Query 014516
Match_columns 423
No_of_seqs 343 out of 1103
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dra_A Protein farnesyltransfe 100.0 2.4E-50 8.1E-55 398.2 27.0 281 74-422 24-305 (306)
2 3q7a_A Farnesyltransferase alp 100.0 3.8E-51 1.3E-55 409.6 19.7 322 22-422 21-349 (349)
3 3dss_A Geranylgeranyl transfer 100.0 6.8E-46 2.3E-50 369.6 28.8 282 79-417 26-316 (331)
4 1dce_A Protein (RAB geranylger 100.0 6.6E-37 2.2E-41 325.6 23.4 209 77-311 23-238 (567)
5 3q7a_A Farnesyltransferase alp 100.0 6.4E-35 2.2E-39 292.1 17.0 211 123-382 47-258 (349)
6 3dss_A Geranylgeranyl transfer 100.0 6.7E-34 2.3E-38 283.2 20.3 194 148-379 45-240 (331)
7 1dce_A Protein (RAB geranylger 100.0 1.7E-30 6E-35 276.2 22.7 195 149-381 45-241 (567)
8 3dra_A Protein farnesyltransfe 100.0 8.9E-31 3.1E-35 258.3 18.3 200 128-381 31-235 (306)
9 2h6f_A Protein farnesyltransfe 99.9 9.2E-27 3.1E-31 236.1 21.9 274 71-420 85-363 (382)
10 2h6f_A Protein farnesyltransfe 99.8 2.4E-20 8.3E-25 188.9 15.3 200 121-379 88-287 (382)
11 2pl2_A Hypothetical conserved 99.3 6.5E-10 2.2E-14 102.0 21.7 173 111-309 20-195 (217)
12 3vtx_A MAMA; tetratricopeptide 99.3 4.2E-10 1.4E-14 99.1 18.8 154 112-298 21-174 (184)
13 3vtx_A MAMA; tetratricopeptide 99.1 7.6E-09 2.6E-13 90.9 19.7 151 127-310 2-152 (184)
14 4gco_A Protein STI-1; structur 99.1 1.4E-09 4.7E-14 91.8 12.7 121 121-254 4-124 (126)
15 4i17_A Hypothetical protein; T 99.0 2.3E-08 7.8E-13 91.1 20.0 184 111-307 22-222 (228)
16 4gyw_A UDP-N-acetylglucosamine 99.0 9.2E-09 3.1E-13 112.1 19.5 153 125-310 4-156 (723)
17 2pl2_A Hypothetical conserved 99.0 4.4E-08 1.5E-12 89.6 21.1 149 127-309 2-161 (217)
18 1w3b_A UDP-N-acetylglucosamine 99.0 5.5E-08 1.9E-12 95.5 22.9 133 112-257 83-215 (388)
19 4abn_A Tetratricopeptide repea 99.0 2.2E-08 7.7E-13 103.1 20.2 179 110-312 117-305 (474)
20 2pzi_A Probable serine/threoni 99.0 3.4E-09 1.2E-13 114.4 13.8 166 110-309 405-578 (681)
21 1w3b_A UDP-N-acetylglucosamine 99.0 1.3E-07 4.5E-12 92.7 24.1 196 81-309 82-281 (388)
22 3hym_B Cell division cycle pro 98.9 3.1E-07 1.1E-11 86.6 25.1 198 80-309 36-246 (330)
23 4gyw_A UDP-N-acetylglucosamine 98.9 4.5E-08 1.6E-12 106.6 20.9 136 111-259 24-159 (723)
24 2vq2_A PILW, putative fimbrial 98.9 2.7E-07 9.2E-12 82.1 21.9 162 111-305 23-188 (225)
25 4abn_A Tetratricopeptide repea 98.9 2.3E-07 7.7E-12 95.5 23.9 175 112-310 84-269 (474)
26 4i17_A Hypothetical protein; T 98.9 2.1E-07 7.1E-12 84.6 21.0 155 127-314 4-168 (228)
27 4eqf_A PEX5-related protein; a 98.9 1.5E-07 5.3E-12 91.3 21.4 166 112-310 81-258 (365)
28 2q7f_A YRRB protein; TPR, prot 98.9 7.3E-08 2.5E-12 87.2 17.9 165 112-309 39-203 (243)
29 3urz_A Uncharacterized protein 98.9 3.4E-08 1.2E-12 89.8 15.5 157 111-299 19-191 (208)
30 3hym_B Cell division cycle pro 98.9 3.8E-07 1.3E-11 86.1 23.4 189 111-358 106-303 (330)
31 2q7f_A YRRB protein; TPR, prot 98.9 1.3E-07 4.4E-12 85.6 18.6 166 111-309 72-237 (243)
32 4eqf_A PEX5-related protein; a 98.8 1.1E-07 3.7E-12 92.4 17.9 197 81-310 80-292 (365)
33 4gco_A Protein STI-1; structur 98.8 3.7E-08 1.3E-12 82.9 12.1 121 158-308 4-124 (126)
34 4ga2_A E3 SUMO-protein ligase 98.8 2.7E-08 9.2E-13 86.1 11.0 134 111-257 12-146 (150)
35 2xpi_A Anaphase-promoting comp 98.8 1.9E-06 6.5E-11 89.0 26.8 235 111-421 354-595 (597)
36 3ieg_A DNAJ homolog subfamily 98.8 6.6E-07 2.3E-11 85.1 20.7 171 113-308 20-231 (359)
37 3u4t_A TPR repeat-containing p 98.8 2.9E-07 9.9E-12 85.1 17.4 165 111-310 18-187 (272)
38 3ieg_A DNAJ homolog subfamily 98.8 3.5E-06 1.2E-10 80.0 25.4 139 111-254 52-231 (359)
39 2ond_A Cleavage stimulation fa 98.7 5.5E-07 1.9E-11 86.6 19.3 165 113-308 33-212 (308)
40 3mkr_A Coatomer subunit epsilo 98.7 2.3E-06 7.9E-11 82.2 23.4 164 111-310 80-245 (291)
41 3cv0_A Peroxisome targeting si 98.7 1.5E-06 5.2E-11 81.7 21.6 167 112-309 37-216 (327)
42 2vq2_A PILW, putative fimbrial 98.7 1.5E-06 5E-11 77.2 19.9 163 111-306 57-223 (225)
43 3fp2_A TPR repeat-containing p 98.7 1.4E-06 4.7E-11 88.5 22.1 162 111-306 258-419 (537)
44 2vsy_A XCC0866; transferase, g 98.7 3.8E-07 1.3E-11 95.2 18.4 163 112-304 5-167 (568)
45 3uq3_A Heat shock protein STI1 98.7 5.6E-07 1.9E-11 81.7 17.0 161 111-304 53-252 (258)
46 2ho1_A Type 4 fimbrial biogene 98.7 1.4E-06 4.9E-11 79.5 19.8 165 112-309 53-219 (252)
47 2ho1_A Type 4 fimbrial biogene 98.7 1.6E-06 5.3E-11 79.3 20.0 162 111-305 86-249 (252)
48 1fch_A Peroxisomal targeting s 98.7 1.6E-06 5.6E-11 83.5 21.1 91 112-213 80-170 (368)
49 2xpi_A Anaphase-promoting comp 98.7 1.4E-06 4.9E-11 89.9 22.0 167 111-310 388-561 (597)
50 1fch_A Peroxisomal targeting s 98.7 2E-06 6.8E-11 82.9 21.4 196 81-310 79-296 (368)
51 3uq3_A Heat shock protein STI1 98.7 9.7E-07 3.3E-11 80.1 18.1 174 111-310 20-218 (258)
52 2y4t_A DNAJ homolog subfamily 98.7 1.8E-06 6E-11 85.8 21.0 167 112-311 193-375 (450)
53 3gyz_A Chaperone protein IPGC; 98.7 1.1E-07 3.8E-12 83.2 10.6 113 119-244 25-137 (151)
54 3as5_A MAMA; tetratricopeptide 98.7 1.2E-06 4E-11 75.1 17.1 156 112-300 24-179 (186)
55 4ga2_A E3 SUMO-protein ligase 98.7 1.9E-07 6.7E-12 80.6 12.0 134 147-310 11-145 (150)
56 2y4t_A DNAJ homolog subfamily 98.7 3.3E-06 1.1E-10 83.8 22.5 167 111-310 158-340 (450)
57 3cv0_A Peroxisome targeting si 98.6 1.8E-06 6E-11 81.3 18.7 200 81-309 36-250 (327)
58 2vgx_A Chaperone SYCD; alterna 98.6 5.6E-07 1.9E-11 77.7 13.9 122 119-253 10-131 (148)
59 4g1t_A Interferon-induced prot 98.6 1.8E-06 6.3E-11 86.5 19.4 223 81-310 109-345 (472)
60 1xnf_A Lipoprotein NLPI; TPR, 98.6 3E-06 1E-10 78.0 19.0 158 112-303 21-182 (275)
61 2gw1_A Mitochondrial precursor 98.6 1.8E-06 6.1E-11 86.9 18.4 165 112-309 320-493 (514)
62 3upv_A Heat shock protein STI1 98.6 1.1E-06 3.8E-11 72.3 13.9 118 127-257 1-124 (126)
63 2ond_A Cleavage stimulation fa 98.6 4.5E-06 1.5E-10 80.1 19.9 164 112-308 80-250 (308)
64 3qky_A Outer membrane assembly 98.6 1.3E-05 4.3E-10 74.5 22.2 180 111-305 30-235 (261)
65 2xcb_A PCRH, regulatory protei 98.6 5E-07 1.7E-11 76.7 11.3 124 118-254 6-129 (142)
66 4g1t_A Interferon-induced prot 98.6 1.3E-05 4.4E-10 80.3 23.5 204 80-309 65-291 (472)
67 3fp2_A TPR repeat-containing p 98.5 2.8E-06 9.5E-11 86.3 18.2 178 110-310 290-473 (537)
68 2gw1_A Mitochondrial precursor 98.5 6.7E-06 2.3E-10 82.6 20.7 165 111-309 252-422 (514)
69 3sz7_A HSC70 cochaperone (SGT) 98.5 2.1E-06 7.1E-11 74.3 14.4 117 126-255 7-123 (164)
70 3u4t_A TPR repeat-containing p 98.5 1.8E-06 6.1E-11 79.6 14.5 168 111-310 89-266 (272)
71 2pzi_A Probable serine/threoni 98.5 3.7E-07 1.3E-11 98.4 9.8 132 111-256 448-579 (681)
72 3gyz_A Chaperone protein IPGC; 98.4 1.3E-06 4.4E-11 76.3 11.0 113 157-299 26-138 (151)
73 3urz_A Uncharacterized protein 98.4 1.7E-05 5.9E-10 71.7 18.1 115 130-257 4-134 (208)
74 2vgx_A Chaperone SYCD; alterna 98.4 6.8E-06 2.3E-10 70.7 13.9 124 155-308 9-132 (148)
75 1xnf_A Lipoprotein NLPI; TPR, 98.4 0.0001 3.5E-09 67.5 22.8 127 111-251 58-184 (275)
76 2e2e_A Formate-dependent nitri 98.3 8.6E-06 2.9E-10 70.8 13.4 126 112-250 26-154 (177)
77 2ooe_A Cleavage stimulation fa 98.3 2.5E-05 8.7E-10 80.5 19.2 164 113-308 255-434 (530)
78 3mkr_A Coatomer subunit epsilo 98.3 4.4E-05 1.5E-09 73.2 19.4 159 111-304 116-274 (291)
79 1p5q_A FKBP52, FK506-binding p 98.3 2E-06 6.9E-11 84.4 10.2 133 113-258 130-277 (336)
80 3qky_A Outer membrane assembly 98.3 0.00021 7.2E-09 66.1 23.1 157 123-310 8-196 (261)
81 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.8E-06 6E-11 88.6 9.4 132 114-258 252-398 (457)
82 2vyi_A SGTA protein; chaperone 98.3 2E-05 6.8E-10 63.3 13.9 121 125-258 7-127 (131)
83 2lni_A Stress-induced-phosphop 98.3 1.4E-05 4.9E-10 64.8 13.1 119 126-257 12-130 (133)
84 2xcb_A PCRH, regulatory protei 98.3 8.8E-06 3E-10 68.8 12.1 125 155-309 6-130 (142)
85 3as5_A MAMA; tetratricopeptide 98.3 3.9E-05 1.3E-09 65.3 16.3 147 130-309 8-154 (186)
86 3upv_A Heat shock protein STI1 98.2 1.7E-05 5.8E-10 65.0 13.1 116 164-309 1-122 (126)
87 3sz7_A HSC70 cochaperone (SGT) 98.2 1.4E-05 4.9E-10 68.9 12.6 98 111-219 26-123 (164)
88 3q49_B STIP1 homology and U bo 98.2 3E-05 1E-09 63.9 13.8 120 124-256 3-127 (137)
89 2hr2_A Hypothetical protein; a 98.2 6.8E-06 2.3E-10 72.9 10.0 114 129-255 10-146 (159)
90 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00036 1.2E-08 63.4 22.0 167 111-300 19-219 (225)
91 1elw_A TPR1-domain of HOP; HOP 98.2 8E-05 2.7E-09 58.6 15.0 113 129-254 3-115 (118)
92 2kck_A TPR repeat; tetratricop 98.2 1.3E-05 4.4E-10 62.8 10.1 108 125-245 1-111 (112)
93 2e2e_A Formate-dependent nitri 98.2 2.8E-05 9.6E-10 67.5 13.2 133 148-308 25-158 (177)
94 2fo7_A Synthetic consensus TPR 98.1 0.00021 7.3E-09 57.0 17.2 134 131-297 2-135 (136)
95 2vsy_A XCC0866; transferase, g 98.1 3.9E-05 1.3E-09 80.0 15.9 127 112-251 39-168 (568)
96 3qou_A Protein YBBN; thioredox 98.1 8E-05 2.7E-09 71.0 16.6 153 125-310 112-266 (287)
97 2dba_A Smooth muscle cell asso 98.1 7.7E-05 2.6E-09 61.6 14.6 118 124-254 22-142 (148)
98 2r5s_A Uncharacterized protein 98.1 3.5E-05 1.2E-09 67.4 13.0 135 111-258 21-157 (176)
99 2ooe_A Cleavage stimulation fa 98.1 0.00012 4E-09 75.5 18.7 159 113-304 303-468 (530)
100 2fo7_A Synthetic consensus TPR 98.1 0.00012 4.1E-09 58.5 14.9 120 112-244 17-136 (136)
101 2hr2_A Hypothetical protein; a 98.1 1.4E-05 4.9E-10 70.7 10.0 92 111-213 26-140 (159)
102 1a17_A Serine/threonine protei 98.1 9.9E-05 3.4E-09 62.2 15.0 115 111-236 28-142 (166)
103 3rkv_A Putative peptidylprolyl 98.1 5.2E-05 1.8E-09 65.1 13.0 117 129-258 10-145 (162)
104 1a17_A Serine/threonine protei 98.1 0.00025 8.6E-09 59.7 17.1 113 129-254 12-124 (166)
105 1hxi_A PEX5, peroxisome target 98.0 4.2E-05 1.4E-09 63.3 11.6 87 112-209 33-119 (121)
106 2c2l_A CHIP, carboxy terminus 98.0 0.00012 4E-09 69.6 16.0 160 111-308 19-178 (281)
107 3qou_A Protein YBBN; thioredox 98.0 0.00011 3.6E-09 70.1 15.4 136 110-258 131-268 (287)
108 1hxi_A PEX5, peroxisome target 98.0 6.3E-05 2.1E-09 62.2 11.6 101 132-245 19-119 (121)
109 1na0_A Designed protein CTPR3; 98.0 0.00031 1.1E-08 55.5 15.4 119 125-256 3-122 (125)
110 2vyi_A SGTA protein; chaperone 98.0 0.00016 5.4E-09 57.8 13.4 102 111-223 27-128 (131)
111 2r5s_A Uncharacterized protein 98.0 4.2E-05 1.4E-09 66.9 10.5 152 126-310 2-155 (176)
112 3q49_B STIP1 homology and U bo 98.0 0.00023 7.8E-09 58.4 14.5 119 162-310 4-127 (137)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.0 0.00026 9E-09 62.7 15.9 120 112-247 22-157 (213)
114 1p5q_A FKBP52, FK506-binding p 98.0 0.00013 4.4E-09 71.4 15.0 103 111-224 162-279 (336)
115 1qqe_A Vesicular transport pro 97.9 0.00022 7.5E-09 67.8 15.9 180 82-304 33-238 (292)
116 1zu2_A Mitochondrial import re 97.9 4.7E-05 1.6E-09 67.4 10.1 100 112-211 18-127 (158)
117 2lni_A Stress-induced-phosphop 97.9 0.00014 4.7E-09 58.7 12.2 99 112-221 32-130 (133)
118 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9E-05 3.1E-09 75.8 13.2 158 122-311 216-397 (457)
119 2c2l_A CHIP, carboxy terminus 97.9 0.0002 6.7E-09 68.1 14.6 106 127-245 1-106 (281)
120 1wao_1 Serine/threonine protei 97.8 3.7E-05 1.3E-09 79.2 9.3 115 110-235 20-134 (477)
121 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00033 1.1E-08 62.1 14.2 117 129-258 37-169 (198)
122 1elw_A TPR1-domain of HOP; HOP 97.8 0.00031 1.1E-08 55.1 12.4 97 111-218 19-115 (118)
123 4gcn_A Protein STI-1; structur 97.8 0.00013 4.3E-09 60.8 10.3 105 128-243 6-115 (127)
124 3rkv_A Putative peptidylprolyl 97.8 0.00015 5.3E-09 62.1 10.9 97 112-219 27-142 (162)
125 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.002 6.8E-08 58.4 18.9 166 130-309 4-194 (225)
126 2if4_A ATFKBP42; FKBP-like, al 97.8 2.7E-05 9.3E-10 76.4 6.7 143 125-299 174-333 (338)
127 1zu2_A Mitochondrial import re 97.8 0.00037 1.3E-08 61.5 13.2 105 148-252 17-132 (158)
128 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.00055 1.9E-08 60.6 14.5 133 133-301 9-157 (213)
129 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00016 5.4E-09 70.8 11.8 122 111-244 194-332 (338)
130 2dba_A Smooth muscle cell asso 97.7 0.00058 2E-08 56.2 13.5 117 162-308 23-142 (148)
131 2kck_A TPR repeat; tetratricop 97.7 0.00021 7E-09 55.7 10.2 107 163-299 2-111 (112)
132 1elr_A TPR2A-domain of HOP; HO 97.7 0.00095 3.3E-08 53.2 13.7 118 127-258 1-125 (131)
133 3k9i_A BH0479 protein; putativ 97.7 0.00013 4.5E-09 59.3 7.9 96 113-219 7-105 (117)
134 1na0_A Designed protein CTPR3; 97.6 0.0013 4.4E-08 51.8 13.4 99 111-220 24-122 (125)
135 2xev_A YBGF; tetratricopeptide 97.6 0.0018 6.1E-08 52.3 14.3 98 111-219 17-120 (129)
136 4gcn_A Protein STI-1; structur 97.6 0.00028 9.7E-09 58.6 9.2 93 111-207 23-115 (127)
137 1ihg_A Cyclophilin 40; ppiase 97.6 0.00059 2E-08 67.9 12.8 117 129-258 222-354 (370)
138 1wao_1 Serine/threonine protei 97.6 3E-05 1E-09 80.0 3.2 98 147-254 20-117 (477)
139 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0012 3.9E-08 58.5 12.9 101 111-222 53-169 (198)
140 2xev_A YBGF; tetratricopeptide 97.5 0.0022 7.6E-08 51.7 13.7 108 134-254 6-119 (129)
141 3edt_B KLC 2, kinesin light ch 97.5 0.0015 5.2E-08 59.2 13.9 160 115-307 27-220 (283)
142 2kat_A Uncharacterized protein 97.4 0.00078 2.7E-08 54.1 9.7 86 114-210 3-88 (115)
143 3k9i_A BH0479 protein; putativ 97.4 0.0002 6.8E-09 58.2 6.1 99 148-256 5-106 (117)
144 1qqe_A Vesicular transport pro 97.4 0.00084 2.9E-08 63.7 11.2 165 111-303 92-278 (292)
145 1ihg_A Cyclophilin 40; ppiase 97.3 0.0027 9.2E-08 63.1 13.9 102 111-223 238-355 (370)
146 2kat_A Uncharacterized protein 97.2 0.0042 1.5E-07 49.6 11.2 98 151-258 3-102 (115)
147 3nf1_A KLC 1, kinesin light ch 97.1 0.0072 2.4E-07 55.8 14.1 165 112-309 43-248 (311)
148 2l6j_A TPR repeat-containing p 97.1 0.0034 1.1E-07 49.0 10.0 69 129-208 3-71 (111)
149 1na3_A Designed protein CTPR2; 97.1 0.0045 1.5E-07 46.5 10.4 82 128-220 7-88 (91)
150 3nf1_A KLC 1, kinesin light ch 97.1 0.0049 1.7E-07 56.9 12.5 132 111-255 84-248 (311)
151 1elr_A TPR2A-domain of HOP; HO 97.1 0.01 3.5E-07 47.0 12.6 114 165-309 2-122 (131)
152 3ma5_A Tetratricopeptide repea 97.1 0.0019 6.5E-08 51.0 8.0 75 125-210 2-76 (100)
153 1ouv_A Conserved hypothetical 97.0 0.11 3.7E-06 47.6 20.7 163 111-309 21-192 (273)
154 3edt_B KLC 2, kinesin light ch 97.0 0.01 3.4E-07 53.7 13.2 131 111-254 58-221 (283)
155 3sf4_A G-protein-signaling mod 96.9 0.017 5.8E-07 55.4 14.6 118 112-240 25-176 (406)
156 4a1s_A PINS, partner of inscut 96.8 0.012 4.1E-07 57.1 13.0 159 111-300 63-258 (411)
157 3ro2_A PINS homolog, G-protein 96.7 0.062 2.1E-06 49.4 16.8 159 111-300 20-218 (338)
158 2kc7_A BFR218_protein; tetratr 96.7 0.0045 1.5E-07 47.8 7.4 57 148-212 15-72 (99)
159 1na3_A Designed protein CTPR2; 96.7 0.013 4.3E-07 43.9 9.7 83 165-257 7-89 (91)
160 2kc7_A BFR218_protein; tetratr 96.7 0.0055 1.9E-07 47.3 7.6 58 112-172 16-74 (99)
161 1ouv_A Conserved hypothetical 96.6 0.14 4.8E-06 46.8 18.4 147 126-309 2-156 (273)
162 3ma5_A Tetratricopeptide repea 96.6 0.0053 1.8E-07 48.4 7.3 73 162-244 2-74 (100)
163 2ifu_A Gamma-SNAP; membrane fu 96.6 0.03 1E-06 53.2 13.8 158 112-304 52-233 (307)
164 3ulq_A Response regulator aspa 96.5 0.028 9.7E-07 54.6 13.5 154 111-297 118-296 (383)
165 2l6j_A TPR repeat-containing p 96.5 0.018 6.2E-07 44.7 9.7 83 166-258 3-91 (111)
166 3sf4_A G-protein-signaling mod 96.2 0.05 1.7E-06 52.0 12.7 154 112-298 163-340 (406)
167 4a1s_A PINS, partner of inscut 96.0 0.078 2.7E-06 51.3 13.6 154 126-295 44-213 (411)
168 3ro2_A PINS homolog, G-protein 95.9 0.057 1.9E-06 49.6 11.1 153 112-297 159-335 (338)
169 2qfc_A PLCR protein; TPR, HTH, 95.4 1.7 5.9E-05 40.2 20.7 135 111-258 90-249 (293)
170 4f3v_A ESX-1 secretion system 95.3 0.047 1.6E-06 52.5 8.3 167 111-304 21-246 (282)
171 3ulq_A Response regulator aspa 95.1 0.28 9.5E-06 47.4 13.4 146 131-309 104-274 (383)
172 3u3w_A Transcriptional activat 95.0 0.6 2E-05 43.4 15.0 134 112-258 91-249 (293)
173 4e6h_A MRNA 3'-END-processing 94.1 1.3 4.3E-05 47.6 16.9 164 113-308 326-514 (679)
174 3ly7_A Transcriptional activat 94.1 1.6 5.3E-05 43.5 16.3 155 121-299 185-344 (372)
175 2qfc_A PLCR protein; TPR, HTH, 94.0 2.8 9.7E-05 38.7 17.4 143 126-297 71-228 (293)
176 3ly7_A Transcriptional activat 94.0 0.53 1.8E-05 46.8 12.6 124 110-245 213-344 (372)
177 3bee_A Putative YFRE protein; 94.0 0.35 1.2E-05 37.9 9.3 74 126-207 2-75 (93)
178 3q15_A PSP28, response regulat 93.8 1.3 4.3E-05 42.7 14.8 153 112-297 117-293 (378)
179 3gw4_A Uncharacterized protein 93.1 2 6.7E-05 36.4 13.6 104 125-241 20-137 (203)
180 2ifu_A Gamma-SNAP; membrane fu 92.9 0.47 1.6E-05 44.7 10.0 125 111-250 91-233 (307)
181 3rjv_A Putative SEL1 repeat pr 92.1 3.3 0.00011 36.5 14.1 166 113-309 3-172 (212)
182 3ro3_A PINS homolog, G-protein 91.6 2.8 9.7E-05 33.3 12.1 98 131-241 10-119 (164)
183 3u3w_A Transcriptional activat 91.6 0.83 2.8E-05 42.4 9.7 117 111-239 130-265 (293)
184 3bee_A Putative YFRE protein; 91.5 0.66 2.2E-05 36.3 7.6 55 109-166 22-76 (93)
185 3ro3_A PINS homolog, G-protein 90.3 1.8 6.1E-05 34.5 9.5 116 112-240 25-158 (164)
186 3q15_A PSP28, response regulat 90.2 2.4 8.2E-05 40.7 11.9 150 81-243 116-293 (378)
187 3rjv_A Putative SEL1 repeat pr 89.3 11 0.00036 33.1 15.9 168 112-304 34-205 (212)
188 3e4b_A ALGK; tetratricopeptide 88.8 6.6 0.00023 39.1 14.3 161 118-309 167-328 (452)
189 2xm6_A Protein corresponding t 88.7 18 0.00062 35.8 17.6 165 111-304 274-445 (490)
190 4f3v_A ESX-1 secretion system 88.3 1.5 5.1E-05 41.9 8.6 118 112-243 118-240 (282)
191 1hz4_A MALT regulatory protein 87.4 14 0.00049 34.6 15.2 120 112-244 30-168 (373)
192 3gw4_A Uncharacterized protein 86.9 4.7 0.00016 34.0 10.3 115 113-240 43-176 (203)
193 3e4b_A ALGK; tetratricopeptide 84.8 32 0.0011 34.0 17.3 168 111-309 194-364 (452)
194 4e6h_A MRNA 3'-END-processing 81.4 35 0.0012 36.3 16.2 131 113-255 360-515 (679)
195 1pc2_A Mitochondria fission pr 80.8 19 0.00064 31.0 11.3 97 158-261 23-121 (152)
196 1pc2_A Mitochondria fission pr 80.3 13 0.00046 31.9 10.2 93 120-220 22-116 (152)
197 3mv2_B Coatomer subunit epsilo 80.1 36 0.0012 32.7 14.3 157 111-304 115-292 (310)
198 2xm6_A Protein corresponding t 74.5 68 0.0023 31.5 20.2 169 113-310 240-410 (490)
199 1hz4_A MALT regulatory protein 73.9 57 0.002 30.3 14.6 97 132-241 16-123 (373)
200 3u64_A Protein TP_0956; tetrat 63.2 37 0.0013 32.5 9.7 90 111-208 178-273 (301)
201 2v5f_A Prolyl 4-hydroxylase su 59.2 57 0.002 24.9 9.9 48 128-178 44-91 (104)
202 2v5f_A Prolyl 4-hydroxylase su 58.8 56 0.0019 24.9 8.7 65 147-219 19-90 (104)
203 3u64_A Protein TP_0956; tetrat 57.7 68 0.0023 30.7 10.5 125 119-248 141-277 (301)
204 1xi4_A Clathrin heavy chain; a 51.5 3.6E+02 0.012 31.7 19.9 32 279-310 1294-1325(1630)
205 3n71_A Histone lysine methyltr 48.0 1.6E+02 0.0056 29.7 12.4 110 75-206 299-424 (490)
206 3mv2_B Coatomer subunit epsilo 45.3 2.1E+02 0.0071 27.2 13.8 117 116-243 86-210 (310)
207 3o48_A Mitochondria fission 1 40.5 1.6E+02 0.0055 24.6 11.0 87 127-222 38-125 (134)
208 1xi4_A Clathrin heavy chain; a 39.3 5.1E+02 0.018 30.4 15.4 104 131-258 1196-1327(1630)
209 3qww_A SET and MYND domain-con 38.7 93 0.0032 31.0 8.6 86 112-208 314-415 (433)
210 1y8m_A FIS1; mitochondria, unk 38.0 92 0.0031 26.4 7.1 66 110-181 56-125 (144)
211 1nzn_A CGI-135 protein, fissio 28.0 1.9E+02 0.0065 23.8 7.3 65 111-181 53-122 (126)
212 2uy1_A Cleavage stimulation fa 27.5 4.6E+02 0.016 26.0 14.7 57 112-172 195-251 (493)
213 1b89_A Protein (clathrin heavy 26.1 1.2E+02 0.0039 30.7 6.7 140 129-310 121-293 (449)
214 1nzn_A CGI-135 protein, fissio 25.3 2.8E+02 0.0096 22.7 8.7 86 129-222 35-121 (126)
215 1y8m_A FIS1; mitochondria, unk 23.8 3.3E+02 0.011 22.9 11.4 87 127-221 37-123 (144)
216 4b4t_Q 26S proteasome regulato 22.7 4.6E+02 0.016 24.3 10.5 118 111-239 110-244 (434)
No 1
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2.4e-50 Score=398.25 Aligned_cols=281 Identities=18% Similarity=0.195 Sum_probs=224.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHH
Q 014516 74 STQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDEL 153 (423)
Q Consensus 74 ~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL 153 (423)
-.......|+.+...|+..++ .+++++++|++|+++|.+||+||||||+||.+|..++ ...+++||
T Consensus 24 ~~i~y~~~y~~~~~~~~a~~~-------------~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~-~~~~~eeL 89 (306)
T 3dra_A 24 CQILYDEDYKQIMGLLLALMK-------------AEEYSERALHITELGINELASHYTIWIYRFNILKNLP-NRNLYDEL 89 (306)
T ss_dssp TCCCCCHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCT-TSCHHHHH
T ss_pred eeeeeCHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcc-cccHHHHH
Confidence 344556789999999999877 4688999999999999999999999999999999874 14899999
Q ss_pred HHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHH
Q 014516 154 HLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKK 233 (423)
Q Consensus 154 ~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~ 233 (423)
.+++.+|..|||+|++|+||+|+++++...... ...+++||.+|+++++.||||||||+||+|++.+++.....+|+++
T Consensus 90 ~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 90 DWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 999999999999999999999999655421100 0126899999999999999999999999999999976333499999
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 014516 234 SRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLI 313 (423)
Q Consensus 234 ~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~ 313 (423)
++++|+.||+|+||||||++++.++... ....++++|+++++++|..+|+|+|+|+|+++++....
T Consensus 169 ~~~~i~~d~~N~sAW~~R~~ll~~l~~~--------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 169 VDKVIDTDLKNNSAWSHRFFLLFSKKHL--------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHSSGGG--------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcccc--------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 9999999999999999999999986321 12357999999999999999999999999999986521
Q ss_pred HHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhhhhhc
Q 014516 314 KHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRA 393 (423)
Q Consensus 314 ~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~~~~~ 393 (423)
+ ..++...|.. .++..+..+ ..+.+.+.||.+.+.+. | +. .
T Consensus 235 ~------------------~~~~~~~~~~-------~~~~~~~~~-------~~s~~al~~la~~~~~~-~-~~-----~ 275 (306)
T 3dra_A 235 R------------------SITQLEEFSL-------QFVDLEKDQ-------VTSSFALETLAKIYTQQ-K-KY-----N 275 (306)
T ss_dssp C------------------CGGGGHHHHH-------TTEEGGGTE-------ESCHHHHHHHHHHHHHT-T-CH-----H
T ss_pred C------------------ChHHHHHHHH-------HHHhccCCC-------CCCHHHHHHHHHHHHcc-C-CH-----H
Confidence 0 0112333432 333322111 23577889999887643 3 11 2
Q ss_pred chhhHHHHhh-hcCcCccchhhhhhccCCC
Q 014516 394 GVGDVTRMLK-RSCPDRSSLWDYLVGYHSE 422 (423)
Q Consensus 394 ~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~ 422 (423)
+|.++.+.|. ++||+|++||+|+++.+..
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~~~~l~~ 305 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQISKLTS 305 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHhhccc
Confidence 5888888886 7999999999999998863
No 2
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=3.8e-51 Score=409.60 Aligned_cols=322 Identities=16% Similarity=0.154 Sum_probs=239.0
Q ss_pred HhhccCCCCCcccccCCcccccchhhhcccCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCC
Q 014516 22 RILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGN 101 (423)
Q Consensus 22 ~~l~~dp~idEv~~i~~s~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~ 101 (423)
..++.+|.|++|.+||. ++ +| =+|-...+.+.|+.|...|+..++
T Consensus 21 ~~~~~~~~w~dv~p~~~-------~~--------------~~-------~~~~~i~y~~~y~~~~~~~r~~~~------- 65 (349)
T 3q7a_A 21 IPMSQRRSWADVKPIMQ-------DD--------------GP-------NPVVPIMYSEEYKDAMDYFRAIAA------- 65 (349)
T ss_dssp CCTTSCGGGTTCCCCCC-------CC--------------CS-------SCSSCBCCCHHHHHHHHHHHHHHH-------
T ss_pred cCcccCcccCCCcccCC-------CC--------------CC-------CCeeeeeeCHHHHHHHHHHHHHHH-------
Confidence 34566899999988882 11 11 134445667899999999998877
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516 102 FSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~ 181 (423)
.+++++++|++|+++|.+||++|||||+||.+|..++ ..+++||.+++.+|..|||+|++|+||+|++.++.
T Consensus 66 ------~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 66 ------KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp ------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred ------hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999986 46999999999999999999999999999999983
Q ss_pred hccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh------hHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516 182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE------QVLDELKKSRNWSGLHVADNSCFHYRRRLM 255 (423)
Q Consensus 182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll 255 (423)
.. .+.+||++|++++++||||||||+||+|++.+++.. .+.+||++++++|+.||+|+|||+||++++
T Consensus 138 ~~------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 138 PQ------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp CS------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CC------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 21 147999999999999999999999999999988642 356999999999999999999999999999
Q ss_pred HHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchh
Q 014516 256 LRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDI 335 (423)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~ 335 (423)
.++... .....++++|+++++++|.++|+|+|+|+|+|+|+.........-.....|....
T Consensus 212 ~~l~~~-------------~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~------ 272 (349)
T 3q7a_A 212 VSRPGA-------------ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTAS------ 272 (349)
T ss_dssp TTSTTC-------------CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred Hhcccc-------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccc------
Confidence 886421 0124578999999999999999999999999999865221100000000111100
Q ss_pred hHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhhhhhcchhhHHHHh-hhcCcCccchhh
Q 014516 336 DIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRML-KRSCPDRSSLWD 414 (423)
Q Consensus 336 ~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~p~r~~~w~ 414 (423)
.+...+..=.+++.+.....+.+ +.+ +.+.+++.+|++.+.+. | + ..+|.++.+.| +++||||++||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~s~~al~~l~d~~~~~-~----~--~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 273 KLNPDIETVEAFGFPMPSDPLPE---DTP-LPVPLALEYLADSFIEQ-N----R--VDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp -------------CCCCC-CCCS---SCC-SCCHHHHHHHHHHHHHT-T----C--HHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccccchhHHHHHHHHHhccccc---ccC-CCcHHHHHHHHHHHHhc-C----C--HHHHHHHHHHHHhhhChHHHHHHH
Confidence 01001111111222222211100 011 45788999999998755 4 1 12688899999 599999999999
Q ss_pred hhhccCCC
Q 014516 415 YLVGYHSE 422 (423)
Q Consensus 415 ~~~~~~~~ 422 (423)
|+++.+.|
T Consensus 342 ~~~~~~~~ 349 (349)
T 3q7a_A 342 FRRRECAE 349 (349)
T ss_dssp HHHHHHC-
T ss_pred HHHHhhcC
Confidence 99998765
No 3
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=6.8e-46 Score=369.59 Aligned_cols=282 Identities=19% Similarity=0.265 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCC-------cCCHHH
Q 014516 79 IPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRL-------LPILMD 151 (423)
Q Consensus 79 ~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~-------~~~~~~ 151 (423)
++.|+.++..|+..++ .+++++++|++|+.+|.+||+||||||+||.+|..++. ...+++
T Consensus 26 i~~y~~~~~~~~~~~~-------------~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~ 92 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKA 92 (331)
T ss_dssp HHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence 5689999888888766 56899999999999999999999999999999988751 012789
Q ss_pred HHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHH
Q 014516 152 ELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL 231 (423)
Q Consensus 152 EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL 231 (423)
||.+++.+|..|||||++|+||+|++.++... .+++|+.+|+++++.||||||||+||+||+..++. .+++|+
T Consensus 93 EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-~~~eel 165 (331)
T 3dss_A 93 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEEL 165 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-CHHHHH
Confidence 99999999999999999999999999988642 27899999999999999999999999999999875 368999
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516 232 KKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY 311 (423)
Q Consensus 232 ~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~ 311 (423)
++++++|+.||+|+|||+||++++.++......++ .+ ......+++|++++.++|.++|+|+|+|+|+|+|+..
T Consensus 166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~----~~--~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc----cc--ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999743210000 00 1123579999999999999999999999999999864
Q ss_pred HHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHH--Hhhhhccccchhhhh
Q 014516 312 LIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLW--LTKQIPEYQGIDIQE 389 (423)
Q Consensus 312 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~W--l~~~~~~~~~~~~~~ 389 (423)
... ..++ .......|++|++.+.+++..+|+. .|.+..= +...+ +..| .++
T Consensus 240 ~~~-----~~~~----------~~~~~~~l~~el~~~~elle~~pd~---------~w~l~~~~~~~~~~-~~~~--~~~ 292 (331)
T 3dss_A 240 GSG-----RCEL----------SVEKSTVLQSELESCKELQELEPEN---------KWCLLTIILLMRAL-DPLL--YEK 292 (331)
T ss_dssp SSC-----GGGC----------CHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHH-CTTT--THH
T ss_pred ccC-----cccc----------chHHHHHHHHHHHHHHHHHhhCccc---------chHHHHHHHHHHhh-cccc--cHH
Confidence 210 0001 1346789999999999999999976 3443221 11111 1112 111
Q ss_pred hhhcchhhHHHHhhhcCcCccchhhhhh
Q 014516 390 KLRAGVGDVTRMLKRSCPDRSSLWDYLV 417 (423)
Q Consensus 390 ~~~~~~~~~~~~l~~~~p~r~~~w~~~~ 417 (423)
+...++.-|.+-||.|++||....
T Consensus 293 ----~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 293 ----ETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp ----HHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCcchhhHHHHHH
Confidence 456778888899999999998764
No 4
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=6.6e-37 Score=325.64 Aligned_cols=209 Identities=21% Similarity=0.327 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCc-------CCH
Q 014516 77 ILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLL-------PIL 149 (423)
Q Consensus 77 ~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~-------~~~ 149 (423)
.-++.|+.|+..|++..+ .++++++++++|+++|.+||++|||||+||.++..++.. ..+
T Consensus 23 ~k~~~y~~~~~~~~~~~~-------------~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~ 89 (567)
T 1dce_A 23 QKLKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89 (567)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhH
Confidence 347899999999998765 468899999999999999999999999999999988610 018
Q ss_pred HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHH
Q 014516 150 MDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLD 229 (423)
Q Consensus 150 ~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~ 229 (423)
++||.+++.+|..+||+|++|+||+|++.++... .+++|+++|+++++.||+|||||+||+|++..++. .+++
T Consensus 90 ~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-~~~~ 162 (567)
T 1dce_A 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAE 162 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-ChHH
Confidence 9999999999999999999999999999998742 27999999999999999999999999999999873 3799
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 230 ELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 230 EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
|+++++++|+.||+|+|||+||++++.++........ .| ......+++|++++.++|..+|+|+|+|+|+|+++
T Consensus 163 el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~----~~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS----CC--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc----cc--cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 9999999999999999999999999998743210000 00 01235799999999999999999999999999998
Q ss_pred HH
Q 014516 310 MY 311 (423)
Q Consensus 310 ~~ 311 (423)
..
T Consensus 237 ~~ 238 (567)
T 1dce_A 237 GR 238 (567)
T ss_dssp SC
T ss_pred hc
Confidence 64
No 5
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=6.4e-35 Score=292.10 Aligned_cols=211 Identities=16% Similarity=0.246 Sum_probs=182.1
Q ss_pred HHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHH
Q 014516 123 LLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIA 202 (423)
Q Consensus 123 Ll~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l 202 (423)
|..+|++..+|++++.++.+.. .-+++|.+++.+|..||++|++|+||+++|..++. .+++||.+++.++
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e---~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-------~l~eEL~~~~~~L 116 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEE---KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-------SLEDELRLMNEFA 116 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHH
Confidence 5778899999999999999875 45789999999999999999999999999998864 2789999999999
Q ss_pred HhcCCCchhchHHHHHHHhc-ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHH
Q 014516 203 ERSKMNYRAWNHRCWLVSFM-TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIW 281 (423)
Q Consensus 203 ~~~pkNY~AW~hR~wll~~~-~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (423)
..+||||.||+||+|++..+ + ..+.+||++++++++.||+|++||+||++++.++.... .....++
T Consensus 117 ~~nPKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~------------~~~~~~~ 183 (349)
T 3q7a_A 117 VQNLKSYQVWHHRLLLLDRISP-QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG------------RISEAQW 183 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHCC-SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT------------CCCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc------------ccchhhH
Confidence 99999999999999999998 4 23689999999999999999999999999999875320 0113578
Q ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhh
Q 014516 282 KEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFE 361 (423)
Q Consensus 282 ~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~ 361 (423)
.+|+++++++|+.+|+|+|+|+||++++..+. .. ......+++|+++++++++++|+|
T Consensus 184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~--------~~-----------~~~~~~~~eELe~~~~aI~~~P~n--- 241 (349)
T 3q7a_A 184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP--------GA-----------ETSSRSLQDELIYILKSIHLIPHN--- 241 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST--------TC-----------CCCHHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc--------cc-----------ccchHHHHHHHHHHHHHHHhCCCC---
Confidence 89999999999999999999999999985411 00 012467899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhccc
Q 014516 362 EAQAIHSAAYMLWLTKQIPEY 382 (423)
Q Consensus 362 ~~q~~~~~~y~~Wl~~~~~~~ 382 (423)
| ++|.|++||+.+.+..
T Consensus 242 --~--SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 242 --V--SAWNYLRGFLKHFSLP 258 (349)
T ss_dssp --H--HHHHHHHHHHHHTTCC
T ss_pred --H--HHHHHHHHHHHhcCCC
Confidence 4 5999999999876544
No 6
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=6.7e-34 Score=283.17 Aligned_cols=194 Identities=23% Similarity=0.340 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~ 225 (423)
.-+++|.+++.+|..||++|++|+|||++|..++...+ .....+.+||.+++.++..+||||++|+||+|++..++.+
T Consensus 45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 34678999999999999999999999999998875311 2334589999999999999999999999999999999865
Q ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
.+.+|+++++++++.||+|||||+||++++..+.. .+++|+++++++|..+|+|.|+|+||
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-------------------~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-------------------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 68999999999999999999999999999998621 26899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhh
Q 014516 306 RFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQI 379 (423)
Q Consensus 306 r~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~ 379 (423)
++++..+.... +.+. .+.. ....+++|+++++++++++|+| | ++|.|++||+.+.
T Consensus 186 ~~ll~~l~~~~-----~~~~----~~~~---~~~~~~eEle~~~~ai~~~P~d-----~--SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 186 SCLLPQLHPQP-----DSGP----QGRL---PENVLLKELELVQNAFFTDPND-----Q--SAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHSCCC---------------CC---CHHHHHHHHHHHHHHHHHSTTC-----H--HHHHHHHHHHHSS
T ss_pred HHHHHHhhhcc-----cccc----cccc---chHHHHHHHHHHHHHHHhCCCC-----H--HHHHHHHHHHHhc
Confidence 99987632100 0000 0011 2367899999999999999999 4 5999999999775
No 7
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.97 E-value=1.7e-30 Score=276.20 Aligned_cols=195 Identities=22% Similarity=0.340 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc--ChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 149 LMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 149 ~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
-+++|.+++.+|..||++|++|+|||+++..++... ......+++|+++++++++.+||||+||+||+|++.+++...
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 466699999999999999999999999999987632 134456899999999999999999999999999999998656
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr 306 (423)
+++|+++++++++.||+|+|||+||++++.++.. .+++|+++++++|+.+|+|+|+|+||+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-------------------~~~~el~~~~~~I~~~p~n~saW~~r~ 185 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYRS 185 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHHCCCCccHHHHHH
Confidence 8999999999999999999999999999998621 368999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhcc
Q 014516 307 FLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPE 381 (423)
Q Consensus 307 ~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~ 381 (423)
+++..+... .+..+ .+.+ ....+++|+++++.|++++|+| |+ +|.|+.|+..+...
T Consensus 186 ~ll~~l~~~-----~~~~~----~~~~---~~~~~~eel~~~~~ai~~~P~~-----~s--aW~y~~~ll~~~~~ 241 (567)
T 1dce_A 186 CLLPQLHPQ-----PDSGP----QGRL---PENVLLKELELVQNAFFTDPND-----QS--AWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHSCC-----CCSSS----CCSS---CHHHHHHHHHHHHHHHHHCSSC-----SH--HHHHHHHHHSCCCC
T ss_pred HHHHhhccc-----ccccc----cccc---cHHHHHHHHHHHHHHHhhCCCC-----cc--HHHHHHHHHhcCCC
Confidence 998653110 00000 0011 1356899999999999999999 44 99999999977543
No 8
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.97 E-value=8.9e-31 Score=258.29 Aligned_cols=200 Identities=17% Similarity=0.228 Sum_probs=166.0
Q ss_pred CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516 128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (423)
Q Consensus 128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (423)
++..+..+-+.++.... .-++.|.+++.+|..||++|++|++|+.+|..++. ..+++||.+++.++..+|+
T Consensus 31 ~y~~~~~~~~a~~~~~e---~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~------~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEE---YSERALHITELGINELASHYTIWIYRFNILKNLPN------RNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp HHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT------SCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc------ccHHHHHHHHHHHHHHCcc
Confidence 34455555566666653 45789999999999999999999999999998872 1289999999999999999
Q ss_pred CchhchHHHHHH----HhcCh-hhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHH
Q 014516 208 NYRAWNHRCWLV----SFMTR-EQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWK 282 (423)
Q Consensus 208 NY~AW~hR~wll----~~~~~-~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (423)
||.+|+||+|++ ..++. ..+.+|++++++++..||+|++||+||++++.++... -..
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~------------------~~~ 163 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH------------------NDA 163 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT------------------TCH
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------------ChH
Confidence 999999999999 55421 3589999999999999999999999999999986310 023
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhh
Q 014516 283 EELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEE 362 (423)
Q Consensus 283 eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~ 362 (423)
+|+++++++|+.+|+|.|+|+||++++..+. .. .....+++|+++++++++++|+|
T Consensus 164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~--------~~------------~~~~~~~eEl~~~~~aI~~~p~n---- 219 (306)
T 3dra_A 164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKK--------HL------------ATDNTIDEELNYVKDKIVKCPQN---- 219 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG--------GG------------CCHHHHHHHHHHHHHHHHHCSSC----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc--------cc------------chhhhHHHHHHHHHHHHHhCCCC----
Confidence 8999999999999999999999999986421 00 02356899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 014516 363 AQAIHSAAYMLWLTKQIPE 381 (423)
Q Consensus 363 ~q~~~~~~y~~Wl~~~~~~ 381 (423)
.++|.|+.|++...+.
T Consensus 220 ---~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 220 ---PSTWNYLLGIHERFDR 235 (306)
T ss_dssp ---HHHHHHHHHHHHHTTC
T ss_pred ---ccHHHHHHHHHHhcCC
Confidence 4599999999987654
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=9.2e-27 Score=236.10 Aligned_cols=274 Identities=18% Similarity=0.263 Sum_probs=207.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHH
Q 014516 71 LGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILM 150 (423)
Q Consensus 71 Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~ 150 (423)
.++....+.+-|..+...+...+. .....++++..++.+|.+||+++++|++|+.++..++ .+++
T Consensus 85 ~~~~ai~~~p~~~~a~~~lg~~~~-------------~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~ 149 (382)
T 2h6f_A 85 NPVVQIIYSDKFRDVYDYFRAVLQ-------------RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLH 149 (382)
T ss_dssp SCSSEECCCHHHHHHHHHHHHHHH-------------HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHH
T ss_pred CcchhhhCChhhHHHHHHHHHHHH-------------HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHH
Confidence 334444445556666554444433 1244689999999999999999999999999999986 2499
Q ss_pred HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH
Q 014516 151 DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE 230 (423)
Q Consensus 151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E 230 (423)
+++.+++.+|..+|+++.+|++|++++..++. +.+++.++.++++.+|+|+++|.+|+|++..++. ++++
T Consensus 150 eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~--------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eA 219 (382)
T 2h6f_A 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNE 219 (382)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHH
Confidence 99999999999999999999999999999876 5789999999999999999999999999999876 7899
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 231 LKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 231 L~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
+++++++|..||+|.++|++|+.++..+.+. ....++..|++++.++|..+|+|.++|+|+++++.
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~--------------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGY--------------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS--------------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc--------------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999885321 01245788899999999999999999999998874
Q ss_pred HHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccch----h
Q 014516 311 YLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGI----D 386 (423)
Q Consensus 311 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~----~ 386 (423)
. . +.. +. .+-++.+..+ ..+|++. .+.. .|.+.+.+. |- +
T Consensus 286 ~----~-----g~~-----------~~----~~a~~~~~~~-~~~p~~~-------~al~---~La~~~~~~-~~~~~~~ 329 (382)
T 2h6f_A 286 D----R-----GLS-----------KY----PNLLNQLLDL-QPSHSSP-------YLIA---FLVDIYEDM-LENQCDN 329 (382)
T ss_dssp T----T-----CGG-----------GC----HHHHHHHHHH-TTTCCCH-------HHHH---HHHHHHHHH-HHTTCSS
T ss_pred c----c-----Ccc-----------ch----HHHHHHHHHh-ccCCCCH-------HHHH---HHHHHHHHH-hcccccc
Confidence 3 0 000 01 1123344455 6678762 1222 222222111 10 0
Q ss_pred hhhhhhcchhhHHHHh-hhcCcCccchhhhhhccC
Q 014516 387 IQEKLRAGVGDVTRML-KRSCPDRSSLWDYLVGYH 420 (423)
Q Consensus 387 ~~~~~~~~~~~~~~~l-~~~~p~r~~~w~~~~~~~ 420 (423)
..+.. .++.++++.+ .+.||+|++||.++.+.+
T Consensus 330 ~~~~~-~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDIL-NKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHH-HHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 01111 2678888899 699999999999998654
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.83 E-value=2.4e-20 Score=188.88 Aligned_cols=200 Identities=15% Similarity=0.309 Sum_probs=175.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516 121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (423)
Q Consensus 121 ~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (423)
++|.++|++..+|++++.++...+ .+++++..++.+|..+|+++++|++|+.++..++.. +++++.++.+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g---~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d-------~~eAl~~~~~ 157 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDE---RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD-------LHEEMNYITA 157 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-------HHHHHHHHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccC-------HHHHHHHHHH
Confidence 457899999999999999998875 789999999999999999999999999999988641 6899999999
Q ss_pred HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHH
Q 014516 201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQI 280 (423)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (423)
+++.+|+|+.+|+||++++..++. +.+++..+++.|.+||.|.++|.+|++++..+. .
T Consensus 158 al~l~P~~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g--------------------~ 215 (382)
T 2h6f_A 158 IIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFK--------------------L 215 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------------------C
T ss_pred HHHHCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC--------------------C
Confidence 999999999999999999998875 789999999999999999999999999998863 2
Q ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchh
Q 014516 281 WKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANF 360 (423)
Q Consensus 281 ~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~ 360 (423)
+++++++++++|..+|+|.++|+++..++..+. +. . ....+..|++.++.++.++|++
T Consensus 216 ~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~--------~~---------~---~eA~~~~el~~~~~Al~l~P~~-- 273 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT--------GY---------N---DRAVLEREVQYTLEMIKLVPHN-- 273 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CS---------C---SHHHHHHHHHHHHHHHHHSTTC--
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------Cc---------c---hHHHHHHHHHHHHHHHHHCCCC--
Confidence 467999999999999999999999988864311 00 0 1245788999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 014516 361 EEAQAIHSAAYMLWLTKQI 379 (423)
Q Consensus 361 ~~~q~~~~~~y~~Wl~~~~ 379 (423)
..+|.|+.|+....
T Consensus 274 -----~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 274 -----ESAWNYLKGILQDR 287 (382)
T ss_dssp -----HHHHHHHHHHHTTT
T ss_pred -----HHHHHHHHHHHHcc
Confidence 45999999988663
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.27 E-value=6.5e-10 Score=102.00 Aligned_cols=173 Identities=8% Similarity=-0.087 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh---h
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST---L 187 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~---~ 187 (423)
..++++..++.+|.++|++..+|..+..++...+ .+++++..+..++..+|++..+|..+..++......... .
T Consensus 20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 96 (217)
T 2pl2_A 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLG---LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG 96 (217)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence 3588999999999999999999999999999886 789999999999999999999999999998887110000 0
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
..-+.+.+..+.++++.+|.+..+|..++.++...+. +++.+..+++.+..+ .+..+|..+..++..+.
T Consensus 97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g-------- 165 (217)
T 2pl2_A 97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSALAELYLSMG-------- 165 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT--------
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC--------
Confidence 0127899999999999999999999999999988766 889999999999999 88899998888877652
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
-+++.+....+++..+|++..+|..+..++
T Consensus 166 ------------~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 166 ------------RLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp ------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 267889999999999999999998876654
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.25 E-value=4.2e-10 Score=99.06 Aligned_cols=154 Identities=6% Similarity=-0.050 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+++++.++++|.++|++..+|..+..+....+ ..++.+..+..++..+|++..+|.....+...... +
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 89 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG---LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE--------K 89 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC--------H
Confidence 488999999999999999999999999998886 78999999999999999999999999888877655 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS 271 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~ 271 (423)
...+..+.+++..+|.+..+|..++.+...++. +++.++.+++.++.+|.|..+|..+..+..++.
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g------------ 155 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG------------ 155 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC------------
Confidence 788899999999999999999999999988765 899999999999999999999999999887752
Q ss_pred CchhchHHHHHHHHHHHHHHHhhcCCC
Q 014516 272 GYFVETYQIWKEELDWNESLIKQYVGR 298 (423)
Q Consensus 272 ~~~~~~~~~~~eEL~~~~~~I~~~p~n 298 (423)
-+++.+++.+++|+.+|.|
T Consensus 156 --------~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 --------LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp --------CHHHHHHHHHHHHHTTHHH
T ss_pred --------CHHHHHHHHHHHHhCCccC
Confidence 2678999999999999975
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.11 E-value=7.6e-09 Score=90.89 Aligned_cols=151 Identities=9% Similarity=-0.082 Sum_probs=133.6
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
++..++|+..+.+....+ ++++++..+..+|..+|++..+|..+..++..++. +++.+..+.+++..+|
T Consensus 2 ge~~~iy~~lG~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKG---DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLDT 70 (184)
T ss_dssp --CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCc
Confidence 467899999999998876 89999999999999999999999999999988766 6889999999999999
Q ss_pred CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHH
Q 014516 207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELD 286 (423)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~ 286 (423)
.+..+|...+.+...... +...+....+.+..+|.+..+|..+..+...+. .+++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--------------------~~~~A~~ 128 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSMG--------------------EHDKAIE 128 (184)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC--------------------CchhHHH
Confidence 999999999888877654 788899999999999999999999998887652 3788999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHH
Q 014516 287 WNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 287 ~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
+.++++..+|.+..+|+.+..++.
T Consensus 129 ~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 129 AYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHH
Confidence 999999999999999998776654
No 14
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.07 E-value=1.4e-09 Score=91.84 Aligned_cols=121 Identities=7% Similarity=0.021 Sum_probs=109.1
Q ss_pred HHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516 121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (423)
Q Consensus 121 ~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (423)
.+.-+||+...+|+-|+......+ .+++++..++.++..+|+++.+|..+..++..++. +.+.+..+.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~ 72 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKG---DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--------FQRALDDCDT 72 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--------HHHHHHHHHH
Confidence 345689999999999999888875 89999999999999999999999999999998876 7899999999
Q ss_pred HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
+++.+|.+..+|..++.+...++. +++.+..+++.++.+|.|..++.....+
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999988876 8999999999999999999988766544
No 15
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=2.3e-08 Score=91.08 Aligned_cols=184 Identities=6% Similarity=-0.049 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 111 LAIEVMIHSKALLLLSC-DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nP-e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
..++++..+..++.++| .+..+|..++.+....+ .+++++..+..++..+|++..+|..+..++..++.
T Consensus 22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------- 91 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK---KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKN------- 91 (228)
T ss_dssp CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTC-------
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHccc-------
Confidence 35889999999999999 99999999999998886 79999999999999999999999999999988776
Q ss_pred hHHHHHHHHHHHHHhcCCCc-------hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhh
Q 014516 190 IIERESELVEKIAERSKMNY-------RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA--DNSCFHYRRRLMLRNLE 260 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY-------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~--N~SaW~yR~~Ll~~l~~ 260 (423)
+.+.+..+.++++.+|.|. .+|...+.+....+. +++.++.+.+.++.+|. +..+|..+..+......
T Consensus 92 -~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 92 -NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp -HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 7899999999999999999 558888877766654 89999999999999999 88999998887665422
Q ss_pred cc---cccCCC-CCC---CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 014516 261 GF---CYTQDN-NSS---GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRF 307 (423)
Q Consensus 261 ~~---~~~~~~-~~~---~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~ 307 (423)
.. .....+ ... +........+++.+.+..+++..+|+|..+......
T Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 169 DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 10 000000 000 000112345688899999999999999877665443
No 16
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=9.2e-09 Score=112.09 Aligned_cols=153 Identities=11% Similarity=-0.029 Sum_probs=118.6
Q ss_pred hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516 125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (423)
Q Consensus 125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (423)
-+|+|..+++..+.++...+ .+++++..+.++|..+|++..+|+....++.+++. +++.+..+.++++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G---~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--------~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------LQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh
Confidence 36888888888888887775 67888888888888888888888888888777765 67778888888888
Q ss_pred cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHH
Q 014516 205 SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEE 284 (423)
Q Consensus 205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eE 284 (423)
+|.+..+|...+.++..++. +++.++.+++.++++|.+..+|..+..++..+. .+++.
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g--------------------~~~eA 130 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDSG--------------------NIPEA 130 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------------CHHHH
Confidence 88888888888888777665 777888888888888888888888887776641 25677
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 285 LDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 285 L~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
+++.+++++.+|++..+|+.+..++.
T Consensus 131 i~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 131 IASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 78888888888888888877666553
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.01 E-value=4.4e-08 Score=89.63 Aligned_cols=149 Identities=7% Similarity=-0.138 Sum_probs=130.9
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
|.+..+|..++.++...+ .+++++..+..++..+|++..+|..+..++...+. +.+.+..+.++++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALG---RYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------VNPALENGKTLVARTP 70 (217)
T ss_dssp --CCHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC
Confidence 778889999999988876 79999999999999999999999999999988776 6899999999999999
Q ss_pred CCchhchHHHHHHHhc-----------ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchh
Q 014516 207 MNYRAWNHRCWLVSFM-----------TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFV 275 (423)
Q Consensus 207 kNY~AW~hR~wll~~~-----------~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~ 275 (423)
.+..+|...+.++... +. +++.+..+.+.+..+|.+..+|..+..++....
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g---------------- 132 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGLVYALLG---------------- 132 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----------------
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC----------------
Confidence 9999999999998776 44 788999999999999999999999998887642
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 276 ETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 276 ~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
-+++.+....+++..+ ++..+|..+..++
T Consensus 133 ----~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 133 ----ERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp ----CHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 2678899999999999 8888888766554
No 18
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.00 E-value=5.5e-08 Score=95.45 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++..+..++.++|++..+|+.+..++...+ .+++++..+..++..+|+++.+|.....++..++. +
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~ 151 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAG---DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR--------L 151 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS---CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC--------H
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------H
Confidence 466777777777777777777777777666654 55667777777777777777777776666665544 5
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
++.+.+..++++.+|.+..+|...+.+....+. +.+.+..+++.+..+|.+..+|..+..+...
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 666677777777777777777776666655543 5666777777777777777777666665544
No 19
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.98 E-value=2.2e-08 Score=103.09 Aligned_cols=179 Identities=9% Similarity=0.012 Sum_probs=150.4
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC-hhH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS-TLQ 188 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~-~~~ 188 (423)
.+.+++++.+..+|.++|++..+|+..+.++...+ .+++++..+..++..+|+ +.+|.....++..+..... ...
T Consensus 117 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG---DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence 34489999999999999999999999999998876 799999999999999999 7899888888876600000 001
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc----C--hhhHHHHHHHHHHHHhccC---CChhHHHHHHHHHHHhh
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFM----T--REQVLDELKKSRNWSGLHV---ADNSCFHYRRRLMLRNL 259 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~----~--~~~~~~EL~~~~k~i~~d~---~N~SaW~yR~~Ll~~l~ 259 (423)
..+++.+..+.++++.+|.+..+|...+.++..+ + ...+++.+..+.+.+..+| .+..+|..+..++..+.
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence 2278999999999999999999999999998765 1 1348899999999999999 99999999998887752
Q ss_pred hcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 014516 260 EGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYL 312 (423)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l 312 (423)
-+++.+++..+++..+|++..+|..+..++..+
T Consensus 273 --------------------~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 273 --------------------SYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp --------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 268899999999999999999999988777653
No 20
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=3.4e-09 Score=114.37 Aligned_cols=166 Identities=4% Similarity=-0.221 Sum_probs=149.7
Q ss_pred cchHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516 110 TLAIEVMIHSKALL--------LLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS 181 (423)
Q Consensus 110 ~~~~~~L~~t~~lL--------l~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~ 181 (423)
...+++++.++.++ ..+|++..+|..+..++...+ .+++++..++.++..+|++..+|+++..++..++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 34588999999999 999999999999999998876 7999999999999999999999999999998877
Q ss_pred hccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhc
Q 014516 182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEG 261 (423)
Q Consensus 182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~ 261 (423)
. +++.+..+.++++.+|.+..+|..++.+...++. +++ ++.+++.++.+|.|..+|..+..++..+.
T Consensus 482 ~--------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g-- 548 (681)
T 2pzi_A 482 D--------YDSATKHFTEVLDTFPGELAPKLALAATAELAGN--TDE-HKFYQTVWSTNDGVISAAFGLARARSAEG-- 548 (681)
T ss_dssp C--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT--
T ss_pred C--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC--
Confidence 6 7899999999999999999999999999988765 677 99999999999999999999998887752
Q ss_pred ccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 262 FCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
.+++.++...+++..+|++..+|..+..++
T Consensus 549 ------------------~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 549 ------------------DRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp ------------------CHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred ------------------CHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 267899999999999999999998876664
No 21
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.97 E-value=1.3e-07 Score=92.74 Aligned_cols=196 Identities=10% Similarity=-0.064 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCC----CCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516 81 VYKAAKHAFISALRQYKTPGN----FSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS 156 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~----~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~ 156 (423)
-|..|...|.+++........ ....-......+++++.+..++.++|++.++|+....++...+ .+++++..+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG---RLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHH
Confidence 367777777777653111000 0000001123467888999999999999999999999998875 789999999
Q ss_pred HHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHH
Q 014516 157 ALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN 236 (423)
Q Consensus 157 ~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k 236 (423)
..++..+|.+..+|+....++...+. +...+..+.++++.+|.+..+|...+.+....+. +++.+..+.+
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~ 228 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGE--------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI--FDRAVAAYLR 228 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 99999999999999998888776654 6788888999999999999999888888876654 6778888888
Q ss_pred HHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 237 WSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 237 ~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
.+..+|.+..+|..+..+..... .+++.++...+++..+|.+..+|..+..++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQG--------------------LIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 88889988888888777665531 255667777777777777777776655443
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.95 E-value=3.1e-07 Score=86.63 Aligned_cols=198 Identities=10% Similarity=-0.049 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC----CCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHH
Q 014516 80 PVYKAAKHAFISALRQYKTPGNFSG----KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHL 155 (423)
Q Consensus 80 ~lY~~A~~~f~~~l~~y~~~~~~~~----~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~ 155 (423)
.-|..|.+.|.+++........... ........++++.....++..+|++..+|.....+....+ ...++++..
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~ 113 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG--HKNEHARRY 113 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC--SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh--hhHHHHHHH
Confidence 3578888888887764322111000 0001234588999999999999999999999999888764 368899999
Q ss_pred HHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHH
Q 014516 156 SALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSR 235 (423)
Q Consensus 156 ~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~ 235 (423)
+..++..+|++..+|.....++...+. +.+.+..+.++++.+|.+..+|.....+....+. +++.+..+.
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 183 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESE--------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--SKLAERFFS 183 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 999999999999999999998887765 6889999999999999999999998888877654 789999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc---------CCCccHHHHHH
Q 014516 236 NWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY---------VGREALWLHRR 306 (423)
Q Consensus 236 k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~---------p~neSaW~yrr 306 (423)
+.+..+|.+..+|..+..+..... -+++.+.+..+++... |.+..+|..+.
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNG--------------------EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 999999999999999888777642 2677888888888876 66667777765
Q ss_pred HHH
Q 014516 307 FLS 309 (423)
Q Consensus 307 ~Ll 309 (423)
.+.
T Consensus 244 ~~~ 246 (330)
T 3hym_B 244 HVC 246 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 23
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.93 E-value=4.5e-08 Score=106.61 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=127.5
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++++++++|.++|++..+|+.++.++...+ .+++++..+..+|..+|++..+|+.+..++..++.
T Consensus 24 ~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~-------- 92 (723)
T 4gyw_A 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD-------- 92 (723)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence 3589999999999999999999999999999986 79999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL 259 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~ 259 (423)
+++.++.+.++++.+|.+..+|...+.++...+. +++.++.+++.++++|.+..+|..+..++..+.
T Consensus 93 ~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 7899999999999999999999999999988876 899999999999999999999999999888763
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.91 E-value=2.7e-07 Score=82.07 Aligned_cols=162 Identities=10% Similarity=-0.061 Sum_probs=139.9
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHh-hhccChhHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMI-SRNCSTLQW 189 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l-~~~~~~~~~ 189 (423)
..++++.....++..+|++..+|.....+....+ .+++.+..+..++..+|.+..+|.....++... +.
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~------- 92 (225)
T 2vq2_A 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR------- 92 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC-------
T ss_pred hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc-------
Confidence 3588999999999999999999999999988875 789999999999999999999999988887766 54
Q ss_pred hHHHHHHHHHHHHH--hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 190 IIERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 190 ~~~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
+++.+.++.++++ .+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|.....+.....
T Consensus 93 -~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------- 161 (225)
T 2vq2_A 93 -PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG-------- 161 (225)
T ss_dssp -HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT--------
T ss_pred -HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC--------
Confidence 6888999999999 778888999999888877655 788999999999999999999988887776642
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcC-CCccHHHHH
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYV-GREALWLHR 305 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p-~neSaW~yr 305 (423)
.+++.+.+..+++..+| .+..+|...
T Consensus 162 ------------~~~~A~~~~~~~~~~~~~~~~~~~~~~ 188 (225)
T 2vq2_A 162 ------------QLGDADYYFKKYQSRVEVLQADDLLLG 188 (225)
T ss_dssp ------------CHHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 26778889999999999 888877543
No 25
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.90 E-value=2.3e-07 Score=95.54 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCH-HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPIL-MDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~-~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
.++++.....++...|+...+|..++.++...+ .+ ++++..+..++..+|++..+|.....++...+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------- 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP---DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD-------- 152 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSS---SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------
Confidence 466777888888899999999999999998875 78 999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC-------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccc
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMT-------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFC 263 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~ 263 (423)
+++.+.++.++++.+|. ..+|...+.++..+. ...+++.++.+.+.+..+|.|..+|..+..++..+.-..
T Consensus 153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~- 230 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNT- 230 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh-
Confidence 78999999999999998 689999999887760 024788999999999999999999999998887651110
Q ss_pred ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcC---CCccHHHHHHHHHH
Q 014516 264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYV---GREALWLHRRFLSM 310 (423)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p---~neSaW~yrr~Ll~ 310 (423)
| .....+++.+++..+++..+| .+..+|+.+..++.
T Consensus 231 --------~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 231 --------G---QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269 (474)
T ss_dssp --------T---CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH
T ss_pred --------c---cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 0 012357889999999999999 99999998776654
No 26
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.90 E-value=2.1e-07 Score=84.60 Aligned_cols=155 Identities=4% Similarity=-0.117 Sum_probs=132.1
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCC-CchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSP-KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nP-K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
+.+..+|..++.+....+ .+++++..+..++..+| ++..+|..+..+...++. +.+.+..+.++++.+
T Consensus 4 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAK---NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------YKEAADYFDIAIKKN 72 (228)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHhC
Confidence 345588999999888875 79999999999999999 999999999998888766 789999999999999
Q ss_pred CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh-------hHHHHHHHHHHHhhhcccccCCCCCCCchhchH
Q 014516 206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN-------SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETY 278 (423)
Q Consensus 206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~-------SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 278 (423)
|.+..+|..++.+...++. +.+.+..+.+.+..+|.|. .+|..+..+....
T Consensus 73 p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-------------------- 130 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-------------------- 130 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred cchHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh--------------------
Confidence 9999999999999988765 8899999999999999998 4566666555443
Q ss_pred HHHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHHH
Q 014516 279 QIWKEELDWNESLIKQYVG--REALWLHRRFLSMYLIK 314 (423)
Q Consensus 279 ~~~~eEL~~~~~~I~~~p~--neSaW~yrr~Ll~~l~~ 314 (423)
..+++.+++..+++..+|+ +..+|..+..+......
T Consensus 131 ~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 131 GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 1378899999999999999 88999988877654333
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.90 E-value=1.5e-07 Score=91.30 Aligned_cols=166 Identities=9% Similarity=-0.055 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++..+..++..+|++..+|+....+....+ .+++++..+..++..+|++..+|.....++...+. +
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~ 149 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENE---NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH--------Q 149 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc--------H
Confidence 578999999999999999999999999998876 78999999999999999999999999988887765 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHH----------HHHHHhcChhhHHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhh
Q 014516 192 ERESELVEKIAERSKMNYRAWNHR----------CWLVSFMTREQVLDELKKSRNWSGLHVA--DNSCFHYRRRLMLRNL 259 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR----------~wll~~~~~~~~~~EL~~~~k~i~~d~~--N~SaW~yR~~Ll~~l~ 259 (423)
.+.+.++.++++.+|.+..+|..+ ..+.... ..+++.+..+.+.+..+|. +..+|..+..+.....
T Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHHHHHHHCHHHHCC-------------------CC--HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 888999999999999998888766 3333222 3478889999999999999 7788888777666531
Q ss_pred hcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 260 EGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.+++.+++..+++..+|.+..+|..+..++.
T Consensus 228 --------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 228 --------------------EFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258 (365)
T ss_dssp --------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2678888899999999999988888766553
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.90 E-value=7.3e-08 Score=87.22 Aligned_cols=165 Identities=10% Similarity=-0.026 Sum_probs=140.0
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....++...+. +
T Consensus 39 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~ 107 (243)
T 2q7f_A 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVN---ELERALAFYDKALELDSSAATAYYGAGNVYVVKEM--------Y 107 (243)
T ss_dssp ---CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc--------H
Confidence 356777788888899999999999999988875 78999999999999999999999999888877665 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS 271 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~ 271 (423)
.+.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|.....+.....
T Consensus 108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------ 173 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--PKLALPYLQRAVELNENDTEARFQFGMCLANEG------------ 173 (243)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC------------
Confidence 889999999999999999999999888877665 889999999999999999999988887776642
Q ss_pred CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 272 GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
.+++.+.+..+++..+|.+..+|..+..+.
T Consensus 174 --------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 174 --------MLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp --------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 246778888899999999988887766554
No 29
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=3.4e-08 Score=89.81 Aligned_cols=157 Identities=10% Similarity=-0.042 Sum_probs=122.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNS----------------RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR 174 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~----------------Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr 174 (423)
..++++..+..++.++|++..+|.. ++.++...+ .+++++..+..++..+|++..+|..+.
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg 95 (208)
T 3urz_A 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR---NYDKAYLFYKELLQKAPNNVDCLEACA 95 (208)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4588999999999999999999999 999888876 799999999999999999999999999
Q ss_pred HHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
.++...+. +++.+..+.++++.+|.|..+|..++.+....+............+.+..++ +..+|.++...
T Consensus 96 ~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~ 166 (208)
T 3urz_A 96 EMQVCRGQ--------EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLS 166 (208)
T ss_dssp HHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHH
T ss_pred HHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHH
Confidence 99988876 7899999999999999999999999988755433222333444444443322 22345444443
Q ss_pred HHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516 255 MLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGRE 299 (423)
Q Consensus 255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne 299 (423)
...+ .-+++.+.+.+++|..+|+++
T Consensus 167 ~~~~--------------------~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 167 KLFT--------------------TRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHH--------------------HTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHc--------------------cCHHHHHHHHHHHHHhCCCHH
Confidence 3322 237889999999999999754
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.89 E-value=3.8e-07 Score=86.06 Aligned_cols=189 Identities=5% Similarity=-0.094 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++.++|++..+|.....++...+ .+++++..+..++..+|++..+|.....+....+.
T Consensus 106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-------- 174 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN-------- 174 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--------
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--------
Confidence 5688999999999999999999999999998876 78999999999999999999999998888777655
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc---------CCChhHHHHHHHHHHHhhhc
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH---------VADNSCFHYRRRLMLRNLEG 261 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d---------~~N~SaW~yR~~Ll~~l~~~ 261 (423)
+++.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+ +.+..+|..+..+.....
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 250 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK-- 250 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc--
Confidence 6889999999999999999999999999887765 888999999999987 666778888887776541
Q ss_pred ccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHH
Q 014516 262 FCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLM 341 (423)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l 341 (423)
.+++.+.+..+++..+|++..+|..+..+.... ++ .
T Consensus 251 ------------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~------------------~ 286 (330)
T 3hym_B 251 ------------------KYAEALDYHRQALVLIPQNASTYSAIGYIHSLM--------GN------------------F 286 (330)
T ss_dssp ------------------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--------TC------------------H
T ss_pred ------------------CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh--------cc------------------H
Confidence 267889999999999999999998876665321 11 1
Q ss_pred HHHHHHHHhhhccCccc
Q 014516 342 DHELCLVHSCSTTIADA 358 (423)
Q Consensus 342 ~~El~lv~~~~~~dp~D 358 (423)
.+=++..+.++..+|++
T Consensus 287 ~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHHccCCCc
Confidence 12245666888899988
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.87 E-value=1.3e-07 Score=85.59 Aligned_cols=166 Identities=9% Similarity=-0.013 Sum_probs=144.8
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++..+|++..+|.....+....+ .+++++..+..++..+|++..+|.....++...+.
T Consensus 72 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------- 140 (243)
T 2q7f_A 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKE---MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ-------- 140 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--------
T ss_pred CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------
Confidence 4588999999999999999999999999998875 78999999999999999999999999888877665
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+++.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|..+..+.....
T Consensus 141 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----------- 207 (243)
T 2q7f_A 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE----------- 207 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc-----------
Confidence 6889999999999999999999999888877654 788899999999999999999998888776642
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
.+++.+++..+++..+|++..+|..+..+.
T Consensus 208 ---------~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 208 ---------NREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp ---------CTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred ---------CHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 245778889999999999999998865553
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.84 E-value=1.1e-07 Score=92.37 Aligned_cols=197 Identities=9% Similarity=-0.067 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516 81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS 156 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~ 156 (423)
-|..|...|.+++......... ...-......++++..+..++.++|++..+|+....++...+ .+++++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~ 156 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS---HQQDACEAL 156 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc---cHHHHHHHH
Confidence 5788888888887643211000 000001234689999999999999999999999999998886 799999999
Q ss_pred HHHHHhCCCchhHhHHH----------HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC--CchhchHHHHHHHhcCh
Q 014516 157 ALVLSYSPKSEQAWSHR----------RWVINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWLVSFMTR 224 (423)
Q Consensus 157 ~~lL~~nPK~y~~W~hR----------rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wll~~~~~ 224 (423)
..++..+|++..+|..+ ..++... ..+.+.+.++.++++.+|. +..+|...+.+....+.
T Consensus 157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--------SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHCHHHHCC-------------------CC--------HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 99999999999998876 2222222 2378999999999999999 88899998888877655
Q ss_pred hhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 225 EQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 225 ~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
+.+.+..+.+.+..+|.+..+|..+..+..... .+++.+.+..+++..+|++..+|+.
T Consensus 229 --~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~ 286 (365)
T 4eqf_A 229 --FNRAIDAFNAALTVRPEDYSLWNRLGATLANGD--------------------RSEEAVEAYTRALEIQPGFIRSRYN 286 (365)
T ss_dssp --HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhcCCCchHHHHH
Confidence 889999999999999999999999998877642 2678899999999999999999988
Q ss_pred HHHHHH
Q 014516 305 RRFLSM 310 (423)
Q Consensus 305 rr~Ll~ 310 (423)
+..++.
T Consensus 287 l~~~~~ 292 (365)
T 4eqf_A 287 LGISCI 292 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 33
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=3.7e-08 Score=82.90 Aligned_cols=121 Identities=9% Similarity=-0.010 Sum_probs=106.0
Q ss_pred HHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHH
Q 014516 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW 237 (423)
Q Consensus 158 ~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~ 237 (423)
.+..+||+...+|.-++..+.+.+. +++.+....++++.+|.+..+|..++.+...++. +.+.+..+++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a 73 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD--------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--FQRALDDCDTC 73 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--HHHHHHHHHHH
Confidence 4556899999999999988887765 7899999999999999999999999999988876 89999999999
Q ss_pred HhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 238 SGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 238 i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
++.||.+..+|..+..++..+. -+++.+++..+++..+|+|..++...+.+
T Consensus 74 l~~~p~~~~a~~~lg~~~~~~~--------------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 74 IRLDSKFIKGYIRKAACLVAMR--------------------EWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999888752 26889999999999999999998776544
No 34
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=2.7e-08 Score=86.06 Aligned_cols=134 Identities=4% Similarity=-0.110 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++..+|++..+|.....+....+ .+++++..+..++..+|+++.+|..+..++..++.
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------- 80 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK---EYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-------- 80 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--------
Confidence 3578899999999999999999999999988875 89999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHH-HHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL-KKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL-~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
+++.+....++++.+|.+..+|...+.++...+. +.+.. .++++.++.+|.|-.+|.-+..|+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999998877654 34444 45799999999999999988887764
No 35
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.80 E-value=1.9e-06 Score=89.01 Aligned_cols=235 Identities=7% Similarity=-0.062 Sum_probs=163.2
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++..+|++..+|+....+....+ .+++++.++..++..+|++..+|+....++.+.+.
T Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 422 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN---KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE-------- 422 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence 3467888888888888888888888888777765 78888999999888899988888888877777655
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+++.+.++.++++.+|.+..+|.....+....+. +++.++.+++++..+|.|..+|.....++.+..
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 489 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNKS----------- 489 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-----------
Confidence 6788889999999999999999888888777654 788889999999999999888888877776531
Q ss_pred CCchhchHHHHHHHHHHHHHHHhh------cCCC-ccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQ------YVGR-EALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDH 343 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~------~p~n-eSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~ 343 (423)
.+++.+++..+++.. +|.+ ..+|..+..++.. . +. .++
T Consensus 490 ---------~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~----g~------------------~~~ 534 (597)
T 2xpi_A 490 ---------DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----L----KM------------------YDA 534 (597)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----T----TC------------------HHH
T ss_pred ---------CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----h----cC------------------HHH
Confidence 267778888888877 4544 4566665554422 0 11 112
Q ss_pred HHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhhhhhcchhhHHHHhhhcCcCccchhhhhhccCC
Q 014516 344 ELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYHS 421 (423)
Q Consensus 344 El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~r~~~w~~~~~~~~ 421 (423)
=++..+.++..+|++. .++..+-.+... . | +.+ ++.+++.-.-..+|.-...|..+.+.+.
T Consensus 535 A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~---~-g-~~~-----~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDA-------NVHTAIALVYLH---K-K-IPG-----LAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHSSCCH-------HHHHHHHHHHHH---T-T-CHH-----HHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCh-------HHHHHHHHHHHH---h-C-CHH-----HHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 2344556666788872 233322222211 1 2 112 3444444444668887777777666554
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.77 E-value=6.6e-07 Score=85.08 Aligned_cols=171 Identities=11% Similarity=-0.048 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc--------
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC-------- 184 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~-------- 184 (423)
++++..+..++..+|++..+|..+..+....+ .+++++..+..++..+|.+..+|.....++...+...
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44555555555555555555555555554443 4455555555555555555555555554444443300
Q ss_pred -------------------------------C--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHH
Q 014516 185 -------------------------------S--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL 231 (423)
Q Consensus 185 -------------------------------~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL 231 (423)
. .....+.+.+.++.++++.+|.+..+|.....+....+. +.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~ 174 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAI 174 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHH
Confidence 0 000123445555555555555555555555555544433 45555
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 232 KKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 232 ~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
..+.+.+..+|.+..+|..+..+.... .-+++.+.+..+++..+|.+..+|.+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQL--------------------GDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 555555555555555555555444432 125666777777777777777777665544
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.76 E-value=2.9e-07 Score=85.05 Aligned_cols=165 Identities=7% Similarity=-0.097 Sum_probs=142.1
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH----hHHHHHHHHHhhhccCh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA----WSHRRWVINMISRNCST 186 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~----W~hRrwll~~l~~~~~~ 186 (423)
..++++..+..++..+|++..+|..+..+....+ .+++++..+..++. .|++... |..+..+....+.
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~---- 89 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA---KYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ---- 89 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT---CHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc----
Confidence 4588999999999999999999999999888876 79999999999999 5555544 8888888877765
Q ss_pred hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHH-HHHHHhhhccccc
Q 014516 187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR-RLMLRNLEGFCYT 265 (423)
Q Consensus 187 ~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~-~Ll~~l~~~~~~~ 265 (423)
+.+.+..+.++++.+|.+..+|...+.+....+. +++.+..+++.+..+|.+..+|..+. .+....
T Consensus 90 ----~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~------- 156 (272)
T 3u4t_A 90 ----DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK------- 156 (272)
T ss_dssp ----HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-------
T ss_pred ----HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-------
Confidence 7899999999999999999999999999888765 89999999999999999999999988 443321
Q ss_pred CCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 266 QDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 266 ~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.+++.+++..+++..+|++..+|..+..+..
T Consensus 157 --------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 187 (272)
T 3u4t_A 157 --------------EYVKADSSFVKVLELKPNIYIGYLWRARANA 187 (272)
T ss_dssp --------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 2678899999999999999999888766653
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.76 E-value=3.5e-06 Score=80.05 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=112.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCC---CchhHhHHHH------------H
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSP---KSEQAWSHRR------------W 175 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nP---K~y~~W~hRr------------w 175 (423)
..++++.....++.++|++..+|.....+....+ .+++++..+..++..+| ++..+|.... .
T Consensus 52 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 52 KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG---KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999998876 78999999999999999 9999987663 2
Q ss_pred HHHHhhhcc-------------C-h------------hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHH
Q 014516 176 VINMISRNC-------------S-T------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLD 229 (423)
Q Consensus 176 ll~~l~~~~-------------~-~------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~ 229 (423)
++...+... + . ....+.+.+..+.++++.+|.+..+|.....+....+. +++
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~ 206 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD--HEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC--HHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHH
Confidence 222221110 0 0 01236788899999999999999999999988877665 889
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHH
Q 014516 230 ELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 230 EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
.+..+.+.+..+|.+..+|.+...+
T Consensus 207 A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHH
Confidence 9999999999999999988766543
No 39
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.75 E-value=5.5e-07 Score=86.56 Aligned_cols=165 Identities=8% Similarity=-0.035 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHc-------cCCcCC------HHHHHHHHHHHHH-hCCCchhHhHHHHHHHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KRLLPI------LMDELHLSALVLS-YSPKSEQAWSHRRWVIN 178 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~-------~~~~~~------~~~EL~~~~~lL~-~nPK~y~~W~hRrwll~ 178 (423)
.+++..++.+|..+|.+..+|..+..++.. .+ .. .++.+..+..++. .+|++..+|....-++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 688899999999999999999999988753 23 11 3789999999999 69999999999988887
Q ss_pred HhhhccChhHHhHHHHHHHHHHHHHhcCCCch-hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 179 MISRNCSTLQWIIERESELVEKIAERSKMNYR-AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
..+. +++...+.+++++.+|.+.. +|.....+....+. +++....+.+.+..+|.+.+.|.....+-..
T Consensus 111 ~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 111 SRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HTTC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred hcCC--------HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7664 67888999999999999987 99988777766543 7788999999999999988887644333221
Q ss_pred hhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 258 NLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
..+ -+++......+++..+|++..+|.....+
T Consensus 181 ~~~-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 212 (308)
T 2ond_A 181 CSK-------------------DKSVAFKIFELGLKKYGDIPEYVLAYIDY 212 (308)
T ss_dssp TSC-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcC-------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 111 25677788889999999999999765444
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.74 E-value=2.3e-06 Score=82.23 Aligned_cols=164 Identities=8% Similarity=-0.011 Sum_probs=136.3
Q ss_pred chHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516 111 LAIEVMIHSKALLLL--SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ 188 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~--nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~ 188 (423)
..+++++..+.++.. +|++.++|...+.++...+ .+++++..+.. |.+..+|..+..++.+++.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g---~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~------ 145 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ---NPDAALRTLHQ-----GDSLECMAMTVQILLKLDR------ 145 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT---CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC------
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC---CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC------
Confidence 358899999998876 6999999999999998876 78999988877 9999999999999888776
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN 268 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~ 268 (423)
+++.+..+.++++.+|.+...-....|+--..+...+++.+...++++..+|.+..+|..+..++.++.
T Consensus 146 --~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------- 214 (291)
T 3mkr_A 146 --LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG--------- 214 (291)
T ss_dssp --HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT---------
T ss_pred --HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------
Confidence 688999999999999987644333445433333345889999999999999999999999998887752
Q ss_pred CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
-+++..+...+++..+|+|..+|.++..++.
T Consensus 215 -----------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 215 -----------RWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2788899999999999999999999766553
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.73 E-value=1.5e-06 Score=81.74 Aligned_cols=167 Identities=8% Similarity=-0.096 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....++...+. +
T Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~ 105 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A 105 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC--------H
Confidence 578999999999999999999999999888875 78999999999999999999999999888877665 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHH----------H---hcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLV----------S---FMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll----------~---~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
.+.+..+.++++.+|.+..+|....-.. . ......+.+.+..+.+.+..+|.+..+|..+..+....
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999998887751111 1 12233578889999999999999999998888777654
Q ss_pred hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 259 LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
. .+++.+++..+++..+|.+..+|..+..++
T Consensus 186 ~--------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 186 N--------------------NYDSAAANLRRAVELRPDDAQLWNKLGATL 216 (327)
T ss_dssp T--------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred c--------------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 1 267888899999999999998888766554
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.72 E-value=1.5e-06 Score=77.22 Aligned_cols=163 Identities=7% Similarity=-0.041 Sum_probs=136.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc-CCcCCHHHHHHHHHHHHH--hCCCchhHhHHHHHHHHHhhhccChh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK-RLLPILMDELHLSALVLS--YSPKSEQAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~-~~~~~~~~EL~~~~~lL~--~nPK~y~~W~hRrwll~~l~~~~~~~ 187 (423)
..++++.....++..+|++..+|.....++... + .+++.+..+..++. .+|....+|.....++...+.
T Consensus 57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 128 (225)
T 2vq2_A 57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN---RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ----- 128 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-----
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-----
Confidence 358899999999999999999999999998887 6 78999999999999 778888999999888877665
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC-CChhHHHHHHHHHHHhhhcccccC
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV-ADNSCFHYRRRLMLRNLEGFCYTQ 266 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~-~N~SaW~yR~~Ll~~l~~~~~~~~ 266 (423)
+++.+.++.++++.+|.+..+|.....+....+. +.+.+..+++.+..+| .+..+|.....+.... +
T Consensus 129 ---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 196 (225)
T 2vq2_A 129 ---FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-G------ 196 (225)
T ss_dssp ---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T------
T ss_pred ---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C------
Confidence 6889999999999999999999999888877655 7889999999999999 8888876555444332 1
Q ss_pred CCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516 267 DNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306 (423)
Q Consensus 267 ~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr 306 (423)
..++...+...++..+|++..++.++.
T Consensus 197 -------------~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 197 -------------NAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp -------------CHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred -------------cHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 245667778888889999998877653
No 43
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.71 E-value=1.4e-06 Score=88.52 Aligned_cols=162 Identities=7% Similarity=-0.006 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++.++|+ ..+|.....++...+ .+.+.+..+..++..+|++..+|..+..++...+.
T Consensus 258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 325 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKE---NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-------- 325 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhc---CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC--------
Confidence 347899999999999999 899999998887765 78999999999999999999999999999887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+...+..+.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|..+..+.....
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 392 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILTDRG----------- 392 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-----------
Confidence 7899999999999999999999999999988765 889999999999999999999999988877642
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr 306 (423)
-+++.+.+..+++..+|.+..+|....
T Consensus 393 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 393 ---------DFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred ---------CHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 267888899999999998888775543
No 44
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=3.8e-07 Score=95.25 Aligned_cols=163 Identities=9% Similarity=-0.119 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+++++.+..++..+|++..+|+....++...+ .+++++..+..++..+|++..+|.....++...+. +
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~ 73 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------H 73 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 367888899999999999999999999998875 79999999999999999999999999999888765 7
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS 271 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~ 271 (423)
++.+..+.++++.+|.+..+|.....+....+. +++.++.+++.++.+|.+..+|..+..+...+..-
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---------- 141 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW---------- 141 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcc----------
Confidence 899999999999999999999999999888765 88999999999999999999999888877764100
Q ss_pred CchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 272 GYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
.-+++.+++..+++..+|++.++|+.
T Consensus 142 -------g~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 142 -------RALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp -------TTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred -------ccHHHHHHHHHHHHhcCCcccChHHH
Confidence 12677888999999999999888854
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.70 E-value=5.6e-07 Score=81.73 Aligned_cols=161 Identities=5% Similarity=-0.042 Sum_probs=114.4
Q ss_pred chHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH----------------------
Q 014516 111 LAIEVMIHSKALLLLSCDF-------ATAWNSRKLIVSNKRLLPILMDELHLSALVLS---------------------- 161 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~-------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~---------------------- 161 (423)
..++++.....++.++|++ ..+|.....+....+ .+++++..+..++.
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG---DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence 3578888888888888877 688888888888775 67788888888887
Q ss_pred ----hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHH
Q 014516 162 ----YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW 237 (423)
Q Consensus 162 ----~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~ 237 (423)
.+|.+..+|..+..++...+. +.+.+..+.++++.+|.+..+|...+.+....+. +++.+..+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a 199 (258)
T 3uq3_A 130 AEAYVNPEKAEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKA 199 (258)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 556666666666666655543 5677777777777777777777777777666544 66777777777
Q ss_pred HhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc------CCCccHHHH
Q 014516 238 SGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY------VGREALWLH 304 (423)
Q Consensus 238 i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~------p~neSaW~y 304 (423)
+..+|.+..+|..+..+...+. -+++.+++..+++..+ |.|..++..
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVK--------------------EYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 7777777777777766665531 1456666667777766 666665554
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.70 E-value=1.4e-06 Score=79.51 Aligned_cols=165 Identities=8% Similarity=-0.043 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|.....+....+ .+++++..+..++..+|.+..+|.....++...+. +
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------~ 121 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEM---EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR--------Y 121 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH--------H
Confidence 467889999999999999999999999988875 78999999999999999999999999888877655 6
Q ss_pred HHHHHHHHHHHH--hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516 192 ERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN 269 (423)
Q Consensus 192 ~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~ 269 (423)
.+.+.++.++++ .+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|.....+.....
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------- 189 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFEKSLRLNRNQPSVALEMADLLYKER---------- 189 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC----------
Confidence 889999999999 899999999999988877655 789999999999999999999888777766531
Q ss_pred CCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 270 SSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
-+++.+.+..+++..+|.+..+|.....+.
T Consensus 190 ----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 190 ----------EYVPARQYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp ----------CHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 267788899999999999988877654443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.70 E-value=1.6e-06 Score=79.26 Aligned_cols=162 Identities=9% Similarity=-0.061 Sum_probs=141.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH--hCCCchhHhHHHHHHHHHhhhccChhH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLS--YSPKSEQAWSHRRWVINMISRNCSTLQ 188 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~--~nPK~y~~W~hRrwll~~l~~~~~~~~ 188 (423)
..++++.....++..+|++..+|.....++...+ .+++++.++..++. .+|.+..+|.....++...+.
T Consensus 86 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------ 156 (252)
T 2ho1_A 86 EPKLADEEYRKALASDSRNARVLNNYGGFLYEQK---RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK------ 156 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC------
T ss_pred CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC------
Confidence 4688999999999999999999999999988875 78999999999999 899999999999888877665
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN 268 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~ 268 (423)
+++.+.++.++++.+|.+..+|.....+....+. +.+.+..+.+.+..+|.+..+|..+..+.....
T Consensus 157 --~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------- 223 (252)
T 2ho1_A 157 --PAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE--------- 223 (252)
T ss_dssp --HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT---------
T ss_pred --HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc---------
Confidence 6889999999999999999999988888877654 788999999999999999998887777666531
Q ss_pred CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
-+++..++..+++..+|++..++.++
T Consensus 224 -----------~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 224 -----------DRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 25678888999999999999887764
No 48
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.70 E-value=1.6e-06 Score=83.47 Aligned_cols=91 Identities=9% Similarity=0.006 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++..+..++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....++...+. +
T Consensus 80 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--------~ 148 (368)
T 1fch_A 80 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTNESL--------Q 148 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------H
Confidence 456666666666777777777776666666654 56666777777777777776666666666655443 3
Q ss_pred HHHHHHHHHHHHhcCCCchhch
Q 014516 192 ERESELVEKIAERSKMNYRAWN 213 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~ 213 (423)
.+.+..+.++++.+|.+..+|.
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC
T ss_pred HHHHHHHHHHHHhCcCcHHHHH
Confidence 4444455555555555444443
No 49
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.69 E-value=1.4e-06 Score=89.93 Aligned_cols=167 Identities=6% Similarity=-0.074 Sum_probs=145.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..+++++.+..++.++|++..+|+....++...+ .+++++.++..++..+|++..+|+....++.+.+.
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 456 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG---EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN-------- 456 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------
Confidence 4588999999999999999999999999888876 78999999999999999999999999988887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------cCCC-hhHHHHHHHHHHHhhhccc
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------HVAD-NSCFHYRRRLMLRNLEGFC 263 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------d~~N-~SaW~yR~~Ll~~l~~~~~ 263 (423)
+++.+.+..++++.+|.+..+|.....++...+. +++.++.+++++.. +|.+ ..+|..+..++.+..
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g---- 530 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK---- 530 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc----
Confidence 7899999999999999999999999999888765 88899999999988 6665 578888887776641
Q ss_pred ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.+++.+++..+++..+|.+..+|..+..++.
T Consensus 531 ----------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 531 ----------------MYDAAIDALNQGLLLSTNDANVHTAIALVYL 561 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3678899999999999999999988766653
No 50
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.69 E-value=2e-06 Score=82.86 Aligned_cols=196 Identities=10% Similarity=-0.037 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516 81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS 156 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~ 156 (423)
-|..|...|.++++........ ...-......++++.....++.++|++..+|..+..+....+ .+++++..+
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 155 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES---LQRQACEIL 155 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 4778888888877632111000 000001234578999999999999999999999999998876 789999999
Q ss_pred HHHHHhCCCchhHhHHH----------------HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC--CchhchHHHHH
Q 014516 157 ALVLSYSPKSEQAWSHR----------------RWVINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWL 218 (423)
Q Consensus 157 ~~lL~~nPK~y~~W~hR----------------rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wl 218 (423)
..++..+|++..+|..+ ..++ .. ..+.+.+.++.++++.+|. +..+|.....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD--------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp HHHHHTSTTTGGGCC---------------CTTHHHH-HH--------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc--------ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 99999999999999754 1122 22 2378899999999999999 78888888888
Q ss_pred HHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCC
Q 014516 219 VSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGR 298 (423)
Q Consensus 219 l~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~n 298 (423)
....+. +++.+..+.+.+..+|.+..+|..+..+..... -+++.+.+..+++..+|.+
T Consensus 227 ~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 227 FNLSGE--YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN--------------------QSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTC
T ss_pred HHHcCC--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCc
Confidence 877655 889999999999999999999999988877642 2678899999999999999
Q ss_pred ccHHHHHHHHHH
Q 014516 299 EALWLHRRFLSM 310 (423)
Q Consensus 299 eSaW~yrr~Ll~ 310 (423)
..+|..+..+..
T Consensus 285 ~~~~~~l~~~~~ 296 (368)
T 1fch_A 285 IRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888766653
No 51
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=9.7e-07 Score=80.13 Aligned_cols=174 Identities=10% Similarity=-0.048 Sum_probs=140.3
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc-------hhHhHHHHHHHHHhhhc
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS-------EQAWSHRRWVINMISRN 183 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~-------y~~W~hRrwll~~l~~~ 183 (423)
..++++.....++..+ ++..+|..+..+....+ .+++++..+..++..+|++ ..+|.....++..++..
T Consensus 20 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 20 QFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG---EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp CHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 3588999999999999 99999999999998886 7999999999999999887 68888888887766542
Q ss_pred cCh------------------hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516 184 CST------------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 184 ~~~------------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~ 245 (423)
... ....+.+.+..+.+++..+|.+..+|...+.+....+. +.+.+..+++.+..+|.+.
T Consensus 96 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~ 173 (258)
T 3uq3_A 96 KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRAPEDA 173 (258)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcccH
Confidence 110 00113344455566666899999999999998877755 8899999999999999999
Q ss_pred hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 246 SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 246 SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.+|..+..+..... -+++.+.+..+++..+|++..+|..+..++.
T Consensus 174 ~~~~~l~~~~~~~~--------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 174 RGYSNRAAALAKLM--------------------SFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999888776642 2678899999999999999998888766553
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.67 E-value=1.8e-06 Score=85.81 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH------------HHHHH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR------------WVINM 179 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr------------wll~~ 179 (423)
.++++..+..++..+|++..+|+....+....+ .+++++..+..++..+|.+..+|.... .++..
T Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLG---DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777777666654 667777777777777777777776542 22222
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHhcCCC----chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516 180 ISRNCSTLQWIIERESELVEKIAERSKMN----YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN----Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll 255 (423)
.+ .+.+.+.++.++++.+|.+ ..+|.....++...+. +.+.+..+.+++..+|.+..+|..+..++
T Consensus 270 ~g--------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 270 DG--------RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HT--------CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cC--------CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 22 2678889999999999998 4467777777776654 88999999999999999999999999888
Q ss_pred HHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516 256 LRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY 311 (423)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~ 311 (423)
.... .+++.+.+..+++..+|++..+|..+..+...
T Consensus 340 ~~~~--------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 340 LIEE--------------------MYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHTT--------------------CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhc--------------------CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 7642 36788999999999999999999988766543
No 53
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.1e-07 Score=83.23 Aligned_cols=113 Identities=10% Similarity=-0.048 Sum_probs=104.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHH
Q 014516 119 SKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV 198 (423)
Q Consensus 119 t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~ 198 (423)
...++.++|++..+|..++.++...+ .+++++..+..++..+|+++.+|.....++..++. +++.+..+
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--------~~~Ai~~~ 93 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--------FQQAADLY 93 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------HHHHHHHH
Confidence 45677899999999999999998876 89999999999999999999999999999998876 78999999
Q ss_pred HHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
.++++.+|.|..+|.+.+-++..++. +++.+..+++.+..+|..
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999998876 889999999999998864
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.66 E-value=1.2e-06 Score=75.05 Aligned_cols=156 Identities=9% Similarity=-0.031 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|.....+....+ ..++.+..+..++..+|.+..+|.....++...+. +
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~ 92 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG---AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK--------Y 92 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------H
Confidence 478888999999999999999999999888775 78999999999999999999999999888877665 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS 271 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~ 271 (423)
.+.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|.....+.....
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------ 158 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG------------ 158 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC------------
Confidence 888999999999999999999999988877655 788999999999999999988888877766531
Q ss_pred CchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 272 GYFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
.+++.+.+..+++..+|++..
T Consensus 159 --------~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 159 --------RHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------CHHHHHHHHHHHHHHHHCCCG
T ss_pred --------CHHHHHHHHHHHHHcCCCchh
Confidence 267788888888888888754
No 55
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.66 E-value=1.9e-07 Score=80.55 Aligned_cols=134 Identities=9% Similarity=-0.038 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
.++++.+..+..++..+|+++.+|.+...+....+. ++..+..+.++++.+|+|..+|...+.+...++.
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-- 80 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------YDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-- 80 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence 367889999999999999999999998888877765 7899999999999999999999999999988865
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHH-HHHHHHHhhcCCCccHHHHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEEL-DWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL-~~~~~~I~~~p~neSaW~yr 305 (423)
+++.+....+.++.+|.|..+|..+..++..... +.+.. .++++++..+|+|..+|..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------------~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--------------------TDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--------------------SSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 8899999999999999999999999988877522 12233 35688999999999999887
Q ss_pred HHHHH
Q 014516 306 RFLSM 310 (423)
Q Consensus 306 r~Ll~ 310 (423)
..|+.
T Consensus 141 ~~ll~ 145 (150)
T 4ga2_A 141 EQLLD 145 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 56
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.66 E-value=3.3e-06 Score=83.81 Aligned_cols=167 Identities=7% Similarity=-0.100 Sum_probs=138.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..++..+|++..+|+.+..++...+ .+++++..+..++..+|++..+|.....++...+.
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 226 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-------- 226 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence 4578899999999999999999999999998876 78899999999999999999999999998887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHH------------HHHHHhcChhhHHHHHHHHHHHHhccCCChh----HHHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHR------------CWLVSFMTREQVLDELKKSRNWSGLHVADNS----CFHYRRRL 254 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR------------~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S----aW~yR~~L 254 (423)
+++.+.++.++++.+|.+..+|... ..+....+ .+.+.+..+.+++..+|.|.. +|..+..+
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG--RYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 6889999999999999999988765 33333333 478899999999999999855 44444444
Q ss_pred HHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 255 MLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
+.+. ..+++.+.++.+++..+|++..+|..+..++.
T Consensus 305 ~~~~--------------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 305 FSKD--------------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHTT--------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHC--------------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4332 13678899999999999999999988776653
No 57
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.63 E-value=1.8e-06 Score=81.32 Aligned_cols=200 Identities=11% Similarity=-0.065 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516 81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS 156 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~ 156 (423)
-|..|...|.+++......... ...-......++++.....++.++|++..+|.....+....+ .+++++..+
T Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~ 112 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH---NANAALASL 112 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 4677777777766532210000 000001234588999999999999999999999999988875 789999999
Q ss_pred HHHHHhCCCchhHhHHHHHHH----------HH-hhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516 157 ALVLSYSPKSEQAWSHRRWVI----------NM-ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225 (423)
Q Consensus 157 ~~lL~~nPK~y~~W~hRrwll----------~~-l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~ 225 (423)
..++..+|++..+|....-.+ .. +.. ....+.+.+.++.++++.+|.+..+|.....+....+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~- 187 (327)
T 3cv0_A 113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA----APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN- 187 (327)
T ss_dssp HHHHHTSTTTTTC--------------------CCTT----SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH----HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-
Confidence 999999999999887761111 11 000 01237889999999999999999999999998877765
Q ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
+++.+..+.+.+..+|.+..+|..+..+..... .+++.+.+..+++..+|.+..+|..+
T Consensus 188 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~~~~~~~~~~l 246 (327)
T 3cv0_A 188 -YDSAAANLRRAVELRPDDAQLWNKLGATLANGN--------------------RPQEALDAYNRALDINPGYVRVMYNM 246 (327)
T ss_dssp -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 889999999999999999999999888877641 26788899999999999999988876
Q ss_pred HHHH
Q 014516 306 RFLS 309 (423)
Q Consensus 306 r~Ll 309 (423)
..+.
T Consensus 247 ~~~~ 250 (327)
T 3cv0_A 247 AVSY 250 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 58
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=5.6e-07 Score=77.66 Aligned_cols=122 Identities=8% Similarity=-0.146 Sum_probs=108.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHH
Q 014516 119 SKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV 198 (423)
Q Consensus 119 t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~ 198 (423)
+..++.++|++..+|..+..++...+ .+.+++..+..++..+|.++.+|..+..++..++. +++.+..+
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~ 78 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSG---XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--------YDLAIHSY 78 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--------HHHHHHHH
Confidence 56778899999999999999988875 79999999999999999999999999999988776 78999999
Q ss_pred HHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHH
Q 014516 199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRR 253 (423)
Q Consensus 199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~ 253 (423)
.+++..+|.+..+|.+.+.++..++. +++.+..+.+.+..+|.|-.....+..
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXGE--LAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 99999999999999999999988876 789999999999999987655444443
No 59
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.61 E-value=1.8e-06 Score=86.53 Aligned_cols=223 Identities=4% Similarity=-0.166 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCC---------CC-----CCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCc
Q 014516 81 VYKAAKHAFISALRQYKTPGNFSG---------KS-----QDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLL 146 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~~~---------~~-----~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~ 146 (423)
-|..|...|.+++..++....... .+ ......++++.++.++|.++|++..++.....+...++..
T Consensus 109 ~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 367777777777665443322110 00 0112357899999999999999999999888775443212
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
...++.+..+..++..+|++..++......+..+.... ..+.+.+.++.++++.+|.+..+|...+.+....+.
T Consensus 189 ~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~----~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-- 262 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG----EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-- 262 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--
Confidence 34567889999999999999999999888777665432 225677889999999999999999999999888765
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr 306 (423)
+.+.+....+.++.+|.+..+|+.+..+........... .....+........++..+....+++..+|.+..+|..+.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg 341 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL-RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence 889999999999999999999988876654321110000 0000001112234567788888999999999999998876
Q ss_pred HHHH
Q 014516 307 FLSM 310 (423)
Q Consensus 307 ~Ll~ 310 (423)
.+..
T Consensus 342 ~~~~ 345 (472)
T 4g1t_A 342 SLHA 345 (472)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.60 E-value=3e-06 Score=77.96 Aligned_cols=158 Identities=8% Similarity=-0.046 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516 112 AIEVMIHSKALLLL----SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 112 ~~~~L~~t~~lLl~----nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~ 187 (423)
.++++..+..++.. +|.+..+|..+..+....+ .+++++..+..++..+|++..+|.....++...+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----- 92 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN----- 92 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC-----
Confidence 34555555555554 3456667777777666654 56777777777777777777777777766665544
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
+.+.+.++.++++.+|.+..+|...+.+....+. +++.+..+.+.+..+|.+.......... ...
T Consensus 93 ---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------- 157 (275)
T 1xnf_A 93 ---FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK--------- 157 (275)
T ss_dssp ---HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------
T ss_pred ---HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------
Confidence 5667777777777777777777777777666544 6667777777777777766443333222 110
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHH
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWL 303 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~ 303 (423)
.-+++.+.+..+++...|.+...|.
T Consensus 158 -----------~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (275)
T 1xnf_A 158 -----------LDEKQAKEVLKQHFEKSDKEQWGWN 182 (275)
T ss_dssp -----------HCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred -----------cCHHHHHHHHHHHHhcCCcchHHHH
Confidence 1245566666666666676655543
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.8e-06 Score=86.86 Aligned_cols=165 Identities=8% Similarity=-0.085 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++.++|++..+|.....++...+ .+++.+..+..++..+|.+..+|.....++...+. +
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~ 388 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYREN---KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND--------F 388 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--------H
Confidence 356666777777777777777777776666554 67888888888888888888888888887777655 6
Q ss_pred HHHHHHHHHHHHhcCCCch------hchHHHHHHHh---cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc
Q 014516 192 ERESELVEKIAERSKMNYR------AWNHRCWLVSF---MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF 262 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~---~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~ 262 (423)
++.+..+.++++.+|.+.. +|...+.+... .+. +++.+..+.+.+..+|.+..+|..+..+.....
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--- 463 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN--FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE--- 463 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc---
Confidence 8889999999999999866 89999888877 654 889999999999999999999988888776642
Q ss_pred cccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 263 CYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
.+++.+++..+++..+|++..+|....++.
T Consensus 464 -----------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 464 -----------------DIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp -----------------CHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 267889999999999999999999876654
No 62
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.1e-06 Score=72.27 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
|+...+|..++..+...+ .+++++..+..++..+|++..+|..+..++..++. +.+.+..+.++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKS---DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------FPEAIADCNKAIEKDP 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence 456778888888887775 78999999999999999999999999999888766 7889999999999999
Q ss_pred CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc------CCChhHHHHHHHHHHH
Q 014516 207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH------VADNSCFHYRRRLMLR 257 (423)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d------~~N~SaW~yR~~Ll~~ 257 (423)
.+..+|..++.+...++. +.+.+..+.+.+..+ |.|..++.....+..+
T Consensus 70 ~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999888765 788999999999999 8888888777766544
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.57 E-value=4.5e-06 Score=80.09 Aligned_cols=164 Identities=5% Similarity=-0.115 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh-HhHHHHHHHHHhhhccChhHH
Q 014516 112 AIEVMIHSKALLL-LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ-AWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 112 ~~~~L~~t~~lLl-~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~-~W~hRrwll~~l~~~~~~~~~ 189 (423)
.++++..++.++. ++|++..+|.....++...+ .+++....++.++..+|+++. +|.....++.+.+.
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~------- 149 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG------- 149 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-------
Confidence 3789999999999 79999999999999998875 789999999999999999998 99998888777655
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHh-cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSF-MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN 268 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~-~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~ 268 (423)
+++...+..++++.+|.++++|.-...+-.. .+ ..+.....+++.+..+|.+..+|.....++.+..
T Consensus 150 -~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g--------- 217 (308)
T 2ond_A 150 -IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN--------- 217 (308)
T ss_dssp -HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---------
Confidence 6788999999999999999998755544322 23 3778899999999999999999987776665431
Q ss_pred CCCCchhchHHHHHHHHHHHHHHHhh---cCC-CccHHHHHHHH
Q 014516 269 NSSGYFVETYQIWKEELDWNESLIKQ---YVG-REALWLHRRFL 308 (423)
Q Consensus 269 ~~~~~~~~~~~~~~eEL~~~~~~I~~---~p~-neSaW~yrr~L 308 (423)
-+++......+++.. .|+ +..+|.....+
T Consensus 218 -----------~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 218 -----------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp -----------CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 256677788888885 553 77788765443
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.56 E-value=1.3e-05 Score=74.46 Aligned_cols=180 Identities=9% Similarity=-0.097 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhcc
Q 014516 111 LAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNC 184 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~ 184 (423)
..++++..+..++..+|++ ..+|..++.+....+ .+.+++..+..++..+|++ ..++..+..+........
T Consensus 30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK---EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 3588999999999999999 899999999998886 8999999999999998865 567778887776611000
Q ss_pred ChhHHhHHHHHHHHHHHHHhcCCCchhc-----------------hHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh--
Q 014516 185 STLQWIIERESELVEKIAERSKMNYRAW-----------------NHRCWLVSFMTREQVLDELKKSRNWSGLHVADN-- 245 (423)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW-----------------~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~-- 245 (423)
..-...+.+.+..+.++++.+|.+-.++ ...+.+....+. +.+.+..+++.+..+|.+.
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~ 184 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWA 184 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTH
T ss_pred cccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchH
Confidence 0001127899999999999999998888 555666655544 8899999999999999854
Q ss_pred -hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516 246 -SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR 305 (423)
Q Consensus 246 -SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr 305 (423)
.++..+..+...+..... ......-+++.+....+++..+|++..+..-+
T Consensus 185 ~~a~~~l~~~~~~~g~~~~----------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 185 DDALVGAMRAYIAYAEQSV----------RARQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp HHHHHHHHHHHHHHHHTSC----------GGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccch----------hhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 477777776665421100 00112457889999999999999987655443
No 65
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=5e-07 Score=76.66 Aligned_cols=124 Identities=10% Similarity=-0.163 Sum_probs=107.5
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516 118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (423)
Q Consensus 118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (423)
....++.++|++..++..+...+...+ .+.+++..+..++..+|+++.+|.....++...+. +++.+..
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~ 74 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAG---KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--------YEQALQS 74 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--------HHHHHHH
Confidence 355677889999999999999888775 79999999999999999999999999999888776 7899999
Q ss_pred HHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
+.++++.+|.+..+|.+.+.++..++. +++.+..+++.+..+|.|-..+..+..+
T Consensus 75 ~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 75 YSYGALMDINEPRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999988876 8899999999999999887665554443
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.55 E-value=1.3e-05 Score=80.32 Aligned_cols=204 Identities=7% Similarity=-0.145 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCC-CCCC------------CccchHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 014516 80 PVYKAAKHAFISALRQYKTPGNFS-GKSQ------------DDTLAIEVMIHSKALLLLS--------CDFATAWNSRKL 138 (423)
Q Consensus 80 ~lY~~A~~~f~~~l~~y~~~~~~~-~~~~------------~~~~~~~~L~~t~~lLl~n--------Pe~~TaWn~Rk~ 138 (423)
.-|.+|...|.+++..++...... .... .....++++....+++.++ +++..+++.++.
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 357888888888776433211100 0000 1123577888888888874 456788888887
Q ss_pred HHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHH
Q 014516 139 IVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWL 218 (423)
Q Consensus 139 lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wl 218 (423)
.+...+ ...+++++.++..++..+|+++.+|.....+...+..... .++.++.+.++++.+|.+..++......
T Consensus 145 ~~~~~~-~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-----~~~al~~~~~al~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 145 TRLKCG-GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-----SQNAIDPLRQAIRLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHC-TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC-----CCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHc-cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH-----HHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence 776554 3468999999999999999999999888877766654321 2456788899999999999999998887
Q ss_pred HHhcCh--hhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcC
Q 014516 219 VSFMTR--EQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYV 296 (423)
Q Consensus 219 l~~~~~--~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p 296 (423)
+..+.. ....+.+..+++.+..+|.+..+|..+..+..... .+++.+++..+++..+|
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~--------------------~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD--------------------EPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHST
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC--------------------chHHHHHHHHHHHHhCC
Confidence 766643 23567788999999999999999999988877642 36788999999999999
Q ss_pred CCccHHHHHHHHH
Q 014516 297 GREALWLHRRFLS 309 (423)
Q Consensus 297 ~neSaW~yrr~Ll 309 (423)
++..+|+.+..+.
T Consensus 279 ~~~~~~~~lg~~y 291 (472)
T 4g1t_A 279 NNAYLHCQIGCCY 291 (472)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 9999998876554
No 67
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.53 E-value=2.8e-06 Score=86.25 Aligned_cols=178 Identities=6% Similarity=-0.055 Sum_probs=144.6
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
...++++..+..++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....++...+.
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~------- 359 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ---DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK------- 359 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-------
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence 34588999999999999999999999999998876 79999999999999999999999999999888766
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHH------HHHHHhhhccc
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR------RLMLRNLEGFC 263 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~------~Ll~~l~~~~~ 263 (423)
+.+.+.++.++++.+|.+..+|...+.+....+. +.+.+..+.+.+..+|.+...|.... .++......
T Consensus 360 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 434 (537)
T 3fp2_A 360 -FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ-- 434 (537)
T ss_dssp -HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred -HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc--
Confidence 7899999999999999999999999999988765 88899999999999887766654332 333322000
Q ss_pred ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.. .......+++.+.+..+++..+|++..+|..+..+..
T Consensus 435 ---~~-----~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 435 ---DP-----TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---cc-----hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 00 0000135788999999999999999999888766653
No 68
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.53 E-value=6.7e-06 Score=82.64 Aligned_cols=165 Identities=9% Similarity=0.006 Sum_probs=142.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..++..+|+ ..+|..+..+....+ .+++++..+..++..+|++..+|..+..++...+.
T Consensus 252 ~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 319 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN---DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-------- 319 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS---CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC---CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC--------
Confidence 468899999999999999 999999999988876 67889999999999999999999999998887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+++.+..+.++++.+|.+..+|.....+....+. +.+.+..+.+.+..+|.+..+|..+..+.....
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----------- 386 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN----------- 386 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC-----------
Confidence 5788899999999999999999998888776654 889999999999999999999999888777642
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCcc------HHHHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREA------LWLHRRFLS 309 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neS------aW~yrr~Ll 309 (423)
.+++.+.+..+++..+|.+.. +|..+..++
T Consensus 387 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 387 ---------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 267788889999999999876 777765544
No 69
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=2.1e-06 Score=74.25 Aligned_cols=117 Identities=13% Similarity=-0.012 Sum_probs=104.3
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
+++...+|..+..++...+ .+++++..+..++..+|++..+|..+..++..++. +.+.+..+.++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARK---EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD 75 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC
Confidence 4667788889998888775 79999999999999999999999999999988776 789999999999999
Q ss_pred CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516 206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255 (423)
Q Consensus 206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll 255 (423)
|.+..+|..+..++..++. +++.+..+.+.+..+|.|..+|..+....
T Consensus 76 p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999988765 88999999999999999999988776553
No 70
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.50 E-value=1.8e-06 Score=79.64 Aligned_cols=168 Identities=6% Similarity=-0.143 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH-HHHHHhhhccChhHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR-WVINMISRNCSTLQW 189 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr-wll~~l~~~~~~~~~ 189 (423)
..++++.....++.++|++..+|.....+....+ .+++++..+..++..+|.+..+|..+. .+.... .
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~------- 157 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E------- 157 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C-------
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H-------
Confidence 3578888889999999999999998888888775 788889999999988999999988888 444432 2
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh-HHHHHHHHHHHHhcc---CCC-----hhHHHHHHHHHHHhhh
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ-VLDELKKSRNWSGLH---VAD-----NSCFHYRRRLMLRNLE 260 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~-~~~EL~~~~k~i~~d---~~N-----~SaW~yR~~Ll~~l~~ 260 (423)
+++.+..+.++++.+|.+..+|..+..+...++... +...+...++.+... +.. ..+|.+...+....
T Consensus 158 -~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 234 (272)
T 3u4t_A 158 -YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN-- 234 (272)
T ss_dssp -HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT--
T ss_pred -HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc--
Confidence 678888889999999999888888888877765311 333455555555543 432 14555555554442
Q ss_pred cccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 261 GFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
.-+++.+++..+++..+|+|..+|-..+.+..
T Consensus 235 ------------------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 235 ------------------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp ------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred ------------------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 13688999999999999999999988766543
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.45 E-value=3.7e-07 Score=98.35 Aligned_cols=132 Identities=6% Similarity=-0.199 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..+++++.++.++.++|++..+|+.++.++...+ .+++++..+..++..+|+++.+|..+..++..++.
T Consensus 448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-------- 516 (681)
T 2pzi_A 448 DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG---DYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-------- 516 (681)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------
Confidence 4588999999999999999999999999998876 79999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLML 256 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~ 256 (423)
+++ +..+.++++.+|.+..+|..++.++..++. +++.++.+++.+..+|.+..+|..+..++.
T Consensus 517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 456 889999999999999999999999988776 889999999999999999999998887753
No 72
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=1.3e-06 Score=76.35 Aligned_cols=113 Identities=9% Similarity=-0.093 Sum_probs=101.8
Q ss_pred HHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHH
Q 014516 157 ALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN 236 (423)
Q Consensus 157 ~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k 236 (423)
..++..+|++..+|.....++.+.+. +++.+.++.++++.+|.|..+|...+.++..++. +++.+..+.+
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~Ai~~~~~ 95 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGR--------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--FQQAADLYAV 95 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 56677899999999999999988776 7899999999999999999999999999988876 8999999999
Q ss_pred HHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516 237 WSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGRE 299 (423)
Q Consensus 237 ~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne 299 (423)
.+..+|.|..+|.++..++..+. -+++.+.+..+++..+|+..
T Consensus 96 al~l~P~~~~~~~~lg~~~~~lg--------------------~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLRLK--------------------APLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCCCHH
T ss_pred HHhhCCCCcHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999888752 26889999999999998764
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.40 E-value=1.7e-05 Score=71.68 Aligned_cols=115 Identities=3% Similarity=-0.053 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH----------------HHHHHHHhhhccChhHHhHHH
Q 014516 130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH----------------RRWVINMISRNCSTLQWIIER 193 (423)
Q Consensus 130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h----------------Rrwll~~l~~~~~~~~~~~~~ 193 (423)
...+..++..+...+ .+++++..+..++..+|++..+|.. +..++...+. +++
T Consensus 4 ~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~ 72 (208)
T 3urz_A 4 VDEMLQKVSAAIEAG---QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDK 72 (208)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHH
Confidence 344556666666654 7999999999999999999999999 8888777665 789
Q ss_pred HHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 194 ESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 194 EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
.+..+.++++.+|.+..+|..++.+....+. +++.+..+++.+..+|.|..+|..+..+...
T Consensus 73 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 73 AYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999887765 8899999999999999999999999987654
No 74
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.37 E-value=6.8e-06 Score=70.72 Aligned_cols=124 Identities=6% Similarity=-0.125 Sum_probs=107.1
Q ss_pred HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS 234 (423)
Q Consensus 155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (423)
.+..++..+|++..+|.....++...+. +.+.+....+++..+|.|..+|..++.+....+. +++.+..+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~ 78 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGX--------YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--YDLAIHSY 78 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence 3567888999999999999988887765 7899999999999999999999999999988765 89999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
.+.+..+|.|..+|.++..++..+. -+++.+.+..+++..+|++......+..+
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXG--------------------ELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 9999999999999999998887652 26788999999999999988776554443
No 75
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.36 E-value=0.0001 Score=67.45 Aligned_cols=127 Identities=8% Similarity=-0.081 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++.++|++..+|+....+....+ .+++++.++..++..+|++..+|.....++...+.
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-------- 126 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-------- 126 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--------
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--------
Confidence 4578899999999999999999999999888875 78999999999999999999999999888887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYR 251 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR 251 (423)
+.+.+.++.++++.+|.+..+.......... ..+.+.+..+.+.+..++.+...|...
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ 184 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK---LDEKQAKEVLKQHFEKSDKEQWGWNIV 184 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHSCCCSTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 6788888888999998887555444333221 346777888888888888887766533
No 76
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.31 E-value=8.6e-06 Score=70.83 Aligned_cols=126 Identities=6% Similarity=-0.059 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHH-HHHhhhccChhHHh
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWV-INMISRNCSTLQWI 190 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwl-l~~l~~~~~~~~~~ 190 (423)
.++++.....++..+|++..+|.....+....+ .+.+++..+..++..+|.++.+|.....+ ....+.
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~-------- 94 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ-------- 94 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC--------
Confidence 456778889999999999999999999998875 79999999999999999999999999888 444443
Q ss_pred H--HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHH
Q 014516 191 I--ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY 250 (423)
Q Consensus 191 ~--~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~y 250 (423)
+ .+.+..+.++++.+|.+..+|...+.+....+. +.+.+..+.+.+..+|.|...+..
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCccHHHH
Confidence 3 788899999999999999999999888877765 889999999999999998765433
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.31 E-value=2.5e-05 Score=80.53 Aligned_cols=164 Identities=8% Similarity=-0.039 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHc-------cCCcCCHH-------HHHHHHHHHHH-hCCCchhHhHHHHHHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KRLLPILM-------DELHLSALVLS-YSPKSEQAWSHRRWVI 177 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~-------~~~~~~~~-------~EL~~~~~lL~-~nPK~y~~W~hRrwll 177 (423)
.+++..++.+|..+|.+..+|.....++.. .+ +++ +.+..+..++. .+|++..+|....-+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g---~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG---DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc---chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 477889999999999999999999998875 33 444 78999999997 8999999999998888
Q ss_pred HHhhhccChhHHhHHHHHHHHHHHHHhcCCCc-hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516 178 NMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLML 256 (423)
Q Consensus 178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~ 256 (423)
...+. +++...+.+++++.+|.+. .+|.....+..+.+. +++..+.+.+.+...|.+.+.|.....+..
T Consensus 332 ~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 332 ESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHTTC--------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HhcCC--------HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 77665 6888999999999999986 589888777666543 778899999999999887777654444322
Q ss_pred HhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 257 RNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
...+ -.++.......++..+|++..+|.....+
T Consensus 402 ~~~~-------------------~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 402 YCSK-------------------DKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHTC-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcC-------------------ChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1111 24677888889999999999999765443
No 78
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.30 E-value=4.4e-05 Score=73.21 Aligned_cols=159 Identities=6% Similarity=-0.156 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..+++++.+.. |++..++..+..++...+ ..++++..+..++..+|++..+-....|+-..... .-
T Consensus 116 ~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~------~~ 181 (291)
T 3mkr_A 116 NPDAALRTLHQ-----GDSLECMAMTVQILLKLD---RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG------EK 181 (291)
T ss_dssp CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT------TH
T ss_pred CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc------hH
Confidence 35677776665 999999999999999886 78999999999999999986443333443322211 13
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+++.+.+..++++.+|.+-.+|+.+..+...++. +++..+.+.+.+..+|.|..+|.++..+...+..
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~---------- 249 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK---------- 249 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------
Confidence 7899999999999999999999999999988876 8999999999999999999999999988776421
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
..+...++..+++..+|+|..+-.+
T Consensus 250 ---------~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 250 ---------PPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp ---------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 1123457889999999999876554
No 79
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=2e-06 Score=84.37 Aligned_cols=133 Identities=8% Similarity=-0.126 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---------------hhHhHHHHHHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---------------EQAWSHRRWVI 177 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---------------y~~W~hRrwll 177 (423)
.+++.....++..+|++..+|+.++.++...+ .+.+++..+..++..+|.+ ..+|..+..++
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEG---KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777889999999999999998875 7999999999999999999 58999999998
Q ss_pred HHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
..++. +.+.+..+.++++.+|.|..+|..++.++..++. +++.+..+.+.+..+|.|..+|..+..+...
T Consensus 207 ~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 207 LKLQA--------FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHcCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 88776 7899999999999999999999999999988765 8999999999999999999999998887776
Q ss_pred h
Q 014516 258 N 258 (423)
Q Consensus 258 l 258 (423)
+
T Consensus 277 ~ 277 (336)
T 1p5q_A 277 I 277 (336)
T ss_dssp H
T ss_pred H
Confidence 5
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.29 E-value=0.00021 Score=66.06 Aligned_cols=157 Identities=9% Similarity=-0.026 Sum_probs=122.4
Q ss_pred HHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHH
Q 014516 123 LLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVE 199 (423)
Q Consensus 123 Ll~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~ 199 (423)
..++|....++..++..+...+ .+++++..+..++..+|.+ ..+|..+..+....+. +.+.+..+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~ 76 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQG---KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------YLLAASEYE 76 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT---CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------HHHHHHHHH
Confidence 3568899999999999888875 7999999999999999999 8899999999888766 789999999
Q ss_pred HHHHhcCCC---chhchHHHHHHHhcC------hhhHHHHHHHHHHHHhccCCChhHHHHH-----------------HH
Q 014516 200 KIAERSKMN---YRAWNHRCWLVSFMT------REQVLDELKKSRNWSGLHVADNSCFHYR-----------------RR 253 (423)
Q Consensus 200 ~~l~~~pkN---Y~AW~hR~wll~~~~------~~~~~~EL~~~~k~i~~d~~N~SaW~yR-----------------~~ 253 (423)
++++.+|.+ ..++...+.+..... ...+.+.+..+.+.+..+|.+..++..+ ..
T Consensus 77 ~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 77 RFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp HHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865 457777887776610 2348899999999999999998887444 22
Q ss_pred HHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHH
Q 014516 254 LMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA---LWLHRRFLSM 310 (423)
Q Consensus 254 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS---aW~yrr~Ll~ 310 (423)
+.... .-+++.+....+++..+|++.. +|..+..+..
T Consensus 157 ~~~~~--------------------g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 157 LYERR--------------------ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHT--------------------TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHc--------------------cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 22221 2378899999999999998653 6666554443
No 81
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=1.8e-06 Score=88.56 Aligned_cols=132 Identities=7% Similarity=-0.072 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---------------hhHhHHHHHHHH
Q 014516 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---------------EQAWSHRRWVIN 178 (423)
Q Consensus 114 ~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---------------y~~W~hRrwll~ 178 (423)
++++....++..+|++..+|+.++.++...+ .+.+++..+..++..+|.+ ..+|..+..++.
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGG---KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777889999999999999998875 8999999999999999999 689999999998
Q ss_pred HhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
++.. +.+.+..+.++++.+|.|..+|..|+.++..++. +++.+..+.+.+.++|.|..+|..+..+...+
T Consensus 329 ~~g~--------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 329 KLRE--------YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred HhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8876 7899999999999999999999999999988765 89999999999999999999999999887765
No 82
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=2e-05 Score=63.28 Aligned_cols=121 Identities=7% Similarity=0.018 Sum_probs=104.0
Q ss_pred hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516 125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (423)
Q Consensus 125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (423)
.+|....+|.....+....+ .+.+++.++..++..+|++..+|..+..+....+. +.+.+.++.++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVE---NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------YAGAVQDCERAICI 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHhc
Confidence 35567778888888777765 78999999999999999999999999988877665 68889999999999
Q ss_pred cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 205 SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
+|.+..+|...+.+....+. +.+.+..+.+.+..+|.+..+|.....+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 76 DPAYSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 99999999999988877765 78899999999999999999998888776654
No 83
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1.4e-05 Score=64.77 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=102.0
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
.|.+..+|..+..+....+ .+++++..+..++..+|++..+|..+..++...+. +++.+.++.++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKG---DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--------FQLALKDCEECIQLE 80 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--------HHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC
Confidence 5778889999998887765 78999999999999999999999988888766554 688899999999999
Q ss_pred CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
|.+..+|.....+...++. +++.+..+.+.+..+|.+..+|.....+...
T Consensus 81 ~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999988877765 7889999999999999998888887766554
No 84
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=8.8e-06 Score=68.81 Aligned_cols=125 Identities=6% Similarity=-0.145 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS 234 (423)
Q Consensus 155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (423)
.+..++..+|++..+|.....++...+. +.+.+..+.+++..+|.|..+|...+.+....+. +++.+..+
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~ 75 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGK--------WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--YEQALQSY 75 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence 3456677899999999988888777655 7899999999999999999999999999988765 89999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
++.+..+|.|..+|.++..++..+. -+++.+.+..+++..+|++...+..+..+.
T Consensus 76 ~~al~~~p~~~~~~~~lg~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 76 SYGALMDINEPRFPFHAAECHLQLG--------------------DLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 9999999999999999998887752 267888999999999999988776655443
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.26 E-value=3.9e-05 Score=65.33 Aligned_cols=147 Identities=7% Similarity=-0.075 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc
Q 014516 130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY 209 (423)
Q Consensus 130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY 209 (423)
..+|..+..+....+ .+++.+..+..++..+|++..+|.....+....+. +++.+.++.++++.+|.+.
T Consensus 8 ~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAG---RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHT---CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCH
Confidence 456666777776664 78999999999999999999999998888877655 6889999999999999999
Q ss_pred hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHH
Q 014516 210 RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNE 289 (423)
Q Consensus 210 ~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~ 289 (423)
.+|.....+....+. +.+.++.+.+.+..+|.+..+|.....+..... -+++.+++..
T Consensus 77 ~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------------------~~~~A~~~~~ 134 (186)
T 3as5_A 77 KVATVLGLTYVQVQK--YDLAVPLLIKVAEANPINFNVRFRLGVALDNLG--------------------RFDEAIDSFK 134 (186)
T ss_dssp HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC--------------------cHHHHHHHHH
Confidence 999999888877654 788999999999999999999988887766531 2678888999
Q ss_pred HHHhhcCCCccHHHHHHHHH
Q 014516 290 SLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 290 ~~I~~~p~neSaW~yrr~Ll 309 (423)
+++..+|.+..+|.....+.
T Consensus 135 ~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHH
Confidence 99999999987777655444
No 86
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.7e-05 Score=65.01 Aligned_cols=116 Identities=5% Similarity=-0.067 Sum_probs=98.0
Q ss_pred CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516 164 PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA 243 (423)
Q Consensus 164 PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~ 243 (423)
|.....|..+...+...+. +.+.+..+.++++.+|.+..+|..++.+...++. +.+.+..+.+.+..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAIEKDPN 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCC
Confidence 3455677777776666554 7899999999999999999999999999988765 89999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc------CCCccHHHHHHHHH
Q 014516 244 DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY------VGREALWLHRRFLS 309 (423)
Q Consensus 244 N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~------p~neSaW~yrr~Ll 309 (423)
+..+|..+..+...+. -+++.+++..+++..+ |.|..++.....+.
T Consensus 71 ~~~~~~~lg~~~~~~~--------------------~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 FVRAYIRKATAQIAVK--------------------EYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp CHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh--------------------CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999998887752 2678899999999999 99988888766554
No 87
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=1.4e-05 Score=68.87 Aligned_cols=98 Identities=14% Similarity=-0.019 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..++.++|++..+|+.+..++...+ .+++++..+..++..+|++..+|..+..++..++.
T Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------- 94 (164)
T 3sz7_A 26 EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG---QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD-------- 94 (164)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------
Confidence 3588999999999999999999999999999886 79999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLV 219 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll 219 (423)
+.+.+..+.++++.+|.|..+|..+....
T Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 95 YKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 78999999999999999999998776553
No 88
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=3e-05 Score=63.87 Aligned_cols=120 Identities=8% Similarity=-0.068 Sum_probs=100.6
Q ss_pred HhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516 124 LLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE 203 (423)
Q Consensus 124 l~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (423)
..+|....+|...+.+....+ .+++++..+..++..+|+++.+|..+..++..++. +...+..+.++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~ 71 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALE 71 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHH
Confidence 357888999999999888875 79999999999999999999999999999888765 6889999999999
Q ss_pred hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC-----ChhHHHHHHHHHH
Q 014516 204 RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA-----DNSCFHYRRRLML 256 (423)
Q Consensus 204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~-----N~SaW~yR~~Ll~ 256 (423)
.+|.+..+|...+.+...++. +.+.+..+.+.+..+|. +...+.....+..
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765 78889999999999887 5555555544433
No 89
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=6.8e-06 Score=72.85 Aligned_cols=114 Identities=8% Similarity=-0.034 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC-------chh-----HhHHHHHHHHHhhhccChhHHhHHHHHH
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK-------SEQ-----AWSHRRWVINMISRNCSTLQWIIERESE 196 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK-------~y~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~ 196 (423)
....|..++..+...+ ++++++..++.+|..+|. +.. +|+.|.-++..++. +++.+.
T Consensus 10 ~a~~~~~~G~~l~~~g---~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~ 78 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAG---EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHH
T ss_pred HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHH
Confidence 3456777788777775 899999999999999999 443 99999999999987 788889
Q ss_pred HHHHHHHh-------cCCCchhc----hHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516 197 LVEKIAER-------SKMNYRAW----NHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255 (423)
Q Consensus 197 ~~~~~l~~-------~pkNY~AW----~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll 255 (423)
.++++++. +|.+..+| +.|+.++..++. +++.+..+++.++++|.|-....-+.-+.
T Consensus 79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999 99999999 999999999877 89999999999999888766555444443
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.19 E-value=0.00036 Score=63.44 Aligned_cols=167 Identities=5% Similarity=-0.152 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh---HhHHHHHHHHHhhhcc
Q 014516 111 LAIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ---AWSHRRWVINMISRNC 184 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~---TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~---~W~hRrwll~~l~~~~ 184 (423)
..++++.....++..+|++. .++..++.+....+ .+++++..++.++..+|++.. +|..+..+...+....
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 35889999999999999864 68999999998876 799999999999999999986 7888887776532100
Q ss_pred --------C--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHh---------------cChhhHHHHHHHHHHHHh
Q 014516 185 --------S--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF---------------MTREQVLDELKKSRNWSG 239 (423)
Q Consensus 185 --------~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~---------------~~~~~~~~EL~~~~k~i~ 239 (423)
. .-...+++.+....++++.+|.+-.+|.-+..+... +....+...+...++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 0 001237889999999999999999998644322111 111347888999999999
Q ss_pred ccCCCh---hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 240 LHVADN---SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 240 ~d~~N~---SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
.+|.+- .++..+..+..++. .+++.+++...++...|.+..
T Consensus 176 ~~p~~~~~~~a~~~l~~~~~~~g--------------------~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 176 DYPDTQATRDALPLMENAYRQMQ--------------------MNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHCCSCCCC
T ss_pred HCcCCCccHHHHHHHHHHHHHcC--------------------CcHHHHHHHHHHHhhCCCchh
Confidence 999886 46777776666642 256777888888888887654
No 91
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=8e-05 Score=58.59 Aligned_cols=113 Identities=8% Similarity=0.018 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
...+|.....+....+ .+++.+.++..++..+|.+..+|.....+....+. +...+..+.++++.+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVG---NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------YQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhCccc
Confidence 3456777777776664 78999999999999999999999988888877655 678889999999999999
Q ss_pred chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 209 YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 209 Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
..+|.....+....+. +.+.+..+.+.+..+|.+..+|.....+
T Consensus 72 ~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 72 GKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9999998888877765 7888899999999999998888776654
No 92
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=1.3e-05 Score=62.85 Aligned_cols=108 Identities=7% Similarity=0.128 Sum_probs=95.2
Q ss_pred hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516 125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (423)
Q Consensus 125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (423)
++|++..+|..+..+....+ .+.+++..+..++..+|++..+|..+..++...+. +++.+.++.++++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAG---NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--------YEEAVDCYNYVINV 69 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHh
Confidence 47889999999999888775 78999999999999999999999999888877765 78899999999999
Q ss_pred cCC--CchhchHHHHHHHhc-ChhhHHHHHHHHHHHHhccCCCh
Q 014516 205 SKM--NYRAWNHRCWLVSFM-TREQVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 205 ~pk--NY~AW~hR~wll~~~-~~~~~~~EL~~~~k~i~~d~~N~ 245 (423)
+|. +..+|.....+...+ +. +++.++++.+.+..+|.+.
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGK--EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSC--SHHHHHHHHHHGGGCCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhcccCCC
Confidence 999 999999999888777 65 7889999999999998764
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.15 E-value=2.8e-05 Score=67.50 Aligned_cols=133 Identities=5% Similarity=-0.072 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHH-HHhcChhh
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWL-VSFMTREQ 226 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wl-l~~~~~~~ 226 (423)
.+++++..+..++..+|.+..+|.....+....+. +.+.+....++++.+|.+..+|.....+ ....+...
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 56678889999999999999999999998887765 7899999999999999999999999888 54544411
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr 306 (423)
..+.+..+.+.+..+|.+..+|..+..+..... -+++.+.+..+++..+|.+...+....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQA--------------------NYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 288899999999999999999998887776641 267889999999999999988775544
Q ss_pred HH
Q 014516 307 FL 308 (423)
Q Consensus 307 ~L 308 (423)
.+
T Consensus 157 ~i 158 (177)
T 2e2e_A 157 SI 158 (177)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.13 E-value=0.00021 Score=57.00 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR 210 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~ 210 (423)
.+|+....+....+ .+++.+.++..++..+|.+..+|.....+....+. +++.+.++.+++..+|.+..
T Consensus 2 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHcC---cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHCCCchH
Confidence 35666666666554 67888888888888888888888877766665543 67778888888888888888
Q ss_pred hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHH
Q 014516 211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNES 290 (423)
Q Consensus 211 AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~ 290 (423)
+|.....+....+. +.+.+..+.+.+..+|.+..+|.....+..... -+++.+.+...
T Consensus 71 ~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------------------~~~~A~~~~~~ 128 (136)
T 2fo7_A 71 AWYNLGNAYYKQGD--YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------------------DYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc--------------------cHHHHHHHHHH
Confidence 88777777665543 778888888888888888888877666554421 25667777777
Q ss_pred HHhhcCC
Q 014516 291 LIKQYVG 297 (423)
Q Consensus 291 ~I~~~p~ 297 (423)
++..+|.
T Consensus 129 ~~~~~~~ 135 (136)
T 2fo7_A 129 ALELDPR 135 (136)
T ss_dssp HHHHSTT
T ss_pred HHccCCC
Confidence 7777775
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.13 E-value=3.9e-05 Score=79.97 Aligned_cols=127 Identities=7% Similarity=-0.119 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.+++++.+..++.++|++..+|+....++...+ .+++++..+..++..+|++..+|.....++...+. +
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~ 107 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ---RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--------A 107 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------H
Confidence 588999999999999999999999999998876 79999999999999999999999999999888766 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhc---ChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFM---TREQVLDELKKSRNWSGLHVADNSCFHYR 251 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~---~~~~~~~EL~~~~k~i~~d~~N~SaW~yR 251 (423)
++.+..+.++++.+|.+..+|.....+...+ +. .++.++.+.+.+..+|.+.++|...
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHhcCCcccChHHHh
Confidence 8899999999999999999999999998887 54 7889999999999999999888543
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.12 E-value=8e-05 Score=70.97 Aligned_cols=153 Identities=7% Similarity=-0.098 Sum_probs=121.8
Q ss_pred hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516 125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (423)
Q Consensus 125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (423)
.-|++..++......+...+ ++.+++..+..+|..+|++..+|.....++...+. +++.+..+.+++..
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQES---NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------SEDAEAVLXTIPLQ 180 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------HHHHHHHHTTSCGG
T ss_pred HcCCchhhHHHHHHHHHhCC---CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------HHHHHHHHHhCchh
Confidence 34899999988888877765 78999999999999999999999999888887765 68899999999999
Q ss_pred cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHH
Q 014516 205 SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEE 284 (423)
Q Consensus 205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eE 284 (423)
+|.+...+......+.... ....++....+.+..+|.|..++..+..++.... -+++.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~--~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g--------------------~~~~A 238 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQA--ADTPEIQQLQQQVAENPEDAALATQLALQLHQVG--------------------RNEEA 238 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHH
T ss_pred hcchHHHHHHHHHHHHhhc--ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc--------------------cHHHH
Confidence 9966655555444343322 2455788889999999999999999988877642 26788
Q ss_pred HHHHHHHHhhcCCC--ccHHHHHHHHHH
Q 014516 285 LDWNESLIKQYVGR--EALWLHRRFLSM 310 (423)
Q Consensus 285 L~~~~~~I~~~p~n--eSaW~yrr~Ll~ 310 (423)
++...+++..+|++ ..+|..+..++.
T Consensus 239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 239 LELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHH
Confidence 89999999999998 777777665553
No 97
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=7.7e-05 Score=61.65 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=102.7
Q ss_pred HhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516 124 LLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (423)
Q Consensus 124 l~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (423)
..+|....+|..+.......+ .+.+++..+..++..+|.+ ..+|..+..++..... +.+.+..+.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~ 90 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCG---DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--------YDKAETEASK 90 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--------HHHHHHHHHH
Confidence 457888999999999888775 7999999999999999998 8889888888877655 7889999999
Q ss_pred HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
+++.+|.+..+|..+..+...++. +++.+..+.+.+..+|.+..+|.....+
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhhCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999999999999998887765 7889999999999999999888765544
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.11 E-value=3.5e-05 Score=67.39 Aligned_cols=135 Identities=7% Similarity=-0.149 Sum_probs=109.8
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..++..+|++..+|.....++...+ ..++++..+..++..+| ++..+.....+.......
T Consensus 21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~------- 89 (176)
T 2r5s_A 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETK---QFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAA------- 89 (176)
T ss_dssp CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcc-------
Confidence 3588999999999999999999999999998876 78999999999999999 776655544332211110
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHh
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD--NSCFHYRRRLMLRN 258 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N--~SaW~yR~~Ll~~l 258 (423)
...++..+.++++.+|.+..+|....-++...+. +++.+..+.+.+..+|.. ..+|.....++..+
T Consensus 90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 1235789999999999999999999999888765 889999999999999876 45888887777664
No 99
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.10 E-value=0.00012 Score=75.52 Aligned_cols=159 Identities=6% Similarity=-0.133 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-hHhHHHHHHHHHhhhccChhHHh
Q 014516 113 IEVMIHSKALLL-LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-QAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 113 ~~~L~~t~~lLl-~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
++++..++.++. ++|++..+|.....+....+ .+++....+..++..+|+++ .+|.....++.+.+.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------- 371 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-------- 371 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--------
Confidence 489999999997 89999999999999988875 78999999999999999986 599988887776654
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHH-hcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVS-FMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN 269 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~-~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~ 269 (423)
++....++.++++..|.+++.|.-..++.- ..+ ..++.....++.++.+|.+...|.....+..+..
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~--~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g---------- 439 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---------- 439 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT----------
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC----------
Confidence 678889999999999998888876666532 233 3688899999999999999999977666554321
Q ss_pred CCCchhchHHHHHHHHHHHHHHHhhcCCCcc----HHHH
Q 014516 270 SSGYFVETYQIWKEELDWNESLIKQYVGREA----LWLH 304 (423)
Q Consensus 270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS----aW~y 304 (423)
-.++......+++...|.+.. +|..
T Consensus 440 ----------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 440 ----------EDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp ----------CHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred ----------CHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 145566777788887665543 8854
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.09 E-value=0.00012 Score=58.52 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|+....+....+ .+++.+..+..++..+|.+..+|.....++...+. +
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~ 85 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------Y 85 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------H
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc---CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC--------H
Confidence 478899999999999999999999888887765 78999999999999999999999888777665544 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
++.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHHHHHccCCCC
Confidence 888999999999999999999888888766654 788899999999888763
No 101
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=1.4e-05 Score=70.74 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHccCCcCCHHHHHHHHHHHHHh-------CCCchhHh-
Q 014516 111 LAIEVMIHSKALLLLSCD-------FAT-----AWNSRKLIVSNKRLLPILMDELHLSALVLSY-------SPKSEQAW- 170 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe-------~~T-----aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~-------nPK~y~~W- 170 (423)
..++++..++++|.++|+ +.. +|+.|..++..++ .+++.+..++.+|.. +|+++.+|
T Consensus 26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg---r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~ 102 (159)
T 2hr2_A 26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALHYFNRRGELNQDEGKLWI 102 (159)
T ss_dssp CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence 468999999999999999 544 9999999999986 899999999999999 99999999
Q ss_pred ---HHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhch
Q 014516 171 ---SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWN 213 (423)
Q Consensus 171 ---~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~ 213 (423)
+.|..++..++. +++.+..+.++++.+|.+-.+..
T Consensus 103 ~~~~~rG~aL~~lgr--------~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 103 SAVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSCCT
T ss_pred HHHHhHHHHHHHCCC--------HHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999987 78999999999999997655543
No 102
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.09 E-value=9.9e-05 Score=62.23 Aligned_cols=115 Identities=8% Similarity=-0.042 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..++..+|++..+|..+..+....+ .+.+++..+..++..+|++..+|.....++..++.
T Consensus 28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-------- 96 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-------- 96 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc--------
Confidence 3578999999999999999999999999988875 78999999999999999999999999988887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN 236 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k 236 (423)
+.+.+..+.++++.+|.+..+|.+...+...+....+++.++...+
T Consensus 97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 6889999999999999999988765555333322234444444443
No 103
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=5.2e-05 Score=65.13 Aligned_cols=117 Identities=10% Similarity=-0.007 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------------------CCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSY------------------SPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------------------nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
...+|..++..+...+ .+.+++..+..++.. +|.+..+|..+..++.+++.
T Consensus 10 ~a~~~~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------- 78 (162)
T 3rkv_A 10 SVEALRQKGNELFVQK---DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-------- 78 (162)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------
Confidence 3456777787777765 789999999999998 88888999999999988876
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh-hHHHHHHHHHHHh
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN-SCFHYRRRLMLRN 258 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~-SaW~yR~~Ll~~l 258 (423)
+...+..+.++++.+|.|..+|..++.++..++. +.+.+..+.+.+.++|.|- ........+...+
T Consensus 79 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 79 LHEAEETSSEVLKREETNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999988876 8999999999999999998 5566666655554
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.06 E-value=0.00025 Score=59.66 Aligned_cols=113 Identities=7% Similarity=-0.003 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
...+|.....+....+ .+.+++..+..++..+|++..+|..+..++...+. +.+.+..+.++++.+|.+
T Consensus 12 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAK---DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccc
Confidence 3456777777777664 79999999999999999999999999998887765 789999999999999999
Q ss_pred chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 209 YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 209 Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
..+|...+.+...++. +.+.+..+.+.+..+|.+..+|.+....
T Consensus 81 ~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 81 IKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999888765 8899999999999999999988665544
No 105
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=4.2e-05 Score=63.32 Aligned_cols=87 Identities=9% Similarity=-0.085 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|..++.++...+ ...+++..+..++..+|.+..+|.....++...+. +
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~--------~ 101 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A 101 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence 588999999999999999999999999999886 78999999999999999999999999999888776 6
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 014516 192 ERESELVEKIAERSKMNY 209 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY 209 (423)
.+.+..+.++++.+|.+.
T Consensus 102 ~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCcCCC
Confidence 889999999999999764
No 106
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.04 E-value=0.00012 Score=69.62 Aligned_cols=160 Identities=9% Similarity=-0.063 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..++..+|++..+|..+..+....+ .+++++..+..++..+|.+..+|+.+..++..++.
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------- 87 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES-------- 87 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence 3588999999999999999999999999998876 78999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
+++.+..+.++++.+|.+..+.....|..-... .........-...+.+.....+...++.+
T Consensus 88 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~l~~~------------- 149 (281)
T 2c2l_A 88 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA-----KKKRWNSIEERRIHQESELHSYLTRLIAA------------- 149 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH-----HHHHHHHHHHTCCCCCCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------------
Confidence 788999999999999987655554444433221 11222222334667777777777665432
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
-++++++..+.++..+|++..+......+
T Consensus 150 ---------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (281)
T 2c2l_A 150 ---------ERERELEECQRNHEGHEDDGHIRAQQACI 178 (281)
T ss_dssp ---------HHHHHHTTTSGGGTTTSCHHHHTHHHHHH
T ss_pred ---------HHHHHHHHHHhhhccccchhhhhhHHHHH
Confidence 24566777777888888877555544333
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.02 E-value=0.00011 Score=70.12 Aligned_cols=136 Identities=4% Similarity=-0.160 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
...++++..+..+|..+|++..++.....++...+ ..++++..+..++..+|.....+......+.....
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~------- 200 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN---RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA------- 200 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT---CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC---CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc-------
Confidence 34688999999999999999999999999998876 78999999999999999666554444444444333
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHh
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD--NSCFHYRRRLMLRN 258 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N--~SaW~yR~~Ll~~l 258 (423)
...++....++++.+|.|..+|....-++...+. +++.++.+.+.+..+|.+ -.+|.....++..+
T Consensus 201 -~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 201 -DTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp -SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred -cCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 3457888999999999999999999998887765 889999999999999998 77888887777664
No 108
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.99 E-value=6.3e-05 Score=62.25 Aligned_cols=101 Identities=10% Similarity=-0.045 Sum_probs=83.3
Q ss_pred HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516 132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA 211 (423)
Q Consensus 132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A 211 (423)
.|..+...+...+ .+.+++..+..++..+|++..+|.....++...+. +.+.+..+.++++.+|.+..+
T Consensus 19 ~~~~~g~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLA---NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLDPKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHH
Confidence 3555666666654 78999999999999999999999999999988766 689999999999999999999
Q ss_pred chHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516 212 WNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 212 W~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~ 245 (423)
|.....++...+. +++.+..+.+++..+|.+.
T Consensus 88 ~~~la~~~~~~g~--~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 88 HAALAVSHTNEHN--ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCC
Confidence 9999988877654 7889999999999999764
No 109
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.99 E-value=0.00031 Score=55.55 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=95.8
Q ss_pred hCCCc-HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516 125 LSCDF-ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE 203 (423)
Q Consensus 125 ~nPe~-~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (423)
++|.. ..+|.....+....+ .+++.+.++..++..+|.+..+|.....++...+. +++.+.++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~ 71 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALE 71 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHH
Confidence 35555 678888887777765 78999999999999999999999888877776654 6788899999999
Q ss_pred hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516 204 RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLML 256 (423)
Q Consensus 204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~ 256 (423)
.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..++..+..+..
T Consensus 72 ~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 72 LDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999888888777654 788899999999999999888877766544
No 110
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.97 E-value=0.00016 Score=57.81 Aligned_cols=102 Identities=9% Similarity=-0.047 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....++...+.
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 95 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG---NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK-------- 95 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---chHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC--------
Confidence 3578999999999999999999999999998875 78999999999999999999999999998887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (423)
+.+.+.++.++++.+|.+..+|.....+...++
T Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 688999999999999999999988777765543
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.96 E-value=4.2e-05 Score=66.89 Aligned_cols=152 Identities=9% Similarity=-0.109 Sum_probs=112.5
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
||.....+..+...+...+ .+.+.+..+..++..+|++..+|.....++...+. +++.+..+.+++..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQG---EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------FELAQELLATIPLEY 70 (176)
T ss_dssp ----CTTHHHHHHHHHHTT---CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------HHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHhhhcc
Confidence 3444444555666666554 78999999999999999999999999999887766 688999999999999
Q ss_pred CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHH
Q 014516 206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEEL 285 (423)
Q Consensus 206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL 285 (423)
| +...+.....+... .......++..+.+.+..+|.|..+|..+..++.... -+++.+
T Consensus 71 p-~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g--------------------~~~~A~ 128 (176)
T 2r5s_A 71 Q-DNSYKSLIAKLELH-QQAAESPELKRLEQELAANPDNFELACELAVQYNQVG--------------------RDEEAL 128 (176)
T ss_dssp C-CHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------------------CHHHHH
T ss_pred C-ChHHHHHHHHHHHH-hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------------------cHHHHH
Confidence 9 66554444433211 1101123588999999999999999999998887642 267888
Q ss_pred HHHHHHHhhcCCC--ccHHHHHHHHHH
Q 014516 286 DWNESLIKQYVGR--EALWLHRRFLSM 310 (423)
Q Consensus 286 ~~~~~~I~~~p~n--eSaW~yrr~Ll~ 310 (423)
....+++..+|++ ..+|.....++.
T Consensus 129 ~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 129 ELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 9999999999986 448877665543
No 112
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=0.00023 Score=58.38 Aligned_cols=119 Identities=9% Similarity=-0.009 Sum_probs=100.2
Q ss_pred hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516 162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH 241 (423)
Q Consensus 162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d 241 (423)
.+|.+..+|.....++...+. +...+.+..++++.+|.+..+|..++.+...++. +.+.+..+.+.+..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRK--------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELD 73 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC
T ss_pred CccccHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhC
Confidence 567888999988888877665 7899999999999999999999999999988765 889999999999999
Q ss_pred CCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC-----CccHHHHHHHHHH
Q 014516 242 VADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG-----REALWLHRRFLSM 310 (423)
Q Consensus 242 ~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~-----neSaW~yrr~Ll~ 310 (423)
|.+..+|..+..+...+. -+++.+.+..+++..+|+ +..+|...+.+..
T Consensus 74 p~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEME--------------------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp TTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999998887652 267888999999999998 7777777665543
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.96 E-value=0.00026 Score=62.70 Aligned_cols=120 Identities=3% Similarity=-0.087 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++..+..++ +| +..+|+.++.+....+ .+++++..+..++..+|++..+|..+..++..++. +
T Consensus 22 ~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--------~ 87 (213)
T 1hh8_A 22 WKGALDAFSAVQ--DP-HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK--------Y 87 (213)
T ss_dssp HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc--------H
Confidence 477888888874 44 7789999999998876 79999999999999999999999999999888766 7
Q ss_pred HHHHHHHHHHHHhcCCCc----------------hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH
Q 014516 192 ERESELVEKIAERSKMNY----------------RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC 247 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY----------------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa 247 (423)
++.+..+.++++.+|.|- .+|..++.+...++. +++.+..+++.+..+|.+..+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~ 157 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSMKSEPRHS 157 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCSGGGG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHHHHHHcCcccccc
Confidence 899999999999988877 899999988887765 889999999999999988664
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.95 E-value=0.00013 Score=71.35 Aligned_cols=103 Identities=10% Similarity=-0.015 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHH
Q 014516 111 LAIEVMIHSKALLLLSCDF---------------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRW 175 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~---------------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrw 175 (423)
..++++..+..+|.++|++ ..+|+.+..++...+ .+++++..+..+|..+|++..+|..+..
T Consensus 162 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~ 238 (336)
T 1p5q_A 162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESCNKALELDSNNEKGLSRRGE 238 (336)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3588999999999999999 699999999999886 8999999999999999999999999999
Q ss_pred HHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516 176 VINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (423)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (423)
++..++. +++.+..+.++++.+|.|..+|.....+...++.
T Consensus 239 ~~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 239 AHLAVND--------FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHTTC--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 9988876 7899999999999999999999999888876644
No 115
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.93 E-value=0.00022 Score=67.78 Aligned_cols=180 Identities=4% Similarity=-0.132 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHccCCcCCHHHHHHH
Q 014516 82 YKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKRLLPILMDELHL 155 (423)
Q Consensus 82 Y~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe------~~TaWn~Rk~lL~~~~~~~~~~~EL~~ 155 (423)
|..|...|.++...|+.. ...++++..+..++.+.+. ...+|+..+.+....+ .+++++..
T Consensus 33 ~~~A~~~~~~a~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~ 99 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLR----------KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHHHHHHHT----------TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 666666666665555432 2358899999999988532 3678999999998876 78999999
Q ss_pred HHHHHHhCCCc------hhHhHHHHHHHHHh-hhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhc
Q 014516 156 SALVLSYSPKS------EQAWSHRRWVINMI-SRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFM 222 (423)
Q Consensus 156 ~~~lL~~nPK~------y~~W~hRrwll~~l-~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~ 222 (423)
+..++...|+. ..+|+....++... +. +++.+.++.++++.+|.+ ..++...+.+...+
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHD--------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 99999987764 45777777777763 54 688999999999999865 34566677777666
Q ss_pred ChhhHHHHHHHHHHHHhccCCChhH-------HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc
Q 014516 223 TREQVLDELKKSRNWSGLHVADNSC-------FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY 295 (423)
Q Consensus 223 ~~~~~~~EL~~~~k~i~~d~~N~Sa-------W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~ 295 (423)
+. +.+.+..+++.+..+|.+... |..+..+...+ .-+.+.+.+..+++..+
T Consensus 172 g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 172 GQ--YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA--------------------TDAVAAARTLQEGQSED 229 (292)
T ss_dssp TC--HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHGGGCC-
T ss_pred CC--HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhC
Confidence 54 889999999999999887642 33333333332 12678889999999999
Q ss_pred CCCccHHHH
Q 014516 296 VGREALWLH 304 (423)
Q Consensus 296 p~neSaW~y 304 (423)
|++......
T Consensus 230 p~~~~~~~~ 238 (292)
T 1qqe_A 230 PNFADSRES 238 (292)
T ss_dssp --------H
T ss_pred CCCCCcHHH
Confidence 998876654
No 116
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=4.7e-05 Score=67.35 Aligned_cols=100 Identities=6% Similarity=-0.058 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCC-------cCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRL-------LPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC 184 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~-------~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~ 184 (423)
.+++++.+..++.+||++..+|+..+.++...+. ...+++++..+..+|.++|++..+|+...-++..++...
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 4778889999999999999999999998887630 012579999999999999999999999999998775321
Q ss_pred Ch---hHHhHHHHHHHHHHHHHhcCCCchh
Q 014516 185 ST---LQWIIERESELVEKIAERSKMNYRA 211 (423)
Q Consensus 185 ~~---~~~~~~~EL~~~~~~l~~~pkNY~A 211 (423)
++ ....+++.+.++.++++.+|.|-..
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 10 1124788999999999999987533
No 117
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.91 E-value=0.00014 Score=58.75 Aligned_cols=99 Identities=8% Similarity=0.014 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.....++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....++..++. +
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~ 100 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL---EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD--------Y 100 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh--------H
Confidence 478999999999999999999999999987775 78999999999999999999999999998887765 6
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHh
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSF 221 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~ 221 (423)
++.+..+.++++.+|.+..+|.....+...
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 889999999999999999888877766543
No 118
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=9e-05 Score=75.78 Aligned_cols=158 Identities=10% Similarity=-0.032 Sum_probs=121.2
Q ss_pred HHHhCCCcHHHHHHHHHHHHccC---------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 122 LLLLSCDFATAWNSRKLIVSNKR---------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 122 lLl~nPe~~TaWn~Rk~lL~~~~---------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
+|.++|++ +|..|+....... ....+++++......+..+|+...+|+.+..++.+... +.
T Consensus 216 ~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------~~ 285 (457)
T 1kt0_A 216 ILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------YM 285 (457)
T ss_dssp EEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred EEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------HH
Confidence 45667765 6665554321110 01233445555566677788899999999998887765 78
Q ss_pred HHHHHHHHHHHhcCCC---------------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516 193 RESELVEKIAERSKMN---------------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR 257 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkN---------------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~ 257 (423)
..+..+.++++.+|.+ ..+|..+..+...++. +.+.+..+++.+..+|.|..+|..|..++..
T Consensus 286 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--YTKAVECCDKALGLDSANEKGLYRRGEAQLL 363 (457)
T ss_dssp HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 9999999999999999 5899999999988765 8999999999999999999999999988877
Q ss_pred hhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516 258 NLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY 311 (423)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~ 311 (423)
+. -+++.+.+..+++..+|+|..+|..+..+...
T Consensus 364 ~g--------------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 364 MN--------------------EFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp TT--------------------CHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred cc--------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 52 27889999999999999999999998877654
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.89 E-value=0.0002 Score=68.07 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=95.3
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
|....+|..++..+...+ .+.+++..+..++..+|.++.+|..+..++..++. +.+.+..+.++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p 69 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELDG 69 (281)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSCT
T ss_pred ChhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence 567788889998888775 79999999999999999999999999999888776 7899999999999999
Q ss_pred CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516 207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~ 245 (423)
.|..+|..++.++..++. +++.+..+.+.+..+|.|.
T Consensus 70 ~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 70 QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccch
Confidence 999999999999988765 8899999999999988763
No 120
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=3.7e-05 Score=79.24 Aligned_cols=115 Identities=8% Similarity=-0.045 Sum_probs=95.5
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
...+++++.+.++|.++|++..+|+.+..+....+ .+++++..+..++..+|++..+|+.+..++..++.
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~------- 89 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK------- 89 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-------
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence 45688999999999999999999999999999886 79999999999999999999999999999988876
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHH
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSR 235 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~ 235 (423)
+++.+..+.++++.+|.+..+|.....+...+....+++.++..+
T Consensus 90 -~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 -FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 789999999999999999999998877743332223445555555
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.83 E-value=0.00033 Score=62.08 Aligned_cols=117 Identities=9% Similarity=-0.068 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch----------------hHhHHHHHHHHHhhhccChhHHhHH
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE----------------QAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y----------------~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
...+|..++......+ .+.+++..+..++...|++. .+|..+..++..++. +.
T Consensus 37 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~ 105 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKN---EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YP 105 (198)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------HH
Confidence 4456677777777664 79999999999999999988 888888888877665 78
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
+.+..+.++++.+|.+..+|..++.+...++. +++.+..+.+.+..+|.|..++.....+...+
T Consensus 106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 106 KAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887765 88999999999999999999999888877665
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=0.00031 Score=55.10 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++.....++..+|++..+|..+..+....+ .+++.+..+..++..+|++..+|.....++..++.
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------- 87 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR-------- 87 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------
Confidence 3588999999999999999999999999988875 78999999999999999999999999999887765
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWL 218 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wl 218 (423)
+.+.+..+.++++.+|.+-.+|....-+
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6888999999999999998888665433
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00013 Score=60.82 Aligned_cols=105 Identities=9% Similarity=-0.047 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516 128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (423)
Q Consensus 128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (423)
+...+|.-.+......+ .+++++...+.+|..+|++..+|+.+..++..++. +++.+..+.++++.+|.
T Consensus 6 d~A~a~~~lG~~~~~~~---~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~--------~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQK---DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK--------FAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh--------HHHHHHHHHHHHHhCcc
Confidence 44556677777777664 78999999999999999999999999999888776 78899999999999998
Q ss_pred CchhchHHHHHHHhcCh-----hhHHHHHHHHHHHHhccCC
Q 014516 208 NYRAWNHRCWLVSFMTR-----EQVLDELKKSRNWSGLHVA 243 (423)
Q Consensus 208 NY~AW~hR~wll~~~~~-----~~~~~EL~~~~k~i~~d~~ 243 (423)
+..+|..+.-++.+++. ..+.+.+++..+.+..+|.
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 87655554444333321 2477888888888887764
No 124
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00015 Score=62.08 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHH
Q 014516 112 AIEVMIHSKALLLL------------------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR 173 (423)
Q Consensus 112 ~~~~L~~t~~lLl~------------------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hR 173 (423)
.++++..+..+|.+ +|.+..+|+.+..+...++ .+.+++..++.+|..+|.+..+|..+
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 46777777777777 8899999999999999886 79999999999999999999999999
Q ss_pred HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc-hhchHHHHHH
Q 014516 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLV 219 (423)
Q Consensus 174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll 219 (423)
..++..++. +.+.+..+.++++.+|.|- .++....-+.
T Consensus 104 g~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 104 AKARIAAWK--------LDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhc--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999998876 7899999999999999987 4454444443
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.78 E-value=0.002 Score=58.43 Aligned_cols=166 Identities=7% Similarity=-0.033 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
..++..+...+...+ .+++++..+..++..+|.+. .+|..+..+....+. +.+.+....++++.+|
T Consensus 4 ~~~~~~~a~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~~l~~~P 72 (225)
T 2yhc_A 4 PNEIYATAQQKLQDG---NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------LPLAQAAIDRFIRLNP 72 (225)
T ss_dssp HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHCc
Confidence 456666777666654 79999999999999999885 688888888877765 7899999999999999
Q ss_pred CCch---hchHHHHHHHhcC----------------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 207 MNYR---AWNHRCWLVSFMT----------------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 207 kNY~---AW~hR~wll~~~~----------------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
++.. ||..++.+...++ ....++.+..+.+.+..+|.+..++.-+..+............
T Consensus 73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~- 151 (225)
T 2yhc_A 73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY- 151 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH-
Confidence 9986 7888887765421 1357889999999999999999888655432211000000000
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcCCCc---cHHHHHHHHH
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYVGRE---ALWLHRRFLS 309 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne---SaW~yrr~Ll 309 (423)
..|.......-+.+.+...+++|..+|++. .+|..+..+.
T Consensus 152 --~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 152 --SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp --HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 000000112346788999999999999986 3455544433
No 126
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=2.7e-05 Score=76.37 Aligned_cols=143 Identities=8% Similarity=0.006 Sum_probs=86.7
Q ss_pred hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-----------------hHhHHHHHHHHHhhhccChh
Q 014516 125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-----------------QAWSHRRWVINMISRNCSTL 187 (423)
Q Consensus 125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-----------------~~W~hRrwll~~l~~~~~~~ 187 (423)
..++...+|+.++..+...+ .+.+++..+..++..+|.+. .+|+.+..++.++..
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~----- 245 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEE---KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR----- 245 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSS---CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 34556677888888777664 78999999999999999887 388888887776665
Q ss_pred HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
+.+.+..+.++++.+|.|..+|..+..++..++. +++.+..+.+.+..+|.|..++.....+......
T Consensus 246 ---~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~------- 313 (338)
T 2if4_A 246 ---YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA------- 313 (338)
T ss_dssp ---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC----------------------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-------
Confidence 6889999999999999999999999999887765 8999999999999999999998887766443211
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYVGRE 299 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne 299 (423)
..+.+-....+++..+|.|.
T Consensus 314 ------------~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 314 ------------LYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------------------------
T ss_pred ------------HHHHHHHHHHHhhCCCCCCC
Confidence 23344455566677677654
No 127
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=0.00037 Score=61.51 Aligned_cols=105 Identities=7% Similarity=-0.120 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh-
Q 014516 148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR- 224 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~- 224 (423)
.+++.+.....++..+|++..+|....-++..+..... .....+++.+..++++++.+|++-.||+..+-++..++.
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 47888999999999999999999999999988765322 122457899999999999999999999999999876641
Q ss_pred --------hhHHHHHHHHHHHHhccCCChhHHHHHH
Q 014516 225 --------EQVLDELKKSRNWSGLHVADNSCFHYRR 252 (423)
Q Consensus 225 --------~~~~~EL~~~~k~i~~d~~N~SaW~yR~ 252 (423)
..+++.++++.+.++++|.|-..|....
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3588999999999999999876655544
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.76 E-value=0.00055 Score=60.55 Aligned_cols=133 Identities=9% Similarity=0.014 Sum_probs=110.0
Q ss_pred HHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516 133 WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (423)
Q Consensus 133 Wn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (423)
+..++.+....+ .+++++..+..++ +| ++.+|..+..+....+. +.+.+..+.++++.+|.+..+|
T Consensus 9 ~~~~g~~~~~~~---~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~ 74 (213)
T 1hh8_A 9 LWNEGVLAADKK---DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccchHHH
Confidence 445566665554 7899999998885 34 78899999998887765 7899999999999999999999
Q ss_pred hHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh----------------hHHHHHHHHHHHhhhcccccCCCCCCCchhc
Q 014516 213 NHRCWLVSFMTREQVLDELKKSRNWSGLHVADN----------------SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVE 276 (423)
Q Consensus 213 ~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~----------------SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~ 276 (423)
..++.+...++. +.+.+..+.+.+..+|.|. .+|..+..+...+.
T Consensus 75 ~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------- 135 (213)
T 1hh8_A 75 FQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE----------------- 135 (213)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-----------------
Confidence 999999888765 8899999999999998887 88888888776642
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCccH
Q 014516 277 TYQIWKEELDWNESLIKQYVGREAL 301 (423)
Q Consensus 277 ~~~~~~eEL~~~~~~I~~~p~neSa 301 (423)
-+++.+++..+++..+|++...
T Consensus 136 ---~~~~A~~~~~~al~~~p~~~~~ 157 (213)
T 1hh8_A 136 ---EWKKAEEQLALATSMKSEPRHS 157 (213)
T ss_dssp ---CHHHHHHHHHHHHTTCCSGGGG
T ss_pred ---CHHHHHHHHHHHHHcCcccccc
Confidence 2678899999999999988654
No 129
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=0.00016 Score=70.84 Aligned_cols=122 Identities=8% Similarity=-0.063 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHH
Q 014516 111 LAIEVMIHSKALLLLSCDFA-----------------TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR 173 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~-----------------TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hR 173 (423)
..++++..+..+|.++|++. .+|+.+..++...+ .+.+++..+..+|..+|++..+|..+
T Consensus 194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l 270 (338)
T 2if4_A 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK---RYDEAIGHCNIVLTEEEKNPKALFRR 270 (338)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45889999999999999988 49999999998876 78999999999999999999999999
Q ss_pred HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
..++..++. +++.+..+.++++.+|.|-.++.....+...... ..+.+...+.+++..+|.+
T Consensus 271 g~a~~~~g~--------~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 271 GKAKAELGQ--------MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-LYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHHHTTTC--------HHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCC
Confidence 999888766 7899999999999999999999887766443322 3455667777788777765
No 130
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00058 Score=56.20 Aligned_cols=117 Identities=4% Similarity=-0.170 Sum_probs=97.4
Q ss_pred hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC---chhchHHHHHHHhcChhhHHHHHHHHHHHH
Q 014516 162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVSFMTREQVLDELKKSRNWS 238 (423)
Q Consensus 162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i 238 (423)
.+|++...|..+.......+. +.+.+.+..++++.+|.+ ..+|..+..+....+. +.+.+..+.+.+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~ 92 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGD--------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--YDKAETEASKAI 92 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHH
Confidence 567888888888777665544 789999999999999998 8899998888877654 889999999999
Q ss_pred hccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516 239 GLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL 308 (423)
Q Consensus 239 ~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L 308 (423)
..+|.+..+|..+..++..+. -+++.+.+..+++..+|++..+|.....+
T Consensus 93 ~~~~~~~~~~~~~a~~~~~~~--------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 93 EKDGGDVKALYRRSQALEKLG--------------------RLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHTSCCHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hhCccCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999999998888777642 26788899999999999999988765443
No 131
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.75 E-value=0.00021 Score=55.72 Aligned_cols=107 Identities=6% Similarity=-0.078 Sum_probs=90.5
Q ss_pred CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516 163 SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV 242 (423)
Q Consensus 163 nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~ 242 (423)
+|.+..+|.....+....+. +.+.+....++++.+|.+..+|...+.+....+. +++.+..+++.+..+|
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGN--------YTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVIE 71 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSC
T ss_pred CCCcHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCc
Confidence 68899999988888766554 7889999999999999999999999998877765 8899999999999999
Q ss_pred C--ChhHHHHHHHHHHHh-hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516 243 A--DNSCFHYRRRLMLRN-LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGRE 299 (423)
Q Consensus 243 ~--N~SaW~yR~~Ll~~l-~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne 299 (423)
. +..+|..+..+...+ . .+++.+++....+..+|++.
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~--------------------~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEG--------------------KEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSS--------------------CSHHHHHHHHHHGGGCCCCC
T ss_pred ccchHHHHHHHHHHHHHHhC--------------------CHHHHHHHHHHHhhcccCCC
Confidence 9 999988887766543 2 25678899999999999864
No 132
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.69 E-value=0.00095 Score=53.23 Aligned_cols=118 Identities=12% Similarity=-0.066 Sum_probs=96.3
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
|+...+|.....+....+ .+.+++..+..++..+|.+..+|.....++...+. +.+.+.++.++++.+|
T Consensus 1 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKK---DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------YNKCRELCEKAIEVGR 69 (131)
T ss_dssp CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhcc
Confidence 345567777887777765 78999999999999999999999999988877665 7889999999999999
Q ss_pred CC-------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 207 MN-------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 207 kN-------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
.+ ..+|...+.+....+. +.+.+..+.+.+..+| |...+.....+...+
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 88 7888888888777654 7889999999999988 666666666555443
No 133
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.65 E-value=0.00013 Score=59.27 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 113 IEVMIHSKALLLL---SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 113 ~~~L~~t~~lLl~---nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
++++..+..+|.+ +|++..+|...+.++...+ .+++++..+..++..+|++..+|.....++..++.
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------- 76 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR------- 76 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-------
Confidence 5677888999999 6999999999999998876 79999999999999999999999999999988876
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHH
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLV 219 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll 219 (423)
+.+.+..+.++++.+|.+-.+..|..-+.
T Consensus 77 -~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 77 -YEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp -HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 68999999999999999987777665443
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.62 E-value=0.0013 Score=51.84 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=86.3
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..+++++....++..+|++..+|+....+....+ .+++.+.++..++..+|.+..+|.....++...+.
T Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------- 92 (125)
T 1na0_A 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-------- 92 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------
Confidence 3578999999999999999999999999888875 78999999999999999999999988888877655
Q ss_pred HHHHHHHHHHHHHhcCCCchhchHHHHHHH
Q 014516 191 IERESELVEKIAERSKMNYRAWNHRCWLVS 220 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~ 220 (423)
+++.+..+.++++.+|.+-.++.....+..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 93 YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 688899999999999999888877665543
No 135
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.61 E-value=0.0018 Score=52.29 Aligned_cols=98 Identities=9% Similarity=-0.160 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhcc
Q 014516 111 LAIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNC 184 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~---TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~ 184 (423)
..++++.....++..+|++. .+|...+.+....+ .+++++..+..++..+|++ ..++.....++..++.
T Consensus 17 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~-- 91 (129)
T 2xev_A 17 KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR---NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK-- 91 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC--
Confidence 35889999999999999998 79999999988875 7999999999999999999 8889999988887765
Q ss_pred ChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHH
Q 014516 185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219 (423)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll 219 (423)
+++.+..+.++++.+|.+..++.-+..+-
T Consensus 92 ------~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 92 ------NTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp ------HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 68899999999999999988877666554
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.58 E-value=0.00028 Score=58.64 Aligned_cols=93 Identities=5% Similarity=0.019 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~ 190 (423)
..++++..+..+|.++|++.++|+.|+.+....+ .+++++..+..++..+|++...|..+..++..++..... ...
T Consensus 23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~~~ 98 (127)
T 4gcn_A 23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-QND 98 (127)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-cCC
Confidence 3588999999999999999999999999999886 899999999999999998877665555444444321000 112
Q ss_pred HHHHHHHHHHHHHhcCC
Q 014516 191 IERESELVEKIAERSKM 207 (423)
Q Consensus 191 ~~~EL~~~~~~l~~~pk 207 (423)
+...+....++++.+|.
T Consensus 99 ~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 99 LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhCcC
Confidence 78889999999998874
No 137
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.56 E-value=0.00059 Score=67.89 Aligned_cols=117 Identities=9% Similarity=-0.077 Sum_probs=102.7
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH----------------hCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLS----------------YSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~----------------~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
...+|+.+...+...+ .+++++..+..+|. .+|.+..+|..+..++.++.. ++
T Consensus 222 ~a~~~~~~g~~~~~~g---~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~ 290 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQ---NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------WQ 290 (370)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------HH
Confidence 3456777787777765 78999999999998 788889999999999988776 78
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
+.+..+.++++.+|.+..+|..++.++..++. +++.+..+.+.++++|.|..++.....+...+
T Consensus 291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765 89999999999999999999998888777664
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.55 E-value=3e-05 Score=79.95 Aligned_cols=98 Identities=7% Similarity=0.013 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516 147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (423)
..+++++..+..++..+|++..+|..+..++..++. +++.+..+.++++.+|.+..+|..++.+...++.
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-- 89 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYIKGYYRRAASNMALGK-- 89 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence 479999999999999999999999999999988776 7899999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 227 VLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
+++.++.+++.++.+|.+..+|.....+
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8899999999999999999999988776
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.52 E-value=0.0012 Score=58.47 Aligned_cols=101 Identities=13% Similarity=-0.012 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH
Q 014516 111 LAIEVMIHSKALLLLSCDFA----------------TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR 174 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~----------------TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr 174 (423)
..++++..+..++.++|++. .+|..+..+....+ .+++++..+..++..+|++..+|..+.
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg 129 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK---DYPKAIDHASKVLKIDKNNVKALYKLG 129 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35889999999999999987 89999999988875 799999999999999999999999999
Q ss_pred HHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516 175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM 222 (423)
Q Consensus 175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~ 222 (423)
.++..++. +++.+..+.++++.+|.+..+|.....+...+
T Consensus 130 ~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 130 VANMYFGF--------LEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 99888776 68899999999999999999888877666554
No 140
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.52 E-value=0.0022 Score=51.69 Aligned_cols=108 Identities=7% Similarity=-0.087 Sum_probs=90.2
Q ss_pred HHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC--
Q 014516 134 NSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN-- 208 (423)
Q Consensus 134 n~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN-- 208 (423)
..+..+....+ .+.+++..+..++..+|.+. .+|.....+....+. +.+.+..+.++++.+|.+
T Consensus 6 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 6 YNVAFDALKNG---KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--------FQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHCCCCcc
Confidence 34455555554 78999999999999999998 799888888877665 789999999999999999
Q ss_pred -chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516 209 -YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL 254 (423)
Q Consensus 209 -Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L 254 (423)
..++...+.+...++. +++.+..+++.+..+|.+..+..-+..+
T Consensus 75 ~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGK--NTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 7779999888887765 8899999999999999988877666654
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.51 E-value=0.0015 Score=59.23 Aligned_cols=160 Identities=11% Similarity=0.061 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh--------CCCchhHhHHHHHHHHHhhhccC
Q 014516 115 VMIHSKALLLLS-CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY--------SPKSEQAWSHRRWVINMISRNCS 185 (423)
Q Consensus 115 ~L~~t~~lLl~n-Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~--------nPK~y~~W~hRrwll~~l~~~~~ 185 (423)
+++....++..+ |....+|+....+....+ .+.+++.++..++.. +|....+|.....++...+.
T Consensus 27 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 100 (283)
T 3edt_B 27 ALEDLEKTSGHDHPDVATMLNILALVYRDQN---KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--- 100 (283)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc---
Confidence 333333333333 677889999999888875 789999999999876 46677788888877776654
Q ss_pred hhHHhHHHHHHHHHHHHHh--------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc--------cCCChhHHH
Q 014516 186 TLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL--------HVADNSCFH 249 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~--------d~~N~SaW~ 249 (423)
+.+.+.++.++++. +|....+|.....+....+. +++.+.++.+.+.. +|.+..++.
T Consensus 101 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 101 -----YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 57777788887777 58888899998888877665 78889999999888 676777787
Q ss_pred HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhh---------cCCCccHHHHHHH
Q 014516 250 YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQ---------YVGREALWLHRRF 307 (423)
Q Consensus 250 yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~---------~p~neSaW~yrr~ 307 (423)
....+..... -+++.+.+..+++.. ++....+|.....
T Consensus 174 ~la~~~~~~g--------------------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 220 (283)
T 3edt_B 174 NLASCYLKQG--------------------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEE 220 (283)
T ss_dssp HHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHH
T ss_pred HHHHHHHHcC--------------------CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 7777766542 245556666666654 5666677766443
No 142
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.44 E-value=0.00078 Score=54.06 Aligned_cols=86 Identities=10% Similarity=0.010 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHH
Q 014516 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIER 193 (423)
Q Consensus 114 ~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (423)
+++..+..++..+|++..+|+....+....+ .+++++..+..++..+|.+..+|.....++...+. +.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--------RAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--------HHH
Confidence 4678889999999999999999999998876 79999999999999999999999999999888766 688
Q ss_pred HHHHHHHHHHhcCCCch
Q 014516 194 ESELVEKIAERSKMNYR 210 (423)
Q Consensus 194 EL~~~~~~l~~~pkNY~ 210 (423)
.+..+.++++.+|.+-.
T Consensus 72 A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 72 ARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccccc
Confidence 88999999999886543
No 143
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.43 E-value=0.0002 Score=58.16 Aligned_cols=99 Identities=3% Similarity=0.010 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHh---CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516 148 ILMDELHLSALVLSY---SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~---nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (423)
.+++++.++..++.. +|.+..+|.....++..++. +++.+..+.++++.+|.+..+|...+.++..++.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence 466788999999999 59999999999999888776 7899999999999999999999999999988765
Q ss_pred hhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516 225 EQVLDELKKSRNWSGLHVADNSCFHYRRRLML 256 (423)
Q Consensus 225 ~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~ 256 (423)
+.+.+..+.+.+..+|.|.....|...+..
T Consensus 77 --~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 77 --YEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp --HHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 889999999999999999998888776544
No 144
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.41 E-value=0.00084 Score=63.66 Aligned_cols=165 Identities=7% Similarity=-0.068 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHcc-CCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHH
Q 014516 111 LAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNK-RLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVI 177 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~------~TaWn~Rk~lL~~~-~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll 177 (423)
..++++.++..+|.+.|+. ..+++..+.+.... + .+++++..+..+|..+|+. ..+++....++
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH---DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4688999999999998765 56888888888874 5 7899999999999988865 45677777777
Q ss_pred HHhhhccChhHHhHHHHHHHHHHHHHhcCCCchh-------chHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHH
Q 014516 178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRA-------WNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY 250 (423)
Q Consensus 178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A-------W~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~y 250 (423)
..++. +.+.+..+.++++.+|.+... |...+.+...++. +.+.+.++++.+..+|++..+...
T Consensus 169 ~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 169 ALDGQ--------YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHTTC--------HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHHGGGCC---------H
T ss_pred HHhCC--------HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCCCcHHH
Confidence 77665 789999999999999988653 3444555555543 789999999999999998877655
Q ss_pred HHH--HHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHH
Q 014516 251 RRR--LMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWL 303 (423)
Q Consensus 251 R~~--Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~ 303 (423)
+.. +...+ ... ....+.+.+....+++..+|.+..+|.
T Consensus 239 ~~l~~l~~~~-~~~--------------~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 239 NFLKSLIDAV-NEG--------------DSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHHH-HTT--------------CTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHH-HcC--------------CHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 432 12211 110 012467778777777777775543333
No 145
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.31 E-value=0.0027 Score=63.08 Aligned_cols=102 Identities=8% Similarity=-0.109 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH
Q 014516 111 LAIEVMIHSKALLL----------------LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR 174 (423)
Q Consensus 111 ~~~~~L~~t~~lLl----------------~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr 174 (423)
..++++..+..+|. ++|.+..+|+.+..++...+ .+++++..+..+|..+|++..+|..+.
T Consensus 238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg 314 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRA 314 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35788888999888 88999999999999998875 799999999999999999999999999
Q ss_pred HHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516 175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (423)
Q Consensus 175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (423)
.++..+.. +++.+..+.++++.+|.|-.+|.....+...+.
T Consensus 315 ~~~~~~g~--------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 315 QGWQGLKE--------YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99988876 789999999999999999999988777766543
No 146
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.16 E-value=0.0042 Score=49.59 Aligned_cols=98 Identities=4% Similarity=-0.141 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH
Q 014516 151 DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE 230 (423)
Q Consensus 151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E 230 (423)
+.+..+..++..+|.++.+|.....++...+. +.+.+..+.++++.+|.+..+|...+.+....+. +.+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--RAGA 72 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHH
Confidence 45778899999999999999999998887765 7899999999999999999999999999887765 7888
Q ss_pred HHHHHHHHhccCCC--hhHHHHHHHHHHHh
Q 014516 231 LKKSRNWSGLHVAD--NSCFHYRRRLMLRN 258 (423)
Q Consensus 231 L~~~~k~i~~d~~N--~SaW~yR~~Ll~~l 258 (423)
+..+.+.+..+|.+ ..+......++..+
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 99999999988754 34444444444443
No 147
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.0072 Score=55.76 Aligned_cols=165 Identities=12% Similarity=0.030 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh--------CCCchhHhHHHHH
Q 014516 112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY--------SPKSEQAWSHRRW 175 (423)
Q Consensus 112 ~~~~L~~t~~lLl~--------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~--------nPK~y~~W~hRrw 175 (423)
.++++.....++.+ +|....+++....+....+ .+++++..+..++.. +|....+|.....
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN---KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 46777777777774 7888899999999988875 789999999999876 4666777777777
Q ss_pred HHHHhhhccChhHHhHHHHHHHHHHHHHhc--------CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc-------
Q 014516 176 VINMISRNCSTLQWIIERESELVEKIAERS--------KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------- 240 (423)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~--------pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------- 240 (423)
++...+. +.+.+.++.++++.. |....+|.....+....+. +.+.++++.+.+..
T Consensus 120 ~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 120 LYGKRGK--------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHTTTC--------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHcCc--------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence 7766554 567777777777764 6677778888887766654 78888888888887
Q ss_pred -cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHh---------hcCCCccHHHHHHHHH
Q 014516 241 -HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIK---------QYVGREALWLHRRFLS 309 (423)
Q Consensus 241 -d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~---------~~p~neSaW~yrr~Ll 309 (423)
++....+|.....+..... -+++.+.+..+++. ..+.+...|.....+.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQG--------------------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 6666667777776666542 14455555555554 3466667777755544
No 148
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0034 Score=49.04 Aligned_cols=69 Identities=4% Similarity=0.093 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
...+|..++.+....+ .+.+++..+..++..+|+++.+|..+..++..++. +++.+..+.++++.+|.+
T Consensus 3 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG---LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--------YTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCc
Confidence 3456777777776664 67888888888888888888888888877777665 677788888888888877
No 149
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.12 E-value=0.0045 Score=46.50 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=62.9
Q ss_pred CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516 128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (423)
Q Consensus 128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (423)
.+..+|.....+....+ .+.+++..+..++..+|.+..+|.....++...+. +++.+..+.++++.+|.
T Consensus 7 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCCC
Confidence 45667777777776664 67888888888888888888888888877776654 67788888888888888
Q ss_pred CchhchHHHHHHH
Q 014516 208 NYRAWNHRCWLVS 220 (423)
Q Consensus 208 NY~AW~hR~wll~ 220 (423)
+..+|.....+..
T Consensus 76 ~~~~~~~l~~~~~ 88 (91)
T 1na3_A 76 NAEAKQNLGNAKQ 88 (91)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8877776665543
No 150
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.10 E-value=0.0049 Score=56.92 Aligned_cols=132 Identities=7% Similarity=-0.047 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhC--------CCchhHhHHHH
Q 014516 111 LAIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYS--------PKSEQAWSHRR 174 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~--------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~n--------PK~y~~W~hRr 174 (423)
..++++.....++.+ +|....+++....+....+ .+++++.++..++... |....+|....
T Consensus 84 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 457888888888877 5778889999999888875 7899999999998763 66667777777
Q ss_pred HHHHHhhhccChhHHhHHHHHHHHHHHHHh--------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------
Q 014516 175 WVINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------ 240 (423)
Q Consensus 175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------ 240 (423)
.++...+. +.+.+.++.++++. +|....+|.....+....+. +++.+..+.+.+..
T Consensus 161 ~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 161 LLCQNQGK--------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHTTTC--------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC--------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcC
Confidence 77766554 67888888888887 77777888888888877655 67778888887753
Q ss_pred ---cCCChhHHHHHHHHH
Q 014516 241 ---HVADNSCFHYRRRLM 255 (423)
Q Consensus 241 ---d~~N~SaW~yR~~Ll 255 (423)
++.+...|.....+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEERE 248 (311)
T ss_dssp C------CCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHH
Confidence 444555555554433
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.07 E-value=0.01 Score=47.01 Aligned_cols=114 Identities=4% Similarity=-0.084 Sum_probs=85.4
Q ss_pred CchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 165 K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
+...+|.....+....+. +...+.+..++++.+|.+..+|.....+....+. +.+.+.++.+.+..+|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKD--------FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--YNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcccc
Confidence 344556666655554443 7889999999999999999999999888877654 889999999999998877
Q ss_pred -------hhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 245 -------NSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 245 -------~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
..+|..+..+...+. .+++.+++...++..+| +..++.....+.
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~--------------------~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEE--------------------KYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 666666665555431 36778889999999888 566666655444
No 152
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.0019 Score=51.02 Aligned_cols=75 Identities=8% Similarity=-0.049 Sum_probs=64.6
Q ss_pred hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516 125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (423)
Q Consensus 125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (423)
.+|++..+|...+.++...+ .+++++..+..++..+|++..+|.....++..++. +++.+..+.++++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHD---NASRALALFEELVETDPDYVGTYYHLGKLYERLDR--------TDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhh
Confidence 58999999999999998876 79999999999999999999999999999988876 68888999999988
Q ss_pred cCCCch
Q 014516 205 SKMNYR 210 (423)
Q Consensus 205 ~pkNY~ 210 (423)
.|++-.
T Consensus 71 ~~~~~~ 76 (100)
T 3ma5_A 71 AREEGT 76 (100)
T ss_dssp HHHHSC
T ss_pred hhcCCc
Confidence 776433
No 153
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.99 E-value=0.11 Score=47.62 Aligned_cols=163 Identities=5% Similarity=-0.139 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHH----hhhccC
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINM----ISRNCS 185 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~----l~~~~~ 185 (423)
..++++.++..++. |.+..+|.....+..... ...++++++.++..++..+ +..+|.....++.. ...
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~--- 93 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN--- 93 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC---
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC---
Confidence 35778888888887 788899999998887710 1137899999999999886 78888888887776 332
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHh----cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhc
Q 014516 186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF----MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEG 261 (423)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~ 261 (423)
+.+.+..+.++++.+ +..++.....+... .+ ..++.+.+..+.++.+ +..++.....+...-...
T Consensus 94 -----~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 94 -----TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR--DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp -----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred -----HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc--CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCC
Confidence 678888999998874 77888888888776 43 4788899999999876 667777777666541100
Q ss_pred ccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 262 FCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
..-+++.+.+..+++.. ++..+++....++
T Consensus 163 ----------------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 163 ----------------PKDLKKALASYDKACDL--KDSPGCFNAGNMY 192 (273)
T ss_dssp ----------------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 01267788888888875 4556666654443
No 154
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.98 E-value=0.01 Score=53.69 Aligned_cols=131 Identities=8% Similarity=-0.034 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh--------CCCchhHhHHHH
Q 014516 111 LAIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY--------SPKSEQAWSHRR 174 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~--------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~--------nPK~y~~W~hRr 174 (423)
..++++..+..++.+ +|....+|+....+....+ .+++++..+..++.. +|....+|....
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888877 5778889999999988875 789999999999987 577788888888
Q ss_pred HHHHHhhhccChhHHhHHHHHHHHHHHHHh--------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------
Q 014516 175 WVINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------ 240 (423)
Q Consensus 175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------ 240 (423)
.++..++. +++.+.++.++++. +|.+..++.....+....+. +++.+....+.+..
T Consensus 135 ~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 135 LLCQNQGK--------AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHTTTC--------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCC--------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcC
Confidence 88877665 67888888888888 88888889888888877765 77888888888875
Q ss_pred ---cCCChhHHHHHHHH
Q 014516 241 ---HVADNSCFHYRRRL 254 (423)
Q Consensus 241 ---d~~N~SaW~yR~~L 254 (423)
++.+...|.....+
T Consensus 205 ~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEER 221 (283)
T ss_dssp SSCCSSCCCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHH
Confidence 55666666665543
No 155
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.87 E-value=0.017 Score=55.40 Aligned_cols=118 Identities=6% Similarity=-0.067 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------CCCchhHhHHHHHHHHHhh
Q 014516 112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKRLLPILMDELHLSALVLSY------SPKSEQAWSHRRWVINMIS 181 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~----TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------nPK~y~~W~hRrwll~~l~ 181 (423)
.++++..+..++.++|++. .+|.....+....+ .+.+.+..+..++.. .|....+|.....+....+
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH---DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 5788889999999999884 57888888877765 788888888888765 3445667777777776665
Q ss_pred hccChhHHhHHHHHHHHHHHHHhcCCCch------hchHHHHHHHhcCh------------------hhHHHHHHHHHHH
Q 014516 182 RNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTR------------------EQVLDELKKSRNW 237 (423)
Q Consensus 182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~------------------~~~~~EL~~~~k~ 237 (423)
. +.+.+.++.++++..|++-. ++...+.+....+. ..+.+.+.++.+.
T Consensus 102 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 102 N--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp C--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 4 57777888888887776533 66666666554432 0156666666666
Q ss_pred Hhc
Q 014516 238 SGL 240 (423)
Q Consensus 238 i~~ 240 (423)
+..
T Consensus 174 l~~ 176 (406)
T 3sf4_A 174 LSL 176 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 156
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.80 E-value=0.012 Score=57.14 Aligned_cols=159 Identities=6% Similarity=-0.090 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------CCCchhHhHHHHHHHHHh
Q 014516 111 LAIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKRLLPILMDELHLSALVLSY------SPKSEQAWSHRRWVINMI 180 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~----TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------nPK~y~~W~hRrwll~~l 180 (423)
..++++..+..++.++|++. .+|+....+....+ .+++.+..+..++.. +|....+|.....++...
T Consensus 63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG---DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 35789999999999999987 58888888888775 789999999999887 677778888888888776
Q ss_pred hhccChhHHhHHHHHHHHHHHHHh------cCCCchhchHHHHHHHhcCh---------------hhHHHHHHHHHHHHh
Q 014516 181 SRNCSTLQWIIERESELVEKIAER------SKMNYRAWNHRCWLVSFMTR---------------EQVLDELKKSRNWSG 239 (423)
Q Consensus 181 ~~~~~~~~~~~~~EL~~~~~~l~~------~pkNY~AW~hR~wll~~~~~---------------~~~~~EL~~~~k~i~ 239 (423)
+. +.+.+..+.++++. +|....+|.....+....+. ..++..+.++.+.+.
T Consensus 140 g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 140 GR--------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp TC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CC--------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 65 56777777777777 55666677777777665432 015666777766665
Q ss_pred cc------CCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 240 LH------VADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 240 ~d------~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
.. +....+|..+..+..... -+++.+.+..+++...+.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLG--------------------DFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHhcCC
Confidence 42 222235555554444321 245566666666666554433
No 157
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.74 E-value=0.062 Score=49.39 Aligned_cols=159 Identities=6% Similarity=-0.074 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------CCCchhHhHHHHHHHHHh
Q 014516 111 LAIEVMIHSKALLLLSCDF----ATAWNSRKLIVSNKRLLPILMDELHLSALVLSY------SPKSEQAWSHRRWVINMI 180 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~----~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------nPK~y~~W~hRrwll~~l 180 (423)
..++++.....++..+|++ ..+++....+....+ .+.+.+..+..++.. .|....+|.....+....
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH---DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 3588999999999999998 467888888887775 789999999988876 455566777777777666
Q ss_pred hhccChhHHhHHHHHHHHHHHHHhcCCCch------hchHHHHHHHhcCh------------------hhHHHHHHHHHH
Q 014516 181 SRNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTR------------------EQVLDELKKSRN 236 (423)
Q Consensus 181 ~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~------------------~~~~~EL~~~~k 236 (423)
+. +.+.+..+.++++..|+.-. ++.....+....+. ..+.+.+....+
T Consensus 97 g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 97 GN--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp TC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred cC--------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 54 67888888888888776544 66666666655432 015666666666
Q ss_pred HHhc------cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516 237 WSGL------HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA 300 (423)
Q Consensus 237 ~i~~------d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS 300 (423)
.+.. .+....++.....+.... .-+++.+.+..+++...+.+..
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLL--------------------GNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHhcCC
Confidence 6554 222223444444444332 1245666666776666554433
No 158
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.70 E-value=0.0045 Score=47.81 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHhCCCchh-HhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516 148 ILMDELHLSALVLSYSPKSEQ-AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (423)
Q Consensus 148 ~~~~EL~~~~~lL~~nPK~y~-~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (423)
.+++++..+..++..+|++.. +|..+..++..++. +.+.+..+.++++.+|.+..+|
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD--------WQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTSTHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCcHHHH
Confidence 445555555555555555555 55555555544433 4455555555555555555554
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.70 E-value=0.013 Score=43.93 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=69.6
Q ss_pred CchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 165 K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
.+..+|.....+....+. +.+.+..+.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCC
Confidence 456677777776666554 7889999999999999999999999999887765 889999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 014516 245 NSCFHYRRRLMLR 257 (423)
Q Consensus 245 ~SaW~yR~~Ll~~ 257 (423)
..+|..+..+...
T Consensus 77 ~~~~~~l~~~~~~ 89 (91)
T 1na3_A 77 AEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999888776554
No 160
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.66 E-value=0.0055 Score=47.28 Aligned_cols=58 Identities=9% Similarity=-0.080 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH
Q 014516 112 AIEVMIHSKALLLLSCDFAT-AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH 172 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~T-aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h 172 (423)
.++++..+..++..+|++.. +|..++.+....+ .+++++..+..++..+|++..+|.+
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG---DWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 57899999999999999999 9999999998876 7899999999999999999999865
No 161
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.63 E-value=0.14 Score=46.77 Aligned_cols=147 Identities=5% Similarity=-0.133 Sum_probs=111.1
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHH----hhhccChhHHhHHHHHHHHHHH
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINM----ISRNCSTLQWIIERESELVEKI 201 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~----l~~~~~~~~~~~~~EL~~~~~~ 201 (423)
+|.+..++.....+....+ ++++++.++..++. |.+..+|.....++.. ... +.+.+.+..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~--------~~~A~~~~~~a 68 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK---DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKN--------LKKAASFYAKA 68 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCC--------HHHHHHHHHHH
Confidence 5788899999999888875 78999999999998 7888999888877776 332 68889999999
Q ss_pred HHhcCCCchhchHHHHHHHh----cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhch
Q 014516 202 AERSKMNYRAWNHRCWLVSF----MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVET 277 (423)
Q Consensus 202 l~~~pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~ 277 (423)
++.+ +..+|...+.+... .+ .+.+.+.+..+.+..+ +..++.....+...-...
T Consensus 69 ~~~~--~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~---------------- 126 (273)
T 1ouv_A 69 CDLN--YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVV---------------- 126 (273)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSS----------------
T ss_pred HHCC--CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCc----------------
Confidence 9886 78888888888776 43 4788999999999884 778888888777652100
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 278 YQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 278 ~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
..-+++.+.+..+++..+ +..+++....++
T Consensus 127 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 156 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN--DGDGCTILGSLY 156 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 012677888888888754 566776655544
No 162
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.62 E-value=0.0053 Score=48.37 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=62.3
Q ss_pred hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516 162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH 241 (423)
Q Consensus 162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d 241 (423)
.+|+++.+|.....++...+. +++.+..+.++++.+|.+..+|...+.+...++. +++.++.+++.+..+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN--------ASRALALFEELVETDPDYVGTYYHLGKLYERLDR--TDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence 589999999999999887765 7899999999999999999999999999988765 788899999998876
Q ss_pred CCC
Q 014516 242 VAD 244 (423)
Q Consensus 242 ~~N 244 (423)
+.+
T Consensus 72 ~~~ 74 (100)
T 3ma5_A 72 REE 74 (100)
T ss_dssp HHH
T ss_pred hcC
Confidence 543
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.59 E-value=0.03 Score=53.20 Aligned_cols=158 Identities=5% Similarity=-0.076 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHHH
Q 014516 112 AIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVINM 179 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~~ 179 (423)
.++++..+..++.+.+.. ..+++....+....+ .+++++..+..++...++. ..+++....++..
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ---RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 477888888888776533 456777777777665 6788999999988765432 2445555555443
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHH----
Q 014516 180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFH---- 249 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~---- 249 (423)
+. +++.+.+..++++.+|.. ..++.....+...++. +.+.+.++++.+...+.+..-+.
T Consensus 129 -g~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 129 -LD--------LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp -TC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -CC--------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 22 688889999999988764 3556666777666654 88999999999998776543221
Q ss_pred --HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 250 --YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 250 --yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
.+..+...+ .-+.+.+.+..+++ .+|++......
T Consensus 198 ~~~~g~~~~~~--------------------g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 198 CIAQVLVQLHR--------------------ADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHT--------------------TCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHHHHc--------------------CCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 111111111 13678889999999 99988765544
No 164
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.53 E-value=0.028 Score=54.56 Aligned_cols=154 Identities=6% Similarity=-0.112 Sum_probs=114.5
Q ss_pred chHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------hHhHHHHHHH
Q 014516 111 LAIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------QAWSHRRWVI 177 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------~~W~hRrwll 177 (423)
..++++..+..++.+ ++....+++..+.+....+ .+.+++..+..++...++.. .+++....+.
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK---QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 357889999999887 3446688888998888875 78999999999998755543 3555556666
Q ss_pred HHhhhccChhHHhHHHHHHHHHHHHHhcCCCc------hhchHHHHHHHhcChhhHHHHHHHHHHHHh-----cc-CCCh
Q 014516 178 NMISRNCSTLQWIIERESELVEKIAERSKMNY------RAWNHRCWLVSFMTREQVLDELKKSRNWSG-----LH-VADN 245 (423)
Q Consensus 178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~-----~d-~~N~ 245 (423)
..++. +++.+....++++..+++- .++...+++...++. +++.+.+..+.+. .+ |...
T Consensus 195 ~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 195 LDLKQ--------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHhcC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHH
Confidence 55554 6888899999998877664 378888888877765 8889999999998 56 6667
Q ss_pred hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516 246 SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG 297 (423)
Q Consensus 246 SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ 297 (423)
.++.....+...+. -+++.+.+..+++...+.
T Consensus 265 ~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 265 QAYFLITQIHYKLG--------------------KIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHHHH
Confidence 77877777766642 256677777777766443
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.018 Score=44.69 Aligned_cols=83 Identities=1% Similarity=-0.129 Sum_probs=68.1
Q ss_pred chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC-
Q 014516 166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD- 244 (423)
Q Consensus 166 ~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N- 244 (423)
+..+|..+..+....+. +.+.+..+.++++.+|.+..+|..++.+...++. +++.+..+.+.+..+|.+
T Consensus 3 ~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL--------YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTT
T ss_pred hHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcc
Confidence 45667777766665544 7899999999999999999999999999988765 889999999999999999
Q ss_pred -----hhHHHHHHHHHHHh
Q 014516 245 -----NSCFHYRRRLMLRN 258 (423)
Q Consensus 245 -----~SaW~yR~~Ll~~l 258 (423)
..++..+..+...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~ 91 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAV 91 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 66666666665554
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.16 E-value=0.05 Score=52.04 Aligned_cols=154 Identities=8% Similarity=-0.069 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh------HhHHHHHHHHH
Q 014516 112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ------AWSHRRWVINM 179 (423)
Q Consensus 112 ~~~~L~~t~~lLl~------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~------~W~hRrwll~~ 179 (423)
.++++.....++.+ .|....+++....+....+ .+++++..+..++...|+... +|.....+...
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 56777777777776 5666778888888888775 789999999999987776654 77777777766
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC------hhH
Q 014516 180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD------NSC 247 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N------~Sa 247 (423)
.+. +.+.+..+.++++..|++ ..++...+.+....+. +.+.+.++.+.+...+.. ..+
T Consensus 240 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 240 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCC--------hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 654 678889999999888876 5666667777666554 788888888888875544 334
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCC
Q 014516 248 FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGR 298 (423)
Q Consensus 248 W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~n 298 (423)
+..+..+.... .-+++.+++..+++...+..
T Consensus 310 ~~~la~~~~~~--------------------g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 310 CWSLGNAYTAL--------------------GNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHh
Confidence 44444444432 12566777777777665444
No 167
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.05 E-value=0.078 Score=51.29 Aligned_cols=154 Identities=5% Similarity=-0.041 Sum_probs=104.7
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch----hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHH
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE----QAWSHRRWVINMISRNCSTLQWIIERESELVEKI 201 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y----~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~ 201 (423)
+|.....+..++..+...+ .+.+++.++..++..+|++. .+|.....+....+. +.+.+..+.++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~a 112 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAG---DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD--------YNKAMQYHKHD 112 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHH
Confidence 3444555566677776665 78999999999999999987 477777777776654 67788888888
Q ss_pred HHh------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------cCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516 202 AER------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------HVADNSCFHYRRRLMLRNLEGFCYTQDNN 269 (423)
Q Consensus 202 l~~------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~ 269 (423)
++. +|....+|...+.+....+. +.+.+..+.+.+.. ++....++..+..+.......... ..
T Consensus 113 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~---~~ 187 (411)
T 4a1s_A 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ---RN 187 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH---HS
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc---cc
Confidence 887 68888899999988887765 77788888888777 555566777777776654320000 00
Q ss_pred CCCchhchHHHHHHHHHHHHHHHhhc
Q 014516 270 SSGYFVETYQIWKEELDWNESLIKQY 295 (423)
Q Consensus 270 ~~~~~~~~~~~~~eEL~~~~~~I~~~ 295 (423)
......+....+++.+++..+++...
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 00001122344677777777776653
No 168
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.86 E-value=0.057 Score=49.63 Aligned_cols=153 Identities=8% Similarity=-0.067 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh------HhHHHHHHHHH
Q 014516 112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ------AWSHRRWVINM 179 (423)
Q Consensus 112 ~~~~L~~t~~lLl~------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~------~W~hRrwll~~ 179 (423)
.++++.....++.+ .|....++.....+....+ .+++.+..+..++...|+... +|.....++..
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 46677777777665 4555667888888877765 789999999999987666543 67777777666
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh------H
Q 014516 180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS------C 247 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S------a 247 (423)
.+. +.+.+.++.++++..+++ ..++.....+....+. +++.+.+..+.+...+.... +
T Consensus 236 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 236 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp HTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCC--------HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 654 678888888888887776 5566666666666554 77888888888876554332 4
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516 248 FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG 297 (423)
Q Consensus 248 W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ 297 (423)
+.....+.... .-+++.+.+..+++...+.
T Consensus 306 ~~~la~~~~~~--------------------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 306 CWSLGNAYTAL--------------------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHH--------------------TCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHc--------------------CChHHHHHHHHHHHHHHHh
Confidence 44444443332 1356777888887776543
No 169
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.35 E-value=1.7 Score=40.17 Aligned_cols=135 Identities=10% Similarity=-0.036 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHhCCCcHH-----HHH-HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHH
Q 014516 111 LAIEVMIHSKALLLLSCDFAT-----AWN-SRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVIN 178 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~T-----aWn-~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~ 178 (423)
..+++++....++...|.... .|. ....+.... ..+++++..+..+|...++. ..+|+....+..
T Consensus 90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK---VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 357899999999988876432 222 233333433 37899999999999877665 456777777776
Q ss_pred HhhhccChhHHhHHHHHHHHHHHH---HhcCCCc----hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC--C----h
Q 014516 179 MISRNCSTLQWIIERESELVEKIA---ERSKMNY----RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA--D----N 245 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l---~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~--N----~ 245 (423)
..+. +++.+.++.+++ +..|.+. .++...+.+...++. +++.+.++++.+..... + .
T Consensus 167 ~~~~--------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 167 ENGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HcCC--------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6654 678888998888 5555533 577788888877655 88999999998876532 1 3
Q ss_pred hHHHHHHHHHHHh
Q 014516 246 SCFHYRRRLMLRN 258 (423)
Q Consensus 246 SaW~yR~~Ll~~l 258 (423)
.++...+.+...+
T Consensus 237 ~~~~~lg~~y~~~ 249 (293)
T 2qfc_A 237 QLYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4555555555543
No 170
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.25 E-value=0.047 Score=52.49 Aligned_cols=167 Identities=7% Similarity=-0.127 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH-HH--------
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSR-------KLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH-RR-------- 174 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~R-------k~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h-Rr-------- 174 (423)
....+++.+..++.++|+..-+|+.| ..+|.... ...+.+......+...|.....|.. -.
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~---r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW---YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH---HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH---HHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35789999999999999999999999 78887764 3345566666667766766655554 11
Q ss_pred ------------HHHHHhhhccC-----------hh--------------HHhHHHHHHHHHHHHHhcCCCc---hhchH
Q 014516 175 ------------WVINMISRNCS-----------TL--------------QWIIERESELVEKIAERSKMNY---RAWNH 214 (423)
Q Consensus 175 ------------wll~~l~~~~~-----------~~--------------~~~~~~EL~~~~~~l~~~pkNY---~AW~h 214 (423)
-++...+.... .. ..-|.+.+..+..+... |.++ .++.+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHHHH
Confidence 11211111000 00 01134444444433332 2222 36666
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHhcc--CC-ChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHH
Q 014516 215 RCWLVSFMTREQVLDELKKSRNWSGLH--VA-DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESL 291 (423)
Q Consensus 215 R~wll~~~~~~~~~~EL~~~~k~i~~d--~~-N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~ 291 (423)
.+-++..++. +.+.+.+..+.+... |. ...++.++..++.++. ..++......++
T Consensus 177 LG~al~~LG~--~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG--------------------r~deA~~~l~~a 234 (282)
T 4f3v_A 177 HGVAAANLAL--FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG--------------------NESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHH
T ss_pred HHHHHHHCCC--HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHH
Confidence 6767766654 677788888877544 44 3457888887777752 256778888999
Q ss_pred HhhcCCCccHHHH
Q 014516 292 IKQYVGREALWLH 304 (423)
Q Consensus 292 I~~~p~neSaW~y 304 (423)
+..+|+ .-+|.-
T Consensus 235 ~a~~P~-~~~~~a 246 (282)
T 4f3v_A 235 QTTHPE-PKVAAA 246 (282)
T ss_dssp HHHSCC-HHHHHH
T ss_pred HhcCCc-HHHHHH
Confidence 999998 655544
No 171
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.06 E-value=0.28 Score=47.39 Aligned_cols=146 Identities=5% Similarity=-0.068 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh---CCC---chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSY---SPK---SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~---nPK---~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (423)
..+.+++.+....+ .+++++..+..++.. .|. ...+++...++...++. +...+..+.++++.
T Consensus 104 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 104 YFNFFRGMYELDQR---EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--------TYFSMDYARQAYEI 172 (383)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence 35556888877765 799999999999986 232 45778888888877665 67888899999988
Q ss_pred cCCCc-------hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh------hHHHHHHHHHHHhhhcccccCCCCCC
Q 014516 205 SKMNY-------RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN------SCFHYRRRLMLRNLEGFCYTQDNNSS 271 (423)
Q Consensus 205 ~pkNY-------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~------SaW~yR~~Ll~~l~~~~~~~~~~~~~ 271 (423)
.++.- .++...+.+...++. +++.+.+..+.+...+.+. .+++..+.+...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g------------ 238 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS------------ 238 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC------------
Confidence 66553 356666666666554 7888999999888755443 36666666655431
Q ss_pred CchhchHHHHHHHHHHHHHHHh-----hc-CCCccHHHHHHHHH
Q 014516 272 GYFVETYQIWKEELDWNESLIK-----QY-VGREALWLHRRFLS 309 (423)
Q Consensus 272 ~~~~~~~~~~~eEL~~~~~~I~-----~~-p~neSaW~yrr~Ll 309 (423)
.+++.+.+..+++. .+ |....++.....+.
T Consensus 239 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 239 --------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 26777888888877 34 55555555544443
No 172
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.95 E-value=0.6 Score=43.41 Aligned_cols=134 Identities=8% Similarity=-0.032 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHhCCCcHH----H-HHH-HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh------HhHHHHHHHHH
Q 014516 112 AIEVMIHSKALLLLSCDFAT----A-WNS-RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ------AWSHRRWVINM 179 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~T----a-Wn~-Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~------~W~hRrwll~~ 179 (423)
.++++.....++...+.... + |.. .+.+... ...+++++..+..+|...++... +++.-..+...
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK---KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 57888888888887766544 2 222 2222222 24789999999999997666544 45555555554
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHh-------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC------hh
Q 014516 180 ISRNCSTLQWIIERESELVEKIAER-------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD------NS 246 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~-------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N------~S 246 (423)
++. ++..+.+..++++. .+....++...+.+...++. +++.+.++.+.+...+.. -.
T Consensus 168 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 168 NGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred cCC--------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 443 67788888888842 23333477778888777654 888999999998876444 35
Q ss_pred HHHHHHHHHHHh
Q 014516 247 CFHYRRRLMLRN 258 (423)
Q Consensus 247 aW~yR~~Ll~~l 258 (423)
++..++.+..++
T Consensus 238 ~~~~lg~~~~~~ 249 (293)
T 3u3w_A 238 LYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 666677666654
No 173
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.13 E-value=1.3 Score=47.60 Aligned_cols=164 Identities=9% Similarity=-0.056 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHH-HHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDEL-HLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL-~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++...++.+|..+|.++.+|..-..++...+ ...+.. .++..++..+|++..+|-.-.-+....+. +
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~---~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~--------~ 394 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN---TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK--------I 394 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS---CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------H
Confidence 34567899999999999999998888777665 345676 88899999999999999876666665543 3
Q ss_pred HHHHHHHHHHHHh-----------cCC-----------CchhchHHHHHHHhcChhhHHHHHHHHHHHHhc-cCCChhHH
Q 014516 192 ERESELVEKIAER-----------SKM-----------NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL-HVADNSCF 248 (423)
Q Consensus 192 ~~EL~~~~~~l~~-----------~pk-----------NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~-d~~N~SaW 248 (423)
+..-.+.+++++. .|. +-.+|..-.-+..+.+. .+..-+.+.++++. .+.....|
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHH
Confidence 3344444444443 243 22367665444433322 45555666666665 44445555
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHH-HHHHHH
Q 014516 249 HYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALW-LHRRFL 308 (423)
Q Consensus 249 ~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW-~yrr~L 308 (423)
-.-..+-.++.. -.+........++...|++...| .|..++
T Consensus 473 i~~A~lE~~~~~-------------------d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 473 LENAYIEYHISK-------------------DTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHTTTS-------------------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------------------CHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 543332222110 02344455566677778888888 454443
No 174
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.12 E-value=1.6 Score=43.47 Aligned_cols=155 Identities=9% Similarity=-0.066 Sum_probs=97.7
Q ss_pred HHHHhCCCcHHHHHH--HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC-h--hHHhHHHHH
Q 014516 121 ALLLLSCDFATAWNS--RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS-T--LQWIIERES 195 (423)
Q Consensus 121 ~lLl~nPe~~TaWn~--Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~-~--~~~~~~~EL 195 (423)
.+...-|++.+||-. |.+-.........+.+.+.+++.++...|.+..+|..+.++.-.+..... . ....+..++
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 345667888888875 55433332223457899999999999999999999988887654332211 1 111123333
Q ss_pred HHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchh
Q 014516 196 ELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFV 275 (423)
Q Consensus 196 ~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~ 275 (423)
.-+ .++..+|....+ |...-+..+....++..+...++.+.++++ .-+|..+.++..-.
T Consensus 265 ~a~-~a~~~~~~~a~~--~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~----------------- 323 (372)
T 3ly7_A 265 DNI-VTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK----------------- 323 (372)
T ss_dssp HHH-HTCGGGTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT-----------------
T ss_pred HHH-HhcccCCcCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC-----------------
Confidence 311 344566665444 433322222223588999999999999963 44554555444321
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCc
Q 014516 276 ETYQIWKEELDWNESLIKQYVGRE 299 (423)
Q Consensus 276 ~~~~~~~eEL~~~~~~I~~~p~ne 299 (423)
..+++.++.+.++++++|+.+
T Consensus 324 ---G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 324 ---GMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp ---TCHHHHHHHHHHHHHHSCSHH
T ss_pred ---CCHHHHHHHHHHHHhcCCCcC
Confidence 136788999999999999886
No 175
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.03 E-value=2.8 Score=38.69 Aligned_cols=143 Identities=6% Similarity=-0.070 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHH--HHhhhccChhHHhHHHHHHHHHHHHH
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVI--NMISRNCSTLQWIIERESELVEKIAE 203 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll--~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (423)
+|+....+..+.......+ .+++.+.++..++...|+....-..-.|.. ..+.... ..+++.+..+.++++
T Consensus 71 ~~~~~~~l~~~~~~~~~~~---~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQK---RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----VDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence 3444444544444444443 789999999999998887543322222211 1111110 126889999999998
Q ss_pred hcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHH---hccCCCh----hHHHHHHHHHHHhhhcccccCCCCC
Q 014516 204 RSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWS---GLHVADN----SCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 204 ~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i---~~d~~N~----SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
..+++ ..+++..+.+....+. +++.+.++.+.+ ...+.+. .++.....+.....
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~----------- 210 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS----------- 210 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-----------
Confidence 87766 3466677777766554 788899999888 5555543 46666666665531
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVG 297 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~ 297 (423)
-+++.+++..+++...+.
T Consensus 211 ---------~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 211 ---------RYEESLYQVNKAIEISCR 228 (293)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHHh
Confidence 367888888888876543
No 176
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.98 E-value=0.53 Score=46.84 Aligned_cols=124 Identities=8% Similarity=-0.009 Sum_probs=83.1
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc---CCc-----CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK---RLL-----PILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS 181 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~---~~~-----~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~ 181 (423)
+...+++.+.++++.++|++..+|-.+..+-... +.. ..+..++.- ...+...|..+.++ ..-.+..+.
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~--~alal~~l~ 289 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIY--QIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHH--HHHHHHHHh
Confidence 3347899999999999999999998766544211 000 011222221 12234556655544 333222222
Q ss_pred hccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516 182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN 245 (423)
Q Consensus 182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~ 245 (423)
.. -++..+..+++++..+| +..+|.-.+|+....+. +++.++.+.+.+.++|++.
T Consensus 290 ~g------d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~--~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 290 KG------KTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM--NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HT------CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCSHH
T ss_pred CC------CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCcC
Confidence 21 27889999999999996 56788888998887665 8899999999999999874
No 177
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.98 E-value=0.35 Score=37.91 Aligned_cols=74 Identities=12% Similarity=-0.026 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
+|++..+|..+..++...++.....+...++..+|..+|++..++.....+..+.+. +...+....++++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~--------y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR--------FQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC
Confidence 577778888877777432212345777888888888888888888777766665544 677888888888888
Q ss_pred CC
Q 014516 206 KM 207 (423)
Q Consensus 206 pk 207 (423)
|.
T Consensus 74 p~ 75 (93)
T 3bee_A 74 DP 75 (93)
T ss_dssp CT
T ss_pred CC
Confidence 87
No 178
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.75 E-value=1.3 Score=42.71 Aligned_cols=153 Identities=5% Similarity=-0.182 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------hHhHHHHHHHH
Q 014516 112 AIEVMIHSKALLLLS------CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------QAWSHRRWVIN 178 (423)
Q Consensus 112 ~~~~L~~t~~lLl~n------Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------~~W~hRrwll~ 178 (423)
.++++.....++.+. |....+++..+.+....+ .+..++..+..++...++.. .+++....+..
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK---QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 577888888888763 345567777788877775 78999999999998665532 34445555555
Q ss_pred HhhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHh-----ccCCChhH
Q 014516 179 MISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSG-----LHVADNSC 247 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~-----~d~~N~Sa 247 (423)
.++. ++..+....++++..++. ..++...+++....+. +++.+.+..+.+. .+|....+
T Consensus 194 ~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 194 DFKH--------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4443 677778888888764322 2355666777666554 7888999999998 77777777
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516 248 FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG 297 (423)
Q Consensus 248 W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ 297 (423)
+.....+..+.. -+++.+.+..+++...+.
T Consensus 264 ~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 264 LFGLSWTLCKAG--------------------QTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHHHH
Confidence 777777666541 267788888998887655
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=93.13 E-value=2 Score=36.45 Aligned_cols=104 Identities=5% Similarity=-0.164 Sum_probs=73.1
Q ss_pred hCC-CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH------hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516 125 LSC-DFATAWNSRKLIVSNKRLLPILMDELHLSALVLS------YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (423)
Q Consensus 125 ~nP-e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~------~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (423)
-+| ....+++....+....+ .+.+.+..+..++. ..|....+++....+....+. +++.+..
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~ 88 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFMD---RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------WDAARRC 88 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence 355 67788889988888775 78999999999988 445556677777777766654 5677777
Q ss_pred HHHHHHh---cC----CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516 198 VEKIAER---SK----MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH 241 (423)
Q Consensus 198 ~~~~l~~---~p----kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d 241 (423)
+.++++. .+ ..-.++...+.+....+. +++.+.++.+.+...
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence 7777776 33 223455566666665544 777788888877653
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=92.92 E-value=0.47 Score=44.68 Aligned_cols=125 Identities=8% Similarity=-0.050 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHH
Q 014516 111 LAIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVIN 178 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe------~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~ 178 (423)
..++++.++..+|.+.++ ...+++....+... + .+++++..+..++...|+. ..+++....++.
T Consensus 91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 346788888888877443 24577777777766 5 7899999999999987754 456667777776
Q ss_pred HhhhccChhHHhHHHHHHHHHHHHHhcCCCch------hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHH
Q 014516 179 MISRNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY 250 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~y 250 (423)
.++. +.+.+..+.++++..|++-. ++.....+...++ .+.+.+.++++.+ .+|....+...
T Consensus 167 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 167 RQQK--------FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA--DYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HcCC--------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 6655 78999999999999887643 3333333333333 4788999999999 99987665443
No 181
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=92.15 E-value=3.3 Score=36.51 Aligned_cols=166 Identities=6% Similarity=-0.180 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~ 192 (423)
++++.++.++... .+..+++.-..+....+ ++.+++.++..++.. .++.+++.-..++.. .. +.....
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g----~~~~~~ 70 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSG---DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP----QQADYP 70 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST----TSCCHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC----CCCCHH
Confidence 3455666666654 68888888888887764 789999999999875 577888877766554 21 112367
Q ss_pred HHHHHHHHHHHhcCCCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhhcccccCCC
Q 014516 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVA--DNSCFHYRRRLMLRNLEGFCYTQDN 268 (423)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~--N~SaW~yR~~Ll~~l~~~~~~~~~~ 268 (423)
+.+.+..++++ +.+..|+..-..+...-. ..++.+.+.+..+.+..+++ +..++.....+...-...
T Consensus 71 ~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~------- 141 (212)
T 3rjv_A 71 QARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG------- 141 (212)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS-------
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC-------
Confidence 88889998865 567788888777764311 23588999999999999884 478888888776652110
Q ss_pred CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
..-+++.+.+..+++.. |++..+.+....+.
T Consensus 142 ---------~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 142 ---------PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp ---------SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 01367889999999987 67777776655544
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=91.64 E-value=2.8 Score=33.29 Aligned_cols=98 Identities=9% Similarity=-0.048 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch------hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (423)
.+++....+....+ .+++.+..+..++...++.. .++.....+....+. +.+.+.++.++++.
T Consensus 10 ~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 10 RAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------FETASEYYKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence 45666666666654 78899999999888766543 355566666555544 67778888888877
Q ss_pred cCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516 205 SKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH 241 (423)
Q Consensus 205 ~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d 241 (423)
.++. ..++...+.+....+. +++.+.++.+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 79 ARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence 6654 4456666666655544 777788888777653
No 183
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.56 E-value=0.83 Score=42.42 Aligned_cols=117 Identities=15% Similarity=-0.049 Sum_probs=86.7
Q ss_pred chHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh-------CCCchhHhHHHHHHH
Q 014516 111 LAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSY-------SPKSEQAWSHRRWVI 177 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~-------nPK~y~~W~hRrwll 177 (423)
..++++.....+|.+.+.. ..+++.-+.+....+ .+++++..+..+|.. .+....+++....++
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 4588999999999865443 336788888887775 789999999999852 223345777888887
Q ss_pred HHhhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHh
Q 014516 178 NMISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSG 239 (423)
Q Consensus 178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~ 239 (423)
..++. +++.+.++.++++..+++ -.++...+.+...++. ..++.++++.+.+.
T Consensus 207 ~~~~~--------y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 207 YLDSR--------YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHhH--------HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH
Confidence 77765 688899999999887665 4577888888877763 25677777777765
No 184
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.50 E-value=0.66 Score=36.32 Aligned_cols=55 Identities=13% Similarity=-0.042 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc
Q 014516 109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS 166 (423)
Q Consensus 109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~ 166 (423)
+..++++......+|.++|++..++...+......+ ++++++.....+|..+|.+
T Consensus 22 ~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g---~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 22 QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF---RFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Confidence 355799999999999999999999999999888875 8999999999999999993
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=90.27 E-value=1.8 Score=34.54 Aligned_cols=116 Identities=9% Similarity=-0.029 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHHH
Q 014516 112 AIEVMIHSKALLLLSCDFA------TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVINM 179 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~------TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~~ 179 (423)
.++++.....++.+.++.. .+++....+....+ .+++.+.++..++...++. ..++....++...
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG---EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3566666666666654432 46777777777765 7899999999998865543 4455566666655
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHhcCCCc------hhchHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516 180 ISRNCSTLQWIIERESELVEKIAERSKMNY------RAWNHRCWLVSFMTREQVLDELKKSRNWSGL 240 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~ 240 (423)
.+. +++.+..+.++++..++.- .++.....+....+ .+++.+.++.+.+..
T Consensus 102 ~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 102 LQD--------YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG--NHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred Hhh--------HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence 544 5677777777776644331 22333333333333 366667777766654
No 186
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=90.20 E-value=2.4 Score=40.66 Aligned_cols=150 Identities=9% Similarity=-0.087 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCC----------CCCccchHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHcc
Q 014516 81 VYKAAKHAFISALRQYKTPGNFSGK----------SQDDTLAIEVMIHSKALLLLSCD-------FATAWNSRKLIVSNK 143 (423)
Q Consensus 81 lY~~A~~~f~~~l~~y~~~~~~~~~----------~~~~~~~~~~L~~t~~lLl~nPe-------~~TaWn~Rk~lL~~~ 143 (423)
-|..|...|.+++...+...+.... -......+.++.....++.+.++ ...+++..+.+....
T Consensus 116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence 3667777777777644332221000 00112357788888888877543 345677777777777
Q ss_pred CCcCCHHHHHHHHHHHHHhCCC------chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH-----hcCCCchhc
Q 014516 144 RLLPILMDELHLSALVLSYSPK------SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE-----RSKMNYRAW 212 (423)
Q Consensus 144 ~~~~~~~~EL~~~~~lL~~nPK------~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~-----~~pkNY~AW 212 (423)
+ .+++++..+..++...++ ...+++...++....+. ++..+....++++ .+|....++
T Consensus 196 ~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 196 K---HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--------DQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred C---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 5 789999999999885432 13456666777766654 6788889999998 888888888
Q ss_pred hHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516 213 NHRCWLVSFMTREQVLDELKKSRNWSGLHVA 243 (423)
Q Consensus 213 ~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~ 243 (423)
...+.+....+. +++.+.++++.+.....
T Consensus 265 ~~la~~~~~~g~--~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 265 FGLSWTLCKAGQ--TQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence 888888877765 78899999999987544
No 187
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=89.35 E-value=11 Score=33.10 Aligned_cols=168 Identities=9% Similarity=-0.070 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
.++++.++.+++.. .+..+++.-..+....+...+..+.+.++..++. +.++.+++.-..++..-.. +...+
T Consensus 34 ~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g----~~~d~ 105 (212)
T 3rjv_A 34 YQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQA----GATDV 105 (212)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGG----SSCCH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC----CccCH
Confidence 47888888888764 6888999888887764333478999999999865 5688888877766643111 11237
Q ss_pred HHHHHHHHHHHHhcC--CCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 192 ERESELVEKIAERSK--MNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 192 ~~EL~~~~~~l~~~p--kNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
.+.+.+..++++..| .+-.|+..-..+...-. ..+..+.+.+..+.+.. +.+..++.....+...-... .
T Consensus 106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg-~---- 179 (212)
T 3rjv_A 106 AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKG-F---- 179 (212)
T ss_dssp HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTT-T----
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCC-C----
Confidence 889999999999998 45788888887776521 23588899999999998 66667877777665542110 0
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
...-+++.+.+...++.. ++..+-..
T Consensus 180 ---------~~~d~~~A~~~~~~A~~~--g~~~A~~~ 205 (212)
T 3rjv_A 180 ---------IEPNKQKALHWLNVSCLE--GFDTGCEE 205 (212)
T ss_dssp ---------BCCCHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHc--CCHHHHHH
Confidence 001256778888888764 45555444
No 188
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=88.77 E-value=6.6 Score=39.12 Aligned_cols=161 Identities=14% Similarity=-0.036 Sum_probs=108.6
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516 118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (423)
Q Consensus 118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (423)
+...+..-+|+ +++....+....+...+..+.+.++..++..+|.....++.-..++...... .....+.+..
T Consensus 167 ~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~----~~d~~~A~~~ 239 (452)
T 3e4b_A 167 ICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLG----TPDEKTAQAL 239 (452)
T ss_dssp HHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGS----SCCHHHHHHH
T ss_pred HHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CCCHHHHHHH
Confidence 34444444554 7777777666644233678889999999999998888877666665432211 1236788888
Q ss_pred HHHHHHhcCCCchhchHHHHH-HHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhc
Q 014516 198 VEKIAERSKMNYRAWNHRCWL-VSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVE 276 (423)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wl-l~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~ 276 (423)
..+++ |.+-.++..-..+ .......+..+.+.++.+.++.+ +..|+.....+...- .+.
T Consensus 240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G--~g~------------- 299 (452)
T 3e4b_A 240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEG--KWV------------- 299 (452)
T ss_dssp HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHC--SSS-------------
T ss_pred HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcC--CCC-------------
Confidence 88887 8888899888887 42223346788889999888654 778888887766531 100
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 277 TYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 277 ~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
..-+.+.+.+..++. +++..+++....++
T Consensus 300 -~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 300 -PADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp -CCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 012567788888877 88888888776554
No 189
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=88.69 E-value=18 Score=35.82 Aligned_cols=165 Identities=5% Similarity=-0.110 Sum_probs=105.2
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc--CCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK--RLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ 188 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~--~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~ 188 (423)
..++++.++..++.. .+..++.....+.... +...+.++.+.++..++.. .+..++.....++...+. .
T Consensus 274 d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~-----~ 344 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGS-----E 344 (490)
T ss_dssp CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCC-----H
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----c
Confidence 356677777776543 5666777777666554 1123677777777777765 345677776666655321 1
Q ss_pred HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccC
Q 014516 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQ 266 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~ 266 (423)
......+.++.++++. .+-.+|.+-.++...-. ..+..+.+.+..+.++.+ +-.++.....+...-.+.
T Consensus 345 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~----- 415 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV----- 415 (490)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS-----
T ss_pred ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC-----
Confidence 2367778888888876 46778888877776511 134777888888888764 567777777766541100
Q ss_pred CCCCCCchhchHHHHHHHHHHHHHHHhhcCC---CccHHHH
Q 014516 267 DNNSSGYFVETYQIWKEELDWNESLIKQYVG---REALWLH 304 (423)
Q Consensus 267 ~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~---neSaW~y 304 (423)
..-+++.+.+.++++..+|+ |..++.+
T Consensus 416 -----------~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 416 -----------ERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 01257788888899888844 6655554
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=88.30 E-value=1.5 Score=41.91 Aligned_cols=118 Identities=5% Similarity=-0.112 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc--hhHhHHHHHHHHHhhhccChhHH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS--EQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~--y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
.+++.+.+..++..+|++. +...|..+....+ ++.+.+..+..+....+.. ..++.+...++..++.
T Consensus 118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~---r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~------- 186 (282)
T 4f3v_A 118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE---RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL------- 186 (282)
T ss_dssp HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT---CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC---CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-------
Confidence 4778888888888899998 8888888777764 8999999998776643222 3478888988888876
Q ss_pred hHHHHHHHHHHHHHhc--CC-CchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516 190 IIERESELVEKIAERS--KM-NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA 243 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~--pk-NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~ 243 (423)
+.+.+....+++... |. .-.++.++..++..++. .++......+++..+|.
T Consensus 187 -~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 187 -FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCc
Confidence 688999999998654 66 34599999999999987 68889999999999997
No 191
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.35 E-value=14 Score=34.61 Aligned_cols=120 Identities=13% Similarity=-0.102 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH------hHHHHHHHHHh
Q 014516 112 AIEVMIHSKALLLLSCDFAT-----AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA------WSHRRWVINMI 180 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~T-----aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~------W~hRrwll~~l 180 (423)
.++++.....+|...|.... +++....+....+ .+.+.+..+..++...|+.... ......+....
T Consensus 30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG---ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 57788888888888876532 5566666666554 7889999999998876654333 23344444333
Q ss_pred hhccChhHHhHHHHHHHHHHHHHhcCC--------CchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516 181 SRNCSTLQWIIERESELVEKIAERSKM--------NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244 (423)
Q Consensus 181 ~~~~~~~~~~~~~EL~~~~~~l~~~pk--------NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N 244 (423)
+. +.+.+..+.++++..++ ...++.....+....+. +++....+.+.+...+..
T Consensus 107 G~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 107 GF--------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASARSGIEVLSSY 168 (373)
T ss_dssp TC--------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTTS
T ss_pred CC--------HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhcc
Confidence 33 67777888888876643 23344455666555544 788889999998877653
No 192
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=86.91 E-value=4.7 Score=34.00 Aligned_cols=115 Identities=9% Similarity=-0.120 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHH------hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh---CCCc----hhHhHHHHHHHHH
Q 014516 113 IEVMIHSKALLL------LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY---SPKS----EQAWSHRRWVINM 179 (423)
Q Consensus 113 ~~~L~~t~~lLl------~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~---nPK~----y~~W~hRrwll~~ 179 (423)
++++.....++. ..|....+++....+....+ .+++.+..+..++.. .+.. ..+++....+...
T Consensus 43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 119 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG---NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH 119 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 455555555555 44556677888888887775 789999999998886 4422 3456666666666
Q ss_pred hhhccChhHHhHHHHHHHHHHHHHhcCCCchh------chHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516 180 ISRNCSTLQWIIERESELVEKIAERSKMNYRA------WNHRCWLVSFMTREQVLDELKKSRNWSGL 240 (423)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A------W~hR~wll~~~~~~~~~~EL~~~~k~i~~ 240 (423)
.+. +++.+..+.++++..++.-.. +.....+....+. +.+.+.+..+.+..
T Consensus 120 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 120 FGD--------LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWLRARDI 176 (203)
T ss_dssp HTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred hCC--------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHH
Confidence 554 567777777777654433222 2333444444333 66666666666654
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=84.83 E-value=32 Score=33.98 Aligned_cols=168 Identities=11% Similarity=-0.043 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516 111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW 189 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~ 189 (423)
...+++.++..++..+|....+++.-+.++.... ...+.++.+.++..+. |.++.++.....++...... .
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~-----~ 265 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPEL-----G 265 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGG-----C
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCC-----C
Confidence 5688999999999999999999888888886542 2357899999999988 99999999988874321111 1
Q ss_pred hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD 267 (423)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~ 267 (423)
.+.+.+..+.++++.. +..|+..-+.+...-. ..+..+.+.++.+.+ +.+..++.....+...-...
T Consensus 266 d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~------ 334 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLG------ 334 (452)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTS------
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCC------
Confidence 2688899999998665 7888888888776421 135788899999988 88888988888766541100
Q ss_pred CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516 268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS 309 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll 309 (423)
..-+++.+.+..++.+ +++..+.+....+.
T Consensus 335 ----------~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 335 ----------KVYPQKALDHLLTAAR--NGQNSADFAIAQLF 364 (452)
T ss_dssp ----------SCCHHHHHHHHHHHHT--TTCTTHHHHHHHHH
T ss_pred ----------CcCHHHHHHHHHHHHh--hChHHHHHHHHHHH
Confidence 0126778888888876 67778877766554
No 194
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=81.43 E-value=35 Score=36.32 Aligned_cols=131 Identities=8% Similarity=-0.044 Sum_probs=92.1
Q ss_pred HHHH-HHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh-----------CCC-----------chhH
Q 014516 113 IEVM-IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY-----------SPK-----------SEQA 169 (423)
Q Consensus 113 ~~~L-~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~-----------nPK-----------~y~~ 169 (423)
+++. +.+..++..+|.....|-.--.+....+ ..++.-.+++.++.. .|. +..+
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~---~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT---KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 4565 7888999999999999988887777765 577788888888764 353 3457
Q ss_pred hHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh-cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516 170 WSHRRWVINMISRNCSTLQWIIERESELVEKIAER-SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF 248 (423)
Q Consensus 170 W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~-~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW 248 (423)
|..-.-+..+.+. ++..-.+..+|++. .+..++.|-.-..+-.+.+. ..+......++.++..|.+-.-|
T Consensus 437 Wi~y~~~erR~~~--------l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 437 YCVYMNTMKRIQG--------LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-DTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHC--------HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCC--------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCchHHH
Confidence 8776655555443 56777788888887 55557777655444433322 35677788889999999998888
Q ss_pred -HHHHHHH
Q 014516 249 -HYRRRLM 255 (423)
Q Consensus 249 -~yR~~Ll 255 (423)
.|-.++.
T Consensus 508 ~~y~~fe~ 515 (679)
T 4e6h_A 508 NKYLDFLI 515 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 5555443
No 195
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=80.75 E-value=19 Score=30.97 Aligned_cols=97 Identities=11% Similarity=-0.047 Sum_probs=74.0
Q ss_pred HHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc-C-CCchhchHHHHHHHhcChhhHHHHHHHHH
Q 014516 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS-K-MNYRAWNHRCWLVSFMTREQVLDELKKSR 235 (423)
Q Consensus 158 ~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~-p-kNY~AW~hR~wll~~~~~~~~~~EL~~~~ 235 (423)
..+..+|.+.++...=.|+|-+... ....++-+.+++.+++.+ | ++--+++|.....-+++ ++.+.+.+++
T Consensus 23 ~e~~~~~~~~~~~F~ya~~Lv~S~~-----~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--~Y~~A~~y~~ 95 (152)
T 1pc2_A 23 SEKAAGSVSKSTQFEYAWCLVRSKY-----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVR 95 (152)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTCSS-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--CHHHHHHHHH
T ss_pred HHHccCCCcHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--CHHHHHHHHH
Confidence 3345677777777777888876443 234788899999999999 7 66777777766654444 5899999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHhhhc
Q 014516 236 NWSGLHVADNSCFHYRRRLMLRNLEG 261 (423)
Q Consensus 236 k~i~~d~~N~SaW~yR~~Ll~~l~~~ 261 (423)
++++.+|.|.-|-+=+..+-.++.+.
T Consensus 96 ~lL~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 96 GLLQTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998888777766443
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=80.29 E-value=13 Score=31.91 Aligned_cols=93 Identities=6% Similarity=-0.093 Sum_probs=56.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhC-C-CchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516 120 KALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYS-P-KSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (423)
Q Consensus 120 ~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~n-P-K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (423)
...+..+|....+...=..+|-........++.+.+++.++..+ | ..-..++|..-..-++.. +.+.+.+
T Consensus 22 ~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~--------Y~~A~~y 93 (152)
T 1pc2_A 22 QSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--------YEKALKY 93 (152)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC--------HHHHHHH
T ss_pred HHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC--------HHHHHHH
Confidence 33344445444444444444444322235678888888888887 6 334555554444333333 7888899
Q ss_pred HHHHHHhcCCCchhchHHHHHHH
Q 014516 198 VEKIAERSKMNYRAWNHRCWLVS 220 (423)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wll~ 220 (423)
++++++.+|.|-.|-+-+.-+-.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999988777766554443
No 197
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=80.12 E-value=36 Score=32.66 Aligned_cols=157 Identities=6% Similarity=-0.099 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC-----chhHhH-HHHHHHHHhhh
Q 014516 111 LAIEVMIHSKALLLLSC--DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK-----SEQAWS-HRRWVINMISR 182 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nP--e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK-----~y~~W~-hRrwll~~l~~ 182 (423)
..+++++++...|..+| .+..+.-..-+++...+ ..+.+.+.+..+...+|+ ...+-+ --.|+-...+.
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~---r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN---NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 45889999999988887 88888888888888876 788999999999999983 333222 23454443332
Q ss_pred ccChhHHhHHHHHHHHHHHHHhcCC---CchhchHHHHHHHhcChhhHHHHHHHHHHHHhc----------cCCChhHHH
Q 014516 183 NCSTLQWIIERESELVEKIAERSKM---NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL----------HVADNSCFH 249 (423)
Q Consensus 183 ~~~~~~~~~~~EL~~~~~~l~~~pk---NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~----------d~~N~SaW~ 249 (423)
. -+.+.+.+.+.+++..|. ....|+ +..+++. +++.-+.++.+++. +|.|-.+-.
T Consensus 192 ~------~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~--~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 192 E------TATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRN--IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp S------TTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTC--HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred c------cHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCC--HHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 1 257788999999999986 222233 2233333 66666667777776 477777755
Q ss_pred HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516 250 YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH 304 (423)
Q Consensus 250 yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y 304 (423)
....+-..+ +. +.-+++.++...+|+|.-+=-|
T Consensus 260 N~i~l~~~l-gk---------------------~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 260 NQITLALMQ-GL---------------------DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHT-TC---------------------TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHh-Ch---------------------HHHHHHHHHHHhCCCChHHHHH
Confidence 554333222 10 2346778888889998655444
No 198
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=74.54 E-value=68 Score=31.50 Aligned_cols=169 Identities=9% Similarity=-0.079 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (423)
Q Consensus 113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~ 191 (423)
++++.++..++.. .+..++.....+...+. ...+.++.+.++..++.. .+..++.....+....... .....
T Consensus 240 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g---~~~~~ 312 (490)
T 2xm6_A 240 TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG---VAKNR 312 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT---BCCCH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC---CcCCH
Confidence 4444444444433 33444444444444311 123556666666666543 3455555555554432000 00125
Q ss_pred HHHHHHHHHHHHhcCCCchhchHHHHHHHhcC-hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMT-REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS 270 (423)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~ 270 (423)
.+.+....++++.. +-.+|....++....+ .....+.+.++.+.++. .|..+|.+...+...-.+.
T Consensus 313 ~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~--------- 379 (490)
T 2xm6_A 313 EQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV--------- 379 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS---------
T ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC---------
Confidence 67777888887764 4567777777776543 23567788888888877 5678888888776541100
Q ss_pred CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
..-+++.+.+..+++.. ++..+|+....+..
T Consensus 380 -------~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 380 -------KKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYY 410 (490)
T ss_dssp -------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 01257788888888874 57778877666553
No 199
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=73.92 E-value=57 Score=30.32 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=60.6
Q ss_pred HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh-----HhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ-----AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
+...+..+....+ ++.+.+..+..+|...|.... +++....+....+. +...+..+.+++...|
T Consensus 16 ~~~~~a~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~ 84 (373)
T 1hz4_A 16 FNALRAQVAINDG---NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE--------LTRSLALMQQTEQMAR 84 (373)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHH
Confidence 3445555555554 789999999999998886643 23334444333332 5777788888888776
Q ss_pred CCchh------chHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516 207 MNYRA------WNHRCWLVSFMTREQVLDELKKSRNWSGLH 241 (423)
Q Consensus 207 kNY~A------W~hR~wll~~~~~~~~~~EL~~~~k~i~~d 241 (423)
+.-.. ..+...+....+ .+.+.+..+.+.+...
T Consensus 85 ~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 85 QHDVWHYALWSLIQQSEILFAQG--FLQTAWETQEKAFQLI 123 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
Confidence 64332 233444444444 3677778888777754
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=63.15 E-value=37 Score=32.51 Aligned_cols=90 Identities=6% Similarity=-0.068 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHccC--CcCCHHHHHHHHHHHHHhCCC-chhHhHHHHHHHHHh-hhcc
Q 014516 111 LAIEVMIHSKALLLLSCD--FATAWNSRKLIVSNKR--LLPILMDELHLSALVLSYSPK-SEQAWSHRRWVINMI-SRNC 184 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe--~~TaWn~Rk~lL~~~~--~~~~~~~EL~~~~~lL~~nPK-~y~~W~hRrwll~~l-~~~~ 184 (423)
....+....+.+|.++|. +-.+|.+.+.+..... ...+.+++-..+.++|.++|. +..+..+-...+-.. +.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-- 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-- 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC--
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC--
Confidence 346777889999999999 5669999998887731 013789999999999999995 488887766554332 32
Q ss_pred ChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 185 STLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
.......+++++..+|+-
T Consensus 256 ------~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 256 ------RAGFDEALDRALAIDPES 273 (301)
T ss_dssp ------HHHHHHHHHHHHHCCGGG
T ss_pred ------HHHHHHHHHHHHcCCCCC
Confidence 456678999999999874
No 201
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=59.23 E-value=57 Score=24.87 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHH
Q 014516 128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVIN 178 (423)
Q Consensus 128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~ 178 (423)
....+++.=..++...+ .++.++..+..++..+|.+..+.+.++++-.
T Consensus 44 ~~~~i~~~L~~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQG---DLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp CHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 34556666666777765 7899999999999999999999777774433
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=58.80 E-value=56 Score=24.91 Aligned_cols=65 Identities=9% Similarity=-0.000 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHhC-------CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHH
Q 014516 147 PILMDELHLSALVLSYS-------PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~~n-------PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll 219 (423)
.++..+..++..++... +....++.+-..++.+++. +...+.+.+++++.+|.+-.+...+.++-
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--------LDKALLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 37888899998888753 3456677666666666654 68899999999999999877766666443
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=57.67 E-value=68 Score=30.66 Aligned_cols=125 Identities=6% Similarity=-0.114 Sum_probs=87.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHcc-----C---CcCCHHHHHHHHHHHHHhCCC--chhHhHHHHHHHHHhhhccChhH
Q 014516 119 SKALLLLSCDFATAWNSRKLIVSNK-----R---LLPILMDELHLSALVLSYSPK--SEQAWSHRRWVINMISRNCSTLQ 188 (423)
Q Consensus 119 t~~lLl~nPe~~TaWn~Rk~lL~~~-----~---~~~~~~~EL~~~~~lL~~nPK--~y~~W~hRrwll~~l~~~~~~~~ 188 (423)
-..+-..+|++..++.+........ + ....+......+..++..+|+ .-.+|....-+..++.... -
T Consensus 141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~---g 217 (301)
T 3u64_A 141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESF---G 217 (301)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTT---T
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCcc---C
Confidence 3456678999999999988877542 1 234577888999999999999 5669998887777652110 0
Q ss_pred HhHHHHHHHHHHHHHhcCC-CchhchHHHHHHHh-cChhhHHHHHHHHHHHHhccCCChhHH
Q 014516 189 WIIERESELVEKIAERSKM-NYRAWNHRCWLVSF-MTREQVLDELKKSRNWSGLHVADNSCF 248 (423)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pk-NY~AW~hR~wll~~-~~~~~~~~EL~~~~k~i~~d~~N~SaW 248 (423)
.-.++.-.+.+++++++|. |-.+...-...+.. .+. .+....++++.+..+|+--..|
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd--~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN--RAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC--HHHHHHHHHHHHHCCGGGCSSC
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC--HHHHHHHHHHHHcCCCCCCCCh
Confidence 1157888999999999995 46666554443322 232 5666888899999888753333
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=51.46 E-value=3.6e+02 Score=31.71 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516 279 QIWKEELDWNESLIKQYVGREALWLHRRFLSM 310 (423)
Q Consensus 279 ~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (423)
..+++.+.+...++.+++.|-..|.....+..
T Consensus 1294 G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1294 GYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred CCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 46788899999999999999999988776653
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=48.03 E-value=1.6e+02 Score=29.67 Aligned_cols=110 Identities=10% Similarity=0.009 Sum_probs=69.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHccCCc
Q 014516 75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKRLL 146 (423)
Q Consensus 75 ~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~--------nPe~~TaWn~Rk~lL~~~~~~ 146 (423)
...+......++..+.++.+ ++. +...++++..+..+|.+ +|+..+..|.-..+....+
T Consensus 299 ~e~v~~~l~~a~~~le~a~~-~~~----------qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-- 365 (490)
T 3n71_A 299 QEVVKEMIQFSKDTLEKIDK-ARS----------EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-- 365 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHT----------TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHh----------CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--
Confidence 44455556666655544322 321 23357788888888865 4555567777777777765
Q ss_pred CCHHHHHHHHHHHHH--------hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 147 PILMDELHLSALVLS--------YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 147 ~~~~~EL~~~~~lL~--------~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
.+++++.+...+|. .||.-....+.-..++...+. +++...++.++++..-
T Consensus 366 -~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~--------~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 366 -AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH--------IEVGHGMICKAYAILL 424 (490)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH
Confidence 78999999998886 344444555666666665554 5666666666666543
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=45.34 E-value=2.1e+02 Score=27.21 Aligned_cols=117 Identities=7% Similarity=-0.068 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCC--CchhHhHHHHHHHHHhhhccChhHHhHHH
Q 014516 116 MIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSP--KSEQAWSHRRWVINMISRNCSTLQWIIER 193 (423)
Q Consensus 116 L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nP--K~y~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (423)
+...+.++...+...++...-..++...+ +++++|.++...+..+| .+..+..-.-.++.++++ ...
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g---~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--------~d~ 154 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILG---DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--------VST 154 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--------HHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--------HHH
Confidence 34445555554555666677777777765 79999999999999997 777777666666666655 567
Q ss_pred HHHHHHHHHHhcCC----CchhchH--HHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516 194 ESELVEKIAERSKM----NYRAWNH--RCWLVSFMTREQVLDELKKSRNWSGLHVA 243 (423)
Q Consensus 194 EL~~~~~~l~~~pk----NY~AW~h--R~wll~~~~~~~~~~EL~~~~k~i~~d~~ 243 (423)
+...+.++.+.+|. +-....+ -.|+--..+.+...+.+..+++++...|.
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 77888888888883 2223322 24554434444578889999998887775
No 207
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=40.45 E-value=1.6e+02 Score=24.57 Aligned_cols=87 Identities=5% Similarity=-0.025 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc-hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS-EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~-y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (423)
|..-|-.||=.-++.+.. ..+..+-+.++..++..+|.. -..+.|-.----+++. +.+.+.+|+.+++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~-~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd--------Y~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--------YSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHhhC
Confidence 444555666555565543 345678899999999888732 3333333322233333 789999999999999
Q ss_pred CCCchhchHHHHHHHhc
Q 014516 206 KMNYRAWNHRCWLVSFM 222 (423)
Q Consensus 206 pkNY~AW~hR~wll~~~ 222 (423)
|.|-.|=.-+.-+-..+
T Consensus 109 P~N~QA~~Lk~~Ie~ki 125 (134)
T 3o48_A 109 RNNKQVGALKSMVEDKI 125 (134)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99988776665554443
No 208
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=39.26 E-value=5.1e+02 Score=30.43 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch
Q 014516 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR 210 (423)
Q Consensus 131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~ 210 (423)
..|..-+..+...+ .+++++.+...+ ..|..-.-++.+++. ++.+++.+.++ +|-.
T Consensus 1196 ad~~~iGd~le~eg---~YeeA~~~Y~kA--------~ny~rLA~tLvkLge--------~q~AIEaarKA-----~n~~ 1251 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEK---MYDAAKLLYNNV--------SNFGRLASTLVHLGE--------YQAAVDGARKA-----NSTR 1251 (1630)
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHhh--------hHHHHHHHHHHHhCC--------HHHHHHHHHHh-----CCHH
Confidence 34444555555543 677777777765 366666666666654 67788888777 4456
Q ss_pred hchHHHHHHH---------hcC-------------------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516 211 AWNHRCWLVS---------FMT-------------------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN 258 (423)
Q Consensus 211 AW~hR~wll~---------~~~-------------------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l 258 (423)
+|.--++..- ..+ ...+++.+.++++.+.+++.+...|.....+..+.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 7753322220 000 02367788999999999987778888888877764
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=38.69 E-value=93 Score=30.95 Aligned_cols=86 Identities=7% Similarity=-0.008 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH--------hCCCchhHhHHHHH
Q 014516 112 AIEVMIHSKALLLL-----SCD---FATAWNSRKLIVSNKRLLPILMDELHLSALVLS--------YSPKSEQAWSHRRW 175 (423)
Q Consensus 112 ~~~~L~~t~~lLl~-----nPe---~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~--------~nPK~y~~W~hRrw 175 (423)
.++++..+.++|.+ -|+ ..+..|.-..+....+ .+++++.+...+|. .||.-....+.-..
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g---~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ---DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46778888888874 344 4556666677777665 78999999999886 35666667777777
Q ss_pred HHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 176 VINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
++...++ +++.+.+..++++..-+.
T Consensus 391 ~~~~qg~--------~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 391 LYMGLEN--------KAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHTTC--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhccC--------HHHHHHHHHHHHHHHHHH
Confidence 7777665 566777777777655443
No 210
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.03 E-value=92 Score=26.43 Aligned_cols=66 Identities=8% Similarity=-0.112 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC----CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516 110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR----LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS 181 (423)
Q Consensus 110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~----~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~ 181 (423)
....+.+.+.+.++.-+|+ .||.++--+. ...++.+++.+++.+|...|.|.++=.=+.-+-.++.
T Consensus 56 ~di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~ 125 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4457888999999999988 3666664321 2458999999999999999999988776665555543
No 211
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=27.99 E-value=1.9e+02 Score=23.76 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHccC----CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516 111 LAIEVMIHSKALLLLS-CDFATAWNSRKLIVSNKR----LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS 181 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~n-Pe~~TaWn~Rk~lL~~~~----~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~ 181 (423)
...+.+...+.++.-+ |+ .||.++-.+. ....+.+++.+++.+|...|.|.++-.=+.-+-.++.
T Consensus 53 d~~~GI~lLe~l~~~~~p~------~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 53 DIRKGIVLLEELLPKGSKE------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHHHTTTSCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3456777888877765 42 4555554321 1348999999999999999999999887776655543
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=27.52 E-value=4.6e+02 Score=25.97 Aligned_cols=57 Identities=2% Similarity=-0.244 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH
Q 014516 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH 172 (423)
Q Consensus 112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h 172 (423)
..++...++.+|..+|....+|..-...+...+ +.+........++.. |++..+|..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~---~~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG---QKEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 356778999999999999999998777776654 688999999999999 999999864
No 213
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=26.09 E-value=1.2e+02 Score=30.72 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=78.2
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (423)
+..+|+.-+..+...+ .++++..+.+.+ .-|.-..-++-+++. +++.++...++ .+
T Consensus 121 n~~a~~~IGd~~~~~g---~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~--------yq~AVea~~KA-----~~ 176 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEK---MYDAAKLLYNNV--------SNFGRLASTLVHLGE--------YQAAVDGARKA-----NS 176 (449)
T ss_dssp -------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC--------HHHHHHHHHHH-----TC
T ss_pred cHHHHHHHHHHHHHcC---CHHHHHHHHHHh--------hhHHHHHHHHHHhcc--------HHHHHHHHHHc-----CC
Confidence 3347777777666654 566666666655 345555555555544 45555555555 23
Q ss_pred chhchHHHHHHHhcC----------------------------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhh
Q 014516 209 YRAWNHRCWLVSFMT----------------------------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLE 260 (423)
Q Consensus 209 Y~AW~hR~wll~~~~----------------------------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~ 260 (423)
..+|.--....-..+ ...+++.+.++++.+..++.....|.....+..+..
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~- 255 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK- 255 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-
Confidence 333333222211111 123677789999999999888889998887777642
Q ss_pred cccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcC-----CCccHHHHHHHHHH
Q 014516 261 GFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYV-----GREALWLHRRFLSM 310 (423)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p-----~neSaW~yrr~Ll~ 310 (423)
++.+.+-++...+.|++.| .+.-+|.-..+|..
T Consensus 256 -----------------p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 256 -----------------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp -----------------HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 2345666777777788888 88899988888764
No 214
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=25.31 E-value=2.8e+02 Score=22.70 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhC-CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516 129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYS-PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (423)
Q Consensus 129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~n-PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (423)
.-+-.+|=.-++.+.. ..+..+-+.++..++..+ | ..||-++-.+.-..-. ..-+.+.+.+|+.+|+..|.
T Consensus 35 ~~~~F~yAw~Lv~S~~-~~d~~~GI~lLe~l~~~~~p------~~~Rd~lY~LAvg~yk-lg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGNYR-LKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTSCH------HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCCC
Confidence 3344444334444332 334667888898888876 4 2566655443210000 11278999999999999999
Q ss_pred CchhchHHHHHHHhc
Q 014516 208 NYRAWNHRCWLVSFM 222 (423)
Q Consensus 208 NY~AW~hR~wll~~~ 222 (423)
|-.|-.-+.-+-..+
T Consensus 107 n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 107 NNQAKELERLIDKAM 121 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999987776655443
No 215
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.81 E-value=3.3e+02 Score=22.95 Aligned_cols=87 Identities=8% Similarity=0.045 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516 127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (423)
Q Consensus 127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (423)
|.--|-.||=.-++.+.. ..+.++-+.++..++..+|. .||.++-.+.-..-. ..-+.+.+.+|+.+|+..|
T Consensus 37 vs~~t~F~YAw~Lv~S~~-~~di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAES------RRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCC
Confidence 555666677666666653 34677889999999998887 466665443210000 1237899999999999999
Q ss_pred CCchhchHHHHHHHh
Q 014516 207 MNYRAWNHRCWLVSF 221 (423)
Q Consensus 207 kNY~AW~hR~wll~~ 221 (423)
.|-.|=.-+.-+-..
T Consensus 109 ~n~QA~~Lk~~Ie~~ 123 (144)
T 1y8m_A 109 NNKQVGALKSMVEDK 123 (144)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 998776655544433
No 216
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.65 E-value=4.6e+02 Score=24.25 Aligned_cols=118 Identities=8% Similarity=-0.064 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------CCCchhHhHHHHHHHH
Q 014516 111 LAIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKRLLPILMDELHLSALVLSY------SPKSEQAWSHRRWVIN 178 (423)
Q Consensus 111 ~~~~~L~~t~~lLl~nPe------~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------nPK~y~~W~hRrwll~ 178 (423)
..+.++..+..++.+.++ ...++..-..+....+ .+.+++.++..++.. +|....++.....+..
T Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK---QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 346677777777665433 3456666677777665 789999999988874 2223445555555555
Q ss_pred HhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC-----hhhHHHHHHHHHHHHh
Q 014516 179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT-----REQVLDELKKSRNWSG 239 (423)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-----~~~~~~EL~~~~k~i~ 239 (423)
.++. +.+...+..+++...+..++......-+...++ ...+.....+....+.
T Consensus 187 ~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRN--------LAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCc--------HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4443 678888889998888877776655444443332 1245555555555543
Done!