Query 014516
Match_columns 423
No_of_seqs 343 out of 1103
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02789 farnesyltranstransfer 100.0 8E-48 1.7E-52 382.8 26.2 301 24-421 6-318 (320)
2 KOG0530 Protein farnesyltransf 100.0 1.2E-47 2.5E-52 359.1 19.8 280 75-423 35-316 (318)
3 KOG0529 Protein geranylgeranyl 100.0 3.2E-39 7E-44 319.5 18.4 209 76-311 22-241 (421)
4 COG5536 BET4 Protein prenyltra 100.0 6.2E-39 1.3E-43 302.3 18.1 269 108-420 44-326 (328)
5 KOG0529 Protein geranylgeranyl 100.0 7.5E-36 1.6E-40 295.6 15.0 192 150-378 46-241 (421)
6 COG5536 BET4 Protein prenyltra 100.0 2.3E-33 5.1E-38 264.6 13.6 193 148-378 47-239 (328)
7 PLN02789 farnesyltranstransfer 100.0 6.8E-31 1.5E-35 261.5 18.6 203 121-379 28-230 (320)
8 KOG0530 Protein farnesyltransf 100.0 1.4E-28 3E-33 231.0 14.0 176 148-378 58-233 (318)
9 TIGR00990 3a0801s09 mitochondr 99.0 1.1E-07 2.3E-12 103.2 25.4 161 111-304 346-506 (615)
10 PF01239 PPTA: Protein prenylt 98.9 1.6E-09 3.6E-14 70.5 3.6 30 193-222 1-30 (31)
11 TIGR00990 3a0801s09 mitochondr 98.8 2E-07 4.3E-12 101.1 20.4 168 111-311 309-479 (615)
12 PRK15359 type III secretion sy 98.8 2.5E-07 5.3E-12 81.9 15.4 126 117-258 14-139 (144)
13 PF01239 PPTA: Protein prenylt 98.8 1.1E-08 2.4E-13 66.6 4.4 30 151-180 1-30 (31)
14 PRK15359 type III secretion sy 98.5 4.1E-06 8.9E-11 74.1 14.7 124 154-310 14-137 (144)
15 PRK12370 invasion protein regu 98.5 8.5E-06 1.8E-10 87.5 19.7 168 112-309 277-451 (553)
16 PRK12370 invasion protein regu 98.5 1.3E-05 2.8E-10 86.1 20.0 161 112-305 320-481 (553)
17 PRK11189 lipoprotein NlpI; Pro 98.4 1.1E-05 2.4E-10 79.8 16.4 166 112-310 80-247 (296)
18 TIGR02552 LcrH_SycD type III s 98.4 2.3E-05 5E-10 67.3 15.6 127 118-257 5-131 (135)
19 PRK11189 lipoprotein NlpI; Pro 98.3 4.2E-05 9.2E-10 75.6 19.2 121 112-245 42-166 (296)
20 TIGR02521 type_IV_pilW type IV 98.2 0.00054 1.2E-08 62.4 21.5 162 111-305 46-209 (234)
21 KOG1126 DNA-binding cell divis 98.2 5.5E-05 1.2E-09 80.2 16.1 163 80-258 435-604 (638)
22 TIGR02917 PEP_TPR_lipo putativ 98.2 0.00076 1.6E-08 74.1 25.7 131 111-254 446-576 (899)
23 PRK15174 Vi polysaccharide exp 98.1 0.00019 4.1E-09 78.8 18.7 156 111-299 227-386 (656)
24 PRK10370 formate-dependent nit 98.1 0.00014 3E-09 67.9 15.2 126 110-246 53-179 (198)
25 TIGR02917 PEP_TPR_lipo putativ 98.1 0.00034 7.4E-09 76.8 20.8 165 113-308 142-338 (899)
26 PRK09782 bacteriophage N4 rece 98.1 0.00023 5E-09 81.1 19.4 157 111-301 557-713 (987)
27 KOG1126 DNA-binding cell divis 97.9 0.00016 3.5E-09 76.7 13.0 131 149-309 471-601 (638)
28 KOG0547 Translocase of outer m 97.9 0.0019 4.2E-08 66.8 19.9 187 117-361 347-539 (606)
29 PRK15174 Vi polysaccharide exp 97.8 0.0014 3.1E-08 71.9 20.4 131 148-304 227-357 (656)
30 PRK09782 bacteriophage N4 rece 97.8 0.00097 2.1E-08 76.2 19.3 125 110-248 590-714 (987)
31 TIGR02552 LcrH_SycD type III s 97.8 0.001 2.2E-08 57.0 14.8 126 155-310 5-130 (135)
32 PLN03088 SGT1, suppressor of 97.8 0.00045 9.7E-09 70.3 14.4 101 111-222 17-117 (356)
33 PRK11447 cellulose synthase su 97.8 0.002 4.3E-08 75.2 21.5 193 111-309 284-505 (1157)
34 PRK10370 formate-dependent nit 97.7 0.001 2.2E-08 62.1 14.6 126 147-300 53-179 (198)
35 KOG4626 O-linked N-acetylgluco 97.7 0.0011 2.5E-08 70.2 16.2 167 111-310 335-501 (966)
36 KOG4626 O-linked N-acetylgluco 97.7 0.002 4.4E-08 68.3 17.3 186 111-309 131-330 (966)
37 PRK11788 tetratricopeptide rep 97.6 0.0078 1.7E-07 60.8 20.5 158 111-301 122-285 (389)
38 KOG0548 Molecular co-chaperone 97.6 0.0017 3.7E-08 67.8 15.3 152 81-249 313-464 (539)
39 PRK11447 cellulose synthase su 97.5 0.0051 1.1E-07 71.9 20.2 194 81-305 284-535 (1157)
40 KOG0547 Translocase of outer m 97.5 0.0017 3.6E-08 67.3 13.3 201 75-307 335-545 (606)
41 PLN03088 SGT1, suppressor of 97.4 0.0032 6.8E-08 64.1 14.7 103 147-259 16-118 (356)
42 TIGR02521 type_IV_pilW type IV 97.4 0.023 5E-07 51.5 19.0 162 81-255 46-213 (234)
43 KOG0553 TPR repeat-containing 97.4 0.0012 2.7E-08 64.5 10.6 104 147-260 95-198 (304)
44 PRK11788 tetratricopeptide rep 97.4 0.02 4.3E-07 57.8 19.9 120 112-244 51-174 (389)
45 PRK15179 Vi polysaccharide bio 97.4 0.0029 6.4E-08 69.7 14.4 125 110-247 100-224 (694)
46 TIGR03302 OM_YfiO outer membra 97.4 0.061 1.3E-06 50.6 21.5 144 112-258 49-216 (235)
47 PRK15179 Vi polysaccharide bio 97.3 0.025 5.4E-07 62.5 21.2 134 112-258 68-201 (694)
48 KOG0624 dsRNA-activated protei 97.3 0.027 5.8E-07 56.4 18.1 134 113-257 55-201 (504)
49 KOG2076 RNA polymerase III tra 97.2 0.012 2.5E-07 64.9 16.8 118 112-242 155-272 (895)
50 PF13429 TPR_15: Tetratricopep 97.2 0.0087 1.9E-07 58.2 14.6 134 112-258 126-261 (280)
51 PF13414 TPR_11: TPR repeat; P 97.2 0.003 6.6E-08 47.7 8.6 68 128-206 1-69 (69)
52 KOG0553 TPR repeat-containing 97.1 0.0028 6.2E-08 62.0 9.9 104 109-223 94-197 (304)
53 PRK10049 pgaA outer membrane p 97.1 0.034 7.3E-07 62.3 19.4 165 111-308 287-470 (765)
54 PF13429 TPR_15: Tetratricopep 97.1 0.018 3.9E-07 55.9 15.0 133 148-310 125-259 (280)
55 PRK10049 pgaA outer membrane p 97.0 0.024 5.1E-07 63.5 17.2 130 112-255 31-160 (765)
56 TIGR03302 OM_YfiO outer membra 97.0 0.11 2.3E-06 48.9 19.1 169 127-309 30-213 (235)
57 PRK14574 hmsH outer membrane p 96.9 0.064 1.4E-06 60.4 18.8 160 113-309 51-213 (822)
58 PF13414 TPR_11: TPR repeat; P 96.8 0.01 2.2E-07 44.8 8.2 68 166-242 2-69 (69)
59 cd00189 TPR Tetratricopeptide 96.7 0.042 9E-07 41.3 11.8 97 133-242 3-99 (100)
60 PRK14574 hmsH outer membrane p 96.6 0.47 1E-05 53.6 23.1 160 82-258 50-216 (822)
61 KOG1155 Anaphase-promoting com 96.5 0.34 7.4E-06 50.4 19.6 135 147-311 344-478 (559)
62 cd00189 TPR Tetratricopeptide 96.2 0.069 1.5E-06 40.1 10.1 85 112-207 16-100 (100)
63 cd05804 StaR_like StaR_like; a 96.2 0.36 7.7E-06 48.1 17.8 50 191-242 130-179 (355)
64 cd05804 StaR_like StaR_like; a 96.2 0.46 9.9E-06 47.3 18.5 133 116-258 26-161 (355)
65 PRK02603 photosystem I assembl 96.1 0.086 1.9E-06 47.5 11.5 115 120-245 23-154 (172)
66 KOG0548 Molecular co-chaperone 96.0 0.038 8.3E-07 57.9 10.0 91 111-212 373-463 (539)
67 TIGR02795 tol_pal_ybgF tol-pal 96.0 0.13 2.7E-06 42.2 11.3 87 112-209 18-110 (119)
68 KOG3060 Uncharacterized conser 96.0 0.22 4.7E-06 48.2 13.8 137 109-257 99-237 (289)
69 PF13432 TPR_16: Tetratricopep 96.0 0.034 7.4E-07 41.4 7.0 53 148-208 12-64 (65)
70 KOG1125 TPR repeat-containing 95.9 0.33 7.1E-06 51.6 16.2 97 191-309 446-552 (579)
71 PRK11906 transcriptional regul 95.7 0.37 8E-06 50.3 15.6 155 124-300 242-407 (458)
72 KOG2076 RNA polymerase III tra 95.7 0.23 5E-06 55.1 14.7 101 148-258 154-254 (895)
73 PRK11906 transcriptional regul 95.7 0.21 4.5E-06 52.1 13.7 129 109-247 271-408 (458)
74 PRK15363 pathogenicity island 95.7 0.25 5.5E-06 44.4 12.4 99 63-182 15-118 (157)
75 PF13371 TPR_9: Tetratricopept 95.7 0.048 1E-06 41.4 6.9 58 110-170 9-66 (73)
76 KOG1155 Anaphase-promoting com 95.7 0.75 1.6E-05 48.0 17.1 134 112-258 346-479 (559)
77 PF13432 TPR_16: Tetratricopep 95.6 0.039 8.5E-07 41.1 6.2 53 112-167 13-65 (65)
78 PRK02603 photosystem I assembl 95.6 0.12 2.6E-06 46.6 10.2 96 111-209 50-154 (172)
79 KOG4162 Predicted calmodulin-b 95.5 0.2 4.3E-06 54.7 13.1 122 112-244 666-787 (799)
80 KOG1156 N-terminal acetyltrans 95.5 0.17 3.6E-06 54.4 12.1 100 113-223 24-123 (700)
81 COG3063 PilF Tfp pilus assembl 95.4 0.35 7.6E-06 46.1 12.9 124 112-248 51-176 (250)
82 TIGR02795 tol_pal_ybgF tol-pal 95.4 0.47 1E-05 38.7 12.5 99 135-246 7-111 (119)
83 PRK10153 DNA-binding transcrip 95.4 0.9 2E-05 48.7 17.6 154 124-300 331-488 (517)
84 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.086 1.9E-06 54.8 8.8 74 125-209 70-146 (453)
85 PF13371 TPR_9: Tetratricopept 95.1 0.13 2.7E-06 39.1 7.6 55 147-209 9-63 (73)
86 KOG1125 TPR repeat-containing 95.1 0.21 4.7E-06 52.9 11.3 104 112-226 446-559 (579)
87 KOG0624 dsRNA-activated protei 95.0 1.7 3.7E-05 43.9 16.6 166 112-308 88-266 (504)
88 COG4783 Putative Zn-dependent 94.8 1.5 3.1E-05 46.0 16.3 119 127-258 303-421 (484)
89 TIGR00540 hemY_coli hemY prote 94.7 2 4.4E-05 44.3 17.6 174 110-309 167-380 (409)
90 KOG4162 Predicted calmodulin-b 94.7 1.1 2.4E-05 49.2 15.8 138 131-299 651-788 (799)
91 KOG0495 HAT repeat protein [RN 94.7 3.5 7.6E-05 44.9 19.0 169 111-309 666-895 (913)
92 CHL00033 ycf3 photosystem I as 94.5 0.82 1.8E-05 40.8 12.5 105 130-245 35-154 (168)
93 CHL00033 ycf3 photosystem I as 94.4 0.5 1.1E-05 42.2 10.8 96 111-209 50-154 (168)
94 KOG2002 TPR-containing nuclear 94.3 7.2 0.00016 44.2 21.0 213 81-310 179-425 (1018)
95 KOG1156 N-terminal acetyltrans 94.1 0.47 1E-05 51.1 11.3 103 147-259 21-123 (700)
96 PRK15363 pathogenicity island 94.1 1.4 3.1E-05 39.6 12.8 105 124-239 28-134 (157)
97 KOG4234 TPR repeat-containing 94.0 0.47 1E-05 44.5 9.8 91 147-247 109-204 (271)
98 PF14559 TPR_19: Tetratricopep 94.0 0.23 5E-06 37.0 6.7 59 111-172 6-64 (68)
99 PRK10803 tol-pal system protei 94.0 1.4 2.9E-05 43.1 13.7 89 112-211 159-253 (263)
100 KOG2002 TPR-containing nuclear 94.0 10 0.00022 43.1 21.4 203 112-316 546-767 (1018)
101 PRK14720 transcript cleavage f 94.0 0.88 1.9E-05 51.6 13.7 131 122-258 23-163 (906)
102 COG3063 PilF Tfp pilus assembl 93.6 2.1 4.6E-05 40.9 13.5 126 147-302 49-176 (250)
103 KOG3060 Uncharacterized conser 93.6 7.8 0.00017 37.7 18.9 164 112-305 68-231 (289)
104 COG4783 Putative Zn-dependent 93.4 3.3 7.1E-05 43.5 15.7 102 112-224 322-423 (484)
105 PRK10153 DNA-binding transcrip 93.4 2.3 4.9E-05 45.7 15.2 126 110-246 356-488 (517)
106 PLN03098 LPA1 LOW PSII ACCUMUL 93.3 0.31 6.6E-06 50.8 8.1 70 162-241 70-142 (453)
107 TIGR00540 hemY_coli hemY prote 92.7 5.3 0.00012 41.2 16.5 129 118-258 247-383 (409)
108 KOG0550 Molecular chaperone (D 92.7 1.4 3.1E-05 45.3 11.6 162 110-297 183-353 (486)
109 PRK10747 putative protoheme IX 91.5 14 0.00029 38.1 17.7 161 111-300 168-363 (398)
110 KOG1127 TPR repeat-containing 91.4 3.7 8.1E-05 46.6 13.8 133 112-257 474-608 (1238)
111 PF06552 TOM20_plant: Plant sp 90.9 3.1 6.7E-05 38.3 10.7 105 191-304 7-119 (186)
112 PF14559 TPR_19: Tetratricopep 90.9 0.74 1.6E-05 34.2 5.8 57 148-212 6-62 (68)
113 PRK14720 transcript cleavage f 90.9 7.9 0.00017 44.2 16.1 174 110-301 45-259 (906)
114 PF12895 Apc3: Anaphase-promot 90.7 1.3 2.7E-05 34.7 7.2 78 111-200 4-83 (84)
115 KOG4234 TPR repeat-containing 90.1 2.6 5.7E-05 39.6 9.6 91 110-211 109-204 (271)
116 KOG1127 TPR repeat-containing 90.1 29 0.00062 39.9 19.0 134 111-256 17-165 (1238)
117 PF13431 TPR_17: Tetratricopep 89.5 0.44 9.5E-06 31.3 3.0 26 119-144 2-27 (34)
118 PF06552 TOM20_plant: Plant sp 89.3 3.3 7.1E-05 38.2 9.4 96 114-209 9-114 (186)
119 KOG1128 Uncharacterized conser 89.0 10 0.00022 41.8 14.4 114 126-258 453-566 (777)
120 KOG1173 Anaphase-promoting com 88.7 38 0.00083 36.5 19.0 212 111-359 259-523 (611)
121 PF12895 Apc3: Anaphase-promot 87.9 2.9 6.2E-05 32.7 7.4 79 147-236 3-83 (84)
122 PF00515 TPR_1: Tetratricopept 87.8 1.1 2.5E-05 28.5 4.2 33 168-208 2-34 (34)
123 PRK10803 tol-pal system protei 87.6 14 0.0003 36.1 13.4 90 148-247 158-253 (263)
124 PF13431 TPR_17: Tetratricopep 87.6 0.46 9.9E-06 31.2 2.1 27 198-224 2-28 (34)
125 PRK15331 chaperone protein Sic 87.5 10 0.00022 34.5 11.3 105 70-203 29-133 (165)
126 PF12569 NARP1: NMDA receptor- 87.2 37 0.00081 36.5 17.4 145 110-259 52-242 (517)
127 KOG1174 Anaphase-promoting com 86.8 26 0.00057 36.5 15.0 124 112-248 248-371 (564)
128 KOG0550 Molecular chaperone (D 86.8 3.8 8.3E-05 42.3 9.1 122 112-243 219-353 (486)
129 PF09295 ChAPs: ChAPs (Chs5p-A 86.5 13 0.00029 38.4 13.2 105 112-232 185-289 (395)
130 PF07719 TPR_2: Tetratricopept 86.0 2.1 4.5E-05 27.0 4.6 34 167-208 1-34 (34)
131 COG4235 Cytochrome c biogenesi 85.5 27 0.00058 34.6 14.0 127 110-246 136-262 (287)
132 PF13428 TPR_14: Tetratricopep 84.3 3.1 6.8E-05 28.5 5.2 38 132-172 3-40 (44)
133 KOG1173 Anaphase-promoting com 83.7 33 0.0007 37.0 14.4 164 112-301 328-525 (611)
134 PF00515 TPR_1: Tetratricopept 82.7 3.3 7.2E-05 26.3 4.5 33 131-166 2-34 (34)
135 KOG0495 HAT repeat protein [RN 81.1 95 0.0021 34.4 17.1 132 112-249 566-723 (913)
136 KOG0543 FKBP-type peptidyl-pro 80.3 17 0.00036 37.5 10.6 87 110-206 271-357 (397)
137 KOG2396 HAT (Half-A-TPR) repea 79.6 19 0.0004 38.3 10.8 171 76-257 88-275 (568)
138 KOG0543 FKBP-type peptidyl-pro 79.0 72 0.0016 33.0 14.7 55 147-209 271-325 (397)
139 PF07719 TPR_2: Tetratricopept 77.3 7.5 0.00016 24.3 4.8 33 131-166 2-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 76.7 18 0.0004 37.4 9.9 81 110-201 214-294 (395)
141 COG4785 NlpI Lipoprotein NlpI, 75.8 7.5 0.00016 37.2 6.1 104 135-251 70-175 (297)
142 KOG1128 Uncharacterized conser 74.9 66 0.0014 35.8 13.7 117 111-240 500-616 (777)
143 PF13428 TPR_14: Tetratricopep 73.3 7.1 0.00015 26.7 4.2 39 168-214 2-40 (44)
144 PF13525 YfiO: Outer membrane 71.0 53 0.0012 30.3 10.8 103 112-217 21-132 (203)
145 KOG0376 Serine-threonine phosp 68.1 12 0.00026 39.3 6.2 91 147-247 18-108 (476)
146 PF12569 NARP1: NMDA receptor- 67.4 1.8E+02 0.004 31.3 16.3 135 113-258 211-358 (517)
147 KOG4555 TPR repeat-containing 66.9 93 0.002 27.6 11.7 69 111-182 58-130 (175)
148 PF13424 TPR_12: Tetratricopep 65.8 13 0.00027 28.2 4.6 68 127-205 2-76 (78)
149 KOG0376 Serine-threonine phosp 65.5 14 0.00031 38.8 6.1 68 189-258 18-85 (476)
150 KOG1174 Anaphase-promoting com 63.7 2E+02 0.0043 30.3 15.7 169 111-305 315-511 (564)
151 PF08424 NRDE-2: NRDE-2, neces 63.6 1.6E+02 0.0036 29.3 13.6 97 118-222 7-113 (321)
152 PF13181 TPR_8: Tetratricopept 63.2 16 0.00034 22.9 4.0 33 168-208 2-34 (34)
153 PF08424 NRDE-2: NRDE-2, neces 61.5 1E+02 0.0022 30.7 11.4 59 112-173 47-105 (321)
154 PRK10941 hypothetical protein; 61.2 76 0.0016 31.1 10.1 58 110-170 195-252 (269)
155 PRK10747 putative protoheme IX 57.3 2.3E+02 0.005 29.0 19.0 86 111-207 133-219 (398)
156 COG4235 Cytochrome c biogenesi 55.5 2.2E+02 0.0048 28.2 14.5 134 148-313 137-271 (287)
157 PF13181 TPR_8: Tetratricopept 52.5 32 0.00069 21.4 4.1 32 131-165 2-33 (34)
158 KOG2396 HAT (Half-A-TPR) repea 50.5 1.4E+02 0.0029 32.1 10.2 94 109-213 84-178 (568)
159 COG5010 TadD Flp pilus assembl 49.1 2.6E+02 0.0057 27.2 17.3 164 113-310 50-213 (257)
160 COG5191 Uncharacterized conser 48.6 65 0.0014 32.5 7.2 95 124-240 101-196 (435)
161 KOG4555 TPR repeat-containing 47.3 70 0.0015 28.4 6.4 69 147-223 57-129 (175)
162 PF13226 DUF4034: Domain of un 47.0 1.2E+02 0.0026 29.9 8.9 81 151-231 61-155 (277)
163 KOG1310 WD40 repeat protein [G 43.2 1.4E+02 0.0031 32.3 9.1 115 164-300 365-480 (758)
164 COG5010 TadD Flp pilus assembl 42.6 3.3E+02 0.0072 26.6 14.2 133 113-258 83-215 (257)
165 PF04184 ST7: ST7 protein; In 41.9 4.8E+02 0.01 28.1 12.8 62 227-310 275-340 (539)
166 PF13174 TPR_6: Tetratricopept 40.5 54 0.0012 19.9 3.7 28 136-166 6-33 (33)
167 PRK10941 hypothetical protein; 40.3 1E+02 0.0022 30.2 7.3 60 190-251 196-255 (269)
168 KOG1308 Hsp70-interacting prot 39.9 45 0.00098 33.9 4.7 109 75-205 104-212 (377)
169 KOG1308 Hsp70-interacting prot 38.0 23 0.0005 35.9 2.3 97 135-242 117-213 (377)
170 PF12688 TPR_5: Tetratrico pep 35.1 2.8E+02 0.0061 23.5 10.7 68 112-182 17-90 (120)
171 PRK15331 chaperone protein Sic 35.1 3.5E+02 0.0076 24.6 10.7 82 148-239 52-133 (165)
172 COG4785 NlpI Lipoprotein NlpI, 35.0 4.3E+02 0.0093 25.6 11.7 102 118-223 87-214 (297)
173 KOG3824 Huntingtin interacting 33.7 1.4E+02 0.003 30.2 6.9 80 82-175 113-192 (472)
174 KOG2376 Signal recognition par 33.6 6.6E+02 0.014 27.7 12.2 118 109-246 25-145 (652)
175 KOG2376 Signal recognition par 33.4 4.3E+02 0.0094 29.0 10.9 22 149-170 28-49 (652)
176 PF13424 TPR_12: Tetratricopep 33.3 52 0.0011 24.7 3.3 68 163-240 1-75 (78)
177 KOG4642 Chaperone-dependent E3 33.1 2.4E+02 0.0053 27.5 8.2 58 109-169 23-80 (284)
178 PF04733 Coatomer_E: Coatomer 32.3 3.2E+02 0.007 26.9 9.4 70 147-224 181-250 (290)
179 KOG4648 Uncharacterized conser 29.5 1.5E+02 0.0033 30.4 6.4 89 110-209 111-199 (536)
180 COG2956 Predicted N-acetylgluc 28.7 6.4E+02 0.014 25.8 10.6 97 78-206 147-245 (389)
181 KOG4642 Chaperone-dependent E3 28.0 2.7E+02 0.0059 27.2 7.6 31 149-179 26-56 (284)
182 COG0457 NrfG FOG: TPR repeat [ 27.8 3.6E+02 0.0077 22.4 17.5 153 112-297 111-268 (291)
183 smart00028 TPR Tetratricopepti 27.7 1.2E+02 0.0025 16.8 4.3 32 168-207 2-33 (34)
184 PF14561 TPR_20: Tetratricopep 27.6 3.2E+02 0.007 21.9 8.2 50 114-166 6-55 (90)
185 KOG4648 Uncharacterized conser 27.4 2.3E+02 0.005 29.2 7.3 90 147-246 111-200 (536)
186 PF13512 TPR_18: Tetratricopep 26.5 4.5E+02 0.0098 23.2 12.5 99 112-211 26-135 (142)
187 PF13132 DUF3950: Domain of un 25.5 71 0.0015 20.5 2.1 10 240-249 12-21 (30)
188 KOG1129 TPR repeat-containing 24.8 2.6E+02 0.0056 28.6 7.1 81 76-169 231-326 (478)
189 PF12688 TPR_5: Tetratrico pep 24.5 4.4E+02 0.0095 22.4 12.2 105 132-254 3-113 (120)
190 PF14853 Fis1_TPR_C: Fis1 C-te 22.9 1.8E+02 0.004 21.0 4.3 29 112-140 17-45 (53)
191 cd07984 LPLAT_LABLAT-like Lyso 22.8 68 0.0015 28.7 2.5 25 192-217 167-191 (192)
192 PRK08706 lipid A biosynthesis 21.9 56 0.0012 32.0 1.9 21 154-175 258-278 (289)
193 smart00386 HAT HAT (Half-A-TPR 21.3 1.5E+02 0.0033 17.4 3.3 25 149-173 3-27 (33)
194 PRK13683 hypothetical protein; 20.0 84 0.0018 25.3 2.2 26 8-33 20-46 (87)
No 1
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=8e-48 Score=382.77 Aligned_cols=301 Identities=21% Similarity=0.252 Sum_probs=238.1
Q ss_pred hccCCCCCcccccCCcccccchhhhcccCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014516 24 LDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS 103 (423)
Q Consensus 24 l~~dp~idEv~~i~~s~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~ 103 (423)
+..+|.|++|.+||. ..+ .=+|....+.+.|..|...|++.++
T Consensus 6 ~~~~~~~~d~~p~~~--------~~~--------------------~~~~~~i~y~~~~~~a~~~~ra~l~--------- 48 (320)
T PLN02789 6 LSQRPEWADVTPIPQ--------DDG--------------------PNPVVPIAYTPEFREAMDYFRAVYA--------- 48 (320)
T ss_pred cccCCCcCCccccCC--------CCC--------------------CCcccceeeCHHHHHHHHHHHHHHH---------
Confidence 467899999999882 111 0145556667999999999999887
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc
Q 014516 104 GKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRN 183 (423)
Q Consensus 104 ~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~ 183 (423)
..+.++++|.+|+++|.+||+|||||++|+.+|..++ ..+++||.+++.++..|||+|++|+||+|++.+++..
T Consensus 49 ----~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 ----SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred ----cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 4577899999999999999999999999999999885 4689999999999999999999999999999988642
Q ss_pred cChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccc
Q 014516 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFC 263 (423)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~ 263 (423)
...+|+.+++++++.||||||||+||+|++.+++. +++||++++++|+.||+|+|||+||.+++.++...
T Consensus 123 ------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l-- 192 (320)
T PLN02789 123 ------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL-- 192 (320)
T ss_pred ------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc--
Confidence 25789999999999999999999999999999976 89999999999999999999999999999876211
Q ss_pred ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHH
Q 014516 264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDH 343 (423)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~ 343 (423)
.+ ...+.++|++|+.++|..+|+|+|+|+|+++++..... ++.. ..+..+|..
T Consensus 193 -------~~----~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-------~l~~--------~~~~~~~~~- 245 (320)
T PLN02789 193 -------GG----LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-------ALVS--------DPEVSSVCL- 245 (320)
T ss_pred -------cc----ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-------cccc--------chhHHHHHH-
Confidence 00 01256789999999999999999999999999853100 0000 001223322
Q ss_pred HHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhh---h---------hhcchhhHHHHhhhcCcCccc
Q 014516 344 ELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQE---K---------LRAGVGDVTRMLKRSCPDRSS 411 (423)
Q Consensus 344 El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~---~---------~~~~~~~~~~~l~~~~p~r~~ 411 (423)
+++.+.| .+.+++.||+|.+.++.. +.++ . ....+.+|.++|.++||||+|
T Consensus 246 ------~~~~~~~----------~s~~al~~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~ 308 (320)
T PLN02789 246 ------EVLSKDS----------NHVFALSDLLDLLCEGLQ-PTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRN 308 (320)
T ss_pred ------HhhcccC----------CcHHHHHHHHHHHHhhhc-cchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHH
Confidence 2222233 357889999999986521 1110 0 112689999999999999999
Q ss_pred hhhhhhccCC
Q 014516 412 LWDYLVGYHS 421 (423)
Q Consensus 412 ~w~~~~~~~~ 421 (423)
||+||++.+.
T Consensus 309 yw~~~~~~~~ 318 (320)
T PLN02789 309 YWAWRKSKLP 318 (320)
T ss_pred HHHHHHHhhc
Confidence 9999998874
No 2
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-47 Score=359.07 Aligned_cols=280 Identities=19% Similarity=0.247 Sum_probs=216.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHH
Q 014516 75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELH 154 (423)
Q Consensus 75 ~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~ 154 (423)
+.++..-|+.+...|++.+. .++.|+++|++|+.+|.+||.|||+|+||+.+|.+++ .++.+||+
T Consensus 35 ~I~Yte~fr~~m~YfRAI~~-------------~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~--~dL~~El~ 99 (318)
T KOG0530|consen 35 KIAYTEDFRDVMDYFRAIIA-------------KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM--SDLNKELE 99 (318)
T ss_pred EeeechhHHHHHHHHHHHHh-------------ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH--HHHHHHHH
Confidence 44567789999999988776 4688999999999999999999999999999999996 78999999
Q ss_pred HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS 234 (423)
Q Consensus 155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (423)
+++.++.-|||||++|+|||++++.++.. -.+||+||..++..|.||||||+||.|+++.++. ++.||.++
T Consensus 100 ~l~eI~e~npKNYQvWHHRr~ive~l~d~-------s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~--~~~EL~y~ 170 (318)
T KOG0530|consen 100 YLDEIIEDNPKNYQVWHHRRVIVELLGDP-------SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD--YEDELAYA 170 (318)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHhcCc-------ccchHHHHHHHHhccccchhhhHHHHHHHHHHhh--HHHHHHHH
Confidence 99999999999999999999999998852 1399999999999999999999999999999976 99999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 014516 235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIK 314 (423)
Q Consensus 235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~ 314 (423)
..+|+.|.+|+|||+||.|++....+. .....++.|+.|+.++|...|.|+|+|.|.++++..
T Consensus 171 ~~Lle~Di~NNSAWN~Ryfvi~~~~~~--------------~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~--- 233 (318)
T KOG0530|consen 171 DELLEEDIRNNSAWNQRYFVITNTKGV--------------ISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL--- 233 (318)
T ss_pred HHHHHHhhhccchhheeeEEEEeccCC--------------ccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh---
Confidence 999999999999999999998764211 113578999999999999999999999999999853
Q ss_pred HHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHH-HHhhhhccccchhhhhhhhc
Q 014516 315 HMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYML-WLTKQIPEYQGIDIQEKLRA 393 (423)
Q Consensus 315 ~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~-Wl~~~~~~~~~~~~~~~~~~ 393 (423)
+.+.+. ..+...|+.. ....-|..+=+ .=+.+..+|.. =|.-+. + .++ +..
T Consensus 234 -----d~gl~s--------~s~vv~f~~~-------l~~~~~~~sP~-lla~l~d~~~e~~l~~~~----~--~~~-~a~ 285 (318)
T KOG0530|consen 234 -----DSGLSS--------DSKVVSFVEN-------LYLQLPKRSPF-LLAFLLDLYAEDALAYKS----S--AEE-LAR 285 (318)
T ss_pred -----ccCCcC--------CchHHHHHHH-------HhhccCCCChh-HHHHHHHHHHHHHhhccc----c--chH-HHH
Confidence 111221 1224444432 11101111000 01122223311 111111 1 122 333
Q ss_pred chhhHHHHhh-hcCcCccchhhhhhccCCCC
Q 014516 394 GVGDVTRMLK-RSCPDRSSLWDYLVGYHSEP 423 (423)
Q Consensus 394 ~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~~ 423 (423)
.|+++-+.|. ++||+|+|||.|++++++.+
T Consensus 286 ~a~~ly~~La~~~DpiR~nyW~~~~s~ls~~ 316 (318)
T KOG0530|consen 286 KAVKLYEDLAIKVDPIRKNYWRHKQSQLSTA 316 (318)
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhhcccc
Confidence 5788888895 99999999999999888653
No 3
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-39 Score=319.48 Aligned_cols=209 Identities=23% Similarity=0.325 Sum_probs=180.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC---------Cc
Q 014516 76 QILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR---------LL 146 (423)
Q Consensus 76 ~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~---------~~ 146 (423)
......|+.+.++|.++.. .++++.+++.+|..+|..||++||+||||+.++.... ..
T Consensus 22 ~~k~~~~~~~~s~i~~~r~-------------~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~ 88 (421)
T KOG0529|consen 22 AFKAGQLRSLFSIIQKKRE-------------AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQ 88 (421)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHH
Confidence 3456678888888877654 5689999999999999999999999999999987643 12
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh-
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE- 225 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~- 225 (423)
..+.+||.++..+|..|||+|.+||||+|+|++...+ .|..||.+|+++++.||||||||+|||||+.+...+
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~ 162 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSR 162 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccc
Confidence 3688999999999999999999999999999987653 389999999999999999999999999999987542
Q ss_pred -hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 226 -QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 226 -~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
...+|+++|+++|..|+|||||||||..+|..+.... .+|. .-....+..|++++.++|.++|+|+|+|+|
T Consensus 163 ~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-------~~g~-~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 163 NLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-------ADGN-FMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred ccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc-------ccCc-cCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 4789999999999999999999999999999886531 1121 112467899999999999999999999999
Q ss_pred HHHHHHH
Q 014516 305 RRFLSMY 311 (423)
Q Consensus 305 rr~Ll~~ 311 (423)
+++|+.+
T Consensus 235 ~rWLl~~ 241 (421)
T KOG0529|consen 235 HRWLLGR 241 (421)
T ss_pred hHHhhcc
Confidence 9999876
No 4
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-39 Score=302.30 Aligned_cols=269 Identities=17% Similarity=0.236 Sum_probs=199.8
Q ss_pred CccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-----CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh
Q 014516 108 DDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-----LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR 182 (423)
Q Consensus 108 ~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-----~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~ 182 (423)
..+++.++|+.|..++..||++||+||||+.++.+.. ....+..||.|++.++.-|||+|++||||+|+|+....
T Consensus 44 kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~ 123 (328)
T COG5536 44 KKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPK 123 (328)
T ss_pred hhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC
Confidence 4689999999999999999999999999999998821 13458899999999999999999999999999998755
Q ss_pred ccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC----hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT----REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~----~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
+ -|..|+.++.++++.||||||+|+||+|++.+.. ......|++++...|..|+.|+||||||..++.++
T Consensus 124 ~------~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~ 197 (328)
T COG5536 124 P------SWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERR 197 (328)
T ss_pred c------ccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence 3 2899999999999999999999999999995532 24588999999999999999999999998888877
Q ss_pred hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH-HHHHHhhhhhhcccCCCCCCcchhhH
Q 014516 259 LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY-LIKHMATHLLAVSCQSKPKASVDIDI 337 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~-l~~~~~~~~~~~s~~~~~~~~~~~~~ 337 (423)
...+ .. -....+++||+++.++|..+|.|+|+|.|.|+++.. ..... +..+.
T Consensus 198 ~~~~-----~v------isqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~----------------~~~e~ 250 (328)
T COG5536 198 FNRG-----DV------ISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIV----------------MIGEK 250 (328)
T ss_pred Hhhc-----cc------chHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHH----------------HHHHH
Confidence 5431 00 011258999999999999999999999999999865 11111 11223
Q ss_pred HHHHHHHHHHHH--hhhccCccchhhhHHH--HHHHHHHHHHhhhhccccchhhhhhhhcchhhHHHHhhhcCcCccchh
Q 014516 338 DSLMDHELCLVH--SCSTTIADANFEEAQA--IHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLW 413 (423)
Q Consensus 338 ~~~l~~El~lv~--~~~~~dp~D~~~~~q~--~~~~~y~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~r~~~w 413 (423)
...|..++.+++ ++-...|+| +.--.+ ..-.+++.|..+- .+ .+.++ . .+..++-++||.|+|+|
T Consensus 251 v~~L~k~~~iin~~el~l~~ken-~~~l~~~l~lE~l~~~~~~~~--te--~d~e~----~--alv~~~i~~DP~Rr~~y 319 (328)
T COG5536 251 VEDLGKYIVIINGKELDLGPKEN-LPCLHSLLELEFLCHAEKALL--TE--RDIEQ----K--ALVELAIKVDPARRNLY 319 (328)
T ss_pred HHHHHhhheeccccccccCCccc-cHHHHHHHHHHHHHHHhhcCc--ch--hHHHH----H--HHHHHHHhcChHHHHHH
Confidence 455666666655 555555666 111011 1111222332221 12 11122 1 13445579999999999
Q ss_pred hhhhccC
Q 014516 414 DYLVGYH 420 (423)
Q Consensus 414 ~~~~~~~ 420 (423)
..+.+.+
T Consensus 320 ~~l~~r~ 326 (328)
T COG5536 320 STLHERF 326 (328)
T ss_pred HHHHhhc
Confidence 9887643
No 5
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-36 Score=295.59 Aligned_cols=192 Identities=24% Similarity=0.332 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc--c--ChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516 150 MDELHLSALVLSYSPKSEQAWSHRRWVINMISRN--C--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225 (423)
Q Consensus 150 ~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~--~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~ 225 (423)
.+.+.++..+|.+||..|++|||||-++...... . ...+.++.+||.+++.+++.+||.|.+|+||+|++++-+.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 5669999999999999999999999999876542 1 12455789999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
.|..||+.|+++++.|++||||||||+||+...... .....+|++|++++|..+|+|+|+||||
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~----------------~~~~~~El~ftt~~I~~nfSNYsaWhyR 189 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS----------------RNLEKEELEFTTKLINDNFSNYSAWHYR 189 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc----------------cccchhHHHHHHHHHhccchhhhHHHHH
Confidence 899999999999999999999999999999986321 1146789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhh
Q 014516 306 RFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQ 378 (423)
Q Consensus 306 r~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~ 378 (423)
..++..+...-. ++ ..+ ....|..|+++|++|+||||+| || +|+|++||+++
T Consensus 190 s~lL~~l~~~~~-~g----------~~~---~~~~l~sEle~v~saiFTdp~D-----qS--~WfY~rWLl~~ 241 (421)
T KOG0529|consen 190 SLLLSTLHPKEA-DG----------NFM---PKELLQSELEMVHSAIFTDPED-----QS--CWFYHRWLLGR 241 (421)
T ss_pred HHHHHHhccccc-cC----------ccC---CHHHHHHHHHHHHHHHhcCccc-----cc--eeeehHHhhcc
Confidence 999876432211 00 001 2577999999999999999999 65 99999999988
No 6
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=264.62 Aligned_cols=193 Identities=17% Similarity=0.310 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (423)
-...+|++|+.++..||..|++||||+-++.+......+...++.+||.+|+.+++-+||||+.|+||+|++...+.+.|
T Consensus 47 ys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~ 126 (328)
T COG5536 47 YSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSW 126 (328)
T ss_pred cCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCccc
Confidence 35789999999999999999999999999998433323345679999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 014516 228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRF 307 (423)
Q Consensus 228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~ 307 (423)
..|+..++++++.|++||||||||++++..+... . -.+.+..|++|++++|++||.|.|||+||-.
T Consensus 127 ~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~--~------------N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 127 GRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDL--F------------NFSDLKHELEYTTSLIETDIYNNSAWHHRYI 192 (328)
T ss_pred chhHHHHHHHhcccccccceeeeEeeeeecchhh--c------------cchhHHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence 9999999999999999999999999999774321 1 1236889999999999999999999999977
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhh
Q 014516 308 LSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQ 378 (423)
Q Consensus 308 Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~ 378 (423)
++..+.+. ++. . .+.++.+||+++.++++|||+| |+ +|.|++|+.+.
T Consensus 193 ~~~~~~~~-----~~v----------i--sqk~l~~eL~~i~~~if~~p~~-----~S--~w~y~r~~~~~ 239 (328)
T COG5536 193 WIERRFNR-----GDV----------I--SQKYLEKELEYIFDKIFTDPDN-----QS--VWGYLRGVSSE 239 (328)
T ss_pred HHHHHHhh-----ccc----------c--hHHHHHHHHHHHHhhhhcCccc-----cc--hhhHHHHHhcc
Confidence 77664431 111 1 2348999999999999999999 55 99999999976
No 7
>PLN02789 farnesyltranstransferase
Probab=99.97 E-value=6.8e-31 Score=261.46 Aligned_cols=203 Identities=20% Similarity=0.330 Sum_probs=178.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516 121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (423)
Q Consensus 121 ~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (423)
+.|...|++..||.+.+.++...+ ..+++|.+++.+|..||++|++|+||++++..++. .+++||.++++
T Consensus 28 ~~i~y~~~~~~a~~~~ra~l~~~e---~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-------~l~eeL~~~~~ 97 (320)
T PLN02789 28 VPIAYTPEFREAMDYFRAVYASDE---RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-------DLEEELDFAED 97 (320)
T ss_pred cceeeCHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-------hHHHHHHHHHH
Confidence 346778999999999999998875 67999999999999999999999999999998853 27899999999
Q ss_pred HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHH
Q 014516 201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQI 280 (423)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (423)
+++.+||||++|+||+|++..++.....+|+++++++++.||+|+|||+||++++.++. .
T Consensus 98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~--------------------~ 157 (320)
T PLN02789 98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG--------------------G 157 (320)
T ss_pred HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh--------------------h
Confidence 99999999999999999999987645678999999999999999999999999999862 3
Q ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchh
Q 014516 281 WKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANF 360 (423)
Q Consensus 281 ~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~ 360 (423)
+++|+++++++|+.+|+|.|+|+||.+++..+.. . ++ ....+++|++++..++.++|++
T Consensus 158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~-l----~~--------------~~~~~e~el~y~~~aI~~~P~N-- 216 (320)
T PLN02789 158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL-L----GG--------------LEAMRDSELKYTIDAILANPRN-- 216 (320)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc-c----cc--------------ccccHHHHHHHHHHHHHhCCCC--
Confidence 8899999999999999999999999998764211 0 00 1235778999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 014516 361 EEAQAIHSAAYMLWLTKQI 379 (423)
Q Consensus 361 ~~~q~~~~~~y~~Wl~~~~ 379 (423)
.++|.|+.|+....
T Consensus 217 -----~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 217 -----ESPWRYLRGLFKDD 230 (320)
T ss_pred -----cCHHHHHHHHHhcC
Confidence 45999999999763
No 8
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-28 Score=231.04 Aligned_cols=176 Identities=17% Similarity=0.297 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (423)
.-.++|++|+.++..||-+||+|+|||-||.++.. .+.+||+.+..+++.+||||..|+||+|++..++.+..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 45899999999999999999999999999999876 38999999999999999999999999999999885323
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 014516 228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRF 307 (423)
Q Consensus 228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~ 307 (423)
+||+++..+|..|..|||||.||+|++..+. .++.||.|+..+|+.+-.|.|||+||-+
T Consensus 131 -rELef~~~~l~~DaKNYHaWshRqW~~r~F~--------------------~~~~EL~y~~~Lle~Di~NNSAWN~Ryf 189 (318)
T KOG0530|consen 131 -RELEFTKLMLDDDAKNYHAWSHRQWVLRFFK--------------------DYEDELAYADELLEEDIRNNSAWNQRYF 189 (318)
T ss_pred -chHHHHHHHHhccccchhhhHHHHHHHHHHh--------------------hHHHHHHHHHHHHHHhhhccchhheeeE
Confidence 9999999999999999999999999998751 4899999999999999999999999998
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhh
Q 014516 308 LSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQ 378 (423)
Q Consensus 308 Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~ 378 (423)
++... . ++ . .+..|+.|+.+..+.+.+.|+. + ++|.|+.=+.+.
T Consensus 190 vi~~~-------~-~~----------~--~~~~le~El~yt~~~I~~vP~N-----e--SaWnYL~G~l~~ 233 (318)
T KOG0530|consen 190 VITNT-------K-GV----------I--SKAELERELNYTKDKILLVPNN-----E--SAWNYLKGLLEL 233 (318)
T ss_pred EEEec-------c-CC----------c--cHHHHHHHHHHHHHHHHhCCCC-----c--cHHHHHHHHHHh
Confidence 87431 1 11 1 2367899999999999999999 4 599999877765
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.00 E-value=1.1e-07 Score=103.23 Aligned_cols=161 Identities=8% Similarity=0.019 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..+|.++|++..+|..+..++...+ .+++.+..+..++..+|+++.+|.+|..+...++.
T Consensus 346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------- 414 (615)
T TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELG---DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE-------- 414 (615)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence 3567777777777778877777777777776664 67777777777777788877788777777666554
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+++.+..+.++++.+|.|..+|...+.+...++. +++.+..+.+.+..+|.+..+|.++..++....
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g----------- 481 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQN----------- 481 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-----------
Confidence 5677777777888888777777777777766654 677777777777777777777777776665531
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
.+++.+++..+++..+|.+...|..
T Consensus 482 ---------~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 482 ---------KFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred ---------CHHHHHHHHHHHHhcCCcccccccc
Confidence 2567777777778777776555543
No 10
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.89 E-value=1.6e-09 Score=70.54 Aligned_cols=30 Identities=40% Similarity=0.738 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFM 222 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~ 222 (423)
+||++|..++..+|+||+||+||+||++++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 588999999999999999999999998765
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.85 E-value=2e-07 Score=101.10 Aligned_cols=168 Identities=13% Similarity=-0.030 Sum_probs=147.9
Q ss_pred chHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516 111 LAIEVMIHSKALLLL---SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~---nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~ 187 (423)
..+++++.+..++.. +|+...+|+.++.+....+ .+++++..+..++..+|.+..+|..+.+++..++.
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g---~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~----- 380 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG---KHLEALADLSKSIELDPRVTQSYIKRASMNLELGD----- 380 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-----
Confidence 456788889999876 4888999999999988775 78999999999999999999999999999887765
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
+++.+..+.++++.+|.+..+|.+++.+....+. +++.+..+++.+..+|.|..+|..+..++.++.
T Consensus 381 ---~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g-------- 447 (615)
T TIGR00990 381 ---PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG-------- 447 (615)
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC--------
Confidence 6889999999999999999999999999887765 889999999999999999999998888776642
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY 311 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~ 311 (423)
.+++.+....+++..+|.+..+|.++..++..
T Consensus 448 ------------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 448 ------------SIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred ------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 26788999999999999999999998776643
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=2.5e-07 Score=81.92 Aligned_cols=126 Identities=10% Similarity=-0.108 Sum_probs=112.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHH
Q 014516 117 IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESE 196 (423)
Q Consensus 117 ~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~ 196 (423)
.+.+.++.++|++ +..+...+...+ .+.+++..+..++..+|.++.+|..+.-++..++. +++.+.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~ 79 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEG---DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--------YTTAIN 79 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------HHHHHH
Confidence 3568889999997 445777777765 78999999999999999999999999999998876 789999
Q ss_pred HHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 197 LVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
++.++++.+|.+..+|.+++.++..++. ..+.+..+.+.+..+|.|.-.|..|..+...+
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 78999999999999999999999998876653
No 13
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.76 E-value=1.1e-08 Score=66.61 Aligned_cols=30 Identities=37% Similarity=0.796 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCchhHhHHHHHHHHHh
Q 014516 151 DELHLSALVLSYSPKSEQAWSHRRWVINMI 180 (423)
Q Consensus 151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l 180 (423)
+||.++..+|..+||+|++|+||+|+++++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 599999999999999999999999999876
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=4.1e-06 Score=74.07 Aligned_cols=124 Identities=8% Similarity=-0.113 Sum_probs=107.7
Q ss_pred HHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHH
Q 014516 154 HLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKK 233 (423)
Q Consensus 154 ~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~ 233 (423)
.+++.++..+|.+ |.++.+++.+.+. +.+.+..+..++..+|.++.+|..++-++...+. +.+.+..
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~ 80 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGD--------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--YTTAINF 80 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHH
Confidence 4568889999986 5577888776665 6889999999999999999999999999988765 8999999
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 234 SRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 234 ~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
+.+.+..+|.|..+|.++..++..+. -+++.+.....+|..+|.|...|..+.....
T Consensus 81 y~~Al~l~p~~~~a~~~lg~~l~~~g--------------------~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 81 YGHALMLDASHPEPVYQTGVCLKMMG--------------------EPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999999888752 2678899999999999999999988776543
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=98.49 E-value=8.5e-06 Score=87.52 Aligned_cols=168 Identities=8% Similarity=-0.036 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS 185 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~ 185 (423)
.++++.++.+++.++|++..+|.....+..... ....+.+++.....++..+|++..+|..+..++...+.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~--- 353 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE--- 353 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC---
Confidence 468899999999999999999987776543221 12347899999999999999999999998887776554
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccccc
Q 014516 186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYT 265 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~ 265 (423)
+++.+..++++++.+|.+..+|.+.+.++...+. +++.+..+++.+..+|.+..++.++..++... +
T Consensus 354 -----~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~-g----- 420 (553)
T PRK12370 354 -----YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--LEEALQTINECLKLDPTRAAAGITKLWITYYH-T----- 420 (553)
T ss_pred -----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-c-----
Confidence 6889999999999999999999999999988776 88999999999999999876655544433321 1
Q ss_pred CCCCCCCchhchHHHHHHHHHHHHHHHhhc-CCCccHHHHHHHHH
Q 014516 266 QDNNSSGYFVETYQIWKEELDWNESLIKQY-VGREALWLHRRFLS 309 (423)
Q Consensus 266 ~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~-p~neSaW~yrr~Ll 309 (423)
-+++.+....+++..+ |++..++.+...++
T Consensus 421 --------------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 421 --------------GIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred --------------CHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 2577788888888776 66666666654443
No 16
>PRK12370 invasion protein regulator; Provisional
Probab=98.45 E-value=1.3e-05 Score=86.10 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++....+++.++|++..+|..+..++...+ ..++++..+..++..+|.++.+|.+...++...+. +
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--------~ 388 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS---EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--------L 388 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 578999999999999999999999999887765 78999999999999999999999999999888765 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH-VADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d-~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
++.+..++++++.+|.+..++.+..++.-..+. +++.+..+.+.+..+ |.+-.++.+...++....
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G----------- 455 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG----------- 455 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC-----------
Confidence 889999999999999987776666666555443 688899999999886 556566777776665431
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
-+++..+...++....|.+..++...
T Consensus 456 ---------~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 456 ---------KHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred ---------CHHHHHHHHHHhhhccchhHHHHHHH
Confidence 24566666777776667666666544
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.40 E-value=1.1e-05 Score=79.79 Aligned_cols=166 Identities=10% Similarity=-0.035 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
..+++..+..++.++|++..+|+.++.++...+ ++++++..++.++..+|++..+|..|..++...+. +
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--------~ 148 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--------Y 148 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 467888899999999999999999999988876 78999999999999999999999999988877665 6
Q ss_pred HHHHHHHHHHHHhcCCCch--hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516 192 ERESELVEKIAERSKMNYR--AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN 269 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~--AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~ 269 (423)
++.+..+.++++.+|.+.. .|.+ +.... ....+.+....+.+...+.+..+|......+.++
T Consensus 149 ~eA~~~~~~al~~~P~~~~~~~~~~---l~~~~--~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~----------- 212 (296)
T PRK11189 149 ELAQDDLLAFYQDDPNDPYRALWLY---LAESK--LDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKI----------- 212 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH---HHHcc--CCHHHHHHHHHHHHhhCCccccHHHHHHHHccCC-----------
Confidence 8899999999999998863 2221 11111 2356777777666655444433342222111110
Q ss_pred CCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 270 SSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.. ...+....+.....+..+|....+|+|+..+..
T Consensus 213 -----~~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 213 -----SE-ETLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred -----CH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 00 012222222233445566777789999877664
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=2.3e-05 Score=67.27 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=111.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516 118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (423)
Q Consensus 118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (423)
.+..++..+|++..+-..+...+...+ .+++++.....++..+|.+..+|..+..++...+. +...+..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~ 73 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQG---RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--------YEEAIDA 73 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 467889999999988877887777664 78999999999999999999999999999887765 6788889
Q ss_pred HHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
+.++++.+|.+...|.+++++....+. +...+....+.++.+|.+..++-++..+...
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGE--PESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999887765 8899999999999999999988887766543
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.35 E-value=4.2e-05 Score=75.63 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHH---hCCCc-HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516 112 AIEVMIHSKALLL---LSCDF-ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 112 ~~~~L~~t~~lLl---~nPe~-~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~ 187 (423)
.+..+.....+|. ++|+. ..+|..|+.+....+ ...+++..+..++..+|+++.+|+.+..++...+.
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~----- 113 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG---LRALARNDFSQALALRPDMADAYNYLGIYLTQAGN----- 113 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----
Confidence 4556666777775 44444 688999999988876 78899999999999999999999999999988776
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~ 245 (423)
++..+....++++.+|.+..+|..|+.++...+. +++.++.+++.+..+|.|.
T Consensus 114 ---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 114 ---FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence 7889999999999999999999999999887765 8999999999999999986
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.18 E-value=0.00054 Score=62.37 Aligned_cols=162 Identities=10% Similarity=-0.061 Sum_probs=128.2
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..+++++....++..+|++..+|..+..+....+ +..+.+.....++..+|++..+|.....++...+.
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~-------- 114 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLG---ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK-------- 114 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------
Confidence 3578899999999999999999999999888875 78999999999999999999999998888876654
Q ss_pred HHHHHHHHHHHHHhc--CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516 191 IERESELVEKIAERS--KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN 268 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~--pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~ 268 (423)
+.+.+..+.+++... |....+|.....+....+. +.+....+.+.+..+|.+.-+|..+..+.....
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------- 183 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLTRALQIDPQRPESLLELAELYYLRG--------- 183 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC---------
Confidence 678888888888753 5556677777766655544 788899999999999998888776665555421
Q ss_pred CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
-+++.+.+..+++...|.+...|...
T Consensus 184 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (234)
T TIGR02521 184 -----------QYKDARAYLERYQQTYNQTAESLWLG 209 (234)
T ss_pred -----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 25667777888887777776666543
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=5.5e-05 Score=80.20 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHh-------hcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHH
Q 014516 80 PVYKAAKHAFISALRQ-------YKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDE 152 (423)
Q Consensus 80 ~lY~~A~~~f~~~l~~-------y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~E 152 (423)
.-+..|...|.++++- |-=++.+. ...+..+.+..+++.+|.++|.||-||.-=+.+..+.+ .++.+
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~---~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe---k~e~A 508 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHES---IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE---KLEFA 508 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChh---hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc---hhhHH
Confidence 3577888888888762 10011111 12455688999999999999999999999998887764 68888
Q ss_pred HHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHH
Q 014516 153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELK 232 (423)
Q Consensus 153 L~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~ 232 (423)
.-.+.+++.+||.+-.+=.|=.-++.+++. .++.|.+.++|+-.||+|-++=.||.-++..+++ +.++|.
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~--------~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--~~eal~ 578 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQLKR--------KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR--YVEALQ 578 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHHhhh--------hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--hHHHHH
Confidence 999999999999999999999988888876 4789999999999999999999999999988766 788888
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 233 KSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 233 ~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
..+++=..-|.+-+..+-...+..++
T Consensus 579 ~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 579 ELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 88888888899988877777666665
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.15 E-value=0.00076 Score=74.13 Aligned_cols=131 Identities=15% Similarity=-0.077 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++...|++..+|+....+....+ .+++++..+..++..+|++..+|.....+....+.
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-------- 514 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG---DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-------- 514 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC--------
Confidence 3566777777777777777777777777776664 56777777777777777777777766665554433
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
+.+.+..+.++++.+|.+..+|.....+....+. ..+.+..+.+.+..+|.+...+.....+
T Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 4556666666666666666666666555544433 4555666666666666666555444333
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.07 E-value=0.00019 Score=78.82 Aligned_cols=156 Identities=9% Similarity=-0.080 Sum_probs=122.9
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHH----HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILM----DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST 186 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~----~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~ 186 (423)
..++++.....++..+|++..+++....++...+ .+. +++..+..++..+|.+..+|....+++...+.
T Consensus 227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G---~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---- 299 (656)
T PRK15174 227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSG---RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ---- 299 (656)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC----
Confidence 4577889999999999999999999998888775 334 37999999999999999999999998887765
Q ss_pred hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccC
Q 014516 187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQ 266 (423)
Q Consensus 187 ~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~ 266 (423)
+++.+..+.++++.+|.+-.++.+..-++...+. +++.++.+.+.+..+|.+..++.++..++....
T Consensus 300 ----~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G------- 366 (656)
T PRK15174 300 ----NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAALLQAG------- 366 (656)
T ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC-------
Confidence 6888899999999999999999998888877765 788899999999999987654444455444321
Q ss_pred CCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516 267 DNNSSGYFVETYQIWKEELDWNESLIKQYVGRE 299 (423)
Q Consensus 267 ~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne 299 (423)
-.++.+....+++..+|.+.
T Consensus 367 -------------~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 367 -------------KTSEAESVFEHYIQARASHL 386 (656)
T ss_pred -------------CHHHHHHHHHHHHHhChhhc
Confidence 14555666666666666653
No 24
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.07 E-value=0.00014 Score=67.86 Aligned_cols=126 Identities=6% Similarity=-0.034 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHH-HHhhhccChhH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVI-NMISRNCSTLQ 188 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll-~~l~~~~~~~~ 188 (423)
...++++.....+|..||++..+|...+++....+ ++++++..+..++..+|++..+|....-++ ...+..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g---~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~----- 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN---DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH----- 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-----
Confidence 44588899999999999999999999999998876 899999999999999999999999988765 343331
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS 246 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S 246 (423)
...+...++.++++.+|+|-.+++.........+. +++.+...+++++.+|.+-+
T Consensus 125 -~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 125 -MTPQTREMIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred -CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcc
Confidence 13788899999999999999999999999877765 89999999999999888663
No 25
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.07 E-value=0.00034 Score=76.84 Aligned_cols=165 Identities=8% Similarity=-0.103 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
++++..+..++..+|++..+|.....++...+ .+.+.+.++..++..+|.+..+|..+..+....+. +.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~ 210 (899)
T TIGR02917 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN---RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN--------IE 210 (899)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC--------HH
Confidence 44445555555555555555544444444432 44555555555555555555555554444433322 34
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcCh--------------------------------hhHHHHHHHHHHHHhc
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------------------------------EQVLDELKKSRNWSGL 240 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------------------------------~~~~~EL~~~~k~i~~ 240 (423)
..+....++++.+|.+..+|..+..++...+. ..+.+.+..+.+.+..
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44444445555555555544444444433322 1244444444444444
Q ss_pred cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 241 HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 241 d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
+|.+..++.....+.... .-+++.+.+..+++..+|.+..++..+..+
T Consensus 291 ~~~~~~~~~~~~~~~~~~--------------------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 338 (899)
T TIGR02917 291 APEYLPALLLAGASEYQL--------------------GNLEQAYQYLNQILKYAPNSHQARRLLASI 338 (899)
T ss_pred CCCchhHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 444444443333332221 125566777777888888877666554433
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.05 E-value=0.00023 Score=81.14 Aligned_cols=157 Identities=6% Similarity=-0.151 Sum_probs=130.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.++..++..+|++..+...-...+...+ ++.+++..+..++..+|. ..+|.....++.+++.
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G---r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~-------- 624 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG---QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN-------- 624 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC--------
Confidence 4477888899999999988766553222222223 789999999999999996 8999999988888776
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
.++.+..+.++++.+|.|..++....+++...+. .++.++.+.+.+..+|.|..+|..+..++..+.
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~--~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG----------- 691 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGD--IAQSREMLERAHKGLPDDPALIRQLAYVNQRLD----------- 691 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------
Confidence 6889999999999999999999999999988765 788999999999999999999999999887752
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREAL 301 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa 301 (423)
-+++.+.+..++|..+|++..+
T Consensus 692 ---------d~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 692 ---------DMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred ---------CHHHHHHHHHHHHhcCCCCchh
Confidence 2567788888888888877544
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.00016 Score=76.70 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHH
Q 014516 149 LMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVL 228 (423)
Q Consensus 149 ~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~ 228 (423)
++.++..+..+|..+|.+|-+|+--+-+..+..+ ++.+.-...+|++.+|+|--.=+|-+-+..+++. .+
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek--------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d 540 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK--------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KD 540 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hh
Confidence 4445555555555555555555554444443332 3444445555555555555555555555555443 56
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 229 DELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 229 ~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
+.|.+++++|.+||.|-.+=.+|..++..+.. +.++|.-.+.+-..-|.+-++.+-...+
T Consensus 541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--------------------~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPKNPLCKYHRASILFSLGR--------------------YVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--------------------hHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 77888888888888888888888877776532 3455555555555568877776655444
Q ss_pred H
Q 014516 309 S 309 (423)
Q Consensus 309 l 309 (423)
.
T Consensus 601 ~ 601 (638)
T KOG1126|consen 601 Y 601 (638)
T ss_pred H
Confidence 4
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0019 Score=66.80 Aligned_cols=187 Identities=10% Similarity=0.073 Sum_probs=113.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHH
Q 014516 117 IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESE 196 (423)
Q Consensus 117 ~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~ 196 (423)
....++|.++|.+.....+|..+..... .-++-...++.+...||.++.+++||..+..-+.. ++..+.
T Consensus 347 ~d~~~~I~l~~~~~~lyI~~a~~y~d~~---~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------~e~A~a 415 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSLYIKRAAAYADEN---QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------YEEAIA 415 (606)
T ss_pred hhHHHHHhcCcccchHHHHHHHHHhhhh---ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------HHHHHH
Confidence 3455566666666666555555544432 33445566666666666666666666655544433 455666
Q ss_pred HHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhc
Q 014516 197 LVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVE 276 (423)
Q Consensus 197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~ 276 (423)
-..++..++|.|-.+.-..+.++=+... +.+-+..++..++.=|+--.+.++-..+|.-
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k--~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD------------------- 474 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHK--IAESMKTFEEAKKKFPNCPEVYNLFAEILTD------------------- 474 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-------------------
Confidence 6666666666666665555555433332 4455555556666666666666655554432
Q ss_pred hHHHHHHHHHHHHHHHhhcCC------CccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHh
Q 014516 277 TYQIWKEELDWNESLIKQYVG------REALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHS 350 (423)
Q Consensus 277 ~~~~~~eEL~~~~~~I~~~p~------neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~ 350 (423)
.+-+...++..+.+|++.|. |-..-.+...++..|- +=+.+=++|+..
T Consensus 475 -qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-------------------------~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 475 -QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-------------------------EDINQAENLLRK 528 (606)
T ss_pred -HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-------------------------hhHHHHHHHHHH
Confidence 23478888999999999999 7777777665554322 113445678889
Q ss_pred hhccCccchhh
Q 014516 351 CSTTIADANFE 361 (423)
Q Consensus 351 ~~~~dp~D~~~ 361 (423)
|++.||..++-
T Consensus 529 A~e~Dpkce~A 539 (606)
T KOG0547|consen 529 AIELDPKCEQA 539 (606)
T ss_pred HHccCchHHHH
Confidence 99999997543
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.84 E-value=0.0014 Score=71.88 Aligned_cols=131 Identities=7% Similarity=-0.155 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (423)
...+++..+..++..+|.+..++.....++...+... +.....+..+.++++.+|.+..+|....+++...+. +
T Consensus 227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~----eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~ 300 (656)
T PRK15174 227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR----EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ--N 300 (656)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--H
Confidence 5677778888888888888888877777666655421 111246889999999999999999999988887765 7
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
++.+..+++.+..+|.|..++.++..++.+.. -+++.++....++..+|.+..++.+
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G--------------------~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVG--------------------QYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHhCccchHHHHH
Confidence 88899999999999999999888877666531 2577788888999999987643333
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.83 E-value=0.00097 Score=76.17 Aligned_cols=125 Identities=9% Similarity=-0.007 Sum_probs=113.6
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
...++++..+..++.++|+ ..+|.....++...+ ..++++..+..++..+|++..+++...+++...+.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~------- 658 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD------- 658 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------
Confidence 4568899999999999997 899999999998886 78999999999999999999999999999998765
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF 248 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW 248 (423)
.++.+.++.++++.+|.+..+|.++.+++..++. .++.+..+++.+..+|.+...=
T Consensus 659 -~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 659 -IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchhh
Confidence 6889999999999999999999999999998876 7889999999999999776543
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.80 E-value=0.001 Score=56.97 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=102.6
Q ss_pred HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS 234 (423)
Q Consensus 155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (423)
.+..++..+|++..+=.-+...+...+. +.+.+....+++..+|.+-.+|...+.+...++. +.+.+..+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~ 74 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGR--------YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--YEEAIDAY 74 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4678899999998775555555554443 6788899999999999999999999999877654 78889999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.+.+..+|.+...|.++..+..... -+++.+.+...++..+|++...+-+.+.+..
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLALG--------------------EPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999998776641 2677888899999999999998888776643
No 32
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00045 Score=70.31 Aligned_cols=101 Identities=9% Similarity=-0.071 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.++..+|.++|++..+|..|..++...+ .+.+++..+..++..+|++..+|..+..++..++.
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-------- 85 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLG---NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-------- 85 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--------
Confidence 4578999999999999999999999999998886 89999999999999999999999999998888776
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM 222 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~ 222 (423)
+...+..+.++++.+|.|-.+......+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999987765555554433
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.79 E-value=0.002 Score=75.21 Aligned_cols=193 Identities=8% Similarity=-0.018 Sum_probs=133.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH--hHH-----HHHHHHHhhhc
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA--WSH-----RRWVINMISRN 183 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~--W~h-----Rrwll~~l~~~ 183 (423)
..++++..+..+|.++|++..++.....++...+ .+++++..+..++..+|++... |.. +-|+.......
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQG---DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 3578999999999999999999999999988875 7899999999999999998643 421 22222211110
Q ss_pred cChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccc
Q 014516 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFC 263 (423)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~ 263 (423)
.. ...-+.+.+..+.++++.+|.+..++.....+....+. +++.++.+++.+..+|.|..++.....+.........
T Consensus 361 ~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 361 AL-KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 00 01126889999999999999999999999888877665 8899999999999999999998877665432100000
Q ss_pred ------ccCC-C-C-------C--C-----CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 264 ------YTQD-N-N-------S--S-----GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 264 ------~~~~-~-~-------~--~-----~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
.... . . . . +.......-+++.++...+++..+|++..+++.+..++
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0000 0 0 0 0 00000112456778888888888898766665544433
No 34
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.73 E-value=0.001 Score=62.08 Aligned_cols=126 Identities=5% Similarity=-0.031 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHH-HhcChh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV-SFMTRE 225 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll-~~~~~~ 225 (423)
...++.+..+...|..+|++.+.|.....++...+. +.+.+..+.++++.+|+|-.+|....-++ ...+..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------YDNALLAYRQALQLRGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence 456888999999999999999999999988887766 68999999999999999999999988765 444432
Q ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
...+..+.+++.++.||.|..++........... -+++.+.+..+++..+|.+.+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g--------------------~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQA--------------------DYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhhCCCCcc
Confidence 3578899999999999999999999998877641 378889999999999888664
No 35
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.73 E-value=0.0011 Score=70.16 Aligned_cols=167 Identities=10% Similarity=-0.041 Sum_probs=144.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
...++.+++.++|.++|.|..+-|.-+.+-...+ .++++..|..+.|..+|.+..+-+.-.-++++-++
T Consensus 335 ~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~---~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn-------- 403 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG---KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN-------- 403 (966)
T ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc--------
Confidence 4588999999999999999999998888777664 67999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+.+.+.+...++...|..-.|.+.++-.+..+++ ....++..++.|..+|.--.|.+....+..-.
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~--v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs------------ 469 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD--VSAAIQCYTRAIQINPTFAEAHSNLASIYKDS------------ 469 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh--HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc------------
Confidence 7899999999999999999999999999988876 78899999999999999989988877654321
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
| ...+.++-..+++.+.|+-..+.+++-..++
T Consensus 470 -G-------ni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 470 -G-------NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred -C-------CcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 1 2467788889999999999999998755443
No 36
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.69 E-value=0.002 Score=68.34 Aligned_cols=186 Identities=11% Similarity=-0.004 Sum_probs=147.2
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
.-+++|..+..++.+.|++..||.....++...+ +.+.+..++..+|+.||..|.+=.+-.-+++..+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~---~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr-------- 199 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQG---DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR-------- 199 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcC---CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc--------
Confidence 3588999999999999999999999999998876 67889999999999999999999999988887766
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc----c---
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF----C--- 263 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~----~--- 263 (423)
+.+.-.+..++++.+|-.-=||+.-+-++..-+. ....+...++.+.+||.--.|+-..+-|+..+.... +
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 6778889999999999999999998887765544 667899999999999999999999999887653210 0
Q ss_pred -ccCCCCC---CCch---hchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 264 -YTQDNNS---SGYF---VETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 264 -~~~~~~~---~~~~---~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
...++.. -|.- ---...++-.++..+++|+..|+-.-+.++....+
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANAL 330 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence 0111110 0100 00013566678888899999999998888865544
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.62 E-value=0.0078 Score=60.80 Aligned_cols=158 Identities=10% Similarity=-0.111 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH--h-HHHH--HHHHHhhhccC
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA--W-SHRR--WVINMISRNCS 185 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~--W-~hRr--wll~~l~~~~~ 185 (423)
..++++..+..++..+|.+..+++....+....+ .+++++.....++..+|.+... . .+.. .++...+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---- 194 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK---DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG---- 194 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC----
Confidence 3577888999999999999999999888887765 7899999999999988876431 1 1111 1111111
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH-HHHHHHHHHHhhhcccc
Q 014516 186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC-FHYRRRLMLRNLEGFCY 264 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa-W~yR~~Ll~~l~~~~~~ 264 (423)
.+.+.+..+.++++.+|.+..+|....-+....+. +++.++.+.+++..+|.+... +.....++...
T Consensus 195 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~------ 262 (389)
T PRK11788 195 ----DLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALERVEEQDPEYLSEVLPKLMECYQAL------ 262 (389)
T ss_pred ----CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc------
Confidence 26888899999999999999888887777766554 788899999999998876533 33333332221
Q ss_pred cCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516 265 TQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREAL 301 (423)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa 301 (423)
.-+++.+.+..+++..+|++..+
T Consensus 263 --------------g~~~~A~~~l~~~~~~~p~~~~~ 285 (389)
T PRK11788 263 --------------GDEAEGLEFLRRALEEYPGADLL 285 (389)
T ss_pred --------------CCHHHHHHHHHHHHHhCCCchHH
Confidence 12567788888889889977543
No 38
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0017 Score=67.76 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHH
Q 014516 81 VYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVL 160 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL 160 (423)
.|..|...|.+++..+|+....+ .....++++........++|+-.+--..++......+ ++..++.-++.++
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls----~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g---dy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLS----KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG---DYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHH----HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHH
Confidence 57777788888777776522111 1234578888999999999999887777777666654 8999999999999
Q ss_pred HhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516 161 SYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL 240 (423)
Q Consensus 161 ~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~ 240 (423)
.++|++..++..|.-++.+|+. +...|.-|.++++.||.+.-+|...+-++..|.. |.+.++.+.+.++.
T Consensus 386 kr~P~Da~lYsNRAac~~kL~~--------~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~--ydkAleay~eale~ 455 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYLKLGE--------YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE--YDKALEAYQEALEL 455 (539)
T ss_pred hcCCchhHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 9999999999999999999987 6788899999999999999999999999888754 89999999999999
Q ss_pred cCCChhHHH
Q 014516 241 HVADNSCFH 249 (423)
Q Consensus 241 d~~N~SaW~ 249 (423)
||+|--+-.
T Consensus 456 dp~~~e~~~ 464 (539)
T KOG0548|consen 456 DPSNAEAID 464 (539)
T ss_pred CchhHHHHH
Confidence 998865443
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.55 E-value=0.0051 Score=71.88 Aligned_cols=194 Identities=9% Similarity=-0.100 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHH--HH------------HHHHHHHc
Q 014516 81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATA--WN------------SRKLIVSN 142 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~Ta--Wn------------~Rk~lL~~ 142 (423)
-|..|...|.++++........ ...-......++++..++.++..+|++..+ |. .+..+...
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4777788887777643211000 000001234678999999999999987532 31 11223333
Q ss_pred cCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516 143 KRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM 222 (423)
Q Consensus 143 ~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~ 222 (423)
. ..+.+++..+..++..+|++..++.....++...+. +++.+..+.++++.+|.|-.+|.....+....
T Consensus 364 ~---g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--------~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 364 A---NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--------YAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred C---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3 378999999999999999999999988888877665 68899999999999999988886544443210
Q ss_pred ----------------------------------------ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc
Q 014516 223 ----------------------------------------TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF 262 (423)
Q Consensus 223 ----------------------------------------~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~ 262 (423)
....+.+.++.+++.+..+|.|..++..+..++.+..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G--- 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG--- 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Confidence 0123567788999999999998877766666655431
Q ss_pred cccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 263 CYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
.+++.+....+++..+|.+..+++-+
T Consensus 510 -----------------~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 510 -----------------QRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred -----------------CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 26777888888999999998887654
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0017 Score=67.26 Aligned_cols=201 Identities=10% Similarity=-0.009 Sum_probs=153.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCC----CCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHH
Q 014516 75 TQILIPVYKAAKHAFISALRQYKTPGNFSGK----SQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILM 150 (423)
Q Consensus 75 ~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~----~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~ 150 (423)
++.|..-+..|..-|.++|+...+..+.--+ -.+.+-+.+..+....+..+||++..+.++|+++..-++ .++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~---q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ---QYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH---HHH
Confidence 4445555667777777777643221110000 002344677888999999999999999999999887764 789
Q ss_pred HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH
Q 014516 151 DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE 230 (423)
Q Consensus 151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E 230 (423)
+++.=+++..+.+|.+.-.......++-+... +.+-+...+.+.++.|++--+.++-.-++.-- .++...
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k--------~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq--qqFd~A 481 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHK--------IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ--QQFDKA 481 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH--HhHHHH
Confidence 99999999999999998887777776665543 67788899999999999999999877766432 358899
Q ss_pred HHHHHHHHhccCC------ChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 231 LKKSRNWSGLHVA------DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 231 L~~~~k~i~~d~~------N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
++..++.|.+.|+ |.-..-+...++.+.. .-+...++.+.++|+.||.-+-+---
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-------------------~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-------------------EDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhchh-------------------hhHHHHHHHHHHHHccCchHHHHHHH
Confidence 9999999999999 8888888887777642 23677889999999999998877655
Q ss_pred HHH
Q 014516 305 RRF 307 (423)
Q Consensus 305 rr~ 307 (423)
...
T Consensus 543 laq 545 (606)
T KOG0547|consen 543 LAQ 545 (606)
T ss_pred HHH
Confidence 443
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.0032 Score=64.11 Aligned_cols=103 Identities=8% Similarity=-0.010 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
..+.+++.++..+|..+|.++.+|.+|..++..++. +.+.+..+.++++.+|.+..+|..++.++..++.
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-- 85 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------FTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-- 85 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--
Confidence 478999999999999999999999999999988876 7899999999999999999999999998888765
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL 259 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~ 259 (423)
+.+.+..+++.+.++|.|..+......+..++.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999998888887766663
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.42 E-value=0.023 Score=51.53 Aligned_cols=162 Identities=7% Similarity=-0.045 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCC----CCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516 81 VYKAAKHAFISALRQYKTPGNFSG----KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS 156 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~~~----~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~ 156 (423)
-|..|...|.+++.........-. --......+++++....++..+|.+..+++....++...+ .+++++..+
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~ 122 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG---KYEQAMQQF 122 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---cHHHHHHHH
Confidence 466777777776653211000000 0001234578899999999999999999999999888775 789999999
Q ss_pred HHHHHhC--CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516 157 ALVLSYS--PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS 234 (423)
Q Consensus 157 ~~lL~~n--PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (423)
..++... |....+|.....+....+. +......+.++++.+|.+..+|.....+....+. +++.+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~ 192 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGD--------FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYL 192 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 9999853 5566677776666655544 6788899999999999998888888777766654 78888899
Q ss_pred HHHHhccCCChhHHHHHHHHH
Q 014516 235 RNWSGLHVADNSCFHYRRRLM 255 (423)
Q Consensus 235 ~k~i~~d~~N~SaW~yR~~Ll 255 (423)
.+.+...+.+...|.....+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 193 ERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHHhCCCCHHHHHHHHHHH
Confidence 999988777767766544443
No 43
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0012 Score=64.52 Aligned_cols=104 Identities=8% Similarity=0.003 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
.++++++...+.+|..+|+++..+..|.-++.+|+. +...++-|++++..||+...||.--+...-.+++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-- 164 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-- 164 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc--
Confidence 479999999999999999999999999999999986 6889999999999999999999988888777766
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhh
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLE 260 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~ 260 (423)
+++.++.+.|.+++||.|-+.|......-.++.+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 7888999999999999999999999988777644
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.39 E-value=0.02 Score=57.83 Aligned_cols=120 Identities=8% Similarity=-0.029 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch----hHhHHHHHHHHHhhhccChh
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE----QAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y----~~W~hRrwll~~l~~~~~~~ 187 (423)
.++++..+..++..+|++..+|.....++...+ .+.+.+.....++...+... .+|..-..++...+.
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~----- 122 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRG---EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL----- 122 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence 456888888888888888888888877776654 56777777777666432221 223222322222221
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
+...+.+..++++.+|.+..++.....+....+. +++.++...+++..+|.+
T Consensus 123 ---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 123 ---LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD--WQKAIDVAERLEKLGGDS 174 (389)
T ss_pred ---HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch--HHHHHHHHHHHHHhcCCc
Confidence 4556666666666666666666555555444332 555666666666665554
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.37 E-value=0.0029 Score=69.70 Aligned_cols=125 Identities=8% Similarity=-0.120 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
-..++++.+...++.+.|+|..|+..+..+|...+ .+++++.....+|...|+++++-+++.-++.+++.
T Consensus 100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~------- 169 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ---GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ------- 169 (694)
T ss_pred CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-------
Confidence 35689999999999999999999999999999885 79999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC 247 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa 247 (423)
+++.+++.++++..+|.+-.+|.-+.-++..++. .++....+.+.+..-..-.-.
T Consensus 170 -~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 170 -SEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred -hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhCcchHH
Confidence 6899999999999999999999999999988875 556666666666554433333
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.35 E-value=0.061 Score=50.58 Aligned_cols=144 Identities=10% Similarity=-0.052 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh---HhHHHHHHHHHhhhccC
Q 014516 112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ---AWSHRRWVINMISRNCS 185 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~---TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~---~W~hRrwll~~l~~~~~ 185 (423)
.++++.....++..+|++. .+|.....++...+ .+++++..+..++..+|+++. +|..+..+.........
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG---DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 4678999999999999876 57888888888875 799999999999999999887 58777777765421100
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCCchhchHH---HHHHHhc------------ChhhHHHHHHHHHHHHhccCCC---hhH
Q 014516 186 TLQWIIERESELVEKIAERSKMNYRAWNHR---CWLVSFM------------TREQVLDELKKSRNWSGLHVAD---NSC 247 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR---~wll~~~------------~~~~~~~EL~~~~k~i~~d~~N---~Sa 247 (423)
.........+..+.+++..+|.+-.+|.-. .++.... ....+.+.+....+.+...|.+ ..+
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a 205 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA 205 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence 001236788999999999999997776222 2221111 1124778899999999987754 367
Q ss_pred HHHHHHHHHHh
Q 014516 248 FHYRRRLMLRN 258 (423)
Q Consensus 248 W~yR~~Ll~~l 258 (423)
|..+..+..++
T Consensus 206 ~~~l~~~~~~l 216 (235)
T TIGR03302 206 LARLVEAYLKL 216 (235)
T ss_pred HHHHHHHHHHc
Confidence 77777666654
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.35 E-value=0.025 Score=62.50 Aligned_cols=134 Identities=8% Similarity=-0.131 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
..++|.-......--|.+..+-..=.++..+.+ .+++.+.+...++...|++..++.++.-+|.+... +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------~ 136 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------I 136 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------H
Confidence 455555555556667777777777778888876 78999999999999999999999999999999876 7
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
++.+..+++++..+|.|..+=+++.-++..++. +++.++.+++.+..||.+-.+|--+..++..+
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999887 89999999999999999999999999999875
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.26 E-value=0.027 Score=56.39 Aligned_cols=134 Identities=14% Similarity=0.045 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
.++|..+-+++..||++|.|..-|.-+..+++ .-.-.|.=++.+|...|+++.+=..|.-++.+.+. ++
T Consensus 55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmG---ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge--------le 123 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMG---KSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE--------LE 123 (504)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhc---CCccchhhHHHHHhcCccHHHHHHHhchhhhhccc--------HH
Confidence 56888899999999999999999999988887 44677888899999999999999999999988776 55
Q ss_pred HHHHHHHHHHHhcCCCchh-------------chHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 193 RESELVEKIAERSKMNYRA-------------WNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~A-------------W~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
....-....++.+|.|-.. |.-|..+.+..+..+....+++++..++.-|=|-|-..+|.-.+-.
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 5666667777777755432 3444444444433456677788888888877777777777665443
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.24 E-value=0.012 Score=64.89 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+++......++..+|.++.+|.+=+.+-+..| +.++.+.+--.+...||+++..|.+=.-+..+++. +
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG---d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~--------i 223 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG---DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN--------I 223 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc---cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--------H
Confidence 488999999999999999999999999999987 88999999999999999999999987777776654 7
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~ 242 (423)
..+.-+..++++.+|.|+.--.-|.-+.++++. ...++.-..+++..+|
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHHHHHhhCC
Confidence 899999999999999997655557777777765 5666777777777766
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.23 E-value=0.0087 Score=58.20 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 112 AIEVMIHSKALLLLS--CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 112 ~~~~L~~t~~lLl~n--Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
.+++.+..+.+.... |.+..+|..+..+....| ...+++.++..+|..+|++..++..-.|++...+.
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~------- 195 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG---DPDKALRDYRKALELDPDDPDARNALAWLLIDMGD------- 195 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-------
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------
Confidence 455556666655544 678999999999999886 78999999999999999999999998888765544
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
..+...++....+..|.|-..|..-.++...++. .++.+.++.+.+..+|.|.....+...++...
T Consensus 196 -~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 196 -YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred -hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--cccccccccccccccccccccccccccccccc
Confidence 3444567777777778999999999999988876 78999999999999999999988888877764
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.003 Score=47.73 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh-hccChhHHhHHHHHHHHHHHHHhcC
Q 014516 128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS-RNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~-~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
++..+|+.++.++...+ ++++++..++.++..+|+++.+|..|.-+...++ . +.+.+..++++++.+|
T Consensus 1 e~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~--------~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQG---DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD--------YEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHcCc
Confidence 35678999999888875 7999999999999999999999999999988876 4 6888999999999988
No 52
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0028 Score=62.02 Aligned_cols=104 Identities=14% Similarity=0.012 Sum_probs=93.0
Q ss_pred ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516 109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ 188 (423)
Q Consensus 109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~ 188 (423)
.....+++..++.+|.++|.+....-.|.....+++ .+..+++-+..+|.++|.+..+|.--..+...+++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg---~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk------ 164 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG---EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK------ 164 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc---chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc------
Confidence 455799999999999999999999999999999987 68999999999999999999999888877776665
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (423)
+...++...++|++||.|-..|++-.|.-..+.
T Consensus 165 --~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 165 --YEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred --HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 678888899999999999999999888876664
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.10 E-value=0.034 Score=62.30 Aligned_cols=165 Identities=8% Similarity=-0.068 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhH---------------
Q 014516 111 LAIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWS--------------- 171 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~----TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~--------------- 171 (423)
..++++..+..++..+|.+. .+.......+... ..+++++..+..++..+|+...++.
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~---g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLES---ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 35778888888888887763 2222222233333 3688889999999988887654442
Q ss_pred HHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516 172 HRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYR 251 (423)
Q Consensus 172 hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR 251 (423)
.+..++...+ .+.+.+.++.+++..+|.|..+|..+.-+....+. ..+.++.+++.+..+|.|...+..+
T Consensus 364 ~~a~~l~~~g--------~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 364 LLSQVAKYSN--------DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHHHHH
Confidence 1222222221 26888999999999999999999999999877765 7889999999999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 252 RRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 252 ~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
..+..+.. -+++....+.+++..+|+|..+=.+.|-.
T Consensus 434 a~~al~~~--------------------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 434 AWTALDLQ--------------------EWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHhC--------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88665531 27788889999999999999888777654
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.06 E-value=0.018 Score=55.94 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHh--CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516 148 ILMDELHLSALVLSY--SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~--nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~ 225 (423)
..++...++..+... .|.++.+|.++..+..+.+. ..+.+.++.++++.+|.|-.++..-.|++-..+.
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~- 195 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--------PDKALRDYRKALELDPDDPDARNALAWLLIDMGD- 195 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-
Confidence 567777777776553 37899999999999988776 6889999999999999999999999999866554
Q ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
..+..+.+..+....|+|...|.....+...+. ..++.+.+..+++..+|.|.....+.
T Consensus 196 -~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg--------------------~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 196 -YDEAREALKRLLKAAPDDPDLWDALAAAYLQLG--------------------RYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---------------------HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred -hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc--------------------cccccccccccccccccccccccccc
Confidence 455567777777777899999998888887752 26789999999999999999888876
Q ss_pred HHHHH
Q 014516 306 RFLSM 310 (423)
Q Consensus 306 r~Ll~ 310 (423)
..++.
T Consensus 255 a~~l~ 259 (280)
T PF13429_consen 255 ADALE 259 (280)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 66553
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.01 E-value=0.024 Score=63.51 Aligned_cols=130 Identities=10% Similarity=-0.005 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+++++....++..+|....++.....++...+ .+.+++.++..+|..+|.+..+|.-..-++...+. .
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~--------~ 99 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK---QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ--------Y 99 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 355556666666666666666666666665554 55666666666666666666666543333333222 4
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll 255 (423)
.+.+..+.++++.+|.+.. |.-...++...+. ..+.+..+++++..+|.|..++.....++
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5666666666666666666 6555555555443 55666666666666666666665554444
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.99 E-value=0.11 Score=48.90 Aligned_cols=169 Identities=7% Similarity=-0.064 Sum_probs=112.2
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE 203 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (423)
+....++..+...+...+ .+.+++..+..++..+|.++ .+|.+..-++...+. +...+..+.++++
T Consensus 30 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------~~~A~~~~~~~l~ 98 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG---DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------YAEAIAAADRFIR 98 (235)
T ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHH
Confidence 344556666666665554 68999999999999999987 466777666666544 7899999999999
Q ss_pred hcCCCch---hchHHHHHHHhcC------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCch
Q 014516 204 RSKMNYR---AWNHRCWLVSFMT------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYF 274 (423)
Q Consensus 204 ~~pkNY~---AW~hR~wll~~~~------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~ 274 (423)
.+|++.. +|..++.+..... .......+..+.+.+..+|.+-.+|.-...+... ..... ......+..
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~-~~~~~--~~~~~~a~~ 175 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL-RNRLA--GKELYVARF 175 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH-HHHHH--HHHHHHHHH
Confidence 9999988 6888888776541 1246788999999999999998887544322111 00000 000000000
Q ss_pred hchHHHHHHHHHHHHHHHhhcCCCc---cHHHHHHHHH
Q 014516 275 VETYQIWKEELDWNESLIKQYVGRE---ALWLHRRFLS 309 (423)
Q Consensus 275 ~~~~~~~~eEL~~~~~~I~~~p~ne---SaW~yrr~Ll 309 (423)
.....-+.+.+.....++..+|++. .+|..+..+.
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAY 213 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH
Confidence 0011236778899999999988753 5677655544
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.85 E-value=0.064 Score=60.40 Aligned_cols=160 Identities=6% Similarity=-0.143 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHH--HHHHhhhccChhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWN-SRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRW--VINMISRNCSTLQW 189 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn-~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrw--ll~~l~~~~~~~~~ 189 (423)
..+++...++|..+|++..+.+ +-.... .. ....+++..+++++ .|.+......+.. +....+.
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~---G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gd------- 117 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAG-WA---GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKR------- 117 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHH-Hc---CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCC-------
Confidence 4788888888888888853333 111111 12 24567777777777 3333333333322 2222222
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN 269 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~ 269 (423)
+.+.++++.++++.+|.|-.++..- .+........++.++.+.++...+|.+... -.+.++.....
T Consensus 118 -yd~Aiely~kaL~~dP~n~~~l~gL--a~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~---------- 183 (822)
T PRK14574 118 -WDQALALWQSSLKKDPTNPDLISGM--IMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD---------- 183 (822)
T ss_pred -HHHHHHHHHHHHhhCCCCHHHHHHH--HHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc----------
Confidence 5677778888888888887777533 222222234667777777777777775443 33333332210
Q ss_pred CCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 270 SSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
-..++++..++++..+|+|..+..-+-.++
T Consensus 184 ----------~~~~AL~~~ekll~~~P~n~e~~~~~~~~l 213 (822)
T PRK14574 184 ----------RNYDALQASSEAVRLAPTSEEVLKNHLEIL 213 (822)
T ss_pred ----------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 122377777777777777777765544433
No 58
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.76 E-value=0.01 Score=44.82 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=59.6
Q ss_pred chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516 166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 166 ~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~ 242 (423)
+..+|..+.-++...+. +.+.+..+.++++.+|.+..+|..++-+...++. .+.+.++.+++.+++||
T Consensus 2 ~a~~~~~~g~~~~~~~~--------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD--------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH--------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHcCc
Confidence 56788888888877665 7899999999999999999999999999988862 37899999999999987
No 59
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.74 E-value=0.042 Score=41.32 Aligned_cols=97 Identities=13% Similarity=0.022 Sum_probs=64.3
Q ss_pred HHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516 133 WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (423)
Q Consensus 133 Wn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (423)
|..+..+....+ .+.+.+..+..++...|++..+|..+..++..... +...+..+..++...|.+..+|
T Consensus 3 ~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 3 LLNLGNLYYKLG---DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------YEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHHHh---cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCcchhHH
Confidence 444444444443 56777888888888888887777777777766544 5677777888888888877777
Q ss_pred hHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516 213 NHRCWLVSFMTREQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 213 ~hR~wll~~~~~~~~~~EL~~~~k~i~~d~ 242 (423)
.....+....+. +......+.+.+..+|
T Consensus 72 ~~~~~~~~~~~~--~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYYKLGK--YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHHHHccCC
Confidence 666655544433 5555666666666554
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.57 E-value=0.47 Score=53.57 Aligned_cols=160 Identities=13% Similarity=-0.019 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC-----CCCCCccchHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHccCCcCCHHHHHH
Q 014516 82 YKAAKHAFISALRQYKTPGNFS-----GKSQDDTLAIEVMIHSKALLLLSCDFATAWNSR--KLIVSNKRLLPILMDELH 154 (423)
Q Consensus 82 Y~~A~~~f~~~l~~y~~~~~~~-----~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~R--k~lL~~~~~~~~~~~EL~ 154 (423)
|..|...|.++++........+ .-. .....++++...++++ +|++....-.+ ..+....+ .+.+++.
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g---dyd~Aie 123 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK---RWDQALA 123 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Confidence 4577777777776443321110 000 1133578888888888 66666665555 44555554 7899999
Q ss_pred HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS 234 (423)
Q Consensus 155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (423)
++..++..+|+++.++..- ++..... .-..+.+..+.++...+|.|... --+..+...... ..++++..
T Consensus 124 ly~kaL~~dP~n~~~l~gL--a~~y~~~------~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~--~~~AL~~~ 192 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGM--IMTQADA------GRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR--NYDALQAS 192 (822)
T ss_pred HHHHHHhhCCCCHHHHHHH--HHHHhhc------CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch--HHHHHHHH
Confidence 9999999999999999633 2222211 12678999999999999997776 666666654333 44599999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHh
Q 014516 235 RNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 235 ~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
++++..+|.|.....-+...+.++
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999999987777777664
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.34 Score=50.39 Aligned_cols=135 Identities=13% Similarity=0.013 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
...+.+..++..+|+.||+...+|.--+-=.-.+.+ -..+++...+|++.+|+.|.||.--+.....|.-
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-- 413 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-- 413 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--
Confidence 457888999999999999999999754433333332 3678899999999999999999987777766643
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr 306 (423)
-.-.|-+..+.+..-|.|---|.-.+-...++. ..++++.+.+.+|...--+-++-.+..
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~--------------------~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLN--------------------RLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHhccccchHHHHHHH
Confidence 567899999999999999999988887776652 367889999999987777778888877
Q ss_pred HHHHH
Q 014516 307 FLSMY 311 (423)
Q Consensus 307 ~Ll~~ 311 (423)
.|...
T Consensus 474 kLye~ 478 (559)
T KOG1155|consen 474 KLYEE 478 (559)
T ss_pred HHHHH
Confidence 77665
No 62
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.22 E-value=0.069 Score=40.06 Aligned_cols=85 Identities=18% Similarity=0.069 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|..+..++...+ ..++.+..+..++..+|++..+|.....+....+. +
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 84 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLG---KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK--------Y 84 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh--------H
Confidence 467888899999999999999999999888764 68899999999999999999888888777766554 5
Q ss_pred HHHHHHHHHHHHhcCC
Q 014516 192 ERESELVEKIAERSKM 207 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pk 207 (423)
......+..+++.+|.
T Consensus 85 ~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 85 EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHccCCC
Confidence 6677778888877763
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.20 E-value=0.36 Score=48.08 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~ 242 (423)
+.+....+.++++.+|.+-+++....-++...+. +++.+.++.+++...+
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHhhhhccC
Confidence 3444555555555555554444444444433322 4444555555555443
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.19 E-value=0.46 Score=47.31 Aligned_cols=133 Identities=10% Similarity=-0.065 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 116 MIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 116 L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
......+...+|.+ ......|..+....+ +..+.+.++..++..+|++..+|.. ......++..... ..
T Consensus 26 ~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~----~~ 97 (355)
T cd05804 26 AAKAAAAAQALAARATERERAHVEALSAWIAG---DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGM----RD 97 (355)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccC----ch
Confidence 44455555555544 556666666666554 7899999999999999999999886 4444333322111 12
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
.....+......+|...++.....+++...+. +.+.+..+.+.+..+|.|..+++....++...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~--~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ--YDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 22233333556777777787777888877665 78889999999999999999999998887664
No 65
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.07 E-value=0.086 Score=47.52 Aligned_cols=115 Identities=8% Similarity=-0.039 Sum_probs=83.1
Q ss_pred HHHHHhCCCcHHH--HHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHH
Q 014516 120 KALLLLSCDFATA--WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERE 194 (423)
Q Consensus 120 ~~lLl~nPe~~Ta--Wn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~E 194 (423)
..++.++++...+ +..++.+....+ ++++++..+..++..+|+.. .+|.....++..++. ++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A 91 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADG---EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------HDKA 91 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------HHHH
Confidence 4444445544444 455666666554 78999999999998877653 567777777766655 6888
Q ss_pred HHHHHHHHHhcCCCchhchHHHHHHHhcChh------------hHHHHHHHHHHHHhccCCCh
Q 014516 195 SELVEKIAERSKMNYRAWNHRCWLVSFMTRE------------QVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------------~~~~EL~~~~k~i~~d~~N~ 245 (423)
+..+.+++..+|.+..++...+++....+.. .+...++...+.+..+|.|+
T Consensus 92 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 92 LEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 8999999999999999999998888766531 24556777777777777773
No 66
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.038 Score=57.93 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..+.++..++++|..||++.++...|..+...++ .+...|.-+...+..+|.+...|....-++..+..
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-------- 441 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG---EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-------- 441 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--------
Confidence 3577888888899999999999999999999986 78899999999999999999999999988888766
Q ss_pred HHHHHHHHHHHHHhcCCCchhc
Q 014516 191 IERESELVEKIAERSKMNYRAW 212 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW 212 (423)
+.+.++.+..+++.||.|--+=
T Consensus 442 ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHhcCchhHHHH
Confidence 7899999999999999875443
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.00 E-value=0.13 Score=42.25 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccC
Q 014516 112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCS 185 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~ 185 (423)
.+++++.+..++..+|++ .+++..+..++...+ .+.+++..+..++..+|.+ ..+|....+++.++..
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--- 91 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD--- 91 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC---
Confidence 478999999999999987 578888999888875 7899999999999999886 5678888888877655
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516 186 TLQWIIERESELVEKIAERSKMNY 209 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY 209 (423)
+...+..+..+++.+|.+-
T Consensus 92 -----~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 92 -----KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred -----hHHHHHHHHHHHHHCcCCh
Confidence 6788899999999999864
No 68
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.22 Score=48.17 Aligned_cols=137 Identities=11% Similarity=-0.050 Sum_probs=104.3
Q ss_pred ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516 109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-SNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL-~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~ 187 (423)
....+++++.++.+|.-||-|..+-- ||..+ .+.| .-.+.++-+...|..+|....+|..-..+....+.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~K-RKlAilka~G---K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~----- 169 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRK-RKLAILKAQG---KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD----- 169 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHH-HHHHHHHHcC---CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH-----
Confidence 45678999999999999998876655 66544 4444 33488999999999999999999999888876654
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc-ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM-TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~-~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
+..+.-|.+.++-..|-|+-...--.=++-.+ +.+..+....+..+.++.++.|+.+|.-....-..
T Consensus 170 ---f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 170 ---FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred ---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 78888899999999999876543322222222 23456777899999999999999999776544433
No 69
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.96 E-value=0.034 Score=41.42 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
++++++..+..++..+|+++.+|.....++...+. +.+.+....++++.+|.|
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR--------YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777777776654 566667777777777765
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.94 E-value=0.33 Score=51.57 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+++.+++.+.||..+|.||..|+--+-.+.+-. ...+.++.+.+++++-|.-.-+|.....-.-.+
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl------------ 511 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQLQPGYVRVRYNLGISCMNL------------ 511 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh------------
Confidence 566667777777777777777766555554432 256677777777777777766666665443332
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCC----------CccHHHHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVG----------REALWLHRRFLS 309 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~----------neSaW~yrr~Ll 309 (423)
..+++.+.+.-.+|.+.+. ++.+|-++|..+
T Consensus 512 --------G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~al 552 (579)
T KOG1125|consen 512 --------GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLAL 552 (579)
T ss_pred --------hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHH
Confidence 3578888888888877665 345999999444
No 71
>PRK11906 transcriptional regulator; Provisional
Probab=95.74 E-value=0.37 Score=50.31 Aligned_cols=155 Identities=7% Similarity=-0.052 Sum_probs=118.4
Q ss_pred HhCCCcH---HHH----HHHHHHHHccCCcCCHHHHHHHHHHHH---HhCCCchhHhHHHHHHHHHhhhc-cChhHHhHH
Q 014516 124 LLSCDFA---TAW----NSRKLIVSNKRLLPILMDELHLSALVL---SYSPKSEQAWSHRRWVINMISRN-CSTLQWIIE 192 (423)
Q Consensus 124 l~nPe~~---TaW----n~Rk~lL~~~~~~~~~~~EL~~~~~lL---~~nPK~y~~W~hRrwll~~l~~~-~~~~~~~~~ 192 (423)
..-|++. .+| ..|++-....+.......++.++..++ ..+|.+..++..+.|+--..... ..+......
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3447888 888 345543322222356788999999999 89999999999999987665221 122344567
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCC
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSG 272 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~ 272 (423)
+.+.+..++++.||.|-.|=...+.++-..+. ....+...++.+.++|+.-.+|.|+.++..-..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~--~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G------------- 386 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQ--AKVSHILFEQAKIHSTDIASLYYYRALVHFHNE------------- 386 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc--hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC-------------
Confidence 88899999999999999988887777766554 778899999999999999999999999876531
Q ss_pred chhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 273 YFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 273 ~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
-.++.++.+.++++.+|..-.
T Consensus 387 -------~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 387 -------KIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred -------CHHHHHHHHHHHhccCchhhH
Confidence 257788999999999997543
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.73 E-value=0.23 Score=55.07 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (423)
+++++..++..++..+|+++.+|..-.-|.++.+. .++-+.+-..|+-.+|+++--|.+-.=+..+++. +
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--------~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~--i 223 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--------IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN--I 223 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--H
Confidence 78999999999999999999999999999998876 6888899999999999999999887666666544 8
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
..+.-+..++|+.+|.|.-----|..|..++
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKT 254 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 8999999999999999965444455566554
No 73
>PRK11906 transcriptional regulator; Provisional
Probab=95.72 E-value=0.21 Score=52.11 Aligned_cols=129 Identities=9% Similarity=-0.074 Sum_probs=101.9
Q ss_pred ccchHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHcc-----C-CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHH
Q 014516 109 DTLAIEVMIHSKALL---LLSCDFATAWNSRKLIVSNK-----R-LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINM 179 (423)
Q Consensus 109 ~~~~~~~L~~t~~lL---l~nPe~~TaWn~Rk~lL~~~-----~-~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~ 179 (423)
.+....++.+...++ .++|++..++-.+..+-... . ......+.+++...++..+|.++.+=.....++..
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345678889999999 99999998777766654332 1 13456778999999999999999886666655554
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH
Q 014516 180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC 247 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa 247 (423)
... +...+...++++..+|..-.+|.+++|+....+. .++.++.+++.++++|.---+
T Consensus 351 ~~~--------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 351 SGQ--------AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcc--------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCchhhHH
Confidence 433 5778889999999999999999999999887665 788999999999999965444
No 74
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.69 E-value=0.25 Score=44.40 Aligned_cols=99 Identities=12% Similarity=-0.029 Sum_probs=84.7
Q ss_pred ceEeecccccch-----hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHH
Q 014516 63 SFWIRDHKLGIS-----TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRK 137 (423)
Q Consensus 63 p~~~~~~~Lgi~-----~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk 137 (423)
.|+..|.+|++- ...+-.+|..|...+.. ...+++...+..+..++|.+...|..-+
T Consensus 15 ~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~------------------G~l~~A~~~f~~L~~~Dp~~~~y~~gLG 76 (157)
T PRK15363 15 RFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEV------------------KEFAGAARLFQLLTIYDAWSFDYWFRLG 76 (157)
T ss_pred HHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 477788887654 55667799999654322 3358899999999999999999999999
Q ss_pred HHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh
Q 014516 138 LIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR 182 (423)
Q Consensus 138 ~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~ 182 (423)
.+.+..+ .+.+++.....++..+|++|..-.|-..++..+++
T Consensus 77 ~~~Q~~g---~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 77 ECCQAQK---HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHh---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 9999986 89999999999999999999999999999998876
No 75
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.68 E-value=0.048 Score=41.45 Aligned_cols=58 Identities=19% Similarity=0.069 Sum_probs=52.6
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHh
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAW 170 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W 170 (423)
...+++++..+.++.++|++..+|..|+.++...+ .+.+++..++.++..+|+..++=
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHHH
Confidence 44688999999999999999999999999999986 89999999999999999877653
No 76
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.75 Score=47.95 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+.++.....+|.+||....||-.-+-=...+ +.-..++.....++..||..|-+|.--+.....+.- .
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm---KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--------h 414 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM---KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--------H 414 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh---cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--------h
Confidence 47788999999999999999998766433333 355788999999999999999999987776665543 4
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
.-.|-+..++++.-|..-..|.--+-+...++. .++++...++.+...-.|-+|..+...+-.++
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 678899999999999888888877777777765 78899999999998888889988888877775
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.65 E-value=0.039 Score=41.10 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE 167 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y 167 (423)
.++++..++.++..+|++..+|...+.++...+ .+.+++..+..++..+|.++
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCC
Confidence 588999999999999999999999999999876 89999999999999999875
No 78
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.56 E-value=0.12 Score=46.62 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC--
Q 014516 111 LAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS-- 185 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~-- 185 (423)
..++++..+..++.++|+. ..+|.....+....+ .+++.+..+..++..+|++...+.....++..++....
T Consensus 50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG---EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence 3578899999999887764 468888888888875 78999999999999999999999999988877654211
Q ss_pred ----hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516 186 ----TLQWIIERESELVEKIAERSKMNY 209 (423)
Q Consensus 186 ----~~~~~~~~EL~~~~~~l~~~pkNY 209 (423)
.....+...+++..+++..+|.||
T Consensus 127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 127 GDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 122346788899999999999985
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.53 E-value=0.2 Score=54.74 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+++.-+...+=.+.|....+|+.|++++...+ ...++...+..+|..+|....+=.--.-++...+... +
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~---~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~------l 736 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKG---QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR------L 736 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH---hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc------h
Confidence 456666777777788888888888888777654 6788899999999999999888887777777777432 3
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
...-.+...+++.||.|--||.+-+-++...+. ....-+.+...+.++++|
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--SKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--hHHHHHHHHHHHhhccCC
Confidence 344457888899999999999998888888775 566677777777666654
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.48 E-value=0.17 Score=54.41 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
...|+....+|.-.|+|..---.++..|..++ ..+++...+...++.+++|+-.|+--+-+...- .-+.
T Consensus 24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg---~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--------K~Y~ 92 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLG---KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--------KKYD 92 (700)
T ss_pred HhHHHHHHHHHHhCCccchhHHhccchhhccc---chHHHHHHHHHHhccCcccchhHHHHHHHHhhh--------hhHH
Confidence 56788999999999999999999999998886 678999999999999999999998666544332 2378
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (423)
+.+.+...|+..+|.|-..|.--..+-.+|.
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999988777776664
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.44 E-value=0.35 Score=46.12 Aligned_cols=124 Identities=8% Similarity=-0.119 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
...+.+..+++|..+|.+|-+|..|..+.+..+ ..+.+-+...++|+.+|++-.+-|.=+|.|-..+. +
T Consensus 51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~--------~ 119 (250)
T COG3063 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR--------P 119 (250)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--------h
Confidence 466778899999999999999999999999987 56777888899999999999999988888776654 5
Q ss_pred HHHHHHHHHHHH--hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516 192 ERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF 248 (423)
Q Consensus 192 ~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW 248 (423)
++.+...++++. .+|--+-.|..-+||--+++. ....-++.++.+..||.+-.+-
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHHHHHHhCcCCChHH
Confidence 677777777776 356666789999999877665 5667788999999999887763
No 82
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.39 E-value=0.47 Score=38.73 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=75.1
Q ss_pred HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC---
Q 014516 135 SRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN--- 208 (423)
Q Consensus 135 ~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN--- 208 (423)
.....+... ..+.+++..+..++..+|++ .+++.....++...+. +...+..+..++..+|.+
T Consensus 7 ~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 7 DAALLVLKA---GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------YADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHCCCCCcc
Confidence 334444444 37899999999999999987 4566666666665554 688999999999999986
Q ss_pred chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516 209 YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS 246 (423)
Q Consensus 209 Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S 246 (423)
-.+|...++++..++. ..+.+..+.+.+..+|.+--
T Consensus 76 ~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 76 PDALLKLGMSLQELGD--KEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred cHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHCcCChh
Confidence 3467777778776654 77888999999999988753
No 83
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.39 E-value=0.9 Score=48.70 Aligned_cols=154 Identities=8% Similarity=-0.096 Sum_probs=100.8
Q ss_pred HhCCCcHHHHHH--HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHH
Q 014516 124 LLSCDFATAWNS--RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI 201 (423)
Q Consensus 124 l~nPe~~TaWn~--Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~ 201 (423)
..-|.+.+||.. |++-............++.+++.++..+|.+..+|..+.++..............+........++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345777788874 554333322234578999999999999999999999887765433222211111233444445555
Q ss_pred HHh--cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHH
Q 014516 202 AER--SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQ 279 (423)
Q Consensus 202 l~~--~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 279 (423)
+.. +|..- ..|...-+..+....+++.....++.+.++|+ .-+|.++..+.....
T Consensus 411 ~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G-------------------- 467 (517)
T PRK10153 411 VALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKG-------------------- 467 (517)
T ss_pred hhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC--------------------
Confidence 553 55443 34444433333334688999999999999994 567777776655421
Q ss_pred HHHHHHHHHHHHHhhcCCCcc
Q 014516 280 IWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 280 ~~~eEL~~~~~~I~~~p~neS 300 (423)
..++.++...++++++|+++.
T Consensus 468 ~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 DNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHhcCCCCch
Confidence 267889999999999999985
No 84
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.21 E-value=0.086 Score=54.84 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=65.8
Q ss_pred hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH---hHHHHHHHHHhhhccChhHHhHHHHHHHHHHH
Q 014516 125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA---WSHRRWVINMISRNCSTLQWIIERESELVEKI 201 (423)
Q Consensus 125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~---W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~ 201 (423)
.+|+++.+|+.++..+...+ ++++++..++.+|..+|.+..+ |+.+..++.+++. .++.++.+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--------~dEAla~LrrA 138 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG---RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--------GKKAADCLRTA 138 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence 69999999999999999886 8999999999999999999865 9999999999876 68899999999
Q ss_pred HHhcCCCc
Q 014516 202 AERSKMNY 209 (423)
Q Consensus 202 l~~~pkNY 209 (423)
++.++..|
T Consensus 139 Lelsn~~f 146 (453)
T PLN03098 139 LRDYNLKF 146 (453)
T ss_pred HHhcchhH
Confidence 99844334
No 85
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.14 E-value=0.13 Score=39.08 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY 209 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY 209 (423)
.++++.+..++.++..+|.++.+|..+..++...+. +...+..++++++..|.+-
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--------~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGR--------YEEALEDLERALELSPDDP 63 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc--------HHHHHHHHHHHHHHCCCcH
Confidence 478999999999999999999999999999998876 7899999999999999653
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.07 E-value=0.21 Score=52.90 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+++++|++.+|..+|.+|+.||--+-.|-+.. ...+++.-...+|...|.+.-+|+.-.-.--.++. +
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~--------y 514 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA--------Y 514 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh--------H
Confidence 588999999999999999999999999998874 67999999999999999999999887765555554 7
Q ss_pred HHHHHHHHHHHHhcCCCc----------hhchHHHHHHHhcChhh
Q 014516 192 ERESELVEKIAERSKMNY----------RAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY----------~AW~hR~wll~~~~~~~ 226 (423)
.+.....-.+|...++++ .+|..-+-++..|...+
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 888888888888888833 37888777776666543
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.97 E-value=1.7 Score=43.93 Aligned_cols=166 Identities=12% Similarity=0.034 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------------hHhHHHHHHHH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------------QAWSHRRWVIN 178 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------------~~W~hRrwll~ 178 (423)
+..+|.-.+.+|.+-|+++.|=.-|+-++...+ .++++..=++.+|..+|.+- +-|+-|..+.+
T Consensus 88 sk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G---ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 88 SKAALQDLSRVLELKPDFMAARIQRGVVLLKQG---ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred CccchhhHHHHHhcCccHHHHHHHhchhhhhcc---cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 455777788999999999999999999998876 68888888999999999543 33444444443
Q ss_pred HhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
-.... .....++++..+++..|=.-....+|.=++-.-+. ....+..+...-++-..|..+..--..|+-.+
T Consensus 165 ~~~~G------D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e--~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 165 ASGSG------DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE--PKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HhcCC------chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc--HHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 33221 26788999999999999776666677655544332 45566666666666666666655455555443
Q ss_pred hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 259 LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
. -.+.-|.-+...+..||+|-+..-+...|
T Consensus 237 g--------------------d~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 237 G--------------------DAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred h--------------------hHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 1 13445566677788889988887665543
No 88
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.78 E-value=1.5 Score=46.01 Aligned_cols=119 Identities=8% Similarity=-0.086 Sum_probs=102.0
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
|.-..+|.-+...-...+ .+++++..++.++...|+|+..|..+..++....+ ..+.++...+++..+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~---~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------~~~A~e~~~kal~l~P 371 (484)
T COG4783 303 RGGLAAQYGRALQTYLAG---QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------AKEAIERLKKALALDP 371 (484)
T ss_pred ccchHHHHHHHHHHHHhc---ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcCC
Confidence 677778877765544443 67899999999999999999999999999887766 5789999999999999
Q ss_pred CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
.++..|--..-.+-..+. ..+.+...+..+..+|.|--+|.|.......+
T Consensus 372 ~~~~l~~~~a~all~~g~--~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 372 NSPLLQLNLAQALLKGGK--PQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL 421 (484)
T ss_pred CccHHHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 999999888888877766 45889999999999999999999998877765
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.72 E-value=2 Score=44.30 Aligned_cols=174 Identities=7% Similarity=-0.202 Sum_probs=114.0
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhC---CCch-----hHhHHHH-------
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYS---PKSE-----QAWSHRR------- 174 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~n---PK~y-----~~W~hRr------- 174 (423)
...+.++...+.++..+|++..+...-..+....+ ++++.+..+..+++.. |..+ .+|...-
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~---d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG---AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678889999999999999999888888777764 6777777777777653 3333 2232211
Q ss_pred --HHHHHhhhccC-----h------------hHHhHHHHHHHHHHHHHhcCCCchhc--hHHHHHHHhcChhhHHHHHHH
Q 014516 175 --WVINMISRNCS-----T------------LQWIIERESELVEKIAERSKMNYRAW--NHRCWLVSFMTREQVLDELKK 233 (423)
Q Consensus 175 --wll~~l~~~~~-----~------------~~~~~~~EL~~~~~~l~~~pkNY~AW--~hR~wll~~~~~~~~~~EL~~ 233 (423)
-.+.......+ + .....+..+..+.++++.+|.+.... ..+... .+.......-++.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hcCCCChHHHHHH
Confidence 01111111000 0 01225788899999999999986543 222222 2222345667899
Q ss_pred HHHHHhccCCCh--hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHH--HHHhhcCCCccHHHHHHHHH
Q 014516 234 SRNWSGLHVADN--SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNE--SLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 234 ~~k~i~~d~~N~--SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~--~~I~~~p~neSaW~yrr~Ll 309 (423)
+++|++.+|.|. .......++..+.. .+.+..++.+ .++..+|+++... +...++
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~--------------------~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll 380 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHG--------------------EFIEAADAFKNVAACKEQLDANDLA-MAADAF 380 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHH
Confidence 999999999999 76777777776531 3778888888 5778899998866 434443
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.71 E-value=1.1 Score=49.19 Aligned_cols=138 Identities=7% Similarity=-0.009 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR 210 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~ 210 (423)
..|-.+..+....+ .-.++.-++..+-...|-+..+|+-|+-++...+. +.+..+....++..||....
T Consensus 651 ~lwllaa~~~~~~~---~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~--------~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 651 KLWLLAADLFLLSG---NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ--------LEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHHHHHhcC---CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh--------hHHHHHHHHHHHhcCCCCcH
Confidence 35555555544443 34667777888888899999999999877766554 78899999999999999888
Q ss_pred hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHH
Q 014516 211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNES 290 (423)
Q Consensus 211 AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~ 290 (423)
+=+--+=++...+.+....--.....+++.||.|..+|.|.+.++.+... .++..++.+.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--------------------~~~Aaecf~a 779 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--------------------SKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------------------hHHHHHHHHH
Confidence 77776666666665444444457788999999999999999999987521 4567778888
Q ss_pred HHhhcCCCc
Q 014516 291 LIKQYVGRE 299 (423)
Q Consensus 291 ~I~~~p~ne 299 (423)
++...+++.
T Consensus 780 a~qLe~S~P 788 (799)
T KOG4162|consen 780 ALQLEESNP 788 (799)
T ss_pred HHhhccCCC
Confidence 888777664
No 91
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.65 E-value=3.5 Score=44.90 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=110.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-------------------------------CcCCHHHHHHHHHHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-------------------------------LLPILMDELHLSALV 159 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-------------------------------~~~~~~~EL~~~~~l 159 (423)
-.++++++.+.+|..-|++.-.|-..+++....+ ....+.++-..++..
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4588999999999999999999999999987753 011344555566666
Q ss_pred HHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh---------------
Q 014516 160 LSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------------- 224 (423)
Q Consensus 160 L~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------------- 224 (423)
..+|||+.-+|--.--+=.+.+. .+..-.++.++|+.-|+|--.|.-..|+..+-.+
T Consensus 746 rlkNPk~~~lwle~Ir~ElR~gn--------~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp 817 (913)
T KOG0495|consen 746 RLKNPKNALLWLESIRMELRAGN--------KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP 817 (913)
T ss_pred HhcCCCcchhHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence 66777777777533222222222 3444468899999999999999999998654321
Q ss_pred -------------hhHHHHHHHHHHHHhccCCChhHHH--HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHH
Q 014516 225 -------------EQVLDELKKSRNWSGLHVADNSCFH--YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNE 289 (423)
Q Consensus 225 -------------~~~~~EL~~~~k~i~~d~~N~SaW~--yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~ 289 (423)
..++...+.+.+.++.||+|-.+|. |+..+...-. ++--+..+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e----------------------ed~kev~~ 875 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE----------------------EDQKEVLK 875 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH----------------------HHHHHHHH
Confidence 1245567777788888887766554 4444333210 11122345
Q ss_pred HHHhhcCCCccHHHHHHHHH
Q 014516 290 SLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 290 ~~I~~~p~neSaW~yrr~Ll 309 (423)
+.....|.|--.|.--+.-+
T Consensus 876 ~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 876 KCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred HHhccCCCCCcHHHHHhhhH
Confidence 55666798888887755444
No 92
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.52 E-value=0.82 Score=40.82 Aligned_cols=105 Identities=8% Similarity=-0.031 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
..+|+....+....+ .+++++..+..++...|+++ .+|.....+....+. .++.+.++.+++..+|
T Consensus 35 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 35 AFTYYRDGMSAQSEG---EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------HTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCc
Confidence 455666666666554 67888888888887776643 366666666666554 5778888888888888
Q ss_pred CCchhchHHHHHHHhcChh------------hHHHHHHHHHHHHhccCCCh
Q 014516 207 MNYRAWNHRCWLVSFMTRE------------QVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 207 kNY~AW~hR~wll~~~~~~------------~~~~EL~~~~k~i~~d~~N~ 245 (423)
.+-.+|.....+....+.. .+.+.+....+.+..+|.++
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8888888887777644320 12344555555666666554
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.39 E-value=0.5 Score=42.21 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc----
Q 014516 111 LAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRN---- 183 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~---- 183 (423)
..++++..+..++.+.|++ .++|...+.+....+ ..++++..+..++..+|.....|.....+...+...
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~ 126 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG---EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ 126 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence 4578999999999888774 458888888888875 789999999999999999999999999888855421
Q ss_pred cC--hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516 184 CS--TLQWIIERESELVEKIAERSKMNY 209 (423)
Q Consensus 184 ~~--~~~~~~~~EL~~~~~~l~~~pkNY 209 (423)
+. .....+.+.+.+..+++..+|.++
T Consensus 127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 127 GDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 11 112346677888899999999876
No 94
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.28 E-value=7.2 Score=44.18 Aligned_cols=213 Identities=11% Similarity=-0.022 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC--C--CC-CCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHH
Q 014516 81 VYKAAKHAFISALRQYKTPGNFS--G--KS-QDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHL 155 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~~--~--~~-~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~ 155 (423)
-|+.|...|..++..-......+ . -+ ....+.+.++.+...+|.+||.+..+--.-..+-....+...+...+.+
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 47777777777665322221111 0 00 0233567899999999999998888777666655554444568889999
Q ss_pred HHHHHHhCCCchhHhHHHHHHHHH-------------hhhcc-C-h--------------hHHhHHHHHHHHHHHHHhcC
Q 014516 156 SALVLSYSPKSEQAWSHRRWVINM-------------ISRNC-S-T--------------LQWIIERESELVEKIAERSK 206 (423)
Q Consensus 156 ~~~lL~~nPK~y~~W~hRrwll~~-------------l~~~~-~-~--------------~~~~~~~EL~~~~~~l~~~p 206 (423)
+..+.+.||+||.+-+|-.--+-. ..... . . ....++........++..+|
T Consensus 259 l~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 259 LQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 999999999999998875421110 00000 0 0 12336788889999999999
Q ss_pred CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHH
Q 014516 207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELD 286 (423)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~ 286 (423)
.| +...|-+..--++...+++......++.+...|+|+-...-.+.|..... ......+...+
T Consensus 339 d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~----------------~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 339 DN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA----------------KKQEKRDKASN 401 (1018)
T ss_pred CC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh----------------hhhHHHHHHHH
Confidence 88 33333332222222334667778889999999999988766665544321 01124566777
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHH
Q 014516 287 WNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 287 ~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
+..+.....|.|.-+|.-+..|+.
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHH
Confidence 788888888999999988887664
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.15 E-value=0.47 Score=51.10 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
..+..-|.+...+|+++|+....-.-.+-.|-.++. -++...+|...+..|++++-||+-=+.+.+.- ..
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~ 90 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--KK 90 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------hHHHHHHHHHHhccCcccchhHHHHHHHHhhh--hh
Confidence 468899999999999999999999999888888776 47888999999999999999998766665442 35
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL 259 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~ 259 (423)
+.+.+.....++..++.|-+-|.-...|-.+|.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998877774
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.10 E-value=1.4 Score=39.62 Aligned_cols=105 Identities=10% Similarity=-0.091 Sum_probs=80.2
Q ss_pred HhC-CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHH
Q 014516 124 LLS-CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIA 202 (423)
Q Consensus 124 l~n-Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l 202 (423)
.+. ++....-.-..-.+...+ +++++..++..+...+|.++.-|..-.-+.+.++. +.+.+.+..+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G---~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~--------~~~AI~aY~~A~ 96 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVK---EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH--------WGEAIYAYGRAA 96 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHH
Confidence 444 444444444455555554 79999999999999999999999999999988876 899999999999
Q ss_pred HhcCCCchhchHHHHHHHhcChh-hHHHHHHHHHHHHh
Q 014516 203 ERSKMNYRAWNHRCWLVSFMTRE-QVLDELKKSRNWSG 239 (423)
Q Consensus 203 ~~~pkNY~AW~hR~wll~~~~~~-~~~~EL~~~~k~i~ 239 (423)
..+|.++.+-.|.+-+.-.++.. .-.+-+..+-.|+.
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998777651 12233444444443
No 97
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.04 E-value=0.47 Score=44.50 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHhCCCchh-----HhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHh
Q 014516 147 PILMDELHLSALVLSYSPKSEQ-----AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF 221 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~ 221 (423)
.+++++..-+..+|...|..++ ++..|.-++-++.. ++..+.-|.++++++|.+-.|---|..+..+
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------WESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------HHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3688889999999999888876 23333333333333 8899999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHhccCCChhH
Q 014516 222 MTREQVLDELKKSRNWSGLHVADNSC 247 (423)
Q Consensus 222 ~~~~~~~~EL~~~~k~i~~d~~N~Sa 247 (423)
+.. +++.|+.+++.++.||++.-|
T Consensus 181 ~ek--~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 181 MEK--YEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhh--HHHHHHHHHHHHHhCcchHHH
Confidence 855 889999999999999998743
No 98
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.03 E-value=0.23 Score=36.99 Aligned_cols=59 Identities=12% Similarity=-0.106 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH 172 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h 172 (423)
..+++++.+..++..+|++..++.....++...+ .++++...+..++..+|+++.+|.-
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3578999999999999999999999999999886 7999999999999999998776653
No 99
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.01 E-value=1.4 Score=43.11 Aligned_cols=89 Identities=12% Similarity=0.002 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC---chhHhHHHHHHHHHhhhccC
Q 014516 112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK---SEQAWSHRRWVINMISRNCS 185 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK---~y~~W~hRrwll~~l~~~~~ 185 (423)
.++++..+..++...|+. ..++.+.+.+....+ ++++++..+..++..+|+ .+.+|.....+...++.
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g---~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~--- 232 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG---KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD--- 232 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC---
Confidence 478999999999999998 478888999888775 789999999999987776 46777777777766544
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516 186 TLQWIIERESELVEKIAERSKMNYRA 211 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~A 211 (423)
.......+.++++.+|.+-.|
T Consensus 233 -----~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 233 -----TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----HHHHHHHHHHHHHHCcCCHHH
Confidence 688889999999999987654
No 100
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.98 E-value=10 Score=43.08 Aligned_cols=203 Identities=9% Similarity=-0.068 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc--cC-hhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRN--CS-TLQ 188 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~--~~-~~~ 188 (423)
..++..+...+|.+|..+.+||.+=+.+-.........++-.....+-...+|+.|.+=.-=-..++.+.+. .+ .-.
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 466777888888888888888888775443332011111112222222223355555443222333333321 12 223
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc------
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF------ 262 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~------ 262 (423)
....+++++..++|+.||||-||=+=-+-|+..-+. +...++-+.+..+.-..+..+|-....++.-....+
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~--~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR--FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC--chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999998888888766543 334444433333333344445544444433221100
Q ss_pred --cccC---CCCCC-----CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q 014516 263 --CYTQ---DNNSS-----GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHM 316 (423)
Q Consensus 263 --~~~~---~~~~~-----~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~ 316 (423)
|... .+.+. +..-.....+.+..++...++...|+|.++=+++..++..+....
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 0000 00000 000001234778889999999999999999988888776654433
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.97 E-value=0.88 Score=51.59 Aligned_cols=131 Identities=7% Similarity=-0.204 Sum_probs=98.2
Q ss_pred HHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh----h------HHhH
Q 014516 122 LLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST----L------QWII 191 (423)
Q Consensus 122 lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~----~------~~~~ 191 (423)
+...+|.+..+|-.=-...... ..+++.+..++..+..+|+...+|.+-+.+..+....... + ..-+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~ 99 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW 99 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch
Confidence 3456777887776554444333 4789999999999999999999999999976655443210 0 0012
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
.-.+.+..++..++.|-+|-...+-+..+++. ..+.++..++.++.||.|..+-++..+.+...
T Consensus 100 -~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 100 -AIVEHICDKILLYGENKLALRTLAEAYAKLNE--NKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 33455555566678787898889999988876 78889999999999999999999999887753
No 102
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.63 E-value=2.1 Score=40.93 Aligned_cols=126 Identities=8% Similarity=-0.081 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
.+...+..-++++|..+|++|-+|.-|..+.++++. .+..-+-..+++..+|+|=.+=+.=+|.+...+.
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~-- 118 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR-- 118 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--
Confidence 368889999999999999999999999999999876 3556678899999999998888887777766554
Q ss_pred HHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHH
Q 014516 227 VLDELKKSRNWSGL--HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALW 302 (423)
Q Consensus 227 ~~~EL~~~~k~i~~--d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW 302 (423)
+++.+..+++.+.. -+.=.-.|-....+-.+.. -.+..-++.++.++.+|++..+-
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g--------------------q~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAG--------------------QFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC--------------------CchhHHHHHHHHHHhCcCCChHH
Confidence 67788888887752 1222234444444433321 13455677888999999988753
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=7.8 Score=37.74 Aligned_cols=164 Identities=6% Similarity=-0.069 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
..-+-.++..+-.--|..+-+=-....++++.+ ..+++++..+.+|..+|-+..+.- |+-.+.+-... -
T Consensus 68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~---~~~~A~e~y~~lL~ddpt~~v~~K-RKlAilka~GK-------~ 136 (289)
T KOG3060|consen 68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG---NYKEAIEYYESLLEDDPTDTVIRK-RKLAILKAQGK-------N 136 (289)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh---chhhHHHHHHHHhccCcchhHHHH-HHHHHHHHcCC-------c
Confidence 456777888877777999999999999999886 789999999999999998776655 55555443221 1
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS 271 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~ 271 (423)
.+.+.-+..-++..+..--||.+-.=+.-.++ +++...-..+.++-..|-|+-.+.-..-++.-+.+
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~--~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg----------- 203 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEG--DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG----------- 203 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-----------
Confidence 36777888889999999999988766654443 47888888899999999887665444444443311
Q ss_pred CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 272 GYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
.+.+.-...|..+++..+|.|.-+|+-.
T Consensus 204 ------~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 204 ------AENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred ------HHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 1245566788899999999888888753
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.44 E-value=3.3 Score=43.46 Aligned_cols=102 Identities=8% Similarity=-0.019 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++..+..++..-|+|...|-.+..++...+ ...++++....++...|.++.+|.-....+.+.++ .
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~--------~ 390 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN---KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK--------P 390 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC--------h
Confidence 477889999999999999999999999998875 78999999999999999999999999998888876 4
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (423)
.+.+..+...+..+|.+-..|.+=.-.....+.
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 688899999999999999999997666666553
No 105
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.41 E-value=2.3 Score=45.68 Aligned_cols=126 Identities=7% Similarity=-0.060 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc---CC--cCCHHHHHHHHHHHHHh--CCCchhHhHHHHHHHHHhhh
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK---RL--LPILMDELHLSALVLSY--SPKSEQAWSHRRWVINMISR 182 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~---~~--~~~~~~EL~~~~~lL~~--nPK~y~~W~hRrwll~~l~~ 182 (423)
.....++.+.+.++.++|++..||-.+..+-... .. ...+.........++.. .|-.+. .|....+..+..
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~--~~~ala~~~~~~ 433 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR--IYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH--HHHHHHHHHHhc
Confidence 3356888999999999999999888765533211 10 01123334444444443 444443 344444444333
Q ss_pred ccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516 183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS 246 (423)
Q Consensus 183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S 246 (423)
. -+++.....+++++.+| +.-+|...+.+....+. .++.++.+.+.+.++|.+..
T Consensus 434 g------~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 434 G------KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred C------CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCch
Confidence 1 27889999999999999 67888889988887776 78899999999999999874
No 106
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.32 E-value=0.31 Score=50.84 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=63.1
Q ss_pred hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc---hhchHHHHHHHhcChhhHHHHHHHHHHHH
Q 014516 162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY---RAWNHRCWLVSFMTREQVLDELKKSRNWS 238 (423)
Q Consensus 162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY---~AW~hR~wll~~~~~~~~~~EL~~~~k~i 238 (423)
.+|+++.+|+.+...+.+++. +++.+..++++++.+|.+. .+|+++..++..++. .++.++.+.+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr--------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--~dEAla~LrrAL 139 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR--------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--GKKAADCLRTAL 139 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Confidence 689999999999999988876 7999999999999999998 469999999999876 788899999999
Q ss_pred hcc
Q 014516 239 GLH 241 (423)
Q Consensus 239 ~~d 241 (423)
+..
T Consensus 140 els 142 (453)
T PLN03098 140 RDY 142 (453)
T ss_pred Hhc
Confidence 874
No 107
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.74 E-value=5.3 Score=41.20 Aligned_cols=129 Identities=8% Similarity=-0.191 Sum_probs=93.0
Q ss_pred HHHHHHHhCC----CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHH
Q 014516 118 HSKALLLLSC----DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIER 193 (423)
Q Consensus 118 ~t~~lLl~nP----e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (423)
....+....| +...++-.-...+...+ ..++++..+...+.++|++...... ++........ +....
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g---~~~~A~~~l~~~l~~~pd~~~~~~~---~l~~~~~l~~---~~~~~ 317 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCD---DHDSAQEIIFDGLKKLGDDRAISLP---LCLPIPRLKP---EDNEK 317 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCCcccchhH---HHHHhhhcCC---CChHH
Confidence 4445566677 46777777777776665 7899999999999999998765311 2222211110 11356
Q ss_pred HHHHHHHHHHhcCCCc--hhchHHHHHHHhcChhhHHHHHHHHH--HHHhccCCChhHHHHHHHHHHHh
Q 014516 194 ESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLDELKKSR--NWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 194 EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~--k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
-+..++++++.+|.|. ..-..-+|+.-+.+. |.+..++.+ ..+..+|++..+. +...++.++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~--~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~ 383 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE--FIEAADAFKNVAACKEQLDANDLA-MAADAFDQA 383 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc--HHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHc
Confidence 6889999999999999 777778999877655 899999999 6888999887765 666676664
No 108
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=1.4 Score=45.32 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=118.1
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh---ccCh
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR---NCST 186 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~---~~~~ 186 (423)
...+++...|-.+|.+++.+..+-..|+.++-... ............|+..|..+..=.-++-+ .++.. .+.+
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~---~~~ka~~hf~qal~ldpdh~~sk~~~~~~-k~le~~k~~gN~ 258 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND---NADKAINHFQQALRLDPDHQKSKSASMMP-KKLEVKKERGND 258 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhccccccccc---chHHHHHHHhhhhccChhhhhHHhHhhhH-HHHHHHHhhhhh
Confidence 35688999999999999999999999999998764 67888888999999888877654433321 11110 0000
Q ss_pred --hHHhHHHHHHHHHHHHHhcCCCc----hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhh
Q 014516 187 --LQWIIERESELVEKIAERSKMNY----RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLE 260 (423)
Q Consensus 187 --~~~~~~~EL~~~~~~l~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~ 260 (423)
...-+...-++...+|..||.|- +....|.-+..++++ ..+.+..|+..+++|++-.-|.+-|...-.-+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--l~eaisdc~~Al~iD~syikall~ra~c~l~l-- 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--LREAISDCNEALKIDSSYIKALLRRANCHLAL-- 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH--
Confidence 01235677789999999999864 456667777777766 78899999999999999888877666543322
Q ss_pred cccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516 261 GFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG 297 (423)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ 297 (423)
.-|++.+++.++++...-+
T Consensus 335 ------------------e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 335 ------------------EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ------------------HHHHHHHHHHHHHHhhccc
Confidence 3588888888888865433
No 109
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.49 E-value=14 Score=38.10 Aligned_cols=161 Identities=9% Similarity=-0.029 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhH-HHHHHH----HHh-hhcc
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWS-HRRWVI----NMI-SRNC 184 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~-hRrwll----~~l-~~~~ 184 (423)
..+.+++..+.++..+|+|..+......+....+ +.++.+.++..+.+..+.+..... .++... ... ...+
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g---dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG---AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466777777778888888777777776666554 667777777777766655444333 111221 100 0000
Q ss_pred ----------------Ch------------hHHhHHHHHHHHHHHHHhcCCCchhchHHHH-HHHhcChhhHHHHHHHHH
Q 014516 185 ----------------ST------------LQWIIERESELVEKIAERSKMNYRAWNHRCW-LVSFMTREQVLDELKKSR 235 (423)
Q Consensus 185 ----------------~~------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~w-ll~~~~~~~~~~EL~~~~ 235 (423)
.+ .....+.....+.++++..| +.+-. +...+......+.++.++
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~------~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY------DERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CHHHHHHHhhccCCChHHHHHHHH
Confidence 00 00113455566666666333 23322 222232345677899999
Q ss_pred HHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 236 NWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 236 k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
+|++.||.|.........+..+. ..|.+..++...++...|++..
T Consensus 319 ~~lk~~P~~~~l~l~lgrl~~~~--------------------~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 319 QQIKQHGDTPLLWSTLGQLLMKH--------------------GEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCCHHH
Confidence 99999999988766666665542 2478888999999999999765
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.41 E-value=3.7 Score=46.61 Aligned_cols=133 Identities=10% Similarity=-0.001 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
...++.+.-.+|.++|....+|-+-+.+..... +..++..++.++...+|-.+++|.+---..-... -|
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~---Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~w 542 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD---DMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TW 542 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cH
Confidence 567888888999999999999999998887653 6788999999999999999999988765544332 27
Q ss_pred HHHHHHHHHHHHhcCCCc--hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 192 ERESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
+..+.+|.++.+..|.-- ..|.||+-. .+........+......+..||.|+-+|.-.+.....
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~y--yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~ 608 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPY--YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE 608 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhcccc--ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 788888999999998765 455554432 2333346677888899999999999999988776654
No 111
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.95 E-value=3.1 Score=38.33 Aligned_cols=105 Identities=6% Similarity=-0.009 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC--------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMT--------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF 262 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~ 262 (423)
++...+-.+.....||.+..+++.-+-.+..+. ..++++.+...+..|.+||..+.|....+-.+..+-...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 567777888889999999999988777765542 146788899999999999999998888877766542210
Q ss_pred cccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 263 CYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
....+....++...+|..++...+|+|+.-+.-
T Consensus 87 ---------~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 87 ---------PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred ---------CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 012345678999999999999999999975443
No 112
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=90.92 E-value=0.74 Score=34.19 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (423)
.+.+++..+..++..+|++..++.....++.+.+. +++...++.+++..+|.|-.+|
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------YDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------HHHHHHHHHCCHGGGTTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCHHHHH
Confidence 68999999999999999999999998888887766 7899999999999999874443
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.90 E-value=7.9 Score=44.17 Aligned_cols=174 Identities=9% Similarity=-0.039 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------------------hHh
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------------------QAW 170 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------------------~~W 170 (423)
...+++++..+..+..+|+...+|.+-+.+..+.+ .+.+.... .++...++.. .+-
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~---~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRR---PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLAL 119 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc---chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence 44688999999999999999999999999666553 22332222 4444333332 444
Q ss_pred HHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH--------------------
Q 014516 171 SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE-------------------- 230 (423)
Q Consensus 171 ~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E-------------------- 230 (423)
.....++.+++. ..+..+..+++++.||.|..|=++=...+... ++++.
T Consensus 120 ~~LA~~Ydk~g~--------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~---dL~KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 120 RTLAEAYAKLNE--------NKKLKGVWERLVKADRDNPEIVKKLATSYEEE---DKEKAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred HHHHHHHHHcCC--------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhhhcchHH
Confidence 444444444443 57888999999999999999999887777654 23444
Q ss_pred HHHHHHHHhccCCChhHHH-HHHHHHHHhhhcccccC-CCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516 231 LKKSRNWSGLHVADNSCFH-YRRRLMLRNLEGFCYTQ-DNNSSGYFVETYQIWKEELDWNESLIKQYVGREAL 301 (423)
Q Consensus 231 L~~~~k~i~~d~~N~SaW~-yR~~Ll~~l~~~~~~~~-~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa 301 (423)
++.-.+.|..+|.|+.-+- ..+.++..+...+.... -+-. ........|++-+.+.+.+++.+|.|.=+
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~--~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY--EPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH--HHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 4444455555555554322 22222222110000000 0000 00011234667788889999999997765
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.70 E-value=1.3 Score=34.74 Aligned_cols=78 Identities=12% Similarity=0.018 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516 111 LAIEVMIHSKALLLLSCD--FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ 188 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe--~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~ 188 (423)
..++++..+++++..+|. +..+|.....++...+ .+.+++.+++. +..+|++..+.....-++..++.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~------ 73 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK------ 73 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-------
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC------
Confidence 357888999999999994 6778888999998876 79999999999 88899887777777777777766
Q ss_pred HhHHHHHHHHHH
Q 014516 189 WIIERESELVEK 200 (423)
Q Consensus 189 ~~~~~EL~~~~~ 200 (423)
+++.+...++
T Consensus 74 --y~eAi~~l~~ 83 (84)
T PF12895_consen 74 --YEEAIKALEK 83 (84)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHhc
Confidence 6677776654
No 115
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.11 E-value=2.6 Score=39.65 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc
Q 014516 110 TLAIEVMIHSKALLLLSCDFAT-----AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC 184 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~T-----aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~ 184 (423)
....++...+..+|.++|...| ....|.-++..+ ...+.++.-+++++..+|-+-.+--.|..+..++..
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl---~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek-- 183 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL---RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK-- 183 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh---hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh--
Confidence 4568899999999999999987 223344444444 367889999999999999988888888888888754
Q ss_pred ChhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516 185 STLQWIIERESELVEKIAERSKMNYRA 211 (423)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkNY~A 211 (423)
+++.++-+.++++.+|++-.|
T Consensus 184 ------~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 184 ------YEEALEDYKKILESDPSRREA 204 (271)
T ss_pred ------HHHHHHHHHHHHHhCcchHHH
Confidence 789999999999999998633
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=90.10 E-value=29 Score=39.90 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
-.+++|+.+.++|..||++|.||-+-+..+-+++ .+++++-+-.-.+....|++--+|.+-.-+.++..... .
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~--q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl-----~ 89 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG--QDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDIL-----D 89 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcc--CCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhh-----h
Confidence 3589999999999999999999999999999987 56899999999999999999999998777766522110 0
Q ss_pred HHHHHHHH---------------HHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516 191 IERESELV---------------EKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255 (423)
Q Consensus 191 ~~~EL~~~---------------~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll 255 (423)
+.+-..++ +...+.+|+.|+...--- ++ .. .+-+-+..-.+..+.|++-+-+|.-...+.
T Consensus 90 ld~~~~~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hl-l~---a~-eigei~~trq~~se~N~~k~~a~~rl~Qi~ 164 (1238)
T KOG1127|consen 90 LDRAAKCYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHL-LV---AK-EIGEIAVTRQDASEKNPKKFWAFCRLGQIQ 164 (1238)
T ss_pred hhHhHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHH-Hh---hH-HHHHHHhchHhhhhhCHHHHHhhCchHHHH
Confidence 22222333 334444555554442211 11 11 111222233366667777777777666665
Q ss_pred H
Q 014516 256 L 256 (423)
Q Consensus 256 ~ 256 (423)
.
T Consensus 165 l 165 (1238)
T KOG1127|consen 165 L 165 (1238)
T ss_pred h
Confidence 4
No 117
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.49 E-value=0.44 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=20.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHccC
Q 014516 119 SKALLLLSCDFATAWNSRKLIVSNKR 144 (423)
Q Consensus 119 t~~lLl~nPe~~TaWn~Rk~lL~~~~ 144 (423)
++++|.+||++..+|+..+.++...+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g 27 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG 27 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc
Confidence 46778888888888888888887765
No 118
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.26 E-value=3.3 Score=38.19 Aligned_cols=96 Identities=10% Similarity=-0.024 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC-
Q 014516 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKR-------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS- 185 (423)
Q Consensus 114 ~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~- 185 (423)
.+.+.++.....||.+..+++.=+-.|..+. ....+++++.-++.+|+++|+...+-..=.-.+..+....+
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d 88 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD 88 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC
Confidence 3455667778999999999998888777652 12347788888999999999986665555555544443222
Q ss_pred --hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516 186 --TLQWIIERESELVEKIAERSKMNY 209 (423)
Q Consensus 186 --~~~~~~~~EL~~~~~~l~~~pkNY 209 (423)
.....++....+..++.+.+|.|-
T Consensus 89 ~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 89 TAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 234567778888888888888764
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=89.01 E-value=10 Score=41.79 Aligned_cols=114 Identities=9% Similarity=0.072 Sum_probs=72.0
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
+|.....|-.++.++... ..++.+.++.+..-.+ .+|-|-...+.+ ..+++.....+..++.+
T Consensus 453 k~~d~~lyc~LGDv~~d~---s~yEkawElsn~~sar--------A~r~~~~~~~~~------~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDP---SLYEKAWELSNYISAR--------AQRSLALLILSN------KDFSEADKHLERSLEIN 515 (777)
T ss_pred CCCcchhHHHhhhhccCh---HHHHHHHHHhhhhhHH--------HHHhhccccccc------hhHHHHHHHHHHHhhcC
Confidence 677777777777777554 2455566655544333 333332222211 12566677777777888
Q ss_pred CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
|--...|.-++.+-=++.+ ++...+++......+|.|+-+|+......-++
T Consensus 516 plq~~~wf~~G~~ALqlek--~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEK--EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred ccchhHHHhccHHHHHHhh--hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 8777888777776655543 66677777777778888888887776655554
No 120
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.75 E-value=38 Score=36.49 Aligned_cols=212 Identities=10% Similarity=0.004 Sum_probs=126.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
.-.+.++.|+.++.++|=|.++.-.+=-++-.++ .-.+=+.+.-.+...+|+++-.|.-=+--.-.+++
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~---~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k-------- 327 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELG---KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK-------- 327 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc---ccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--------
Confidence 4467788999999999999998888777777665 33455666667778888888888765554444443
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh--------------------------------hhHHHHHHHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------------------------------EQVLDELKKSRNWS 238 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------------------------------~~~~~EL~~~~k~i 238 (423)
..++-.+..|+...||..-.||-.=+-.+...+. ...+-.=.+.....
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3566667777777777777777554444322210 01222335566666
Q ss_pred hccCCChhHHHHHHHHHHHhhhcc---------------cccCCC--CC----CCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516 239 GLHVADNSCFHYRRRLMLRNLEGF---------------CYTQDN--NS----SGYFVETYQIWKEELDWNESLIKQYVG 297 (423)
Q Consensus 239 ~~d~~N~SaW~yR~~Ll~~l~~~~---------------~~~~~~--~~----~~~~~~~~~~~~eEL~~~~~~I~~~p~ 297 (423)
...|+|-=.-|+.+.|......-. ..+..+ .+ -|........+++.+.+.+++|.+.|.
T Consensus 408 ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 408 AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 677777666655554433211000 000000 00 011112345678889999999999998
Q ss_pred CccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccch
Q 014516 298 REALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADAN 359 (423)
Q Consensus 298 neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~ 359 (423)
|-+.-.-..++... ++. ++.=++..+.++..+|++.
T Consensus 488 ~~~~~asig~iy~l-lgn-------------------------ld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 488 DASTHASIGYIYHL-LGN-------------------------LDKAIDHFHKALALKPDNI 523 (611)
T ss_pred chhHHHHHHHHHHH-hcC-------------------------hHHHHHHHHHHHhcCCccH
Confidence 87766554444321 111 2334556677888888873
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.93 E-value=2.9 Score=32.68 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHhCCC--chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516 147 PILMDELHLSALVLSYSPK--SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK--~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (423)
..+++++.+++.++...|. +..+|.....++.+.+. +.+.+.++.+ .+.+|+|..+....+-++-.++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 3678889999999998885 46677777888777765 6788888888 88888886666666666666654
Q ss_pred hhHHHHHHHHHH
Q 014516 225 EQVLDELKKSRN 236 (423)
Q Consensus 225 ~~~~~EL~~~~k 236 (423)
+++.++..++
T Consensus 74 --y~eAi~~l~~ 83 (84)
T PF12895_consen 74 --YEEAIKALEK 83 (84)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHhc
Confidence 6666665544
No 122
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.79 E-value=1.1 Score=28.54 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=28.4
Q ss_pred hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
.+|..+..+...++. +...+..+.++++.+|.|
T Consensus 2 ~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD--------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCC--------chHHHHHHHHHHHHCcCC
Confidence 578999998888776 789999999999999975
No 123
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.60 E-value=14 Score=36.07 Aligned_cols=90 Identities=6% Similarity=-0.144 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC---CchhchHHHHHHHh
Q 014516 148 ILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM---NYRAWNHRCWLVSF 221 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk---NY~AW~hR~wll~~ 221 (423)
.+.+.+..+..++..+|++ +.++.....+....+. +.+.+....+++..+|. ...||...+.+...
T Consensus 158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--------~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--------KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 6899999999999999999 4677767666665544 68888999999988776 57777777777766
Q ss_pred cChhhHHHHHHHHHHHHhccCCChhH
Q 014516 222 MTREQVLDELKKSRNWSGLHVADNSC 247 (423)
Q Consensus 222 ~~~~~~~~EL~~~~k~i~~d~~N~Sa 247 (423)
++. .......+++.++.+|....+
T Consensus 230 ~g~--~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 230 KGD--TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred cCC--HHHHHHHHHHHHHHCcCCHHH
Confidence 654 788899999999999877654
No 124
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.60 E-value=0.46 Score=31.21 Aligned_cols=27 Identities=22% Similarity=0.060 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516 198 VEKIAERSKMNYRAWNHRCWLVSFMTR 224 (423)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (423)
+.++++.+|.|..+|+..++++...+.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence 567888888888888888887776553
No 125
>PRK15331 chaperone protein SicA; Provisional
Probab=87.47 E-value=10 Score=34.50 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=87.8
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCH
Q 014516 70 KLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPIL 149 (423)
Q Consensus 70 ~Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~ 149 (423)
-.||+...+-.+|..|...|.+ ...+++.....-+...+|-+...|.-=.-+.+..+ .+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~------------------Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k---~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQ------------------GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK---QF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH---HH
Confidence 3488899999999999877644 23478889999999999999999988888888774 79
Q ss_pred HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516 150 MDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE 203 (423)
Q Consensus 150 ~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (423)
++++.+........+++|..-.|-..+...+++ ......+...+++
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~--------~~~A~~~f~~a~~ 133 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK--------AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHcccCCCCccchHHHHHHHhCC--------HHHHHHHHHHHHh
Confidence 999999999999999999999999999988876 3566666666666
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=87.23 E-value=37 Score=36.50 Aligned_cols=145 Identities=10% Similarity=0.046 Sum_probs=87.2
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC--CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh-----
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR--LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR----- 182 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~--~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~----- 182 (423)
...+++...+..+|..||++++-...-..++.... .....+.-+.+.+.+...+|++..+ ||..|..+..
T Consensus 52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---~rl~L~~~~g~~F~~ 128 (517)
T PF12569_consen 52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP---RRLPLDFLEGDEFKE 128 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch---hHhhcccCCHHHHHH
Confidence 45678888999999999999887665555441110 0124566688888888888887544 3332221110
Q ss_pred -----------cc-C----hhHHhHHHH--HHHHHHHHHh-------------------cCCCchhc--hHHHHHHHhcC
Q 014516 183 -----------NC-S----TLQWIIERE--SELVEKIAER-------------------SKMNYRAW--NHRCWLVSFMT 223 (423)
Q Consensus 183 -----------~~-~----~~~~~~~~E--L~~~~~~l~~-------------------~pkNY~AW--~hR~wll~~~~ 223 (423)
.+ + ++..++.+. ..++..++.. .|.....| .+......+++
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 00 0 111111110 1122222111 22333334 55566666665
Q ss_pred hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516 224 REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL 259 (423)
Q Consensus 224 ~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~ 259 (423)
. +.+.|+++++.|+..|...-...-+.-++.+..
T Consensus 209 ~--~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 209 D--YEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred C--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 4 889999999999999999999999999888863
No 127
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.83 E-value=26 Score=36.49 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
..++...+++++.+||...++-.-=.-+|...+ .+++-=.+...++.+.--...-|.--.. .+.. .+-+
T Consensus 248 n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg---~~e~~~~L~~~Lf~~~~~ta~~wfV~~~---~l~~-----~K~~ 316 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG---GCEQDSALMDYLFAKVKYTASHWFVHAQ---LLYD-----EKKF 316 (564)
T ss_pred chHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc---CHhhHHHHHHHHHhhhhcchhhhhhhhh---hhhh-----hhhH
Confidence 466777888999999999998887777777765 6677777777777755322222321111 1111 1337
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF 248 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW 248 (423)
+..|.+++++++.+|+|-.|.--++-++.++++ .+...-.+...+.+-|.+-.++
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--~~~A~IaFR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALER--HTQAVIAFRTAQMLAPYRLEIY 371 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccc--hHHHHHHHHHHHhcchhhHHHH
Confidence 899999999999999999999999999988876 4666666677777777666553
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=3.8 Score=42.33 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHcc---C----CcCCHHHHHHHHHHHHHhCCCch----hHhHHHHHHHH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLI--VSNK---R----LLPILMDELHLSALVLSYSPKSE----QAWSHRRWVIN 178 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~l--L~~~---~----~~~~~~~EL~~~~~lL~~nPK~y----~~W~hRrwll~ 178 (423)
.+.++....+.|.++|+|+++-..++.+ |... + ....+..+-+..+..|.++|.+- .++..|.-+..
T Consensus 219 ~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 219 ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 3667788999999999999876654432 1111 0 12468889999999999999874 44556776666
Q ss_pred HhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516 179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA 243 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~ 243 (423)
+++. +.+.+.-|+.++.+||.--.|..-|.-+.--+ ..|++.++.+++.+...-+
T Consensus 299 rLgr--------l~eaisdc~~Al~iD~syikall~ra~c~l~l--e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 299 RLGR--------LREAISDCNEALKIDSSYIKALLRRANCHLAL--EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccCC--------chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccc
Confidence 6665 68899999999999997766666666554434 4589999999999887655
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=86.55 E-value=13 Score=38.45 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+.+++..+.+...+|+.... =-+++...+ .-.++++++...|+.+|.++.+.+--.-.+.+..+ .
T Consensus 185 ~~~ai~lle~L~~~~pev~~~---LA~v~l~~~---~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--------~ 250 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPEVAVL---LARVYLLMN---EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--------Y 250 (395)
T ss_pred HHHHHHHHHHHHhcCCcHHHH---HHHHHHhcC---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--------H
Confidence 345555556655555553221 122222221 23455666666666666665555543333222222 3
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHH
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELK 232 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~ 232 (423)
+.++.+..++.+..|.++.+|.+-.-+.-.++. ++.+|.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALl 289 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALL 289 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHH
Confidence 555666666666666666666664444433332 444443
No 130
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.01 E-value=2.1 Score=27.02 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=28.9
Q ss_pred hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 167 EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 167 y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
+.+|.+...+....+. +.+.+..+.++++.+|+|
T Consensus 1 a~~~~~lg~~~~~~~~--------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN--------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHCcCC
Confidence 3578899998888776 789999999999999986
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.55 E-value=27 Score=34.61 Aligned_cols=127 Identities=10% Similarity=-0.019 Sum_probs=99.5
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
+..+..+...+.-|..||++..-|-.=+++....+ ....++.-+...++..|+++.+|--=..++-.-... .
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~---~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-----~ 207 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALG---RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-----Q 207 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----c
Confidence 34567778889999999999999999999888876 789999999999999999999998766665543321 2
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS 246 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S 246 (423)
+-.+.-.+..+++..||.|-.+=++=.+-...- ..+.+.+..-..+++..|-|-.
T Consensus 208 ~ta~a~~ll~~al~~D~~~iral~lLA~~afe~--g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 208 MTAKARALLRQALALDPANIRALSLLAFAAFEQ--GDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCCCc
Confidence 234556789999999999998877755544333 3478888888888888877653
No 132
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.32 E-value=3.1 Score=28.49 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH
Q 014516 132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH 172 (423)
Q Consensus 132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h 172 (423)
+|....+.....+ .++++...+..++..+|++..+|..
T Consensus 3 ~~~~la~~~~~~G---~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLG---QPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 5666677777765 7899999999999999999999864
No 133
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.69 E-value=33 Score=37.00 Aligned_cols=164 Identities=8% Similarity=-0.058 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH------------------------------
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLS------------------------------ 161 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~------------------------------ 161 (423)
.+++-+...++-.+||.+..||-.=+-.+...+ ..++++.....+-+
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~---EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG---EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc---hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 366667777777788888888877666554332 33444444444444
Q ss_pred ----hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHH
Q 014516 162 ----YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW 237 (423)
Q Consensus 162 ----~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~ 237 (423)
++|..+-+-|.-+-+.-+..... .....++..+..+...+...++=-..|+.-+.+.++++. +++.+.+..+.
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~-~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~--~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYP-EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK--YEEAIDYYQKA 481 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhH-HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh--HHHHHHHHHHH
Confidence 44444444333332222111100 011223444444444444444333345555555555544 78899999999
Q ss_pred HhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516 238 SGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREAL 301 (423)
Q Consensus 238 i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa 301 (423)
+.+.|.|-+...--+++-..+ + .++.++++.++++-++|.|..+
T Consensus 482 L~l~~k~~~~~asig~iy~ll-g-------------------nld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLL-G-------------------NLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHh-c-------------------ChHHHHHHHHHHHhcCCccHHH
Confidence 999999998887777765543 1 3678999999999999999765
No 134
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.67 E-value=3.3 Score=26.29 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS 166 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~ 166 (423)
.+|..++.+....+ .+++.+..+..+|+.+|++
T Consensus 2 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLG---DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence 57889999888875 7999999999999999974
No 135
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=81.12 E-value=95 Score=34.40 Aligned_cols=132 Identities=8% Similarity=-0.051 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHH-------------HH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNS-RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRW-------------VI 177 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~-Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrw-------------ll 177 (423)
.++......+++...|+---.|-. =+.--.. + +...+..++..++..||.|-.+|-.--- ++
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~a-g---dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKA-G---DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-C---CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 466777888999999999888874 2222223 2 6788999999999999999999965322 22
Q ss_pred HHhhhc-cC-----------hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516 178 NMISRN-CS-----------TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 178 ~~l~~~-~~-----------~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~ 245 (423)
.+.... ++ -..+..++++.+|+.+++.+|...-.|--.+.+..+++. .+..-+.+..-++.-|.-.
T Consensus 642 akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~--ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 642 AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN--IEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH--HHHHHHHHHhccccCCCCc
Confidence 222111 11 023456889999999999999988888888888887754 3333344444445555555
Q ss_pred hHHH
Q 014516 246 SCFH 249 (423)
Q Consensus 246 SaW~ 249 (423)
--|-
T Consensus 720 pLWl 723 (913)
T KOG0495|consen 720 PLWL 723 (913)
T ss_pred hHHH
Confidence 5554
No 136
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.31 E-value=17 Score=37.50 Aligned_cols=87 Identities=13% Similarity=0.001 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
.....++...+++|.+.|.|.-|..-|++++..++ .++.+...+.+++...|.|-.+=+--.-+-++...
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~---e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~------- 340 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALG---EYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE------- 340 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-------
Confidence 34568999999999999999999999999998886 78999999999999999986654333333333322
Q ss_pred hHHHHHHHHHHHHHhcC
Q 014516 190 IIERESELVEKIAERSK 206 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~p 206 (423)
..+.|-++..+|+..-+
T Consensus 341 ~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 341 YEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 24566677777766554
No 137
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.64 E-value=19 Score=38.30 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHHHHHHHHH---hhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHH
Q 014516 76 QILIPVYKAAKHAFISALR---QYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDE 152 (423)
Q Consensus 76 ~~l~~lY~~A~~~f~~~l~---~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~E 152 (423)
..++.+|+.|...|..-++ +|-+- + ......-++-..+.++|.++|++...|-+=..-....+ ...+..
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f---~---kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n--~ni~sa 159 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAF---C---KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN--LNIESA 159 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHH---H---HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc--cchHHH
Confidence 3456789999888752211 11000 0 01122467778999999999999999998776665544 347888
Q ss_pred HHHHHHHHHhCCCchhHhH--HHHHHHH--Hhhhc-------cChh-HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHH
Q 014516 153 LHLSALVLSYSPKSEQAWS--HRRWVIN--MISRN-------CSTL-QWIIERESELVEKIAERSKMNYRAWNHRCWLVS 220 (423)
Q Consensus 153 L~~~~~lL~~nPK~y~~W~--hRrwll~--~l~~~-------~~~~-~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~ 220 (423)
-.++...|+.||.|+.+|. .|..+.. ++... .++. .++-..|.+....+...+...+.+-+-- ..
T Consensus 160 RalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e---~~ 236 (568)
T KOG2396|consen 160 RALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE---LS 236 (568)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc---hH
Confidence 9999999999999999997 3444332 11111 0111 1222223333333333333222221110 00
Q ss_pred hcChhhHHHHHH--HHHHHHhccCCChhHHHHHHHHHHH
Q 014516 221 FMTREQVLDELK--KSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 221 ~~~~~~~~~EL~--~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
-........|+. ..+.....+|.|...|.+.+.=...
T Consensus 237 ~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~ 275 (568)
T KOG2396|consen 237 VAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELE 275 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHH
Confidence 000012334442 3455667799999999987654333
No 138
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=72 Score=32.99 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY 209 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY 209 (423)
..+..++..++.+|...|+|..+-.-|..++..+.. ++.+.....++++.+|.|-
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e--------~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE--------YDLARDDFQKALKLEPSNK 325 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhCCCcH
Confidence 367888999999999999999998888888877765 6788888899999999883
No 139
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.28 E-value=7.5 Score=24.32 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS 166 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~ 166 (423)
.+|..++.+....+ .+++++..+..++..+|++
T Consensus 2 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG---NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCcCC
Confidence 57888888888876 7899999999999999975
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=76.74 E-value=18 Score=37.44 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
....++++....+|..+|..+...+.-.+.+...+ +.+.++.....+....|..+..|.+-.-+..+++.
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~---~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d------- 283 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK---KYELALEIAKKAVELSPSEFETWYQLAECYIQLGD------- 283 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC-------
Confidence 34578999999999999999999999999888775 67999999999999999999999998777777665
Q ss_pred hHHHHHHHHHHH
Q 014516 190 IIERESELVEKI 201 (423)
Q Consensus 190 ~~~~EL~~~~~~ 201 (423)
++.+|..++.+
T Consensus 284 -~e~ALlaLNs~ 294 (395)
T PF09295_consen 284 -FENALLALNSC 294 (395)
T ss_pred -HHHHHHHHhcC
Confidence 67777655543
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.79 E-value=7.5 Score=37.16 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=73.7
Q ss_pred HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchH
Q 014516 135 SRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH 214 (423)
Q Consensus 135 ~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~h 214 (423)
-|+-+-.++| ...=+-.=++..|.++||-+.++||-+--+..-+. +...++..+..++.||.+-+|--.
T Consensus 70 ERGvlYDSlG---L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 70 ERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------FDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred Hhcchhhhhh---HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--------chHHHHHhhhHhccCCcchHHHhc
Confidence 3555555554 11122223457789999999999999987766554 678889999999999999999888
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHhccCCCh--hHHHHH
Q 014516 215 RCWLVSFMTREQVLDELKKSRNWSGLHVADN--SCFHYR 251 (423)
Q Consensus 215 R~wll~~~~~~~~~~EL~~~~k~i~~d~~N~--SaW~yR 251 (423)
|+.-+-..++ ++-..+.+.+.-..||+|- +-|-|.
T Consensus 139 Rgi~~YY~gR--~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 139 RGIALYYGGR--YKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred cceeeeecCc--hHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 8766544444 4555566777788888885 455543
No 142
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=74.94 E-value=66 Score=35.77 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..+++.+..+..+.+||=....|..++-+-.++. +.+.....+....+..|.+.++||.-.-..-++++
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle---k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-------- 568 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLE---KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-------- 568 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh---hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh--------
Confidence 3577888899999999999999999988777664 67888888888899999999999987666555554
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL 240 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~ 240 (423)
-.+.......+++-+-.|-..|-.=.-|....+. +++.+..+.+++.+
T Consensus 569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYHRLLDL 616 (777)
T ss_pred hHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHHHHHHh
Confidence 2566677778888887777777665555444443 77888888777653
No 143
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.32 E-value=7.1 Score=26.66 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=30.5
Q ss_pred hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchH
Q 014516 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH 214 (423)
Q Consensus 168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~h 214 (423)
.+|.-...++..++. +++...+..++++.+|.|-.+|..
T Consensus 2 ~~~~~la~~~~~~G~--------~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQ--------PDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCCHHHHHH
Confidence 355556666666655 688999999999999999999865
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=70.99 E-value=53 Score=30.28 Aligned_cols=103 Identities=11% Similarity=-0.108 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh---HhHHHHHHHHHhhhcc-
Q 014516 112 AIEVMIHSKALLLLSCDFAT---AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ---AWSHRRWVINMISRNC- 184 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~T---aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~---~W~hRrwll~~l~~~~- 184 (423)
..+++...+.++...|.... |........... .++..++...+..+..+|+++. +...+....-......
T Consensus 21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~---~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ---GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 57788888888888776543 444444444444 3799999999999999999874 5666666543332111
Q ss_pred --ChhHHhHHHHHHHHHHHHHhcCCCchhchHHHH
Q 014516 185 --STLQWIIERESELVEKIAERSKMNYRAWNHRCW 217 (423)
Q Consensus 185 --~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~w 217 (423)
..-+......+..+...++++|.+-++-.=+.-
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 101233567788888888888888776654443
No 145
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.06 E-value=12 Score=39.33 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
..+..+..+..+++.++|.|...|.-|.....+... +...+.-+.++++.+|+.--|..-|+-.+..+..
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--------~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-- 87 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--------FGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-- 87 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeech--------hhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH--
Confidence 467888899999999999999999999854444433 6778888889999999988888888666655543
Q ss_pred HHHHHHHHHHHHhccCCChhH
Q 014516 227 VLDELKKSRNWSGLHVADNSC 247 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~Sa 247 (423)
..+.+....+|....|.+--+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 667777788888888877644
No 146
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=67.42 E-value=1.8e+02 Score=31.26 Aligned_cols=135 Identities=7% Similarity=0.016 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
+++|+..+.+|..+|........+.+++.+.| ++.++...++.+-..++.. |.+-.+..+..- -....+
T Consensus 211 ~~Al~~Id~aI~htPt~~ely~~KarilKh~G---~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~L-Ra~~~e 279 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTLVELYMTKARILKHAG---DLKEAAEAMDEARELDLAD-------RYINSKCAKYLL-RAGRIE 279 (517)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHH-HCCCHH
Confidence 45666666666666666666666666666554 5555555555555544432 111111110000 001134
Q ss_pred HHHHHHHHHHHhc--CCCc-----hhchHHHHHHHhcChhhHHHHHHHHH------HHHhccCCChhHHHHHHHHHHHh
Q 014516 193 RESELVEKIAERS--KMNY-----RAWNHRCWLVSFMTREQVLDELKKSR------NWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 193 ~EL~~~~~~l~~~--pkNY-----~AW~hR~wll~~~~~~~~~~EL~~~~------k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
+....+......+ |.+. ..|.....--.......+-..|..+. .-+.-|--|||.|..|...+...
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y 358 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAY 358 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHH
Confidence 4444444443333 2221 25544332222221112333333322 23346788999999998876654
No 147
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=66.93 E-value=93 Score=27.63 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH-hCCCch---hHhHHHHHHHHHhhh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLS-YSPKSE---QAWSHRRWVINMISR 182 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~-~nPK~y---~~W~hRrwll~~l~~ 182 (423)
.-+++|+.+.++|.+.|+..++.|.|...+.-.+ +.+++|.-++.+|. .+|+.- +++..|.-+...++.
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~---~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQG---DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHcC---ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4588999999999999999999999999886554 56888888888887 355543 456677777666554
No 148
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=65.80 E-value=13 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh----C---CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHH
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY----S---PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVE 199 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~----n---PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~ 199 (423)
|+-.++++....+....+ .+++++..+..++.. . |....+++....+...++. +++.+.+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~ 70 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELG---RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD--------YEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHH
Confidence 455678888888888875 789999999998863 1 2224455555666666555 678888888
Q ss_pred HHHHhc
Q 014516 200 KIAERS 205 (423)
Q Consensus 200 ~~l~~~ 205 (423)
++++..
T Consensus 71 ~al~i~ 76 (78)
T PF13424_consen 71 KALDIF 76 (78)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 887754
No 149
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.48 E-value=14 Score=38.81 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=57.6
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
..+.....+..++++++|.|-..|.-|.... +....+...+....++|+.+|+..-|+..|.....++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~--lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAH--LKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhh--eeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 3478889999999999999999999998443 3334578899999999999999999999997766665
No 150
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.68 E-value=2e+02 Score=30.30 Aligned_cols=169 Identities=9% Similarity=-0.005 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCC-----------------CchhHhHHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSP-----------------KSEQAWSHR 173 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nP-----------------K~y~~W~hR 173 (423)
...++|...++.|..||.|-.+.-.++.+|.+++ ..+++.--+..+...-| +.-++-.--
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~---R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALE---RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhcc---chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4588999999999999999999999999999875 44444433344433333 111222222
Q ss_pred HHHHHHhhhccCh-----------hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516 174 RWVINMISRNCST-----------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 174 rwll~~l~~~~~~-----------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~ 242 (423)
+|++..+...... -+..-++.-.|.++.+...|---.|=.-..=+...=+ ...+.+...++.+..-
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg--~~~D~i~LLe~~L~~~- 468 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG--PTKDIIKLLEKHLIIF- 468 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC--ccchHHHHHHHHHhhc-
Confidence 3444333322100 0011245556666666666643333222221111111 1223344444433221
Q ss_pred CChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 243 ADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 243 ~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
.|-+--.+...++. ....+++.+++...+++.||.|+.+---.
T Consensus 469 ~D~~LH~~Lgd~~~--------------------A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMR--------------------AQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred cccHHHHHHHHHHH--------------------HhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 22222222222222 22467899999999999999999765443
No 151
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.57 E-value=1.6e+02 Score=29.30 Aligned_cols=97 Identities=11% Similarity=-0.022 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHccC---------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516 118 HSKALLLLSCDFATAWNSRKLIVSNKR---------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ 188 (423)
Q Consensus 118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~---------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~ 188 (423)
-++..+.-||.+..+|--=-..-..+. .....+.-|..++++|..||.+..+|-..--+..++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~------ 80 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD------ 80 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC------
Confidence 356678889999999963222221111 01235677899999999999999999887666665542
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHH-HHHHHhc
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHR-CWLVSFM 222 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR-~wll~~~ 222 (423)
-..=..-.++++..+|.++-.|... .|...++
T Consensus 81 --~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 81 --SEKLAKKWEELLFKNPGSPELWREYLDFRQSNF 113 (321)
T ss_pred --HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 1222345788999999999999764 4554444
No 152
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.25 E-value=16 Score=22.91 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=25.7
Q ss_pred hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
.+|....-+...++. ++..+....++++.+|+|
T Consensus 2 ~~~~~lg~~y~~~~~--------~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD--------YEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTS--------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCC
Confidence 467777777777665 789999999999999954
No 153
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.45 E-value=1e+02 Score=30.74 Aligned_cols=59 Identities=12% Similarity=-0.118 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR 173 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hR 173 (423)
.+.-|..++++|..||++...|-..=++..... .-++-..--..+|..||.++.+|-.+
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~---~~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVW---DSEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 355667788888999999999988777766653 45556777889999999999999754
No 154
>PRK10941 hypothetical protein; Provisional
Probab=61.20 E-value=76 Score=31.12 Aligned_cols=58 Identities=16% Similarity=0.025 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHh
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAW 170 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W 170 (423)
...+.+|.+.+.+|.++|++..-|--|+.+...++ ....++.-++..+...|+.+.+=
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~---c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD---CEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCchhHH
Confidence 34566777777777777777777777777777765 45666666666667777666543
No 155
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=57.35 E-value=2.3e+02 Score=28.99 Aligned_cols=86 Identities=8% Similarity=-0.076 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSR-KLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~R-k~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
..+++......+...+|++..+-..+ .++....+ +.+.++...+.++..+|++..+.....-+..+.+.
T Consensus 133 ~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g---~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd------- 202 (398)
T PRK10747 133 DEARANQHLERAAELADNDQLPVEITRVRIQLARN---ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA------- 202 (398)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-------
Confidence 35677788889999999987665544 44444443 78999999999999999999887766666555443
Q ss_pred hHHHHHHHHHHHHHhcCC
Q 014516 190 IIERESELVEKIAERSKM 207 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pk 207 (423)
|+..+.++.++.+..+.
T Consensus 203 -w~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 203 -WSSLLDILPSMAKAHVG 219 (398)
T ss_pred -HHHHHHHHHHHHHcCCC
Confidence 56666666666655544
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=55.50 E-value=2.2e+02 Score=28.24 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc-Chhh
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM-TREQ 226 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~-~~~~ 226 (423)
..+.-+.-+..-|..||.+..-|---.-+.-.++. ....+.-+.++.++.|+|-..|.--.=++-.. +..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ 208 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQM 208 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcc
Confidence 35555666677788999999999776666655554 67888999999999999999887644444333 2234
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr 306 (423)
-.+.-+..++.+.+||.|..+-.|..+-...= .-+.+.+..-..++...|-|-. ||
T Consensus 209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~--------------------g~~~~A~~~Wq~lL~~lp~~~~----rr 264 (287)
T COG4235 209 TAKARALLRQALALDPANIRALSLLAFAAFEQ--------------------GDYAEAAAAWQMLLDLLPADDP----RR 264 (287)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHHhcCCCCCc----hH
Confidence 45667889999999999999988888755431 1366777777788877776643 34
Q ss_pred HHHHHHH
Q 014516 307 FLSMYLI 313 (423)
Q Consensus 307 ~Ll~~l~ 313 (423)
.++...+
T Consensus 265 ~~ie~~i 271 (287)
T COG4235 265 SLIERSI 271 (287)
T ss_pred HHHHHHH
Confidence 5555433
No 157
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=52.46 E-value=32 Score=21.43 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK 165 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK 165 (423)
.+|..++.+...++ ++++++..+..++..+|.
T Consensus 2 ~~~~~lg~~y~~~~---~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG---DYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC
Confidence 57888888888876 789999999999998884
No 158
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.50 E-value=1.4e+02 Score=32.09 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=70.7
Q ss_pred ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHH-HHHHHHhhhccChh
Q 014516 109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR-RWVINMISRNCSTL 187 (423)
Q Consensus 109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hR-rwll~~l~~~~~~~ 187 (423)
.....+++..+..++.--+.+.+.|..=-....+.+ ...+--..+..+|++||+++.+|-+- .|.+..-..
T Consensus 84 ~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~---~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n----- 155 (568)
T KOG2396|consen 84 DSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKK---TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN----- 155 (568)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-----
Confidence 345678888999999988889999975444443332 35666778899999999999999986 455443222
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhch
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWN 213 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~ 213 (423)
.+..-++..+.++.||.+--.|.
T Consensus 156 ---i~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 156 ---IESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred ---hHHHHHHHHHHhhcCCCChHHHH
Confidence 56777889999999999998884
No 159
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=49.12 E-value=2.6e+02 Score=27.24 Aligned_cols=164 Identities=11% Similarity=-0.016 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
..++...-..-+.||+...+-++-+-+...+ +-.+-+....+++..+||...+=+--. ..++.. .-+.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G----~a~~~l~~~~~~~~~~~~d~~ll~~~g--k~~~~~------g~~~ 117 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSIAKLATALYLRG----DADSSLAVLQKSAIAYPKDRELLAAQG--KNQIRN------GNFG 117 (257)
T ss_pred hHHHHHHHHHHhcCcchHHHHHHHHHHHhcc----cccchHHHHhhhhccCcccHHHHHHHH--HHHHHh------cchH
Confidence 3355666677889999999933333333332 456778888999999999977764411 111111 1278
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCC
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSG 272 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~ 272 (423)
..+..+.++...+|.|-.+|+-.+-++.+.+. ....=..+.+.+++.+.+-+.-++..+.+.- ..
T Consensus 118 ~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr--~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L--~g----------- 182 (257)
T COG5010 118 EAVSVLRKAARLAPTDWEAWNLLGAALDQLGR--FDEARRAYRQALELAPNEPSIANNLGMSLLL--RG----------- 182 (257)
T ss_pred HHHHHHHHHhccCCCChhhhhHHHHHHHHccC--hhHHHHHHHHHHHhccCCchhhhhHHHHHHH--cC-----------
Confidence 89999999999999999999999999999876 4555566788899999999998888765431 11
Q ss_pred chhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 273 YFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 273 ~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
-++..-.++..+...-+.|..+=+.+-++..
T Consensus 183 -------d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 183 -------DLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred -------CHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 1344555556666555667777777665553
No 160
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.58 E-value=65 Score=32.51 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=64.0
Q ss_pred HhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHH-HHHHHHhhhccChhHHhHHHHHHHHHHHH
Q 014516 124 LLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR-RWVINMISRNCSTLQWIIERESELVEKIA 202 (423)
Q Consensus 124 l~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hR-rwll~~l~~~~~~~~~~~~~EL~~~~~~l 202 (423)
..-|.+.+.|..=--.+.+.+ .+.+--..+..+|++||-+..+|-+- ..=+..... ++..-.+..+.+
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k---~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~an--------i~s~Ra~f~~gl 169 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKK---MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIAN--------IESSRAMFLKGL 169 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhcc--------HHHHHHHHHhhh
Confidence 456778888876555555543 56666788899999999999999763 221221111 456667888899
Q ss_pred HhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516 203 ERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL 240 (423)
Q Consensus 203 ~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~ 240 (423)
+.+|+|-..|.- -+.-||.++++++..
T Consensus 170 R~N~~~p~iw~e-----------yfr~El~yiTKL~~R 196 (435)
T COG5191 170 RMNSRSPRIWIE-----------YFRMELMYITKLINR 196 (435)
T ss_pred ccCCCCchHHHH-----------HHHHHHHHHHHHHhh
Confidence 999999888842 134467777776643
No 161
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=47.31 E-value=70 Score=28.39 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc-CC---CchhchHHHHHHHhc
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS-KM---NYRAWNHRCWLVSFM 222 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~-pk---NY~AW~hR~wll~~~ 222 (423)
.++..+|+.+...|..-|+.+.++|.|...+.--+. .++.|+-.+++++.. |+ --+++..|+-+.+..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999987764433 466777777777754 22 124455555555444
Q ss_pred C
Q 014516 223 T 223 (423)
Q Consensus 223 ~ 223 (423)
+
T Consensus 129 g 129 (175)
T KOG4555|consen 129 G 129 (175)
T ss_pred C
Confidence 3
No 162
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=47.03 E-value=1.2e+02 Score=29.92 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhCCCchhHh-------HHHHHHHHHhhhcc--C-----hhHHhHHHHHHHHHHHHHhcCCCchhchHHH
Q 014516 151 DELHLSALVLSYSPKSEQAW-------SHRRWVINMISRNC--S-----TLQWIIERESELVEKIAERSKMNYRAWNHRC 216 (423)
Q Consensus 151 ~EL~~~~~lL~~nPK~y~~W-------~hRrwll~~l~~~~--~-----~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~ 216 (423)
.-+..+..=...+|+||.+| .++.|-+.--+-.. + .+....+.......++++++||-..|...-.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 45777777788999998665 45555544211111 1 1234567778888999999999999999988
Q ss_pred HHHHhcChhhHHHHH
Q 014516 217 WLVSFMTREQVLDEL 231 (423)
Q Consensus 217 wll~~~~~~~~~~EL 231 (423)
-+...++.+.|..+|
T Consensus 141 ~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 141 NISAYFGEPDWLAAL 155 (277)
T ss_pred HHHhhcCCchHHHHH
Confidence 888888887777764
No 163
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=43.22 E-value=1.4e+02 Score=32.25 Aligned_cols=115 Identities=10% Similarity=-0.051 Sum_probs=78.0
Q ss_pred CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC-hhhHHHHHHHHHHHHhccC
Q 014516 164 PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT-REQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 164 PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-~~~~~~EL~~~~k~i~~d~ 242 (423)
||+|++--+-.|.++.-.. .-....+..++....++++..|-+-.....|.-++-.-. ..+.-.+|..|...++.||
T Consensus 365 ~~~~eL~e~ie~~~~egnd--~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 365 PRFYELPENIEKFKTEGND--GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred cchhhchHHHHHHHhhccc--hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 3455555555555543211 112345788999999999999999888888755542211 1134567899999999999
Q ss_pred CChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 243 ADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 243 ~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
+-+-||.+..-.|..+. .+.+.+++...+...+|.|..
T Consensus 443 s~~kah~~la~aL~el~--------------------r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELT--------------------RYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHHHHHh--------------------hHHHhhhhHHHHhhcCchhhh
Confidence 99999999887777652 355667777777777776554
No 164
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=42.59 E-value=3.3e+02 Score=26.55 Aligned_cols=133 Identities=8% Similarity=-0.062 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
+..+..-.+++..+|...++-+-=.+.....+ .+..++..+.++.+..|++..+|+-..-++.+++. ..
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g---~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr--------~~ 151 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG---NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR--------FD 151 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHhc---chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC--------hh
Confidence 44555667778888888888766454444443 68999999999999999999999999999999987 35
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
..-.-+.++++..|.+-.+-+.-...+-- ..+.+..-.++......-+.|...=+.+.+++...
T Consensus 152 ~Ar~ay~qAl~L~~~~p~~~nNlgms~~L--~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 152 EARRAYRQALELAPNEPSIANNLGMSLLL--RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHH--cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 55567788999999887776664433211 12366666777777777777888888888777654
No 165
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=41.90 E-value=4.8e+02 Score=28.13 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC----CccHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG----REALW 302 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~----neSaW 302 (423)
..++++....+++.+| +-+--+-|..|+..++.. +...-++.++..+.+ ...+|
T Consensus 275 ~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLel---------------------q~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 275 LREAIKMFRDLLKEFP-NLDNLNIRENLIEALLEL---------------------QAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred hHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhc---------------------CCHHHHHHHHHHhccccCCchHHH
Confidence 6778888999998877 334455666777776543 112223555666544 35789
Q ss_pred HHHHHHHH
Q 014516 303 LHRRFLSM 310 (423)
Q Consensus 303 ~yrr~Ll~ 310 (423)
+|-+-|+.
T Consensus 333 ~YTaALLk 340 (539)
T PF04184_consen 333 CYTAALLK 340 (539)
T ss_pred HHHHHHHH
Confidence 99887764
No 166
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=40.47 E-value=54 Score=19.92 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=20.9
Q ss_pred HHHHHHccCCcCCHHHHHHHHHHHHHhCCCc
Q 014516 136 RKLIVSNKRLLPILMDELHLSALVLSYSPKS 166 (423)
Q Consensus 136 Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~ 166 (423)
...+....+ ..++++.....++..+|+|
T Consensus 6 ~a~~~~~~g---~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLG---DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHC---HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHcc---CHHHHHHHHHHHHHHCcCC
Confidence 344444443 6889999999999999986
No 167
>PRK10941 hypothetical protein; Provisional
Probab=40.33 E-value=1e+02 Score=30.21 Aligned_cols=60 Identities=10% Similarity=-0.050 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYR 251 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR 251 (423)
-++..|.+++.++..+|..-+-|.=|+.+..+++. +..++...+.+++..|.+-.+=--+
T Consensus 196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--EHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHhCCCchhHHHHH
Confidence 37899999999999999999999999999999987 6777888888888888776664333
No 168
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.90 E-value=45 Score=33.88 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=78.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHH
Q 014516 75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELH 154 (423)
Q Consensus 75 ~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~ 154 (423)
+.+....|..|.+.=-+++..+. ....+++++....+|.+||......-.|..++..+. .-..+++
T Consensus 104 ~e~Tee~~eqa~e~k~~A~eAln-----------~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~---kp~~air 169 (377)
T KOG1308|consen 104 AEITEEMMDQANDKKVQASEALN-----------DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLK---KPNAAIR 169 (377)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----------CcchhhhhcccccccccCCchhhhcccccceeeecc---CCchhhh
Confidence 56666677777655444444331 233688999999999999999999999999998875 5678899
Q ss_pred HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
=++..+.+||++..-+-.|...=..++. |.++-.....+++++
T Consensus 170 D~d~A~ein~Dsa~~ykfrg~A~rllg~--------~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 170 DCDFAIEINPDSAKGYKFRGYAERLLGN--------WEEAAHDLALACKLD 212 (377)
T ss_pred hhhhhhccCcccccccchhhHHHHHhhc--------hHHHHHHHHHHHhcc
Confidence 9999999999998877777654433333 455555555555544
No 169
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.98 E-value=23 Score=35.93 Aligned_cols=97 Identities=7% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchH
Q 014516 135 SRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH 214 (423)
Q Consensus 135 ~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~h 214 (423)
-|....+.+. ...+...++.++..+.+||-+..+..-|.-++.++.+ ...++.-|..+++.+|..-...-.
T Consensus 117 ~k~~A~eAln-~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--------p~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 117 KKVQASEALN-DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--------PNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHHHhc-CcchhhhhcccccccccCCchhhhcccccceeeeccC--------CchhhhhhhhhhccCcccccccch
Confidence 3445555554 3468899999999999999999999999999988876 478889999999999988877777
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516 215 RCWLVSFMTREQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 215 R~wll~~~~~~~~~~EL~~~~k~i~~d~ 242 (423)
|...-..++. |+++-.+....|++|.
T Consensus 188 rg~A~rllg~--~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 188 RGYAERLLGN--WEEAAHDLALACKLDY 213 (377)
T ss_pred hhHHHHHhhc--hHHHHHHHHHHHhccc
Confidence 7665544443 6666666666666653
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=35.08 E-value=2.8e+02 Score=23.54 Aligned_cols=68 Identities=13% Similarity=-0.016 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC---chhHhHHHHHHHHHhhh
Q 014516 112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK---SEQAWSHRRWVINMISR 182 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK---~y~~W~hRrwll~~l~~ 182 (423)
.++++..++.+|..-++. ..++......+..+| .+++.+..++..+..+|. +..+.....-++..++.
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG---~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG---RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 578888888888765443 335666667777776 789999999999999999 66666666655555554
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=35.08 E-value=3.5e+02 Score=24.60 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (423)
+++++..++.-+...+|-++..|.--.-+.+.+.. ++..+.+...++..++.+|..-.|-+-+.-.++. .
T Consensus 52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~--------y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~--~ 121 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ--------FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK--A 121 (165)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC--H
Confidence 68999999999999999877777655555555544 8999999999999999999999999988877765 4
Q ss_pred HHHHHHHHHHHh
Q 014516 228 LDELKKSRNWSG 239 (423)
Q Consensus 228 ~~EL~~~~k~i~ 239 (423)
..........+.
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 555565555555
No 172
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=35.02 E-value=4.3e+02 Score=25.60 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=67.5
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHH--------------HHhhhc
Q 014516 118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVI--------------NMISRN 183 (423)
Q Consensus 118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll--------------~~l~~~ 183 (423)
-.+++|.++|+-..+.||-+..+...+ +++.+++.++.++..+|..--+--.|.--+ +.....
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~---~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcc---cchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 467899999999999999999888765 789999999999999998765555554322 111111
Q ss_pred cCh---hHHhHHHHH---------HHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516 184 CST---LQWIIERES---------ELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (423)
Q Consensus 184 ~~~---~~~~~~~EL---------~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (423)
..+ .-+++-.|. .+.++ .+...+-++.|+--.+.+.+++
T Consensus 164 ~~DPfR~LWLYl~E~k~dP~~A~tnL~qR-~~~~d~e~WG~~iV~~yLgkiS 214 (297)
T COG4785 164 PNDPFRSLWLYLNEQKLDPKQAKTNLKQR-AEKSDKEQWGWNIVEFYLGKIS 214 (297)
T ss_pred CCChHHHHHHHHHHhhCCHHHHHHHHHHH-HHhccHhhhhHHHHHHHHhhcc
Confidence 111 112222232 12222 3455678999988888877765
No 173
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.71 E-value=1.4e+02 Score=30.20 Aligned_cols=80 Identities=18% Similarity=0.040 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH
Q 014516 82 YKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLS 161 (423)
Q Consensus 82 Y~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~ 161 (423)
-.+|+-++..+...+++ -..+.+..+.+-+|.+.|.|..+.---+.+..... .+-++=.+..++|+
T Consensus 113 ~kEA~~Al~~A~~~~~~-----------Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~---~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKD-----------GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHN---EIVEADQCYVKALT 178 (472)
T ss_pred hHHHHHHHHHHHHHHhc-----------cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh---hhHhhhhhhheeee
Confidence 45676667666665543 23478899999999999999999888888777653 56777788889999
Q ss_pred hCCCchhHhHHHHH
Q 014516 162 YSPKSEQAWSHRRW 175 (423)
Q Consensus 162 ~nPK~y~~W~hRrw 175 (423)
+.|-+..+-..|..
T Consensus 179 isP~nseALvnR~R 192 (472)
T KOG3824|consen 179 ISPGNSEALVNRAR 192 (472)
T ss_pred eCCCchHHHhhhhc
Confidence 99999999888864
No 174
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.57 E-value=6.6e+02 Score=27.65 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=72.4
Q ss_pred ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC--chhHh-HHHHHHHHHhhhccC
Q 014516 109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK--SEQAW-SHRRWVINMISRNCS 185 (423)
Q Consensus 109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK--~y~~W-~hRrwll~~l~~~~~ 185 (423)
+...++++....++|.+.|+..+|...+=-++... ..++++|.+. .+|+. .+... .++..|.-++..
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~---~ky~~ALk~i----kk~~~~~~~~~~~fEKAYc~Yrlnk--- 94 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQL---DKYEDALKLI----KKNGALLVINSFFFEKAYCEYRLNK--- 94 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh---hHHHHHHHHH----HhcchhhhcchhhHHHHHHHHHccc---
Confidence 46678899999999999999999876555555444 3688888444 44442 22222 677777777765
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516 186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS 246 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S 246 (423)
.++.|.... .++.++++ .=.-|..++-+++. +++.++....+++-|..++.
T Consensus 95 -----~Dealk~~~-~~~~~~~~--ll~L~AQvlYrl~~--ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 95 -----LDEALKTLK-GLDRLDDK--LLELRAQVLYRLER--YDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred -----HHHHHHHHh-cccccchH--HHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCchHH
Confidence 455666655 44554421 22334455544443 66667777666666555544
No 175
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.37 E-value=4.3e+02 Score=28.98 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhCCCchhHh
Q 014516 149 LMDELHLSALVLSYSPKSEQAW 170 (423)
Q Consensus 149 ~~~EL~~~~~lL~~nPK~y~~W 170 (423)
+++.+.-++++|...|+..++.
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~ 49 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAI 49 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhH
Confidence 4444444444444444444433
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=33.33 E-value=52 Score=24.71 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=41.3
Q ss_pred CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh-------cCCCchhchHHHHHHHhcChhhHHHHHHHHH
Q 014516 163 SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER-------SKMNYRAWNHRCWLVSFMTREQVLDELKKSR 235 (423)
Q Consensus 163 nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~-------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~ 235 (423)
||.-..+++....++..++. +++.+.+++++++. +|.--.++...+.+...++. .++.+++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~ 70 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGR--------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD--YEEALEYYQ 70 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 34555677777878777665 56666666666654 22223344445666665554 778888888
Q ss_pred HHHhc
Q 014516 236 NWSGL 240 (423)
Q Consensus 236 k~i~~ 240 (423)
+.+++
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87754
No 177
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.08 E-value=2.4e+02 Score=27.52 Aligned_cols=58 Identities=10% Similarity=-0.028 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH
Q 014516 109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA 169 (423)
Q Consensus 109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~ 169 (423)
..+...+++++..+|.+||...+.|-.|..+-... ..++.-..-+..+|...|.....
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~---~~~~~v~~dcrralql~~N~vk~ 80 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL---KHWEPVEEDCRRALQLDPNLVKA 80 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh---hhhhhhhhhHHHHHhcChHHHHH
Confidence 35556666666666666666666665555544443 24455555555555555554433
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=32.32 E-value=3.2e+02 Score=26.88 Aligned_cols=70 Identities=9% Similarity=-0.010 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (423)
..+++++.+++.+..+.|.++.+.+-...+.-+++. +++.-+++..+++.+|++..+.....-+-..++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~--------~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH--------YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT---------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 467899999999988888888888877777766665 7788888999999999999988876554444444
No 179
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=29.50 E-value=1.5e+02 Score=30.41 Aligned_cols=89 Identities=10% Similarity=-0.007 Sum_probs=57.4
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
...+++++|+...+...|-+.-..-.|........ .....|-. |+.++..+--...++..|.-.-..|+.
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K--~FA~AE~D-C~~AiaLd~~Y~KAYSRR~~AR~~Lg~------- 180 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK--SFAQAEED-CEAAIALDKLYVKAYSRRMQARESLGN------- 180 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH--HHHHHHHh-HHHHHHhhHHHHHHHHHHHHHHHHHhh-------
Confidence 34689999999999999977766666766555442 12222332 344455554444566666555444544
Q ss_pred hHHHHHHHHHHHHHhcCCCc
Q 014516 190 IIERESELVEKIAERSKMNY 209 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY 209 (423)
+.+.-.-|+.+|++.|+|.
T Consensus 181 -~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 -NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred -HHHHHHhHHHHHhhCcccH
Confidence 5667778899999999854
No 180
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=28.69 E-value=6.4e+02 Score=25.81 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHccCCcCCHHHHHHH
Q 014516 78 LIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFA--TAWNSRKLIVSNKRLLPILMDELHL 155 (423)
Q Consensus 78 l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~--TaWn~Rk~lL~~~~~~~~~~~EL~~ 155 (423)
|..+|..-+.+ ..+++..+.+..+.|+.| .+-.+=-++-+......+.+.++.+
T Consensus 147 Ll~IYQ~treW------------------------~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 147 LLNIYQATREW------------------------EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHhhHH------------------------HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Q ss_pred HHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 156 SALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 156 ~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
+.++|+.+|||.-+=--..-+.-..+. ++..++..+.+++.||
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~--------y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGD--------YQKAVEALERVLEQNP 245 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccc--------hHHHHHHHHHHHHhCh
No 181
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.02 E-value=2.7e+02 Score=27.18 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCCchhHhHHHHHHHHH
Q 014516 149 LMDELHLSALVLSYSPKSEQAWSHRRWVINM 179 (423)
Q Consensus 149 ~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~ 179 (423)
+..++..+..++.+||-...-|..|..+-.+
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk 56 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLK 56 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHH
Confidence 4445555555555555555555555444433
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=27.84 E-value=3.6e+02 Score=22.43 Aligned_cols=153 Identities=17% Similarity=0.051 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHccCCcCCHHHHHHHHHHHHHhCCC---chhHhHHHHHHHHHhhhccChh
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKL-IVSNKRLLPILMDELHLSALVLSYSPK---SEQAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~-lL~~~~~~~~~~~EL~~~~~lL~~nPK---~y~~W~hRrwll~~l~~~~~~~ 187 (423)
...++.....++..+++....+.+... +....+ .+...+.....++..+|. .......+.......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 180 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELG---DYEEALELYEKALELDPELNELAEALLALGALLEAL------- 180 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh-------
Confidence 457778888888888887666666666 555554 678888888888777763 222222222221111
Q ss_pred HHhHHHHHHHHHHHHHhcCC-CchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccC
Q 014516 188 QWIIERESELVEKIAERSKM-NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQ 266 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pk-NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~ 266 (423)
......+....+++...+. ...++..........+ .+...+....+.+...+.....+......+. ...
T Consensus 181 -~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------ 250 (291)
T COG0457 181 -GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG--KYEEALEYYEKALELDPDNAEALYNLALLLL-ELG------ 250 (291)
T ss_pred -cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc--cHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcC------
Confidence 1267788888999999998 5777777766666554 2677888888888888886666666665554 211
Q ss_pred CCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516 267 DNNSSGYFVETYQIWKEELDWNESLIKQYVG 297 (423)
Q Consensus 267 ~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ 297 (423)
.+.+........+..+|.
T Consensus 251 -------------~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 -------------RYEEALEALEKALELDPD 268 (291)
T ss_pred -------------CHHHHHHHHHHHHHhCcc
Confidence 245566677777887777
No 183
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=27.69 E-value=1.2e+02 Score=16.81 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=21.4
Q ss_pred hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (423)
Q Consensus 168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (423)
.+|..+..++..... ++........+++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~--------~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGD--------YDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhh--------HHHHHHHHHHHHccCCC
Confidence 355666666665544 56777788888888775
No 184
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.60 E-value=3.2e+02 Score=21.86 Aligned_cols=50 Identities=10% Similarity=-0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc
Q 014516 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS 166 (423)
Q Consensus 114 ~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~ 166 (423)
..+......+..||++..+-..-...+...+ .+++.++.+-.++..++..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g---~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAG---DYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCccc
Confidence 3456678888999999998888887777665 6888888888888877653
No 185
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=27.41 E-value=2.3e+02 Score=29.17 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
..+++++.+.+..+...|-++-....|.-...++.. +-..| .-|+.++.+|-+---|++.|.-.-..++.
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-------FA~AE-~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~-- 180 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-------FAQAE-EDCEAAIALDKLYVKAYSRRMQARESLGN-- 180 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-------HHHHH-HhHHHHHHhhHHHHHHHHHHHHHHHHHhh--
Confidence 479999999999999999999999999888777654 12223 45677888888777888888766555543
Q ss_pred HHHHHHHHHHHHhccCCChh
Q 014516 227 VLDELKKSRNWSGLHVADNS 246 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~S 246 (423)
..+.-+.++..+.+.|.+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 56667788888888888654
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=26.51 E-value=4.5e+02 Score=23.23 Aligned_cols=99 Identities=10% Similarity=-0.121 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhh------
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISR------ 182 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~------ 182 (423)
..++.+..+.+..--|-.-.+=..+-.+.-.......+..++.-.+..++.||.++ -++..|+..--....
T Consensus 26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~ 105 (142)
T PF13512_consen 26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSF 105 (142)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhh
Confidence 35566666666666666555555544444332223468889999999999888876 456666543332221
Q ss_pred --ccChhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516 183 --NCSTLQWIIERESELVEKIAERSKMNYRA 211 (423)
Q Consensus 183 --~~~~~~~~~~~EL~~~~~~l~~~pkNY~A 211 (423)
...+ +......+.-....++++|++-+|
T Consensus 106 ~~~drD-~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 106 FRSDRD-PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred cccccC-cHHHHHHHHHHHHHHHHCcCChhH
Confidence 1111 223567777788888888876554
No 187
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=25.49 E-value=71 Score=20.53 Aligned_cols=10 Identities=10% Similarity=-0.041 Sum_probs=7.8
Q ss_pred ccCCChhHHH
Q 014516 240 LHVADNSCFH 249 (423)
Q Consensus 240 ~d~~N~SaW~ 249 (423)
....|||+|-
T Consensus 12 ~~~~NFSaWV 21 (30)
T PF13132_consen 12 EGSGNFSAWV 21 (30)
T ss_pred ccCcChHHHH
Confidence 4588999994
No 188
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.77 E-value=2.6e+02 Score=28.63 Aligned_cols=81 Identities=20% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhhHHH--HHHHHHHHHHHHHh-------------hcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 014516 76 QILIPV--YKAAKHAFISALRQ-------------YKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV 140 (423)
Q Consensus 76 ~~l~~l--Y~~A~~~f~~~l~~-------------y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL 140 (423)
+|+..+ |+.|...|...+.+ |.+..-. .++|..+...|..-|.+.|.----.++-
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP----------~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQP----------ERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccH----------HHHHHHHhhhhhcCCchhhhhhhhHHHH
Q ss_pred HccCCcCCHHHHHHHHHHHHHhCCCchhH
Q 014516 141 SNKRLLPILMDELHLSALVLSYSPKSEQA 169 (423)
Q Consensus 141 ~~~~~~~~~~~EL~~~~~lL~~nPK~y~~ 169 (423)
+.++ ..++.+++...+|..+|-+.++
T Consensus 301 eam~---~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 301 EAME---QQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred HHHH---hHHHHHHHHHHHHhcCCcccee
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=24.49 E-value=4.4e+02 Score=22.36 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=66.8
Q ss_pred HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC-
Q 014516 132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM- 207 (423)
Q Consensus 132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk- 207 (423)
++..+.......| ..++++.+...++...+... .++--....+..++. +++.+.+..+.+..+|.
T Consensus 3 ~~~~~A~a~d~~G---~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~--------~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 3 ALYELAWAHDSLG---REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR--------YDEALALLEEALEEFPDD 71 (120)
T ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCc
Confidence 4455666666766 67888999999998655543 344444455555554 68888999999999888
Q ss_pred --CchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 208 --NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 208 --NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
+-..+....-++..++. ..+.+..+-..+.-+.. .|++-+
T Consensus 72 ~~~~~l~~f~Al~L~~~gr--~~eAl~~~l~~la~~~~-----~y~ra~ 113 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGR--PKEALEWLLEALAETLP-----RYRRAI 113 (120)
T ss_pred cccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 55555555555555554 45666666555543333 555544
No 190
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=22.85 E-value=1.8e+02 Score=21.04 Aligned_cols=29 Identities=24% Similarity=0.091 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIV 140 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL 140 (423)
..++++..+.+|.+.|+|.+|=..+..+=
T Consensus 17 Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 17 YEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 47899999999999999999988877654
No 191
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=22.77 E-value=68 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHH
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCW 217 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~w 217 (423)
+.=.+.+++++..+|.+|. |.|++|
T Consensus 167 ~~~~~~lE~~i~~~P~qw~-w~~~rw 191 (192)
T cd07984 167 QRLNDALEAAIREHPEQWL-WFHRRW 191 (192)
T ss_pred HHHHHHHHHHHHhCchhhe-eehhhC
Confidence 3333578899999998885 999998
No 192
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.92 E-value=56 Score=31.97 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCchhHhHHHHH
Q 014516 154 HLSALVLSYSPKSEQAWSHRRW 175 (423)
Q Consensus 154 ~~~~~lL~~nPK~y~~W~hRrw 175 (423)
+.++..+..+|..+ .|.||||
T Consensus 258 ~~lE~~Ir~~P~QW-~W~h~Rw 278 (289)
T PRK08706 258 RFIEERVREHPEQY-FWLHKRF 278 (289)
T ss_pred HHHHHHHHcCcHHH-HHHHHhc
Confidence 34555677999876 7999999
No 193
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.30 E-value=1.5e+02 Score=17.45 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCCchhHhHHH
Q 014516 149 LMDELHLSALVLSYSPKSEQAWSHR 173 (423)
Q Consensus 149 ~~~EL~~~~~lL~~nPK~y~~W~hR 173 (423)
.+..-.+.+.++...|.+..+|..-
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4556677888888899888888643
No 194
>PRK13683 hypothetical protein; Provisional
Probab=20.04 E-value=84 Score=25.34 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.3
Q ss_pred cchhhHHHHHHHHHHhhcc-CCCCCcc
Q 014516 8 YTEAEALNLLAQLERILDL-DPLIDEV 33 (423)
Q Consensus 8 ~~~~~~~~l~~~~~~~l~~-dp~idEv 33 (423)
-..+|++.+|++|-..+.+ +|.+-|+
T Consensus 20 Ke~edA~alYq~I~~am~sg~P~llEL 46 (87)
T PRK13683 20 KEAEDAEALYQQIRQAMRSGNPRLLEL 46 (87)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3568999999999999998 8866544
Done!