BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014518
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP6 PE=3 SV=1
Length = 607
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQ 356
EV+DE+ + + L A ++RK+ Q A L A E A+ KR+R H GE+ + ++
Sbjct: 65 EVKDEEESEDENLTADQKRKK-KQEAANLAKRAEEKALERKRKREQHMGEEDSDSE 119
>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12)
GN=yhjX PE=1 SV=1
Length = 402
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN---THIFVSMISIW 406
+D+TL +++ K +W++ L SGL VI ++QSL + + V++ISI
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIA 262
Query: 407 NFLGRVGGGYFSEIIVR 423
N GR+ G S+ I R
Sbjct: 263 NLSGRLVLGILSDKIAR 279
>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1
Length = 489
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 28 CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLG-----DSVGFLAGSLCEVLPIWGA 82
CAG LF +PV++ L+Y Q QI +G +G +G+LA C G
Sbjct: 41 CAGSVLLFALFTPVLQHQLHYTQFQINIIGSFTSIGMYLPLPVLGYLAD--CH-----GP 93
Query: 83 LLVGALQN-FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK 141
+L+ + F G+ L T W + I + + AL++C + +PK
Sbjct: 94 VLLSVISVLFFSPGYT-LAATVVQNDWSFWYLAISFGLIGCATSALYFTALLTCAKIYPK 152
Query: 142 SRGPVVGILKGFAGLGGAILTQV 164
S+G + GL I ++V
Sbjct: 153 SKGLTISAPVTCYGLSSLIGSRV 175
>sp|G2TRT7|YCYH_SCHPO Putative uncharacterized transmembrane protein C1235.17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1235.17 PE=4 SV=1
Length = 150
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 200 GHRQVRPSDSSSFTFIYSVCLLLAAYL-MGVMLVEDLVDLNHTVIIIFTVILFVLLFIPI 258
G + +D SS+ + SV L L Y+ +G M++ + H + + T+ + + + I
Sbjct: 35 GQNKEGNADKSSYFKVVSVILTLRGYVQLGYMVIHLVTHTLHCITLYITITHYTIYIVNI 94
Query: 259 VIPIILSFFLERTDPAEEALLSKPENMEPGKSNQE 293
VI + L ++ER + L+ EN+ K ++
Sbjct: 95 VIQLWLYRYIERFFYS--LLVEYCENLCDSKEKRK 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.143 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,277,472
Number of Sequences: 539616
Number of extensions: 6644692
Number of successful extensions: 22814
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 22800
Number of HSP's gapped (non-prelim): 32
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)