
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~-~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...+|.+...| .-..-++-+|+++.. -.+.+.++.+.+ ||++++|++.. .++ +..+
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~~--~~~~ 222 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQG--IGQSTVIGIGGDPIVGLSFTEALKLFQE----DPQTEALVLIGEIGG--DMEE 222 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEECSSS--SHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCeeEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCC--CHHH
Confidence 6999999999999999999998864 446788999999952 357788888887 99999888877 433 2233
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH----------------HHHhhccccCCceeecCCCCCHHH
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA----------------KMRALGEELGIPLEVYGPEATMTG 410 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~----------------~l~~~~~~~gip~~~~~~~~~~~~ 410 (423)
.+ ..+++ ... .+|||++...|.++..+++ ...++..++|+... ++++|
T Consensus 223 ~~---~~~~~---~~~-----~~KPVv~~k~G~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~v-----~~~~e 286 (297)
T 2yv2_A 223 RA---AEMIK---KGE-----FTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVA-----ETPFE 286 (297)
T ss_dssp HH---HHHHH---TTS-----CCSCEEEEESCCC------------------CSHHHHHHHHHTTTCEEE-----SSGGG
T ss_pred HH---HHHHH---hcc-----CCCCEEEEEeCCCCccccccCCccccccCCCCCHHHHHHHHHHcCCeEe-----CCHHH
Confidence 23 22222 211 4799999987776633322 12233344787654 66666
Q ss_pred HHHHHHH
Q 014514 411 ICKQAID 417 (423)
Q Consensus 411 av~~~~~ 417 (423)
....+.+
T Consensus 287 l~~~~~~ 293 (297)
T 2yv2_A 287 VPELVRK 293 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 72
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=96.36 E-value=0.0083 Score=58.15 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=67.0
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~-~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
.|+|++++-.|+++...+|.+...| .-...++-+|+++.. -.+.+.++.+.+ ||++++|++.. .+|-. .+
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~g~~--~~ 221 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKAG--FGVSTCVGIGGDPIVGLRYKEVLDLFEK----DDETEAIVMIGEIGGGA--EE 221 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEEESSSSH--HH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC--CCeEEEEeeCCCCCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCCH--HH
Confidence 6999999999999999999999864 446788999999952 457788888887 99999888877 44422 22
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
.+ . +.+++ .+|||++...|.++
T Consensus 222 ~~---~---~~~~~-------~~KPVv~~k~G~~~ 243 (294)
T 2yv1_A 222 EA---A---KFIEK-------MKKPVIGYIAGQSA 243 (294)
T ss_dssp HH---H---HHHTT-------CSSCEEEEEECC--
T ss_pred HH---H---HHHHh-------CCCCEEEEEecCCC
Confidence 22 1 22222 37999998777655
No 73
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=96.21 E-value=0.011 Score=57.13 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=83.1
Q ss_pred CCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhH
Q 014514 269 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 346 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~-~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~ 346 (423)
.|+||+++-.|+++...+|.+... |.-..-++-+||++. .-.+.+.++.+.+ ||++++|++.. .+| +..+
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~--g~G~s~~vs~G~~~~~~~~~~d~l~~l~~----D~~t~~I~l~~E~~~--~~~~ 215 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDY--GFGQSTCVGIGGDPIPGSNFIDILEMFEK----DPQTEAIVMIGEIGG--SAEE 215 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHT--TCCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSS--SHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhc--CCCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCC--CHHH
Confidence 699999999999999999999886 444677888999884 3457788888888 99999888877 444 2334
Q ss_pred HhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH--------------------HHHHHHHHhhccccCCceeecCCCC
Q 014514 347 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY--------------------QTGLAKMRALGEELGIPLEVYGPEA 406 (423)
Q Consensus 347 va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~--------------------~~a~~~l~~~~~~~gip~~~~~~~~ 406 (423)
.+ +.++++ . .+|||++...|.++ +.-...|++ +|+... +
T Consensus 216 ~~---~~~~~~----~-----~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~----aGv~~~-----~ 274 (288)
T 2nu8_A 216 EA---AAYIKE----H-----VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEA----AGVKTV-----R 274 (288)
T ss_dssp HH---HHHHHH----H-----CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHH----TTCEEC-----S
T ss_pred HH---HHHHHh----c-----CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHH----CCCeEe-----C
Confidence 44 334443 1 37999988655443 112334554 888654 6
Q ss_pred CHHHHHHHHHH
Q 014514 407 TMTGICKQAID 417 (423)
Q Consensus 407 ~~~~av~~~~~ 417 (423)
+++|....+.+
T Consensus 275 ~~~el~~~~~~ 285 (288)
T 2nu8_A 275 SLADIGEALKT 285 (288)
T ss_dssp SGGGHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77766555443
No 74
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=96.18 E-value=0.013 Score=56.43 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccC-CCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLS-SSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg-~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
...+++|++. | +|+|++..+++. +++.+.....+ ++|+|+||..-.|+. ..-||.+..+.++...
T Consensus 100 ~~~~~~l~~~-----g--i~~P~~~~~~~~--~~~~~~~~~~~~~~P~vvKP~~g~g~~-~s~gv~~v~~~~~l~~---- 165 (324)
T 1z2n_X 100 EEINALLIKN-----N--IPIPNSFSVKSK--EEVIQLLQSKQLILPFIVKPENAQGTF-NAHQMKIVLEQEGIDD---- 165 (324)
T ss_dssp HHHHHHHHHT-----T--CCCSCEEEESSH--HHHHHHHHTTCSCSSEEEEESBCSSSS-GGGEEEEECSGGGGTT----
T ss_pred HHHHHHHHHC-----C--CCCCCEEEeCCH--HHHHHHHHHcCCCCCEEEeeCCCCCCc-cceeeEEEeCHHHHhh----
Confidence 4467888888 8 566688887765 66665554432 389999998744331 1237877777654221
Q ss_pred HhccchhccCCCCCceeeEEeeecCC-CceEEEEEE
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPH-NQEYYLSIV 122 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~-~~Elylgi~ 122 (423)
. -..++||++++. +.|+-+.+.
T Consensus 166 -----~--------~~~~lvqe~i~~~g~~~~v~v~ 188 (324)
T 1z2n_X 166 -----I--------HFPCLCQHYINHNNKIVKVFCI 188 (324)
T ss_dssp -----C--------CSSEEEEECCCCTTCEEEEEEE
T ss_pred -----c--------CCCEEEEEccCCCCcEEEEEEE
Confidence 1 134899999985 678777654
No 75
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=96.07 E-value=0.024 Score=55.37 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=58.0
Q ss_pred HHHHHHHhhhccCCC-CCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 11 SKRLLKEHLKRLAGL-DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 11 ak~lL~~y~~~~~GI-~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
..++|++. |+ ++|.++.....+. .+ ....+| +|+|+|+-.-+.|+ ||.+..|.++++.....+.
T Consensus 121 ~~~~l~~~-----gi~~~P~~~~~~~~~~--~~---~~~~~g-~PvVvK~~~Gs~G~----GV~lv~~~~~~~~~~~~~~ 185 (309)
T 1i7n_A 121 MVAIFKTL-----GGEKFPLIEQTYYPNH--RE---MLTLPT-FPVVVKIGHAHSGM----GKVKVENHYDFQDIASVVA 185 (309)
T ss_dssp HHHHHHHH-----CTTTSCBCCCEEESSG--GG---GSSCCC-SSEEEEESSCSTTT----TEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCCCCCCCEEeeCCh--hh---hhhccC-CCEEEEeCCCCcee----CeEEECCHHHHHHHHHHHh
Confidence 34566777 86 4464343333322 33 344565 89999987655455 8999999998877765443
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
.. . ..+++||+++.++.+.+.+.-++
T Consensus 186 ~~-----~-----~~~~vQefI~~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 186 LT-----Q-----TYATAEPFIDAKYDIRVQKIGNN 211 (309)
T ss_dssp HH-----T-----CCEEEEECCCEEEEEEEEEETTE
T ss_pred cc-----C-----CeEEEEeecCCCceEEEEEECCE
Confidence 21 1 34789999997777777666443
No 76
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=95.58 E-value=0.028 Score=55.26 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHH
Q 014514 8 EYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKG 87 (423)
Q Consensus 8 E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~ 87 (423)
=+..|++|+++ || |++.. ..++ ||+|+||....++| ||.+..|.++...
T Consensus 104 K~~~k~~l~~~-----gi--p~~~~---------------~~ig-~P~vvKp~~g~g~~----gv~~v~~~~~~~~---- 152 (363)
T 4ffl_A 104 KKKSKDYFKSI-----GV--PTPQD---------------RPSK-PPYFVKPPCESSSV----GARIIYDDKDLEG---- 152 (363)
T ss_dssp HHHHHHHHHHT-----TC--CCCCB---------------SCSS-SCEEEECSSCCTTT----TCEEEC------C----
T ss_pred HHHHHHHHHhc-----CC--CCCCc---------------eecC-CCEEEEECCCCCCc----CeEEeccHHHhhh----
Confidence 35678888888 85 54342 1344 99999998765555 7888877765321
Q ss_pred HhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcCCCceE
Q 014514 88 RLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTI 130 (423)
Q Consensus 88 ~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~gp~i 130 (423)
....+++|++++ +.|+.+.+..|..+..+
T Consensus 153 -------------~~~~~~~ee~i~-g~e~sv~~~~d~~~~~~ 181 (363)
T 4ffl_A 153 -------------LEPDTLVEEYVE-GEVVSLEVVGDGSHFAV 181 (363)
T ss_dssp -------------CCTTCEEEECCC-SEEEEEEEEEESSCEEE
T ss_pred -------------hccchhhhhhcc-CcEEEEEEEEECCeEEE
Confidence 123478999997 78999999988765443
No 77
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=95.58 E-value=0.045 Score=54.22 Aligned_cols=90 Identities=8% Similarity=-0.013 Sum_probs=57.8
Q ss_pred HHHHHHHhhhccCCC-CCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 11 SKRLLKEHLKRLAGL-DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 11 ak~lL~~y~~~~~GI-~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
...+|.+. |+ ++|.++.....+. .+ ....+| +|+|+|+-.-+.|| ||.+..|.++++.....+.
T Consensus 138 ~l~~l~~~-----gi~~~P~~~~t~~~~~--~~---~~~~~g-~PvVvK~~~Gs~G~----GV~lve~~~~~~~~~~~~~ 202 (344)
T 2p0a_A 138 LIKIFHSL-----GPEKFPLVEQTFFPNH--KP---MVTAPH-FPVVVKLGHAHAGM----GKIKVENQLDFQDITSVVA 202 (344)
T ss_dssp HHHHHHHH-----CTTTSCBCCCEEESSS--TT---CCCCSS-SSEEEEESSCCTTT----TEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHC-----CCCCCCCCCEEecCch--hh---hhhccC-CCEEEEeCCCCcee----CeEEECCHHHHHHHHHHHh
Confidence 34566777 86 4464343333332 33 344565 89999987655555 8999999998887665443
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
.. . ..+++||+++.++.+.+.+.-++
T Consensus 203 ~~-----~-----~~~~vQefI~~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 203 MA-----K-----TYATTEAFIDSKYDIRIQKIGSN 228 (344)
T ss_dssp HH-----T-----CCEEEEECCCEEEEEEEEEETTE
T ss_pred cc-----C-----CeEEEEeccCCCccEEEEEECCE
Confidence 11 1 34789999997777777666444
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=95.49 E-value=0.056 Score=59.37 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=70.1
Q ss_pred CCCcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchh
Q 014514 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 345 (423)
Q Consensus 268 l~g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a-~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~ 345 (423)
..|+||+++-.|+++...+|.+...|.| ..-++-+||++ ..-.+.+.++.+.+ ||++++|++.. .+| ..+.
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~g~G--~S~~VsiGnd~~~d~~~~D~L~~l~~----Dp~T~~Ivly~Ei~g-~~f~ 725 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRTTDG--VYEGVAIGGDRYPGSTFMDHVLRYQD----TPGVKMIVVLGEIGG-TEEY 725 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSC--EEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSS-SHHH
T ss_pred CCCcEEEEechhHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCCHHHHHHHHhh----CCCCCEEEEEEecCc-hHHH
Confidence 4799999999999999999999987543 56789999985 23457788888887 99999988887 554 2333
Q ss_pred HHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 014514 346 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
Q Consensus 346 ~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~ 382 (423)
++| +.+++.. .+|||++...|.++.
T Consensus 726 ~aA-------~~~~~~~-----~~KPVVa~kaGrsa~ 750 (829)
T 3pff_A 726 KIC-------RGIKEGR-----LTKPIVCWCIGTCAT 750 (829)
T ss_dssp HHH-------HHHHTTS-----CCSCEEEEEECSSTT
T ss_pred HHH-------HHHHhcc-----CCCCEEEEEecCcCc
Confidence 333 2333211 479999997665544
No 79
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=95.29 E-value=0.061 Score=54.58 Aligned_cols=90 Identities=14% Similarity=0.064 Sum_probs=57.6
Q ss_pred HHHHHHHhhhccCCC-CCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHh
Q 014514 11 SKRLLKEHLKRLAGL-DLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRL 89 (423)
Q Consensus 11 ak~lL~~y~~~~~GI-~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~ 89 (423)
.-.+|++. |+ ++|.++.....+. .+ ....++ +|+|+|+-.-+.|| ||.+..|.++++.....+.
T Consensus 233 ~l~ll~~~-----gi~~iP~t~~t~~~~~--~~---~i~~~g-~PvVvKp~~GS~G~----GV~lve~~~~l~~ii~~~~ 297 (422)
T 1pk8_A 233 MVRLHKKL-----GTEEFPLIDQTFYPNH--KE---MLSSTT-YPVVVKMGHAHSGM----GKVKVDNQHDFQDIASVVA 297 (422)
T ss_dssp HHHHHHHH-----CTTTSCBCCCEEESSG--GG---CCCCSS-SSEEEEESSCCTTT----TEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCCCCCCceEecCch--hh---hhhccC-CCEEEEeCCCCcee----CeEEeCCHHHHHHHHHHHh
Confidence 34556666 86 4464343333222 33 344555 89999987655555 8999999998887765543
Q ss_pred ccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 90 GTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 90 ~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
.. . ..++|||+++.++.+.+.+.-++
T Consensus 298 ~~-----~-----~~~~vQEfI~~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 298 LT-----K-----TYATAEPFIDAKYDVRVQKIGQN 323 (422)
T ss_dssp HH-----T-----SCEEEEECCCEEEEEEEEEETTE
T ss_pred cc-----C-----ceEEEEeecCCCceEEEEEECCE
Confidence 21 1 34789999997777777666444
No 80
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=94.94 E-value=0.1 Score=53.53 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=66.2
Q ss_pred CcEEEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhh
Q 014514 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAT 349 (423)
Q Consensus 270 g~I~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~ 349 (423)
|+|++++-.|+++...+|.+...| .-...++-+|++++- .+.+.++.+.+ ||++++|++..= ++.+.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g--~G~s~~vs~G~~~~~-~~~d~l~~~~~----D~~t~~I~l~~E-~i~~~----- 216 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKED--IGFSKFISVGNMADV-DFAELMEYLAD----TEEDKAIALYIE-GVRNG----- 216 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTT--CEESEEEECTTCCSS-CHHHHHHHHTT----CSSCCEEEEEES-CCSCH-----
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcC--CCeeEEEECCCcCCC-CHHHHHHHHhc----CCCCCEEEEEEe-cCCCH-----
Confidence 999999999999999999999864 446788999999864 57788888877 999998887772 12232
Q ss_pred hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 014514 350 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
Q Consensus 350 ~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~ 382 (423)
+...++.+... ++|||++...|.+..
T Consensus 217 --~~f~~~a~~~~-----~~KPVv~~k~G~~~~ 242 (457)
T 2csu_A 217 --KKFMEVAKRVT-----KKKPIIALKAGKSES 242 (457)
T ss_dssp --HHHHHHHHHHH-----HHSCEEEEECC----
T ss_pred --HHHHHHHHHhc-----CCCCEEEEEcCCCcc
Confidence 23333444432 269999987775543
No 81
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=94.35 E-value=0.051 Score=51.55 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=52.4
Q ss_pred cCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeC-CHHHHHHHHHHHhccchhccCCCCCceeeE
Q 014514 28 QICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNL-DLAQVAEFVKGRLGTEVEMGGCKGPITTFI 106 (423)
Q Consensus 28 pv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~-~~ee~~~a~~~~~~~~~~~~~~~~~v~~vL 106 (423)
|+|++..+++. +++.+....++ |+|+||..-.+++ ||.+.. +.+++..+.+.+... .-..++
T Consensus 134 ~~P~t~~~~~~--~~~~~~~~~~~--p~vvKP~~g~~g~----Gv~~v~~~~~~l~~~~~~~~~~---------~~~~~l 196 (316)
T 1gsa_A 134 LTPETLVTRNK--AQLKAFWEKHS--DIILKPLDGMGGA----SIFRVKEGDPNLGVIAETLTEH---------GTRYCM 196 (316)
T ss_dssp TSCCEEEESCH--HHHHHHHHHHS--SEEEECSSCCTTT----TCEEECTTCTTHHHHHHHHTTT---------TTSCEE
T ss_pred cCCCeEEeCCH--HHHHHHHHHcC--CEEEEECCCCCcc----cEEEecCChHHHHHHHHHHHhc---------CCceEE
Confidence 66688777665 77776666664 9999998865555 677776 777777665543210 013589
Q ss_pred EeeecCC--CceEEEEEE
Q 014514 107 VEPFVPH--NQEYYLSIV 122 (423)
Q Consensus 107 Ve~~v~~--~~Elylgi~ 122 (423)
||++++. +.|+.+.+.
T Consensus 197 vqe~i~~~~~~~~~v~~~ 214 (316)
T 1gsa_A 197 AQNYLPAIKDGDKRVLVV 214 (316)
T ss_dssp EEECCGGGGGCEEEEEEE
T ss_pred EecccCCCCCCCEEEEEE
Confidence 9999996 567665543
No 82
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=93.81 E-value=0.017 Score=56.61 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHhhhccCCCCCcCCceEEeeCCCHHhHHhhccccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhc
Q 014514 11 SKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLG 90 (423)
Q Consensus 11 ak~lL~~y~~~~~GI~ipv~~~~~~~~~~~~ea~~aa~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~ 90 (423)
-|++|++. || |+|+.+ . + +++ .++ +||+|||....++| |+.+..| +|+..+++.+
T Consensus 102 ~~~~l~~~-----Gi--p~P~~~--~-~--ee~-----~i~-~PviVKp~~g~ggk----G~~~v~~-eel~~~~~~~-- 156 (320)
T 2pbz_A 102 QDKALEGA-----GI--PRVEVV--E-P--EDA-----KPD-ELYFVRIEGPRGGS----GHFIVEG-SELEERLSTL-- 156 (320)
T ss_dssp HHHHHHHH-----TC--CBCCBC--C-S--CCC-----CSS-CCEEEECC----------------C-EECSCCCC----
T ss_pred HHHHHHHC-----Cc--CCCCee--C-H--hHc-----CcC-CcEEEEECCCCCCC----CEEEECh-HHHHHHHHhc--
Confidence 35778888 85 544654 2 3 333 465 89999988765666 8888888 7764332211
Q ss_pred cchhccCCCCCceeeEEeeecCCCceEEEEEEEcCC-CceEEe
Q 014514 91 TEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRL-GCTISF 132 (423)
Q Consensus 91 ~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~~-gp~il~ 132 (423)
. ..++||++++ +.+++.....++. |.+.++
T Consensus 157 ----------~-~~~IiEEfI~-g~~~~~~~f~~~~~g~~e~~ 187 (320)
T 2pbz_A 157 ----------E-EPYRVERFIP-GVYLYVHFFYSPILERLELL 187 (320)
T ss_dssp -------------CCEEEECCC-SCEEEEEEEEETTTTEEEEE
T ss_pred ----------C-CCEEEEeeec-eEecceeEEeccccCceeEE
Confidence 1 3589999999 6777666677765 544433
No 83
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=93.29 E-value=0.14 Score=50.56 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=50.0
Q ss_pred CCCCCcCCceEEeeCCCHHhHHhhc--cccCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCC
Q 014514 23 AGLDLQICSAQVTESTDFSELTNKE--PWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKG 100 (423)
Q Consensus 23 ~GI~ipv~~~~~~~~~~~~ea~~aa--~~lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~ 100 (423)
+| ||+|++.++.+.+.+++.+.. ..++ +|+|+||..-.|.. .-||.+..+.+++.. +.
T Consensus 134 ~g--Ip~P~t~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~~g~Gs~--s~~v~~v~~~~~l~~---------~~------ 193 (346)
T 2q7d_A 134 DR--ICSPPFMELTSLCGDDTMRLLEKNGLT-FPFICKTRVAHGTN--SHEMAIVFNQEGLNA---------IQ------ 193 (346)
T ss_dssp TT--EECCCEEEECSCCCTTHHHHHHHTTCC-SSEEEECSBCSSTT--CCEEEEECSGGGTTC-----------------
T ss_pred CC--CCCCCEEEEeCCCHHHHHHHHHhcCCC-CCEEEEecCCCcce--eeeeEEecCHHHHHh---------cC------
Confidence 47 566688888763113443332 2454 89999997643333 447888877765432 11
Q ss_pred CceeeEEeeecCC-CceEEEEEEE
Q 014514 101 PITTFIVEPFVPH-NQEYYLSIVS 123 (423)
Q Consensus 101 ~v~~vLVe~~v~~-~~Elylgi~~ 123 (423)
..++|||++++ +.|+-+.+.-
T Consensus 194 --~~~lvQefI~~~G~dirv~VvG 215 (346)
T 2q7d_A 194 --PPCVVQNFINHNAVLYKVFVVG 215 (346)
T ss_dssp --CCEEEEECCCCTTEEEEEEEET
T ss_pred --CCEEEEEeeCCCCeEEEEEEEC
Confidence 23899999985 6788887753
No 84
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=89.16 E-value=0.6 Score=44.83 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=32.4
Q ss_pred cCCCcEEEeeccccCccCCcCeeEEeCCHHHHHHHHHHHhccchhccCCCCCceeeEEeeecCCCceEEEEEEEcC
Q 014514 50 LSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDR 125 (423)
Q Consensus 50 lg~~pvVvK~qv~~g~r~k~GGV~l~~~~ee~~~a~~~~~~~~~~~~~~~~~v~~vLVe~~v~~~~Elylgi~~D~ 125 (423)
++ +|+|+||..-.+++ ||.+..+ . -..++||++++ +.|+.+.+..+.
T Consensus 132 ~~-~P~vvKP~~g~gs~----Gv~~v~~---------------~--------~~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 132 LD-CKFIIKPRTACAGE----GIGFSDE---------------V--------PDGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp CS-SSEEEEESSCC--------CBCCSS---------------C--------CTTEEEEECCC-SEEEEEEEEESS
T ss_pred CC-CCEEEEeCCCCCCC----CEEEEec---------------C--------CCCEEEEeccC-CcEEEEEEEeCC
Confidence 44 89999998755444 5666555 1 13489999999 899999988753
No 85
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=86.10 E-value=3.7 Score=35.66 Aligned_cols=106 Identities=21% Similarity=0.214 Sum_probs=63.5
Q ss_pred HHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhh
Q 014514 286 ADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 365 (423)
Q Consensus 286 ~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~ 365 (423)
...+...|+ +-+++|.+.+++.+.++++-. +|+ .|.+-. -.+...+.. ..+++.+++.+.
T Consensus 39 a~~l~~~G~-----eVi~lG~~~p~e~lv~aa~~~------~~d--iV~lS~--~~~~~~~~~---~~~i~~L~~~g~-- 98 (161)
T 2yxb_A 39 ARALRDAGF-----EVVYTGLRQTPEQVAMAAVQE------DVD--VIGVSI--LNGAHLHLM---KRLMAKLRELGA-- 98 (161)
T ss_dssp HHHHHHTTC-----EEECCCSBCCHHHHHHHHHHT------TCS--EEEEEE--SSSCHHHHH---HHHHHHHHHTTC--
T ss_pred HHHHHHCCC-----EEEECCCCCCHHHHHHHHHhc------CCC--EEEEEe--echhhHHHH---HHHHHHHHhcCC--
Confidence 355655432 457889999999877664221 444 444433 223333444 778888877531
Q ss_pred hcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 366 KAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 366 ~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+.+ +.+||.-..+....+++ .|+.. +|++.+++++++..+.++.+
T Consensus 99 --~~i~--v~vGG~~~~~~~~~l~~----~G~d~-v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 99 --DDIP--VVLGGTIPIPDLEPLRS----LGIRE-IFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp --TTSC--EEEEECCCHHHHHHHHH----TTCCE-EECTTCCHHHHHHHHHHHHH
T ss_pred --CCCE--EEEeCCCchhcHHHHHH----CCCcE-EECCCCCHHHHHHHHHHHHH
Confidence 1344 44567655555556776 89873 45555677888888877654
No 86
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=80.18 E-value=14 Score=35.04 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=71.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+ -|..+.+.+.+-++.++ +.++++++++-.+|=...-...+ -+.++++..+.-. .++||++-.|++
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li-----~~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 79 (294)
T 2ehh_A 11 TPFK-EGEVDYEALGNLIEFHV-----DNGTDAILVCGTTGESPTLTFEE-HEKVIEFAVKRAA----GRIKVIAGTGGN 79 (294)
T ss_dssp CCEE-TTEECHHHHHHHHHHHH-----TTTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCcC-CCCcCHHHHHHHHHHHH-----HCCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 4567 79999999999999998 46899998877433322221111 1345555544432 268999999999
Q ss_pred CHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++| -|.| +. .|.++.++.+-..+.+
T Consensus 80 ~t~~ai~la~~A-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~va~a 124 (294)
T 2ehh_A 80 ATHEAVHLTAHA-KEVGADGALVVVPYY-NK--PTQRGLYEHFKTVAQE 124 (294)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999998877653 2345 2433 32 5778888888777654
No 87
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=79.16 E-value=11 Score=35.66 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=71.9
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 78 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIE-----NGVSGIVAVGTTGESPTLSHEE-HKKVIEKVVDVVN----GRVQVIAGAGS 78 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 35677 899999999999999985 6899998877544332222211 1345555444432 26999999999
Q ss_pred CCHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+ +++| -|.| +. .|.++.++.+-..+.+
T Consensus 79 ~~t~~ai~la~~a-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~ia~a 124 (289)
T 2yxg_A 79 NCTEEAIELSVFA-EDVGADAVLSITPYY-NK--PTQEGLRKHFGKVAES 124 (289)
T ss_dssp SSHHHHHHHHHHH-HHHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 9999998777653 2345 2433 32 5778888887777654
No 88
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=77.88 E-value=14 Score=35.32 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=73.4
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~ 93 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVD-----QGCDGLVVSGTTGESPTTTDGE-KIELLRAVLEAVG----DRARVIAGAGT 93 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCC
Confidence 456666789999999999999985 6899999887544322222111 1345555555432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+. +.|. |.| |. .|.++.++.+-.++.+
T Consensus 94 ~~t~~ai~la~~a~-~~Gadavlv~~P~y-~~--~s~~~l~~~f~~va~a 139 (304)
T 3l21_A 94 YDTAHSIRLAKACA-AEGAHGLLVVTPYY-SK--PPQRGLQAHFTAVADA 139 (304)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 99999988876532 3453 444 32 5778888877776654
No 89
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=77.59 E-value=12 Score=31.24 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhh
Q 014514 287 DTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLK 366 (423)
Q Consensus 287 D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~ 366 (423)
..+...|+ +-+|+|.+.+++.+.++.+-. +++ .+.+-. -.+...... +.+++.+++.+.
T Consensus 25 ~~l~~~G~-----~Vi~lG~~~p~e~~v~~a~~~------~~d--~v~lS~--~~~~~~~~~---~~~i~~l~~~g~--- 83 (137)
T 1ccw_A 25 HAFTNAGF-----NVVNIGVLSPQELFIKAAIET------KAD--AILVSS--LYGQGEIDC---KGLRQKCDEAGL--- 83 (137)
T ss_dssp HHHHHTTC-----EEEEEEEEECHHHHHHHHHHH------TCS--EEEEEE--CSSTHHHHH---TTHHHHHHHTTC---
T ss_pred HHHHHCCC-----EEEECCCCCCHHHHHHHHHhc------CCC--EEEEEe--cCcCcHHHH---HHHHHHHHhcCC---
Confidence 45555432 448899999999887775332 444 333333 223333334 677888877542
Q ss_pred cccceEEEEeCCCC------HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 014514 367 AARMHIFVRRGGPN------YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 419 (423)
Q Consensus 367 ~~~~pvv~rl~G~~------~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~ 419 (423)
.+.+| .+||.- ..+-.+.+++ .|+.- +|++-++..++++..++..
T Consensus 84 -~~i~v--~vGG~~~~~~~~~~~~~~~~~~----~G~d~-~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 84 -EGILL--YVGGNIVVGKQHWPDVEKRFKD----MGYDR-VYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp -TTCEE--EEEESCSSSSCCHHHHHHHHHH----TTCSE-ECCTTCCHHHHHHHHHHHH
T ss_pred -CCCEE--EEECCCcCchHhhhhhHHHHHH----CCCCE-EECCCCCHHHHHHHHHHHh
Confidence 13444 445532 2333456777 89965 4667789999998887754
No 90
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=76.30 E-value=16 Score=35.26 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=71.6
Q ss_pred ceee-ccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 300 NYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 300 N~lD-lgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-|.| =-|..+.+.+.+.++.++ +.++++++++-.+|=...-...+ -..++++..+... .++||++-.|+
T Consensus 20 TPf~~~dg~iD~~~l~~lv~~li-----~~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~ 89 (318)
T 3qfe_A 20 TFFDSKTDTLDLASQERYYAYLA-----RSGLTGLVILGTNAEAFLLTREE-RAQLIATARKAVG----PDFPIMAGVGA 89 (318)
T ss_dssp CCEETTTTEECHHHHHHHHHHHH-----TTTCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHC----TTSCEEEECCC
T ss_pred CCccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 4566 678899999999999998 46899999888544322211111 1345555544432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+. +.|. |-|+|..-.+.++.++.+-.++.+
T Consensus 90 ~~t~~ai~la~~a~-~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a 137 (318)
T 3qfe_A 90 HSTRQVLEHINDAS-VAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQ 137 (318)
T ss_dssp SSHHHHHHHHHHHH-HHTCSEEEECCCCC---CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhh
Confidence 99999988876543 2452 222232223677888888777654
No 91
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=75.06 E-value=22 Score=33.84 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=72.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|++
T Consensus 17 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 86 (297)
T 3flu_A 17 TPMNQDGSIHYEQLRDLIDWHIE-----NGTDGIVAVGTTGESATLSVEE-HTAVIEAVVKHVA----KRVPVIAGTGAN 86 (297)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCc
Confidence 45566689999999999999985 6899999887544332222221 1345555544432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+. ++|. |.| | ..|.++.++.+-.++.+
T Consensus 87 ~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~va~a 131 (297)
T 3flu_A 87 NTVEAIALSQAAE-KAGADYTLSVVPYY-N--KPSQEGIYQHFKTIAEA 131 (297)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 9999988876532 3452 433 3 25778888887776654
No 92
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=74.67 E-value=16 Score=35.06 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=73.0
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 101 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQ-----EGTNAIVAVGTTGESATLDVEE-HIQVIRRVVDQVK----GRIPVIAGTGA 101 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 355666789999999999999885 6899999887544322222111 1345555444432 26899999999
Q ss_pred CCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+ +++|. |.| | ..+.++.++.+-.++.+
T Consensus 102 ~st~eai~la~~A-~~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a 147 (314)
T 3qze_A 102 NSTREAVALTEAA-KSGGADACLLVTPYY-N--KPTQEGMYQHFRHIAEA 147 (314)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-HHcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 9999998877653 33453 444 3 35778888887777654
No 93
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=74.66 E-value=15 Score=35.22 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=71.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.+ -|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+.-. .++||++-.|+
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg~ 90 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLE-----NGVNALIVLGTTGESPTVNEDE-REKLVSRTLEIVD----GKIPVIVGAGT 90 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEcCCC
Confidence 46678 899999999999999985 5899988877433222211111 1345555544432 26899999999
Q ss_pred CCHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+ +++| -|.| +. .|.++.++.+-..+.+
T Consensus 91 ~st~~ai~la~~A-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~va~a 136 (306)
T 1o5k_A 91 NSTEKTLKLVKQA-EKLGANGVLVVTPYY-NK--PTQEGLYQHYKYISER 136 (306)
T ss_dssp SCHHHHHHHHHHH-HHHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 9999998877653 2345 2433 32 5778878777776654
No 94
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=74.54 E-value=16 Score=34.55 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=71.6
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|++
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~ 80 (291)
T 3tak_A 11 TPMLKDGGVDWKSLEKLVEWHIE-----QGTNSIVAVGTTGEASTLSMEE-HTQVIKEIIRVAN----KRIPIIAGTGAN 80 (291)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCCC
Confidence 34555688999999999999885 6899998888544322222221 1345555544432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+. +.|. |.| | ..|.++.++.+-..+.+
T Consensus 81 ~t~~ai~la~~a~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~ia~a 125 (291)
T 3tak_A 81 STREAIELTKAAK-DLGADAALLVTPYY-N--KPTQEGLYQHYKAIAEA 125 (291)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 9999988776532 3452 443 3 25778888887777654
No 95
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=74.04 E-value=16 Score=35.12 Aligned_cols=108 Identities=12% Similarity=0.100 Sum_probs=72.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=.|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|++
T Consensus 32 TPf~~dg~iD~~~l~~li~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~~ 101 (315)
T 3si9_A 32 TPFDDNGAIDEKAFCNFVEWQIT-----QGINGVSPVGTTGESPTLTHEE-HKRIIELCVEQVA----KRVPVVAGAGSN 101 (315)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCC
Confidence 45666789999999999999985 6899998877544332222221 1345555544432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+. ++|. |.| | ..+.++.++.+-.++.+
T Consensus 102 st~~ai~la~~A~-~~Gadavlv~~P~y-~--~~~~~~l~~~f~~va~a 146 (315)
T 3si9_A 102 STSEAVELAKHAE-KAGADAVLVVTPYY-N--RPNQRGLYTHFSSIAKA 146 (315)
T ss_dssp SHHHHHHHHHHHH-HTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCCC-C--CCCHHHHHHHHHHHHHc
Confidence 9999988876532 3452 444 3 25778888887777654
No 96
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=74.02 E-value=14 Score=36.51 Aligned_cols=123 Identities=9% Similarity=0.047 Sum_probs=77.9
Q ss_pred HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhh
Q 014514 284 IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 363 (423)
Q Consensus 284 ~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~ 363 (423)
++.|-+...|..--+--|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+...
T Consensus 53 ~~~~~~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~-----~Gv~Gl~v~GTTGE~~~Ls~eE-r~~vi~~~ve~~~ 126 (360)
T 4dpp_A 53 TNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQ-----NGAEGVIVGGTTGEGQLMSWDE-HIMLIGHTVNCFG 126 (360)
T ss_dssp -CHHHHHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT
T ss_pred cChhhcccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEecccccChhhCCHHH-HHHHHHHHHHHhC
Confidence 344555543222123566777789999999999999985 6899999887544332222221 1335554444322
Q ss_pred hhhcccceEEEEeCCCCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhH
Q 014514 364 KLKAARMHIFVRRGGPNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 364 ~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.++||++-.|+++..++.+..+.+ +++|. |.| + ..|.++.++.+-.++.
T Consensus 127 ----grvpViaGvg~~st~eai~la~~A-~~~Gadavlvv~PyY-~--k~sq~gl~~hf~~IA~ 182 (360)
T 4dpp_A 127 ----GSIKVIGNTGSNSTREAIHATEQG-FAVGMHAALHINPYY-G--KTSIEGLIAHFQSVLH 182 (360)
T ss_dssp ----TTSEEEEECCCSSHHHHHHHHHHH-HHTTCSEEEEECCCS-S--CCCHHHHHHHHHTTGG
T ss_pred ----CCCeEEEecCCCCHHHHHHHHHHH-HHcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHH
Confidence 268999999999999998877653 23564 543 3 2577888887766654
No 97
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=72.29 E-value=18 Score=34.88 Aligned_cols=109 Identities=10% Similarity=0.017 Sum_probs=73.4
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.|=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gi~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 102 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLID-----GGVHAIAPLGSTGEGAYLSDPE-WDEVVDFTLKTVA----HRVPTIVSVSD 102 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 355666789999999999999985 6899999887544322222211 1345555554432 26999999999
Q ss_pred CCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+ +++|. |.| |. .|.++.++.+-..+.+
T Consensus 103 ~~t~~ai~la~~A-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~va~a 148 (315)
T 3na8_A 103 LTTAKTVRRAQFA-ESLGAEAVMVLPISY-WK--LNEAEVFQHYRAVGEA 148 (315)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEECCCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 9999998887653 23453 443 32 5778888888777654
No 98
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=71.74 E-value=23 Score=33.86 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=72.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=.|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 87 (309)
T 3fkr_A 18 TTFADTGDLDLASQKRAVDFMID-----AGSDGLCILANFSEQFAITDDE-RDVLTRTILEHVA----GRVPVIVTTSHY 87 (309)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CCCCcCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCc
Confidence 45666789999999999999985 6899999887544322222221 1345555544432 269999999999
Q ss_pred CHHHHHHHHHhhccccC-------Cceee--cCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELG-------IPLEV--YGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g-------ip~~~--~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++| -|.|. + ..|.++.++.+-..+.+
T Consensus 88 ~t~~ai~la~~A-~~~Gadavlv~~Pyy~~~~--~~s~~~l~~~f~~va~a 135 (309)
T 3fkr_A 88 STQVCAARSLRA-QQLGAAMVMAMPPYHGATF--RVPEAQIFEFYARVSDA 135 (309)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCSCBTTTB--CCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHcCCCEEEEcCCCCccCC--CCCHHHHHHHHHHHHHh
Confidence 999998877653 3345 24331 2 25788888888777654
No 99
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=71.61 E-value=29 Score=33.04 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=70.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+.-. .++||++-.|++
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 91 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLID-----NGTTAIVVGGTTGESPTLTSEE-KVALYRHVVSVVD----KRVPVIAGTGSN 91 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCceEEeCCCCC
Confidence 34555689999999999999985 5899998877433322211111 1345555444432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++|. |.| +. .|.++.++.+-.++.+
T Consensus 92 ~t~~ai~la~~A-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~va~a 136 (301)
T 1xky_A 92 NTHASIDLTKKA-TEVGVDAVMLVAPYY-NK--PSQEGMYQHFKAIAES 136 (301)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999998877653 33452 433 32 5778888887776654
No 100
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=71.21 E-value=32 Score=32.75 Aligned_cols=108 Identities=18% Similarity=0.115 Sum_probs=70.8
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|++
T Consensus 26 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 95 (304)
T 3cpr_A 26 TPFTESGDIDIAAGREVAAYLVD-----KGLDSLVLAGTTGESPTTTAAE-KLELLKAVREEVG----DRAKLIAGVGTN 95 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTTTTSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEecCCCC
Confidence 44555689999999999999985 5899998887433322211111 1345555544432 268999999999
Q ss_pred CHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++| -|.| +. .+.++.++.+-..+.+
T Consensus 96 st~~ai~la~~A-~~~Gadavlv~~P~y-~~--~~~~~l~~~f~~ia~a 140 (304)
T 3cpr_A 96 NTRTSVELAEAA-ASAGADGLLVVTPYY-SK--PSQEGLLAHFGAIAAA 140 (304)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999998877653 3345 2433 32 5778888777776654
No 101
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=71.08 E-value=17 Score=34.72 Aligned_cols=111 Identities=8% Similarity=0.021 Sum_probs=73.2
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.+=-|..+.+.+.+-++.++ +..+++++++-.+|=...-...+ -+.++++..+.-. .++||++-.|+
T Consensus 23 vTPf~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 92 (307)
T 3s5o_A 23 TTPFTATAEVDYGKLEENLHKLG-----TFPFRGFVVQGSNGEFPFLTSSE-RLEVVSRVRQAMP----KNRLLLAGSGC 92 (307)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHT-----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHTSC----TTSEEEEECCC
T ss_pred EccCCCCCCcCHHHHHHHHHHHH-----HcCCCEEEECccccchhhCCHHH-HHHHHHHHHHHcC----CCCcEEEecCC
Confidence 35566678999999999999887 46899999888544322211111 1345565555432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+. ++|. |.| |.+..|.++.++.+-..+.+
T Consensus 93 ~~t~~ai~la~~A~-~~Gadavlv~~P~y-~~~~~s~~~l~~~f~~ia~a 140 (307)
T 3s5o_A 93 ESTQATVEMTVSMA-QVGADAAMVVTPCY-YRGRMSSAALIHHYTKVADL 140 (307)
T ss_dssp SSHHHHHHHHHHHH-HTTCSEEEEECCCT-TGGGCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCCCc-CCCCCCHHHHHHHHHHHHhh
Confidence 99999988776532 3453 433 21124778888888777654
No 102
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=70.04 E-value=18 Score=34.77 Aligned_cols=109 Identities=9% Similarity=0.050 Sum_probs=73.2
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++..|+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~~----grvpViaGvg~ 85 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLA-----HHTDGILLAGTTAESPTLTHDE-ELELFAAVQKVVN----GRVPLIAGVGT 85 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHH-----TTCCCEEESSTTTTGGGSCHHH-HHHHHHHHHHHSC----SSSCEEEECCC
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 355666788999999999999985 6899999888544222221111 1445565555432 36899999999
Q ss_pred CCHHHHHHHHHhhccccCC--------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI--------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi--------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+.+ .|. |.| | ..+.++.++.+-.++.+
T Consensus 86 ~~t~~ai~la~~A~~-~Ga~davlv~~P~y-~--~~s~~~l~~~f~~va~a 132 (311)
T 3h5d_A 86 NDTRDSIEFVKEVAE-FGGFAAGLAIVPYY-N--KPSQEGMYQHFKAIADA 132 (311)
T ss_dssp SSHHHHHHHHHHHHH-SCCCSEEEEECCCS-S--CCCHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHh-cCCCcEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 999999888776443 342 444 3 25778888887777654
No 103
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=69.99 E-value=25 Score=34.05 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=71.8
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
--|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 112 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDA-----AEVDSVGILGSTGIYMYLTREE-RRRAIEAAATILR----GRRTLMAGIGA 112 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHH-----HTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEECC
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 355555689999999999999985 5899998887443322222111 1345555544432 26999999999
Q ss_pred CCHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 379 PNYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
++..++.+..+.+ +++|. |=|++. .|.++.++.+-.++.+
T Consensus 113 ~st~eai~la~~A-~~~Gadavlv~~P~Y~~--~s~~~l~~~f~~VA~a 158 (332)
T 2r8w_A 113 LRTDEAVALAKDA-EAAGADALLLAPVSYTP--LTQEEAYHHFAAVAGA 158 (332)
T ss_dssp SSHHHHHHHHHHH-HHHTCSEEEECCCCSSC--CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCCC--CCHHHHHHHHHHHHHh
Confidence 9999998777653 23452 223232 5778888887777654
No 104
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=69.88 E-value=38 Score=31.98 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=71.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ +.++++++++-.+|=...-...+ -+.++++..+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~----~~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 83 (293)
T 1f6k_A 13 VSFNEDGTINEKGLRQIIRHNID----KMKVDGLYVGGSTGENFMLSTEE-KKEIFRIAKDEAK----DQIALIAQVGSV 83 (293)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh----hCCCcEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEecCCC
Confidence 34444688999999999999884 37899998887433322211111 1345555544432 269999999999
Q ss_pred CHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++| -|.| +. .+.++.++.+-..+.+
T Consensus 84 ~t~~ai~la~~a-~~~Gadavlv~~P~y-~~--~~~~~l~~~f~~va~a 128 (293)
T 1f6k_A 84 NLKEAVELGKYA-TELGYDCLSAVTPFY-YK--FSFPEIKHYYDTIIAE 128 (293)
T ss_dssp CHHHHHHHHHHH-HHHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999998877653 2345 2433 32 5778888887777654
No 105
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=68.70 E-value=9.4 Score=35.21 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 307 APNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 307 ~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
..+.+.+.++++.+.+ |+++++|++.+ +||-. .. . +.+.++++..... .++||++.++|.-...+
T Consensus 28 ~~~~~~l~~~l~~a~~----d~~v~~ivL~~~s~Gg~~--~~-~---~~i~~~l~~~~~~---~~kPVia~v~g~a~~gG 94 (240)
T 3rst_A 28 GYNHRTFLKNLERAKD----DKTVKGIVLKVNSPGGGV--YE-S---AEIHKKLEEIKKE---TKKPIYVSMGSMAASGG 94 (240)
T ss_dssp CCCHHHHHHHHHHHHH----CTTEEEEEEEEEECCBCH--HH-H---HHHHHHHHHHHHH---HCCCEEEEEEEEEETHH
T ss_pred CcCHHHHHHHHHHHHh----CCCcEEEEEEecCCCCCH--HH-H---HHHHHHHHHHHHh---CCCeEEEEECCeehHhH
Confidence 4567888888888877 99999988877 44422 11 1 3344444443210 26899998877544444
Q ss_pred H
Q 014514 385 L 385 (423)
Q Consensus 385 ~ 385 (423)
.
T Consensus 95 ~ 95 (240)
T 3rst_A 95 Y 95 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=68.45 E-value=32 Score=32.54 Aligned_cols=107 Identities=7% Similarity=0.086 Sum_probs=70.5
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+++
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~ 81 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVA-----SGTSAIVSVGTTGESATLNHDE-HADVVMMTLDLAD----GRIPVIAGTGANA 81 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSS
T ss_pred cCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCcc
Confidence 4444588999999999999985 5899988887443322222111 1345555544432 2689999999999
Q ss_pred HHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
..++.+..+.+ +++|. |.| +. .|.++.++.+-..+.+
T Consensus 82 t~~ai~la~~a-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~ia~a 125 (292)
T 2ojp_A 82 TAEAISLTQRF-NDSGIVGCLTVTPYY-NR--PSQEGLYQHFKAIAEH 125 (292)
T ss_dssp HHHHHHHHHHT-TTSSCSEEEEECCCS-SC--CCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 99998887764 33452 433 32 5778888877776654
No 107
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=68.41 E-value=33 Score=32.66 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=70.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|++
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 90 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQ-----QGIDGLYVGGSTGEAFVQSLSE-REQVLEIVAEEAK----GKIKLIAHVGCV 90 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECeeccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 44555689999999999999985 6899998877433222211111 1345555444432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++|. |.| +. .|.++.++.+-.++.+
T Consensus 91 ~t~~ai~la~~A-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 91 STAESQQLAASA-KRYGFDAVSAVTPFY-YP--FSFEEHCDHYRAIIDS 135 (303)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhCCCCEEEecCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999988777653 23452 433 33 5778888887777654
No 108
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=67.46 E-value=26 Score=33.35 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=68.9
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... +.++||++-.|+++..++
T Consensus 22 dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~---g~rvpviaGvg~~~t~~a 92 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIE-----NGIDAVVPVGTTGESATLTHEE-HRTCIEIAVETCK---GTKVKVLAGAGSNATHEA 92 (301)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCCEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT---TSSCEEEEECCCSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC---CCCCeEEEeCCCCCHHHH
Confidence 678999999999999885 6899998887544322222111 1345555544431 115899999999999999
Q ss_pred HHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 385 LAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 385 ~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
.+..+.+ ++.|. |.| | ..|.++.++.+-.++.+
T Consensus 93 i~la~~a-~~~Gadavlv~~P~y-~--~~s~~~l~~~f~~va~a 132 (301)
T 3m5v_A 93 VGLAKFA-KEHGADGILSVAPYY-N--KPTQQGLYEHYKAIAQS 132 (301)
T ss_dssp HHHHHHH-HHTTCSEEEEECCCS-S--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 8887653 23453 444 3 25778888888777654
No 109
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=67.11 E-value=49 Score=26.81 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=59.1
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe-cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~-~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
+.+-|.-+.++.....+.+++.+.+ .+.+.+++.+ .-.+.++ ..+ ..+.+.++..+.. + .-+.+.|-+
T Consensus 16 v~l~G~lD~~~a~~l~~~ll~~i~~-~~~~~vIlDlsgV~~iDs-~g~---~~L~~~~~~~~l~----G--~~~~l~Gi~ 84 (123)
T 3zxn_A 16 VAIEETLHDQSVIQFKEELLHNITG-VAGKGLVIDISALEVVDE-FVT---RVLIEISRLAELL----G--LPFVLTGIK 84 (123)
T ss_dssp EECCCCC-CHHHHHHHHHHHHHHTS-SCCSEEEEECTTCSSCCH-HHH---HHHHHHHHHHHHH----T--CCEEEECCC
T ss_pred EEEeEeeCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccH-HHH---HHHHHHHHHHHHC----C--CEEEEEcCC
Confidence 4577777877777777777664443 4566666666 2333442 233 5666655554321 2 223455655
Q ss_pred HHHHHHHHHhhccc-cCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEE-LGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~-~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
.+- .+.|..++-. .++++| .|.++|+..+-+.++.
T Consensus 85 p~v-a~~l~~~G~~l~~i~~~-----~~l~~Al~~l~~~~~~ 120 (123)
T 3zxn_A 85 PAV-AITLTEMGLDLRGMATA-----LNLQKGLDKLKNLARM 120 (123)
T ss_dssp HHH-HHHHHHTTCCSTTSEEE-----SSHHHHHHHHHHHHTC
T ss_pred HHH-HHHHHHhCCCccceEEE-----CCHHHHHHHHHHhhhh
Confidence 444 4566653332 344444 8999999988777653
No 110
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=64.84 E-value=35 Score=33.22 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=70.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 41 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~~ 110 (343)
T 2v9d_A 41 TIFTADGQLDKPGTAALIDDLIK-----AGVDGLFFLGSGGEFSQLGAEE-RKAIARFAIDHVD----RRVPVLIGTGGT 110 (343)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCSS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 45555689999999999999985 6889988877443322211111 1345555444432 268999999999
Q ss_pred CHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++| -|.| +. .|.++.++.+-.++.+
T Consensus 111 st~eai~la~~A-~~~Gadavlv~~P~Y-~~--~s~~~l~~~f~~VA~a 155 (343)
T 2v9d_A 111 NARETIELSQHA-QQAGADGIVVINPYY-WK--VSEANLIRYFEQVADS 155 (343)
T ss_dssp CHHHHHHHHHHH-HHHTCSEEEEECCSS-SC--CCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999998877653 2344 2433 32 5778888887777654
No 111
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=62.42 E-value=45 Score=31.50 Aligned_cols=108 Identities=10% Similarity=0.028 Sum_probs=71.1
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+++
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~ 83 (294)
T 3b4u_A 14 PFKTDGTVDIDAMIAHARRCLS-----NGCDSVTLFGTTGEGCSVGSRE-RQAILSSFIAAGI----APSRIVTGVLVDS 83 (294)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHTTC----CGGGEEEEECCSS
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCcc
Confidence 4444689999999999999985 5899998887433322211111 1455565555432 3689999999999
Q ss_pred HHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
..++.+..+.+ +++| -|.| |. ..|.++.++.+-..+.+
T Consensus 84 t~~ai~la~~A-~~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 84 IEDAADQSAEA-LNAGARNILLAPPSY-FK-NVSDDGLFAWFSAVFSK 128 (294)
T ss_dssp HHHHHHHHHHH-HHTTCSEEEECCCCS-SC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCcC-CC-CCCHHHHHHHHHHHHHh
Confidence 99998877653 2345 2433 32 14778888888777654
No 112
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=61.77 E-value=37 Score=32.52 Aligned_cols=108 Identities=14% Similarity=0.024 Sum_probs=70.3
Q ss_pred Cceeec-cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 014514 299 GNYAEY-SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 377 (423)
Q Consensus 299 aN~lDl-gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~ 377 (423)
--|.+= -|..+.+.+.+.++.++ +.++++++++-.+|=...-...+ -+.++++..+... .++||++-.|
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li-----~~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~v~~~~----grvpViaGvg 89 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIV-----DNGIDVIVPCGNTSEFYALSLEE-AKEEVRRTVEYVH----GRALVVAGIG 89 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHH-----TTTCCEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eCCccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEEeC
Confidence 355665 68999999999999998 47899988877443322222111 1345555444432 2689999997
Q ss_pred CCCHHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 378 GPNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 378 G~~~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
. +..++.+..+.+ +++|. |.| ...|.++.++.+-.++.+
T Consensus 90 ~-~t~~ai~la~~A-~~~Gadavlv~~P~y---~~~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 90 Y-ATSTAIELGNAA-KAAGADAVMIHMPIH---PYVTAGGVYAYFRDIIEA 135 (316)
T ss_dssp S-SHHHHHHHHHHH-HHHTCSEEEECCCCC---SCCCHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHH-HhcCCCEEEEcCCCC---CCCCHHHHHHHHHHHHHh
Confidence 5 888887776653 23452 655 235888888888777654
No 113
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=61.52 E-value=42 Score=32.10 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=71.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=.|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++..+.. . ++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Lt~~E-r~~v~~~~v~~~-g----rvpViaGvg~~ 86 (313)
T 3dz1_A 18 TPFHDDGKIDDVSIDRLTDFYAE-----VGCEGVTVLGILGEAPKLDAAE-AEAVATRFIKRA-K----SMQVIVGVSAP 86 (313)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESTGGGTGGGSCHHH-HHHHHHHHHHHC-T----TSEEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEeCccCcChhhCCHHH-HHHHHHHHHHHc-C----CCcEEEecCCC
Confidence 45555689999999999999985 6899998887544322222111 134555544442 1 69999999999
Q ss_pred CHHHHHHHHHhhccccC------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELG------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+. ++| +|-| | ..|.++.++.+-.++.+
T Consensus 87 ~t~~ai~la~~A~-~~Gadavlv~~P~-~--~~s~~~l~~~f~~va~a 130 (313)
T 3dz1_A 87 GFAAMRRLARLSM-DAGAAGVMIAPPP-S--LRTDEQITTYFRQATEA 130 (313)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEECCCT-T--CCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCC-C--CCCHHHHHHHHHHHHHh
Confidence 9999988776532 345 2333 2 25788888888777754
No 114
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=59.95 E-value=26 Score=33.30 Aligned_cols=104 Identities=10% Similarity=0.084 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+++..++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~~t~~a 84 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIK-----HGAHGLVPVGTTGESPTLTEEE-HKRVVALVAEQAQ----GRVPVIAGAGSNNPVEA 84 (297)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEccCCCCHHHH
Confidence 478899999999999885 6899988877433222211111 1345555444332 26899999999999998
Q ss_pred HHHHHhhccccC------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 385 LAKMRALGEELG------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 385 ~~~l~~~~~~~g------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
.+..+.+ +++| +|-|++. .|.++.++.+-..+.+
T Consensus 85 i~la~~A-~~~Gadavlv~~P~y~~--~s~~~l~~~f~~va~a 124 (297)
T 2rfg_A 85 VRYAQHA-QQAGADAVLCVAGYYNR--PSQEGLYQHFKMVHDA 124 (297)
T ss_dssp HHHHHHH-HHHTCSEEEECCCTTTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCCEEEEcCCCCCC--CCHHHHHHHHHHHHHh
Confidence 8777653 2244 2223232 5778888877776654
No 115
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=59.74 E-value=37 Score=32.52 Aligned_cols=109 Identities=9% Similarity=-0.084 Sum_probs=69.9
Q ss_pred Ccee-eccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 014514 299 GNYA-EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 377 (423)
Q Consensus 299 aN~l-DlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~ 377 (423)
--|. +=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg 89 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQ-----NGIEVIVPNGNTGEFYALTIEE-AKQVATRVTELVN----GRATVVAGIG 89 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHH-----TTCSEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eccccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEECcccCChhhCCHHH-HHHHHHHHHHHhC----CCCeEEecCC
Confidence 3455 55689999999999999985 6899988776433222111111 1345555544432 2689999999
Q ss_pred CCCHHHHHHHHHhhccccC------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 378 GPNYQTGLAKMRALGEELG------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 378 G~~~~~a~~~l~~~~~~~g------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+ +..++.+..+.+ +++| +|-|++. .+.++.++.+-.++.+
T Consensus 90 ~-st~~ai~la~~A-~~~Gadavlv~~P~y~~--~s~~~l~~~f~~va~a 135 (314)
T 3d0c_A 90 Y-SVDTAIELGKSA-IDSGADCVMIHQPVHPY--ITDAGAVEYYRNIIEA 135 (314)
T ss_dssp S-SHHHHHHHHHHH-HHTTCSEEEECCCCCSC--CCHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHH-HHcCCCEEEECCCCCCC--CCHHHHHHHHHHHHHh
Confidence 9 988888777653 3345 2223333 5778888887777654
No 116
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=59.24 E-value=14 Score=35.25 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=70.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=.|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -..++++..+... .++||++-.|++
T Consensus 14 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 83 (300)
T 3eb2_A 14 SPVDAEGRVRADVMGRLCDDLIQ-----AGVHGLTPLGSTGEFAYLGTAQ-REAVVRATIEAAQ----RRVPVVAGVAST 83 (300)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSCBBTTSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCBEEEEEES
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCC
Confidence 45666689999999999999985 6889888877444222111111 1345555444432 268999999999
Q ss_pred CHHHHHHHHHhhccccCC------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELGI------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gi------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+. ++|. |-|+|. .|.++.++.+-.++.+
T Consensus 84 ~t~~ai~la~~a~-~~Gadavlv~~P~y~~--~~~~~l~~~f~~va~a 128 (300)
T 3eb2_A 84 SVADAVAQAKLYE-KLGADGILAILEAYFP--LKDAQIESYFRAIADA 128 (300)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEEEECCSSC--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEcCCCCCC--CCHHHHHHHHHHHHHH
Confidence 9999988776532 2453 223232 5778888887777654
No 117
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=57.35 E-value=38 Score=31.96 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=66.4
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|.+=-| .+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+++
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pvi~Gvg~~~ 81 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIK-----SKTDAIIVCGTTGEATTMTETE-RKETIKFVIDKVN----KRIPVIAGTGSNN 81 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSS
T ss_pred CcCCCC-cCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCccc
Confidence 344446 999999999999985 6899988877433222211111 1345555444432 2689999999999
Q ss_pred HHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
..++.+..+.+ +++|. |.| +. .|.++.++.+-.++.+
T Consensus 82 t~~ai~la~~a-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~ia~a 125 (291)
T 3a5f_A 82 TAASIAMSKWA-ESIGVDGLLVITPYY-NK--TTQKGLVKHFKAVSDA 125 (291)
T ss_dssp HHHHHHHHHHH-HHTTCSEEEEECCCS-SC--CCHHHHHHHC-CTGGG
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 99998877653 33452 433 32 5777777776655543
No 118
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=55.98 E-value=58 Score=30.70 Aligned_cols=106 Identities=9% Similarity=0.056 Sum_probs=68.5
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|.+=. ..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+... .++||++-.|+++
T Consensus 14 Pf~~d-~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~~~ 82 (292)
T 3daq_A 14 PFTNN-KVNLEALKAHVNFLLE-----NNAQAIIVNGTTAESPTLTTDE-KELILKTVIDLVD----KRVPVIAGTGTND 82 (292)
T ss_dssp CEETT-EECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSC
T ss_pred CcCCC-CcCHHHHHHHHHHHHH-----cCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCccc
Confidence 34434 6788889999988884 6899999887544332211111 1345555544432 3689999999999
Q ss_pred HHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
..++.+..+.+. ++|. |.| |. .|.++.++.+-.++.+
T Consensus 83 t~~ai~la~~a~-~~Gadavlv~~P~y-~~--~~~~~l~~~f~~ia~a 126 (292)
T 3daq_A 83 TEKSIQASIQAK-ALGADAIMLITPYY-NK--TNQRGLVKHFEAIADA 126 (292)
T ss_dssp HHHHHHHHHHHH-HHTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 999988776532 2452 433 32 5778888887777654
No 119
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=55.95 E-value=35 Score=32.22 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=66.8
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+.-. .++||++-.|+++..++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~t~~a 84 (292)
T 2vc6_A 15 DDRIDEVALHDLVEWQIE-----EGSFGLVPCGTTGESPTLSKSE-HEQVVEITIKTAN----GRVPVIAGAGSNSTAEA 84 (292)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEETTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCccHHHH
Confidence 478899999999999985 5889988776433222211111 1345555544432 26899999999999988
Q ss_pred HHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 385 LAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 385 ~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
.+..+.+ +++| -|.| +. .|.++.++.+-..+.+
T Consensus 85 i~la~~A-~~~Gadavlv~~P~y-~~--~s~~~l~~~f~~ia~a 124 (292)
T 2vc6_A 85 IAFVRHA-QNAGADGVLIVSPYY-NK--PTQEGIYQHFKAIDAA 124 (292)
T ss_dssp HHHHHHH-HHTTCSEEEEECCCS-SC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCEEEEcCCCC-CC--CCHHHHHHHHHHHHHh
Confidence 8777653 3345 2433 32 5778888877776654
No 120
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=47.86 E-value=27 Score=31.32 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=39.2
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEE--EecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRAL--LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv--~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
+-++|..+........+.+..+ ..+++++.|++ |.|||-.. -+ ..|.++++.. ++||++.++|.
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~~-~~~~~~k~I~l~InSPGG~v~---a~---~~I~~~i~~~-------~~pV~~~v~g~ 95 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILLL-AAEDASKDISLYINSPGGSIS---AG---MAIYDTMVLA-------PCDIATYAMGM 95 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHHH-HHHCSSSCEEEEEEECCBCHH---HH---HHHHHHHHHC-------SSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHH-HhCCCCCCEEEEEECCCCCHH---HH---HHHHHHHHhc-------CCCEEEEECcE
Confidence 5566666655444444444221 11555665544 44888542 12 7788887765 57888887775
Q ss_pred CHHHH
Q 014514 380 NYQTG 384 (423)
Q Consensus 380 ~~~~a 384 (423)
-+-.|
T Consensus 96 AaS~g 100 (208)
T 2cby_A 96 AASMG 100 (208)
T ss_dssp EETHH
T ss_pred eHHHH
Confidence 44444
No 121
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=46.73 E-value=17 Score=38.10 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 014514 306 GAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 383 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~ 383 (423)
+....+.+.++++.+.+ |+++++|++-+ +||-.... +.|-+.++.... .++||++.++|.-.-.
T Consensus 320 ~~~~~~~l~~~L~~a~~----d~~vkaVVL~i~spGG~~~~~------~~i~~~i~~l~~----~~kPVia~v~g~Aasg 385 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS------EVIRAELAAARA----AGKPVVVSMGGMAASG 385 (593)
T ss_dssp TSEEHHHHHHHHHHHHH----CTTEEEEEEEEEEEEECHHHH------HHHHHHHHHHHH----TTCCEEEEEEEEEETH
T ss_pred chhHHHHHHHHHHHHHh----CCCCCEEEEEecCCCCCHHHH------HHHHHHHHHHHh----CCCCEEEEECCChHHH
Confidence 34567888888888877 99999988877 56543221 223333333321 3699999988854443
Q ss_pred H
Q 014514 384 G 384 (423)
Q Consensus 384 a 384 (423)
|
T Consensus 386 G 386 (593)
T 3bf0_A 386 G 386 (593)
T ss_dssp H
T ss_pred H
Confidence 3
No 122
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=45.83 E-value=1.1e+02 Score=28.62 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=68.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+ -|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -+.++++..+.. .+ |++-.|++
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~-----~g--vi~Gvg~~ 74 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITS-----KGVDVVFVAGTTGLGPALSLQE-KMELTDAATSAA-----RR--VIVQVASL 74 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHHHHC-----SS--EEEECCCS
T ss_pred cCcC-CCccCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh-----CC--EEEeeCCC
Confidence 4567 789999999999999985 6899988877544322222111 145566655542 12 88889999
Q ss_pred CHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 380 NYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
+..++.+..+.+ +++| -|.| +. -.|.++.++.+-..+.+
T Consensus 75 ~t~~ai~la~~A-~~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a 120 (286)
T 2r91_A 75 NADEAIALAKYA-ESRGAEAVASLPPYY-FP-RLSERQIAKYFRDLCSA 120 (286)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCSCS-ST-TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCcC-CC-CCCHHHHHHHHHHHHHh
Confidence 999998877653 3345 2433 22 04778888887777654
No 123
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=45.64 E-value=55 Score=35.46 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=58.1
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC--C
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG--P 379 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G--~ 379 (423)
+|+|.+.+++.+.++. .+ .+++.|.+- +-.+...+.. ..+++++++.+. .+++ +..|| +
T Consensus 636 i~lG~~v~~eeiv~aA---~e-----~~adiVglS--sl~~~~~~~~---~~vi~~Lr~~G~----~dv~--VivGG~~P 696 (762)
T 2xij_A 636 DIGPLFQTPREVAQQA---VD-----ADVHAVGVS--TLAAGHKTLV---PELIKELNSLGR----PDIL--VMCGGVIP 696 (762)
T ss_dssp EECCTTCCHHHHHHHH---HH-----TTCSEEEEE--ECSSCHHHHH---HHHHHHHHHTTC----TTSE--EEEEESCC
T ss_pred eeCCCCCCHHHHHHHH---HH-----cCCCEEEEe--eecHHHHHHH---HHHHHHHHhcCC----CCCE--EEEeCCCC
Confidence 7899999999877764 32 345544433 2233333444 788888888752 2334 44555 3
Q ss_pred CHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 380 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
..+ ...+.+ .|+.-| |++-++..+++..+++...
T Consensus 697 ~~d--~~~l~~----~GaD~~-f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 697 PQD--YEFLFE----VGVSNV-FGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp GGG--HHHHHH----HTCCEE-ECTTCCHHHHHHHHHHHHH
T ss_pred ccc--HHHHHh----CCCCEE-eCCCCCHHHHHHHHHHHHH
Confidence 322 234566 788765 5566799999999888764
No 124
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=45.43 E-value=31 Score=30.54 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCEEEE--EecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 014514 310 EEEVLQYARVVIDCATADPDGRKRAL--LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 384 (423)
Q Consensus 310 ~~~~~~a~~~ll~~~~~~~~~~~vlv--~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a 384 (423)
.+.+...++.+-+ +++.+.+++ |.|||-... + ..|.++++.+ ++||++.++|.-+-.|
T Consensus 40 a~~i~~~L~~l~~----~~~~~~I~l~InSPGG~v~a---~---~~I~~~i~~~-------~~pV~~~v~g~AaS~g 99 (193)
T 1yg6_A 40 ANLIVAQMLFLEA----ENPEKDIYLYINSPGGVITA---G---MSIYDTMQFI-------KPDVSTICMGQAASMG 99 (193)
T ss_dssp HHHHHHHHHHHHH----HCSSSCEEEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHh----cCCCCCEEEEEECcCCCHHH---H---HHHHHHHHhc-------CCCEEEEEeeeHHHHH
Confidence 3444444444433 444565444 448885431 2 6778887765 4788888777544444
No 125
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=42.39 E-value=84 Score=24.15 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=33.6
Q ss_pred ccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhHh
Q 014514 368 ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 368 ~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
..+|+++-..|.....-.+.-.++.+ -|+..-+. ..++|+|--...-+.-+.
T Consensus 50 ngkplvvfvngasqndvnefqneakk-egvsydvl-kstdpeeltqrvreflkt 101 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKK-EGVSYDVL-KSTDPEELTQRVREFLKT 101 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHH-HTCEEEEE-ECCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHh-cCcchhhh-ccCCHHHHHHHHHHHHHh
Confidence 36899999999887766666555333 48876554 346777766555444443
No 126
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=42.09 E-value=1.3e+02 Score=24.00 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhhhccCC-CCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 014514 309 NEEEVLQYARVVIDCATADP-DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 387 (423)
Q Consensus 309 ~~~~~~~a~~~ll~~~~~~~-~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~ 387 (423)
+.+.+.+.+.-++. .+| ..+.+++. +++++..+..+. ..+++..++... .+..+ .+.|.+ ..-+++
T Consensus 29 ~a~~~~~~l~~~~~---~~~~~~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~l--~l~~~~-~~v~~~ 95 (130)
T 2kln_A 29 NAEDFRRRALTVVD---QDPGQVEWFVLN-AESNVEVDLTAL--DALDQLRTELLR----RGIVF--AMARVK-QDLRES 95 (130)
T ss_dssp THHHHHHHHHHHTT---SSSSCCEEEEEE-CSCCSSSBCSTT--THHHHHHHHHHT----TTEEE--EEECCS-SHHHHH
T ss_pred hHHHHHHHHHHHHh---cCCCCceEEEEE-CCCCChhhHHHH--HHHHHHHHHHHH----CCCEE--EEEcCC-HHHHHH
Confidence 45566666655443 122 45545444 455555555442 666666666542 24333 333433 245667
Q ss_pred HHhhccccCC-------ceeecCCCCCHHHHHHHHH
Q 014514 388 MRALGEELGI-------PLEVYGPEATMTGICKQAI 416 (423)
Q Consensus 388 l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~ 416 (423)
|.. +|+ ++| .|.++|+..+-
T Consensus 96 l~~----~gl~~~~~~~~i~-----~t~~~Al~~~~ 122 (130)
T 2kln_A 96 LRA----ASLLDKIGEDHIF-----MTLPTAVQAFR 122 (130)
T ss_dssp HHH----CTTHHHHCTTEEE-----SCHHHHHHHHT
T ss_pred HHH----cCChhhcCcceeE-----CCHHHHHHHHH
Confidence 766 665 444 79999987653
No 127
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=40.17 E-value=1.3e+02 Score=29.11 Aligned_cols=105 Identities=9% Similarity=0.001 Sum_probs=67.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
-|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -+.++++ ... .++||++-.|++
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~--~~~-----grvpViaGvg~~ 102 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIA-----DGMSAVVYCGSMGDWPLLTDEQ-RMEGVER--LVK-----AGIPVIVGTGAV 102 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCCEEESSGGGTGGGSCHHH-HHHHHHH--HHH-----TTCCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccCcChhhCCHHH-HHHHHHH--HhC-----CCCcEEEecCCC
Confidence 34444689999999999999985 6889988877433322211111 1345554 221 268999999999
Q ss_pred CHHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhH
Q 014514 380 NYQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+..++.+..+.+. ++| -|.| +. -.+.++.++.+-.++.
T Consensus 103 st~eai~la~~A~-~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 103 NTASAVAHAVHAQ-KVGAKGLMVIPRVL-SR-GSVIAAQKAHFKAILS 147 (344)
T ss_dssp SHHHHHHHHHHHH-HHTCSEEEECCCCS-SS-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCcc-CC-CCCHHHHHHHHHHHHh
Confidence 9898887776532 244 2433 21 0467777777777665
No 128
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=37.71 E-value=2.3e+02 Score=26.96 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=56.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec--Cc-----------------------------------C
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GG-----------------------------------I 341 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~--gg-----------------------------------i 341 (423)
.-...+..+.+.+.+.+.++-+-+ ||++++++|-.| .+ +
T Consensus 69 ~~~~~lp~~~s~~ell~~I~~lN~----d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~ 144 (300)
T 4a26_A 69 SFNVELPEDISQEVLEVNVEKLNN----DPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPF 144 (300)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC----CCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCC
Confidence 345677788888888888777766 888888887663 22 2
Q ss_pred CchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecC
Q 014514 342 ANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYG 403 (423)
Q Consensus 342 ~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~ 403 (423)
.+| |..|+++.++++.-.+ ..+.+++- .++.--...-..|.. .|.-++++.
T Consensus 145 ~Pc-----Tp~gv~~lL~~~~i~l--~Gk~vvVIG~s~iVG~p~A~lL~~----~gAtVtv~~ 196 (300)
T 4a26_A 145 TPC-----TAKGVIVLLKRCGIEM--AGKRAVVLGRSNIVGAPVAALLMK----ENATVTIVH 196 (300)
T ss_dssp CCH-----HHHHHHHHHHHHTCCC--TTCEEEEECCCTTTHHHHHHHHHH----TTCEEEEEC
T ss_pred CCC-----CHHHHHHHHHHcCCCC--CCCEEEEECCCchHHHHHHHHHHH----CCCeEEEEe
Confidence 333 2388999988875332 23444444 555434444445554 677777664
No 129
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=37.54 E-value=2e+02 Score=24.74 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccCCC-CCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe---cCcCCchhHHhhhHHHH
Q 014514 281 ASVIYADTVGDLGYA-SELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---GGGIANFTDVATTFNGI 354 (423)
Q Consensus 281 ~~~~~~D~l~~~g~g-g~~aN~--lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~---~ggi~~~~~va~~~~~i 354 (423)
+---+.|.+..+ | .+..|. ++..|.-. +--+.+.+++ ....|+++..- =|++..++-|+ +.+
T Consensus 30 Ll~gA~~~l~~~--G~v~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VIrG~T~Hfd~Va---~~v 97 (156)
T 3nq4_A 30 LLDGAVDALTRI--GQVKDDNITVVWVPGAYE---LPLATEALAK----SGKYDAVVALGTVIRGGTAHFEYVA---GGA 97 (156)
T ss_dssp HHHHHHHHHHHT--TCCCTTSEEEEEESSTTT---HHHHHHHHHH----HCSCSEEEEEEEEECCSSTHHHHHH---HHH
T ss_pred HHHHHHHHHHHc--CCCcccceEEEEcCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeecCCchHHHHHH---HHH
Confidence 444577888885 5 555554 66677665 4456666665 45688877766 28888877777 666
Q ss_pred HHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 355 IRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 355 i~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+.+-+..- ..++||.-. +.-.+.++|.+. +|...- .-=.||+..++++++
T Consensus 98 ~~Gl~~v~L---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~~-----nKG~eaA~aalem~~ 149 (156)
T 3nq4_A 98 SNGLASVAQ---DSGVPVAFGVLTTESIEQAIER-------AGTKAG-----NKGAEAALTALEMIN 149 (156)
T ss_dssp HHHHHHHHH---HHCCCEEEEEEEESCHHHHHHH-------BTSTTC-----BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---ccCCCEEEEEeCCCCHHHHHHH-------hCCccc-----ccHHHHHHHHHHHHH
Confidence 665555432 247997766 777888877554 342211 345889999999875
No 130
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=37.09 E-value=15 Score=35.73 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhccCCCCCcCCceEEeeCCC----------HHhHHh-hccccCCCcEEEeecc
Q 014514 9 YDSKRLLKEHLKRLAGLDLQICSAQVTESTD----------FSELTN-KEPWLSSSRLVVKPDM 61 (423)
Q Consensus 9 ~eak~lL~~y~~~~~GI~ipv~~~~~~~~~~----------~~ea~~-aa~~lg~~pvVvK~qv 61 (423)
..+.++|++. | ||+|++.+++... .+++.+ ....++ +|+|.||..
T Consensus 99 ~~~~~iL~~~-----g--IPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~-kPfVeKPv~ 154 (330)
T 3t7a_A 99 REVYSILQAE-----G--ILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQ-KPFVEKPVS 154 (330)
T ss_dssp HHHHHHHHHT-----T--CCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEE-SSEEEEESB
T ss_pred HHHHHHHHHc-----C--CCCCCEEEEeCCCCCccccceeccchhhhhcccccc-CCeeEcccc
Confidence 3467899998 8 5666888876420 012222 234554 899999875
No 131
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=36.58 E-value=1.4e+02 Score=25.66 Aligned_cols=120 Identities=16% Similarity=0.062 Sum_probs=74.8
Q ss_pred cEEEEEcC------ccHHHHHHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHHhhhccC-----CCCCEEEEEe
Q 014514 271 RIWTMVAG------GGASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATAD-----PDGRKRALLI 337 (423)
Q Consensus 271 ~I~ii~NG------~G~~~~~~D~l~~~g~gg~~aN~--lDlgG~a~~~~~~~a~~~ll~~~~~~-----~~~~~vlv~~ 337 (423)
+|+|+..- -.+---+.|.+..+ | .|. ++..|.- .+--+.+.+.+ . ...|+++..-
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G---~~i~v~~VPGaf---EiP~aa~~la~----~~~~~~~~yDavIaLG 81 (157)
T 2i0f_A 14 HLLIVEARFYDDLADALLDGAKAALDEA--G---ATYDVVTVPGAL---EIPATISFALD----GADNGGTEYDGFVALG 81 (157)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHT--T---CEEEEEEESSGG---GHHHHHHHHHH----HHHTTCCCCSEEEEEE
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHc--C---CCeEEEECCcHH---HHHHHHHHHHh----hccccCCCCCEEEEee
Confidence 56666421 13444467888875 4 343 3444443 35556666654 3 5678877665
Q ss_pred ---cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHH
Q 014514 338 ---GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICK 413 (423)
Q Consensus 338 ---~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~ 413 (423)
=|++..++-|+ +.+.+.+-+..- ..++||.-. +.-.+.++|.+.-. ... ..-=.||+.
T Consensus 82 ~VIrG~T~Hfd~Va---~~v~~gl~~vsl---~~~vPV~~GVLT~~~~eQA~~Rag-------~~~-----~nkG~eaA~ 143 (157)
T 2i0f_A 82 TVIRGETYHFDIVS---NESCRALTDLSV---EESIAIGNGILTVENEEQAWVHAR-------RED-----KDKGGFAAR 143 (157)
T ss_dssp EEECCSSSTTHHHH---HHHHHHHHHHHH---HTTCCEEEEEEEESSHHHHHHHHC-------TTT-----TCHHHHHHH
T ss_pred eeecCCchHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHHhC-------ccc-----cccHHHHHH
Confidence 38888888887 666666655442 247997776 77778888866542 111 134588999
Q ss_pred HHHHHhH
Q 014514 414 QAIDCIM 420 (423)
Q Consensus 414 ~~~~~~~ 420 (423)
.++++++
T Consensus 144 aAlem~~ 150 (157)
T 2i0f_A 144 AALTMIG 150 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 132
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=36.41 E-value=56 Score=29.51 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=33.8
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEE--EEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRA--LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vl--v~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
+-++|..+..........++.+-..++ +.|+ ||.|||-... + ..|.++++.. +.||++...|.
T Consensus 42 I~l~G~I~~~~a~~i~~~L~~l~~~~~--k~I~l~INSPGGsv~a---~---~~I~~~i~~~-------~~pV~t~v~g~ 106 (215)
T 2f6i_A 42 IYLTDEINKKTADELISQLLYLDNINH--NDIKIYINSPGGSINE---G---LAILDIFNYI-------KSDIQTISFGL 106 (215)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHHCC--SCEEEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEE
T ss_pred EEEccEECHHHHHHHHHHHHHHHhCCC--CcEEEEEECCCCCHHH---H---HHHHHHHHhc-------CCCEEEEEeeE
Confidence 445555555433333333332111244 4443 4448886521 2 7788888775 46777776664
Q ss_pred CH
Q 014514 380 NY 381 (423)
Q Consensus 380 ~~ 381 (423)
-+
T Consensus 107 AA 108 (215)
T 2f6i_A 107 VA 108 (215)
T ss_dssp EC
T ss_pred hH
Confidence 33
No 133
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.15 E-value=2.3e+02 Score=25.17 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=54.9
Q ss_pred HHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhh
Q 014514 286 ADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 365 (423)
Q Consensus 286 ~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~ 365 (423)
...+...|+ +-+|+|-+.+++.+.++.+-. +|+ .|.+....-++...+- ++.+++.+++.+..
T Consensus 113 ~~~l~~~G~-----~Vi~LG~~vp~e~iv~~~~~~------~~d--~v~l~~S~l~~~~~~~---~~~~i~~l~~~~~~- 175 (215)
T 3ezx_A 113 TTMLGANGF-----QIVDLGVDVLNENVVEEAAKH------KGE--KVLLVGSALMTTSMLG---QKDLMDRLNEEKLR- 175 (215)
T ss_dssp HHHHHHTSC-----EEEECCSSCCHHHHHHHHHHT------TTS--CEEEEEECSSHHHHTH---HHHHHHHHHHTTCG-
T ss_pred HHHHHHCCC-----eEEEcCCCCCHHHHHHHHHHc------CCC--EEEEEchhcccCcHHH---HHHHHHHHHHcCCC-
Confidence 355555432 448999999999887765322 454 4444222233322222 37777778776421
Q ss_pred hcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHH
Q 014514 366 KAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 418 (423)
Q Consensus 366 ~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~ 418 (423)
.+.||++ ||.-... ++-.+ .|-..| ..+..+||+.+-++
T Consensus 176 --~~v~v~v--GG~~~~~--~~a~~----iGad~~----~~dA~~av~~a~~l 214 (215)
T 3ezx_A 176 --DSVKCMF--GGAPVSD--KWIEE----IGADAT----AENAAEAAKVALEV 214 (215)
T ss_dssp --GGSEEEE--ESSSCCH--HHHHH----HTCCBC----CSSHHHHHHHHHHT
T ss_pred --CCCEEEE--ECCCCCH--HHHHH----hCCeEE----ECCHHHHHHHHHHh
Confidence 1455544 4432221 12233 465444 47888888776554
No 134
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=35.35 E-value=1.9e+02 Score=24.22 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=45.2
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCC-chhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA-NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~-~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
.| ++.+|+.+..+++.+-+. -|+-+.++|.-+++.+ +..+.. ..+.++++. .+.-++ .+ +.
T Consensus 41 ~D--yaHnP~si~a~l~al~~~---~~~~riivvf~~g~~s~r~k~~~---~~~~~~~~~-------aD~vi~--~~-~~ 102 (163)
T 3mvn_A 41 DD--FAHHPTAITATIDALRAK---VGQQRILAVLEPRSNTMKMGVHK---HELATSLQD-------ADSVFI--YQ-PP 102 (163)
T ss_dssp EE--CCCSHHHHHHHHHHHHHH---HTTSCEEEEECCC---------C---HHHHHHHTT-------CSEEEE--EC-C-
T ss_pred Ec--CCCCHHHHHHHHHHHHHh---cCCCcEEEEECCCCcchhhHHHH---HHHHHHHhc-------CCEEEE--EC-CC
Confidence 56 678888999998887542 1333434443356543 322222 333333321 122222 33 33
Q ss_pred HHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 381 YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+.. ..+.+.....+.+++++ .+.++|++.+.+.++
T Consensus 103 ~~~--~~~~~~~~~~~~~~~~~---~d~~eai~~~~~~~~ 137 (163)
T 3mvn_A 103 TIE--WQVSEVLANLAQPAISA---DDVDELVMRIVQQAK 137 (163)
T ss_dssp -----CCHHHHHTTCCSCEEEE---SSHHHHHHHHHHHCC
T ss_pred Ccc--cCHHHHHhhCCCCeEEE---CCHHHHHHHHHHhCC
Confidence 211 11222222244455544 689999999988764
No 135
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=34.50 E-value=3e+02 Score=25.98 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=60.7
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec--Cc---------------------------------CCch
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GG---------------------------------IANF 344 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~--gg---------------------------------i~~~ 344 (423)
-..++..+.+.+.+.+.++-+-+ ||+++++||-.| .+ +.+|
T Consensus 66 ~~~~lp~~~s~~ell~~I~~lN~----D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g~~~~~Pc 141 (288)
T 1b0a_A 66 RSYDLPETTSEAELLELIDTLNA----DNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPC 141 (288)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTTCCSSCCH
T ss_pred EEEECCCCCCHHHHHHHHHHhcC----CCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCCCCCCCCC
Confidence 34678899999988888877766 999999999873 33 3454
Q ss_pred hHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCC-CCHHHHHH
Q 014514 345 TDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPE-ATMTGICK 413 (423)
Q Consensus 345 ~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~-~~~~~av~ 413 (423)
| .+|+++.++.+.... .++.+++- .++.--...-.+|.. .|--+++.... .++.+.++
T Consensus 142 T-----p~gi~~ll~~~~i~l--~gk~vvVIG~s~iVG~p~A~lL~~----~gAtVtv~hs~t~~L~~~~~ 201 (288)
T 1b0a_A 142 T-----PRGIVTLLERYNIDT--FGLNAVVIGASNIVGRPMSMELLL----AGCTTTVTHRFTKNLRHHVE 201 (288)
T ss_dssp H-----HHHHHHHHHHTTCCC--TTCEEEEECCCTTTHHHHHHHHHT----TTCEEEEECSSCSCHHHHHH
T ss_pred c-----HHHHHHHHHHcCCCC--CCCEEEEECCChHHHHHHHHHHHH----CCCeEEEEeCCchhHHHHhc
Confidence 3 389999998875332 23444444 333223444445544 56666655322 34444443
No 136
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=34.22 E-value=49 Score=30.33 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEe---CCCCHHHHHHHHH
Q 014514 327 DPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR---GGPNYQTGLAKMR 389 (423)
Q Consensus 327 ~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl---~G~~~~~a~~~l~ 389 (423)
++++++|++.+ |||.... . ..|.+.++. .++||++.+ +|.-.-.|-.++-
T Consensus 36 ~~~~~~Ivl~inspGG~v~~---~---~~i~~~i~~-------~~~PVia~v~p~~G~AasaG~~ia~ 90 (230)
T 3viv_A 36 QDNAEAIIIELDTPGGRADA---M---MNIVQRIQQ-------SKIPVIIYVYPPGASAASAGTYIAL 90 (230)
T ss_dssp HTTCSEEEEEEEBSCEEHHH---H---HHHHHHHHT-------CSSCEEEEECSTTCEEETHHHHHHH
T ss_pred cCCCCEEEEEEeCCCcCHHH---H---HHHHHHHHh-------CCCCEEEEEecCCCEEhHHHHHHHH
Confidence 34688877755 7775321 1 567776654 379999999 8876666655554
No 137
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=33.05 E-value=2.2e+02 Score=26.52 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=54.2
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc---hhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN---FTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~---~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
+|+|-+.+++.+.++.+- .+.+.|.+-.. ++. ..+-. +.+++.+++.+.. .+.| +.+||
T Consensus 161 i~LG~~vp~e~iv~aa~e--------~~~d~VglS~l--~t~~~~~~~~~---~~~i~~L~~~g~~---~~i~--vivGG 222 (262)
T 1xrs_B 161 YNLGSQVANEDFIKKAVE--------LEADVLLVSQT--VTQKNVHIQNM---THLIELLEAEGLR---DRFV--LLCGG 222 (262)
T ss_dssp EECCSSBCHHHHHHHHHH--------TTCSEEEEECC--CCTTSHHHHHH---HHHHHHHHHTTCG---GGSE--EEEEC
T ss_pred EECCCCCCHHHHHHHHHH--------cCCCEEEEEee--cCCccchHHHH---HHHHHHHHhcCCC---CCCE--EEEEC
Confidence 799999999988776522 34444554432 222 22222 5677777765310 1244 45566
Q ss_pred CCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 379 PNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 379 ~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.... .+.+.+ .|... +|++.+...+.+...++...
T Consensus 223 ~~~~--~~~a~~----iGad~-~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 223 PRIN--NEIAKE----LGYDA-GFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp TTCC--HHHHHT----TTCSE-EECTTCCHHHHHHHHHHHHH
T ss_pred CcCC--HHHHHH----cCCeE-EECCchHHHHHHHHHHHHHH
Confidence 5433 344555 78654 46667777777777766543
No 138
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=33.04 E-value=2.5e+02 Score=24.52 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=52.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
+-+++|-+.+.+.+.++++-. +|+ .|.+-. .++....-. +.+++.+++.+. ..+.||++.=.+.
T Consensus 118 ~v~~LG~~vp~~~l~~~~~~~------~~d--~v~lS~--~~~~~~~~~---~~~i~~l~~~~~---~~~~~v~vGG~~~ 181 (210)
T 1y80_A 118 TVYNLGVDIEPGKFVEAVKKY------QPD--IVGMSA--LLTTTMMNM---KSTIDALIAAGL---RDRVKVIVGGAPL 181 (210)
T ss_dssp EEEECCSSBCHHHHHHHHHHH------CCS--EEEEEC--CSGGGTHHH---HHHHHHHHHTTC---GGGCEEEEESTTC
T ss_pred EEEECCCCCCHHHHHHHHHHc------CCC--EEEEec--cccccHHHH---HHHHHHHHhcCC---CCCCeEEEECCCC
Confidence 447899999999888776433 454 344433 222222223 667777776531 0135655543333
Q ss_pred CHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 014514 380 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 419 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~ 419 (423)
+.+ ..++ .|...| ..+..+|++.+-++.
T Consensus 182 ~~~----~~~~----~gad~~----~~da~~av~~~~~l~ 209 (210)
T 1y80_A 182 SQD----FADE----IGADGY----APDAASATELCRQLL 209 (210)
T ss_dssp CHH----HHHH----HTCSEE----CSSHHHHHHHHHHHC
T ss_pred CHH----HHHH----cCCeEE----ECCHHHHHHHHHHHh
Confidence 322 2243 576655 378899988877653
No 139
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=32.88 E-value=3.2e+02 Score=25.78 Aligned_cols=90 Identities=14% Similarity=0.064 Sum_probs=56.1
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec--CcC----------------------------------C
Q 014514 299 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGI----------------------------------A 342 (423)
Q Consensus 299 aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~--ggi----------------------------------~ 342 (423)
.-...+..+.+.+.+.+.++-+-+ ||++++++|-.| .++ .
T Consensus 66 ~~~~~lp~~~s~~ell~~I~~lN~----d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~ 141 (285)
T 3l07_A 66 SQVITLPEHTTESELLELIDQLNN----DSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE 141 (285)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHT----CTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHHHHHTCTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhheeehhcCCCCCCC
Confidence 455677888888888888877766 889999988764 333 2
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecC
Q 014514 343 NFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYG 403 (423)
Q Consensus 343 ~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~ 403 (423)
+| |..|+++.++++.-.+ .++.+++- .++.--...-..|.. .|.-+.+..
T Consensus 142 Pc-----Tp~gv~~lL~~~~i~l--~Gk~vvVIG~s~iVG~p~A~lL~~----~gAtVtv~h 192 (285)
T 3l07_A 142 SC-----TPKGIMTMLREYGIKT--EGAYAVVVGASNVVGKPVSQLLLN----AKATVTTCH 192 (285)
T ss_dssp CH-----HHHHHHHHHHHTTCCC--TTCEEEEECCCTTTHHHHHHHHHH----TTCEEEEEC
T ss_pred CC-----CHHHHHHHHHHhCCCC--CCCEEEEECCCchhHHHHHHHHHH----CCCeEEEEe
Confidence 22 2268899888875332 23444444 555434444445554 566565543
No 140
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=32.16 E-value=2.9e+02 Score=25.77 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=67.8
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|.+=-|..+.+.+.+.++.+++ .++++++++-.+|=...-...+ -..++++..+.. +- |++-.|+++
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~eE-r~~v~~~~~~~~------~g-viaGvg~~~ 76 (293)
T 1w3i_A 10 PFTKDNRIDKEKLKIHAENLIR-----KGIDKLFVNGTTGLGPSLSPEE-KLENLKAVYDVT------NK-IIFQVGGLN 76 (293)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHTTC------SC-EEEECCCSC
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHc------CC-EEEecCCCC
Confidence 4444588999999999999985 6899988877443322221111 145566655542 22 888899999
Q ss_pred HHHHHHHHHhhccccCC-------ceeecCCCCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gi-------p~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
..++.+..+.+ +++|. |.| +. ..|.++.++.+-..+.+
T Consensus 77 t~~ai~la~~A-~~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a 121 (293)
T 1w3i_A 77 LDDAIRLAKLS-KDFDIVGIASYAPYY-YP-RMSEKHLVKYFKTLCEV 121 (293)
T ss_dssp HHHHHHHHHHG-GGSCCSEEEEECCCS-CS-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCCC-CC-CCCHHHHHHHHHHHHhh
Confidence 99998887764 33552 433 21 04778888887777654
No 141
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=29.86 E-value=1.2e+02 Score=32.76 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=57.1
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 302 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 302 lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
+|+|.+.+++.+.++. .+ .+.+.|.+ ++-.+...+.. ..+++.+++.+. .++ .+-.||...
T Consensus 628 i~lG~~v~~eeiv~aA---~e-----~~adiVgl--Ssl~~~~~~~~---~~vi~~L~~~G~----~~i--~VivGG~~p 688 (727)
T 1req_A 628 DVGPLFQTPEETARQA---VE-----ADVHVVGV--SSLAGGHLTLV---PALRKELDKLGR----PDI--LITVGGVIP 688 (727)
T ss_dssp EECCTTBCHHHHHHHH---HH-----TTCSEEEE--EECSSCHHHHH---HHHHHHHHHTTC----TTS--EEEEEESCC
T ss_pred EeCCCCCCHHHHHHHH---HH-----cCCCEEEE--eeecHhHHHHH---HHHHHHHHhcCC----CCC--EEEEcCCCc
Confidence 8899999999877664 32 34443433 33333334444 788888888652 233 444565221
Q ss_pred HHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 382 QTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 382 ~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+-...+++ .|+.-| |++-++..+.+...++...
T Consensus 689 ~~d~~~l~~----~GaD~~-f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 689 EQDFDELRK----DGAVEI-YTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp GGGHHHHHH----TTEEEE-ECTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHh----CCCCEE-EcCCccHHHHHHHHHHHHH
Confidence 222235666 888755 5566888888888877653
No 142
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=29.82 E-value=2.4e+02 Score=26.27 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=67.1
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|.+=-|..+.+.+.+-++.+++ .++++++++-.+|=...-...+ -..++++..+.. +- |++-.|+++
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~------~g-ViaGvg~~~ 76 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLE-----KGIDAIFVNGTTGLGPALSKDE-KRQNLNALYDVT------HK-LIFQVGSLN 76 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHTTTC------SC-EEEECCCSC
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh------CC-eEEeeCCCC
Confidence 3444588999999999999985 6899988877544322222111 134555554432 22 888899999
Q ss_pred HHHHHHHHHhhccccC-------CceeecCCCCCHHHHHHHHHHHhHh
Q 014514 381 YQTGLAKMRALGEELG-------IPLEVYGPEATMTGICKQAIDCIMS 421 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~g-------ip~~~~~~~~~~~~av~~~~~~~~~ 421 (423)
..++.+..+.+ +++| -|.| +. ..|.++.++.+-..+.+
T Consensus 77 t~~ai~la~~A-~~~Gadavlv~~P~y-~~-~~s~~~l~~~f~~va~a 121 (288)
T 2nuw_A 77 LNDVMELVKFS-NEMDILGVSSHSPYY-FP-RLPEKFLAKYYEEIARI 121 (288)
T ss_dssp HHHHHHHHHHH-HTSCCSEEEECCCCS-SC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCcC-CC-CCCHHHHHHHHHHHHHh
Confidence 99998877654 3345 2433 22 04778888888777654
No 143
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=28.86 E-value=2.2e+02 Score=24.38 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=76.6
Q ss_pred CcEEEEEcC------ccHHHHHHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe---c
Q 014514 270 GRIWTMVAG------GGASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 338 (423)
Q Consensus 270 g~I~ii~NG------~G~~~~~~D~l~~~g~gg~~aN~--lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~---~ 338 (423)
-+|+|+..= ..+---+.|.+..+ |.+..|. ++..|.-. +--+.+.+.+ ....|+++..- =
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIalG~VIr 83 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRH--GGREEDITLVRVPGSWE---IPVAAGELAR----KEDIDAVIAIGVLIR 83 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHT----CTTCCEEEEEEEEEC
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 356666421 13444567888885 5555543 45555544 5566666665 56788877766 2
Q ss_pred CcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 339 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 339 ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
|++..++-|+ +.+.+.+-+..- ..++||.-. +.-.+.++|.+. +|...- .-=.||+..+++
T Consensus 84 G~T~Hfd~Va---~~vs~gl~~v~l---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~~-----nkG~eaA~aale 145 (154)
T 1hqk_A 84 GATPHFDYIA---SEVSKGLANLSL---ELRKPITFGVITADTLEQAIER-------AGTKHG-----NKGWEAALSAIE 145 (154)
T ss_dssp CSSTHHHHHH---HHHHHHHHHHHH---HHTSCEEEEEEEESSHHHHHHH-------EEETTE-----EHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHH-------hccccc-----chHHHHHHHHHH
Confidence 8888877777 666665554432 247997766 666778887543 332211 344788999998
Q ss_pred HhH
Q 014514 418 CIM 420 (423)
Q Consensus 418 ~~~ 420 (423)
+++
T Consensus 146 m~~ 148 (154)
T 1hqk_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 144
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=28.84 E-value=52 Score=28.25 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhccccCCceee
Q 014514 369 RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEV 401 (423)
Q Consensus 369 ~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~ 401 (423)
++|+++.=+|.....+.+.++++.+..|+|++.
T Consensus 35 krPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 578777755554455666677777778888873
No 145
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=28.10 E-value=56 Score=24.91 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCcCCceEEeeCC
Q 014514 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST 38 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~~ 38 (423)
.|++.|.++||++| +|.-...+....+++
T Consensus 14 iLs~eEk~~lL~~y-----~i~~~qLPrI~~~DP 42 (78)
T 1hmj_A 14 IVPKEEVEEILKRY-----NIKIQQLPKIYEDDP 42 (78)
T ss_pred ECCHHHHHHHHHHc-----CCCHHHCCeeeCcCH
Confidence 48999999999999 875444444454444
No 146
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.85 E-value=2.4e+02 Score=25.93 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=54.9
Q ss_pred CcEEEEEcCccHHH------HHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc
Q 014514 270 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 343 (423)
Q Consensus 270 g~I~ii~NG~G~~~------~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~ 343 (423)
.+|++++.-.+... -..+++..+ |.+.-...-..++.+.+.-+++++-+++ .+|..++++. .
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 249 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA-------S 249 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHHH---TTCCCSEEEE-------S
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHC--CCCCCcceEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------C
Confidence 57888865433221 134667664 4433222234567788877777777775 3677887763 2
Q ss_pred hhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCC
Q 014514 344 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGP 379 (423)
Q Consensus 344 ~~~va~~~~~ii~a~~~~~~~~~~~~~p---vv~rl~G~ 379 (423)
++.+| -|+++++++.+. ++| -++...+.
T Consensus 250 nd~~A---~g~~~al~~~G~-----~vP~di~vvg~D~~ 280 (338)
T 3dbi_A 250 NDDMA---IGAMKALHERGV-----AVPEQVSVIGFDDI 280 (338)
T ss_dssp SHHHH---HHHHHHHHHTTC-----CTTTTCEEEEESCC
T ss_pred ChHHH---HHHHHHHHHcCC-----CCCCCeEEEEECCh
Confidence 36677 899999999863 344 34456664
No 147
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=27.69 E-value=2.9e+02 Score=23.65 Aligned_cols=125 Identities=13% Similarity=0.015 Sum_probs=76.6
Q ss_pred CcEEEEEcC------ccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec---Cc
Q 014514 270 GRIWTMVAG------GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG---GG 340 (423)
Q Consensus 270 g~I~ii~NG------~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~---gg 340 (423)
-+|+|+..- ..+---+.|.+..+ |.+ .| +|+--=|-+-.+--+.+.+.+ ....|+++..-+ |+
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--Gv~-~~-i~v~~VPGafEiP~aa~~la~----~~~yDavIaLG~VIrG~ 85 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKY--SVN-ED-IDVVWVPGAYELGVTAQALGK----SGKYHAIVCLGAVVKGD 85 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCC-SC-CEEEEESSHHHHHHHHHHHHH----TTCCSEEEEEEECCCCS
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCC-Cc-eEEEECCcHHHHHHHHHHHHh----cCCCCEEEEecccccCC
Confidence 356666432 13444467888885 544 33 333333444446667777766 667888877762 88
Q ss_pred CCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHh
Q 014514 341 IANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 419 (423)
Q Consensus 341 i~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~ 419 (423)
+..++-|+ +.+.+.+-+..- ..++||.-. +.-.+.+.|.+. +|...- .-=.||+..+++++
T Consensus 86 T~Hfd~Va---~~v~~gl~~v~L---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~~-----nKG~eaA~aAlem~ 147 (156)
T 1c2y_A 86 TSHYDAVV---NSASSGVLSAGL---NSGVPCVFGVLTCDNMDQAINR-------AGGKAG-----NKGAESALTAIEMA 147 (156)
T ss_dssp STHHHHHH---HHHHHHHHHHHH---HHTSCEEEEEECCSSHHHHHHH-------EEETTE-----EHHHHHHHHHHHHH
T ss_pred chHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHH-------cCCccc-----chHHHHHHHHHHHH
Confidence 88887777 666666555432 247997776 777788876543 332212 23478999999887
Q ss_pred H
Q 014514 420 M 420 (423)
Q Consensus 420 ~ 420 (423)
+
T Consensus 148 ~ 148 (156)
T 1c2y_A 148 S 148 (156)
T ss_dssp H
T ss_pred H
Confidence 6
No 148
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=27.35 E-value=2.8e+02 Score=25.37 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=51.9
Q ss_pred EEecCCCcEEEEEcC-ccHHHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCC
Q 014514 264 TVLNPKGRIWTMVAG-GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 342 (423)
Q Consensus 264 ~~v~l~g~I~ii~NG-~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~ 342 (423)
+|..|+|++++||.| +|+|-.+.-.+... |.+. +.-+-+.++..++.+.+-+ .+.++.. +..=++
T Consensus 1 Sy~sL~gKvalVTGas~GIG~aiA~~la~~--Ga~V-----v~~~~~~~~~~~~~~~i~~-----~g~~~~~--~~~Dvt 66 (254)
T 4fn4_A 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALN--DSIV-----VAVELLEDRLNQIVQELRG-----MGKEVLG--VKADVS 66 (254)
T ss_dssp CCGGGTTCEEEEETTTSHHHHHHHHHHHHT--TCEE-----EEEESCHHHHHHHHHHHHH-----TTCCEEE--EECCTT
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEE-----EEEECCHHHHHHHHHHHHh-----cCCcEEE--EEccCC
Confidence 466789999999866 68999998888875 4332 1223456666666665543 3344332 234455
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccceEEEE
Q 014514 343 NFTDVATTFNGIIRALREKESKLKAARMHIFVR 375 (423)
Q Consensus 343 ~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r 375 (423)
+.+++. +.+-++.++++ ++-+++.
T Consensus 67 ~~~~v~---~~~~~~~~~~G------~iDiLVN 90 (254)
T 4fn4_A 67 KKKDVE---EFVRRTFETYS------RIDVLCN 90 (254)
T ss_dssp SHHHHH---HHHHHHHHHHS------CCCEEEE
T ss_pred CHHHHH---HHHHHHHHHcC------CCCEEEE
Confidence 666655 43334444443 3446665
No 149
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=27.23 E-value=2e+02 Score=22.46 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=38.3
Q ss_pred CCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCC
Q 014514 328 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEAT 407 (423)
Q Consensus 328 ~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~ 407 (423)
...+.+++.. +++.-++-.. ...++...++.... .+.+++. .|.+ ..-+++|+-.+-..-+++| +|
T Consensus 46 ~~~~~vvlDl-s~v~~iDSsG--l~~L~~~~~~~~~~---~g~~l~l--~~~~-~~v~~~l~~~gl~~~~~i~-----~~ 111 (121)
T 3t6o_A 46 AQPRKVLIDL-EGVEFFGSSF--IELLVRGWKRIKED---QQGVFAL--CSVS-PYCVEVLQVTHIDEVWPRY-----ST 111 (121)
T ss_dssp SSSCEEEEEC-TTCCEECHHH--HHHHHHHHHHHTTS---TTCEEEE--ESCC-HHHHHHHTTCSGGGGSCEE-----SS
T ss_pred cCCCeEEEEC-CCCCEEcHHH--HHHHHHHHHHHHHh---cCCEEEE--EeCC-HHHHHHHHHhCccceeccc-----CC
Confidence 3455555544 4555444433 24555555554310 2344443 3443 4556777763333335555 89
Q ss_pred HHHHHHHH
Q 014514 408 MTGICKQA 415 (423)
Q Consensus 408 ~~~av~~~ 415 (423)
.++|+..+
T Consensus 112 ~~~Al~~~ 119 (121)
T 3t6o_A 112 KQEALLAM 119 (121)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
No 150
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=26.76 E-value=1.8e+02 Score=28.41 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=40.9
Q ss_pred eeeccCCC----CHHHHHHHHHHHHhhhccCCCCCEEEEEe--cC--c---CCchhHHhhhHHHHHHHHHHhhhhh-hcc
Q 014514 301 YAEYSGAP----NEEEVLQYARVVIDCATADPDGRKRALLI--GG--G---IANFTDVATTFNGIIRALREKESKL-KAA 368 (423)
Q Consensus 301 ~lDlgG~a----~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~g--g---i~~~~~va~~~~~ii~a~~~~~~~~-~~~ 368 (423)
.+.+||+. +.+.|.++++.+- +..+.+-||+ |. | +.+. +.. ..+++++++..... ...
T Consensus 150 ~vniggn~~t~~~~~dy~~~~~~~~------~~ad~ielNisCPn~~G~~~l~~~-~~l---~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 150 GVNLGKNKTSVDAAEDYAEGVRVLG------PLADYLVVNVSSPNTAGLRSLQGK-AEL---RRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp EEEECCCTTCSCHHHHHHHHHHHHG------GGCSEEEEECCCTTSTTGGGGGSH-HHH---HHHHHHHHHHHHTSCGGG
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHh------hhCCEEEEECCCCCCCCccccCCH-HHH---HHHHHHHHHHHhhccccC
Confidence 36677763 5688888888774 3568899998 21 1 1222 222 45666665542110 014
Q ss_pred cceEEEEeCCC
Q 014514 369 RMHIFVRRGGP 379 (423)
Q Consensus 369 ~~pvv~rl~G~ 379 (423)
++||++++.-.
T Consensus 220 ~~Pv~vKi~p~ 230 (367)
T 3zwt_A 220 RPAVLVKIAPD 230 (367)
T ss_dssp CCEEEEEECSC
T ss_pred CceEEEEeCCC
Confidence 68999996543
No 151
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=26.75 E-value=2.4e+02 Score=24.11 Aligned_cols=124 Identities=12% Similarity=0.068 Sum_probs=76.8
Q ss_pred CcEEEEEcC------ccHHHHHHHHHhccCCCCCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe---c
Q 014514 270 GRIWTMVAG------GGASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---G 338 (423)
Q Consensus 270 g~I~ii~NG------~G~~~~~~D~l~~~g~gg~~aN~--lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~---~ 338 (423)
-+|+|+..= ..+---+.|.+..+ |.+..|. ++..|.-. +--+.+.+.+ ....|+++..- =
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VIr 83 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRH--GVDTNDIDVAWVPGAFE---IPFAAKKMAE----TKKYDAIITLGTVIR 83 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGGG---HHHHHHHHHH----TSCCSEEEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeeeeec
Confidence 356666421 13444567888885 5555543 45555544 5566666665 56788877766 2
Q ss_pred CcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHH
Q 014514 339 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 417 (423)
Q Consensus 339 ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~ 417 (423)
|++..++-|+ +.+.+.+-+..- ..++||.-. +.-.+.++|.+. +|...- .-=.||+..+++
T Consensus 84 G~T~Hfd~V~---~~vs~Gl~~v~l---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~~-----nkG~eaA~aale 145 (154)
T 1rvv_A 84 GATTHYDYVC---NEAAKGIAQAAN---TTGVPVIFGIVTTENIEQAIER-------AGTKAG-----NKGVDCAVSAIE 145 (154)
T ss_dssp CSSSHHHHHH---HHHHHHHHHHHH---HHCSCEEEEEEEESSHHHHHHT-------EEETTE-----EHHHHHHHHHHH
T ss_pred CCchHHHHHH---HHHHHHHHHHHh---hhCCCEEEEecCCCCHHHHHHH-------hccccc-----chHHHHHHHHHH
Confidence 8888887777 666665555432 247997766 666778877432 333212 344788999998
Q ss_pred HhH
Q 014514 418 CIM 420 (423)
Q Consensus 418 ~~~ 420 (423)
+++
T Consensus 146 m~~ 148 (154)
T 1rvv_A 146 MAN 148 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 152
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=26.40 E-value=1.1e+02 Score=29.09 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=19.1
Q ss_pred eCCCCHHHHHHHHHhhccccCCcee
Q 014514 376 RGGPNYQTGLAKMRALGEELGIPLE 400 (423)
Q Consensus 376 l~G~~~~~a~~~l~~~~~~~gip~~ 400 (423)
..|...+++.++|++++++.|+|+.
T Consensus 68 f~Glg~~~GL~~L~~~~~e~Glp~~ 92 (288)
T 3tml_A 68 FRGLGMDEGLRILSEVKRQLGLPVL 92 (288)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCEE
T ss_pred cCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 4455568999999999999999987
No 153
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.17 E-value=2.8e+02 Score=24.87 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCcEEEEEcCccHHHH------HHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCC
Q 014514 269 KGRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 342 (423)
Q Consensus 269 ~g~I~ii~NG~G~~~~------~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~ 342 (423)
..+|++++.-.+.... ..+++..+ |.....-.-..++.+.+.-+++++-+|+ ..+..++|+ +
T Consensus 126 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~-------~ 193 (294)
T 3qk7_A 126 HQRIAFVSTDARISYVDQRLQGYVQTMSEA--GLMPLAGYLQKADPTRPGGYLAASRLLA---LEVPPTAII-------T 193 (294)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHHHHHTT--TCCCCTTCEEEECSSHHHHHHHHHHHHH---SSSCCSEEE-------E
T ss_pred CceEEEEeCCcccchHHHHHHHHHHHHHHC--CCCCChhHeecCCCCHHHHHHHHHHHHc---CCCCCcEEE-------E
Q ss_pred chhHHhhhHHHHHHHHHHhhhhhhcccce
Q 014514 343 NFTDVATTFNGIIRALREKESKLKAARMH 371 (423)
Q Consensus 343 ~~~~va~~~~~ii~a~~~~~~~~~~~~~p 371 (423)
.++.+| -|+++++++.+ .++|
T Consensus 194 ~nd~~A---~g~~~al~~~G-----~~vP 214 (294)
T 3qk7_A 194 DCNMLG---DGVASALDKAG-----LLGG 214 (294)
T ss_dssp SSHHHH---HHHHHHHHHTT-----CSST
T ss_pred CCHHHH---HHHHHHHHHcC-----CCCC
No 154
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=25.71 E-value=2.5e+02 Score=22.52 Aligned_cols=78 Identities=9% Similarity=-0.025 Sum_probs=41.8
Q ss_pred CCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecC---CCC
Q 014514 330 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYG---PEA 406 (423)
Q Consensus 330 ~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~---~~~ 406 (423)
.+.+++. ++++...+..+. ..+.+..++... .+.. +.+.|.+ ..-+++|+. +|+.-. ++ .+.
T Consensus 52 ~~~vvlD-ls~v~~iDssgl--~~L~~~~~~~~~----~g~~--l~l~~~~-~~v~~~l~~----~gl~~~-~~~~~i~~ 116 (135)
T 4dgf_A 52 PKVFILR-MRRVPVIDATGM--HALWEFQESCEK----RGTI--LLLSGVS-DRLYGALNR----FGFIEA-LGEERVFD 116 (135)
T ss_dssp CSEEEEE-CTTCSCBCHHHH--HHHHHHHHHHHH----HTCE--EEEESCC-HHHHHHHHH----HTHHHH-HCGGGBCS
T ss_pred CcEEEEE-cCCCCccCHHHH--HHHHHHHHHHHH----CCCE--EEEEcCC-HHHHHHHHH----cCChhh-cCccceeC
Confidence 4444444 455555555442 556665555542 2333 3344544 345567765 554210 00 128
Q ss_pred CHHHHHHHHHHHhHhc
Q 014514 407 TMTGICKQAIDCIMSA 422 (423)
Q Consensus 407 ~~~~av~~~~~~~~~~ 422 (423)
|.++|+..+-+...+|
T Consensus 117 t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 117 HIDKALAYAKLLVETA 132 (135)
T ss_dssp SHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999988877665
No 155
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=25.68 E-value=3.3e+02 Score=27.49 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=23.8
Q ss_pred CCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 327 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 327 ~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
+|+++.| .|+| ++.+. +.|.++..++ -+|++.-+||.+
T Consensus 238 hp~v~~I---~FTG---S~~~G---~~i~~~aa~~-------~k~v~lElGGk~ 275 (497)
T 3i44_A 238 HPDLEMI---SFTG---STRAG---KDISKNASNT-------LKRVCLELGGKG 275 (497)
T ss_dssp CTTCCEE---EEES---CHHHH---HHHHHHHHTT-------TCEEEEECCCCC
T ss_pred CCCcCEE---EEeC---cHHHH---HHHHHHHhhc-------CCceeeccCCCC
Confidence 8888833 3444 24455 7776655432 478888899965
No 156
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=25.38 E-value=1.2e+02 Score=28.57 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=40.2
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEE--EEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA--LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 378 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vl--v~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G 378 (423)
-+-++|..+.+........++.+-..|+ .+.|+ ||.|||-... + ..|.++++.. +.||++..+|
T Consensus 84 II~l~G~I~d~~a~~iiaqL~~l~~ed~-~k~I~L~INSPGGsV~a---g---~aIyd~I~~~-------k~pV~t~v~G 149 (277)
T 1tg6_A 84 IVCVMGPIDDSVASLVIAQLLFLQSESN-KKPIHMYINSPGGVVTA---G---LAIYDTMQYI-------LNPICTWCVG 149 (277)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHHHHCS-SSCEEEEEEECCBCHHH---H---HHHHHHHHHS-------CSCEEEEEEE
T ss_pred EEEEcCEECHHHHHHHHHHHHHHHhcCC-CCCEEEEEECCCCCHHH---H---HHHHHHHHhc-------CCCEEEEEcc
Confidence 3667777777655555555543222244 45443 4448885421 2 6778887765 4678887777
Q ss_pred CCHHHH
Q 014514 379 PNYQTG 384 (423)
Q Consensus 379 ~~~~~a 384 (423)
--+-.|
T Consensus 150 ~AASaG 155 (277)
T 1tg6_A 150 QAASMG 155 (277)
T ss_dssp EEETHH
T ss_pred EeHHHH
Confidence 544333
No 157
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=25.35 E-value=1.9e+02 Score=22.25 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=36.0
Q ss_pred EEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHH
Q 014514 332 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 411 (423)
Q Consensus 332 ~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~a 411 (423)
.++++ ++++.-.+..+ ...++...++.+. .+..+. +.|.+ ..-+++|+-.+-..-+++| +|.++|
T Consensus 44 ~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~l~~~gl~~~~~i~-----~~~~~A 108 (117)
T 4hyl_A 44 KMILD-LREVSYMSSAG--LRVLLSLYRHTSN----QQGALV--LVGVS-EEIRDTMEITGFWNFFTAC-----ASMDEA 108 (117)
T ss_dssp EEEEE-EEEEEEECHHH--HHHHHHHHHHHHH----TTCEEE--EECCC-HHHHHHHHHHTCGGGCEEE-----SCHHHH
T ss_pred eEEEE-CCCCcEEcHHH--HHHHHHHHHHHHH----cCCEEE--EEeCC-HHHHHHHHHhCccceeeec-----CCHHHH
Confidence 34444 45555444433 2455555555432 244443 33443 4566777763333335555 899999
Q ss_pred HHHH
Q 014514 412 CKQA 415 (423)
Q Consensus 412 v~~~ 415 (423)
+..+
T Consensus 109 l~~~ 112 (117)
T 4hyl_A 109 LRIL 112 (117)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 158
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=25.28 E-value=3.1e+02 Score=23.55 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=78.5
Q ss_pred CcEEEEEcC------ccHHHHHHHHHhc-cCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe---
Q 014514 270 GRIWTMVAG------GGASVIYADTVGD-LGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI--- 337 (423)
Q Consensus 270 g~I~ii~NG------~G~~~~~~D~l~~-~g~gg~~aN--~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--- 337 (423)
-||+|+..= -.+---+.|.+.. + |.+..| -++..|.-. +--+.+.+.+ ....|+++..-
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~--Gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~VI 88 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKH--DVKLENIDIESVPGSWE---LPQGIRASIA----RNTYDAVIGIGVLI 88 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHH--CCCGGGEEEEECSSGGG---HHHHHHHHHH----HSCCSEEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEecccc
Confidence 357766432 1344446788887 7 555555 455666544 5556666665 45688877665
Q ss_pred cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHHHHHHHHHhhccccCCc-eeecCCCCCHHHHHHHH
Q 014514 338 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQTGLAKMRALGEELGIP-LEVYGPEATMTGICKQA 415 (423)
Q Consensus 338 ~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~~a~~~l~~~~~~~gip-~~~~~~~~~~~~av~~~ 415 (423)
=|++..++-|+ +.+.+.+-+..- ..++||.-. +.-.+.++|.+. +|.. .. .-=.||+..+
T Consensus 89 rG~T~Hfd~Va---~~v~~Gl~~v~L---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~~~-----nKG~eaA~aa 150 (159)
T 1kz1_A 89 KGSTMHFEYIS---EAVVHGLMRVGL---DSGVPVILGLLTVLNEEQALYR-------AGLNGGH-----NHGNDWGSAA 150 (159)
T ss_dssp CCSSSHHHHHH---HHHHHHHHHHHH---HHCCCEEEEEEEESSHHHHHHH-------BTCTTCC-----BHHHHHHHHH
T ss_pred cCCchHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHH-------hCCcccc-----chHHHHHHHH
Confidence 38888887777 666666555432 247997776 777788887554 3321 11 2348999999
Q ss_pred HHHhHh
Q 014514 416 IDCIMS 421 (423)
Q Consensus 416 ~~~~~~ 421 (423)
+++++-
T Consensus 151 lem~~l 156 (159)
T 1kz1_A 151 VEMGLK 156 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998763
No 159
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=25.25 E-value=1.3e+02 Score=26.92 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=37.3
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEe--cCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 014514 304 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 381 (423)
Q Consensus 304 lgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~--~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~ 381 (423)
++|..+.+......+.+..+ ..+++++.|++.+ |||.... + ..|.++++.. ++||++..+|.-.
T Consensus 50 l~g~I~~~~a~~i~~~L~~l-~~~~~~k~I~l~InSPGG~v~a---g---~~I~~~i~~~-------~~pV~t~v~G~Aa 115 (218)
T 1y7o_A 50 LTGPVEDNMANSVIAQLLFL-DAQDSTKDIYLYVNTPGGSVSA---G---LAIVDTMNFI-------KADVQTIVMGMAA 115 (218)
T ss_dssp EESCBCHHHHHHHHHHHHHH-HHHCTTSCEEEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEEEE
T ss_pred EeCEECHHHHHHHHHHHHHH-HhcCCCCCEEEEEECcCCCHHH---H---HHHHHHHHhc-------CCCEEEEEccEeH
Confidence 44445544333333333211 1255566544444 8875421 2 6677777664 5788888777555
Q ss_pred HHHHHHH
Q 014514 382 QTGLAKM 388 (423)
Q Consensus 382 ~~a~~~l 388 (423)
-.|--++
T Consensus 116 S~G~~Ia 122 (218)
T 1y7o_A 116 SMGTVIA 122 (218)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 160
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=25.12 E-value=2.3e+02 Score=25.89 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=55.5
Q ss_pred HHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhh
Q 014514 286 ADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKL 365 (423)
Q Consensus 286 ~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~ 365 (423)
...+...|+ +-+|+|-+.+++.+..+.+-. +|+ .|.+-. .++....-. +.+++.+++.+
T Consensus 144 a~~L~~~G~-----~Vi~LG~~vp~e~l~~~~~~~------~~d--~V~lS~--l~~~~~~~~---~~~i~~l~~~~--- 202 (258)
T 2i2x_B 144 TALLRANGY-----NVVDLGRDVPAEEVLAAVQKE------KPI--MLTGTA--LMTTTMYAF---KEVNDMLLENG--- 202 (258)
T ss_dssp HHHHHHTTC-----EEEEEEEECCSHHHHHHHHHH------CCS--EEEEEC--CCTTTTTHH---HHHHHHHHTTT---
T ss_pred HHHHHHCCC-----EEEECCCCCCHHHHHHHHHHc------CCC--EEEEEe--eccCCHHHH---HHHHHHHHhcC---
Confidence 355665433 347899999999887765433 455 344433 122222222 66777777754
Q ss_pred hcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 366 KAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 366 ~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+.||++ ||...... +-.+ .|.-.| ..+..+|++.+.++.+
T Consensus 203 --~~~~v~v--GG~~~~~~--~~~~----igad~~----~~da~~av~~~~~l~~ 243 (258)
T 2i2x_B 203 --IKIPFAC--GGGAVNQD--FVSQ----FALGVY----GEEAADAPKIADAIIA 243 (258)
T ss_dssp --CCCCEEE--ESTTCCHH--HHHT----STTEEE----CSSTTHHHHHHHHHHT
T ss_pred --CCCcEEE--ECccCCHH--HHHH----cCCeEE----ECCHHHHHHHHHHHHc
Confidence 2455554 55332211 2223 675444 2677888888877764
No 161
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=23.29 E-value=4.2e+02 Score=24.04 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=34.3
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhcccc-CCceeecCCCCCHHHHHHHHHHHhHhc
Q 014514 369 RMHIFVRRGGPNYQTGLAKMRALGEEL-GIPLEVYGPEATMTGICKQAIDCIMSA 422 (423)
Q Consensus 369 ~~pvv~rl~G~~~~~a~~~l~~~~~~~-gip~~~~~~~~~~~~av~~~~~~~~~~ 422 (423)
++|+|+.--|.+. +..+.|.++.+++ ++|+++. .++.--+..+.++++++
T Consensus 69 g~~~VigTTG~~~-e~~~~l~~aa~~~~~~~vv~a---~N~siGv~ll~~l~~~a 119 (245)
T 1p9l_A 69 GIHAVVGTTGFTA-ERFQQVESWLVAKPNTSVLIA---PNFAIGAVLSMHFAKQA 119 (245)
T ss_dssp TCEEEECCCCCCH-HHHHHHHHHHHTSTTCEEEEC---SCCCHHHHHHHHHHHHH
T ss_pred CCCEEEcCCCCCH-HHHHHHHHHHHhCCCCCEEEE---CCccHHHHHHHHHHHHH
Confidence 6888888667665 4456676655555 8997633 67676677787777765
No 162
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=22.44 E-value=3.1e+02 Score=25.76 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc------hhHHhhhHHHHHHHHHHhhhhh---hcccceEEEEeCCC-
Q 014514 310 EEEVLQYARVVIDCATADPDGRKRALLIGGGIAN------FTDVATTFNGIIRALREKESKL---KAARMHIFVRRGGP- 379 (423)
Q Consensus 310 ~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~------~~~va~~~~~ii~a~~~~~~~~---~~~~~pvv~rl~G~- 379 (423)
.+.|.++++.+- +..+++-+|+....++ ..+.. ..+++++++..+.. ...++||++++...
T Consensus 152 ~~~~~~aa~~~~------~g~d~iein~~sP~~~g~~~~~~~~~~---~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~ 222 (336)
T 1f76_A 152 KDDYLICMEKIY------AYAGYIAINISSPNTPGLRTLQYGEAL---DDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDL 222 (336)
T ss_dssp HHHHHHHHHHHG------GGCSEEEEECCCSSSTTGGGGGSHHHH---HHHHHHHHHHHHHHHHHHTSCCCEEEECCSCC
T ss_pred HHHHHHHHHHHh------ccCCEEEEEccCCCCCCcccccCHHHH---HHHHHHHHHHHHhhhhcccccCceEEEecCCC
Confidence 678888877653 2678888887332222 11222 45667776653110 01268999996654
Q ss_pred CHHHH---HHHHHhhccccCCcee
Q 014514 380 NYQTG---LAKMRALGEELGIPLE 400 (423)
Q Consensus 380 ~~~~a---~~~l~~~~~~~gip~~ 400 (423)
..++. -+.+.+ +|+...
T Consensus 223 ~~~~~~~~a~~l~~----~Gvd~i 242 (336)
T 1f76_A 223 SEEELIQVADSLVR----HNIDGV 242 (336)
T ss_dssp CHHHHHHHHHHHHH----TTCSEE
T ss_pred CHHHHHHHHHHHHH----cCCcEE
Confidence 32332 233444 676643
No 163
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.09 E-value=2.9e+02 Score=25.05 Aligned_cols=95 Identities=8% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhccc-ceEEEEeCCCCHHHH
Q 014514 306 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAAR-MHIFVRRGGPNYQTG 384 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~-~pvv~rl~G~~~~~a 384 (423)
++-+.+.-+++++-+++.-..+|++++++. .++.+| -|+++++++.+... +.+ +.+++...+ ...+
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-------~nd~~A---~g~~~al~~~g~~v-P~d~i~vv~g~D~--~~~~ 247 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVLS-------PYDGLS---IGIISSLKGVGYGT-KDQPLPVVSGQDA--EVPS 247 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEEC-------SSHHHH---HHHHHHHHHTTCSS-SSSCCCEECCSSC--CHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEEE-------CCCchH---HHHHHHHHHcCCCC-CCCceEEEEecCC--CHHH
Confidence 445566666666666641101377776652 236777 89999999886310 011 334444544 3455
Q ss_pred HHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 385 LAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 385 ~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
...+.. |-+.... ..++.+....+++++.
T Consensus 248 ~~~i~~-----~~~lttv--~~~~~~~g~~a~~~l~ 276 (330)
T 3uug_A 248 VKSIIA-----GEQYSTI--FKDTRELAKVTVNMVN 276 (330)
T ss_dssp HHHHHT-----TSSCCEE--ECCHHHHHHHHHHHHH
T ss_pred HHHHHc-----CCceEEE--ecCHHHHHHHHHHHHH
Confidence 555553 3333222 2566766666666553
No 164
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=21.68 E-value=4.1e+02 Score=23.39 Aligned_cols=17 Identities=18% Similarity=-0.085 Sum_probs=8.5
Q ss_pred EcCccHHHHHHHHHhcc
Q 014514 276 VAGGGASVIYADTVGDL 292 (423)
Q Consensus 276 ~NG~G~~~~~~D~l~~~ 292 (423)
+|-...+-.+++.|...
T Consensus 113 ~D~~~~g~~a~~~L~~~ 129 (292)
T 3k4h_A 113 NDNYTAAREVAEYLISL 129 (292)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred ECcHHHHHHHHHHHHHC
Confidence 44444455555555553
No 165
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=21.59 E-value=4.5e+02 Score=26.72 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=23.5
Q ss_pred CCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 327 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 327 ~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
+|+++.| .|+| ++.+. +.|.++..++ -+|++.-+||.+
T Consensus 238 ~p~vd~I---~FTG---S~~~G---~~i~~~aa~~-------lk~v~lELGGk~ 275 (528)
T 3u4j_A 238 DPNVDMV---AFTG---SVRVG---TKLGEIAART-------VKRVGLELGGKG 275 (528)
T ss_dssp CTTCCEE---EEES---CHHHH---HHHHHHHHTT-------TCEEEEECCCCE
T ss_pred CCCcCEE---EEeC---CHHHH---HHHHHHHHhc-------CCceEEecCCCC
Confidence 8888733 3444 24455 7777655432 477888888865
No 166
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=21.31 E-value=5.1e+02 Score=26.93 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=57.3
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 014514 300 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 379 (423)
Q Consensus 300 N~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~ 379 (423)
+-+|+|-+.+++.+..+++-. +++ .|.+ .+.++...+-. +.+++.+++.+ .+.||++.=...
T Consensus 128 eVi~LG~~vP~e~iv~aa~~~------~~d--iVgL--S~l~t~~~~~m---~~~i~~Lr~~g-----~~i~ViVGGa~~ 189 (579)
T 3bul_A 128 EIVDLGVMVPAEKILRTAKEV------NAD--LIGL--SGLITPSLDEM---VNVAKEMERQG-----FTIPLLIGGATT 189 (579)
T ss_dssp EEEECCSSBCHHHHHHHHHHH------TCS--EEEE--ECCSTHHHHHH---HHHHHHHHHTT-----CCSCEEEESTTC
T ss_pred EEEECCCCCCHHHHHHHHHHc------CCC--EEEE--EecCCCCHHHH---HHHHHHHHHcC-----CCCeEEEEcccc
Confidence 347999999999887776433 444 3333 23333333333 67777777753 357776654445
Q ss_pred CHHHHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 380 NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 380 ~~~~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
+.+.+.+.++. .-.|--.| ..+..+||+.+-++..
T Consensus 190 ~~~~a~~~i~p--~~~GAD~y----a~DA~~Av~~a~~l~~ 224 (579)
T 3bul_A 190 SKAHTAVKIEQ--NYSGPTVY----VQNASRTVGVVAALLS 224 (579)
T ss_dssp CHHHHHHHTGG--GCSSCEEE----CCSHHHHHHHHHHHTC
T ss_pred chhhhhhhhhh--cccCCeEE----ECCHHHHHHHHHHHhc
Confidence 55544323321 01264444 4788999998888764
No 167
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=21.19 E-value=66 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHhhhccCCCCCcCCceEEeeC
Q 014514 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTES 37 (423)
Q Consensus 5 ~L~E~eak~lL~~y~~~~~GI~ipv~~~~~~~~ 37 (423)
.|++.|.+++|++| +|.-...+....++
T Consensus 16 iLs~eEk~~lL~~y-----~i~~~qLP~I~~~D 43 (77)
T 1eik_A 16 ILNESEAKRVLKEL-----DAHPEQLPKIKTTD 43 (77)
T ss_dssp EECHHHHHHHHHHT-----TCCTTTSCCCBTTS
T ss_pred EcCHHHHHHHHHHc-----CCCHHHCCeeeCcC
Confidence 37899999999999 87544444433333
No 168
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=21.03 E-value=6.2e+02 Score=25.62 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=39.7
Q ss_pred HHHHHHHHhccCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHh
Q 014514 282 SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREK 361 (423)
Q Consensus 282 ~~~~~D~l~~~g~gg~~aN~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~ 361 (423)
+.+..+++... | -|.+.+.+--+ +.+. .+.+++ +|+++.|. |+|- +.+. +.|.++..++
T Consensus 205 ~~~l~~l~~ea--G-lP~gvv~vv~g-~~~~----~~~L~~----~p~vd~I~---FTGS---~~vG---~~i~~~aa~~ 263 (521)
T 4e4g_A 205 PIRLAELMIEA--G-LPAGILNVVNG-DKGA----VDAILT----HPDIAAVS---FVGS---TPIA---RYVYGTAAMN 263 (521)
T ss_dssp HHHHHHHHHHT--T-CCTTSEEECCC-CHHH----HHHHHT----CTTCCEEE---EESC---HHHH---HHHHHHHHHT
T ss_pred HHHHHHHHHHh--C-CCcCeEEEEeC-ChHH----HHHHHh----CCCcCEEE---EECC---HHHH---HHHHHHHhhc
Confidence 45556777663 3 35544444322 2332 244566 89988433 4442 4455 7676655432
Q ss_pred hhhhhcccceEEEEeCCCC
Q 014514 362 ESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 362 ~~~~~~~~~pvv~rl~G~~ 380 (423)
-+|++.-+||.+
T Consensus 264 -------lkpv~lELGGk~ 275 (521)
T 4e4g_A 264 -------GKRAQCFGGAKN 275 (521)
T ss_dssp -------TCEEEEECCCCE
T ss_pred -------CCCeeecCCCCC
Confidence 478888899965
No 169
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=20.87 E-value=3.5e+02 Score=24.33 Aligned_cols=73 Identities=10% Similarity=0.087 Sum_probs=36.2
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCc-hhHHhhhHHHHHHHHHHhhhhhhcccceEEEE-eCCCCHH
Q 014514 305 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN-FTDVATTFNGIIRALREKESKLKAARMHIFVR-RGGPNYQ 382 (423)
Q Consensus 305 gG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~-~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~r-l~G~~~~ 382 (423)
||......+..+.+.+.. -...++...++|++.-|..+ ..++. ..++.+++. ++.|++- +|.....
T Consensus 101 G~T~~~~AL~~a~~~l~~-~~~r~~~~~~iIllTDG~~~d~~~~~----~~a~~l~~~-------gi~i~~iGiG~~~~~ 168 (266)
T 4hqo_A 101 GTTSMTAALDEVQKHLND-RVNREKAIQLVILMTDGVPNSKYRAL----EVANKLKQR-------NVRLAVIGIGQGINH 168 (266)
T ss_dssp SCCCHHHHHHHHHHHHHT-TCSCTTSEEEEEEEECSCCSCHHHHH----HHHHHHHHT-------TCEEEEEECSSSCCH
T ss_pred CCCCHHHHHHHHHHHHhh-ccccCCCCeEEEEEccCCCCCchHHH----HHHHHHHHC-------CCEEEEEecCcccCH
Confidence 355555556665444432 00125566677777544443 33333 233334332 5777776 7775544
Q ss_pred HHHHHHH
Q 014514 383 TGLAKMR 389 (423)
Q Consensus 383 ~a~~~l~ 389 (423)
+-++.+.
T Consensus 169 ~~L~~iA 175 (266)
T 4hqo_A 169 QFNRLIA 175 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 4444454
No 170
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=20.80 E-value=2.4e+02 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=21.9
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEec
Q 014514 304 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG 338 (423)
Q Consensus 304 lgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ 338 (423)
.-|+|+.+...+.++.+.+ - +|.+.|.+|
T Consensus 23 ~~GdP~~~~~~~~~~~l~~-----~-aD~IElG~P 51 (271)
T 1ujp_A 23 TAGFPSREGFLQAVEEVLP-----Y-ADLLEIGLP 51 (271)
T ss_dssp ETTSSCHHHHHHHHHHHGG-----G-CSSEEEECC
T ss_pred cCCCCChHHHHHHHHHHHh-----c-CCEEEECCC
Confidence 7889998877777766654 3 888888774
No 171
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.71 E-value=4.7e+02 Score=23.96 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHH
Q 014514 306 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQ 382 (423)
Q Consensus 306 G~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~p---vv~rl~G~~~~ 382 (423)
++.+.+.-+++++-+|+ ++|++++|+ +.++.+| -|+++++++.+ .++| .++..++. .
T Consensus 185 ~~~~~~~~~~~~~~~L~---~~~~~~aI~-------~~~d~~a---~g~~~al~~~G-----~~vP~di~vvg~d~~--~ 244 (350)
T 3h75_A 185 GEWNRERAYRQAQQLLK---RYPKTQLVW-------SANDEMA---LGAMQAARELG-----RKPGTDLLFSGVNSS--P 244 (350)
T ss_dssp CTTCHHHHHHHHHHHHH---HCTTEEEEE-------ESSHHHH---HHHHHHHHHTT-----CCBTTTBEEEEESCC--H
T ss_pred CCCcHHHHHHHHHHHHH---hCCCcCEEE-------ECChHHH---HHHHHHHHHcC-----CCCCCCeEEEecCCC--H
Q ss_pred HHHHHHHhhccccCCceeecCCCCCHHHHHHHHHHHhH
Q 014514 383 TGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 420 (423)
Q Consensus 383 ~a~~~l~~~~~~~gip~~~~~~~~~~~~av~~~~~~~~ 420 (423)
.+.+.+.+ -.+.+....++.--..|+..++++..
T Consensus 245 ~~l~~~~~----~~lttv~~~~~~~G~~av~~l~~~l~ 278 (350)
T 3h75_A 245 EALQALID----GKLSVLEAGHFTLGGWALVALHDDAL 278 (350)
T ss_dssp HHHHHHHH----TSSCEEEECGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHc----CCeeEEEcCchhhHHHHHHHHHHHHc
No 172
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=20.70 E-value=1.7e+02 Score=27.18 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=62.7
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 014514 301 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
Q Consensus 301 ~lDlgG~a~~~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~ 380 (423)
|.+=-|..+.+.+.+-++.+++ . +++++++-.+|=...-...+ -+.++++..+ ++||++-.|+++
T Consensus 9 Pf~~dg~iD~~~l~~lv~~li~-----~-v~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~--------rvpviaGvg~~~ 73 (283)
T 2pcq_A 9 PFDREGRLDEEAFRELAQALEP-----L-VDGLLVYGSNGEGVHLTPEE-RARGLRALRP--------RKPFLVGLMEET 73 (283)
T ss_dssp CBCTTCCBCHHHHHHHHHHHGG-----G-SSCCEETCTTTTGGGSCHHH-HHHHHHTCCC--------SSCCEEEECCSS
T ss_pred CCCCCCCcCHHHHHHHHHHHHh-----h-CCEEEECCcCcCchhcCHHH-HHHHHHHHHh--------CCcEEEeCCCCC
Confidence 3444588999999999999986 4 88988877544332222221 0233333222 589999999999
Q ss_pred HHHHHHHHHhhccccCC------ceeecCCCC-CHHHHHHHHHHHh
Q 014514 381 YQTGLAKMRALGEELGI------PLEVYGPEA-TMTGICKQAIDCI 419 (423)
Q Consensus 381 ~~~a~~~l~~~~~~~gi------p~~~~~~~~-~~~~av~~~~~~~ 419 (423)
..++.+..+.+ +++|. |-|++. . |.++.++.+-..+
T Consensus 74 t~~ai~la~~A-~~~Gadavlv~~P~y~~--~~~~~~l~~~f~~va 116 (283)
T 2pcq_A 74 LPQAEGALLEA-KAAGAMALLATPPRYYH--GSLGAGLLRYYEALA 116 (283)
T ss_dssp HHHHHHHHHHH-HHHTCSEEEECCCCTTG--GGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCEEEecCCcCCC--CCCHHHHHHHHHHHh
Confidence 99998877653 23452 223232 3 5577777776655
No 173
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=20.70 E-value=2.8e+02 Score=20.98 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=37.9
Q ss_pred CCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCceeecCCCCCHH
Q 014514 330 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMT 409 (423)
Q Consensus 330 ~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~~~~~~~~~~~ 409 (423)
.+.++++. +++...+..+ ...+++..++... .+..+. +.|.+ ..-+++|+..+-..-+++| +|.+
T Consensus 43 ~~~vvlDl-s~v~~iDssg--l~~L~~~~~~~~~----~g~~l~--l~~~~-~~v~~~l~~~gl~~~~~i~-----~~~~ 107 (116)
T 1th8_B 43 IRHIVLNL-GQLTFMDSSG--LGVILGRYKQIKN----VGGQMV--VCAVS-PAVKRLFDMSGLFKIIRVE-----ADEQ 107 (116)
T ss_dssp CCEEEEEE-EEEEEECHHH--HHHHHHHHHHHHH----TTCCEE--EESCC-HHHHHHHHHHTGGGTSEEE-----SSHH
T ss_pred CcEEEEEC-CCCcEEccHH--HHHHHHHHHHHHH----hCCeEE--EEeCC-HHHHHHHHHhCCceeEEEe-----CCHH
Confidence 45555555 4444444433 1555555555432 234433 44444 4566777764433346666 8999
Q ss_pred HHHHHH
Q 014514 410 GICKQA 415 (423)
Q Consensus 410 ~av~~~ 415 (423)
+|+..+
T Consensus 108 ~Al~~~ 113 (116)
T 1th8_B 108 FALQAL 113 (116)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988653
No 174
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.17 E-value=2.7e+02 Score=22.30 Aligned_cols=71 Identities=7% Similarity=0.065 Sum_probs=37.8
Q ss_pred CCCCEEEEEecCcCCchhHHhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhccccCCce------ee
Q 014514 328 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPL------EV 401 (423)
Q Consensus 328 ~~~~~vlv~~~ggi~~~~~va~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~~~~~gip~------~~ 401 (423)
+..+.+++.. ++++-.+..+ ...+++..++... .+. -+++.|.+ ..-+++|.. +|+.- .+
T Consensus 62 ~~~~~vvlDl-s~v~~iDssg--l~~L~~~~~~~~~----~g~--~l~l~~~~-~~v~~~l~~----~gl~~~~~~~~~i 127 (143)
T 3llo_A 62 ENIHTVILDF-TQVNFMDSVG--VKTLAGIVKEYGD----VGI--YVYLAGCS-AQVVNDLTS----NRFFENPALKELL 127 (143)
T ss_dssp -CCSEEEEEC-TTCCCCCHHH--HHHHHHHHHHHHT----TTC--EEEEESCC-HHHHHHHHH----TTTTSSGGGGGGE
T ss_pred CCceEEEEEC-CCCccccHHH--HHHHHHHHHHHHH----CCC--EEEEEeCC-HHHHHHHHh----CCCeeccCccceE
Confidence 3455555444 5555555444 2566666655542 233 34444555 345677776 55431 22
Q ss_pred cCCCCCHHHHHHHH
Q 014514 402 YGPEATMTGICKQA 415 (423)
Q Consensus 402 ~~~~~~~~~av~~~ 415 (423)
| .|.++|+..+
T Consensus 128 f---~s~~~Al~~~ 138 (143)
T 3llo_A 128 F---HSIHDAVLGS 138 (143)
T ss_dssp E---SSHHHHHHHT
T ss_pred E---CcHHHHHHHH
Confidence 2 7989988764
No 175
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.11 E-value=3.7e+02 Score=24.03 Aligned_cols=100 Identities=7% Similarity=-0.048 Sum_probs=50.2
Q ss_pred EEEEcCccHHHHHHHHHhccCCCCCCCceeeccCCCCH----HHHHHHHHHHHhhhccCCCCCEEEEEecCcCCchhHHh
Q 014514 273 WTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE----EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVA 348 (423)
Q Consensus 273 ~ii~NG~G~~~~~~D~l~~~g~gg~~aN~lDlgG~a~~----~~~~~a~~~ll~~~~~~~~~~~vlv~~~ggi~~~~~va 348 (423)
.+.+|--..|-++++.|... |+...+..=++|.... +|+....+.+-+ -+++.+.+. ++ .+ .+-+
T Consensus 107 ~V~~D~~~~g~~a~~~l~~~--g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~-----~g~~~~~~~--~~-~~-~~~~ 175 (297)
T 3rot_A 107 FLGSDNLLAGKKLGEKALEL--TPSAKRALVLNPQPGHIGLEKRAYGIKTILQD-----KGIFFEELD--VG-TD-PNQV 175 (297)
T ss_dssp EEECCHHHHHHHHHHHHHHH--CTTCCEEEEEESCTTCHHHHHHHHHHHHHHHH-----TTCEEEEEE--CC-SC-HHHH
T ss_pred EEccChHHHHHHHHHHHHHh--cCCCceEEEEeCCCCcHHHHHHHHHHHHHHHh-----cCCeEEEee--cC-CC-hHHH
Confidence 34455566788888888886 5456677667666542 444444444433 355433222 22 12 2222
Q ss_pred hhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhh
Q 014514 349 TTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 391 (423)
Q Consensus 349 ~~~~~ii~a~~~~~~~~~~~~~pvv~rl~G~~~~~a~~~l~~~ 391 (423)
.+.+-+.++.+. +.-.+.+..+..+..+.+.|++.
T Consensus 176 --~~~~~~~l~~~~------~~~ai~~~~d~~A~g~~~al~~~ 210 (297)
T 3rot_A 176 --QSRVKSYFKIHP------ETNIIFCLTSQALDPLGQMLLHP 210 (297)
T ss_dssp --HHHHHHHHHHCT------TCCEEEESSHHHHHHHHHHHHSH
T ss_pred --HHHHHHHHHhCC------CCCEEEEcCCcchHHHHHHHHhc
Confidence 033333344331 23355565554445566666663
Done!