BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014522
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 40/317 (12%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
V++G G SGL+ LR G+ +V+L+ WQ + L+L P + +P
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPM 65
Query: 85 PEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLW-RVKTASSAGSTKT 143
P YP + + + YL Y +K+ + ++ R S R++ + G
Sbjct: 66 PASQGPYPARAEVLAYLAQYEQKYAL-----PVLRPIRVQRVSHFGERLRVVARDGR--- 117
Query: 144 EFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSG 203
+++ R ++ ATG E P+ +GL F G +H+ Y + + G +V ++G GNSG
Sbjct: 118 --QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSG 175
Query: 204 MELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWF 263
++ ++S A + + + L ++ G+ FE AT K
Sbjct: 176 AQILAEVST-VAETTWITQHEPAFLADDVDGRVLFERATERWK----------------- 217
Query: 264 ILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPGIKRISCGQAELI 323
+ G + P + P + + PVLD A G + VP R S +
Sbjct: 218 ----AQQEG-REPDLPPGGFGDIVMVPPVLDARA-----RGVLAAVPPPARFSPTGMQWA 267
Query: 324 NGEKLDIDAIVLATGYR 340
+G + DA++ TG+R
Sbjct: 268 DGTERAFDAVIWCTGFR 284
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
V+VGAG +GL R QG+ E A + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 85 PEDF-PE----------YPTKRQFIQYLESYAEKFEI--NPRFNECVQSARYDETSGLWR 131
F PE Y T+ + + YLE A++F++ + RF+ V SA DE W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDY-KSGEKYK 190
V+T E R+LVVA G + P +GL F G+++H + G +
Sbjct: 138 VRTDRGD-------EVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFT 190
Query: 191 GKKVLVVGCGNSGME 205
GK+V V+G G+SG++
Sbjct: 191 GKRVGVIGTGSSGIQ 205
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
V+VGAG +GL R QG+ E A + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 85 PEDF-PE----------YPTKRQFIQYLESYAEKFEI--NPRFNECVQSARYDETSGLWR 131
F PE Y T+ + + YLE A++F++ + RF+ V SA DE W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDY-KSGEKYK 190
V+T E R+LVVA G + P +GL F G+++H + G +
Sbjct: 138 VRTDRGD-------EVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFT 190
Query: 191 GKKVLVVGCGNSGME 205
GK+V V+G G+SG++
Sbjct: 191 GKRVGVIGTGSSGIQ 205
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
V+VGAG +GL R QG+ E A + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 85 PEDF-PE----------YPTKRQFIQYLESYAEKFEI--NPRFNECVQSARYDETSGLWR 131
F PE Y T+ + + YLE A++F++ + RF+ V SA DE W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDY-KSGEKYK 190
V+T E R+LVVA G + P +GL F G+++H + G +
Sbjct: 138 VRTDRGD-------EVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFT 190
Query: 191 GKKVLVVGCGNSGME 205
GK+V V+G G+SG++
Sbjct: 191 GKRVGVIGTGSSGIQ 205
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 26/198 (13%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQ------ 78
V++GAG +G+ A + G+ + +E E + W Y L
Sbjct: 13 VVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKG 72
Query: 79 -LPKLQFPEDFPEYPTKRQFIQYLESYAEKFEINP--RFNECVQSARYDETSGLWRVKTA 135
+P+ ++ E+F P + ++Y+ A+ ++ RFN V +ARY E LW V
Sbjct: 73 IIPEWEWSENFASQP---EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEV--- 126
Query: 136 SSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKS-------GEK 188
+ E CR+L+ ATG + MPDI+G+ F GE H+ + + G
Sbjct: 127 ----TLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVD 182
Query: 189 YKGKKVLVVGCGNSGMEL 206
+ GK+V V+G G +G+++
Sbjct: 183 FTGKRVGVIGTGATGVQI 200
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
++VGAG SGL LR+ G ++E A + +W Y P C + +++
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 85 PEDFPE-----------YPTKRQFIQYLESYAEKFEINP--RFNECVQSARYDETSGLWR 131
F E Y ++ + ++Y+ A+KF++ F+ V +A +DE + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGE-KYK 190
V T R+L++A+G+ + +P+ GL DF G + H ++ +
Sbjct: 133 VDTNHGD-------RIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFS 185
Query: 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLP 229
G++V V+G G+SG+++S ++ A + R+ +P
Sbjct: 186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
++VGAG SGL LR+ G ++E A + +W Y P C + +++
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 85 PEDFPE-----------YPTKRQFIQYLESYAEKFEINP--RFNECVQSARYDETSGLWR 131
F E Y ++ + ++Y+ A+KF++ F+ V +A +DE + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGE-KYK 190
V T R+L++A+G+ + +P+ GL DF G + H ++ +
Sbjct: 133 VDTNHGD-------RIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFS 185
Query: 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLP 229
G++V V+G G+SG+++S ++ A + R+ +P
Sbjct: 186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
++VGAG SGL LR+ G ++E A + +W Y P C + +++
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCDIESIEY 72
Query: 85 PEDFPE-----------YPTKRQFIQYLESYAEKFEINP--RFNECVQSARYDETSGLWR 131
F E Y ++ + ++Y+ A+KF++ F+ V +A +DE + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGE-KYK 190
V T R+L++A+G+ + +P+ GL DF G + H ++ +
Sbjct: 133 VDTNHGD-------RIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFS 185
Query: 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLP 229
G++V V+G G+SG+++S ++ A + R+ +P
Sbjct: 186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
++VGAG SGL LR+ G ++E A + +W Y P C + +++
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-------PGARCAIESIEY 72
Query: 85 PEDFPE-----------YPTKRQFIQYLESYAEKFEINP--RFNECVQSARYDETSGLWR 131
F E Y ++ + ++Y+ A+KF++ F+ V +A +DE + W
Sbjct: 73 CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWT 132
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGE-KYK 190
V T R+L++A+G+ + +P+ GL DF G + H ++ +
Sbjct: 133 VDTNHGD-------RIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFS 185
Query: 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLP 229
G++V V+G G+SG+++S ++ A + R+ +P
Sbjct: 186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 25 VIVGAGPSGLATAACLRDQ-GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQ 83
V++GAG G+ L + G+ V ++A+ W ++R L L +
Sbjct: 12 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY---WNRYPGALSDTESHLYRFS 68
Query: 84 FPEDFPE-------YPTKRQFIQYLESYAEKFEI--NPRFNECVQSARYDETSGLWRVKT 134
F D + Y T+ + ++YLE ++F++ + +F V SA Y + LW V T
Sbjct: 69 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 128
Query: 135 ASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKV 194
Y +++V A G + P++ GL F GE IH + G+ G++V
Sbjct: 129 DHGE-------VYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRV 181
Query: 195 LVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLP 229
V+G G++G ++ L+ ++ VR+ + +P
Sbjct: 182 GVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVP 216
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 25 VIVGAGPSGLATAACLRDQ-GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQ 83
V++GAG G+ L + G+ V ++A+ W ++R L L +
Sbjct: 45 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY---WNRYPGALSDTESHLYRFS 101
Query: 84 FPEDFPE-------YPTKRQFIQYLESYAEKFEI--NPRFNECVQSARYDETSGLWRVKT 134
F D + Y T+ + ++YLE ++F++ + +F V SA Y + LW V T
Sbjct: 102 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 161
Query: 135 ASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKV 194
Y +++V A G + P++ GL F GE IH + G+ G++V
Sbjct: 162 DHGE-------VYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRV 214
Query: 195 LVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLP 229
V+G G++G ++ L+ ++ VR+ + +P
Sbjct: 215 GVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVP 249
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 33/211 (15%)
Query: 25 VIVGAGPSGLAT-----AACLRDQGVP-FVMLERAECIASLW---------------QKR 63
I+GAGPSG+A +A + +P V E+ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 64 TYDRLNLHLPKQFCQLPKLQFPEDF----PEYPTKRQFIQYLESYAEKFEINP--RFNEC 117
Y L + PK+ + F E F YP + Y++ EK + RFN
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 118 VQSARYDETSGLWRVKTASSAGST--KTEFEYICRWLVVATGENAERVMPDIEGLADFGG 175
V+ ++E S + V T EF+Y+ V TG + +P+ EG FGG
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYV----VCCTGHFSTPYVPEFEGFEKFGG 181
Query: 176 EVIHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
++HA D++ ++K K VL+VG +S ++
Sbjct: 182 RILHAHDFRDALEFKDKTVLLVGSSSSAEDI 212
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 310 PGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHG--W 367
P + R+ A +G +DAI+L TGY + P + + N G W
Sbjct: 245 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVW 304
Query: 368 KGNAGLYAVGFTRRGLSGASSDA 390
+ N + +G + S DA
Sbjct: 305 EDNPKFFYIGMQDQWYSFNMFDA 327
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 33/211 (15%)
Query: 25 VIVGAGPSGLAT-----AACLRDQGVP-FVMLERAECIASLW---------------QKR 63
I+GAGPSG+A +A + +P V E+ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 64 TYDRLNLHLPKQFCQLPKLQFPEDF----PEYPTKRQFIQYLESYAEKFEINP--RFNEC 117
Y L + PK+ + F E F YP + Y++ EK + RFN
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 118 VQSARYDETSGLWRVKTASSAGST--KTEFEYICRWLVVATGENAERVMPDIEGLADFGG 175
V+ ++E S + V T EF+Y+ V TG + +P+ EG FGG
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYV----VCCTGHFSTPYVPEFEGFEKFGG 181
Query: 176 EVIHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
++HA D++ ++K K VL+VG S ++
Sbjct: 182 RILHAHDFRDALEFKDKTVLLVGSSYSAEDI 212
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 310 PGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHG--W 367
P + R+ A +G +DAI+L TGY + P + + N G W
Sbjct: 245 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVW 304
Query: 368 KGNAGLYAVGFTRRGLSGASSDAMR-IAQDI 397
+ N + +G + S DA A+D+
Sbjct: 305 EDNPKFFYIGMQDQWYSFNMFDAQAWYARDV 335
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 29/209 (13%)
Query: 25 VIVGAGPSGLAT-----AACLRDQGVP-FVMLERAECIASLW---------------QKR 63
I+GAGPSG+A +A + +P V E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 64 TYDRLNLHLPKQFCQLPKLQFPEDF----PEYPTKRQFIQYLESYAEKFEINP--RFNEC 117
Y L + PK+ + F E F YP + Y++ EK + RFN
Sbjct: 71 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 118 VQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177
V+ ++E S + V +T T + ++V TG + +P+ EG FGG +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDH--TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 178 IHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
+HA D++ ++K K VL+VG S ++
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 310 PGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHG--W 367
P + R+ A +G +DAI+L TGY + P + + N G W
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVW 309
Query: 368 KGNAGLYAVGFTRRGLSGASSDAMR-IAQDI 397
+ N + +G + S DA A+D+
Sbjct: 310 EDNPKFFYIGMQDQWYSFNMFDAQAWYARDV 340
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 25 VIVGAGPSGLAT-----AACLRDQGVP-FVMLERAECIASLW---------------QKR 63
I+GAGPSG A +A + +P V E+ W
Sbjct: 6 AILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 64 TYDRLNLHLPKQFCQLPKLQFPEDF----PEYPTKRQFIQYLESYAEKFEINP--RFNEC 117
Y L + PK+ + F E F YP + Y++ EK + RFN
Sbjct: 66 XYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 118 VQSARYDETSGLWRVKTASSAGST--KTEFEYICRWLVVATGENAERVMPDIEGLADFGG 175
V+ ++E S + V T EF+Y+ V TG + +P+ EG FGG
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYV----VCCTGHFSTPYVPEFEGFEKFGG 181
Query: 176 EVIHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
++HA D++ ++K K VL+VG S ++
Sbjct: 182 RILHAHDFRDALEFKDKTVLLVGSSYSAEDI 212
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 310 PGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHG--W 367
P + R+ A +G +DAI+L TGY + P + + N G W
Sbjct: 245 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVW 304
Query: 368 KGNAGLYAVGFTRRGLSGASSDAMR-IAQDI 397
+ N + +G + S DA A+D+
Sbjct: 305 EDNPKFFYIGXQDQWYSFNXFDAQAWYARDV 335
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 25 VIVGAGPSGLAT-----AACLRDQGVP-FVMLERAECIASLW---------------QKR 63
I+GAGPSG+A +A + +P V E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 64 TYDRLNLHLPKQFCQLPKLQFPEDF----PEYPTKRQFIQYLESYAEKFEINP--RFNEC 117
Y L PK+ + F E F YP + Y++ EK + RFN
Sbjct: 71 MYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 118 VQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177
V+ ++E S + V +T T + ++V TG + +P+ EG FGG +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDH--TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 178 IHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
+HA D++ ++K K VL+VG S ++
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 310 PGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHG--W 367
P + R+ A +G +DAI+L TGY + P + + N G W
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVW 309
Query: 368 KGNAGLYAVGFTRRGLSGASSDA 390
+ N + +G + S DA
Sbjct: 310 EDNPKFFYIGMQDQWYSFNMFDA 332
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 25 VIVGAGPSGLAT-----AACLRDQGVP-FVMLERAECIASLW---------------QKR 63
I+GAGPSG+A +A + +P V E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 64 TYDRLNLHLPKQFCQLPKLQFPEDF----PEYPTKRQFIQYLESYAEKFEINP--RFNEC 117
Y L PK+ + F E F YP + Y++ EK + RFN
Sbjct: 71 MYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 118 VQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177
V+ ++E S + V +T T + ++V TG + +P+ EG FGG +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDH--TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 178 IHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
+HA D++ ++K K VL+VG S ++
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 310 PGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHG--W 367
P + R+ A +G +DAI+L TGY + P + + N G W
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVW 309
Query: 368 KGNAGLYAVGFTRRGLSGASSDAMR-IAQDI 397
+ N + +G + S DA A+D+
Sbjct: 310 EDNPKFFYIGMQDQWYSFNMFDAQAWYARDV 340
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 25 VIVGAGPSGLAT-----AACLRDQGVP-FVMLERAECIASLW---------------QKR 63
I+GAGPSG+A +A + +P V E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 64 TYDRLNLHLPKQFCQLPKLQFPEDF----PEYPTKRQFIQYLESYAEKFEINP--RFNEC 117
Y L PK+ + F E F YP + Y++ EK + RFN
Sbjct: 71 MYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 118 VQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177
V+ ++E S + V +T T + ++V TG + +P+ EG FGG +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDH--TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 178 IHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
+HA D++ ++K K VL+VG S ++
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 310 PGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHG--W 367
P + R+ A +G +DAI+L TGY + P + + N G W
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVW 309
Query: 368 KGNAGLYAVGFTRRGLSGASSDAMR-IAQDI 397
+ N + +G + S DA A+D+
Sbjct: 310 EDNPKFFYIGMQDQWYSFNMFDAQAWYARDV 340
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 28/199 (14%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASL-WQKRTYDRLNLHLPKQFCQLPKLQ 83
VI+G GP+GL A + ++LE+ + W + +
Sbjct: 12 VIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVEN----------------- 54
Query: 84 FPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKT 143
FP FPE + Q + AEKF +E VQ ++D TS + G
Sbjct: 55 FP-GFPEPIAGMELAQRMHQQAEKFGAKVEMDE-VQGVQHDATSHPYPFTVRGYNG---- 108
Query: 144 EFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSG 203
EY + +++ATG + ++ I G +F G+ + C G YKGKKV+V+G G++
Sbjct: 109 --EYRAKAVILATGADPRKL--GIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAA 164
Query: 204 MELSLDLSNHNASPSMVVR 222
+E + L+ +++ R
Sbjct: 165 VEEGMFLTKFADEVTVIHR 183
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 34/183 (18%)
Query: 78 QLPKLQFPEDFPEYP---TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKT 134
QL E++P P T ++ + +A KFE F+ + D + +R+
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHI---NKVDLQNRPFRLNG 98
Query: 135 ASSAGSTKTEFEYICRWLVVATGENAERV-MPDIEGLADFGGEVIHACDYKSGEKYKGKK 193
+ EY C L++ATG +A + +P E F G + AC G Y+ +K
Sbjct: 99 DNG--------EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATSDGFFYRNQK 147
Query: 194 VLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253
V V+G GN+ +E +L LSN + S VH++ R + F +++K L+
Sbjct: 148 VAVIGGGNTAVEEALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLM 191
Query: 254 DKI 256
DK+
Sbjct: 192 DKV 194
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 34/183 (18%)
Query: 78 QLPKLQFPEDFPEYP---TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKT 134
QL E++P P T ++ + +A KFE F+ + D + +R+
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHI---NKVDLQNRPFRLNG 98
Query: 135 ASSAGSTKTEFEYICRWLVVATGENAERV-MPDIEGLADFGGEVIHACDYKSGEKYKGKK 193
+ EY C L++ATG +A + +P E F G + AC G Y+ +K
Sbjct: 99 DNG--------EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATSDGFFYRNQK 147
Query: 194 VLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253
V V+G GN+ +E +L LSN + S VH++ R + F +++K L+
Sbjct: 148 VAVIGGGNTAVEEALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLM 191
Query: 254 DKI 256
DK+
Sbjct: 192 DKV 194
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 34/183 (18%)
Query: 78 QLPKLQFPEDFPEYP---TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKT 134
QL E++P P T ++ + +A KFE F+ + D + +R+
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHI---NKVDLQNRPFRLNG 98
Query: 135 ASSAGSTKTEFEYICRWLVVATGENAERV-MPDIEGLADFGGEVIHACDYKSGEKYKGKK 193
+ EY C L++ATG +A + +P E F G + AC G Y+ +K
Sbjct: 99 DNG--------EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATCDGFFYRNQK 147
Query: 194 VLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253
V V+G GN+ +E +L LSN + S VH++ R + F +++K L+
Sbjct: 148 VAVIGGGNTAVEEALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLM 191
Query: 254 DKI 256
DK+
Sbjct: 192 DKV 194
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 34/183 (18%)
Query: 78 QLPKLQFPEDFPEYP---TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKT 134
QL E++P P T ++ + +A KFE F+ + D + +R+
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHI---NKVDLQNRPFRLNG 98
Query: 135 ASSAGSTKTEFEYICRWLVVATGENAERV-MPDIEGLADFGGEVIHACDYKSGEKYKGKK 193
+ EY C L++ATG +A + +P E F G + AC G Y+ +K
Sbjct: 99 DNG--------EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATCDGFFYRNQK 147
Query: 194 VLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253
V V+G GN+ +E +L LSN + S VH++ R + F +++K L+
Sbjct: 148 VAVIGGGNTAVEEALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLM 191
Query: 254 DKI 256
DK+
Sbjct: 192 DKV 194
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 72 LPKQFCQLPKLQFPED-------FPEYPTKRQFIQYLESYAEKFEINPRFNECV-QSARY 123
+P+ QL L +PE FPE P ++ L + AE++ + NE V + +
Sbjct: 46 MPQLGGQLAAL-YPEKHIYDVAGFPEVPAI-DLVESLWAQAERYNPDVVLNETVTKYTKL 103
Query: 124 DETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA--ERVMPDIEGLADFGGEVIHAC 181
D+ + R T + Y R +++A G A R +P + + G ++
Sbjct: 104 DDGTFETRTNTGNV---------YRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA 154
Query: 182 DYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVR 222
KS E +KGK+V++VG G+S ++ ++ L + AS ++V R
Sbjct: 155 -VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHR 194
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 78 QLPKLQFPEDFPEYP---TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKT 134
QL E++P P T ++ + +A KFE F+ + D + +R+
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHI---NKVDLQNRPFRLNG 98
Query: 135 ASSAGSTKTEFEYICRWLVVATGENAERV-MPDIEGLADFGGEVIHACDYKSGEKYKGKK 193
+ EY C L++ATG +A + +P E G CD G Y+ +K
Sbjct: 99 DNG--------EYTCDALIIATGASARYLGLPSEEAFKGRGVSASATCD---GFFYRNQK 147
Query: 194 VLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253
V V+G GN+ +E +L LSN + S VH++ R + F +++K L+
Sbjct: 148 VAVIGGGNTAVEEALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLM 191
Query: 254 DKI 256
DK+
Sbjct: 192 DKV 194
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 128 GLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGE 187
GL +++TAS A R ++VATG + ++ G + + + C + G
Sbjct: 90 GLHQIETASGA-------VLKARSIIVATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGP 140
Query: 188 KYKGKKVLVVGCGNSGMELSLDLS 211
+KGK+V V+G GNSG+E ++DL+
Sbjct: 141 LFKGKRVAVIGGGNSGVEAAIDLA 164
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 48/228 (21%)
Query: 26 IVGAGPSGLATA-ACLRDQGVPFVML-ERAECIASLWQKRT------------------- 64
I+GAGPSGL TA A L ++ V L ER +W +
Sbjct: 11 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 70
Query: 65 --------------YDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQYLESYAEKFEI 110
Y L + P + F ++P + +Y YA+ +
Sbjct: 71 IVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP--L 128
Query: 111 NPRFNECVQSARYDETSGLWRVK-TASSAGS--TKTEFEYICRWLVVATGENAERVMPDI 167
P ++ G W V + AGS +K F+ + + G +P+I
Sbjct: 129 LPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVS----ICNGHYEVPYIPNI 184
Query: 168 EGLADFG----GEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLS 211
+GL ++ G V+H+ ++ E + G+ VLVVG +S +L L+
Sbjct: 185 KGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 232
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 48/228 (21%)
Query: 26 IVGAGPSGLATA-ACLRDQGVPFVML-ERAECIASLWQKRT------------------- 64
I+GAGPSGL TA A L ++ V L ER +W +
Sbjct: 13 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 72
Query: 65 --------------YDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQYLESYAEKFEI 110
Y L + P + F ++P + +Y YA+ +
Sbjct: 73 IVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP--L 130
Query: 111 NPRFNECVQSARYDETSGLWRVK-TASSAGS--TKTEFEYICRWLVVATGENAERVMPDI 167
P ++ G W V + AGS +K F+ + + G +P+I
Sbjct: 131 LPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVS----ICNGHYEVPYIPNI 186
Query: 168 EGLADFG----GEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLS 211
+GL ++ G V+H+ ++ E + G+ VLVVG +S +L L+
Sbjct: 187 KGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 234
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 39/206 (18%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQF 84
+IVGAGP+GL + +G+ F R LP+ QL L +
Sbjct: 9 LIVGAGPTGLFAGFYVGXRGLSF-------------------RFVDPLPEPGGQLTAL-Y 48
Query: 85 PED-------FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASS 137
PE FP+ K +E A NP ++ ++ + L++V T+
Sbjct: 49 PEKYIYDVAGFPKVYAKDLVKGLVEQVAP---FNPVYSLGERAETLEREGDLFKVTTSQG 105
Query: 138 AGSTKTEFEYICRWLVVATGENA-ERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLV 196
Y + +++A G A E G +F G ++ KS +++GK+VL+
Sbjct: 106 NA-------YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLI 157
Query: 197 VGCGNSGMELSLDLSNHNASPSMVVR 222
VG G+S ++ +L+L + +++ R
Sbjct: 158 VGGGDSAVDWALNLLDTARRITLIHR 183
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 147 YICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMEL 206
Y +++++ TG + + ++G +++ G+ C G +KGK+V+ +G GNSG
Sbjct: 113 YHAKYVIITTGTTHKHL--GVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIA 170
Query: 207 SLDLSNHNASPSMV 220
++ +S + + +++
Sbjct: 171 AISMSEYVKNVTII 184
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 87 DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASS-----AGST 141
+ YP ++ + L+ + P +C + E + + RV S A
Sbjct: 45 EIENYPGVKEVVSGLDF------MQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDG 98
Query: 142 KTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGN 201
KT FE + +++ATG + +R I+G +++ G+ + C G YK K+V V+G G+
Sbjct: 99 KT-FE--AKSVIIATGGSPKRT--GIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGD 153
Query: 202 SGMELSLDLSN 212
+ +E ++ L+N
Sbjct: 154 TAVEEAIYLAN 164
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFC 77
IVGAGPSGLA A LR G+ ++E + + T D L + Q+
Sbjct: 10 IVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFC 77
IVGAGPSGLA A LR G+ ++E + + T D L + Q+
Sbjct: 10 IVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFC 77
IVGAGPSGLA A LR G+ ++E + + T D L + Q+
Sbjct: 10 IVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|3S5W|A Chain A, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S5W|B Chain B, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S61|A Chain A, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
pdb|3S61|B Chain B, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
Length = 463
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 16/145 (11%)
Query: 91 YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICR 150
YP + +F YL A F+ R+ E V ++G S + E R
Sbjct: 123 YPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTR 182
Query: 151 WLVVATGENAERVMPDIEGLADFGGEVIHACDY---------KSGEKYKGKKVLVVGCGN 201
LVV+ G +P + G V H Y SG K K+ ++G G
Sbjct: 183 ALVVSPGGTPR--IPQVFRALKGDGRVFHHSQYLEHMAKQPCSSG---KPMKIAIIGGGQ 237
Query: 202 SGMELSLDLSNHNAS--PSMVVRSS 224
S E +DL++ S M++R+S
Sbjct: 238 SAAEAFIDLNDSYPSVQADMILRAS 262
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 1 MENLFRLVNHEDFLSRRCIWVNG---------PVIVGAGPSGLATAACLRDQGVPFVMLE 51
+E FR ++E+FL I NG VIVGAG SGL+ A L + G +LE
Sbjct: 20 LEECFRETDYEEFLE---IAKNGLSTTSNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLE 76
Query: 52 RAE 54
+E
Sbjct: 77 ASE 79
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFC 77
VIVGAGPSGL A L+ G+ +LE + + T D L + Q+
Sbjct: 11 VIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWV 63
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 146 EYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGME 205
E + +++ATG AE + G + GG + C G +K K++ V+G G+S +E
Sbjct: 102 ELTAKAVIIATG--AEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVE 159
Query: 206 LSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKW 247
L+ A +V + + IL F+ + W
Sbjct: 160 EGTFLTKF-ADKVTIVHRRDELRAQRILQDRAFKNDKIDFIW 200
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 1 MENLFRLVNHEDFLSRRCIWVNG---------PVIVGAGPSGLATAACLRDQGVPFVMLE 51
+E FR ++E+FL I NG V+VGAG SGL+ A L G +LE
Sbjct: 7 LEECFRETDYEEFLE---IARNGLKATSNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLE 63
Query: 52 RAE 54
+E
Sbjct: 64 ASE 66
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 78 QLPKLQFPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASS 137
QL E+FP +PT I +++ + + RF + S E R +S
Sbjct: 72 QLTTTTDVENFPGFPTGIMGIDLMDNCRAQ---SVRFGTNILSETVTEVDFSARPFRVTS 128
Query: 138 AGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEK--YKGKKVL 195
+T + +VVATG A R+ G + I AC G ++ K +
Sbjct: 129 DSTT-----VLADTVVVATGAVARRLY--FSGSDTYWNRGISACAVCDGAAPIFRNKPIA 181
Query: 196 VVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLM 244
V+G G+S ME L+ + S V+++ R ++TF + +M
Sbjct: 182 VIGGGDSAMEEGNFLTKYG--------SQVYIIHR----RNTFRASKIM 218
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 1 MENLFRLVNHEDFLSRRCIWVNG---------PVIVGAGPSGLATAACLRDQGVPFVMLE 51
+E FR ++E+FL I NG V+VGAG SGL+ A L G +LE
Sbjct: 7 LEECFRETDYEEFLE---IARNGLKKTSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLE 63
Query: 52 RAE 54
+E
Sbjct: 64 ASE 66
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 97/253 (38%), Gaps = 53/253 (20%)
Query: 16 RRCIWVNGPVIVGAGPSGLATA--ACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLP 73
R V I+G GP GL TA +R V + I SL Q L
Sbjct: 2 REDTKVYDITIIGGGPVGLFTAFYGGMRQASV--------KIIESLPQ----------LG 43
Query: 74 KQFCQLPKLQFPEDFPEYPTKR--QFIQYLESYAEKFEINPRFNECVQSARYDETSGLWR 131
Q L ++ D +P R + I L+ KF+ + V+S + G+++
Sbjct: 44 GQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQAVESVE-KQADGVFK 102
Query: 132 VKTASSAGSTKTEFEYICRWLVVATGENAERVMP-DIEGLADFGGEVIHACDYKSGEKYK 190
+ T +KT +++ G A + ++E + G+ +H +K+
Sbjct: 103 LVTNEETHYSKT--------VIITAGNGAFKPRKLELENAEQYEGKNLHYF-VDDLQKFA 153
Query: 191 GKKVLVVGCGNSGMELSLDLS----------------NHNASPSMVVRSSVHVL----PR 230
G++V ++G G+S ++ +L L H S + S V+VL P
Sbjct: 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPA 213
Query: 231 EILGKSTFELATL 243
E++G+ E L
Sbjct: 214 ELIGEDKIEQLVL 226
>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|B Chain B, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|C Chain C, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|D Chain D, Escherichia Coli Ketol-Acid Reductoisomerase
Length = 491
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 182 DYKSGEKY-KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVR 222
++ G Y +GKKV++VGCG G+ L++ + S +R
Sbjct: 27 EFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR 68
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIA---SLWQKRT 64
VIVG G GL +RD G+ R E IA + W+K T
Sbjct: 41 VIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT 83
>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
pdb|3ULK|B Chain B, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
Length = 491
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 182 DYKSGEKY-KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVR 222
++ G Y +GKKV++VGCG G+ L++ + S +R
Sbjct: 27 EFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR 68
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIA---SLWQKRT 64
VIVG G GL +RD G+ R E IA + W+K T
Sbjct: 41 VIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT 83
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 165 PDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224
PDI G ++G I + D S ++ GK LVVG G G+E + L P+++VRS
Sbjct: 161 PDIPGAVEYG---ITSDDLFSLDREPGK-TLVVGAGYIGLECAGFLKGLGYEPTVMVRSI 216
Query: 225 V 225
V
Sbjct: 217 V 217
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 165 PDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224
PDI G ++G I + D S ++ GK LVVG G G+E + L P+++VRS
Sbjct: 165 PDIPGAVEYG---ITSDDLFSLDREPGK-TLVVGAGYIGLECAGFLKGLGYEPTVMVRSI 220
Query: 225 V 225
V
Sbjct: 221 V 221
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 165 PDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224
PDI G ++G I + D S ++ GK LVVG G G+E + L P+++VRS
Sbjct: 165 PDIPGAVEYG---ITSDDLFSLDREPGK-TLVVGAGYIGLECAGFLKGLGYEPTVMVRSI 220
Query: 225 V 225
V
Sbjct: 221 V 221
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase
R229w Mutant
Length = 261
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 263 FILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSG--------HINVVPGIKR 314
++ G T ++G RP+ P L + G++ +D+G ++K G H+ + +K+
Sbjct: 4 WLRGVTATFG--RPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQ 61
Query: 315 ISCGQAELINGEKL-DIDAIVLATGYRSNVPS 345
+ E + + + +A+ LAT R PS
Sbjct: 62 FAAWFEEAVQCPDIGEANAMCLATCTRDGKPS 93
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 142 KTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGN 201
KTE + + ++V TG ++ +G +F G+ + C G YK K+V V+G G+
Sbjct: 103 KTE---LAKAVIVCTGSAPKKA--GFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGD 157
Query: 202 SGMELSLDLSN 212
+ +E +L L+N
Sbjct: 158 TALEEALYLAN 168
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 41/301 (13%)
Query: 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPK 81
N I+G+GP+ A + L RAE L++ + + QL
Sbjct: 23 NKVTIIGSGPAAHTAA----------IYLARAEIKPILYEGMMANGI-----AAGGQLTT 67
Query: 82 LQFPEDFPEYP---TKRQFIQYLESYAEKF--EINPRFNECVQSARYDETSGLWRVKTAS 136
E+FP +P T + + + + KF EI E V ++ D +S +++ T
Sbjct: 68 TTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI---ITETV--SKVDLSSKPFKLWTEF 122
Query: 137 SAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEK--YKGKKV 194
+ + + I ++ATG +A+R+ + G + + I AC G ++ K +
Sbjct: 123 NEDAEPVTTDAI----ILATGASAKRM--HLPGEETYWQKGISACAVCDGAVPIFRNKPL 176
Query: 195 LVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGK--STFELATLMMKWLPLWL 252
V+G G+S E + L+ + + M+VR H+ I+ K E ++ + L
Sbjct: 177 AVIGGGDSACEEAQFLTKYGSKVFMLVRKD-HLRASTIMQKRAEKNEKIEILYNTVALEA 235
Query: 253 VDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDI--GALKKIRSGHINVVP 310
L+ A I ++ P G L +G TP I G + +G+I VP
Sbjct: 236 KGDGKLLNALRIKNTKKNEETDLPVSG---LFYAIGHTPATKIVAGQVDTDEAGYIKTVP 292
Query: 311 G 311
G
Sbjct: 293 G 293
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human
Pyridoxine-5'-Phosphate Oxidase
Length = 261
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 263 FILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSG--------HINVVPGIKR 314
++ G T ++G RP+ P L + G++ +D+G ++K G H+ + +K+
Sbjct: 4 WLRGVTATFG--RPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQ 61
Query: 315 ISCGQAELINGEKL-DIDAIVLATGYRSNVPS 345
+ E + + + +A+ LAT R PS
Sbjct: 62 FAAWFEEAVQCPDIGEANAMCLATCTRDGKPS 93
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 41/301 (13%)
Query: 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPK 81
N I+G+GP+ A + L RAE L++ + + QL
Sbjct: 11 NKVTIIGSGPAAHTAA----------IYLARAEIKPILYEGMMANGIAAG-----GQLTT 55
Query: 82 LQFPEDFPEYP---TKRQFIQYLESYAEKF--EINPRFNECVQSARYDETSGLWRVKTAS 136
E+FP +P T + + + + KF EI E V ++ D +S +++ T
Sbjct: 56 TTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI---ITETV--SKVDLSSKPFKLWTEF 110
Query: 137 SAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEK--YKGKKV 194
+ + + I ++ATG +A+R+ + G + + I AC G ++ K +
Sbjct: 111 NEDAEPVTTDAI----ILATGASAKRM--HLPGEETYWQKGISACAVCDGAVPIFRNKPL 164
Query: 195 LVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGK--STFELATLMMKWLPLWL 252
V+G G+S E + L+ + + M+VR H+ I+ K E ++ + L
Sbjct: 165 AVIGGGDSACEEAQFLTKYGSKVFMLVRKD-HLRASTIMQKRAEKNEKIEILYNTVALEA 223
Query: 253 VDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDI--GALKKIRSGHINVVP 310
L+ A I ++ P G L +G TP I G + +G+I VP
Sbjct: 224 KGDGKLLNALRIKNTKKNEETDLPVSG---LFYAIGHTPATKIVAGQVDTDEAGYIKTVP 280
Query: 311 G 311
G
Sbjct: 281 G 281
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHL 72
V++G G SGL+ A L + GV ++LE + + RTY N H+
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG----RTYTIRNEHV 49
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHL 72
V++G G SGL+ A L + GV ++LE + + RTY N H+
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG----RTYTIRNEHV 49
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHL 72
V++G G SGL+ A L + GV ++LE + + RTY N H+
Sbjct: 17 VVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG----RTYTIRNEHV 60
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFC 77
IVGAG SGLA A LR G+ ++E + + T D L + Q+
Sbjct: 10 IVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLER 52
I+GAGPSGL L G+ V+LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 295 IGALKKIRSGHINVVPGIKRISCGQAELIN-------GEKLDIDAIVLATGYRSNVPSWL 347
IGA+ G++ + GI R+ G A ++ G++L D IV+ATG R VP
Sbjct: 91 IGAINSFWDGYVERL-GITRVD-GHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLP 148
Query: 348 QESEFFSENGF 358
+ +GF
Sbjct: 149 GAELGITSDGF 159
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 305 HINVVPGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAP 362
+++V+ G R + +NGE + D I++ATG R + P +GF P
Sbjct: 107 NVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALP 164
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 305 HINVVPGIKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAP 362
+++V+ G R + +NGE + D I++ATG R + P +GF P
Sbjct: 107 NVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALP 164
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 23 GP--VIVGAGPSGLATAACLRDQGVP-FVMLERAECIASLWQKRTYDRLNLHL 72
GP ++VGAG SG++ A L + G+ ++LE + I K + +N+ L
Sbjct: 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL 56
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 23 GP--VIVGAGPSGLATAACLRDQGVP-FVMLERAECIASLWQKRTYDRLNLHL 72
GP ++VGAG SG++ A L + G+ ++LE + I K + +N+ L
Sbjct: 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL 56
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A
Resolution
Length = 499
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLER 52
++VGAGP+GL A LR GV ++LE+
Sbjct: 16 IVVGAGPAGLMLAGELRLGGVDVMVLEQ 43
>pdb|4FK1|A Chain A, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|B Chain B, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|C Chain C, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|D Chain D, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
Length = 304
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 85/215 (39%), Gaps = 47/215 (21%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFP 85
++GAGP+GL + ++L RA +L+ T F ++ P
Sbjct: 11 VIGAGPAGLNAS----------LVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIK-P 59
Query: 86 EDFPE--------YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASS 137
E+F E YP+ + Y E +++GL+ +
Sbjct: 60 EEFKEIGLNEVXKYPS----VHYYEKTVVXIT--------------KQSTGLFEI----- 96
Query: 138 AGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVV 197
TK +Y+ +++ATG E P I + ++ G+ + +C Y G + K + ++++
Sbjct: 97 --VTKDHTKYLAERVLLATGXQEE--FPSIPNVREYYGKSLFSCPYCDGWELKDQPLIII 152
Query: 198 GCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREI 232
N L +N S +V+ ++ + L + I
Sbjct: 153 -SENEDHTLHXTKLVYNWSTDLVIATNGNELSQTI 186
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 141 TKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCG 200
TK + E+ +++ G +R + G +F G I C +K + V V+G G
Sbjct: 106 TKRKGEFKADSVILGIG--VKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGG 163
Query: 201 NSGMELSLDLSNHNASPSMVVR 222
+S +E + LS+++ ++ R
Sbjct: 164 DSALEGAEILSSYSTKVYLIHR 185
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAE 54
I+G G G A AA L + VPF++++R E
Sbjct: 353 IIGHGRIGCAAAAFLDRKPVPFILIDRQE 381
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAE 54
I+G G G A AA L + VPF++++R E
Sbjct: 353 IIGHGRIGCAAAAFLDRKPVPFILIDRQE 381
>pdb|2VAD|A Chain A, Monomeric Red Fluorescent Protein, Dsred.m1
Length = 223
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 13/56 (23%)
Query: 175 GEVIHA----------CDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMV 220
GE+ HA CD+K+ YK KK + + GN ++ LD++NHN ++V
Sbjct: 157 GEISHALKLKDGGHYTCDFKT--VYKAKKPVQL-PGNHYVDSKLDITNHNEDYTVV 209
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLER 52
+IVGAGP G+ A L + G ++LER
Sbjct: 6 IIVGAGPGGIIAADRLSEAGKKVLLLER 33
>pdb|3NLC|A Chain A, Crystal Structure Of The Vp0956 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr147
Length = 549
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 24 PVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS-------LWQKRTYD 66
P+++G GP GL L G +++ER + + W+KRT +
Sbjct: 110 PIVIGFGPCGLFAGLVLAQXGFNPIIVERGKEVRERTKDTFGFWRKRTLN 159
>pdb|4GVL|A Chain A, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|B Chain B, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|C Chain C, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|D Chain D, Crystal Structure Of The Gsuk Rck Domain
Length = 462
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 26 IVGAGPSGLATAACLRDQGVPFVMLERAE 54
I+G G G A AA L + VPF++++R E
Sbjct: 250 IIGHGRIGCAAAAFLDRKPVPFILIDRQE 278
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLER 52
+IVGAGP G+ A L + G ++LER
Sbjct: 11 IIVGAGPGGIIAADRLSEAGKKVLLLER 38
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 25 VIVGAGPSGLATAACLRDQGVPFVMLERAE 54
++GAG GLA A L+ G+P ++LE+ +
Sbjct: 5 TVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 260 LAWFILGNTES-------YGLKRPSMG-PLALKN-------------TMGKTPVLDIGAL 298
+AW LG ES Y L R G PLA T+G VL +G +
Sbjct: 257 IAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRM 316
Query: 299 KKIRSGHINVVPGIKRISCGQA 320
K + + + +KR SCG+A
Sbjct: 317 KDEGTAAVEITSIMKRNSCGKA 338
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 260 LAWFILGNTES-------YGLKRPSMG-PLALKN-------------TMGKTPVLDIGAL 298
+AW LG ES Y L R G PLA T+G VL +G +
Sbjct: 258 IAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRM 317
Query: 299 KKIRSGHINVVPGIKRISCGQA 320
K + + + +KR SCG+A
Sbjct: 318 KDEGTAAVEITSIMKRNSCGKA 339
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 260 LAWFILGNTES-------YGLKRPSMG-PLALKN-------------TMGKTPVLDIGAL 298
+AW LG ES Y L R G PLA T+G VL +G +
Sbjct: 261 IAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRM 320
Query: 299 KKIRSGHINVVPGIKRISCGQA 320
K + + + +KR SCG+A
Sbjct: 321 KDEGTAAVEITSIMKRNSCGKA 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,049,986
Number of Sequences: 62578
Number of extensions: 556015
Number of successful extensions: 1854
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1692
Number of HSP's gapped (non-prelim): 167
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)