BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014516
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z6K3|PTAR1_HUMAN Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Homo sapiens GN=PTAR1 PE=2 SV=2
Length = 402
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 44/237 (18%)
Query: 121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMI 180
LLLL+ DF TAWN RK ++ + L PI +LHL L L+ PKS + W HRRWV+ +
Sbjct: 93 TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLALTKFPKSPETWIHRRWVLQQL 150
Query: 181 SR-----------NCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
+ N T+ Q +I+ E E+ + A R NY AW+HR W++ + +
Sbjct: 151 IQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAK 210
Query: 225 EQV---LDELKKSRNWSGLHVADNSCFHYRRRLM------------------LRNLEGFC 263
V LDEL +++W+ +HV+D+S FHYR+ L+ LR+
Sbjct: 211 LDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEPALV 270
Query: 264 YTQDNNSSGYFVETY----QIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHM 316
+D ++ E + +EE++++ LI Y G E LW HRR + YL H+
Sbjct: 271 PPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHI-FYLQHHL 326
>sp|A3KPW7|PTAR1_DANRE Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Danio rerio GN=ptar1 PE=2 SV=1
Length = 426
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 124/276 (44%), Gaps = 47/276 (17%)
Query: 119 SKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVIN 178
+ LLLL+ DF TAWN RK ++ L P +L+L L LS PKS + W HRRWV+
Sbjct: 91 TSTLLLLNPDFTTAWNVRKELLQCGVLNP--EKDLYLGKLALSKHPKSPETWIHRRWVLQ 148
Query: 179 MISRNCST-----------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF 221
+ + CS LQ ++ E + + A R NY AW+HR W++
Sbjct: 149 RLQKECSPSGQELKDSAESRRQCERLQRALQEEMRVCAEAAGRYPSNYNAWSHRIWVLQN 208
Query: 222 MTRE--QVL-DELKKSRNWSGLHVADNSCFHYRRRLM-------------------LRNL 259
M + +VL DEL +R W +HV+D+S FHYR+ L+ N
Sbjct: 209 MAKGNLKVLHDELSSTRLWVSMHVSDHSGFHYRQHLLKALAKELSPAAEKDVHTSQQPNG 268
Query: 260 EGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATH 319
E D+N + +++ EE+ LI+ Y G E LW HRR + + H
Sbjct: 269 ENTATASDDNHHKDVMP--RLFHEEIQLCTDLIESYPGHETLWCHRRHVFYLWHQWRREH 326
Query: 320 LLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTI 355
+ QS D+ L+ ELC +S S +
Sbjct: 327 MQGAGSQSPALTHTDV----LLSKELCDNNSISQAM 358
>sp|Q0IHB3|PTR1A_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-A OS=Xenopus laevis GN=ptar1-a PE=2 SV=1
Length = 432
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 43/227 (18%)
Query: 121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVIN-- 178
LLLL+ DF TAWN RK ++ + L P+ +L L L L+ PKS + W HRRW +
Sbjct: 93 TLLLLNPDFTTAWNVRKELIQSGTLNPV--KDLQLGKLALTKFPKSPETWIHRRWALQRL 150
Query: 179 --------------MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
+ +Q I+E E + + A R NY +W+HR W+V +
Sbjct: 151 VQELVVAAVVDKDAICPETSERIQAIVEEEMHVCCEAAGRYPSNYNSWSHRIWVVQHLGN 210
Query: 225 EQ---VLDELKKSRNWSGLHVADNSCFHYRRRL--------------------MLRNLEG 261
+ ++DEL +++W +HV+D+S FHYR+ L ++ N E
Sbjct: 211 LKATLLIDELSSTKHWVSMHVSDHSGFHYRQFLLKSLLSKTLKDFDNVGAITDLIANEEN 270
Query: 262 FCYTQDN--NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306
C +D N + + + +EE+D N L+ + G E LW HRR
Sbjct: 271 LCLPRDGEANWNQICFDLPYLLEEEMDLNRELVDSFPGHETLWCHRR 317
>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1
Length = 431
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 82/327 (25%)
Query: 27 DPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGIST---QILIPVYK 83
+P IDE+G I P AT + + + ++KLG+ + + L+P
Sbjct: 25 NPNIDEIGLI-PCPEAT---------------YNRSPIVLVENKLGVESWCIKFLLPYV- 67
Query: 84 AAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK 143
H + RQ K N +D+ + + + LLLL+ DF TAWN RK ++ +
Sbjct: 68 ---HNKLLLYRQKKLWLN-----RDELIDV-----TCTLLLLNPDFTTAWNVRKELIQSG 114
Query: 144 RLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR------------NCST----L 187
L P+ +L L L L+ PKS + W HRRWV+ + + C +
Sbjct: 115 TLNPV--KDLQLGKLALTKFPKSPETWIHRRWVLQRVVQELVVAAVVGKDATCPETYERI 172
Query: 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV---LDELKKSRNWSGLHVAD 244
Q I++ E + + A R NY +W+HR W++ + V +DEL +++W +HV+D
Sbjct: 173 QTIVQEEMHVCYEAAGRYPSNYNSWSHRIWVIQHLGNLNVKLLIDELSSTKHWVSMHVSD 232
Query: 245 NSCFHYRRRLMLRNLEGFCYTQDNNSSGYFV--------------ETYQIW--------- 281
+S FHY R+ +L++L C T ++ + V E IW
Sbjct: 233 HSGFHY-RQFLLKSL--LCKTLKDSDNVTAVPDLIANEKNPCLPREGEAIWNQICFDLPY 289
Query: 282 --KEELDWNESLIKQYVGREALWLHRR 306
+EE+ N L+ Y G E LW HRR
Sbjct: 290 LLEEEMKLNRELLDSYPGHETLWCHRR 316
>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans
GN=BET4 PE=3 SV=1
Length = 371
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKR----------LLPILMDELHLSALVLSYS 163
E +I + LL+++ +F T WN R+ I+ N IL +L+ + L
Sbjct: 48 EALIKTNELLIINPEFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKF 107
Query: 164 PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223
PK W+HRRW++ + + + W + E +V K+ + + N+ W++R ++V M
Sbjct: 108 PKCYWIWNHRRWLLFELVK-LGKVNW--KYEFGVVSKLLDLDQRNFHGWHYRRFVVKNME 164
Query: 224 RE 225
E
Sbjct: 165 LE 166
>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2
Length = 375
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ K L L +E++ + ++ PK+ Q W HRR ++ + R+ S
Sbjct: 128 TVWHFRRVLL--KSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 179
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
+E E + I + NY AW HR W++ + Q +D+L K V +NS
Sbjct: 180 --QELEFIADILTQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNS 231
Query: 247 CFHYRRRLMLRNLEGF 262
++ +R ++ N G+
Sbjct: 232 VWN-QRYFVISNTTGY 246
>sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1
Length = 379
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 21/136 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ K L L +E++ ++ PK+ Q W HRR ++ + R+ S
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
+E E + I + NY AW HR W++ + Q +D+L K V +NS
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNS 235
Query: 247 CFHYRRRLMLRNLEGF 262
++ +R ++ N G+
Sbjct: 236 VWN-QRYFVISNTTGY 250
>sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3
SV=1
Length = 322
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L L V+ +P + W +RR V+ I ++ T+++ I++E L+ + E NY+ W
Sbjct: 64 LDLLEEVIQENPSNYTIWYYRREVLKAIEQD-ETIEYDIQQEMNLLNDMGETDPKNYQIW 122
Query: 213 NHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSG 272
NHR F+ + + + K+ SG+ + D +H + + Q
Sbjct: 123 NHR----RFIVEKYIGSDNKEKEFLSGVLLEDAKNYH-----------AWSHRQ------ 161
Query: 273 YFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308
+ ++TY+ W EL + L+ ++W HR F+
Sbjct: 162 WLLKTYRDWNGELAMVDKLLSLDHRNNSVWNHRFFV 197
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 133 WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192
WN R+ IV ++ + E + VL K+ AWSHR+W++ + W
Sbjct: 122 WNHRRFIV--EKYIGSDNKEKEFLSGVLLEDAKNYHAWSHRQWLLK------TYRDW--N 171
Query: 193 RESELVEKIAERSKMNYRAWNHRCWLVS 220
E +V+K+ N WNHR +++S
Sbjct: 172 GELAMVDKLLSLDHRNNSVWNHRFFVIS 199
>sp|A5A779|PGTA_PIG Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 105 KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHLSA 157
K Q L V+ + +L + DFAT WN R+ ++ S + L ++ EL
Sbjct: 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLE 97
Query: 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCW 217
L +PKS W HR W++ + W RE EL + E + N+ W++R +
Sbjct: 98 SCLRVNPKSYGTWHHRCWLLGRLPEP----NWA--RELELCARFLEVDERNFHCWDYRRF 151
Query: 218 LVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255
+ S +EL + + + ++ S +HYR L+
Sbjct: 152 VASQAAVPPA-EELAFTDSLITRNFSNYSSWHYRSCLL 188
>sp|Q92696|PGTA_HUMAN Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens
GN=RABGGTA PE=1 SV=2
Length = 567
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 15/170 (8%)
Query: 93 LRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRL 145
L Q T F K Q L V+ + +L + DFAT WN R+ ++ S + L
Sbjct: 27 LYQSATQAVFQ-KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEEL 85
Query: 146 LPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205
++ EL L +PKS W HR W++ + W RE EL + E
Sbjct: 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEP----NWT--RELELCARFLEVD 139
Query: 206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255
+ N+ W++R V+ +EL + + + ++ S +HYR L+
Sbjct: 140 ERNFHCWDYR-RFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLL 188
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMI--SRNCSTLQWIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + ++ L +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270
W+HRCWL+ + EL+ + + + C+ YRR F TQ
Sbjct: 109 TWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRR---------FVATQAAVP 159
Query: 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308
EEL + +SLI + + W +R L
Sbjct: 160 PA----------EELAFTDSLITRNFSNYSSWHYRSCL 187
>sp|Q5NVK5|PGTA_PONAB Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 15/170 (8%)
Query: 93 LRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRL 145
L Q T F K Q L V+ + +L + DFAT WN R+ ++ S + L
Sbjct: 27 LYQSATQAVFQ-KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEEL 85
Query: 146 LPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205
++ EL L +PKS W HR W++ + W RE EL + E
Sbjct: 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEP----NWT--RELELCARFLEVD 139
Query: 206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255
+ N+ W++R V+ +EL + + + ++ S +HYR L+
Sbjct: 140 ERNFHCWDYR-RFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLL 188
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMI--SRNCSTLQWIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + ++ L +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270
W+HRCWL+ + EL+ + + + C+ YRR F TQ
Sbjct: 109 TWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRR---------FVATQAAVP 159
Query: 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308
EEL + +SLI + + W +R L
Sbjct: 160 PA----------EELAFTDSLITRNFSNYSSWHYRSCL 187
>sp|Q61239|FNTA_MOUSE Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1
Length = 377
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E++ ++ PK+ Q W HRR ++ + L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
+ I + NY AW HR W++ + Q +D+L K V +NS
Sbjct: 190 AD--------ILSQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 235
Query: 247 CFHYRRRLMLRNLEGFC 263
++ +R ++ N G+
Sbjct: 236 VWN-QRHFVISNTTGYS 251
>sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1
Length = 346
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W R++++ + L L +EL + + K+ Q W HRRW+ + + T
Sbjct: 79 TVWQFRRVVL--EALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADAVT---- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY 250
E E +KI + NY AW+HR W++ + + DEL + + +NS ++
Sbjct: 133 --NELEFTKKIFSQDAKNYHAWSHRQWVLQALGGWE--DELAYCQQLLEDDIYNNSAWNQ 188
Query: 251 RRRLMLRN 258
R ++ R+
Sbjct: 189 RYFVVTRS 196
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L L+ + +P + W RR V+ + + + E + V++IA + NY+ W
Sbjct: 64 LQLTGEAIQLNPGNYTVWQFRRVVLEALGVD-------LREELKFVDRIAGENTKNYQIW 116
Query: 213 NHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY--RRRLMLRNLEGFCYTQDNNS 270
+HR WL + + V +EL+ ++ + D +H R+ +L+ L G
Sbjct: 117 HHRRWLAEKLGADAVTNELEFTKK---IFSQDAKNYHAWSHRQWVLQALGG--------- 164
Query: 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308
W++EL + + L++ + + W R F+
Sbjct: 165 ----------WEDELAYCQQLLEDDIYNNSAWNQRYFV 192
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 149 LMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208
+ +EL + + S K+ AWSHR+WV+ + W E E +++ E N
Sbjct: 131 VTNELEFTKKIFSQDAKNYHAWSHRQWVLQALG------GW--EDELAYCQQLLEDDIYN 182
Query: 209 YRAWNHRCWLVSFMTREQVLDELKKSR 235
AWN R ++V TR +L L R
Sbjct: 183 NSAWNQRYFVV---TRSPLLGGLVAMR 206
>sp|Q04631|FNTA_RAT Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1
Length = 377
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E++ ++ PK+ Q W HRR ++ + L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
+ I + NY AW HR W++ + Q +D+L K V +NS
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 235
Query: 247 CFHYRRRLMLRNLEGFC 263
++ +R ++ N G+
Sbjct: 236 VWN-QRHFVISNTTGYS 251
>sp|Q5EA80|PGTA_BOVIN Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHLSA 157
K Q L V+ + +L + DFAT WN R+ ++ S + L ++ EL
Sbjct: 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLE 97
Query: 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
L +PKS W HR W+++ + W RE EL + E + N+ W++R
Sbjct: 98 SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEVDERNFHCWDYR 149
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINM--ISRNCSTLQWIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + ++ L +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR 252
W+HRCWL+S + EL+ + + + C+ YRR
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEVDERNFHCWDYRR 150
>sp|Q9JHK4|PGTA_MOUSE Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus
GN=Rabggta PE=1 SV=1
Length = 567
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S + L ++ EL L +PKS W HR W+++ +
Sbjct: 61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWA--RELELCARFLEADERNFHCWDYR 149
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMI--SRNCSTLQWIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + ++ L +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR 252
W+HRCWL+S + EL+ + + C+ YRR
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 150
>sp|Q55DQ4|PGTA_DICDI Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium
discoideum GN=rabggta PE=3 SV=2
Length = 311
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 103 SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHL 155
+G+ + +L++ SK +L+ + +F T WN R+L + N L I +E+
Sbjct: 43 NGRYDEISLSV-----SKLVLIENPEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKF 97
Query: 156 SALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
+ KS W HR+W I + NC W ERE +L K+ N+ W HR
Sbjct: 98 LEECIQRFTKSYWIWFHRQW-IALRMDNCD---W--EREMKLCTKLLNFDLRNFHCWGHR 151
Query: 216 CWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255
+++ + ++ DELK + + ++ S +H R ++
Sbjct: 152 RFILKH-SNIKLEDELKYTTEKVEQNFSNYSAWHQRSSIL 190
>sp|Q08602|PGTA_RAT Geranylgeranyl transferase type-2 subunit alpha OS=Rattus
norvegicus GN=Rabggta PE=1 SV=1
Length = 567
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 93 LRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRL 145
L Q T F K Q L V+ + +L + DFAT WN R+ ++ S +
Sbjct: 27 LYQSATQAVFQ-KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEES 85
Query: 146 LPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205
++ EL L +PKS W HR W+++ + W RE EL + E
Sbjct: 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEAD 139
Query: 206 KMNYRAWNHR 215
+ N+ W++R
Sbjct: 140 ERNFHCWDYR 149
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + S + +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR 252
W+HRCWL+S + EL+ + + C+ YRR
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 150
>sp|Q00618|PGTA_YEAST Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1
SV=3
Length = 327
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSN---KRLLPILMDELHLSALVLSYSPKSEQ 168
+IE + + LL + +F WN R+ I+++ + +P EL ++L PK
Sbjct: 45 SIEALKKTSELLEKNPEFNAIWNYRRDIIASLASELEIPFWDKELVFVMMLLKDYPKVYW 104
Query: 169 AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W+HR WV+ + + + E +V K+ E+ NY W++R
Sbjct: 105 IWNHRLWVLKHYPTSSPK---VWQTELAVVNKLLEQDARNYHGWHYR 148
>sp|Q9Y765|FNTA_CANAX Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Candida albicans GN=RAM2 PE=1 SV=1
Length = 306
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 133 WNSRKLIV------SNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST 186
WN R+LI+ +N P E + +LS PK+ WS+R+W+++ +
Sbjct: 106 WNYRQLIIGQIMELNNNDFDP--YREFPILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163
Query: 187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
+E V+K+ + N AW+HR +L+
Sbjct: 164 ------KELSFVDKVIDTDLKNNSAWSHRFFLL 190
>sp|Q9LX33|FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2
Length = 326
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R+L++ + L L +EL + + K+ Q W HRRWV + + +
Sbjct: 75 TVWHFRRLVL--EALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPD------V 126
Query: 191 IERESELVEKIAERSKMNYRAWNHRCW 217
RE E ++ +Y AW+HR W
Sbjct: 127 AGRELEFTRRVLSLDAKHYHAWSHRQW 153
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 31/141 (21%)
Query: 170 WSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLD 229
W RR V+ ++ + + E E +E+IAE + NY+ W+HR W+ + +
Sbjct: 77 WHFRRLVLEALNHD-------LFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAGR 129
Query: 230 ELKKSRNWSGLHVADNSCFHY--RRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDW 287
EL+ +R L D +H R+ LR L G W++ELD+
Sbjct: 130 ELEFTRRVLSL---DAKHYHAWSHRQWTLRALGG-------------------WEDELDY 167
Query: 288 NESLIKQYVGREALWLHRRFL 308
L++ V + W R ++
Sbjct: 168 CHELLEADVFNNSAWNQRYYV 188
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 133 WNSRKLIVSNKRLLP-ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191
W+ R+ + ++L P + EL + VLS K AWSHR+W + + W
Sbjct: 112 WHHRRWVA--EKLGPDVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALG------GW-- 161
Query: 192 ERESELVEKIAERSKMNYRAWNHRCWLVS 220
E E + ++ E N AWN R ++++
Sbjct: 162 EDELDYCHELLEADVFNNSAWNQRYYVIT 190
>sp|O94412|PGTA_SCHPO Geranylgeranyl transferase type-2 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=bet4 PE=3 SV=1
Length = 344
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 27/207 (13%)
Query: 131 TAWNSRKLIVSNKRLLPI--------LMDELHLSALVLSYSPKSEQAWSHRRWVINMISR 182
+ WN R+ I+ N I L +EL + PK ++HRRW +
Sbjct: 64 SVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCL----E 119
Query: 183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV 242
N W E + EK+ N+ W++R ++VS + R KK ++ +
Sbjct: 120 NAPYPNW--NYEMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAI 177
Query: 243 ADN----SCFHYRRRLM--LRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYV 296
A N S H R +L+ + NLE D NS + QI ++ELD +
Sbjct: 178 ATNFSNFSALHNRTKLIETILNLEA-----DPNSQKALAK--QILEQELDMIHQAVFTDP 230
Query: 297 GREALWLHRRFLSMYLIKHMATHLLAV 323
++W++ R+L + + T L+++
Sbjct: 231 DDSSVWIYHRWLMGHCNPNSMTPLISM 257
>sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1
Length = 333
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 31/158 (19%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L L+A + + + W RR ++ +L+ + E E VE++A + NY+ W
Sbjct: 66 LALTAEAIGLNAGNYTVWHFRRLLLE-------SLKVDLHVEREFVERVASGNSKNYQIW 118
Query: 213 NHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY--RRRLMLRNLEGFCYTQDNNS 270
+HR W+ + E EL+ ++ + D +H R+ +L+NL G
Sbjct: 119 HHRRWVAEKLGPEARNSELEFTKK---ILSVDAKHYHAWSHRQWVLQNLGG--------- 166
Query: 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308
W++EL + L+ + + + W R F+
Sbjct: 167 ----------WEDELSYCSELLAEDIFNNSAWNQRYFV 194
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 152 ELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA 211
EL + +LS K AWSHR+WV+ + W E E ++ N A
Sbjct: 136 ELEFTKKILSVDAKHYHAWSHRQWVLQNLG------GW--EDELSYCSELLAEDIFNNSA 187
Query: 212 WNHRCWLVSFMTREQVLDELKKSR 235
WN R +++ TR VL LK R
Sbjct: 188 WNQRYFVI---TRSPVLGGLKAMR 208
>sp|O60052|FNTA_SCHPO Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwp1 PE=1 SV=1
Length = 294
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV-SFMT 223
K+ Q W HR+ ++++ ERE E +K+ E NY W++R W++ +F
Sbjct: 109 KNYQVWHHRQKILSLTKN--------YERELEFTKKMFEIDSKNYHVWSYRVWILQNFND 160
Query: 224 REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257
Q ELK + + +NS +++R ++
Sbjct: 161 YSQ---ELKLTNELLEKDIYNNSAWNHRFYVLFE 191
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L+L+ ++ +P W++R ++N I+ E E +++IAE + NY+ W
Sbjct: 62 LNLTGFLIMNNPAHYTVWAYRFQILNHTPS-------YIDNELEWLDEIAEDFQKNYQVW 114
Query: 213 NHRCWLVSF 221
+HR ++S
Sbjct: 115 HHRQKILSL 123
>sp|A0RQT4|PGK_CAMFF Phosphoglycerate kinase OS=Campylobacter fetus subsp. fetus (strain
82-40) GN=pgk PE=3 SV=1
Length = 401
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 18 AQLERILDLDPLIDEVGFIHPSQFATLK---EEIGDSLSSEDRDHESTSFWIRDHKLGIS 74
+L+ + +L P +D++ F LK E IG+SL ED E+T+ + +LG+
Sbjct: 206 GKLQALTNLLPRVDKLIIGGGMAFTFLKAIGENIGNSLLEEDLIEEATNILKKGRELGV- 264
Query: 75 TQILIPVYKAAKHAF 89
+I +PV A F
Sbjct: 265 -KIYLPVDVVAAQTF 278
>sp|O72907|NTP1_FOWPN Nucleoside triphosphatase I OS=Fowlpox virus (strain NVSL) GN=NPH1
PE=3 SV=1
Length = 637
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 30/138 (21%)
Query: 263 CYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH--------RRFLSMYLIK 314
++Q N F+ I+ ++ WNE+ +KQ +GR A+ L+ RR++++Y +
Sbjct: 443 VFSQSGNEGISFLSINDIFILDMTWNEASLKQIIGR-AIRLNSHVNNPPERRYVNVYFV- 500
Query: 315 HMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLW 374
V+ S ++SVD D L+D ++ S S F + + + + W
Sbjct: 501 --------VAKLSSGRSSVD---DILLD----IIQSKS-----KEFSQLYKVFKHSSIEW 540
Query: 375 LTKQIPEYQGIDIQEKLR 392
+ ++Q +D ++ +
Sbjct: 541 IYSNYTDFQTVDDEKGFK 558
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,662,164
Number of Sequences: 539616
Number of extensions: 6140669
Number of successful extensions: 13314
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 13168
Number of HSP's gapped (non-prelim): 87
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)