BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014521
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 150/336 (44%), Gaps = 13/336 (3%)
Query: 30 VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89
VN G + IS+KGLD+ + +++PD S KI +GK H + ++ I
Sbjct: 1 VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58
Query: 90 YSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAXXXXXXXXXX 149
++ SS + P++ L S + A+ ++ ++ L +S +
Sbjct: 59 REFQLPSSQISM-VPNVGLKFSISNANIKISGKWKAQKRFL-KMSGNFDLSIEGMSISAD 116
Query: 150 XXXXXKEQGGIVKVILVDCGSHVRDISIKV-DGGASWLYQALFEAFEGKIKSAVESAVTK 208
G + C SH+ + + + WL Q + E +++ + S V +
Sbjct: 117 LKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCE 176
Query: 209 KISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSM 267
K++ ++ KL FQ+LP + +A +N V P + +++V++ G F + + +
Sbjct: 177 KVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236
Query: 268 LNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDD--IPEKS--VL 323
+ E A+ +M+ + L++ F++ LVY A L + D IP++S L
Sbjct: 237 PPFAPPVMEFPAAHD---RMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRL 293
Query: 324 NTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVS 359
T + +P++ ++PN + +++S ++PP + V
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQ 329
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 150/336 (44%), Gaps = 13/336 (3%)
Query: 30 VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89
VN G + IS+KGLD+ + +++PD S KI +GK H + ++ I
Sbjct: 1 VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58
Query: 90 YSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAXXXXXXXXXX 149
++ SS + P++ L S + A+ ++ ++ L +S +
Sbjct: 59 REFQLPSSQISM-VPNVGLKFSISNANIKISGKWKAQKRFL-KMSGNFDLSIEGMSISAD 116
Query: 150 XXXXXKEQGGIVKVILVDCGSHVRDISIKV-DGGASWLYQALFEAFEGKIKSAVESAVTK 208
G + C SH+ + + + WL Q + E +++ + S V +
Sbjct: 117 LKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCE 176
Query: 209 KISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSM 267
K++ ++ +L FQ+LP + +A +N V P + +++V++ G F + + +
Sbjct: 177 KVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236
Query: 268 LNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDD--IPEKS--VL 323
+ E A+ +M+ + L++ F++ LVY A L + D IP++S L
Sbjct: 237 PPFAPPVMEFPAAHD---RMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRL 293
Query: 324 NTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVS 359
T + +P++ ++PN + +++S ++PP + V
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQ 329
>pdb|2OBD|A Chain A, Crystal Structure Of Cholesteryl Ester Transfer Protein
pdb|4EWS|A Chain A, Crystal Structure Of Cholesteryl Ester Transfer Protein In
Complex With Inhibitors
pdb|4F2A|A Chain A, Crystal Structure Of Cholestryl Esters Transfer Protein In
Complex With Inhibitors
Length = 476
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 117/320 (36%), Gaps = 25/320 (7%)
Query: 52 LINKATSSIIPLEL-----PDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDP-- 104
++N T+ +I PDI K + L+G+V L NI I + I SS VE +
Sbjct: 22 VLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSIASSQVELVEAKS 81
Query: 105 -DLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAXXXXXXXXXXXXXXXKEQGGIVKV 163
D+ + + + Y+ WL D G V+
Sbjct: 82 IDVSIQDVSVVFKGTLKYGYTTAWWLGI---DQSIDFEIDSAIDLQINTQLTADSGRVRT 138
Query: 164 ILVDCGSHVRDISIKVDGGAS--WLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIF 221
DC + + + G W+ Q +K ++ + K+I+ + +
Sbjct: 139 DAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINVISNIMADFV 198
Query: 222 QSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEING--LFTAISGTSMLNYYHKGFESSA 279
Q+ I ++ S PV++ S +E G ++ +S L + S
Sbjct: 199 QTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLPTF------SP 252
Query: 280 SCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGW---RHIIPQLY 336
+ ++M+ +E VF S A V F RL + K+VL T G+ + I ++
Sbjct: 253 TLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQEIFQEVV 312
Query: 337 TQYPNDGMNLYISVTSPPKI 356
+P+ + + PKI
Sbjct: 313 GGFPSQA-QVTVHCLKMPKI 331
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Nostoc Punctiforme
Length = 567
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 23 PTSA---HVQVNEGGYISAVISKKGLDFFKNYL 52
PT A + +N GYISA ++++ +D F+NY+
Sbjct: 442 PTHAEQFNQNINSQGYISANLTRRSVDIFQNYM 474
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
Length = 565
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 23 PTSA---HVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKK 73
PT A + +N GY SA ++++ +D F+NY+ A + + ++ D+ KK
Sbjct: 442 PTHAEQFNQNINSQGYTSATLARRSVDIFQNYV---AIALMFGVQAVDLRTYKK 492
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|B Chain B, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|C Chain C, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|D Chain D, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
Length = 539
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 23 PTSA---HVQVNEGGYISAVISKKGLDFFKNYL 52
PT A + +N GY SA ++++ +D F+NY+
Sbjct: 418 PTHAEQFNQNINSQGYTSATLARRSVDIFQNYV 450
>pdb|2FL8|A Chain A, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|B Chain B, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|C Chain C, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|D Chain D, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|E Chain E, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|F Chain F, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|G Chain G, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|H Chain H, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|I Chain I, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|J Chain J, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|K Chain K, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|L Chain L, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|M Chain M, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|N Chain N, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|O Chain O, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|P Chain P, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|Q Chain Q, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|R Chain R, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL9|A Chain A, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|B Chain B, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|C Chain C, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|D Chain D, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|E Chain E, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|F Chain F, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|G Chain G, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|H Chain H, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|I Chain I, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|J Chain J, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|K Chain K, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|L Chain L, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|M Chain M, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|N Chain N, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|O Chain O, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|P Chain P, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|Q Chain Q, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|R Chain R, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
Length = 602
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 192 EAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNT------SFVRSPV 245
E F + S ++I L +KL S SL I V+D+++M + +
Sbjct: 245 ETFMDGVSQWRSSYTRRQIRLLDSKLTSK-TSLEGSIYVTDLSTMKSIPFSAFGLIPGEP 303
Query: 246 LSDSSVEVEINGLFTAISGTSMLNYYH 272
++ +S+EV NG+ ++GT + +H
Sbjct: 304 INPNSLEVRFNGILQELAGTVGMPLFH 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,926,172
Number of Sequences: 62578
Number of extensions: 470022
Number of successful extensions: 1108
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 15
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)