RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014514
(423 letters)
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 70.7 bits (172), Expect = 1e-14
Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 21/233 (9%)
Query: 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFG 64
+ EY +K+L + L + E + + VVK + G
Sbjct: 2 NLHEYQAKQLFARY-------GLPAPVGYACTTPR--EAEEAASKIGAGPWVVKCQVHAG 52
Query: 65 KRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLSI 121
RGK+G V + + F + LG + + P+ +VE +E YL
Sbjct: 53 GRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112
Query: 122 VSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR 175
V DR + F S GG+EIE+ + + L L L LE +
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172
Query: 176 --GKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 225
+ MG+ +F + D + IE+NP + G+ LD + D A F+
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 68.5 bits (166), Expect = 8e-14
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 30/241 (12%)
Query: 5 KIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFG 64
++EY SK+L+ ++ +++ V ++ + E L++ +V+K +L G
Sbjct: 3 NLQEYQSKKLMSDN-------GVKVQRFFVADTAN--EALEAAKRLNAKEIVLKAQILAG 53
Query: 65 KRGKSGL-------VALNLDLAQVAEFVKGRLGTEVEMGGCKG---PITTFIVEPFVPHN 114
RGK V L D V + K +G + + +V + +
Sbjct: 54 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 113
Query: 115 QEYYLSIVSDRL--GCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPL 172
+E YL+I+ DR G + S GG++IEE + E+ ++ A
Sbjct: 114 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELI-FKEQIDIIEGIKDSQAQRMA 172
Query: 173 EFRGKIGDFI-------MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAF 224
E G +G ++ +F +D + +E+NPF G+ D + DD A F
Sbjct: 173 ENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEF 232
Query: 225 K 225
+
Sbjct: 233 R 233
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 62.5 bits (152), Expect = 2e-12
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 21/147 (14%)
Query: 270 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPD 329
G I MV G G ++ D V G E N+ + G +E V + +++ +D
Sbjct: 19 GNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKII----LSDDK 72
Query: 330 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 389
+ ++ +GII A+ E + + VR G N + G K+
Sbjct: 73 VKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP-----VVVRLEGNNAELGAKKLA 124
Query: 390 ALGEELGIPLEVYGPEATMTGICKQAI 416
+ G+ + +T +Q +
Sbjct: 125 ----DSGLNII---AAKGLTDAAQQVV 144
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 41.7 bits (98), Expect = 2e-05
Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 21/165 (12%)
Query: 255 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVL 314
E +A + G I V G G ++ D + G + N+ + G E +V
Sbjct: 4 ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNG--GKPANFLDLGGGVKESQVY 61
Query: 315 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV 374
Q TADP ++ + A NGI +A RE E K+ + V
Sbjct: 62 Q----AFKLLTADPKVEA---ILVNIFGGIVNCAIIANGITKACRELELKVP-----LVV 109
Query: 375 RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 419
R G N + + G+P+ + K+A+ +
Sbjct: 110 RLEGTNVHEA----QNILTNSGLPITSA---VDLEDAAKKAVASV 147
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 34.5 bits (79), Expect = 0.006
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 92 EVEMGGC--KGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVK 148
+VE+ G I V Y L+ + LG ++ SE G + +W +++
Sbjct: 55 KVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQ 113
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 32.4 bits (73), Expect = 0.046
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 34/152 (22%)
Query: 268 PKG-RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE------EVLQYARVV 320
P+G ++ M GG V+ AD + G A EE + V
Sbjct: 1 PRGNKVAIMTNAGGPGVLTADELDKRG-----LKLATLEEKTIEELRSFLPPMAAVKNPV 55
Query: 321 IDCATADPDGRKRAL--------------LIGGGIANFTDVATTFNGIIRALREKESKLK 366
A+A + R + + GIIRA++E ++
Sbjct: 56 DMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNE-- 113
Query: 367 AARMHIFVRRGGPNYQTGLAKMRALGEELGIP 398
+ + + G + K + L E+ GIP
Sbjct: 114 --KPVLAMFMAGYVSE----KAKELLEKNGIP 139
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 32.6 bits (73), Expect = 0.070
Identities = 21/181 (11%), Positives = 40/181 (22%), Gaps = 19/181 (10%)
Query: 55 LVVKPDMLFGKRG-------KSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIV 107
++VKP G +G + L + + + + G +
Sbjct: 30 VIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVP-VYPHYFY 88
Query: 108 EPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPT-----EKHMTLDA 162
+ + + I + I M +
Sbjct: 89 SKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIE 148
Query: 163 CAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF------TLVNGEPYPLDMRG 216
+ E G + DL+F E++ VNG PY
Sbjct: 149 AGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYD 208
Query: 217 E 217
Sbjct: 209 R 209
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 32.0 bits (72), Expect = 0.094
Identities = 27/188 (14%), Positives = 42/188 (22%), Gaps = 30/188 (15%)
Query: 55 LVVKPDMLFGKRG------KSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVE 108
++VK G RG DL + + G
Sbjct: 30 VIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYF 89
Query: 109 PFVPHNQEYYLSIVSDRLGCTISFSECG--------GIEIEENWDKVKTIFLPTE----- 155
+ P E L + R I I + +
Sbjct: 90 -YSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQV 148
Query: 156 KHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF------TLVNGEP 209
M A +P G ++L+ EM+ + +NG P
Sbjct: 149 FEMGDKLVAKAKELVPPGMIG----PFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGP 204
Query: 210 YPLDMRGE 217
Y GE
Sbjct: 205 YSFLYNGE 212
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 27.6 bits (60), Expect = 1.7
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 329 DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 388
D ++ L++ GG F +++ L +K S+ + + L +
Sbjct: 3 DVKRPVLMLAGGTG-----IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57
Query: 389 RA 390
+
Sbjct: 58 QQ 59
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 25.5 bits (56), Expect = 6.1
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 2 ARKKIREYDSK-RLLKEHLKRLAGLD 26
K + Y+ K + +++ R D
Sbjct: 56 TEKILETYEMKLHMYSDYVVRSEIFD 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.407
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,599,106
Number of extensions: 76887
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 16
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)