Query 014521
Match_columns 423
No_of_seqs 150 out of 435
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4160 BPI/LBP/CETP family pr 100.0 4.1E-50 8.9E-55 414.7 40.3 369 32-409 26-415 (492)
2 cd00025 BPI1 BPI/LBP/CETP N-te 100.0 3.4E-46 7.4E-51 349.6 26.4 220 35-260 1-223 (223)
3 smart00328 BPI1 BPI/LBP/CETP N 100.0 3.1E-46 6.7E-51 350.6 24.5 221 39-264 1-225 (225)
4 PF01273 LBP_BPI_CETP: LBP / B 100.0 3.2E-28 6.8E-33 217.5 23.4 161 44-216 1-163 (164)
5 PF02886 LBP_BPI_CETP_C: LBP / 100.0 1.1E-27 2.4E-32 227.0 15.6 143 249-394 1-148 (238)
6 smart00329 BPI2 BPI/LBP/CETP C 99.9 1.3E-23 2.9E-28 194.0 15.5 127 284-410 1-140 (202)
7 cd00264 BPI BPI/LBP/CETP domai 99.9 1.9E-22 4.2E-27 187.0 22.5 201 35-258 1-208 (208)
8 cd00026 BPI2 BPI/LBP/CETP C-te 99.9 4.7E-22 1E-26 183.3 15.2 123 287-409 1-134 (200)
9 cd00264 BPI BPI/LBP/CETP domai 99.0 6E-09 1.3E-13 96.4 11.8 105 287-394 1-109 (208)
10 PF06585 JHBP: Haemolymph juve 98.4 4.3E-05 9.3E-10 72.7 19.8 183 42-226 40-244 (248)
11 smart00700 JHBP Juvenile hormo 98.3 0.00044 9.6E-09 64.9 24.3 183 42-226 16-219 (225)
12 PF14613 DUF4449: Protein of u 92.3 0.47 1E-05 42.1 6.7 56 170-225 2-58 (164)
13 PF14356 DUF4403: Domain of un 75.0 95 0.0021 32.0 14.8 65 158-223 316-384 (427)
14 PF10296 DUF2404: Putative int 73.0 26 0.00056 27.7 7.9 24 47-70 16-39 (91)
15 TIGR02610 PHA_gran_rgn putativ 44.3 98 0.0021 24.6 6.4 26 181-206 65-90 (91)
16 PF09650 PHA_gran_rgn: Putativ 34.9 74 0.0016 25.1 4.3 23 183-205 64-86 (87)
17 TIGR03545 conserved hypothetic 34.1 42 0.00092 35.9 3.7 15 136-150 452-466 (555)
18 PF15144 DUF4576: Domain of un 31.4 47 0.001 25.5 2.5 20 12-32 10-29 (88)
19 PF06585 JHBP: Haemolymph juve 29.1 4.7E+02 0.01 24.2 15.5 33 37-70 31-63 (248)
20 PF09256 BaffR-Tall_bind: BAFF 25.8 33 0.00072 21.4 0.7 11 412-422 9-21 (31)
21 PF08194 DIM: DIM protein; In 25.2 1.1E+02 0.0024 20.0 3.0 23 13-41 7-29 (36)
22 PF06597 Clostridium_P47: Clos 20.1 1E+03 0.022 24.9 14.7 71 38-115 237-310 (456)
23 PF14135 DUF4302: Domain of un 20.0 1.7E+02 0.0038 27.4 4.7 19 399-417 85-103 (235)
No 1
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]
Probab=100.00 E-value=4.1e-50 Score=414.66 Aligned_cols=369 Identities=26% Similarity=0.400 Sum_probs=323.7
Q ss_pred CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEEEE
Q 014521 32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV 110 (423)
Q Consensus 32 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l~i 110 (423)
.+||+++|++++|++|+++.+...+++++.++++||+.++.+.+.+|++.|.++++++.++..+.+.+++ +..++.|++
T Consensus 26 ~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~~~~ 105 (492)
T KOG4160|consen 26 HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLSWSI 105 (492)
T ss_pred cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEEEEE
Confidence 6788999999999999999999999999999999999999998888999999999999999999999999 778999999
Q ss_pred eCceEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE-e-cCCeEEEEEeeeeEEeceEEEEEECCchhhHH
Q 014521 111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGGASWLYQ 188 (423)
Q Consensus 111 ~~~~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~-~~G~p~v~~~~C~~~i~~v~i~~~Gg~s~l~n 188 (423)
+|+.+.+.++|++ .. |+ ...+|.+++.++|+++.+.+.++ + .+|+|.++...|.+.++++++.+++-.+|+++
T Consensus 106 ~n~~~~~~~~~~~-~~-~~---~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~ 180 (492)
T KOG4160|consen 106 TNANISLSGRWKA-RT-RF---LALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQ 180 (492)
T ss_pred eeEEEEEeeeeEe-EE-EE---EecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHH
Confidence 9999999999999 43 32 24459999999999999999998 6 88999999999999999999988855999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccccccCCeeccceeeeeeeEEEEe-ccCcc
Q 014521 189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTA-ISGTS 266 (423)
Q Consensus 189 ~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idysl~~~P~it~~~i~~~l~G~~~~-~~~~~ 266 (423)
.|.+.+++.||..++.++|+++++.+ .++|.+++++|+..++|+...|||+++++|.+|++++|++++|++++ .++..
T Consensus 181 ~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~ 260 (492)
T KOG4160|consen 181 LFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVT 260 (492)
T ss_pred HHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCC
Confidence 99999999999999999999999999 59999999999999999999999999999999999999999999999 55544
Q ss_pred ccCCCCCCCCCcc-CCCCCCceEEEEEchhhhHHHHHHHHhcCeeeEEe-cccCC-cc--ccccch--hhhhhhhHhhcC
Q 014521 267 MLNYYHKGFESSA-SCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII-DDIPE-KS--VLNTSG--WRHIIPQLYTQY 339 (423)
Q Consensus 267 ~~P~~~~~~p~~~-~~~~~~~Ml~l~lSey~~NS~l~~~~~ag~L~~~i-~~iP~-~~--~LnTs~--~g~liP~L~~~y 339 (423)
++ + ..|... .++++++|+++|+|||++||++++||++|.+++.+ ++.|+ ++ .++|+. +|+++|+|+++|
T Consensus 261 ~~-~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~ 336 (492)
T KOG4160|consen 261 PP-F---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQY 336 (492)
T ss_pred Cc-c---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHC
Confidence 33 2 233333 34447999999999999999999999999999999 44444 44 566664 677999999999
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCcEEEEEeeEEEEEEe-CCCceeeEEEEEEEeecc--------ccccccceeecceee
Q 014521 340 PNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLVSLIE--------NLSAAHNIQPFTNFI 409 (423)
Q Consensus 340 Pn~~~~l~i~~~~~P~v~i~~~~~~~~~~~~i~~~v~-~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~ 409 (423)
||+++++++++.++|.|.+++++..+...+.+++++. |+.+..+++++++++++. ++-|.++|++|....
T Consensus 337 Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~ 415 (492)
T KOG4160|consen 337 PNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFKIEV 415 (492)
T ss_pred CCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeEEEE
Confidence 9999999999999999999999999999999988855 666777999876655544 235566666655443
No 2
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=3.4e-46 Score=349.65 Aligned_cols=220 Identities=30% Similarity=0.477 Sum_probs=212.7
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEEEEeCc
Q 014521 35 YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGA 113 (423)
Q Consensus 35 Gi~vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l~i~~~ 113 (423)
|+++|||+|||+|+++++++.+++++.++++||++++.+++++|+++|+++|++|+++++|++++++ |++|+.+.++++
T Consensus 1 Gi~~rlt~~gL~y~~~~~~~~~~~~l~~i~iPdi~~~~~~~~iG~v~~~~s~i~I~~~~lp~s~l~~~~~~gi~~~~s~~ 80 (223)
T cd00025 1 GAVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLPSSSIKLVEVKGLDLSISNV 80 (223)
T ss_pred CeEEEEcHHHHHHHHHHHHHHHHHHhhcCCCCCccCccccccccEEEEEEEeEEEEEEecCCCceEEcCCCceEEEEeCC
Confidence 7899999999999999999999999999999999999999989999999999999999999999999 999999999999
Q ss_pred eEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE-ecCCeEEEEEeeeeEEeceEEEEEECCchhhHHHHHH
Q 014521 114 TADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFE 192 (423)
Q Consensus 114 ~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~Gg~s~l~n~f~~ 192 (423)
++.++|+|+|+++ + ++++|.+++.++|+++++++.++ +++|+|+++..+|++++++++++++||.+|+||.|.+
T Consensus 81 si~l~~~w~~~~~---~--i~~~G~~~l~v~gv~i~~~l~l~~d~~G~p~v~~~~C~~~v~~~~i~l~gg~~~l~~~f~~ 155 (223)
T cd00025 81 SIGLSGVWKYNYR---F--ILDGGNVELSVEGMNIQADLRLGRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFMN 155 (223)
T ss_pred eEEEEEEEEEeeE---E--EEecEEEEEEEeEEEEEEEEEEeeCCCCCeEEEeCCCCcccCcEEEEEeCChHHHHHHHHH
Confidence 9999999999985 3 69999999999999999999998 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCccccccccccccccccCCeeccceeeeeeeEEEE
Q 014521 193 AFEGKIKSAVESAVTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFT 260 (423)
Q Consensus 193 ~~~~~I~~~l~~~iC~~i~~~i~-~ln~~L~tlp~~~~i~~~~~idysl~~~P~it~~~i~~~l~G~~~ 260 (423)
.+++.+|+.+++++|+++...++ ++|..|+ +|+..|+|+.+.+||+|+++|.+|++|+|+++||+||
T Consensus 156 ~i~~~l~~~l~~~iCp~i~~~i~~~~~~~l~-lp~~~~vd~~~~idysl~~~P~~t~~~l~~~~kg~f~ 223 (223)
T cd00025 156 FIESLLKKVLKGQLCPVIDASLVSMLESLLQ-LPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223 (223)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhhcC-CceEeccCCcEEEEEEeecCCccccceeeeeeeEEEC
Confidence 99999999999999999999985 7788888 9999999999999999999999999999999999996
No 3
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=100.00 E-value=3.1e-46 Score=350.62 Aligned_cols=221 Identities=22% Similarity=0.379 Sum_probs=214.3
Q ss_pred EechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEEEEeCceEEE
Q 014521 39 VISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGATADC 117 (423)
Q Consensus 39 rit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l~i~~~~i~l 117 (423)
|||++||+|+++++..+++++++++++||++++.+++++|+++|.++||+|+++++|++++++ |+.||.|+++|+++.+
T Consensus 1 rit~~gL~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~v~~~~~~i~I~~~~~~~s~~~~~p~~Gi~l~is~~si~~ 80 (225)
T smart00328 1 RITQKGLDYAAQEGALALQKELPKITIPDIRGDFAIKLLGIGHYSIYSLSISRLELPSSQLRFQPSKGLRLSISNLSLRV 80 (225)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCcCceecccccEEEEEEEEEEEEeccCCCCccccCCCCceEEEEcCceEEE
Confidence 799999999999999999999999999999999999988999999999999999999999999 8999999999999999
Q ss_pred EEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE-ecCCeEEEEEeeeeEEeceEEEEEECC-chhhHHHHHHHHH
Q 014521 118 GMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQALFEAFE 195 (423)
Q Consensus 118 ~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~Gg-~s~l~n~f~~~~~ 195 (423)
+|+|+|++. + |+++|.+++.++++++++.+.++ +.+|+|+++..+|++++++++++++|+ .+|+||.|.+.++
T Consensus 81 ~~~~~~~~~---~--i~~~G~~~~~v~~~~i~~~l~l~~~~~G~p~v~~~~C~~~i~~v~l~~~G~~~swl~n~f~~~i~ 155 (225)
T smart00328 81 SGDLKGSLN---F--IKLEGNFQLSVEGLSISADLRIESNPTGRPTVTLSSCSSSIGDVRLHFSGSVLGWLINLFRKFIE 155 (225)
T ss_pred EEEEEEEEE---E--EEeeeEEEEEEeeEEEEEEEEeccCCCCCeeEEeCCcccCcceEEEEEECCchHHHHHHHHHHHH
Confidence 999999985 3 79999999999999999999998 899999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccccccCCeeccceeeeeeeEEEEeccC
Q 014521 196 GKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISG 264 (423)
Q Consensus 196 ~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~ 264 (423)
+.||.+++++||++|++.+ +++|++|+++|+.+++|+...+||+++++|.+|++|++++++|+|++.++
T Consensus 156 ~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp~~~~vd~~~~idysl~~~p~~t~~~l~~~~kg~f~~~~~ 225 (225)
T smart00328 156 NTLRNVLEGQICPVIDSAVSNKMNDYLQTLPLSISLDSLIGVDYSLVSPPRVTAEFLDVRLKGKFFWKNH 225 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeecceeEEeeecccCCcccccccccccceeEEeCCC
Confidence 9999999999999999998 68999999999999999999999999999999999999999999999864
No 4
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=99.96 E-value=3.2e-28 Score=217.55 Aligned_cols=161 Identities=29% Similarity=0.544 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEEEEeCceEEEEEEEE
Q 014521 44 GLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVSGATADCGMNWE 122 (423)
Q Consensus 44 gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l~i~~~~i~l~g~~~ 122 (423)
||+|+++++.++|++++.+++|||++++.+.+++|++.|++++++|+++++|+.++++ |++|+.+...++++.++++|.
T Consensus 1 gL~y~~~~~~~~l~~~l~~~~ipdi~~~~~~~~~g~~~~~i~~i~I~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 80 (164)
T PF01273_consen 1 GLDYANQVGIQILQKELQKIQIPDISGSFSSPFIGSVKYNISNIKISNFRLPQSSLELSPDGGIVLSIIPASASLSGNWP 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----EEEEECETTTCCEEEEEEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhhcCCCCCcccccccccccceEEEEEeEEEEEeecCCccceECCCCceEEEEeeeEEEEEEEEe
Confidence 7999999999999999999999999999998888999999999999999999999999 999999999999999999999
Q ss_pred EEEcccccceeecceEEEEEEecEEEEEEEEEE-ecCCeEEEEEeeeeEEeceEEEEEECCchhhHHHHHHHHHHHHHHH
Q 014521 123 YSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSA 201 (423)
Q Consensus 123 ~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~Gg~s~l~n~f~~~~~~~I~~~ 201 (423)
++.. ++ .. +.++++.+++.++ +++|+|++++.+|++++++++++++||.+|+||.|.+.+++.|++.
T Consensus 81 ~~~~--~i---~~-------~~~v~i~~~i~l~~~~~G~~~v~~~~C~~~i~~v~i~~~gg~~~l~~~~~~~l~~~i~~~ 148 (164)
T PF01273_consen 81 YKGG--FI---KI-------AVGVDISVTIRLERDESGRPTVVVGSCSSDIGSVDIKLHGGASWLYNLFINFLSKSIRSL 148 (164)
T ss_dssp EEEC--CE---EE-------EEEEEEEEEEEEEEECCTEEEEEEEEEEEEEEEEEEEETTCGCCHHHHHHHHTHHHHHHH
T ss_pred cCCC--hh---hh-------eeeEEEEEEEEEEEcCCCCeEEEECCCccCcceEEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 9853 22 22 5578999999998 8889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014521 202 VESAVTKKISELITK 216 (423)
Q Consensus 202 l~~~iC~~i~~~i~~ 216 (423)
+++++|++|+..++.
T Consensus 149 l~~~iC~~i~~~l~~ 163 (164)
T PF01273_consen 149 LQKKICPVINSLLSN 163 (164)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhcchHhHHhhcC
Confidence 999999999887754
No 5
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=99.95 E-value=1.1e-27 Score=226.95 Aligned_cols=143 Identities=24% Similarity=0.363 Sum_probs=115.7
Q ss_pred ceeeeeeeEEEEeccCccccCCCCCCCCCccCCCCCCceEEEEEchhhhHHHHHHHHhcCeeeEEe--cccCCcc--ccc
Q 014521 249 SSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLN 324 (423)
Q Consensus 249 ~~i~~~l~G~~~~~~~~~~~P~~~~~~p~~~~~~~~~~Ml~l~lSey~~NS~l~~~~~ag~L~~~i--~~iP~~~--~Ln 324 (423)
+|+|+++||||++.+++.++|+ ++|....++++++|+++|+|||++||++|+||++|+|+++| +++|+.+ .||
T Consensus 1 ~~~e~~~kGe~~~~~~~~~~~~---~~~~~~~~~~~~~Ml~~~iSey~~NS~~~~~~~~g~l~~~it~~~~p~~~~~~l~ 77 (238)
T PF02886_consen 1 NYLETDHKGEFFPLNHHSPPPF---PPPVLPLPNSSSRMLYFWISEYVFNSLLYAAYQAGALDFTITPDMLPKSSPLLLT 77 (238)
T ss_dssp SEEEEEE--EEEETTSB---SS-----EE-GGGS-SSSSEEEEEEHHHHHHHHHHHHHTT-SEEEEEHHHCHCCHCHTTB
T ss_pred CccccccceeEEcCCCCCCCCC---CCCCcCCCCCCCcEEEEEEcHHHHHHHHHHHHHCCceEEEEecCccccccccccc
Confidence 5899999999999998877764 22322234688999999999999999999999999999999 6999985 789
Q ss_pred cchhhhhhhhHhhcCCCCCeEEEEEeCCCCEEEEEeCcEEEEEeeEEEEEEe-CCCceeeEEEEEEEeecc
Q 014521 325 TSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLVSLIE 394 (423)
Q Consensus 325 Ts~~g~liP~L~~~yPn~~~~l~i~~~~~P~v~i~~~~~~~~~~~~i~~~v~-~~~~~~~~~~l~~~~~~~ 394 (423)
|.|+|.++|||+++|||++++|+++++++|.++++++++++++.+++++++. ++++..++|+++++...+
T Consensus 78 T~~~g~~iP~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 148 (238)
T PF02886_consen 78 TSCIGDLIPELAKKYPNSPVELKIRSTKPPVVTISPGGVTVSLSGSVEVFVVPPNSSKVPLFSLNVDTSAD 148 (238)
T ss_dssp HCCCCTCCCCHHHCSCC-CEEEEEEESS--EEEEETTEEEEEEEEEEEEEEE-TTCGCEEEEEEEEEEEEE
T ss_pred cccHHhhhhhHHhcCCCCeEEEEEEeCCCCEEEEEcCcEEEEEEEEEEEEEecCCCceEEEEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999975 667788998876654443
No 6
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain
Probab=99.91 E-value=1.3e-23 Score=193.96 Aligned_cols=127 Identities=24% Similarity=0.386 Sum_probs=112.8
Q ss_pred CCceEEEEEchhhhHHHHHHHHhcCeeeEEe--cccCCcc--ccccchhhhhhhhHhhcCCCCCeEEEEEeCCCCEEEEE
Q 014521 284 PAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVS 359 (423)
Q Consensus 284 ~~~Ml~l~lSey~~NS~l~~~~~ag~L~~~i--~~iP~~~--~LnTs~~g~liP~L~~~yPn~~~~l~i~~~~~P~v~i~ 359 (423)
++||+|+|+|||++||++|+||++|+|+++| +++|+.+ +|||+|+|.++|||+++|||++|+|++++.++|.++++
T Consensus 1 ~~~Mv~i~lSey~~NS~~~~~~~ag~l~~~it~~~ip~~~~~~lnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~ 80 (202)
T smart00329 1 SDRMVYLALSEYFFNSLLFVYQQAGALKLTITDDMLPKESKFLLTTCCFGTLVPEVAEQYPDSTLQLEISVLSPPRVTLQ 80 (202)
T ss_pred CCeEEEEEecHHHHhHHHHHHHHCCcceEEeccccCCCcCccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEe
Confidence 4799999999999999999999999999999 7999985 99999999999999999999999999999999999999
Q ss_pred eCcEEEEEeeEEEEEEe-CCCceeeEEEEEEEeecc--------ccccccceeecceeee
Q 014521 360 EHDIGGTIDLDMTINVL-DSSEVIPVACISLVSLIE--------NLSAAHNIQPFTNFIH 410 (423)
Q Consensus 360 ~~~~~~~~~~~i~~~v~-~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~ 410 (423)
++++++.+.+.+++++. |++...++|+++++.+.. ++.|.+.+++|...++
T Consensus 81 ~~~~~v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~~l~g~l~l~~~~l~l~ 140 (202)
T smart00329 81 PGGATVYIHASVKVFAILPDSSRASLFLMSVDTNVSAKSSFKTKKLLGELKLDKLQVELK 140 (202)
T ss_pred cCCEEEEEeEEEEEEEeCCCCCcceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEee
Confidence 99999999999999976 556678999987655544 3467777777766654
No 7
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.91 E-value=1.9e-22 Score=186.96 Aligned_cols=201 Identities=21% Similarity=0.292 Sum_probs=184.3
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeec-----ceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEE
Q 014521 35 YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIP-----LIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLL 108 (423)
Q Consensus 35 Gi~vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~-----~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l 108 (423)
|+++|+++++|+|+++.+.+..+. +..++.|++++..+++ ..|...|..++++++.+..+..++++ | +|+.+
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~-~g~~~ 78 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGAL-LLTLTIPDIPKALKLKLSGIIPLGAKKYPDMNLQLKILSLSSPTLKLSP-KGLDL 78 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHh-hcCcccCCCCCccccccccccceEEEEeeCCceEEEEEecCCCeEEEec-CCEEE
Confidence 589999999999999999999988 7899999999988764 46999999999999999999999999 7 89999
Q ss_pred EEeCceEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEEecCCeEEEEEeeeeEEeceEEEEEECCchhhHH
Q 014521 109 AVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQ 188 (423)
Q Consensus 109 ~i~~~~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~~~~G~p~v~~~~C~~~i~~v~i~~~Gg~s~l~n 188 (423)
.+. +++.+++.|+++ ++|.+++.++ ++++++++++.++|+++++...|++++++++++++|
T Consensus 79 ~~~-~~i~~~~~~~~~----------~~~~~~~~l~-v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g------- 139 (208)
T cd00264 79 SQS-VSIELFVTWPAS----------DGGNPLFSLE-VEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGG------- 139 (208)
T ss_pred EEE-EEEEEEEEeccC----------CCCCEEEEEE-EEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEec-------
Confidence 999 999999998864 4677899997 999999999844499999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccccccCCeeccceeeeeeeEE
Q 014521 189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGL 258 (423)
Q Consensus 189 ~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idysl~~~P~it~~~i~~~l~G~ 258 (423)
|.+++.+.+++.+++.+|+.+...+ .++++.++.+|+ +|++....+||+++.+|.++++|++++++|+
T Consensus 140 -~~~~~~~~l~~~l~~~lc~~v~~~~n~~l~~~l~l~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 140 -FGNFIVSLLQKVLNTILCPVVLPALNSKLRSGLPLLPV-PPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcCCc-cCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 6677899999999999999999998 478999999999 9999999999999999999999999999873
No 8
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.88 E-value=4.7e-22 Score=183.27 Aligned_cols=123 Identities=34% Similarity=0.469 Sum_probs=107.0
Q ss_pred eEEEEEchhhhHHHHHHHHhcCeeeEEe--cccCCccccccchhhhhhhhHhhcCCCCCeEEEEEeCCCCEEEEEeCcEE
Q 014521 287 MIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIG 364 (423)
Q Consensus 287 Ml~l~lSey~~NS~l~~~~~ag~L~~~i--~~iP~~~~LnTs~~g~liP~L~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 364 (423)
|+|+|+|||++||++++||++|+|+++| +++|...+|||+.+|.++|||+++|||++++|++++++||.+++++++++
T Consensus 1 M~~~~~se~~~nSa~~~~~~ag~l~~~it~~~~p~~~~LnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~~~~~~ 80 (200)
T cd00026 1 MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQQLKISVSSPPHLVLSEGGAT 80 (200)
T ss_pred CEEEEEeHHHHhHHHHHHhhCCeEEEEEeCCcCCcccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEecCCEE
Confidence 8999999999999999999999999999 57885569999999999999999999999999999999999999999999
Q ss_pred EEEeeEEEEEEe-CCCceeeEEEEEEEeecc--------ccccccceeecceee
Q 014521 365 GTIDLDMTINVL-DSSEVIPVACISLVSLIE--------NLSAAHNIQPFTNFI 409 (423)
Q Consensus 365 ~~~~~~i~~~v~-~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~ 409 (423)
+++.+++++++. |++...|+|+++++++.+ ++.|.+++.+|...+
T Consensus 81 v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~kL~g~l~l~~~~~~l 134 (200)
T cd00026 81 LAQQLDVEIFATLPDSQLRPLFRLGVDTSSSAQLSVSKKKLIGSLNLDRFLLEL 134 (200)
T ss_pred EEEEEEEEEEEeCCCCccceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEE
Confidence 999999999976 455558999987765544 335556666655443
No 9
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=98.96 E-value=6e-09 Score=96.44 Aligned_cols=105 Identities=26% Similarity=0.367 Sum_probs=90.2
Q ss_pred eEEEEEchhhhHHHHHHHHhcCeeeEEe--cccCCccccccchhhhhhhhHhhcCCCCCeEEEEEeCCCCEEEEEeCcEE
Q 014521 287 MIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIG 364 (423)
Q Consensus 287 Ml~l~lSey~~NS~l~~~~~ag~L~~~i--~~iP~~~~LnTs~~g~liP~L~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 364 (423)
|+++++|||++|++.+.++++|.+...+ .++|+...+.++ .++|+++.+||+..++++.....+|.+.+.++++.
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~~g~~ 77 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGALLLTLTIPDIPKALKLKLS---GIIPLGAKKYPDMNLQLKILSLSSPTLKLSPKGLD 77 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHhhcCcccCCCCCccccccc---cccceEEEEeeCCceEEEEEecCCCeEEEecCCEE
Confidence 8999999999999999999999987777 577776544444 79999999999999999999999999999999999
Q ss_pred EEEeeEEEEEEe-CCC-ceeeEEEEEEEeecc
Q 014521 365 GTIDLDMTINVL-DSS-EVIPVACISLVSLIE 394 (423)
Q Consensus 365 ~~~~~~i~~~v~-~~~-~~~~~~~l~~~~~~~ 394 (423)
+.+.+++++++. ++. +..+.+.+++++.+.
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~l~v~~~~~ 109 (208)
T cd00264 78 LSQSVSIELFVTWPASDGGNPLFSLEVEISAS 109 (208)
T ss_pred EEEEEEEEEEEEeccCCCCCEEEEEEEEEEEE
Confidence 999999999966 444 677888877666555
No 10
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=98.39 E-value=4.3e-05 Score=72.72 Aligned_cols=183 Identities=13% Similarity=0.171 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCce--------eeeeecceeeEEEEEeeEEEEEEEe---CCceEEeCCCeeEEEE
Q 014521 42 KKGLDFFKNYLINKATSSIIPLELPDIE--------KSKKIPLIGKVHMALSNIIIYSVEI---DSSYVETGDPDLLLAV 110 (423)
Q Consensus 42 ~~gL~y~~~~~~~~l~~~l~~~~IPdi~--------g~~~~~~~G~v~~~ls~i~I~~~~~---p~~~v~lp~~gi~l~i 110 (423)
++-+..+.+...+.+.+-++.+.||.+. .....+ ..+++..++|+++++++- .+.++.+....+.+.+
T Consensus 40 ~~cl~~~~~~~~~~l~~Gip~l~ip~ldPl~i~~~~~~~~~~-~~~~~~~~~n~~i~Gls~~~v~~~~~d~~~~~~~~~~ 118 (248)
T PF06585_consen 40 NECLRESIENFRPYLAKGIPELGIPPLDPLYIPEIDINFNSG-PINLKANFKNVKIYGLSNFEVNKVSVDLKKLKLNFDL 118 (248)
T ss_dssp HHHHHHHHHHHHHHHTCEBGGGTBEETTTEEEEEEEEEE-TT-CTTEEEEEEEEEEESGGG-EEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCcccCCCCCCCEEecceEEEeecC-CceEEEEEEeEEEeccCCcEEEEEEEcCCCcEEEEEE
Confidence 3344445555666666666655555433 222111 123566778888875432 3333333344566666
Q ss_pred eCceEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE--ecC--CeEEEEEeeeeEEeceEEEEEECC---c
Q 014521 111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK--EQG--GIVKVILVDCGSHVRDISIKVDGG---A 183 (423)
Q Consensus 111 ~~~~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~--~~~--G~p~v~~~~C~~~i~~v~i~~~Gg---~ 183 (423)
.--.+.+.|+|+..-....+| |+-+|.+++.+.++++...+... ..+ .+++++..++..+++++++++.+- .
T Consensus 119 ~~P~l~i~g~Y~~~g~i~~~p-i~g~G~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~~~~~~~~~~nl~~g~ 197 (248)
T PF06585_consen 119 TFPKLSIKGKYEIDGKILLLP-ISGKGDFNITLENVRATGTIKGEVYKKNGKTYLRITNFKIDFDLGNVKFDLENLFNGN 197 (248)
T ss_dssp EE-EEEEEEEEEEEEEECCEC-CCTEEEEEEEEEEEEEEEEEEEEEEEETS-EEEEEEEEEEEEEECEEEEEESHHHHHH
T ss_pred EEEEEEEEEEEEEeeeeeeeE-EeccceEEEEeeeEEEEEEEEEEEeecCCccEEEEEEEEEEEEeceEEEEeeccCCCC
Confidence 644778888888875533367 88999999999999998888775 333 467777777777889999998742 2
Q ss_pred hhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHhcCCC
Q 014521 184 SWLYQALFEAFEGK---IKSAVESAVTKKISELI-TKLDSIFQSLPK 226 (423)
Q Consensus 184 s~l~n~f~~~~~~~---I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~ 226 (423)
..+-+.+.+++... +-+.++..+-+.+.+.+ +.+|+.|..+|.
T Consensus 198 ~~l~~~~n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l~~~p~ 244 (248)
T PF06585_consen 198 KELSDFINKFINENWPELLNEVKPDIEEILSKIITDIINKILSKVPY 244 (248)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 22222233333332 22333344444444444 557889988885
No 11
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=98.31 E-value=0.00044 Score=64.88 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCcee----eeeeccee----eEEEEEeeEEEEEEEeCCc-eEEe-C-CCeeEEEE
Q 014521 42 KKGLDFFKNYLINKATSSIIPLELPDIEK----SKKIPLIG----KVHMALSNIIIYSVEIDSS-YVET-G-DPDLLLAV 110 (423)
Q Consensus 42 ~~gL~y~~~~~~~~l~~~l~~~~IPdi~g----~~~~~~~G----~v~~~ls~i~I~~~~~p~~-~v~l-p-~~gi~l~i 110 (423)
.+-+.-+.+...+.+.+.++.+.||.+.- +..+. .| .++..++|+++..++--.. +++. + ...+.+.+
T Consensus 16 ~~Ci~~~~~~~~~~~~~G~Pe~gip~ldPl~i~~~~i~-~~~~~~~~~~~~~n~~i~Gl~~~~i~~~~~~~~~~~~~~~~ 94 (225)
T smart00700 16 SECLRDAIEALLPQLKNGIPEYGIPPLDPLEIDDLKIS-IGSGVIGLRLTFKNVKIYGLSNFEITKFKMDLKDKKIELKI 94 (225)
T ss_pred hHHHHHHHHHHHHHHhcCCCccCCCCcCCEEeeeEEEe-cCCCceEEEEEEEEeEEEcCcceEEEEEEecCCCcEEEEEE
Confidence 45555566666677777777666666441 11111 12 3566778888887643221 2344 3 34567777
Q ss_pred eCceEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE-ecCC--eEEEEEeeeeEEeceEEEEEECCc----
Q 014521 111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQGG--IVKVILVDCGSHVRDISIKVDGGA---- 183 (423)
Q Consensus 111 ~~~~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~~~G--~p~v~~~~C~~~i~~v~i~~~Gg~---- 183 (423)
.--.+.+.|+|+.+-+...+| |+-+|.+++.++++++...+... ..+| ++++...++...++++++++++=.
T Consensus 95 ~~p~l~~~g~Y~~~g~ll~lp-i~g~G~~~~~l~n~~~~~~~~~~~~~~g~~yl~i~~~~~~~~~~~~~~~~~NLfngn~ 173 (225)
T smart00700 95 EFPKLNVKGDYKLDGRLLGLP-LNGKGDANFTLENVKIRGTLKLKLGPDGKTYLKIKSLKVNFEVGDVKSHLDNLFNGNK 173 (225)
T ss_pred ECCcEEEEeeeEeeeEEEEEE-ecCCCcEEEEEEeeEEEEEEEEEEccCCeEEEEEEEEEEEEEeceEEEEeeccCCCCH
Confidence 765688889988875443466 88999999999999888887775 3356 788888999999999999987532
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCC
Q 014521 184 --SWLYQALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPK 226 (423)
Q Consensus 184 --s~l~n~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~ 226 (423)
+-..|-|.+.--..+-+.++..+.+++...+ ..+|+.+..+|.
T Consensus 174 ~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~~~~~vp~ 219 (225)
T smart00700 174 DLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPI 219 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 2234444444555566666667777776666 678899998885
No 12
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=92.28 E-value=0.47 Score=42.14 Aligned_cols=56 Identities=18% Similarity=0.366 Sum_probs=48.4
Q ss_pred EEeceEEEEEECC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014521 170 SHVRDISIKVDGG-ASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLP 225 (423)
Q Consensus 170 ~~i~~v~i~~~Gg-~s~l~n~f~~~~~~~I~~~l~~~iC~~i~~~i~~ln~~L~tlp 225 (423)
++|.+++|++.-. ..+|+.+|.+++-+.||..|++.|-.+|+..+++++..|-.+-
T Consensus 2 V~i~~L~ikikkSkHklL~~~fKPll~~~vR~alqKalE~qIr~~~~~~D~~l~~i~ 58 (164)
T PF14613_consen 2 VDIDNLKIKIKKSKHKLLFKLFKPLLLKVVRPALQKALEKQIRDAFEKLDRFLYDIH 58 (164)
T ss_pred cccccceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4678899999966 7889999999999999999999999999999888877765543
No 13
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=75.05 E-value=95 Score=32.00 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=46.1
Q ss_pred CCeEEEEEeeeeEEeceEEEEEECCchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 014521 158 GGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAV----TKKISELITKLDSIFQS 223 (423)
Q Consensus 158 ~G~p~v~~~~C~~~i~~v~i~~~Gg~s~l~n~f~~~~~~~I~~~l~~~i----C~~i~~~i~~ln~~L~t 223 (423)
.|+|......=...+.|+|..++... ++.+.-.-.+++.|++.|+++. -+.+.+.-+.+++.|..
T Consensus 316 ~G~P~yD~~~~~l~l~dld~~~~t~~-~l~~~a~wl~~~~i~~~i~~~~~~~l~~~l~~~~~~i~~~l~~ 384 (427)
T PF14356_consen 316 SGRPVYDPATQTLRLEDLDFDLDTKN-FLLKTAAWLLHGRIRKAIEEKLVFDLGPQLEEAKKKINAALAN 384 (427)
T ss_pred EEEEEECCCCCEEEEEeeEEEecccc-hHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 47788888888889999999888653 5666666667777777777775 44444444567777776
No 14
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=72.96 E-value=26 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcee
Q 014521 47 FFKNYLINKATSSIIPLELPDIEK 70 (423)
Q Consensus 47 y~~~~~~~~l~~~l~~~~IPdi~g 70 (423)
.+++...+.|++++++++.|.+-+
T Consensus 16 ~~~~~i~~~L~~kL~~i~~P~fl~ 39 (91)
T PF10296_consen 16 AFRDKIKEKLQKKLNKIKLPSFLD 39 (91)
T ss_pred HHHHHHHHHHHHHHccccCCCccC
Confidence 466778889999999998777753
No 15
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=44.26 E-value=98 Score=24.63 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHH
Q 014521 181 GGASWLYQALFEAFEGKIKSAVESAV 206 (423)
Q Consensus 181 Gg~s~l~n~f~~~~~~~I~~~l~~~i 206 (423)
-..+|+...|.+.+++.|++.|.+.+
T Consensus 65 v~Lg~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 65 AELGMLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred EEhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34579999988888888888887654
No 16
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=34.86 E-value=74 Score=25.05 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 014521 183 ASWLYQALFEAFEGKIKSAVESA 205 (423)
Q Consensus 183 ~s~l~n~f~~~~~~~I~~~l~~~ 205 (423)
.+|+...|.+.+++.|++.+.+.
T Consensus 64 Lg~Ll~~f~~~Ie~~I~~~Ld~~ 86 (87)
T PF09650_consen 64 LGFLLSPFKGKIEQEIEKNLDKL 86 (87)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Confidence 46999998888888888877664
No 17
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.15 E-value=42 Score=35.90 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=7.4
Q ss_pred ceEEEEEEecEEEEE
Q 014521 136 SGAATVLVEGLEVGL 150 (423)
Q Consensus 136 sG~~~~~v~~~~i~~ 150 (423)
+|++++.+.++++.+
T Consensus 452 ~~~~~~~~~~~~l~~ 466 (555)
T TIGR03545 452 EGNIDNKYTQVDLSV 466 (555)
T ss_pred EEEeeecccceeEee
Confidence 455555555444444
No 18
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=31.37 E-value=47 Score=25.55 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhccccccccCC
Q 014521 12 ILFMFLSLLLIPTSAHVQVNE 32 (423)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~ 32 (423)
+.+.+|+|+++ |.|..+|++
T Consensus 10 ivlGLlvLIlt-C~Ad~~p~~ 29 (88)
T PF15144_consen 10 IVLGLLVLILT-CHADDKPND 29 (88)
T ss_pred HHHHHHHHHhh-hccCCCCCC
Confidence 45566677776 888766643
No 19
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=29.09 E-value=4.7e+02 Score=24.23 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=19.6
Q ss_pred EEEechhHHHHHHHHHHHHHHhhcCCCCCCCcee
Q 014521 37 SAVISKKGLDFFKNYLINKATSSIIPLELPDIEK 70 (423)
Q Consensus 37 ~vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g 70 (423)
+++.++.-++.--....+.+.+.+.+ -+|++.-
T Consensus 31 ~C~~~~~~~~~cl~~~~~~~~~~l~~-Gip~l~i 63 (248)
T PF06585_consen 31 PCKRSDPNLNECLRESIENFRPYLAK-GIPELGI 63 (248)
T ss_dssp -BBTT----HHHHHHHHHHHHHHHTC-EBGGGTB
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhcC-CCcccCC
Confidence 44455444777777777888888876 6887643
No 20
>PF09256 BaffR-Tall_bind: BAFF-R, TALL-1 binding; InterPro: IPR015336 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. The domain represented by this entry is predominantly found in the tumour necrosis factor receptor superfamily member 13c, BAFF-R and is required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 1P0T_c 2HFG_R 1OSX_A 1OQE_N.
Probab=25.76 E-value=33 Score=21.37 Aligned_cols=11 Identities=64% Similarity=1.392 Sum_probs=8.0
Q ss_pred eeccce--eeeec
Q 014521 412 LFDPLT--CVYCA 422 (423)
Q Consensus 412 ~~~~~~--~~~~~ 422 (423)
-||||+ ||.|.
T Consensus 9 CFDpLvR~CV~C~ 21 (31)
T PF09256_consen 9 CFDPLVRHCVACE 21 (31)
T ss_dssp EEETTTTEEEEGG
T ss_pred hcCHhhhcceeee
Confidence 378885 88883
No 21
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=25.24 E-value=1.1e+02 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=11.4
Q ss_pred HHHHHHHhhhccccccccCCCceEEEEec
Q 014521 13 LFMFLSLLLIPTSAHVQVNEGGYISAVIS 41 (423)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~pGi~vrit 41 (423)
.|.+++|.+++..++ .|| +|-|+
T Consensus 7 a~~l~lLal~~a~~~-----~pG-~ViIN 29 (36)
T PF08194_consen 7 AFALLLLALAAAVPA-----TPG-NVIIN 29 (36)
T ss_pred HHHHHHHHHHhcccC-----CCC-eEEEC
Confidence 355555554432323 377 55555
No 22
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=20.12 E-value=1e+03 Score=24.89 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=38.8
Q ss_pred EEechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEee---EEEEEEEeCCceEEeCCCeeEEEEeCce
Q 014521 38 AVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSN---IIIYSVEIDSSYVETGDPDLLLAVSGAT 114 (423)
Q Consensus 38 vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~---i~I~~~~~p~~~v~lp~~gi~l~i~~~~ 114 (423)
+-|+++. ++++..+|.|...+++.+.-|++-..... ...++| |+..+++.......+--+++.+++.+-.
T Consensus 237 flIS~~~--Flk~~llP~L~~~f~~~t~~dF~v~~~~~-----~l~i~n~~~i~~~~i~~~~~~y~P~i~~f~l~l~~~~ 309 (456)
T PF06597_consen 237 FLISEEL--FLKHVLLPALPSAFKGATADDFEVSNTST-----TLVITNNKKINLDDIKVGGITYHPYINSFSLSLQGNY 309 (456)
T ss_pred EEecHHH--HHHHHHhhhhHhhcccCCccceEEecccc-----eeEEccCceeeccccccCCeeeeeEecceEEEEeCCE
Confidence 4566664 57888899998888888777766433210 123333 4444444444444431244555555543
Q ss_pred E
Q 014521 115 A 115 (423)
Q Consensus 115 i 115 (423)
+
T Consensus 310 i 310 (456)
T PF06597_consen 310 I 310 (456)
T ss_pred E
Confidence 3
No 23
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=20.03 E-value=1.7e+02 Score=27.39 Aligned_cols=19 Identities=21% Similarity=0.662 Sum_probs=15.3
Q ss_pred ccceeecceeeeeeeccce
Q 014521 399 AHNIQPFTNFIHFLFDPLT 417 (423)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~ 417 (423)
.|-.-+||++||+|-||..
T Consensus 85 ~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 85 VLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred EEEEEeCCceEEEccCCCc
Confidence 3566789999999999953
Done!