Query 014522
Match_columns 423
No_of_seqs 179 out of 2264
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 6.6E-43 1.4E-47 343.3 23.5 372 22-407 2-402 (531)
2 PLN02172 flavin-containing mon 100.0 1.6E-37 3.6E-42 301.7 29.9 314 20-406 9-357 (461)
3 COG1249 Lpd Pyruvate/2-oxoglut 100.0 9.4E-36 2E-40 285.0 22.2 304 19-399 2-334 (454)
4 TIGR01292 TRX_reduct thioredox 100.0 8.6E-35 1.9E-39 271.4 26.9 283 22-401 1-300 (300)
5 COG0492 TrxB Thioredoxin reduc 100.0 1.9E-34 4.2E-39 263.3 27.3 288 20-404 2-303 (305)
6 PRK10262 thioredoxin reductase 100.0 2E-34 4.3E-39 270.9 26.1 294 19-405 4-318 (321)
7 COG2072 TrkA Predicted flavopr 100.0 1.3E-33 2.8E-38 273.3 32.2 354 19-382 6-389 (443)
8 TIGR03140 AhpF alkyl hydropero 100.0 2.3E-33 4.9E-38 278.7 27.4 287 19-403 210-514 (515)
9 PRK15317 alkyl hydroperoxide r 100.0 2.5E-33 5.5E-38 278.7 27.5 288 19-404 209-514 (517)
10 TIGR01421 gluta_reduc_1 glutat 100.0 1.3E-33 2.8E-38 276.1 21.9 296 21-399 2-327 (450)
11 PLN02507 glutathione reductase 100.0 2.6E-33 5.6E-38 276.5 23.7 304 20-400 24-363 (499)
12 TIGR01424 gluta_reduc_2 glutat 100.0 3.6E-33 7.8E-38 273.3 24.3 299 21-400 2-326 (446)
13 PRK06116 glutathione reductase 100.0 2.1E-33 4.6E-38 275.7 21.7 298 20-400 3-328 (450)
14 PRK08010 pyridine nucleotide-d 100.0 4.1E-33 8.8E-38 273.1 21.8 296 21-399 3-316 (441)
15 PRK05249 soluble pyridine nucl 100.0 8.5E-33 1.8E-37 272.6 24.0 302 20-400 4-335 (461)
16 PRK13512 coenzyme A disulfide 100.0 5.4E-33 1.2E-37 271.2 19.8 285 21-399 1-311 (438)
17 PRK04965 NADH:flavorubredoxin 100.0 1.7E-32 3.6E-37 263.4 22.2 282 20-401 1-303 (377)
18 TIGR03143 AhpF_homolog putativ 100.0 5.6E-32 1.2E-36 270.6 26.5 289 20-406 3-313 (555)
19 TIGR02053 MerA mercuric reduct 100.0 7.9E-33 1.7E-37 272.7 19.7 300 22-400 1-329 (463)
20 COG1252 Ndh NADH dehydrogenase 100.0 2.8E-33 6E-38 261.2 15.0 290 20-406 2-336 (405)
21 PRK06416 dihydrolipoamide dehy 100.0 2.5E-32 5.5E-37 269.2 22.7 302 20-399 3-333 (462)
22 KOG1399 Flavin-containing mono 100.0 6.1E-32 1.3E-36 257.5 24.3 308 19-402 4-334 (448)
23 PRK06370 mercuric reductase; V 100.0 2.1E-32 4.5E-37 269.6 21.6 298 20-400 4-334 (463)
24 PRK06467 dihydrolipoamide dehy 100.0 4.3E-32 9.3E-37 266.9 22.4 303 20-400 3-337 (471)
25 PRK14694 putative mercuric red 100.0 5.5E-32 1.2E-36 266.5 23.0 305 18-400 3-335 (468)
26 TIGR01423 trypano_reduc trypan 100.0 6.8E-32 1.5E-36 264.7 22.7 308 20-400 2-351 (486)
27 PRK14989 nitrite reductase sub 100.0 2.9E-32 6.2E-37 281.5 20.2 285 21-400 3-310 (847)
28 PRK14727 putative mercuric red 100.0 1.7E-31 3.7E-36 263.4 24.0 304 20-400 15-346 (479)
29 PTZ00058 glutathione reductase 100.0 1.6E-31 3.5E-36 264.6 23.3 306 17-400 44-432 (561)
30 PRK07251 pyridine nucleotide-d 100.0 2.8E-31 6E-36 259.9 24.8 297 21-400 3-316 (438)
31 PTZ00318 NADH dehydrogenase-li 100.0 8.2E-32 1.8E-36 261.8 20.4 293 20-404 9-350 (424)
32 PLN02546 glutathione reductase 100.0 3.2E-32 6.9E-37 269.8 17.7 299 20-400 78-413 (558)
33 PRK06292 dihydrolipoamide dehy 100.0 1.5E-31 3.3E-36 263.6 22.3 299 20-400 2-331 (460)
34 PRK07818 dihydrolipoamide dehy 100.0 3.3E-31 7.2E-36 261.0 24.2 306 21-400 4-336 (466)
35 PRK09564 coenzyme A disulfide 100.0 1E-31 2.2E-36 263.9 20.1 286 23-400 2-317 (444)
36 PRK05976 dihydrolipoamide dehy 100.0 2.9E-31 6.3E-36 261.9 22.3 309 20-400 3-343 (472)
37 PRK13748 putative mercuric red 100.0 5.8E-31 1.3E-35 265.7 24.3 302 21-400 98-428 (561)
38 PRK06115 dihydrolipoamide dehy 100.0 4.2E-31 9.1E-36 259.8 22.4 302 21-400 3-338 (466)
39 PRK12831 putative oxidoreducta 100.0 1.3E-31 2.8E-36 262.1 18.6 278 19-402 138-461 (464)
40 PRK07845 flavoprotein disulfid 100.0 1.6E-30 3.5E-35 255.6 26.4 308 21-400 1-337 (466)
41 PRK09754 phenylpropionate diox 100.0 1.1E-31 2.4E-36 259.2 17.6 284 21-401 3-310 (396)
42 PRK06327 dihydrolipoamide dehy 100.0 4.7E-31 1E-35 260.2 21.6 308 20-400 3-347 (475)
43 PTZ00052 thioredoxin reductase 100.0 3.3E-31 7.1E-36 261.8 20.5 304 21-400 5-341 (499)
44 TIGR01316 gltA glutamate synth 100.0 3E-31 6.5E-36 259.1 19.5 272 20-401 132-449 (449)
45 TIGR01350 lipoamide_DH dihydro 100.0 1.3E-30 2.8E-35 257.2 23.9 303 21-401 1-333 (461)
46 PRK07846 mycothione reductase; 100.0 4.2E-31 9.1E-36 258.2 20.1 296 21-400 1-325 (451)
47 TIGR01438 TGR thioredoxin and 100.0 8.4E-31 1.8E-35 257.7 21.9 303 21-400 2-344 (484)
48 TIGR02374 nitri_red_nirB nitri 100.0 6.2E-31 1.3E-35 272.1 19.0 282 24-400 1-301 (785)
49 PRK09853 putative selenate red 100.0 2.1E-30 4.6E-35 265.8 21.6 271 20-402 538-842 (1019)
50 PRK11749 dihydropyrimidine deh 100.0 1.1E-30 2.3E-35 256.6 18.8 276 19-403 138-453 (457)
51 PRK12779 putative bifunctional 100.0 1.1E-29 2.4E-34 264.7 22.6 277 20-404 305-629 (944)
52 PRK06912 acoL dihydrolipoamide 100.0 8.2E-30 1.8E-34 250.4 20.3 295 23-399 2-329 (458)
53 PTZ00153 lipoamide dehydrogena 100.0 1.5E-29 3.2E-34 253.7 21.3 307 21-400 116-495 (659)
54 TIGR03169 Nterm_to_SelD pyridi 100.0 7.6E-30 1.7E-34 244.2 17.5 285 23-406 1-315 (364)
55 KOG0405 Pyridine nucleotide-di 100.0 2E-29 4.4E-34 222.3 17.7 305 19-400 18-350 (478)
56 TIGR03452 mycothione_red mycot 100.0 2.2E-29 4.7E-34 246.5 19.2 296 21-400 2-328 (452)
57 PRK12770 putative glutamate sy 100.0 8.2E-29 1.8E-33 235.4 21.4 286 20-402 17-350 (352)
58 PRK12778 putative bifunctional 100.0 2.4E-29 5.3E-34 260.5 17.6 275 20-403 430-751 (752)
59 KOG0404 Thioredoxin reductase 100.0 5.9E-29 1.3E-33 206.4 15.7 288 20-402 7-319 (322)
60 TIGR03315 Se_ygfK putative sel 100.0 7.5E-29 1.6E-33 255.8 20.2 271 20-401 536-839 (1012)
61 PRK12814 putative NADPH-depend 100.0 1.1E-28 2.4E-33 250.7 20.6 276 20-404 192-503 (652)
62 PRK12810 gltD glutamate syntha 100.0 3E-28 6.4E-33 239.7 20.9 286 20-404 142-467 (471)
63 PRK12775 putative trifunctiona 100.0 6E-28 1.3E-32 254.0 22.7 279 20-405 429-758 (1006)
64 PRK12769 putative oxidoreducta 100.0 5.6E-28 1.2E-32 246.6 21.8 277 20-403 326-653 (654)
65 KOG4716 Thioredoxin reductase 100.0 7.2E-28 1.6E-32 211.7 18.4 329 15-403 13-368 (503)
66 TIGR01318 gltD_gamma_fam gluta 100.0 2.1E-27 4.5E-32 232.9 22.9 274 20-402 140-466 (467)
67 PF13738 Pyr_redox_3: Pyridine 100.0 2.9E-28 6.2E-33 214.1 14.3 190 25-226 1-202 (203)
68 KOG1335 Dihydrolipoamide dehyd 100.0 1.5E-27 3.2E-32 213.2 16.2 306 20-400 38-377 (506)
69 PRK12809 putative oxidoreducta 100.0 9.3E-27 2E-31 236.6 21.9 278 20-404 309-637 (639)
70 KOG1336 Monodehydroascorbate/f 100.0 2.8E-27 6E-32 219.0 16.4 264 21-383 74-353 (478)
71 TIGR03385 CoA_CoA_reduc CoA-di 99.9 2.3E-26 5E-31 224.7 16.6 273 35-400 1-304 (427)
72 COG3634 AhpF Alkyl hydroperoxi 99.9 5.3E-26 1.2E-30 200.8 17.1 289 20-403 210-516 (520)
73 TIGR01317 GOGAT_sm_gam glutama 99.9 9E-26 1.9E-30 222.2 20.5 306 20-403 142-480 (485)
74 PRK13984 putative oxidoreducta 99.9 5E-26 1.1E-30 231.1 18.0 274 20-402 282-602 (604)
75 PLN02852 ferredoxin-NADP+ redu 99.9 9.3E-25 2E-29 211.7 22.7 311 20-403 25-423 (491)
76 PRK12771 putative glutamate sy 99.9 2E-25 4.2E-30 224.6 17.6 275 20-404 136-446 (564)
77 COG1251 NirB NAD(P)H-nitrite r 99.9 1.6E-25 3.4E-30 216.7 15.0 288 21-403 3-309 (793)
78 TIGR01372 soxA sarcosine oxida 99.9 6E-24 1.3E-28 225.2 24.2 282 20-403 162-473 (985)
79 PF13434 K_oxygenase: L-lysine 99.9 5.4E-25 1.2E-29 205.9 13.9 206 21-235 2-235 (341)
80 KOG2495 NADH-dehydrogenase (ub 99.9 2.7E-23 5.8E-28 189.1 14.6 294 19-402 53-397 (491)
81 COG3486 IucD Lysine/ornithine 99.9 3.4E-21 7.4E-26 175.2 20.6 330 20-381 4-387 (436)
82 KOG0399 Glutamate synthase [Am 99.8 1.7E-20 3.7E-25 186.5 12.3 307 21-402 1785-2120(2142)
83 COG0493 GltD NADPH-dependent g 99.8 1.9E-19 4.2E-24 173.0 13.8 296 21-401 123-450 (457)
84 COG0446 HcaD Uncharacterized N 99.8 5.8E-19 1.3E-23 172.2 16.3 278 24-400 1-310 (415)
85 KOG1800 Ferredoxin/adrenodoxin 99.8 2.3E-18 4.9E-23 154.7 17.3 164 19-224 18-214 (468)
86 PTZ00188 adrenodoxin reductase 99.8 9.1E-17 2E-21 153.6 24.3 163 20-224 38-251 (506)
87 COG4529 Uncharacterized protei 99.8 5.5E-16 1.2E-20 145.5 25.5 371 21-402 1-459 (474)
88 KOG1346 Programmed cell death 99.7 3.4E-18 7.3E-23 155.0 7.8 302 19-407 176-526 (659)
89 PRK06567 putative bifunctional 99.7 1.1E-16 2.4E-21 163.2 16.2 186 20-232 382-593 (1028)
90 PRK09897 hypothetical protein; 99.7 1.1E-15 2.4E-20 150.4 21.8 190 21-225 1-246 (534)
91 KOG3851 Sulfide:quinone oxidor 99.7 2.8E-16 6.1E-21 138.1 10.7 301 18-419 36-375 (446)
92 PF07992 Pyr_redox_2: Pyridine 99.6 1.1E-16 2.3E-21 140.2 5.2 121 23-170 1-130 (201)
93 COG1148 HdrA Heterodisulfide r 99.6 1.6E-14 3.5E-19 133.9 18.2 78 326-403 461-546 (622)
94 KOG2755 Oxidoreductase [Genera 99.5 1.8E-13 3.9E-18 117.4 10.6 298 23-381 1-321 (334)
95 COG2081 Predicted flavoprotein 99.5 2.9E-13 6.2E-18 124.3 9.5 134 20-162 2-169 (408)
96 PRK05329 anaerobic glycerol-3- 99.4 8.4E-13 1.8E-17 126.7 12.5 35 20-54 1-35 (422)
97 PF03486 HI0933_like: HI0933-l 99.3 7.1E-12 1.5E-16 120.0 11.9 133 22-162 1-168 (409)
98 PF13454 NAD_binding_9: FAD-NA 99.3 3.3E-11 7.1E-16 100.5 13.1 125 25-158 1-155 (156)
99 TIGR02032 GG-red-SF geranylger 99.3 2.7E-11 5.8E-16 112.6 12.6 131 22-160 1-148 (295)
100 PRK10157 putative oxidoreducta 99.2 2E-10 4.3E-15 112.1 15.1 131 20-159 4-163 (428)
101 PRK04176 ribulose-1,5-biphosph 99.2 2.4E-10 5.2E-15 103.2 13.9 141 20-160 24-173 (257)
102 COG0644 FixC Dehydrogenases (f 99.2 1.1E-10 2.3E-15 113.0 12.3 131 20-158 2-150 (396)
103 COG3380 Predicted NAD/FAD-depe 99.2 7.3E-11 1.6E-15 102.3 9.8 125 21-158 1-158 (331)
104 TIGR02023 BchP-ChlP geranylger 99.2 2.6E-10 5.6E-15 110.2 14.7 135 22-161 1-156 (388)
105 TIGR00292 thiazole biosynthesi 99.2 2E-10 4.3E-15 103.3 12.8 140 20-159 20-169 (254)
106 PLN02463 lycopene beta cyclase 99.2 2.1E-10 4.6E-15 111.6 13.2 132 18-160 25-169 (447)
107 PRK08244 hypothetical protein; 99.2 4.8E-10 1E-14 111.8 16.1 136 20-161 1-160 (493)
108 PRK06847 hypothetical protein; 99.2 5.9E-10 1.3E-14 107.4 15.8 134 20-162 3-165 (375)
109 PRK10015 oxidoreductase; Provi 99.2 7.5E-10 1.6E-14 108.0 15.7 131 20-159 4-163 (429)
110 PRK07364 2-octaprenyl-6-methox 99.2 4.9E-10 1.1E-14 109.4 14.3 145 12-162 9-183 (415)
111 COG1635 THI4 Ribulose 1,5-bisp 99.1 8.3E-10 1.8E-14 93.0 12.1 138 21-158 30-176 (262)
112 PRK06834 hypothetical protein; 99.1 1.3E-09 2.9E-14 107.9 15.5 132 21-161 3-157 (488)
113 TIGR01790 carotene-cycl lycope 99.1 7.7E-10 1.7E-14 107.1 13.6 129 23-160 1-141 (388)
114 PRK08013 oxidoreductase; Provi 99.1 8.2E-10 1.8E-14 107.2 13.5 133 21-162 3-170 (400)
115 PLN02697 lycopene epsilon cycl 99.1 1.1E-09 2.5E-14 108.2 14.4 131 19-160 106-248 (529)
116 PRK05714 2-octaprenyl-3-methyl 99.1 5.1E-10 1.1E-14 108.9 11.7 134 20-162 1-170 (405)
117 PRK06184 hypothetical protein; 99.1 1.8E-09 3.9E-14 107.9 15.7 135 21-161 3-169 (502)
118 PRK07333 2-octaprenyl-6-methox 99.1 1.1E-09 2.4E-14 106.5 13.1 132 21-161 1-168 (403)
119 PF05834 Lycopene_cycl: Lycope 99.1 1.3E-09 2.7E-14 104.6 13.2 120 23-158 1-140 (374)
120 PRK06183 mhpA 3-(3-hydroxyphen 99.1 3.2E-09 7E-14 107.0 16.6 138 19-162 8-176 (538)
121 PLN00093 geranylgeranyl diphos 99.1 1.9E-09 4.1E-14 105.5 14.3 141 19-160 37-199 (450)
122 PF01494 FAD_binding_3: FAD bi 99.1 5.6E-10 1.2E-14 106.5 10.5 135 22-161 2-173 (356)
123 PRK08773 2-octaprenyl-3-methyl 99.1 2E-09 4.4E-14 104.2 14.1 134 19-161 4-170 (392)
124 PRK07190 hypothetical protein; 99.1 2.5E-09 5.5E-14 105.8 14.9 132 20-160 4-165 (487)
125 COG0654 UbiH 2-polyprenyl-6-me 99.1 1.8E-09 3.9E-14 104.3 13.5 133 21-161 2-163 (387)
126 PF01946 Thi4: Thi4 family; PD 99.0 1.2E-09 2.6E-14 92.7 9.7 138 20-158 16-163 (230)
127 PRK06617 2-octaprenyl-6-methox 99.0 2.4E-09 5.3E-14 102.9 13.3 131 21-162 1-162 (374)
128 PRK11445 putative oxidoreducta 99.0 4.2E-09 9.1E-14 100.3 14.7 133 21-161 1-158 (351)
129 TIGR02028 ChlP geranylgeranyl 99.0 4.2E-09 9.1E-14 101.9 14.9 138 22-160 1-160 (398)
130 PRK07494 2-octaprenyl-6-methox 99.0 2E-09 4.4E-14 104.1 12.7 133 20-161 6-168 (388)
131 PRK06185 hypothetical protein; 99.0 3.5E-09 7.6E-14 103.1 14.2 137 19-161 4-170 (407)
132 PRK08132 FAD-dependent oxidore 99.0 9.3E-09 2E-13 103.9 17.0 148 8-161 8-186 (547)
133 PRK07608 ubiquinone biosynthes 99.0 3.1E-09 6.7E-14 102.9 13.1 132 20-161 4-168 (388)
134 PRK08020 ubiF 2-octaprenyl-3-m 99.0 2.6E-09 5.7E-14 103.4 12.4 133 20-161 4-170 (391)
135 PRK09126 hypothetical protein; 99.0 4.1E-09 8.8E-14 102.2 13.6 133 20-161 2-168 (392)
136 TIGR01988 Ubi-OHases Ubiquinon 99.0 5.4E-09 1.2E-13 101.0 13.1 130 23-161 1-164 (385)
137 PRK06753 hypothetical protein; 99.0 6E-09 1.3E-13 100.3 13.3 127 23-161 2-153 (373)
138 PRK08163 salicylate hydroxylas 99.0 3.1E-09 6.8E-14 103.1 11.3 134 20-162 3-168 (396)
139 PRK07045 putative monooxygenas 99.0 1.2E-08 2.6E-13 98.7 14.7 135 20-161 4-166 (388)
140 PRK06126 hypothetical protein; 99.0 1.9E-08 4.2E-13 101.7 16.4 139 19-161 5-189 (545)
141 PRK07588 hypothetical protein; 99.0 6.1E-09 1.3E-13 100.9 12.2 132 22-163 1-161 (391)
142 PF01266 DAO: FAD dependent ox 99.0 2.8E-09 6E-14 101.7 9.6 60 93-162 145-205 (358)
143 TIGR00275 flavoprotein, HI0933 99.0 9.3E-09 2E-13 99.4 13.2 127 25-161 1-161 (400)
144 TIGR01984 UbiH 2-polyprenyl-6- 99.0 6E-09 1.3E-13 100.6 11.8 130 23-161 1-163 (382)
145 PRK08243 4-hydroxybenzoate 3-m 98.9 1.3E-08 2.8E-13 98.6 14.1 135 20-162 1-165 (392)
146 PRK05732 2-octaprenyl-6-methox 98.9 9.7E-09 2.1E-13 99.6 13.1 133 20-161 2-170 (395)
147 PRK08850 2-octaprenyl-6-methox 98.9 1.4E-08 3.1E-13 98.8 13.1 132 21-161 4-169 (405)
148 TIGR01989 COQ6 Ubiquinone bios 98.9 1.2E-08 2.7E-13 100.1 12.7 134 22-162 1-185 (437)
149 PRK05868 hypothetical protein; 98.9 2.6E-08 5.7E-13 95.6 14.6 132 21-162 1-162 (372)
150 PRK07236 hypothetical protein; 98.9 3E-08 6.5E-13 95.9 15.0 131 20-162 5-156 (386)
151 PRK08849 2-octaprenyl-3-methyl 98.9 1.7E-08 3.6E-13 97.5 13.0 133 21-162 3-169 (384)
152 PRK11728 hydroxyglutarate oxid 98.9 2E-08 4.3E-13 97.3 13.4 58 93-160 147-204 (393)
153 KOG2820 FAD-dependent oxidored 98.9 1.3E-08 2.8E-13 91.2 10.9 143 17-166 3-218 (399)
154 PRK11259 solA N-methyltryptoph 98.9 2.4E-08 5.2E-13 96.2 13.6 63 93-165 147-209 (376)
155 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 2.7E-08 5.8E-13 96.2 13.6 137 20-162 1-165 (390)
156 PRK06475 salicylate hydroxylas 98.9 2.5E-08 5.4E-13 96.9 13.2 136 21-162 2-169 (400)
157 TIGR01377 soxA_mon sarcosine o 98.9 2.7E-08 5.8E-13 96.0 13.4 60 93-162 143-202 (380)
158 TIGR01813 flavo_cyto_c flavocy 98.9 6E-08 1.3E-12 95.4 15.7 135 23-161 1-193 (439)
159 PF12831 FAD_oxidored: FAD dep 98.9 1.3E-09 2.8E-14 106.3 3.9 131 23-158 1-148 (428)
160 PRK06996 hypothetical protein; 98.9 3.7E-08 8E-13 95.6 13.8 132 19-158 9-172 (398)
161 PRK05192 tRNA uridine 5-carbox 98.9 1.9E-08 4.1E-13 99.8 11.8 132 20-160 3-157 (618)
162 PRK07538 hypothetical protein; 98.9 1.5E-07 3.3E-12 91.8 17.8 136 22-161 1-166 (413)
163 PRK13369 glycerol-3-phosphate 98.8 6.7E-08 1.5E-12 96.4 15.4 66 93-163 153-218 (502)
164 PRK12409 D-amino acid dehydrog 98.8 6.7E-08 1.5E-12 94.2 13.8 65 93-161 195-259 (410)
165 PRK12266 glpD glycerol-3-phosp 98.8 1.1E-07 2.3E-12 94.9 15.0 65 95-163 155-219 (508)
166 TIGR03219 salicylate_mono sali 98.8 5.1E-08 1.1E-12 95.2 12.3 128 23-161 2-160 (414)
167 PLN02985 squalene monooxygenas 98.8 1.2E-07 2.6E-12 94.4 15.0 137 19-161 41-209 (514)
168 PRK06481 fumarate reductase fl 98.8 1.6E-07 3.6E-12 93.7 15.8 136 20-160 60-251 (506)
169 PF00070 Pyr_redox: Pyridine n 98.8 7.8E-08 1.7E-12 70.3 10.0 79 23-136 1-79 (80)
170 PF13450 NAD_binding_8: NAD(P) 98.8 1.1E-08 2.3E-13 71.9 5.2 49 26-74 1-49 (68)
171 PRK13800 putative oxidoreducta 98.8 1.3E-07 2.7E-12 100.6 15.3 36 20-55 12-47 (897)
172 COG0579 Predicted dehydrogenas 98.8 1.2E-07 2.7E-12 90.3 13.2 63 93-162 151-213 (429)
173 TIGR03329 Phn_aa_oxid putative 98.8 6.6E-08 1.4E-12 95.5 11.9 61 93-164 181-241 (460)
174 TIGR01373 soxB sarcosine oxida 98.7 1.4E-07 2.9E-12 92.0 13.6 61 93-161 181-241 (407)
175 TIGR01789 lycopene_cycl lycope 98.7 8.8E-08 1.9E-12 91.6 11.8 121 23-159 1-137 (370)
176 PRK11101 glpA sn-glycerol-3-ph 98.7 1.3E-07 2.8E-12 95.2 13.5 138 20-161 5-212 (546)
177 PLN02661 Putative thiazole syn 98.7 6.9E-08 1.5E-12 89.5 10.2 136 21-158 92-242 (357)
178 PRK08294 phenol 2-monooxygenas 98.7 2.8E-07 6.2E-12 94.1 15.5 143 20-162 31-212 (634)
179 PF00890 FAD_binding_2: FAD bi 98.7 2E-07 4.4E-12 91.1 13.8 136 23-161 1-204 (417)
180 PF01134 GIDA: Glucose inhibit 98.7 4.2E-08 9.1E-13 92.3 8.2 127 23-158 1-150 (392)
181 PRK01747 mnmC bifunctional tRN 98.7 1.1E-07 2.4E-12 98.1 12.1 62 92-163 405-466 (662)
182 PRK07804 L-aspartate oxidase; 98.7 3.4E-07 7.3E-12 92.1 15.2 143 19-161 14-211 (541)
183 PRK08274 tricarballylate dehyd 98.7 4.1E-07 8.8E-12 90.2 15.5 136 20-160 3-192 (466)
184 COG0029 NadB Aspartate oxidase 98.7 1.8E-07 3.9E-12 88.7 12.0 134 23-160 9-196 (518)
185 PRK08401 L-aspartate oxidase; 98.7 1.9E-07 4.1E-12 92.3 13.0 130 21-161 1-176 (466)
186 PRK05976 dihydrolipoamide dehy 98.7 3.9E-07 8.4E-12 90.4 15.2 140 21-204 180-323 (472)
187 PF00070 Pyr_redox: Pyridine n 98.7 2.3E-08 5E-13 73.1 4.9 38 193-231 1-38 (80)
188 PTZ00383 malate:quinone oxidor 98.7 2.2E-07 4.7E-12 91.6 12.8 60 93-161 209-274 (497)
189 TIGR03364 HpnW_proposed FAD de 98.7 2E-07 4.3E-12 89.5 12.3 34 22-55 1-34 (365)
190 TIGR01350 lipoamide_DH dihydro 98.7 4.8E-07 1E-11 89.6 15.3 136 21-202 170-310 (461)
191 PLN02464 glycerol-3-phosphate 98.7 2.9E-07 6.3E-12 93.8 13.6 67 93-161 230-297 (627)
192 TIGR00136 gidA glucose-inhibit 98.7 3.9E-07 8.4E-12 90.5 13.8 132 22-161 1-155 (617)
193 PRK06912 acoL dihydrolipoamide 98.7 7.8E-07 1.7E-11 87.9 16.1 102 21-165 170-271 (458)
194 TIGR03378 glycerol3P_GlpB glyc 98.7 5.2E-06 1.1E-10 79.3 20.7 33 22-54 1-33 (419)
195 COG0578 GlpA Glycerol-3-phosph 98.7 4.2E-07 9E-12 88.6 13.5 139 20-162 11-227 (532)
196 PRK04965 NADH:flavorubredoxin 98.7 4.7E-07 1E-11 87.2 13.9 100 21-163 141-240 (377)
197 PRK07121 hypothetical protein; 98.6 9E-07 1.9E-11 88.3 16.3 40 19-58 18-57 (492)
198 PRK13339 malate:quinone oxidor 98.6 4.9E-07 1.1E-11 88.9 13.8 67 93-162 182-249 (497)
199 PF04820 Trp_halogenase: Trypt 98.6 1.3E-07 2.8E-12 92.7 8.3 59 92-158 151-209 (454)
200 COG1249 Lpd Pyruvate/2-oxoglut 98.6 8.3E-07 1.8E-11 86.1 13.6 105 19-165 171-275 (454)
201 PRK07251 pyridine nucleotide-d 98.6 8.3E-07 1.8E-11 87.3 13.9 100 21-165 157-256 (438)
202 PLN02927 antheraxanthin epoxid 98.6 9.6E-07 2.1E-11 89.3 14.4 132 19-162 79-250 (668)
203 PRK06327 dihydrolipoamide dehy 98.6 3.1E-06 6.7E-11 84.1 17.9 105 21-165 183-287 (475)
204 PRK12839 hypothetical protein; 98.6 9.8E-07 2.1E-11 89.1 14.4 41 19-59 6-46 (572)
205 TIGR01320 mal_quin_oxido malat 98.6 8.9E-07 1.9E-11 87.5 13.6 67 93-162 176-242 (483)
206 KOG2415 Electron transfer flav 98.6 7E-07 1.5E-11 82.4 11.5 140 20-159 75-255 (621)
207 PRK09754 phenylpropionate diox 98.6 6.5E-07 1.4E-11 86.8 11.8 99 21-163 144-242 (396)
208 PRK06416 dihydrolipoamide dehy 98.5 2.2E-06 4.8E-11 84.9 15.7 104 21-165 172-275 (462)
209 PRK07818 dihydrolipoamide dehy 98.5 2.5E-06 5.4E-11 84.6 16.1 105 21-165 172-276 (466)
210 PRK08275 putative oxidoreducta 98.5 2.7E-06 6E-11 85.9 16.5 139 20-161 8-201 (554)
211 TIGR00551 nadB L-aspartate oxi 98.5 1.6E-06 3.4E-11 86.3 14.4 134 21-161 2-190 (488)
212 COG2081 Predicted flavoprotein 98.5 4.2E-07 9E-12 84.2 9.2 151 191-342 3-168 (408)
213 PRK07057 sdhA succinate dehydr 98.5 3.5E-06 7.6E-11 85.6 16.8 137 20-161 11-212 (591)
214 PRK06452 sdhA succinate dehydr 98.5 2.8E-06 6.1E-11 85.9 15.9 137 20-160 4-198 (566)
215 TIGR01812 sdhA_frdA_Gneg succi 98.5 2.1E-06 4.6E-11 87.1 15.1 135 23-161 1-192 (566)
216 TIGR02053 MerA mercuric reduct 98.5 2.1E-06 4.6E-11 85.0 14.3 104 21-165 166-269 (463)
217 PTZ00139 Succinate dehydrogena 98.5 2.9E-06 6.4E-11 86.5 15.6 139 20-161 28-230 (617)
218 PRK06175 L-aspartate oxidase; 98.5 2.1E-06 4.5E-11 84.0 14.0 38 20-58 3-40 (433)
219 PRK06370 mercuric reductase; V 98.5 3E-06 6.4E-11 84.0 15.2 104 21-165 171-274 (463)
220 PRK07573 sdhA succinate dehydr 98.5 2.4E-06 5.3E-11 87.4 14.9 37 20-56 34-70 (640)
221 PLN00128 Succinate dehydrogena 98.5 2.7E-06 5.8E-11 86.8 15.1 140 21-162 50-252 (635)
222 PRK00711 D-amino acid dehydrog 98.5 1.5E-06 3.2E-11 85.0 12.8 60 93-162 199-259 (416)
223 PRK06854 adenylylsulfate reduc 98.5 2.6E-06 5.6E-11 86.8 14.8 138 20-161 10-196 (608)
224 PRK05249 soluble pyridine nucl 98.5 1.7E-06 3.8E-11 85.6 13.3 100 21-164 175-274 (461)
225 PRK07803 sdhA succinate dehydr 98.5 2.4E-06 5.1E-11 87.4 14.5 38 20-57 7-44 (626)
226 COG1252 Ndh NADH dehydrogenase 98.5 1.1E-06 2.3E-11 83.3 11.1 131 22-200 156-300 (405)
227 PRK06263 sdhA succinate dehydr 98.5 2.5E-06 5.4E-11 86.1 14.5 136 20-160 6-197 (543)
228 COG0665 DadA Glycine/D-amino a 98.5 1.1E-06 2.3E-11 85.1 11.5 39 19-57 2-40 (387)
229 PRK05945 sdhA succinate dehydr 98.5 2.3E-06 5E-11 86.8 14.2 136 21-161 3-198 (575)
230 PRK09078 sdhA succinate dehydr 98.5 4.6E-06 1E-10 84.9 16.0 140 20-161 11-213 (598)
231 PRK07395 L-aspartate oxidase; 98.5 1.9E-06 4.1E-11 86.7 12.8 42 16-58 4-45 (553)
232 PRK08958 sdhA succinate dehydr 98.5 5.3E-06 1.2E-10 84.2 16.0 139 21-161 7-207 (588)
233 PRK06116 glutathione reductase 98.5 2.6E-06 5.6E-11 84.1 13.3 102 21-165 167-268 (450)
234 COG1233 Phytoene dehydrogenase 98.4 2.5E-07 5.4E-12 91.8 5.9 53 20-72 2-54 (487)
235 PRK12842 putative succinate de 98.4 3.8E-06 8.2E-11 85.3 14.4 39 20-58 8-46 (574)
236 PRK14694 putative mercuric red 98.4 3.2E-06 6.9E-11 83.8 13.3 99 21-165 178-276 (468)
237 PRK06134 putative FAD-binding 98.4 1E-05 2.2E-10 82.3 17.1 40 19-58 10-49 (581)
238 TIGR01424 gluta_reduc_2 glutat 98.4 3.2E-06 7E-11 83.3 13.1 100 21-164 166-265 (446)
239 TIGR01421 gluta_reduc_1 glutat 98.4 4.1E-06 8.8E-11 82.5 13.8 103 21-165 166-268 (450)
240 PRK07846 mycothione reductase; 98.4 5.3E-06 1.1E-10 81.7 14.5 100 21-165 166-265 (451)
241 PRK13977 myosin-cross-reactive 98.4 1.7E-06 3.7E-11 85.3 10.6 42 20-61 21-66 (576)
242 PRK12835 3-ketosteroid-delta-1 98.4 8.8E-06 1.9E-10 82.5 16.1 40 19-58 9-48 (584)
243 PRK09564 coenzyme A disulfide 98.4 2.8E-06 6.1E-11 83.7 12.3 99 21-163 149-247 (444)
244 PRK09231 fumarate reductase fl 98.4 5.3E-06 1.1E-10 84.2 14.4 39 20-58 3-43 (582)
245 COG0445 GidA Flavin-dependent 98.4 8.8E-07 1.9E-11 84.9 8.1 132 21-160 4-158 (621)
246 PLN02507 glutathione reductase 98.4 4.3E-06 9.3E-11 83.3 13.4 101 21-165 203-303 (499)
247 KOG1298 Squalene monooxygenase 98.4 2.3E-06 5E-11 78.3 10.3 141 17-162 41-210 (509)
248 PRK08641 sdhA succinate dehydr 98.4 8.9E-06 1.9E-10 82.6 15.9 37 21-57 3-39 (589)
249 PRK06115 dihydrolipoamide dehy 98.4 5.5E-06 1.2E-10 82.0 14.0 105 21-164 174-278 (466)
250 PRK07845 flavoprotein disulfid 98.4 4.6E-06 1E-10 82.5 13.5 101 21-165 177-277 (466)
251 PRK06069 sdhA succinate dehydr 98.4 5.4E-06 1.2E-10 84.3 14.2 39 20-58 4-45 (577)
252 PRK08205 sdhA succinate dehydr 98.4 8.7E-06 1.9E-10 82.7 15.7 67 93-161 138-207 (583)
253 PRK08071 L-aspartate oxidase; 98.4 3E-06 6.6E-11 84.6 12.2 37 21-58 3-39 (510)
254 PRK14727 putative mercuric red 98.4 4.7E-06 1E-10 82.8 13.5 98 21-164 188-285 (479)
255 PLN02815 L-aspartate oxidase 98.4 6.5E-06 1.4E-10 83.3 14.5 38 20-58 28-65 (594)
256 PTZ00367 squalene epoxidase; P 98.4 2.6E-06 5.6E-11 85.5 11.2 36 19-54 31-66 (567)
257 TIGR01811 sdhA_Bsu succinate d 98.4 9.2E-06 2E-10 82.6 15.2 33 24-56 1-33 (603)
258 PRK12845 3-ketosteroid-delta-1 98.4 1.3E-05 2.8E-10 80.9 16.0 40 19-59 14-53 (564)
259 TIGR03385 CoA_CoA_reduc CoA-di 98.4 3.9E-06 8.5E-11 82.3 12.1 99 21-164 137-235 (427)
260 PRK14989 nitrite reductase sub 98.4 6.9E-06 1.5E-10 86.4 14.4 103 21-164 145-247 (847)
261 PRK05257 malate:quinone oxidor 98.4 3.8E-06 8.2E-11 83.2 11.8 65 95-162 183-248 (494)
262 PRK06467 dihydrolipoamide dehy 98.4 6.9E-06 1.5E-10 81.4 13.7 104 21-165 174-277 (471)
263 PRK12837 3-ketosteroid-delta-1 98.4 5.3E-06 1.1E-10 83.1 12.9 39 19-58 5-43 (513)
264 PRK08010 pyridine nucleotide-d 98.3 6.2E-06 1.4E-10 81.2 13.2 99 21-164 158-256 (441)
265 PRK12844 3-ketosteroid-delta-1 98.3 1.8E-05 3.9E-10 79.9 16.7 40 19-58 4-43 (557)
266 PRK13748 putative mercuric red 98.3 5.6E-06 1.2E-10 84.2 13.2 99 21-165 270-368 (561)
267 PRK08255 salicylyl-CoA 5-hydro 98.3 1.5E-06 3.2E-11 91.0 9.0 118 23-161 2-142 (765)
268 PRK06292 dihydrolipoamide dehy 98.3 1.7E-05 3.7E-10 78.6 16.1 103 21-165 169-271 (460)
269 PRK07208 hypothetical protein; 98.3 1.3E-06 2.8E-11 87.0 8.1 48 20-67 3-50 (479)
270 TIGR01176 fum_red_Fp fumarate 98.3 1.1E-05 2.4E-10 81.7 14.8 38 21-58 3-42 (580)
271 TIGR03452 mycothione_red mycot 98.3 1.3E-05 2.7E-10 79.1 14.9 99 21-164 169-267 (452)
272 PRK13512 coenzyme A disulfide 98.3 3.6E-06 7.8E-11 82.7 11.0 96 21-164 148-243 (438)
273 KOG1335 Dihydrolipoamide dehyd 98.3 3.9E-06 8.4E-11 76.8 10.2 152 20-214 210-367 (506)
274 PRK12843 putative FAD-binding 98.3 2.8E-05 6E-10 79.0 17.3 42 19-60 14-55 (578)
275 PTZ00306 NADH-dependent fumara 98.3 1.6E-05 3.4E-10 86.9 16.3 40 19-58 407-446 (1167)
276 TIGR01438 TGR thioredoxin and 98.3 1E-05 2.2E-10 80.4 13.6 102 21-164 180-281 (484)
277 PF06039 Mqo: Malate:quinone o 98.3 1.1E-05 2.3E-10 76.6 12.8 64 96-162 182-246 (488)
278 PTZ00052 thioredoxin reductase 98.3 9.7E-06 2.1E-10 80.8 13.3 100 21-165 182-281 (499)
279 KOG2614 Kynurenine 3-monooxyge 98.3 1.9E-06 4.2E-11 80.0 7.5 36 21-56 2-37 (420)
280 TIGR02374 nitri_red_nirB nitri 98.3 5.6E-06 1.2E-10 86.9 11.4 101 21-164 140-240 (785)
281 PTZ00058 glutathione reductase 98.3 1.3E-05 2.8E-10 80.5 13.4 102 21-164 237-338 (561)
282 PRK07843 3-ketosteroid-delta-1 98.3 3.2E-05 7E-10 78.2 16.2 39 20-58 6-44 (557)
283 TIGR01423 trypano_reduc trypan 98.2 3.1E-05 6.7E-10 76.8 15.1 101 21-164 187-290 (486)
284 PRK09077 L-aspartate oxidase; 98.2 2.8E-05 6.1E-10 78.3 14.9 39 19-58 6-44 (536)
285 COG0446 HcaD Uncharacterized N 98.2 1.9E-05 4.1E-10 77.0 13.5 102 21-163 136-238 (415)
286 PRK08626 fumarate reductase fl 98.2 2.5E-05 5.3E-10 80.3 14.7 38 20-57 4-41 (657)
287 KOG0029 Amine oxidase [Seconda 98.2 1.4E-06 3.1E-11 85.6 5.3 41 19-59 13-53 (501)
288 TIGR02061 aprA adenosine phosp 98.2 3.3E-05 7.2E-10 78.3 15.1 33 23-55 1-37 (614)
289 PRK12834 putative FAD-binding 98.2 2.4E-05 5.1E-10 79.2 14.0 39 20-58 3-43 (549)
290 TIGR02485 CobZ_N-term precorri 98.2 1.5E-05 3.2E-10 78.3 12.0 61 94-160 122-183 (432)
291 PTZ00318 NADH dehydrogenase-li 98.2 2.9E-05 6.4E-10 75.9 13.6 91 22-158 174-278 (424)
292 PRK07512 L-aspartate oxidase; 98.2 2.2E-05 4.8E-10 78.5 12.8 62 93-160 134-197 (513)
293 KOG2404 Fumarate reductase, fl 98.1 2.5E-05 5.4E-10 70.0 10.7 38 21-58 9-46 (477)
294 COG1231 Monoamine oxidase [Ami 98.1 2.7E-05 5.8E-10 73.6 11.4 41 19-59 5-45 (450)
295 PRK11883 protoporphyrinogen ox 98.1 2.9E-06 6.4E-11 83.8 5.4 46 22-67 1-48 (451)
296 PTZ00153 lipoamide dehydrogena 98.1 4.8E-05 1E-09 77.7 13.9 110 21-165 312-430 (659)
297 TIGR01292 TRX_reduct thioredox 98.1 1.8E-05 4E-10 73.5 10.1 32 193-224 2-33 (300)
298 PLN02576 protoporphyrinogen ox 98.1 5.6E-06 1.2E-10 82.9 6.6 44 19-62 10-54 (496)
299 COG0562 Glf UDP-galactopyranos 98.1 8.9E-06 1.9E-10 73.0 6.9 78 21-108 1-78 (374)
300 TIGR02733 desat_CrtD C-3',4' d 98.1 5.2E-06 1.1E-10 83.0 6.2 50 22-71 2-51 (492)
301 TIGR00031 UDP-GALP_mutase UDP- 98.1 4.2E-06 9E-11 79.5 5.1 42 21-62 1-42 (377)
302 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 1.2E-05 2.6E-10 77.2 8.1 35 23-57 2-36 (433)
303 TIGR00562 proto_IX_ox protopor 98.1 5.4E-06 1.2E-10 82.2 5.9 43 21-63 2-48 (462)
304 PRK07233 hypothetical protein; 98.1 4.7E-06 1E-10 81.9 5.4 40 23-62 1-40 (434)
305 PLN02546 glutathione reductase 98.0 7.1E-05 1.5E-09 75.3 13.2 101 21-164 252-352 (558)
306 KOG2311 NAD/FAD-utilizing prot 98.0 2.3E-05 5E-10 73.8 8.9 35 19-53 26-60 (679)
307 TIGR02730 carot_isom carotene 98.0 6.8E-06 1.5E-10 82.1 5.9 41 22-62 1-41 (493)
308 COG1232 HemY Protoporphyrinoge 98.0 1E-05 2.3E-10 77.8 6.8 49 23-71 2-52 (444)
309 PLN02268 probable polyamine ox 98.0 6.7E-06 1.5E-10 80.8 5.7 40 22-61 1-40 (435)
310 KOG2495 NADH-dehydrogenase (ub 98.0 2.4E-05 5.3E-10 72.9 8.7 137 21-201 218-369 (491)
311 TIGR02734 crtI_fam phytoene de 98.0 8.2E-06 1.8E-10 81.8 5.8 39 24-62 1-39 (502)
312 KOG1336 Monodehydroascorbate/f 98.0 5E-05 1.1E-09 72.0 10.3 107 21-168 213-319 (478)
313 PLN02676 polyamine oxidase 98.0 1.3E-05 2.8E-10 79.6 6.6 49 19-67 24-73 (487)
314 COG1053 SdhA Succinate dehydro 98.0 8.3E-05 1.8E-09 74.4 12.3 39 19-57 4-42 (562)
315 PRK10262 thioredoxin reductase 98.0 7.6E-05 1.6E-09 70.2 11.4 105 21-164 146-250 (321)
316 COG3349 Uncharacterized conser 97.9 9.4E-06 2E-10 78.0 4.8 38 22-59 1-38 (485)
317 PRK12416 protoporphyrinogen ox 97.9 1E-05 2.2E-10 80.3 5.2 43 21-63 1-49 (463)
318 PLN02568 polyamine oxidase 97.9 1.6E-05 3.5E-10 79.6 5.8 44 20-63 4-52 (539)
319 PF01134 GIDA: Glucose inhibit 97.9 3.4E-05 7.3E-10 73.0 7.4 140 193-339 1-150 (392)
320 TIGR03140 AhpF alkyl hydropero 97.9 0.00014 3E-09 73.0 12.3 101 21-165 352-453 (515)
321 KOG2844 Dimethylglycine dehydr 97.9 5.2E-05 1.1E-09 74.4 8.6 60 92-160 184-243 (856)
322 TIGR02731 phytoene_desat phyto 97.8 1.9E-05 4.2E-10 78.1 5.4 39 23-61 1-39 (453)
323 PRK05335 tRNA (uracil-5-)-meth 97.8 2E-05 4.3E-10 75.3 5.1 37 20-56 1-37 (436)
324 COG2509 Uncharacterized FAD-de 97.8 0.00016 3.4E-09 68.3 10.8 59 94-160 172-230 (486)
325 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00013 2.7E-09 70.1 10.6 94 21-163 145-244 (364)
326 PLN02529 lysine-specific histo 97.8 3E-05 6.6E-10 79.6 5.9 42 20-61 159-200 (738)
327 TIGR01316 gltA glutamate synth 97.8 0.00076 1.6E-08 66.5 15.2 104 21-164 272-389 (449)
328 KOG2852 Possible oxidoreductas 97.8 0.00016 3.6E-09 64.0 9.1 40 19-58 8-53 (380)
329 PTZ00363 rab-GDP dissociation 97.8 2.5E-05 5.5E-10 76.0 4.6 44 20-63 3-46 (443)
330 KOG0042 Glycerol-3-phosphate d 97.7 4.3E-05 9.4E-10 73.2 5.7 41 20-60 66-106 (680)
331 PRK04176 ribulose-1,5-biphosph 97.7 4.9E-05 1.1E-09 68.7 5.5 190 190-403 24-256 (257)
332 PRK12779 putative bifunctional 97.7 7.6E-05 1.7E-09 79.5 7.7 36 189-224 304-339 (944)
333 COG3573 Predicted oxidoreducta 97.7 0.00049 1.1E-08 62.3 11.4 39 20-58 4-44 (552)
334 PRK12770 putative glutamate sy 97.7 0.00021 4.5E-09 68.2 9.9 101 22-163 173-287 (352)
335 PF03486 HI0933_like: HI0933-l 97.7 2.8E-05 6.1E-10 74.9 3.8 139 193-342 2-167 (409)
336 PRK06847 hypothetical protein; 97.7 0.00014 3.1E-09 70.0 8.4 146 191-343 4-165 (375)
337 TIGR00292 thiazole biosynthesi 97.7 6.7E-05 1.4E-09 67.7 5.6 190 190-401 20-253 (254)
338 KOG0685 Flavin-containing amin 97.6 5.9E-05 1.3E-09 71.5 4.9 42 21-62 21-63 (498)
339 TIGR02732 zeta_caro_desat caro 97.6 6E-05 1.3E-09 74.7 5.1 39 23-61 1-39 (474)
340 COG2907 Predicted NAD/FAD-bind 97.6 0.00014 3.1E-09 66.1 6.8 42 20-62 7-48 (447)
341 PRK15317 alkyl hydroperoxide r 97.6 0.00052 1.1E-08 69.0 11.6 100 21-164 351-451 (517)
342 PRK06834 hypothetical protein; 97.6 0.00017 3.7E-09 71.8 7.9 147 192-342 4-157 (488)
343 PRK01438 murD UDP-N-acetylmura 97.6 0.00018 3.8E-09 71.7 7.9 34 21-54 16-49 (480)
344 PRK12831 putative oxidoreducta 97.6 0.0015 3.1E-08 64.7 14.0 105 20-164 280-398 (464)
345 PLN02487 zeta-carotene desatur 97.6 8.2E-05 1.8E-09 74.7 5.1 42 20-61 74-115 (569)
346 PLN02328 lysine-specific histo 97.6 9.5E-05 2.1E-09 76.5 5.5 43 20-62 237-279 (808)
347 PLN02463 lycopene beta cyclase 97.6 0.00031 6.8E-09 68.7 8.7 136 192-342 29-170 (447)
348 COG3075 GlpB Anaerobic glycero 97.5 9.7E-05 2.1E-09 66.6 4.5 34 20-53 1-34 (421)
349 PRK09853 putative selenate red 97.5 0.00022 4.8E-09 75.3 7.8 36 189-224 537-572 (1019)
350 TIGR02462 pyranose_ox pyranose 97.5 0.00011 2.4E-09 73.1 5.1 39 22-60 1-39 (544)
351 PF07992 Pyr_redox_2: Pyridine 97.5 0.0001 2.2E-09 64.1 4.0 32 193-224 1-32 (201)
352 PF13434 K_oxygenase: L-lysine 97.5 0.00056 1.2E-08 64.5 8.7 132 19-157 188-338 (341)
353 PRK12778 putative bifunctional 97.4 0.0029 6.2E-08 66.7 14.8 104 21-164 570-688 (752)
354 PRK08773 2-octaprenyl-3-methyl 97.4 0.00026 5.7E-09 68.6 6.6 151 191-343 6-171 (392)
355 COG0654 UbiH 2-polyprenyl-6-me 97.4 0.00025 5.5E-09 68.5 6.1 146 191-341 2-162 (387)
356 PLN02976 amine oxidase 97.4 0.00018 4E-09 77.4 5.4 44 20-63 692-735 (1713)
357 PRK07236 hypothetical protein; 97.4 0.00025 5.4E-09 68.6 5.9 35 190-224 5-39 (386)
358 PRK11749 dihydropyrimidine deh 97.4 0.0016 3.5E-08 64.4 11.7 103 21-163 273-388 (457)
359 PLN02612 phytoene desaturase 97.4 0.0002 4.4E-09 72.5 5.4 40 20-59 92-131 (567)
360 PLN03000 amine oxidase 97.4 0.00022 4.7E-09 74.1 5.6 44 20-63 183-226 (881)
361 PRK05868 hypothetical protein; 97.4 0.00057 1.2E-08 65.7 8.3 34 192-225 2-35 (372)
362 PLN02661 Putative thiazole syn 97.4 0.0018 4E-08 60.5 11.0 38 187-224 88-126 (357)
363 KOG2853 Possible oxidoreductas 97.4 0.0021 4.6E-08 58.5 10.9 35 20-54 85-123 (509)
364 KOG2665 Predicted FAD-dependen 97.4 0.0012 2.6E-08 59.4 9.2 41 17-57 44-86 (453)
365 PF06100 Strep_67kDa_ant: Stre 97.4 0.0013 2.9E-08 63.4 10.2 41 21-61 2-46 (500)
366 PRK09126 hypothetical protein; 97.4 0.00066 1.4E-08 65.8 8.5 34 192-225 4-37 (392)
367 PRK05192 tRNA uridine 5-carbox 97.4 0.00082 1.8E-08 67.4 9.1 33 192-224 5-37 (618)
368 KOG1346 Programmed cell death 97.4 0.00052 1.1E-08 63.9 7.1 102 19-164 345-451 (659)
369 PRK12814 putative NADPH-depend 97.3 0.0069 1.5E-07 62.6 15.9 103 20-163 322-438 (652)
370 TIGR03143 AhpF_homolog putativ 97.3 0.0013 2.7E-08 66.7 10.4 100 21-164 143-248 (555)
371 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00014 3.1E-09 67.5 3.3 34 22-55 1-35 (296)
372 PRK05714 2-octaprenyl-3-methyl 97.3 0.0011 2.3E-08 64.6 9.3 33 192-224 3-35 (405)
373 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.00021 4.5E-09 61.0 3.6 38 187-224 26-63 (262)
374 PLN02852 ferredoxin-NADP+ redu 97.3 0.00067 1.5E-08 66.9 7.4 35 190-224 25-61 (491)
375 TIGR01789 lycopene_cycl lycope 97.3 0.00035 7.6E-09 66.9 5.1 32 193-224 1-34 (370)
376 PRK12810 gltD glutamate syntha 97.2 0.0032 7E-08 62.5 11.5 112 21-163 281-401 (471)
377 PRK08163 salicylate hydroxylas 97.2 0.00058 1.3E-08 66.3 6.1 34 191-224 4-37 (396)
378 PF13738 Pyr_redox_3: Pyridine 97.2 0.00045 9.7E-09 60.2 4.8 30 195-224 1-31 (203)
379 TIGR03315 Se_ygfK putative sel 97.2 0.00064 1.4E-08 72.2 6.5 35 190-224 536-570 (1012)
380 PRK10157 putative oxidoreducta 97.2 0.00062 1.3E-08 66.7 6.0 147 192-341 6-164 (428)
381 PRK08244 hypothetical protein; 97.2 0.001 2.2E-08 66.6 7.6 34 192-225 3-36 (493)
382 PRK06567 putative bifunctional 97.1 0.00099 2.2E-08 69.8 7.2 36 189-224 381-416 (1028)
383 TIGR01318 gltD_gamma_fam gluta 97.1 0.017 3.7E-07 57.2 15.7 103 21-163 282-399 (467)
384 PRK07333 2-octaprenyl-6-methox 97.1 0.0011 2.3E-08 64.6 7.0 145 193-342 3-168 (403)
385 KOG1399 Flavin-containing mono 97.1 0.0028 6.1E-08 61.6 9.5 35 190-224 5-39 (448)
386 TIGR01372 soxA sarcosine oxida 97.1 0.0046 9.9E-08 67.0 11.9 96 21-164 317-413 (985)
387 TIGR01984 UbiH 2-polyprenyl-6- 97.1 0.00084 1.8E-08 64.8 5.8 32 193-224 1-33 (382)
388 PRK12769 putative oxidoreducta 97.1 0.016 3.4E-07 60.2 15.4 104 21-163 468-585 (654)
389 PRK07364 2-octaprenyl-6-methox 97.1 0.0019 4.1E-08 63.1 8.2 35 191-225 18-52 (415)
390 PRK06184 hypothetical protein; 97.1 0.002 4.4E-08 64.6 8.5 33 192-224 4-36 (502)
391 TIGR00136 gidA glucose-inhibit 97.1 0.0022 4.7E-08 64.3 8.4 32 193-224 2-33 (617)
392 PRK12775 putative trifunctiona 97.0 0.00097 2.1E-08 71.9 6.1 35 190-224 429-463 (1006)
393 TIGR01790 carotene-cycl lycope 97.0 0.0023 5.1E-08 61.8 8.4 134 193-341 1-141 (388)
394 TIGR01988 Ubi-OHases Ubiquinon 97.0 0.0011 2.4E-08 64.0 6.0 32 193-224 1-32 (385)
395 KOG1276 Protoporphyrinogen oxi 97.0 0.00078 1.7E-08 63.1 4.6 43 20-62 10-54 (491)
396 KOG3855 Monooxygenase involved 97.0 0.0094 2E-07 55.9 11.5 35 19-53 34-72 (481)
397 PRK07608 ubiquinone biosynthes 97.0 0.0012 2.5E-08 64.0 5.9 34 192-225 6-39 (388)
398 COG2072 TrkA Predicted flavopr 97.0 0.0063 1.4E-07 59.7 10.6 34 191-224 8-42 (443)
399 TIGR00275 flavoprotein, HI0933 96.9 0.0023 5.1E-08 62.0 7.4 30 195-224 1-30 (400)
400 PRK06753 hypothetical protein; 96.9 0.0027 5.9E-08 61.0 7.8 33 193-225 2-34 (373)
401 PRK08849 2-octaprenyl-3-methyl 96.9 0.0018 3.9E-08 62.5 6.5 33 192-224 4-36 (384)
402 PRK06617 2-octaprenyl-6-methox 96.9 0.00089 1.9E-08 64.4 4.3 32 193-224 3-34 (374)
403 PRK08850 2-octaprenyl-6-methox 96.9 0.0022 4.8E-08 62.4 7.1 32 192-223 5-36 (405)
404 PF13454 NAD_binding_9: FAD-NA 96.9 0.0021 4.5E-08 53.5 5.8 30 195-224 1-35 (156)
405 TIGR01317 GOGAT_sm_gam glutama 96.9 0.0016 3.4E-08 64.8 5.9 35 190-224 142-176 (485)
406 PRK09897 hypothetical protein; 96.9 0.0061 1.3E-07 60.9 9.7 33 192-224 2-36 (534)
407 KOG4716 Thioredoxin reductase 96.8 0.0028 6.1E-08 57.6 6.4 110 11-158 189-298 (503)
408 PRK08013 oxidoreductase; Provi 96.8 0.0025 5.3E-08 62.0 6.6 34 192-225 4-37 (400)
409 PRK08020 ubiF 2-octaprenyl-3-m 96.8 0.0025 5.4E-08 61.7 6.6 33 192-224 6-38 (391)
410 PRK02106 choline dehydrogenase 96.8 0.0012 2.6E-08 67.1 4.5 35 20-54 4-39 (560)
411 TIGR02032 GG-red-SF geranylger 96.8 0.0014 2.9E-08 60.7 4.5 32 193-224 2-33 (295)
412 KOG2960 Protein involved in th 96.8 0.00033 7E-09 59.2 0.2 43 21-63 76-121 (328)
413 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0019 4.2E-08 58.4 5.0 37 21-57 3-39 (439)
414 PRK07588 hypothetical protein; 96.8 0.0032 7E-08 61.0 7.0 32 193-224 2-33 (391)
415 PF05834 Lycopene_cycl: Lycope 96.8 0.0025 5.5E-08 61.3 6.2 134 193-342 1-143 (374)
416 KOG0399 Glutamate synthase [Am 96.8 0.0041 8.8E-08 64.9 7.6 38 187-224 1781-1818(2142)
417 PRK07190 hypothetical protein; 96.8 0.0046 9.9E-08 61.6 8.1 33 192-224 6-38 (487)
418 PRK07045 putative monooxygenas 96.8 0.005 1.1E-07 59.6 8.2 34 192-225 6-39 (388)
419 PF01266 DAO: FAD dependent ox 96.8 0.0042 9.1E-08 59.0 7.5 32 193-224 1-32 (358)
420 PRK01438 murD UDP-N-acetylmura 96.8 0.0033 7.2E-08 62.7 7.0 35 190-224 15-49 (480)
421 PLN02697 lycopene epsilon cycl 96.7 0.0041 8.8E-08 62.1 7.3 132 192-341 109-248 (529)
422 PLN02785 Protein HOTHEAD 96.7 0.002 4.2E-08 65.5 5.1 35 19-54 53-87 (587)
423 PRK10015 oxidoreductase; Provi 96.7 0.0019 4.1E-08 63.3 4.4 34 192-225 6-39 (429)
424 COG4529 Uncharacterized protei 96.7 0.013 2.7E-07 56.5 9.6 148 192-344 2-167 (474)
425 PLN00093 geranylgeranyl diphos 96.6 0.019 4.2E-07 56.5 10.9 35 190-224 38-72 (450)
426 COG1251 NirB NAD(P)H-nitrite r 96.6 0.004 8.8E-08 62.5 6.0 101 21-164 145-245 (793)
427 PF12831 FAD_oxidored: FAD dep 96.6 0.0013 2.9E-08 64.3 2.6 34 193-227 1-34 (428)
428 COG2303 BetA Choline dehydroge 96.5 0.0022 4.9E-08 64.5 4.1 35 19-53 5-39 (542)
429 COG0644 FixC Dehydrogenases (f 96.5 0.0031 6.7E-08 61.2 4.9 137 192-341 4-152 (396)
430 PRK06475 salicylate hydroxylas 96.5 0.0047 1E-07 60.0 6.0 33 192-224 3-35 (400)
431 COG0445 GidA Flavin-dependent 96.5 0.0027 5.9E-08 61.6 4.1 41 192-232 5-45 (621)
432 PRK12809 putative oxidoreducta 96.5 0.1 2.3E-06 53.9 16.0 103 20-162 450-567 (639)
433 KOG4254 Phytoene desaturase [C 96.5 0.0026 5.6E-08 60.1 3.7 40 19-58 12-51 (561)
434 PRK11728 hydroxyglutarate oxid 96.5 0.0054 1.2E-07 59.5 6.1 33 192-224 3-37 (393)
435 TIGR02023 BchP-ChlP geranylger 96.5 0.0075 1.6E-07 58.3 7.1 31 193-223 2-32 (388)
436 PRK07494 2-octaprenyl-6-methox 96.5 0.0088 1.9E-07 57.8 7.5 33 192-224 8-40 (388)
437 COG0492 TrxB Thioredoxin reduc 96.4 0.033 7.2E-07 51.6 10.8 98 20-164 142-240 (305)
438 TIGR03364 HpnW_proposed FAD de 96.4 0.041 8.9E-07 52.7 11.9 32 193-224 2-33 (365)
439 PRK05732 2-octaprenyl-6-methox 96.4 0.007 1.5E-07 58.7 6.6 32 192-223 4-38 (395)
440 PRK06183 mhpA 3-(3-hydroxyphen 96.4 0.0081 1.8E-07 60.8 7.2 34 191-224 10-43 (538)
441 TIGR01470 cysG_Nterm siroheme 96.4 0.006 1.3E-07 53.1 5.3 36 189-224 7-42 (205)
442 TIGR01810 betA choline dehydro 96.4 0.0029 6.3E-08 63.9 3.9 32 23-54 1-33 (532)
443 PF01494 FAD_binding_3: FAD bi 96.4 0.0016 3.6E-08 61.8 2.0 33 193-225 3-35 (356)
444 TIGR03219 salicylate_mono sali 96.3 0.0092 2E-07 58.3 7.0 32 193-224 2-34 (414)
445 TIGR02028 ChlP geranylgeranyl 96.3 0.0058 1.3E-07 59.3 5.5 32 193-224 2-33 (398)
446 KOG0405 Pyridine nucleotide-di 96.3 0.017 3.6E-07 53.0 7.8 102 20-164 188-289 (478)
447 PTZ00188 adrenodoxin reductase 96.3 0.0081 1.8E-07 58.7 6.2 36 190-225 38-74 (506)
448 COG0493 GltD NADPH-dependent g 96.3 0.0051 1.1E-07 60.1 4.7 36 189-224 121-156 (457)
449 PLN02172 flavin-containing mon 96.3 0.012 2.5E-07 58.2 7.3 34 21-54 204-237 (461)
450 TIGR01989 COQ6 Ubiquinone bios 96.2 0.0058 1.3E-07 60.1 4.9 32 193-224 2-37 (437)
451 PRK13984 putative oxidoreducta 96.2 0.16 3.5E-06 52.2 15.6 31 21-51 418-454 (604)
452 PRK06126 hypothetical protein; 96.2 0.015 3.3E-07 58.9 8.0 34 191-224 7-40 (545)
453 KOG2311 NAD/FAD-utilizing prot 96.2 0.02 4.3E-07 54.7 7.8 37 192-228 29-65 (679)
454 PRK02705 murD UDP-N-acetylmura 96.2 0.0045 9.7E-08 61.4 3.8 32 23-54 2-33 (459)
455 KOG2755 Oxidoreductase [Genera 96.1 0.012 2.5E-07 51.8 5.6 31 194-224 2-34 (334)
456 TIGR03862 flavo_PP4765 unchara 96.1 0.03 6.4E-07 53.4 9.0 58 93-160 84-141 (376)
457 PRK08401 L-aspartate oxidase; 96.1 0.058 1.3E-06 53.5 11.5 33 192-224 2-34 (466)
458 PRK08243 4-hydroxybenzoate 3-m 96.1 0.016 3.4E-07 56.2 7.3 33 192-224 3-35 (392)
459 PF04820 Trp_halogenase: Trypt 96.1 0.0098 2.1E-07 58.6 5.9 53 290-342 153-212 (454)
460 KOG2614 Kynurenine 3-monooxyge 96.1 0.015 3.2E-07 54.8 6.4 34 191-224 2-35 (420)
461 PRK11445 putative oxidoreducta 96.1 0.0079 1.7E-07 57.3 4.9 31 193-224 3-33 (351)
462 COG3486 IucD Lysine/ornithine 96.0 0.1 2.2E-06 49.2 11.5 135 22-165 188-343 (436)
463 PRK05329 anaerobic glycerol-3- 96.0 0.061 1.3E-06 52.3 10.6 93 25-158 219-316 (422)
464 PRK12771 putative glutamate sy 96.0 0.2 4.3E-06 51.1 14.8 102 21-163 267-381 (564)
465 PLN02927 antheraxanthin epoxid 96.0 0.018 3.9E-07 58.9 7.2 36 189-224 79-114 (668)
466 TIGR02360 pbenz_hydroxyl 4-hyd 96.0 0.017 3.6E-07 55.9 6.7 34 192-225 3-36 (390)
467 PRK07538 hypothetical protein; 96.0 0.016 3.4E-07 56.6 6.5 32 193-224 2-33 (413)
468 PRK06718 precorrin-2 dehydroge 95.9 0.017 3.6E-07 50.2 5.7 35 189-223 8-42 (202)
469 PRK08132 FAD-dependent oxidore 95.9 0.021 4.5E-07 58.0 7.2 34 191-224 23-56 (547)
470 PRK05562 precorrin-2 dehydroge 95.9 0.019 4.1E-07 50.3 5.7 36 189-224 23-58 (223)
471 PRK06185 hypothetical protein; 95.8 0.018 3.8E-07 56.1 6.2 34 191-224 6-39 (407)
472 PRK06481 fumarate reductase fl 95.7 0.11 2.3E-06 52.2 11.3 34 191-224 61-94 (506)
473 PF00996 GDI: GDP dissociation 95.6 0.017 3.6E-07 56.0 4.8 46 19-64 2-47 (438)
474 KOG1238 Glucose dehydrogenase/ 95.6 0.013 2.9E-07 58.2 4.1 38 19-56 55-93 (623)
475 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.012 2.7E-07 48.8 3.3 32 23-54 1-32 (157)
476 PRK06996 hypothetical protein; 95.5 0.01 2.3E-07 57.6 3.2 34 191-224 11-48 (398)
477 PF13450 NAD_binding_8: NAD(P) 95.3 0.013 2.8E-07 41.0 2.3 29 196-224 1-29 (68)
478 PF02558 ApbA: Ketopantoate re 95.3 0.017 3.7E-07 47.6 3.4 72 194-337 1-75 (151)
479 COG0569 TrkA K+ transport syst 95.3 0.022 4.7E-07 50.4 4.2 33 22-54 1-33 (225)
480 PRK08255 salicylyl-CoA 5-hydro 95.2 0.032 7E-07 58.9 6.0 32 193-224 2-35 (765)
481 COG1148 HdrA Heterodisulfide r 95.2 0.03 6.6E-07 53.7 5.0 34 191-224 124-157 (622)
482 PRK08274 tricarballylate dehyd 95.2 0.12 2.5E-06 51.5 9.5 33 192-224 5-37 (466)
483 TIGR00551 nadB L-aspartate oxi 95.1 0.17 3.7E-06 50.6 10.4 32 192-224 3-34 (488)
484 PRK06175 L-aspartate oxidase; 94.9 0.26 5.6E-06 48.4 10.9 32 192-224 5-36 (433)
485 PF02737 3HCDH_N: 3-hydroxyacy 94.9 0.03 6.4E-07 47.7 3.8 32 23-54 1-32 (180)
486 KOG3851 Sulfide:quinone oxidor 94.9 0.073 1.6E-06 48.4 6.2 37 188-224 36-74 (446)
487 PF00743 FMO-like: Flavin-bind 94.9 0.067 1.4E-06 53.7 6.7 34 20-53 182-215 (531)
488 PRK08294 phenol 2-monooxygenas 94.8 0.087 1.9E-06 54.3 7.7 35 191-225 32-67 (634)
489 TIGR03197 MnmC_Cterm tRNA U-34 94.8 0.075 1.6E-06 51.2 6.8 62 92-163 132-193 (381)
490 PRK05335 tRNA (uracil-5-)-meth 94.8 0.025 5.5E-07 54.4 3.4 34 192-225 3-36 (436)
491 PF13241 NAD_binding_7: Putati 94.6 0.026 5.5E-07 43.2 2.3 33 21-53 7-39 (103)
492 COG1893 ApbA Ketopantoate redu 94.5 0.077 1.7E-06 49.3 5.9 32 193-224 2-33 (307)
493 COG0579 Predicted dehydrogenas 94.5 0.083 1.8E-06 51.0 6.1 33 192-224 4-38 (429)
494 TIGR01470 cysG_Nterm siroheme 94.4 0.058 1.3E-06 46.9 4.6 34 21-54 9-42 (205)
495 PF01488 Shikimate_DH: Shikima 94.4 0.073 1.6E-06 42.9 4.7 35 20-54 11-46 (135)
496 PRK06719 precorrin-2 dehydroge 94.4 0.056 1.2E-06 44.8 4.1 34 20-53 12-45 (157)
497 PRK06854 adenylylsulfate reduc 94.4 0.49 1.1E-05 48.6 11.8 33 192-224 12-46 (608)
498 PF01593 Amino_oxidase: Flavin 94.3 0.052 1.1E-06 52.9 4.4 41 31-71 1-43 (450)
499 PF13241 NAD_binding_7: Putati 94.2 0.032 6.8E-07 42.7 2.2 36 189-224 5-40 (103)
500 PF00899 ThiF: ThiF family; I 94.2 0.057 1.2E-06 43.5 3.9 34 21-54 2-36 (135)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=6.6e-43 Score=343.34 Aligned_cols=372 Identities=32% Similarity=0.528 Sum_probs=223.9
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc---------ccCCceeecCCCccccCCCCCCCCCCCCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK---------RTYDRLNLHLPKQFCQLPKLQFPEDFPEYP 92 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (423)
++|+|||||++||++|..|.+.|++++++|+++.+||+|+. ..|+.+.++.+...+.++++++|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 57999999999999999999999999999999999999974 358889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCc--eeccceEEEEEEeCC---CCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCC-
Q 014522 93 TKRQFIQYLESYAEKFEIN--PRFNECVQSARYDET---SGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPD- 166 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~- 166 (423)
+..++.+|++++++++++. ++++++|++++...+ .+.|.|++.+ ++ ..++..+|.||+|||.++.|.+|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-~g---~~~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-DG---KEETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-TT---EEEEEEECEEEEEE-SSSCESB---
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-CC---eEEEEEeCeEEEcCCCcCCCCCChh
Confidence 9999999999999999986 689999999988653 3689998865 21 335678999999999999999995
Q ss_pred -CCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHH--HHH
Q 014522 167 -IEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFEL--ATL 243 (423)
Q Consensus 167 -~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~--~~~ 243 (423)
+||++.+.|.++|+.++.+...+.+|+|+|||+|.+|+|+|..|+..+.+|++..|++.|++|+....+...+. ...
T Consensus 158 ~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R 237 (531)
T PF00743_consen 158 SFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTR 237 (531)
T ss_dssp --CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-----------------------
T ss_pred hhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999987632211111 111
Q ss_pred HH----hhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecCceEEeCCe
Q 014522 244 MM----KWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPGIKRISCGQ 319 (423)
Q Consensus 244 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~ 319 (423)
.. +.+|..+...+......... +...+++ ........+.|.+.+.+...+..++|+++.+|.++++++
T Consensus 238 ~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl-------~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~ 309 (531)
T PF00743_consen 238 FSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGL-------KPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENS 309 (531)
T ss_dssp ---------------------------------------------------------------------EE-EEEE-SSE
T ss_pred cccccccccccccccccccccccccc-ccccccc-------ccccccccccccccccccccccccccccccccccccccc
Confidence 11 12232222111111000000 1112222 111123345678899999999999999998899999999
Q ss_pred EEEccCcEe-cccEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCC---CCCCceEEEeeccc-c--CCCcchhHHH
Q 014522 320 AELINGEKL-DIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGW---KGNAGLYAVGFTRR-G--LSGASSDAMR 392 (423)
Q Consensus 320 v~~~~g~~~-~~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~---~~~~~vya~Gd~~~-~--~~~a~~~g~~ 392 (423)
|+++||+++ ++|.||+|||++.+. +|+++.-+...++.+. =+.+.. ...|++.++|-+.. + ...+-.||++
T Consensus 310 v~F~DGs~~e~vD~II~~TGY~~~f-pFL~~~~~~~~~~~~~-LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw 387 (531)
T PF00743_consen 310 VIFEDGSTEEDVDVIIFCTGYKFSF-PFLDESLIKVDDNRVR-LYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARW 387 (531)
T ss_dssp EEETTSEEEEE-SEEEE---EE----TTB-TTTT-S-SSSSS-EETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc-cccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 999999975 699999999999988 5555542222222221 111221 13589999998753 2 2367899999
Q ss_pred HHHHHhhhhHHHHHH
Q 014522 393 IAQDIGKVWKEETKQ 407 (423)
Q Consensus 393 ~a~~i~~~l~~~~~~ 407 (423)
+|.-+.+...-++..
T Consensus 388 ~a~v~sG~~~LPs~~ 402 (531)
T PF00743_consen 388 AARVFSGRVKLPSKE 402 (531)
T ss_dssp HHHHHTTSS----HH
T ss_pred ccccccccccccccc
Confidence 999998876644443
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.6e-37 Score=301.66 Aligned_cols=314 Identities=23% Similarity=0.389 Sum_probs=241.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc--------------------cCCceeecCCCccccC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR--------------------TYDRLNLHLPKQFCQL 79 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~--------------------~~~~~~~~~~~~~~~~ 79 (423)
..++|+|||||++||+||..|.+.|++++++|+.+.+||.|... .|..+.++.+...+.+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 46899999999999999999999999999999999999999652 3666777888888888
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCc--eeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeC
Q 014522 80 PKLQFPED-------FPEYPTKRQFIQYLESYAEKFEIN--PRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICR 150 (423)
Q Consensus 80 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 150 (423)
++++++.. .+.|++..++.+|++++++++++. ++++++|++++..+ +.|.|++.+..+ ...+..+|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~~~~d 163 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKDEIFD 163 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEEEEcC
Confidence 88877542 356889999999999999999988 78999999998865 789998865211 12357899
Q ss_pred EEEEccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecc
Q 014522 151 WLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPR 230 (423)
Q Consensus 151 ~vviAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~ 230 (423)
+||+|||.++.|.+|.+||++.+.+..+|+..+.....+.+++|+|||+|.+|+|+|..|+..+.+|++++|++. ...
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~-~~~- 241 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE-SDT- 241 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc-ccc-
Confidence 999999998899999999999999999999999888888999999999999999999999999999999999762 100
Q ss_pred cccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEec
Q 014522 231 EILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVP 310 (423)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 310 (423)
.. +. .....++.+..
T Consensus 242 -~~------------------------------------~~----------------------------~~~~~~v~~~~ 256 (461)
T PLN02172 242 -YE------------------------------------KL----------------------------PVPQNNLWMHS 256 (461)
T ss_pred -cc------------------------------------cC----------------------------cCCCCceEECC
Confidence 00 00 00011232322
Q ss_pred CceEEeC-CeEEEccCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCC-CCCCCC-CCceEEEeeccccC--C
Q 014522 311 GIKRISC-GQAELINGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPF-PHGWKG-NAGLYAVGFTRRGL--S 384 (423)
Q Consensus 311 ~i~~~~~-~~v~~~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~-~~~~~~-~~~vya~Gd~~~~~--~ 384 (423)
.|..+.. ++|+++||+++++|.||+|||++++. +|++..+. ..++..+..=+ +..... .|+++++|-..... .
T Consensus 257 ~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~-pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~ 335 (461)
T PLN02172 257 EIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHF-PFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFV 335 (461)
T ss_pred cccceecCCeEEECCCCCccCCEEEECCcCCccc-cccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCch
Confidence 3444433 45889999999999999999999998 66665543 22222221111 112233 48999999875443 3
Q ss_pred CcchhHHHHHHHHhhhhHHHHH
Q 014522 385 GASSDAMRIAQDIGKVWKEETK 406 (423)
Q Consensus 385 ~a~~~g~~~a~~i~~~l~~~~~ 406 (423)
.+-.||+++|.-+.+.+.-++.
T Consensus 336 ~~E~Qa~~~a~v~sG~~~LPs~ 357 (461)
T PLN02172 336 MFEIQSKWVAAVLSGRVTLPSE 357 (461)
T ss_pred hHHHHHHHHHHHHcCCCCCcCH
Confidence 6778999999999887654443
No 3
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=9.4e-36 Score=284.95 Aligned_cols=304 Identities=19% Similarity=0.270 Sum_probs=214.6
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccC-CceeecCCCcc----------ccCCCCCCCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTY-DRLNLHLPKQF----------CQLPKLQFPED 87 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~ 87 (423)
++.||++|||+||+|..+|..+++.|.++.++|+.+..||+|-+..+ |.-.+...... +.+......-+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 35799999999999999999999999999999999888887755322 22111111110 01100000001
Q ss_pred CCCCC-C----HHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 88 FPEYP-T----KRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 88 ~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
|.... . ..........+.+..+++++.+.-. +.+ .+. |.+... +.++++++++||||| ++|
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~----f~~-~~~--v~V~~~-----~~~~~~a~~iiIATG--S~p 147 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEAR----FVD-PHT--VEVTGE-----DKETITADNIIIATG--SRP 147 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEE----ECC-CCE--EEEcCC-----CceEEEeCEEEEcCC--CCC
Confidence 11111 1 1222233455555567765444311 111 144 444431 127999999999999 999
Q ss_pred cCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 163 VMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 163 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
..|++++++... ++.+.+..... ..+++++|||+|++|+|+|..++++|.+||++.|.+ .++|.++. +
T Consensus 148 ~~~~~~~~~~~~--~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~-----e--- 215 (454)
T COG1249 148 RIPPGPGIDGAR--ILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDP-----E--- 215 (454)
T ss_pred cCCCCCCCCCCe--EEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCH-----H---
Confidence 999888877532 33333333333 678999999999999999999999999999999999 77776654 2
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG-- 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-- 318 (423)
+.+.+.+.+++++++++++ +.+++.+
T Consensus 216 --------------------------------------------------i~~~~~~~l~~~gv~i~~~~~v~~~~~~~~ 245 (454)
T COG1249 216 --------------------------------------------------ISKELTKQLEKGGVKILLNTKVTAVEKKDD 245 (454)
T ss_pred --------------------------------------------------HHHHHHHHHHhCCeEEEccceEEEEEecCC
Confidence 2333455566677888877 5565543
Q ss_pred --eEEEccCc--EecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccchh
Q 014522 319 --QAELINGE--KLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSD 389 (423)
Q Consensus 319 --~v~~~~g~--~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 389 (423)
.+.+++|. ++++|.|++|+|++||++.| ++..|+ .+++|++.+| .+++|+.|+|||+||++++.+ .|.+|
T Consensus 246 ~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~e 324 (454)
T COG1249 246 GVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAE 324 (454)
T ss_pred eEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHH
Confidence 26667776 79999999999999999767 888999 6778999999 788899999999999987654 79999
Q ss_pred HHHHHHHHhh
Q 014522 390 AMRIAQDIGK 399 (423)
Q Consensus 390 g~~~a~~i~~ 399 (423)
|+++|.+|.+
T Consensus 325 g~iaa~~i~g 334 (454)
T COG1249 325 GRIAAENIAG 334 (454)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 4
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=8.6e-35 Score=271.40 Aligned_cols=283 Identities=25% Similarity=0.362 Sum_probs=210.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQYL 101 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
+||+|||||++|+++|..|++.|.+|+|||+.+ .||.|.... .+..++.+ +......++.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 689999999999999999999999999999876 566543210 01111111 1123556888999
Q ss_pred HHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeeecC
Q 014522 102 ESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHAC 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~~ 181 (423)
.+.++++++++++ ++|++++... ..|.+++.+ + ..+.||+||+||| +.|..|.+||...+.+...+.+
T Consensus 64 ~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~------~-~~~~~d~liiAtG--~~~~~~~i~g~~~~~~~~~~~~ 131 (300)
T TIGR01292 64 KEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGD------G-KEYTAKAVIIATG--ASARKLGIPGEDEFLGRGVSYC 131 (300)
T ss_pred HHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCC------C-CEEEeCEEEECCC--CCcccCCCCChhhcCCccEEEe
Confidence 9999999999887 8899998865 677777754 4 5899999999999 6777788888765544434444
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHH
Q 014522 182 DYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILA 261 (423)
Q Consensus 182 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (423)
.........+++++|||+|.+|+|+|..|++.+.+|+++.|.+... ..
T Consensus 132 ~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-~~------------------------------- 179 (300)
T TIGR01292 132 ATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-AE------------------------------- 179 (300)
T ss_pred eecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-cC-------------------------------
Confidence 3334444567899999999999999999999999999999987311 00
Q ss_pred HHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcC-CeEEecC--ceEEeCCe----EEEc---cC--cEec
Q 014522 262 WFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSG-HINVVPG--IKRISCGQ----AELI---NG--EKLD 329 (423)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--i~~~~~~~----v~~~---~g--~~~~ 329 (423)
..+.+.+++. +|+++.+ +.++..++ +.+. ++ .+++
T Consensus 180 ---------------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~ 226 (300)
T TIGR01292 180 ---------------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELK 226 (300)
T ss_pred ---------------------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEE
Confidence 0012223344 7887765 66666542 4432 23 4799
Q ss_pred ccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccc-c---CCCcchhHHHHHHHHhhhh
Q 014522 330 IDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRR-G---LSGASSDAMRIAQDIGKVW 401 (423)
Q Consensus 330 ~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~-~---~~~a~~~g~~~a~~i~~~l 401 (423)
+|.+|+|+|++|+. .+++.+ + .+++|++.++ ++++++.|+||++|||+. . ...|+.||+.+|.+|.+.|
T Consensus 227 ~D~vi~a~G~~~~~-~~l~~~-~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 227 VDGVFIAIGHEPNT-ELLKGL-LELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred ccEEEEeeCCCCCh-HHHHHh-heecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 99999999999997 666665 4 4567888888 568899999999999996 2 3379999999999998764
No 5
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=263.35 Aligned_cols=288 Identities=23% Similarity=0.344 Sum_probs=223.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
+++||+||||||+|++||..+.+.+++++|++....+||.... .. ....+| .++.-....++.+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~------~~-------~venyp---g~~~~~~g~~L~~ 65 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTK------TT-------DVENYP---GFPGGILGPELME 65 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcccc------ce-------eecCCC---CCccCCchHHHHH
Confidence 5789999999999999999999999984444444445432211 00 111111 1122236788888
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
.+.+.+..+++++.. ..|..++... ..|.|.+.+ + ++++++|||||| ..+..|.+|+..++.++.++
T Consensus 66 ~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~------~--~~~ak~vIiAtG--~~~~~~~~~~e~e~~g~gv~ 132 (305)
T COG0492 66 QMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDK------G--TYEAKAVIIATG--AGARKLGVPGEEEFEGKGVS 132 (305)
T ss_pred HHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECC------C--eEEEeEEEECcC--CcccCCCCCcchhhcCCceE
Confidence 888999889988665 6677777654 388898887 5 499999999999 77778888887788888889
Q ss_pred cCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHH
Q 014522 180 ACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLI 259 (423)
Q Consensus 180 ~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (423)
.|..++. .+.+++++|||+|.+|+|.|..|.+.+.+|++++|++. +.+..
T Consensus 133 yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~-~ra~~---------------------------- 182 (305)
T COG0492 133 YCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE-FRAEE---------------------------- 182 (305)
T ss_pred EeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc-cCcCH----------------------------
Confidence 9988988 88899999999999999999999999999999999993 21111
Q ss_pred HHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhc-CCeEEecC--ceEEeC---CeEEEccCc----Eec
Q 014522 260 LAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRS-GHINVVPG--IKRISC---GQAELINGE----KLD 329 (423)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--i~~~~~---~~v~~~~g~----~~~ 329 (423)
...+.+++ .+|.++.+ +.++.. +++++++.+ +++
T Consensus 183 ------------------------------------~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~ 226 (305)
T COG0492 183 ------------------------------------ILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELP 226 (305)
T ss_pred ------------------------------------HHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEE
Confidence 12222333 27888776 778777 467777642 789
Q ss_pred ccEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeecccc----CCCcchhHHHHHHHHhhhhHHH
Q 014522 330 IDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRG----LSGASSDAMRIAQDIGKVWKEE 404 (423)
Q Consensus 330 ~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~g~~~a~~i~~~l~~~ 404 (423)
+|-+++++|..|++ .|++..+..+++|+++++ ..++|+.|||||+||+... +..|..+|..+|.++.+.+...
T Consensus 227 ~~gvf~~iG~~p~~-~~~~~~~~~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 227 VDGVFIAIGHLPNT-ELLKGLGVLDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred eceEEEecCCCCch-HHHhhccccCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 99999999999998 888887777889999999 4699999999999999864 4489999999999999888754
No 6
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2e-34 Score=270.93 Aligned_cols=294 Identities=22% Similarity=0.297 Sum_probs=216.9
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
...+||+||||||+|++||..|+++|.++++||.. ..||.+... ...+.++.. +.......+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~~------~~~~~~~~~~ 66 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPGD------PNDLTGPLLM 66 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCCC------CCCCCHHHHH
Confidence 35789999999999999999999999999999964 556654321 011111111 2234567788
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
+++.+.+..++..++.+ +|..++... +.|.++... ..+.||+||+||| +.|+.|.+||.+.+.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~--------~~~~~d~vilAtG--~~~~~~~i~g~~~~~~~~v 133 (321)
T PRK10262 67 ERMHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDS--------GEYTCDALIIATG--ASARYLGLPSEEAFKGRGV 133 (321)
T ss_pred HHHHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecC--------CEEEECEEEECCC--CCCCCCCCCCHHHcCCCcE
Confidence 88888888888776554 577777655 777776543 3689999999999 7788888998766655556
Q ss_pred ecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHH
Q 014522 179 HACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILL 258 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (423)
+.+..++.....+++++|||+|.+|+|+|..|++.+.+|+++.|.+. +.. . . .
T Consensus 134 ~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-~~~-~-~-----~------------------- 186 (321)
T PRK10262 134 SACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-FRA-E-K-----I------------------- 186 (321)
T ss_pred EEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-cCC-C-H-----H-------------------
Confidence 66666666666789999999999999999999999999999999873 210 0 0 0
Q ss_pred HHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC-----eEEEccC------
Q 014522 259 ILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG-----QAELING------ 325 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-----~v~~~~g------ 325 (423)
....+.+.+++.+|+++++ +.++..+ ++++.++
T Consensus 187 ----------------------------------~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~ 232 (321)
T PRK10262 187 ----------------------------------LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNI 232 (321)
T ss_pred ----------------------------------HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeE
Confidence 0111344466778998876 7777765 3555532
Q ss_pred cEecccEEEEcCCCCCCCCCcccccccccCCCCCCCCC----CCCCCCCCceEEEeeccccC----CCcchhHHHHHHHH
Q 014522 326 EKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPF----PHGWKGNAGLYAVGFTRRGL----SGASSDAMRIAQDI 397 (423)
Q Consensus 326 ~~~~~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~----~~~~~~~~~vya~Gd~~~~~----~~a~~~g~~~a~~i 397 (423)
+++++|.||+++|++|+. .+++. ++..++|++.++. .+++|+.|+|||+|||+... ..|+.+|..+|..|
T Consensus 233 ~~i~~D~vv~a~G~~p~~-~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~ 310 (321)
T PRK10262 233 ESLDVAGLFVAIGHSPNT-AIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDA 310 (321)
T ss_pred EEEECCEEEEEeCCccCh-hHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHH
Confidence 379999999999999997 45443 3433567777773 15789999999999999642 37999999999999
Q ss_pred hhhhHHHH
Q 014522 398 GKVWKEET 405 (423)
Q Consensus 398 ~~~l~~~~ 405 (423)
..++....
T Consensus 311 ~~~l~~~~ 318 (321)
T PRK10262 311 ERYLDGLA 318 (321)
T ss_pred HHHHHhcc
Confidence 99987654
No 7
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=273.34 Aligned_cols=354 Identities=29% Similarity=0.446 Sum_probs=254.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVP-FVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQF 97 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (423)
..+.||+|||||++|+++|+.|.++|.. ++|+|+++.+||+|+.+.|+.+.++.++..+.+++.+++ +...++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 3578999999999999999999999997 999999999999999999999999999999999999997 33444555557
Q ss_pred HHHHHHHHHHcCCc--eeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCc
Q 014522 98 IQYLESYAEKFEIN--PRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGG 175 (423)
Q Consensus 98 ~~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~ 175 (423)
.+|+...++++++. +.+++.|+.++++.+.+.|.|++.+... .++.+|+||+|||.++.|.+|.++|.+.+.+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g 159 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GELTADFVVVATGHLSEPYIPDFAGLDEFKG 159 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----eeEecCEEEEeecCCCCCCCCCCCCccCCCc
Confidence 77777777777765 4677888888888887899999987321 2278999999999999999999999999999
Q ss_pred eeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHH---
Q 014522 176 EVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWL--- 252 (423)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 252 (423)
.++|+.++.+...+.+|+|+|||+|++|++++..|++.|++|+++.|++.+++|....+....... ...+.++...
T Consensus 160 ~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 238 (443)
T COG2072 160 RILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRL-ALRRALPAGWALR 238 (443)
T ss_pred eEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHH-HHhhhCccceehh
Confidence 999999999999999999999999999999999999999999999999988888776544322211 1111111111
Q ss_pred ----HHHHHH----------------HHHH-HHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC
Q 014522 253 ----VDKILL----------------ILAW-FILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG 311 (423)
Q Consensus 253 ----~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 311 (423)
...+.. ...+ .........++. ....|. -....++...+..+........+.+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 315 (443)
T COG2072 239 RGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVR-EDLGPD--YAPGDGRLVPDGDLFEAGASGDVEVVTE 315 (443)
T ss_pred hhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChH-hhcCCC--CCccccccccccchhhhhhhcccceeec
Confidence 000000 0000 000000000100 000111 0122233455667777788888888887
Q ss_pred -ceEEeCCeEEEccCcEecccEEEEcCCCCCCCCCccccc-cccc-CCCCCCCCCCCCCCCCCceEEEeecccc
Q 014522 312 -IKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQES-EFFS-ENGFPKAPFPHGWKGNAGLYAVGFTRRG 382 (423)
Q Consensus 312 -i~~~~~~~v~~~~g~~~~~D~vi~a~G~~~~~~~ll~~~-~~~~-~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 382 (423)
+..+...++..+++.++++|.++.+||+..+.-...... +... ..............+.|++|.++.-...
T Consensus 316 ~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~ 389 (443)
T COG2072 316 IIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKA 389 (443)
T ss_pred cccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCC
Confidence 777777777777777899999999999988521111111 1111 1122222323455678999998876654
No 8
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=2.3e-33 Score=278.69 Aligned_cols=287 Identities=21% Similarity=0.302 Sum_probs=213.9
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
...+||+||||||||++||..|++.|++++|++. .+||.+... ..+..+... ......++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~----------~~~~~~~~~-------~~~~~~~l~ 270 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT----------VGIENLISV-------PYTTGSQLA 270 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC----------cCccccccc-------CCCCHHHHH
Confidence 3579999999999999999999999999999985 477766421 000001000 113567788
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
+.+.+.+++++++++.+++|++++... +.+.+++.+ + ..+.||++|+||| +.+..|.+||...+....+
T Consensus 271 ~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~------g-~~i~~d~lIlAtG--a~~~~~~ipG~~~~~~~~v 339 (515)
T TIGR03140 271 ANLEEHIKQYPIDLMENQRAKKIETED--GLIVVTLES------G-EVLKAKSVIVATG--ARWRKLGVPGEKEYIGKGV 339 (515)
T ss_pred HHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECC------C-CEEEeCEEEECCC--CCcCCCCCCCHHHcCCCeE
Confidence 888888888999999999999998765 667777765 4 5799999999999 6677788888654443333
Q ss_pred ecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHH
Q 014522 179 HACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILL 258 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (423)
+.+..++.....+++++|||+|++|+|+|..|+..+.+|+++.+.+. +...
T Consensus 340 ~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~-l~~~---------------------------- 390 (515)
T TIGR03140 340 AYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE-LKAD---------------------------- 390 (515)
T ss_pred EEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc-CChh----------------------------
Confidence 44333333445678999999999999999999999999999988772 2100
Q ss_pred HHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhc-CCeEEecC--ceEEeCC-----eEEEccC-----
Q 014522 259 ILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRS-GHINVVPG--IKRISCG-----QAELING----- 325 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--i~~~~~~-----~v~~~~g----- 325 (423)
..+.+.+++ .+|+++.+ +.++..+ ++.+.++
T Consensus 391 ------------------------------------~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~ 434 (515)
T TIGR03140 391 ------------------------------------KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEE 434 (515)
T ss_pred ------------------------------------HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcE
Confidence 001222333 57888876 6677654 2555432
Q ss_pred cEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc----CCCcchhHHHHHHHHhhh
Q 014522 326 EKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG----LSGASSDAMRIAQDIGKV 400 (423)
Q Consensus 326 ~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~g~~~a~~i~~~ 400 (423)
+++++|.|++|+|+.|++ .+++.. + .+++|++.+| .+++|+.|+|||+|||+.. +..|+.+|..+|.+|.++
T Consensus 435 ~~i~~D~vi~a~G~~Pn~-~~l~~~-~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 435 KQLDLDGVFVQIGLVPNT-EWLKDA-VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred EEEEcCEEEEEeCCcCCc-hHHhhh-cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHH
Confidence 369999999999999998 666655 5 4567999998 5788999999999999864 238999999999999988
Q ss_pred hHH
Q 014522 401 WKE 403 (423)
Q Consensus 401 l~~ 403 (423)
+.+
T Consensus 512 ~~~ 514 (515)
T TIGR03140 512 LIR 514 (515)
T ss_pred Hhh
Confidence 754
No 9
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.5e-33 Score=278.72 Aligned_cols=288 Identities=17% Similarity=0.262 Sum_probs=220.1
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
...+||+||||||+|+++|..|++.|++++|+++. +||.|.... .+..++ . ..+....++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-------------~~~~~~---~-~~~~~~~~l~ 269 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-------------GIENFI---S-VPETEGPKLA 269 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-------------cccccC---C-CCCCCHHHHH
Confidence 45789999999999999999999999999999863 788764210 111110 0 0124677899
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
+++...+++++++++.+++|++++... +.|.|.+.+ + ..+.||.||+||| +.++.|.+||..++.+..+
T Consensus 270 ~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~------g-~~i~a~~vViAtG--~~~r~~~ipG~~~~~~~~v 338 (517)
T PRK15317 270 AALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELAN------G-AVLKAKTVILATG--ARWRNMNVPGEDEYRNKGV 338 (517)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECC------C-CEEEcCEEEECCC--CCcCCCCCCCHHHhcCceE
Confidence 999999999999999999999998865 677787755 4 5799999999999 6777788888766655555
Q ss_pred ecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHH
Q 014522 179 HACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILL 258 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (423)
+.+...+.....+++++|||+|++|+|+|..|+..+.+|+++.+.+. +.+..
T Consensus 339 ~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~-l~~~~--------------------------- 390 (517)
T PRK15317 339 AYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE-LKADQ--------------------------- 390 (517)
T ss_pred EEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc-ccccH---------------------------
Confidence 55555555556789999999999999999999999999999998872 21100
Q ss_pred HHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhh-cCCeEEecC--ceEEeCC-----eEEEc---cCc-
Q 014522 259 ILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIR-SGHINVVPG--IKRISCG-----QAELI---NGE- 326 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~--i~~~~~~-----~v~~~---~g~- 326 (423)
.+.+.+. ..+|+++.+ +.++..+ ++.+. +|+
T Consensus 391 -------------------------------------~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~ 433 (517)
T PRK15317 391 -------------------------------------VLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEE 433 (517)
T ss_pred -------------------------------------HHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcE
Confidence 0111222 257888876 6666654 24443 233
Q ss_pred -EecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc----CCCcchhHHHHHHHHhhh
Q 014522 327 -KLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG----LSGASSDAMRIAQDIGKV 400 (423)
Q Consensus 327 -~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~g~~~a~~i~~~ 400 (423)
++++|.|++|+|++|++ .|++.. + .+++|++.+| ++++|+.|+|||+||++.. +..|+.+|..+|.++..+
T Consensus 434 ~~i~~D~v~~~~G~~p~~-~~l~~~-v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~ 510 (517)
T PRK15317 434 HHLELEGVFVQIGLVPNT-EWLKGT-VELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDY 510 (517)
T ss_pred EEEEcCEEEEeECCccCc-hHHhhh-eeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHH
Confidence 69999999999999998 676665 5 5667999988 5788999999999999874 348999999999999998
Q ss_pred hHHH
Q 014522 401 WKEE 404 (423)
Q Consensus 401 l~~~ 404 (423)
+.+.
T Consensus 511 l~~~ 514 (517)
T PRK15317 511 LIRN 514 (517)
T ss_pred Hhhc
Confidence 8764
No 10
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.3e-33 Score=276.11 Aligned_cols=296 Identities=17% Similarity=0.237 Sum_probs=199.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCCc----cccCCCCCCC------CCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPKQ----FCQLPKLQFP------EDFP 89 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~----~~~~~~~~~~------~~~~ 89 (423)
.|||+||||||+|++||..|++.|.+|+|+|+. .+||+|.+. +.+...+-.... ......+..+ .+|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999995 578876542 222211000000 0000011000 0111
Q ss_pred CCC-CHH----HHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 90 EYP-TKR----QFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 90 ~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
... ..+ .+.+.+...+++.+++++.++.+. .++ .. |.+. + ..+.||+||+||| +.|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~--~~--v~v~-------~-~~~~~d~vIiAtG--s~p~~ 143 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKD--GT--VEVN-------G-RDYTAPHILIATG--GKPSF 143 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccC--CE--EEEC-------C-EEEEeCEEEEecC--CCCCC
Confidence 111 111 222334455566688877766431 111 33 5543 3 5799999999999 88888
Q ss_pred C-CCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHH
Q 014522 165 P-DIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATL 243 (423)
Q Consensus 165 p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~ 243 (423)
| .+||.+.. ..+.... .....+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .+++..+.
T Consensus 144 p~~i~g~~~~----~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~---------- 207 (450)
T TIGR01421 144 PENIPGAELG----TDSDGFF-ALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDS---------- 207 (450)
T ss_pred CCCCCCCcee----EcHHHhh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCH----------
Confidence 8 78876421 1111111 122346899999999999999999999999999999988 44443321
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC---
Q 014522 244 MMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG--- 318 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--- 318 (423)
.....+.+.+++.+|+++++ +.++..+
T Consensus 208 ------------------------------------------------~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~ 239 (450)
T TIGR01421 208 ------------------------------------------------MISETITEEYEKEGINVHKLSKPVKVEKTVEG 239 (450)
T ss_pred ------------------------------------------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCc
Confidence 11122344456678998877 6666532
Q ss_pred --eEEEccC-cEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhH
Q 014522 319 --QAELING-EKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDA 390 (423)
Q Consensus 319 --~v~~~~g-~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g 390 (423)
.+.+++| +++++|.||+|+|++||+..+ ++..++ .+++|++.+| ++++|+.|+|||+|||++... .|.+||
T Consensus 240 ~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g 318 (450)
T TIGR01421 240 KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAG 318 (450)
T ss_pred eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHH
Confidence 2556677 579999999999999998443 677787 5678999998 578899999999999987543 789999
Q ss_pred HHHHHHHhh
Q 014522 391 MRIAQDIGK 399 (423)
Q Consensus 391 ~~~a~~i~~ 399 (423)
+.+|++|.+
T Consensus 319 ~~aa~~i~~ 327 (450)
T TIGR01421 319 RKLSERLFN 327 (450)
T ss_pred HHHHHHHhc
Confidence 999999974
No 11
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.6e-33 Score=276.48 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=202.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEec---------CCCCCccccc-ccCCceeecCCCcc---------ccCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLER---------AECIASLWQK-RTYDRLNLHLPKQF---------CQLP 80 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~---------~~~~gg~~~~-~~~~~~~~~~~~~~---------~~~~ 80 (423)
.+|||+||||||+|+.+|..++++|.+|+|||+ ...+||+|-+ +++|.-.+-..... +.+.
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 368999999999999999999999999999996 3568888744 33332222111000 1111
Q ss_pred CCCCC-CCCCCCC-----CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEE
Q 014522 81 KLQFP-EDFPEYP-----TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVV 154 (423)
Q Consensus 81 ~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vvi 154 (423)
....+ -++.... ....+...+..+....+++++.+ ++..++. ..+.|++.+ +....+.||+||+
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~-----g~~~~~~~d~LII 173 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLD-----GTKLRYTAKHILI 173 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCC-----CcEEEEEcCEEEE
Confidence 00000 0101000 01112223344445556664443 3444432 455566554 1224699999999
Q ss_pred ccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccC
Q 014522 155 ATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILG 234 (423)
Q Consensus 155 AtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~ 234 (423)
||| +.|..|.+||.+.. ...+........+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .+++..+.
T Consensus 174 ATG--s~p~~p~ipG~~~~-----~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~- 244 (499)
T PLN02507 174 ATG--SRAQRPNIPGKELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFDD- 244 (499)
T ss_pred ecC--CCCCCCCCCCccce-----echHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccCH-
Confidence 999 88888888886431 1222111122346899999999999999999999999999999988 34333221
Q ss_pred CChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--c
Q 014522 235 KSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--I 312 (423)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i 312 (423)
.....+.+.+++.+|+++.+ +
T Consensus 245 ---------------------------------------------------------~~~~~l~~~l~~~GI~i~~~~~V 267 (499)
T PLN02507 245 ---------------------------------------------------------EMRAVVARNLEGRGINLHPRTNL 267 (499)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHhCCCEEEeCCEE
Confidence 11112334455678888877 6
Q ss_pred eEEeC--Ce--EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC--
Q 014522 313 KRISC--GQ--AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS-- 384 (423)
Q Consensus 313 ~~~~~--~~--v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~-- 384 (423)
.++.. ++ +.+.+|+++++|.||+|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||++...
T Consensus 268 ~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l~ 346 (499)
T PLN02507 268 TQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINLT 346 (499)
T ss_pred EEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCccH
Confidence 66653 23 455678899999999999999998443 667777 5668999998 578899999999999997543
Q ss_pred -CcchhHHHHHHHHhhh
Q 014522 385 -GASSDAMRIAQDIGKV 400 (423)
Q Consensus 385 -~a~~~g~~~a~~i~~~ 400 (423)
.|.+||+++|.||.+.
T Consensus 347 ~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 347 PVALMEGTCFAKTVFGG 363 (499)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 7899999999999753
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.6e-33 Score=273.27 Aligned_cols=299 Identities=15% Similarity=0.156 Sum_probs=202.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCCc----cccCCCCCC-----CCCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPKQ----FCQLPKLQF-----PEDFPE 90 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~ 90 (423)
.|||+||||||+|++||..++++|.+|+|+|+. .+||++.+. +.|...+..... +.....+.. .-+|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 589999999999999999999999999999985 688876543 222211100000 000000000 001110
Q ss_pred CC-----CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 91 YP-----TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 91 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
.. ....+.++++..+++.+++++.+ ++..++. ....+. .+ + ..++||+||+||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~-~~------g-~~~~~d~lIiATG--s~p~~p 145 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVL-QD------G-TTYTAKKILIAVG--GRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEe-cC------C-eEEEcCEEEEecC--CcCCCC
Confidence 00 11234455666677778886554 5655542 333332 22 3 5799999999999 888888
Q ss_pred CCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHH
Q 014522 166 DIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMM 245 (423)
Q Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
.+||.+.. ..+.+.. .....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .+++..+. +
T Consensus 146 ~i~G~~~~----~~~~~~~-~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~-----~------ 208 (446)
T TIGR01424 146 NLPGHELG----ITSNEAF-HLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDD-----D------ 208 (446)
T ss_pred CCCCccce----echHHhh-cccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCH-----H------
Confidence 88886431 1111111 122347899999999999999999999999999999988 34343221 1
Q ss_pred hhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce--
Q 014522 246 KWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ-- 319 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~-- 319 (423)
....+.+.+++.+|+++.+ +.++.. ++
T Consensus 209 -----------------------------------------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~ 241 (446)
T TIGR01424 209 -----------------------------------------------MRALLARNMEGRGIRIHPQTSLTSITKTDDGLK 241 (446)
T ss_pred -----------------------------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEE
Confidence 1111234455678888876 667653 23
Q ss_pred EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHHHHH
Q 014522 320 AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAMRIA 394 (423)
Q Consensus 320 v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~~~a 394 (423)
+.+.+|+++++|.||+|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||++... .|.+||+.+|
T Consensus 242 v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a 320 (446)
T TIGR01424 242 VTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFA 320 (446)
T ss_pred EEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHH
Confidence 455678899999999999999998443 567777 5668989888 578899999999999997543 7899999999
Q ss_pred HHHhhh
Q 014522 395 QDIGKV 400 (423)
Q Consensus 395 ~~i~~~ 400 (423)
++|.+.
T Consensus 321 ~~i~~~ 326 (446)
T TIGR01424 321 NTEFGN 326 (446)
T ss_pred HHHhcC
Confidence 999863
No 13
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.1e-33 Score=275.73 Aligned_cols=298 Identities=17% Similarity=0.183 Sum_probs=201.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCCc----------cccCCCCCCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPKQ----------FCQLPKLQFPEDF 88 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~ 88 (423)
..|||+||||||+|++||..|+++|.+|+|||+. .+||+|.+. +.+...+..... .+.+......-+|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 3689999999999999999999999999999986 788876542 222111000000 0011100000011
Q ss_pred CCCCC-----HHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 89 PEYPT-----KRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 89 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
..... ...+.+.+...+.+.+++++.++ +..++ . .. |++ + + ..++||+||+||| +.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~--~--~~--v~~-~------g-~~~~~d~lViATG--s~p~ 144 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD--A--HT--VEV-N------G-ERYTADHILIATG--GRPS 144 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CE--EEE-C------C-EEEEeCEEEEecC--CCCC
Confidence 11100 11222334445556688766553 44442 1 33 555 3 4 5799999999999 7888
Q ss_pred CCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHH
Q 014522 164 MPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATL 243 (423)
Q Consensus 164 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~ 243 (423)
.|.+||.+. ..+..+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++....
T Consensus 145 ~p~i~g~~~----~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~---------- 208 (450)
T PRK06116 145 IPDIPGAEY----GITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDP---------- 208 (450)
T ss_pred CCCCCCcce----eEchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCH----------
Confidence 888888642 122222222 23346899999999999999999999999999999988 33332221
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce
Q 014522 244 MMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ 319 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~ 319 (423)
.....+.+.+++.+|+++.+ +.++.. ++
T Consensus 209 ------------------------------------------------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g 240 (450)
T PRK06116 209 ------------------------------------------------DIRETLVEEMEKKGIRLHTNAVPKAVEKNADG 240 (450)
T ss_pred ------------------------------------------------HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCc
Confidence 11112344456678888876 677753 22
Q ss_pred ---EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHH
Q 014522 320 ---AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAM 391 (423)
Q Consensus 320 ---v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~ 391 (423)
+.+.+|+++++|.||+|+|++|+...+ ++..++ .+++|++.+| ++++|+.|+|||+|||++... .|.+||+
T Consensus 241 ~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~ 319 (450)
T PRK06116 241 SLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGR 319 (450)
T ss_pred eEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHH
Confidence 556788899999999999999998544 566677 5678999999 578899999999999986543 7899999
Q ss_pred HHHHHHhhh
Q 014522 392 RIAQDIGKV 400 (423)
Q Consensus 392 ~~a~~i~~~ 400 (423)
.+|++|.+.
T Consensus 320 ~aa~~i~g~ 328 (450)
T PRK06116 320 RLSERLFNN 328 (450)
T ss_pred HHHHHHhCC
Confidence 999999763
No 14
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.1e-33 Score=273.05 Aligned_cols=296 Identities=20% Similarity=0.257 Sum_probs=199.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccC-CceeecCCCccccCCCCCCCCCCCC-CCCHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE-CIASLWQKRTY-DRLNLHLPKQFCQLPKLQFPEDFPE-YPTKRQF 97 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~-~~gg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 97 (423)
.|||+||||||+|+++|..|+++|.+|+|||+.+ ..||+|....+ +...+..+. .. ..++.. ....+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~-------~~-~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA-------QQ-HTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh-------cc-CCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999976 46887754221 111100000 00 001100 0111223
Q ss_pred HHHHH-----HHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCC
Q 014522 98 IQYLE-----SYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLAD 172 (423)
Q Consensus 98 ~~~~~-----~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~ 172 (423)
.++++ .+.+..+++++.+ ++..++ . +.+.|.+.+ +...+.||+||+||| +.|..|.+||+++
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~--~~~~v~~~~------g~~~~~~d~lviATG--s~p~~p~i~G~~~ 141 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDVIDG-QAEFIN--N--HSLRVHRPE------GNLEIHGEKIFINTG--AQTVVPPIPGITT 141 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEEEEE-EEEEec--C--CEEEEEeCC------CeEEEEeCEEEEcCC--CcCCCCCCCCccC
Confidence 33332 2222235665433 344443 2 455566544 434799999999999 8888899999765
Q ss_pred CCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHH
Q 014522 173 FGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWL 252 (423)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (423)
..+ ++...... .....+++++|||+|.+|+|+|..|++.|.+|+++.|++ .++|..+. ++
T Consensus 142 ~~~-v~~~~~~~-~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~------------ 201 (441)
T PRK08010 142 TPG-VYDSTGLL-NLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDR-----DI------------ 201 (441)
T ss_pred CCC-EEChhHhh-cccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCH-----HH------------
Confidence 433 33332222 233457899999999999999999999999999999988 55554431 11
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--eEEEc-cCcE
Q 014522 253 VDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG--QAELI-NGEK 327 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~v~~~-~g~~ 327 (423)
...+.+.+++.+|+++.+ +.+++.+ .+.+. ++.+
T Consensus 202 -----------------------------------------~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~ 240 (441)
T PRK08010 202 -----------------------------------------ADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ 240 (441)
T ss_pred -----------------------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe
Confidence 112344456778898876 6776643 34332 2346
Q ss_pred ecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHHHHHHHHhh
Q 014522 328 LDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAMRIAQDIGK 399 (423)
Q Consensus 328 ~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~~~a~~i~~ 399 (423)
+++|.|++|+|.+|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||++... .|..+|+.++.+|.+
T Consensus 241 i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 241 LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred EEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 8999999999999998433 556677 5668999998 578899999999999998644 688999999999975
No 15
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=8.5e-33 Score=272.63 Aligned_cols=302 Identities=15% Similarity=0.141 Sum_probs=204.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCC-cccc------CCCCCCCCCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPK-QFCQ------LPKLQFPEDFPEY 91 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~ 91 (423)
.+|||+||||||+|+++|..|+++|.+|+|||+.+.+||+|... ..+...+.... .+.. +..+..+ ..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~----~~ 79 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK----LR 79 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc----Cc
Confidence 46899999999999999999999999999999988899987543 22221110000 0000 0000100 11
Q ss_pred CCHHHHH-----------HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 92 PTKRQFI-----------QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 92 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
.+...+. +++...+.+.+++++.+. +..++ . +.+.|...+ +....++||+||+||| +
T Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~-----g~~~~~~~d~lviATG--s 147 (461)
T PRK05249 80 ITFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD--P--HTVEVECPD-----GEVETLTADKIVIATG--S 147 (461)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec--C--CEEEEEeCC-----CceEEEEcCEEEEcCC--C
Confidence 1222222 334455566677766553 33332 2 455565543 1225799999999999 7
Q ss_pred CCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHH
Q 014522 161 ERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFEL 240 (423)
Q Consensus 161 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~ 240 (423)
.|..|.+++... ..++.. +........+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++..+. +
T Consensus 148 ~p~~p~~~~~~~--~~v~~~-~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~- 217 (461)
T PRK05249 148 RPYRPPDVDFDH--PRIYDS-DSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDD-----E- 217 (461)
T ss_pred CCCCCCCCCCCC--CeEEcH-HHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCH-----H-
Confidence 888776655432 122222 2222233457999999999999999999999999999999988 45443321 1
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--
Q 014522 241 ATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS-- 316 (423)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~-- 316 (423)
....+.+.+++.+|+++.+ +.++.
T Consensus 218 ----------------------------------------------------~~~~l~~~l~~~gI~v~~~~~v~~i~~~ 245 (461)
T PRK05249 218 ----------------------------------------------------ISDALSYHLRDSGVTIRHNEEVEKVEGG 245 (461)
T ss_pred ----------------------------------------------------HHHHHHHHHHHcCCEEEECCEEEEEEEe
Confidence 1112334455668888876 66665
Q ss_pred CCe--EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccchh
Q 014522 317 CGQ--AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSD 389 (423)
Q Consensus 317 ~~~--v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 389 (423)
.++ +.+.+|+++++|.||+|+|++|++..+ ++..++ .+++|++.+| .+++|+.|+|||+|||++... .|.+|
T Consensus 246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~ 324 (461)
T PRK05249 246 DDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQ 324 (461)
T ss_pred CCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHH
Confidence 333 445678899999999999999998443 667777 5678999998 578899999999999996533 68999
Q ss_pred HHHHHHHHhhh
Q 014522 390 AMRIAQDIGKV 400 (423)
Q Consensus 390 g~~~a~~i~~~ 400 (423)
|+.+|.+|.+.
T Consensus 325 g~~aa~~i~g~ 335 (461)
T PRK05249 325 GRIAAQHAVGE 335 (461)
T ss_pred HHHHHHHHcCC
Confidence 99999999854
No 16
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=5.4e-33 Score=271.21 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=197.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
|.+|+|||||++|+++|..|+++ +.+|+|||+++.++ + ... .++.+. . ..........
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~-----~~~---------~lp~~~---~-~~~~~~~~~~ 60 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--F-----ANC---------ALPYYI---G-EVVEDRKYAL 60 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--c-----ccC---------Ccchhh---c-CccCCHHHcc
Confidence 34899999999999999999987 57999999987543 1 000 001000 0 0001122222
Q ss_pred HHH-HHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCcee
Q 014522 99 QYL-ESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177 (423)
Q Consensus 99 ~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~ 177 (423)
.+. ..+.++.+++++.+++|++++.+. +. |.+.+..+ ++...+.||+||+||| +.|..|.+++. .+
T Consensus 61 ~~~~~~~~~~~~i~v~~~~~V~~Id~~~--~~--v~~~~~~~--~~~~~~~yd~lviAtG--s~~~~~~~~~~-----~~ 127 (438)
T PRK13512 61 AYTPEKFYDRKQITVKTYHEVIAINDER--QT--VTVLNRKT--NEQFEESYDKLILSPG--ASANSLGFESD-----IT 127 (438)
T ss_pred cCCHHHHHHhCCCEEEeCCEEEEEECCC--CE--EEEEECCC--CcEEeeecCEEEECCC--CCCCCCCCCCC-----Ce
Confidence 222 334456789999999999998876 66 44433111 1224579999999999 77776654321 11
Q ss_pred eecCCCCCC-------CCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccH
Q 014522 178 IHACDYKSG-------EKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPL 250 (423)
Q Consensus 178 ~~~~~~~~~-------~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (423)
+......+. ....+++++|||+|.+|+|+|..|++.|.+|+++.+++ .+++..+.
T Consensus 128 ~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~----------------- 189 (438)
T PRK13512 128 FTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDA----------------- 189 (438)
T ss_pred EEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCH-----------------
Confidence 111111000 12246899999999999999999999999999999988 34333221
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCeEEEccCcEe
Q 014522 251 WLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQAELINGEKL 328 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~v~~~~g~~~ 328 (423)
.....+.+.+++.+|+++.+ +.+++...+++++|+++
T Consensus 190 -----------------------------------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~ 228 (438)
T PRK13512 190 -----------------------------------------DMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVE 228 (438)
T ss_pred -----------------------------------------HHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEE
Confidence 11112344466778999876 88888777888889999
Q ss_pred cccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc----------CC---CcchhHHHHH
Q 014522 329 DIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG----------LS---GASSDAMRIA 394 (423)
Q Consensus 329 ~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----------~~---~a~~~g~~~a 394 (423)
++|.|++|+|++||. .+++..++ .+++|++.+| ++++|+.|+|||+|||+.. .. .|.+||+.+|
T Consensus 229 ~~D~vl~a~G~~pn~-~~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a 306 (438)
T PRK13512 229 HYDMIIEGVGTHPNS-KFIESSNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVA 306 (438)
T ss_pred EeCEEEECcCCCcCh-HHHHhcCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHH
Confidence 999999999999998 67788887 5667988888 5788999999999999852 11 4678899999
Q ss_pred HHHhh
Q 014522 395 QDIGK 399 (423)
Q Consensus 395 ~~i~~ 399 (423)
+||.+
T Consensus 307 ~ni~g 311 (438)
T PRK13512 307 EQIAG 311 (438)
T ss_pred HHhcC
Confidence 99976
No 17
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-32 Score=263.39 Aligned_cols=282 Identities=21% Similarity=0.303 Sum_probs=199.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQF 97 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (423)
|+++|+|||||+||+++|..|++.+ .+|+||++++... |....+ +..........++
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--------------~~~~~~~~~~~~~ 59 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--------------SHVFSQGQRADDL 59 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--------------cHHHhCCCCHHHh
Confidence 3569999999999999999999874 6999999876321 111100 0011111233444
Q ss_pred HH-HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCce
Q 014522 98 IQ-YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGE 176 (423)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~ 176 (423)
.. ...+++++++++++.+++|++++.+. .. ++++ + ..+.||+||+||| +.|..|.+||.+.
T Consensus 60 ~~~~~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~-------~-~~~~yd~LVlATG--~~~~~p~i~G~~~---- 121 (377)
T PRK04965 60 TRQSAGEFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQ-------G-NQWQYDKLVLATG--ASAFVPPIPGREL---- 121 (377)
T ss_pred hcCCHHHHHHhCCCEEECCCEEEEEECCC--CE--EEEC-------C-eEEeCCEEEECCC--CCCCCCCCCCCce----
Confidence 33 24566777899999999999998754 43 5553 3 5899999999999 7888888888653
Q ss_pred eeecCCCC-----CCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHH
Q 014522 177 VIHACDYK-----SGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW 251 (423)
Q Consensus 177 ~~~~~~~~-----~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (423)
++...... ......+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++... +.
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~----------------~~- 183 (377)
T PRK04965 122 MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLM----------------PP- 183 (377)
T ss_pred EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhC----------------CH-
Confidence 22211111 1112346899999999999999999999999999999988 3333211 11
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC----eEEEccC
Q 014522 252 LVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG----QAELING 325 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----~v~~~~g 325 (423)
.....+.+.+++.+|+++.+ +.++..+ .+.+.+|
T Consensus 184 ----------------------------------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g 223 (377)
T PRK04965 184 ----------------------------------------EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSG 223 (377)
T ss_pred ----------------------------------------HHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCC
Confidence 11112344455678888765 7777653 2667889
Q ss_pred cEecccEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeecccc-------CCCcchhHHHHHHHHh
Q 014522 326 EKLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRG-------LSGASSDAMRIAQDIG 398 (423)
Q Consensus 326 ~~~~~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~g~~~a~~i~ 398 (423)
+++++|.||+|+|..|+. .+++..++..++| +.+| ++++|+.|+|||+|||+.. ...|..||+.+|.||.
T Consensus 224 ~~i~~D~vI~a~G~~p~~-~l~~~~gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 224 RSIEVDAVIAAAGLRPNT-ALARRAGLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL 300 (377)
T ss_pred cEEECCEEEECcCCCcch-HHHHHCCCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc
Confidence 999999999999999997 6777777755567 6677 4788999999999999852 2258899999999998
Q ss_pred hhh
Q 014522 399 KVW 401 (423)
Q Consensus 399 ~~l 401 (423)
+.-
T Consensus 301 g~~ 303 (377)
T PRK04965 301 GQN 303 (377)
T ss_pred CCC
Confidence 754
No 18
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=5.6e-32 Score=270.64 Aligned_cols=289 Identities=21% Similarity=0.296 Sum_probs=209.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.+|||+||||||||++||..|++.|++|+|||+. ..||.+... .....++.. .......+.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~----------~~i~~~pg~-------~~~~~~~l~~ 64 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITIT----------SEVVNYPGI-------LNTTGPELMQ 64 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEec----------cccccCCCC-------cCCCHHHHHH
Confidence 4689999999999999999999999999999996 566654321 000011111 1235677888
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
++.+.++++++++ .+++|+.++... ..+.+.+.+ + .+.+++||+||| +.|+.|.+||...+.+..++
T Consensus 65 ~l~~~~~~~gv~~-~~~~V~~i~~~~--~~~~V~~~~------g--~~~a~~lVlATG--a~p~~~~ipG~~~~~~~~v~ 131 (555)
T TIGR03143 65 EMRQQAQDFGVKF-LQAEVLDVDFDG--DIKTIKTAR------G--DYKTLAVLIATG--ASPRKLGFPGEEEFTGRGVA 131 (555)
T ss_pred HHHHHHHHcCCEE-eccEEEEEEecC--CEEEEEecC------C--EEEEeEEEECCC--CccCCCCCCCHHHhCCceEE
Confidence 8888888899886 477888888754 556666654 3 589999999999 67888889987655444444
Q ss_pred cCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHH
Q 014522 180 ACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLI 259 (423)
Q Consensus 180 ~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (423)
.+..++.....+++++|||+|.+|+|+|..|++.|.+|+++.|.+. +.... . .
T Consensus 132 ~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~-~~~~~-------~------------~------- 184 (555)
T TIGR03143 132 YCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD-FTCAK-------L------------I------- 184 (555)
T ss_pred EEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc-cccCH-------H------------H-------
Confidence 4444444455789999999999999999999999999999999873 11000 0 0
Q ss_pred HHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe----EEE---ccCcE---
Q 014522 260 LAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ----AEL---INGEK--- 327 (423)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----v~~---~~g~~--- 327 (423)
........+|+++.+ +.++..++ +.+ .+|++
T Consensus 185 -------------------------------------~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~ 227 (555)
T TIGR03143 185 -------------------------------------AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEY 227 (555)
T ss_pred -------------------------------------HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEE
Confidence 011122357888766 67776542 222 34653
Q ss_pred -ecccE----EEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc----CCCcchhHHHHHHHH
Q 014522 328 -LDIDA----IVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG----LSGASSDAMRIAQDI 397 (423)
Q Consensus 328 -~~~D~----vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~g~~~a~~i 397 (423)
+++|. ||+|+|+.|++ .|++. ++ .+++|++.+| .+++|+.|+|||+|||+.. ...|+.||+.+|.+|
T Consensus 228 ~~~~D~~~~~Vi~a~G~~Pn~-~l~~~-~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 228 KAPKDAGTFGVFVFVGYAPSS-ELFKG-VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred eccccccceEEEEEeCCCCCh-hHHhh-hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence 34676 99999999998 56554 34 5668999888 5788999999999999742 347999999999999
Q ss_pred hhhhHHHHH
Q 014522 398 GKVWKEETK 406 (423)
Q Consensus 398 ~~~l~~~~~ 406 (423)
.+++.....
T Consensus 305 ~~~l~~~~~ 313 (555)
T TIGR03143 305 ERYVKELKE 313 (555)
T ss_pred HHHHHhhhh
Confidence 999987665
No 19
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=7.9e-33 Score=272.70 Aligned_cols=300 Identities=21% Similarity=0.274 Sum_probs=199.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCCcc--------ccCCCCCCCCCCCCC-
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPKQF--------CQLPKLQFPEDFPEY- 91 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 91 (423)
|||+||||||+|+++|..|+++|.+|+|||+.. +||+|-+. +.|...+...... +.+......-++...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999875 78876542 2221111000000 000000000011111
Q ss_pred CCHHHHHHH-----HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCC
Q 014522 92 PTKRQFIQY-----LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPD 166 (423)
Q Consensus 92 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~ 166 (423)
...+++... +...+++.+++++.++ +..++ . .. |.+.+ +...+.+|+||+||| +.|..|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~~--~--~~--v~v~~------g~~~~~~~~lIiATG--s~p~~p~ 144 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFKD--P--KT--VKVDL------GREVRGAKRFLIATG--ARPAIPP 144 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEcc--C--CE--EEEcC------CeEEEEeCEEEEcCC--CCCCCCC
Confidence 112233222 2345566677765443 32221 1 33 66544 335689999999999 8888898
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHh
Q 014522 167 IEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMK 246 (423)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 246 (423)
+||.+... ++++.+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+. ++
T Consensus 145 i~G~~~~~--~~~~~~~~~-~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~------ 209 (463)
T TIGR02053 145 IPGLKEAG--YLTSEEALA-LDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEP-----EI------ 209 (463)
T ss_pred CCCcccCc--eECchhhhC-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCH-----HH------
Confidence 99876532 233322222 22346899999999999999999999999999999998 45554321 11
Q ss_pred hccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--e--E
Q 014522 247 WLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG--Q--A 320 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~--v 320 (423)
...+.+.+++.+|+++.+ +.++..+ . +
T Consensus 210 -----------------------------------------------~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v 242 (463)
T TIGR02053 210 -----------------------------------------------SAAVEEALAEEGIEVVTSAQVKAVSVRGGGKII 242 (463)
T ss_pred -----------------------------------------------HHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEE
Confidence 111234455668888876 6666543 2 3
Q ss_pred EEc---cCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHHH
Q 014522 321 ELI---NGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAMR 392 (423)
Q Consensus 321 ~~~---~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~~ 392 (423)
.+. +++++++|.||+|+|++|+...+ ++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|..||+.
T Consensus 243 ~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~ 321 (463)
T TIGR02053 243 TVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVV 321 (463)
T ss_pred EEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHH
Confidence 332 23589999999999999998545 677777 5678999998 678899999999999997643 79999999
Q ss_pred HHHHHhhh
Q 014522 393 IAQDIGKV 400 (423)
Q Consensus 393 ~a~~i~~~ 400 (423)
+|.+|.+.
T Consensus 322 aa~ni~~~ 329 (463)
T TIGR02053 322 AAENALGG 329 (463)
T ss_pred HHHHhcCC
Confidence 99999864
No 20
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.8e-33 Score=261.20 Aligned_cols=290 Identities=21% Similarity=0.226 Sum_probs=213.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQF 97 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (423)
++++|||||||++|+.+|..|.+.. .+|++||+.+... +..+... -..+..+..++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL~e---------------va~g~l~~~~i 59 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLLYE---------------VATGTLSESEI 59 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhhhh---------------hhcCCCChhhe
Confidence 4678999999999999999999985 8999999986421 1111111 01122344445
Q ss_pred HHHHHHHHHHcC-CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCce
Q 014522 98 IQYLESYAEKFE-INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGE 176 (423)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~ 176 (423)
.--++..+++.+ ++ +.+.+|++|+.+. +. |++.+ + ..+.||++|+|+| +.+..+.+||+.++.-.
T Consensus 60 ~~p~~~~~~~~~~v~-~~~~~V~~ID~~~--k~--V~~~~------~-~~i~YD~LVvalG--s~~~~fgi~G~~E~a~~ 125 (405)
T COG1252 60 AIPLRALLRKSGNVQ-FVQGEVTDIDRDA--KK--VTLAD------L-GEISYDYLVVALG--SETNYFGIPGAAEYAFG 125 (405)
T ss_pred eccHHHHhcccCceE-EEEEEEEEEcccC--CE--EEeCC------C-ccccccEEEEecC--CcCCcCCCCCHHHhCCC
Confidence 555566666445 55 5567799999877 66 88776 3 5899999999999 88888899998765321
Q ss_pred eeec-------------CCCCCCCCC--CCCEEEEECCCCCHHHHHHHHhccC-------------CccEEEEecCceee
Q 014522 177 VIHA-------------CDYKSGEKY--KGKKVLVVGCGNSGMELSLDLSNHN-------------ASPSMVVRSSVHVL 228 (423)
Q Consensus 177 ~~~~-------------~~~~~~~~~--~~~~v~ViG~G~~~~e~a~~l~~~g-------------~~V~~v~r~~~~~~ 228 (423)
.... .+..+.... ...+++|+|+|++|+|+|.+|++.. .+|+++.+.| .+|
T Consensus 126 lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~IL 204 (405)
T COG1252 126 LKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RIL 204 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhc
Confidence 1100 011110111 2237999999999999999998642 2789999999 677
Q ss_pred cccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEE
Q 014522 229 PREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINV 308 (423)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 308 (423)
|.... ++.. ...+.+++.+|++
T Consensus 205 p~~~~-----~l~~-----------------------------------------------------~a~~~L~~~GV~v 226 (405)
T COG1252 205 PMFPP-----KLSK-----------------------------------------------------YAERALEKLGVEV 226 (405)
T ss_pred cCCCH-----HHHH-----------------------------------------------------HHHHHHHHCCCEE
Confidence 76653 2222 2344567789999
Q ss_pred ecC--ceEEeCCeEEEccCcE-ecccEEEEcCCCCCCCCCccccc-ccc-cCCCCCCCCCCCCCCCCCceEEEeeccccC
Q 014522 309 VPG--IKRISCGQAELINGEK-LDIDAIVLATGYRSNVPSWLQES-EFF-SENGFPKAPFPHGWKGNAGLYAVGFTRRGL 383 (423)
Q Consensus 309 ~~~--i~~~~~~~v~~~~g~~-~~~D~vi~a~G~~~~~~~ll~~~-~~~-~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~ 383 (423)
..+ |+++++++|++++|.+ +++|.+|||+|.+++ .+++++ ++. ++.|++++++.++.++.|+|||+|||+..+
T Consensus 227 ~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~--~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~ 304 (405)
T COG1252 227 LLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS--PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI 304 (405)
T ss_pred EcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC--hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCC
Confidence 987 9999999999999985 999999999999999 777774 664 567999999767778999999999998532
Q ss_pred ---------CCcchhHHHHHHHHhhhhHHHHH
Q 014522 384 ---------SGASSDAMRIAQDIGKVWKEETK 406 (423)
Q Consensus 384 ---------~~a~~~g~~~a~~i~~~l~~~~~ 406 (423)
+.|.+||..+|+||.+.+...+.
T Consensus 305 ~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l 336 (405)
T COG1252 305 DPRPVPPTAQAAHQQGEYAAKNIKARLKGKPL 336 (405)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 16999999999999999988443
No 21
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-32 Score=269.17 Aligned_cols=302 Identities=21% Similarity=0.275 Sum_probs=198.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc-ccCCceeecCCCcccc----CCCCCCCCCCCCCCCH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK-RTYDRLNLHLPKQFCQ----LPKLQFPEDFPEYPTK 94 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 94 (423)
..|||+||||||+|++||..|+++|.+|+|+|+.. +||+|.. ++.+...+......+. ...+..... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46899999999999999999999999999999976 8887643 3333221111100000 000000000 001233
Q ss_pred HHHHHH-----------HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 95 RQFIQY-----------LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 95 ~~~~~~-----------~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
..+.+| +....++.+++++.++ ++.++. ..+.+...+ +...++||+||+||| +.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~----~~~~v~~~~------~~~~~~~d~lViAtG--s~p~ 147 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVDP----NTVRVMTED------GEQTYTAKNIILATG--SRPR 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC----CEEEEecCC------CcEEEEeCEEEEeCC--CCCC
Confidence 444444 3344555677766553 433321 343344322 226899999999999 6665
Q ss_pred CCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHH
Q 014522 164 MPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATL 243 (423)
Q Consensus 164 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~ 243 (423)
.| ||+... +..+++++........+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|.... +
T Consensus 148 ~~--pg~~~~-~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~---- 214 (462)
T PRK06416 148 EL--PGIEID-GRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK-----E---- 214 (462)
T ss_pred CC--CCCCCC-CCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH-----H----
Confidence 43 454322 22233333222233456899999999999999999999999999999988 45454321 1
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--e
Q 014522 244 MMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG--Q 319 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~ 319 (423)
....+.+.+++.+|+++.+ +.++..+ +
T Consensus 215 -------------------------------------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~ 245 (462)
T PRK06416 215 -------------------------------------------------ISKLAERALKKRGIKIKTGAKAKKVEQTDDG 245 (462)
T ss_pred -------------------------------------------------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCE
Confidence 1112234455678888877 7777643 3
Q ss_pred --EEEccC---cEecccEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhH
Q 014522 320 --AELING---EKLDIDAIVLATGYRSNVPSW-LQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDA 390 (423)
Q Consensus 320 --v~~~~g---~~~~~D~vi~a~G~~~~~~~l-l~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g 390 (423)
+.+.++ +++++|.||+|+|++|+...+ ++..++..++|++.+| ++++|+.|+|||+|||+.... .|..||
T Consensus 246 v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g 324 (462)
T PRK06416 246 VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEG 324 (462)
T ss_pred EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHH
Confidence 344555 679999999999999998443 4566773338988888 578899999999999986543 689999
Q ss_pred HHHHHHHhh
Q 014522 391 MRIAQDIGK 399 (423)
Q Consensus 391 ~~~a~~i~~ 399 (423)
+.+|.||.+
T Consensus 325 ~~aa~ni~~ 333 (462)
T PRK06416 325 IIAAEAIAG 333 (462)
T ss_pred HHHHHHHcC
Confidence 999999986
No 22
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.1e-32 Score=257.54 Aligned_cols=308 Identities=33% Similarity=0.514 Sum_probs=234.6
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc--------c-CCceeecCCCccccCCCCCCCCCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR--------T-YDRLNLHLPKQFCQLPKLQFPEDFP 89 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (423)
.+.++|+|||||+|||++|+.|.+.|++++++||.+.+||+|... . |+.++++.++.++.+++++++++.+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 467899999999999999999999999999999999999999886 5 9999999999999999999999855
Q ss_pred C-CCCHHHHHHHHHHHHHHcCCc--eeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCC
Q 014522 90 E-YPTKRQFIQYLESYAEKFEIN--PRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPD 166 (423)
Q Consensus 90 ~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~ 166 (423)
. +++..++.+||+++|+++++. +.++++|..++...+ +.|.|.+.+..+ +.....+|.||+|||.+..|.+|.
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~---~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGT---QIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCc---ceeEEEeeEEEEcccCcCCCCCCc
Confidence 5 489999999999999999986 567777777766543 699999987432 136889999999999986699999
Q ss_pred CCC--CCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC-ceeecccccCCChHHHHHH
Q 014522 167 IEG--LADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS-VHVLPREILGKSTFELATL 243 (423)
Q Consensus 167 ~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~-~~~~~~~~~~~~~~~~~~~ 243 (423)
++| .+.+.|.++|+.++.....+.+++|+|||.|.+|+|++..++..+.+|++..+++ ....+..
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~------------ 227 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPE------------ 227 (448)
T ss_pred CCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccc------------
Confidence 988 6689999999999999999999999999999999999999999888888876620 0010100
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecCceEEeCCe-EEE
Q 014522 244 MMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPGIKRISCGQ-AEL 322 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~-v~~ 322 (423)
....++..+..|+.+++++ +.+
T Consensus 228 ---------------------------------------------------------~~~~~~~~~~~i~~~~e~~~~~~ 250 (448)
T KOG1399|consen 228 ---------------------------------------------------------ILGENLWQVPSIKSFTEDGSVFE 250 (448)
T ss_pred ---------------------------------------------------------eeecceEEccccccccCcceEEE
Confidence 0012333334477777888 445
Q ss_pred ccCcEecccEEEEcCCCCCCCCCcccccc--cc-cCCCCCCCCCCCCCC--CCCceEEEeecc--ccCCCcchhHHHHHH
Q 014522 323 INGEKLDIDAIVLATGYRSNVPSWLQESE--FF-SENGFPKAPFPHGWK--GNAGLYAVGFTR--RGLSGASSDAMRIAQ 395 (423)
Q Consensus 323 ~~g~~~~~D~vi~a~G~~~~~~~ll~~~~--~~-~~~g~~~~~~~~~~~--~~~~vya~Gd~~--~~~~~a~~~g~~~a~ 395 (423)
.++....+|.+|+|||+.-.. .+++..+ .. ++...+... +... ..++...+|.-. ........|+++++.
T Consensus 251 ~~~~~~~~D~ii~ctgy~y~f-Pfl~~~~~~~~~~~~~~pl~k--~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~ 327 (448)
T KOG1399|consen 251 KGGPVERVDRIIFCTGYKYKF-PFLETLGLGTVRDNIVGPLYK--KVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAA 327 (448)
T ss_pred cCceeEEeeeEEEeeeeEeec-ceeccCCceeeccCcccchhe--eccchhhCccccccccCeeeEeecceehhhhhhHh
Confidence 566788999999999999987 5555543 22 222122211 1111 223433333222 344467788888888
Q ss_pred HHhhhhH
Q 014522 396 DIGKVWK 402 (423)
Q Consensus 396 ~i~~~l~ 402 (423)
-+.+...
T Consensus 328 v~~G~~~ 334 (448)
T KOG1399|consen 328 VLEGRLK 334 (448)
T ss_pred hhcCCCc
Confidence 8877643
No 23
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=2.1e-32 Score=269.56 Aligned_cols=298 Identities=16% Similarity=0.195 Sum_probs=198.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccC-Cceee-cCCCcc-----ccCCCCCCCCCCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTY-DRLNL-HLPKQF-----CQLPKLQFPEDFPEYP 92 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~-~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~ 92 (423)
.++||+||||||+|+++|..|+++|.+|+|||+. .+||.|.+..+ +...+ ...... ......+.+.. . ..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~-~~ 80 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP-V-SV 80 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc-C-cc
Confidence 4689999999999999999999999999999986 56776544221 11110 000000 00011110000 0 01
Q ss_pred CHHHHH-----------HHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 93 TKRQFI-----------QYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 93 ~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
....+. ..+....++. +++++.++.+. .+. .. |++. + .++.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~--~~--v~v~-------~-~~~~~d~lViATG--s 143 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESP--NT--VRVG-------G-ETLRAKRIFINTG--A 143 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccC--CE--EEEC-------c-EEEEeCEEEEcCC--C
Confidence 222222 2233444444 67766665431 111 33 5553 3 5799999999999 8
Q ss_pred CCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHH
Q 014522 161 ERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFEL 240 (423)
Q Consensus 161 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~ 240 (423)
.|..|.+||++.. .++...+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++.... ++
T Consensus 144 ~p~~p~i~G~~~~--~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~-----~~ 214 (463)
T PRK06370 144 RAAIPPIPGLDEV--GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDE-----DV 214 (463)
T ss_pred CCCCCCCCCCCcC--ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCH-----HH
Confidence 8999999987642 1233332222 22457899999999999999999999999999999988 45443321 11
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC
Q 014522 241 ATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG 318 (423)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~ 318 (423)
...+.+.+++.+|+++.+ +.++..+
T Consensus 215 -----------------------------------------------------~~~l~~~l~~~GV~i~~~~~V~~i~~~ 241 (463)
T PRK06370 215 -----------------------------------------------------AAAVREILEREGIDVRLNAECIRVERD 241 (463)
T ss_pred -----------------------------------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence 111234455678888876 6676643
Q ss_pred --e--EEEc---cCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Cc
Q 014522 319 --Q--AELI---NGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GA 386 (423)
Q Consensus 319 --~--v~~~---~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a 386 (423)
+ +.+. ++.++++|.||+|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|
T Consensus 242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A 320 (463)
T PRK06370 242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTA 320 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHH
Confidence 2 3332 34579999999999999998545 677777 5678999998 578899999999999987543 68
Q ss_pred chhHHHHHHHHhhh
Q 014522 387 SSDAMRIAQDIGKV 400 (423)
Q Consensus 387 ~~~g~~~a~~i~~~ 400 (423)
..||+++|+||.+.
T Consensus 321 ~~~g~~aa~ni~~~ 334 (463)
T PRK06370 321 YNDARIVAANLLDG 334 (463)
T ss_pred HHHHHHHHHHHhCC
Confidence 89999999999864
No 24
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-32 Score=266.88 Aligned_cols=303 Identities=17% Similarity=0.165 Sum_probs=194.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceee-cCCCccc---cCCCCCCCCCCCCCCCH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNL-HLPKQFC---QLPKLQFPEDFPEYPTK 94 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 94 (423)
.+|||+||||||+|+++|..|+++|.+|+|||+.+.+||+|.+. +.|...+ .....+. ....+....... ...-
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~ 81 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP-KIDI 81 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC-CcCH
Confidence 46899999999999999999999999999999987888876443 2222111 1000000 000000000000 0111
Q ss_pred HHHHH-----------HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 95 RQFIQ-----------YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 95 ~~~~~-----------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
..+.+ .....+++.+++++.+. +.-++ . ....|...+ ++...+.||+||+||| +.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~--~--~~v~v~~~~-----g~~~~~~~d~lViATG--s~p~ 149 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG--G--NTLEVTGED-----GKTTVIEFDNAIIAAG--SRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCC-----CceEEEEcCEEEEeCC--CCCC
Confidence 22222 22344555677766553 32221 2 454454433 1235799999999999 7776
Q ss_pred -CCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 164 -MPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 164 -~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
.|.+++... .++.+.+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+. ++..
T Consensus 150 ~~p~~~~~~~---~v~~~~~~~~-~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~-----~~~~ 219 (471)
T PRK06467 150 QLPFIPHDDP---RIWDSTDALE-LKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK-----DIVK 219 (471)
T ss_pred CCCCCCCCCC---cEEChHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH-----HHHH
Confidence 344444221 2233322222 22346899999999999999999999999999999998 55554432 1111
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CC
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CG 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~ 318 (423)
.+.+.+++. ++++.+ +.++. ++
T Consensus 220 -----------------------------------------------------~~~~~l~~~-v~i~~~~~v~~i~~~~~ 245 (471)
T PRK06467 220 -----------------------------------------------------VFTKRIKKQ-FNIMLETKVTAVEAKED 245 (471)
T ss_pred -----------------------------------------------------HHHHHHhhc-eEEEcCCEEEEEEEcCC
Confidence 123334344 777665 55554 23
Q ss_pred e--EEEccC----cEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccc
Q 014522 319 Q--AELING----EKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GAS 387 (423)
Q Consensus 319 ~--v~~~~g----~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~ 387 (423)
+ +.+.++ +++++|.||+|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||++.+. .|.
T Consensus 246 ~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~ 324 (471)
T PRK06467 246 GIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGV 324 (471)
T ss_pred EEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHH
Confidence 3 333332 369999999999999998443 456677 5678999998 578899999999999986533 799
Q ss_pred hhHHHHHHHHhhh
Q 014522 388 SDAMRIAQDIGKV 400 (423)
Q Consensus 388 ~~g~~~a~~i~~~ 400 (423)
+||+.+|.+|.+.
T Consensus 325 ~eG~~aa~~i~g~ 337 (471)
T PRK06467 325 HEGHVAAEVIAGK 337 (471)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999864
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.5e-32 Score=266.54 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=199.8
Q ss_pred ccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccC-CceeecCCCcc-ccCCCCC----CCCCCCCC
Q 014522 18 CIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTY-DRLNLHLPKQF-CQLPKLQ----FPEDFPEY 91 (423)
Q Consensus 18 ~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~-~~~~~~~~~~~-~~~~~~~----~~~~~~~~ 91 (423)
++..+||+|||||++|+++|..|++.|.+|+|||+. .+||+|.+..+ |...+...... ......+ .+...+.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~- 80 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV- 80 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc-
Confidence 357899999999999999999999999999999986 68998865322 11100000000 0000000 0000000
Q ss_pred CCHHHHHHHHHHHHH------------Hc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 92 PTKRQFIQYLESYAE------------KF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~------------~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
.+...+.++..+... +. ++++.. .++..++ . ..|.|++.+ ++..+++||+||+|||
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~-g~v~~id--~--~~~~V~~~~-----g~~~~~~~d~lViATG- 149 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLN-GEARFVD--E--RTLTVTLND-----GGEQTVHFDRAFIGTG- 149 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEE-EEEEEec--C--CEEEEEecC-----CCeEEEECCEEEEeCC-
Confidence 123333333222211 11 344333 3455553 2 567788765 1235799999999999
Q ss_pred CCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChH
Q 014522 159 NAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTF 238 (423)
Q Consensus 159 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~ 238 (423)
+.|..|++||++... .+++.+.. .....+++++|||+|.+|+|+|..|++.|.+|+++.+.. ++|....
T Consensus 150 -s~p~~p~i~G~~~~~--~~~~~~~~-~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~--~l~~~~~----- 218 (468)
T PRK14694 150 -ARPAEPPVPGLAETP--YLTSTSAL-ELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSR--VLSQEDP----- 218 (468)
T ss_pred -CCCCCCCCCCCCCCc--eEcchhhh-chhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC--CCCCCCH-----
Confidence 889899999976531 23322221 222346899999999999999999999999999998743 3343221
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe
Q 014522 239 ELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS 316 (423)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~ 316 (423)
+ ....+.+.+++.+|+++.+ +.++.
T Consensus 219 ~-----------------------------------------------------~~~~l~~~l~~~GI~v~~~~~v~~i~ 245 (468)
T PRK14694 219 A-----------------------------------------------------VGEAIEAAFRREGIEVLKQTQASEVD 245 (468)
T ss_pred H-----------------------------------------------------HHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 1 1112344455678888876 66665
Q ss_pred CCe--EEE-ccCcEecccEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccchh
Q 014522 317 CGQ--AEL-INGEKLDIDAIVLATGYRSNVPSW-LQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSD 389 (423)
Q Consensus 317 ~~~--v~~-~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 389 (423)
.++ +.+ .++.++++|.||+|+|.+|+...+ ++.+++..++|++.+| ++++|+.|+|||+|||+.... .|..|
T Consensus 246 ~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~ 324 (468)
T PRK14694 246 YNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAG 324 (468)
T ss_pred EcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHH
Confidence 432 222 234579999999999999998433 4556775568989888 578899999999999987543 68899
Q ss_pred HHHHHHHHhhh
Q 014522 390 AMRIAQDIGKV 400 (423)
Q Consensus 390 g~~~a~~i~~~ 400 (423)
|+.+|.+|.+.
T Consensus 325 G~~aa~~i~~~ 335 (468)
T PRK14694 325 GSRAAINMTGG 335 (468)
T ss_pred HHHHHHHhcCC
Confidence 99999999754
No 26
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=6.8e-32 Score=264.71 Aligned_cols=308 Identities=14% Similarity=0.143 Sum_probs=196.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc-CCCEEEEecC--------CCCCcccccccCCceee--cCCC--------ccccCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ-GVPFVMLERA--------ECIASLWQKRTYDRLNL--HLPK--------QFCQLP 80 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~-g~~v~lie~~--------~~~gg~~~~~~~~~~~~--~~~~--------~~~~~~ 80 (423)
..|||+|||||++|..+|..++++ |.+|+|||+. ..+||++-+..+-..+. .... ..+.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 478999999999999999999997 8999999974 46888765532211111 0000 000110
Q ss_pred CC--CCCCCCCCCC-CHHHHHH----HHHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEE
Q 014522 81 KL--QFPEDFPEYP-TKRQFIQ----YLESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWL 152 (423)
Q Consensus 81 ~~--~~~~~~~~~~-~~~~~~~----~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~v 152 (423)
.. ...-+|.... ..+.+.+ ......+. .+++++.+. . .+. +.....|.... .++.++.+.++||+|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a---~f~-~~~~v~V~~~~-~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-G---ALE-DKNVVLVRESA-DPKSAVKERLQAEHI 155 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-E---EEc-cCCEEEEeecc-CCCCCcceEEECCEE
Confidence 00 0000111111 1111111 12222333 255544433 1 111 11443333211 000001257999999
Q ss_pred EEccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhcc---CCccEEEEecCceeec
Q 014522 153 VVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNH---NASPSMVVRSSVHVLP 229 (423)
Q Consensus 153 viAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~---g~~V~~v~r~~~~~~~ 229 (423)
|+||| +.|..|.+||.+.. +.+.+... ....+++++|||+|.+|+|+|..+... |.+|+++.+.+ .++|
T Consensus 156 IIATG--s~p~~p~i~G~~~~----~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~il~ 227 (486)
T TIGR01423 156 LLATG--SWPQMLGIPGIEHC----ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MILR 227 (486)
T ss_pred EEecC--CCCCCCCCCChhhe----echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-cccc
Confidence 99999 78888888886531 22222111 223578999999999999999877654 89999999988 4545
Q ss_pred ccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEe
Q 014522 230 REILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVV 309 (423)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 309 (423)
..+. .....+.+.+++.+|+++
T Consensus 228 ~~d~----------------------------------------------------------~~~~~l~~~L~~~GI~i~ 249 (486)
T TIGR01423 228 GFDS----------------------------------------------------------TLRKELTKQLRANGINIM 249 (486)
T ss_pred ccCH----------------------------------------------------------HHHHHHHHHHHHcCCEEE
Confidence 4332 112223445666788888
Q ss_pred cC--ceEEeC--C---eEEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeecc
Q 014522 310 PG--IKRISC--G---QAELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTR 380 (423)
Q Consensus 310 ~~--i~~~~~--~---~v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~ 380 (423)
.+ +.++.. + .+.+.+|+++++|.||+|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||+
T Consensus 250 ~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~GDv~ 328 (486)
T TIGR01423 250 TNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD-EFSRTNVPNIYAIGDVT 328 (486)
T ss_pred cCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC-CCCcCCCCCEEEeeecC
Confidence 77 667653 2 2566788899999999999999998443 566777 5678999998 57789999999999999
Q ss_pred ccCC---CcchhHHHHHHHHhhh
Q 014522 381 RGLS---GASSDAMRIAQDIGKV 400 (423)
Q Consensus 381 ~~~~---~a~~~g~~~a~~i~~~ 400 (423)
+... .|.+||+.+|+||.+.
T Consensus 329 ~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 329 DRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CCcccHHHHHHHHHHHHHHHhCC
Confidence 7644 7899999999999753
No 27
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.9e-32 Score=281.51 Aligned_cols=285 Identities=19% Similarity=0.206 Sum_probs=205.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ----GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQ 96 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (423)
..+|||||+|++|+.+|..|+++ +++|+||++.+.++ |....+... +.. ....+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~~--------------~~~-~~~~~ 60 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSSY--------------FSH-HTAEE 60 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchHh--------------HcC-CCHHH
Confidence 34899999999999999999875 47999999987653 322222100 000 12223
Q ss_pred HHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCce
Q 014522 97 FIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGE 176 (423)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~ 176 (423)
+........++.+++++.++.|+.++... .. |++.+ + ..+.||+||+||| +.|..|.+||.+.....
T Consensus 61 l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~--V~~~~------G-~~i~yD~LVIATG--s~p~~p~ipG~~~~~v~ 127 (847)
T PRK14989 61 LSLVREGFYEKHGIKVLVGERAITINRQE--KV--IHSSA------G-RTVFYDKLIMATG--SYPWIPPIKGSETQDCF 127 (847)
T ss_pred ccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cE--EEECC------C-cEEECCEEEECCC--CCcCCCCCCCCCCCCeE
Confidence 33333455666799999999999987654 33 66654 4 5799999999999 88988889987643222
Q ss_pred eeecCCCCC---CCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHH
Q 014522 177 VIHACDYKS---GEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253 (423)
Q Consensus 177 ~~~~~~~~~---~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (423)
.+.+.+... .....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ ++++...
T Consensus 128 ~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~l--------------------- 185 (847)
T PRK14989 128 VYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQL--------------------- 185 (847)
T ss_pred EECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhc---------------------
Confidence 222222111 112346899999999999999999999999999999988 3433211
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC------eEEEccC
Q 014522 254 DKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG------QAELING 325 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~------~v~~~~g 325 (423)
.+.....+.+.+++.+|+++.+ +.++..+ .+.++||
T Consensus 186 ------------------------------------d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG 229 (847)
T PRK14989 186 ------------------------------------DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG 229 (847)
T ss_pred ------------------------------------CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC
Confidence 1111122345566778999877 6777532 3677899
Q ss_pred cEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc-------CCCcchhHHHHHHHH
Q 014522 326 EKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG-------LSGASSDAMRIAQDI 397 (423)
Q Consensus 326 ~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~g~~~a~~i 397 (423)
+++++|.||+|+|++|++ .|++..++ .+++|.+.+| .+++|+.|+|||+|||+.. ...|..||+++|.+|
T Consensus 230 ~~i~~D~Vv~A~G~rPn~-~L~~~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i 307 (847)
T PRK14989 230 SELEVDFIVFSTGIRPQD-KLATQCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHL 307 (847)
T ss_pred CEEEcCEEEECCCcccCc-hHHhhcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHh
Confidence 999999999999999998 67888888 5668888888 5888999999999999853 125788999999999
Q ss_pred hhh
Q 014522 398 GKV 400 (423)
Q Consensus 398 ~~~ 400 (423)
.+.
T Consensus 308 ~g~ 310 (847)
T PRK14989 308 LGS 310 (847)
T ss_pred cCC
Confidence 864
No 28
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.7e-31 Score=263.42 Aligned_cols=304 Identities=16% Similarity=0.144 Sum_probs=196.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccccc-CCceeecCCCcc----ccCCCCCCCCCCCCCCCH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRT-YDRLNLHLPKQF----CQLPKLQFPEDFPEYPTK 94 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 94 (423)
..+|++|||||++|+++|..|+++|.+|+++|+.+.+||+|.+.. .+...+..+... ...+...++...+. ...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~-~~~ 93 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS-IDR 93 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc-cCH
Confidence 579999999999999999999999999999999888999987642 222111100000 00111111100011 112
Q ss_pred HHHHHHHHH------------HHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 95 RQFIQYLES------------YAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 95 ~~~~~~~~~------------~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
..+...... ..+.. ++++..+. ..+.+ .+.+.|...+ ++..++.||+||+||| +.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~----a~f~~-~~~v~v~~~~-----g~~~~~~~d~lViATG--s~ 161 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY----ARFKD-GNTLVVRLHD-----GGERVLAADRCLIATG--ST 161 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE----EEEec-CCEEEEEeCC-----CceEEEEeCEEEEecC--CC
Confidence 222221111 11111 34433322 12222 2566666544 1225799999999999 88
Q ss_pred CcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHH
Q 014522 162 RVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELA 241 (423)
Q Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~ 241 (423)
|..|.+||+.... .+...+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.. +++..+. +
T Consensus 162 p~~p~i~G~~~~~--~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~--~l~~~d~-----~-- 229 (479)
T PRK14727 162 PTIPPIPGLMDTP--YWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST--LLFREDP-----L-- 229 (479)
T ss_pred CCCCCCCCcCccc--eecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC--CCCcchH-----H--
Confidence 9999899875421 122222221 22346899999999999999999999999999998753 3333221 1
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--
Q 014522 242 TLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC-- 317 (423)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~-- 317 (423)
....+.+.+++.+|+++.+ +.++..
T Consensus 230 ---------------------------------------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~ 258 (479)
T PRK14727 230 ---------------------------------------------------LGETLTACFEKEGIEVLNNTQASLVEHDD 258 (479)
T ss_pred ---------------------------------------------------HHHHHHHHHHhCCCEEEcCcEEEEEEEeC
Confidence 1112334455678888876 666542
Q ss_pred CeEEE-ccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHH
Q 014522 318 GQAEL-INGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAM 391 (423)
Q Consensus 318 ~~v~~-~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~ 391 (423)
+++.+ .++.++++|.||+|+|+.||+..+ ++..++ .+++|.+.+| ++++|+.|+|||+|||+.... .|..||+
T Consensus 259 ~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~ 337 (479)
T PRK14727 259 NGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAGS 337 (479)
T ss_pred CEEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHHH
Confidence 33332 233469999999999999998444 566677 5668999998 578899999999999997533 7889999
Q ss_pred HHHHHHhhh
Q 014522 392 RIAQDIGKV 400 (423)
Q Consensus 392 ~~a~~i~~~ 400 (423)
.+|.+|.+.
T Consensus 338 ~aa~~i~g~ 346 (479)
T PRK14727 338 RAGINMTGG 346 (479)
T ss_pred HHHHHHcCC
Confidence 999999864
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.6e-31 Score=264.63 Aligned_cols=306 Identities=14% Similarity=0.179 Sum_probs=197.5
Q ss_pred cccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceee-cCCCcc--------ccCCCCCCCC
Q 014522 17 RCIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNL-HLPKQF--------CQLPKLQFPE 86 (423)
Q Consensus 17 ~~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~-~~~~~~--------~~~~~~~~~~ 86 (423)
+..+.|||+|||||++|+++|..+++.|.+|+|||+. .+||++-+. +-|...+ ...... +.+... ..-
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~-~~~ 121 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQ-FSF 121 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCcc-Ccc
Confidence 3357899999999999999999999999999999986 678865442 2222111 111100 111100 000
Q ss_pred CCCCCC-CHHHH----HHHHHHHHHHcCCceeccce-EEE---EE------------EeCCCCeEEEE------EcccCC
Q 014522 87 DFPEYP-TKRQF----IQYLESYAEKFEINPRFNEC-VQS---AR------------YDETSGLWRVK------TASSAG 139 (423)
Q Consensus 87 ~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~-v~~---v~------------~~~~~~~~~v~------~~~~~~ 139 (423)
++.... ..+.+ .+.+.+..++.+++++.+.. +.+ +. ..++ ....|. ..+
T Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~--- 197 (561)
T PTZ00058 122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDD-DEVTIVSAGVSQLDD--- 197 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeecccccccccccccc-ccceeeeccceecCC---
Confidence 111111 11222 22334445556777655542 111 00 0000 111121 111
Q ss_pred CCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEE
Q 014522 140 STKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSM 219 (423)
Q Consensus 140 ~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~ 219 (423)
+ ..++||+|||||| +.|..|.+||.+. ++.+.++.. .. .+++++|||+|.+|+|+|..|++.|.+|++
T Consensus 198 ---g-~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~-l~-~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl 265 (561)
T PTZ00058 198 ---G-QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFK-IK-EAKRIGIAGSGYIAVELINVVNRLGAESYI 265 (561)
T ss_pred ---C-cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhh-cc-CCCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence 3 5799999999999 8898888888642 222222222 11 278999999999999999999999999999
Q ss_pred EEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhh
Q 014522 220 VVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALK 299 (423)
Q Consensus 220 v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (423)
+.+.+ +++|..+. + ....+.+
T Consensus 266 i~~~~-~il~~~d~-----~-----------------------------------------------------i~~~l~~ 286 (561)
T PTZ00058 266 FARGN-RLLRKFDE-----T-----------------------------------------------------IINELEN 286 (561)
T ss_pred EEecc-cccccCCH-----H-----------------------------------------------------HHHHHHH
Confidence 99988 45454332 1 1112344
Q ss_pred hhhcCCeEEecC--ceEEeCC---eE--EEccC-cEecccEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCC
Q 014522 300 KIRSGHINVVPG--IKRISCG---QA--ELING-EKLDIDAIVLATGYRSNVPSW-LQESEFFSENGFPKAPFPHGWKGN 370 (423)
Q Consensus 300 ~~~~~~i~~~~~--i~~~~~~---~v--~~~~g-~~~~~D~vi~a~G~~~~~~~l-l~~~~~~~~~g~~~~~~~~~~~~~ 370 (423)
.+++.+|+++.+ +.+++.+ ++ .+.++ +++++|.|++|+|++|++..+ ++..++.+++|++.+| ++++|+.
T Consensus 287 ~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VD-e~lqTs~ 365 (561)
T PTZ00058 287 DMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD-DNQRTSV 365 (561)
T ss_pred HHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEEC-cCCccCC
Confidence 456678888876 6666642 22 33344 579999999999999998433 3444555668999998 5788999
Q ss_pred CceEEEeeccc----------------------------------cCC---CcchhHHHHHHHHhhh
Q 014522 371 AGLYAVGFTRR----------------------------------GLS---GASSDAMRIAQDIGKV 400 (423)
Q Consensus 371 ~~vya~Gd~~~----------------------------------~~~---~a~~~g~~~a~~i~~~ 400 (423)
|+|||+|||+. ... .|..||+++|.+|.+.
T Consensus 366 p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 366 KHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred CCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 99999999987 222 6899999999999864
No 30
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.8e-31 Score=259.86 Aligned_cols=297 Identities=19% Similarity=0.213 Sum_probs=193.7
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC-CCcccccc-cCCceeecCCCccccCCCCCCCCCCCCCC-CHH--
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAEC-IASLWQKR-TYDRLNLHLPKQFCQLPKLQFPEDFPEYP-TKR-- 95 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~-~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 95 (423)
.|||+||||||||++||..|+++|.+|+|||+.+. +||++-.. ..+...+..... .. .++.... ..+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~~--~~~~~~~~~~~~~ 74 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------KN--LSFEQVMATKNTV 74 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------cC--CCHHHHHHHHHHH
Confidence 68999999999999999999999999999999864 58765332 111111100000 00 0111000 011
Q ss_pred --HHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCC
Q 014522 96 --QFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADF 173 (423)
Q Consensus 96 --~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~ 173 (423)
.+.....+...+.+++++.++ +..+ +. .. |.+.... +...+.||+||+||| +.|+.|.+||+.+.
T Consensus 75 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~--~~--v~v~~~~----~~~~~~~d~vViATG--s~~~~p~i~G~~~~ 141 (438)
T PRK07251 75 TSRLRGKNYAMLAGSGVDLYDAE-AHFV--SN--KV--IEVQAGD----EKIELTAETIVINTG--AVSNVLPIPGLADS 141 (438)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CE--EEEeeCC----CcEEEEcCEEEEeCC--CCCCCCCCCCcCCC
Confidence 111222234445566655443 2211 11 34 4333211 225799999999999 78888889987543
Q ss_pred CceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHH
Q 014522 174 GGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253 (423)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (423)
.. ++.+... ......+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|.... ++.
T Consensus 142 ~~-v~~~~~~-~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~------------ 201 (438)
T PRK07251 142 KH-VYDSTGI-QSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEP-----SVA------------ 201 (438)
T ss_pred Cc-EEchHHH-hcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCH-----HHH------------
Confidence 22 2222222 2223457899999999999999999999999999999988 44444321 111
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--eE-EEccCcEe
Q 014522 254 DKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG--QA-ELINGEKL 328 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~v-~~~~g~~~ 328 (423)
....+.+++.+|+++.+ +.++..+ .+ ...+++++
T Consensus 202 -----------------------------------------~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i 240 (438)
T PRK07251 202 -----------------------------------------ALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETY 240 (438)
T ss_pred -----------------------------------------HHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEE
Confidence 11233455678888876 6676643 33 33467789
Q ss_pred cccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHHHHHHHHhhh
Q 014522 329 DIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAMRIAQDIGKV 400 (423)
Q Consensus 329 ~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~~~a~~i~~~ 400 (423)
++|.||+|+|++|+...+ ++..++ .+++|.+.+| ++++|+.|+|||+|||+++.. .|..+|+.++.++.+.
T Consensus 241 ~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 241 RFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred EcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 999999999999997433 444555 4567889888 578899999999999997643 6778888888888754
No 31
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=8.2e-32 Score=261.79 Aligned_cols=293 Identities=17% Similarity=0.200 Sum_probs=203.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.+++|||||||+||+.+|..|.+.+.+|+|||+++..- |..+. +....+......+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~l---------------~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPLL---------------PQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhhH---------------HHhcccCCChHHhHH
Confidence 46789999999999999999987788999999876421 11100 001111122334444
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCC-CCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAG-STKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
.+...+...+++ +...+|++++.+. +.+.+...+... ...+...+.||+||+||| +.+..|.+||..+.. +
T Consensus 67 ~~~~~~~~~~~~-~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG--s~~~~~~ipG~~e~~---~ 138 (424)
T PTZ00318 67 PVRPALAKLPNR-YLRAVVYDVDFEE--KRVKCGVVSKSNNANVNTFSVPYDKLVVAHG--ARPNTFNIPGVEERA---F 138 (424)
T ss_pred HHHHHhccCCeE-EEEEEEEEEEcCC--CEEEEecccccccccCCceEecCCEEEECCC--cccCCCCCCCHHHcC---C
Confidence 455556556665 4567899998876 664342211000 000226899999999999 788888888875421 1
Q ss_pred ecCCCC---------------------C-CCCCCCCEEEEECCCCCHHHHHHHHhc--------------cCCccEEEEe
Q 014522 179 HACDYK---------------------S-GEKYKGKKVLVVGCGNSGMELSLDLSN--------------HNASPSMVVR 222 (423)
Q Consensus 179 ~~~~~~---------------------~-~~~~~~~~v~ViG~G~~~~e~a~~l~~--------------~g~~V~~v~r 222 (423)
...... . ......++++|||+|.+|+|+|..|++ .+.+|+++++
T Consensus 139 ~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~ 218 (424)
T PTZ00318 139 FLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEA 218 (424)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcC
Confidence 111100 0 001123589999999999999999986 3678999999
Q ss_pred cCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhh
Q 014522 223 SSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIR 302 (423)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (423)
.+ .++|.... .......+.++
T Consensus 219 ~~-~ll~~~~~----------------------------------------------------------~~~~~~~~~L~ 239 (424)
T PTZ00318 219 GS-EVLGSFDQ----------------------------------------------------------ALRKYGQRRLR 239 (424)
T ss_pred CC-cccccCCH----------------------------------------------------------HHHHHHHHHHH
Confidence 87 44443221 11122345566
Q ss_pred cCCeEEecC--ceEEeCCeEEEccCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCC-CCCCceEEEee
Q 014522 303 SGHINVVPG--IKRISCGQAELINGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGW-KGNAGLYAVGF 378 (423)
Q Consensus 303 ~~~i~~~~~--i~~~~~~~v~~~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~-~~~~~vya~Gd 378 (423)
+.+|+++.+ +.++..+.+++++|+++++|.+|+++|.+|+ .+++.+++ .+++|++.+|. +++ ++.|+|||+||
T Consensus 240 ~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~--~~~~~~~l~~~~~G~I~Vd~-~l~~~~~~~IfAiGD 316 (424)
T PTZ00318 240 RLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG--PLTKQLKVDKTSRGRISVDD-HLRVKPIPNVFALGD 316 (424)
T ss_pred HCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc--chhhhcCCcccCCCcEEeCC-CcccCCCCCEEEEec
Confidence 789999976 8899988999999999999999999999998 57777777 46689999994 455 79999999999
Q ss_pred cccc-----C---CCcchhHHHHHHHHhhhhHHH
Q 014522 379 TRRG-----L---SGASSDAMRIAQDIGKVWKEE 404 (423)
Q Consensus 379 ~~~~-----~---~~a~~~g~~~a~~i~~~l~~~ 404 (423)
|+.. + ..|++||..+|+||.+.+...
T Consensus 317 ~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 317 CAANEERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 9862 1 158899999999999998654
No 32
>PLN02546 glutathione reductase
Probab=100.00 E-value=3.2e-32 Score=269.78 Aligned_cols=299 Identities=15% Similarity=0.132 Sum_probs=198.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEec---------CCCCCcccccccCCceee-cCCCc---------cccCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLER---------AECIASLWQKRTYDRLNL-HLPKQ---------FCQLP 80 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~---------~~~~gg~~~~~~~~~~~~-~~~~~---------~~~~~ 80 (423)
.+|||+|||||++|+.+|..++++|.+|+|||+ ...+||++-+..+-..+. ..... .+.+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 468999999999999999999999999999996 245788765532211111 00000 01110
Q ss_pred CC-CCCCCCCCCC-----CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEE
Q 014522 81 KL-QFPEDFPEYP-----TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVV 154 (423)
Q Consensus 81 ~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vvi 154 (423)
.. ...-+|.... .-..+..++...+++.+++++.+ +++.++. .. |.++ + ..+.||+||+
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~----~~--V~v~-------G-~~~~~D~LVI 222 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP----HT--VDVD-------G-KLYTARNILI 222 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC----CE--EEEC-------C-EEEECCEEEE
Confidence 00 0000111111 11233445566666677776544 2333332 22 5543 3 5799999999
Q ss_pred ccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccC
Q 014522 155 ATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILG 234 (423)
Q Consensus 155 AtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~ 234 (423)
||| +.|..|.+||.+.. + .++........+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++..+.
T Consensus 223 ATG--s~p~~P~IpG~~~v----~-~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d~- 293 (558)
T PLN02546 223 AVG--GRPFIPDIPGIEHA----I-DSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFDE- 293 (558)
T ss_pred eCC--CCCCCCCCCChhhc----c-CHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccCH-
Confidence 999 89988989886531 1 222111222357899999999999999999999999999999987 44443321
Q ss_pred CChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--c
Q 014522 235 KSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--I 312 (423)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i 312 (423)
.....+.+.+++.+|+++.+ +
T Consensus 294 ---------------------------------------------------------~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 294 ---------------------------------------------------------EVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHCCcEEEeCCEE
Confidence 11111234455678898876 5
Q ss_pred eEEeC---CeEE--EccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC-
Q 014522 313 KRISC---GQAE--LINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS- 384 (423)
Q Consensus 313 ~~~~~---~~v~--~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~- 384 (423)
.++.. +.+. +.+++...+|.||+|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||+....
T Consensus 317 ~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l 395 (558)
T PLN02546 317 QAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINL 395 (558)
T ss_pred EEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCccc
Confidence 66642 2232 3344445589999999999998444 677787 5568999998 578899999999999997544
Q ss_pred --CcchhHHHHHHHHhhh
Q 014522 385 --GASSDAMRIAQDIGKV 400 (423)
Q Consensus 385 --~a~~~g~~~a~~i~~~ 400 (423)
.|..||+.+|.+|.+.
T Consensus 396 ~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 396 TPVALMEGGALAKTLFGN 413 (558)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 6889999999999864
No 33
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.5e-31 Score=263.59 Aligned_cols=299 Identities=20% Similarity=0.262 Sum_probs=192.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccccc-CCceeecC-CC---ccccCCCCCCCCCCCCCCCH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRT-YDRLNLHL-PK---QFCQLPKLQFPEDFPEYPTK 94 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~-~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 94 (423)
++|||+|||||++|+++|..|++.|.+|+|||+ +..||+|.... .+...+.. .. .......+..... ....+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~ 79 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDF 79 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCH
Confidence 468999999999999999999999999999999 67899875421 11110000 00 0000011110000 122355
Q ss_pred HHHHHHHHHHHHHc------------CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 95 RQFIQYLESYAEKF------------EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 95 ~~~~~~~~~~~~~~------------~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
..+.++.++...++ ++++..+ .+..+ + ... +.+. + .++.||+||+||| +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~---~-~~~--v~v~-------~-~~~~~d~lIiATG--s~- 141 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFV---D-PNT--VEVN-------G-ERIEAKNIVIATG--SR- 141 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEc---c-CCE--EEEC-------c-EEEEeCEEEEeCC--CC-
Confidence 56666555544433 2222211 11111 1 122 4442 3 5899999999999 44
Q ss_pred cCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 163 VMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 163 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
.|.+||.....+..+..++........+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+. ++
T Consensus 142 -~p~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~-- 212 (460)
T PRK06292 142 -VPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDP-----EV-- 212 (460)
T ss_pred -CCCCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhH-----HH--
Confidence 4456665432222223333222233467899999999999999999999999999999988 44443221 11
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG-- 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-- 318 (423)
...+.+.+++. |+++.+ +.+++.+
T Consensus 213 ---------------------------------------------------~~~~~~~l~~~-I~i~~~~~v~~i~~~~~ 240 (460)
T PRK06292 213 ---------------------------------------------------SKQAQKILSKE-FKIKLGAKVTSVEKSGD 240 (460)
T ss_pred ---------------------------------------------------HHHHHHHHhhc-cEEEcCCEEEEEEEcCC
Confidence 11123344555 787766 6666532
Q ss_pred -eEEE--ccC--cEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccch
Q 014522 319 -QAEL--ING--EKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASS 388 (423)
Q Consensus 319 -~v~~--~~g--~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~ 388 (423)
.+++ .++ +++++|.||+|+|++|+...+ ++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|..
T Consensus 241 ~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~ 319 (460)
T PRK06292 241 EKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAAD 319 (460)
T ss_pred ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHH
Confidence 3443 233 479999999999999998543 566777 5668999888 578899999999999997543 7999
Q ss_pred hHHHHHHHHhhh
Q 014522 389 DAMRIAQDIGKV 400 (423)
Q Consensus 389 ~g~~~a~~i~~~ 400 (423)
||+.+|.+|.+.
T Consensus 320 qg~~aa~~i~~~ 331 (460)
T PRK06292 320 EGRIAAENAAGD 331 (460)
T ss_pred HHHHHHHHhcCC
Confidence 999999999864
No 34
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-31 Score=261.03 Aligned_cols=306 Identities=16% Similarity=0.196 Sum_probs=190.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecC-CCccc-c----CCCCCCCCCCCCCCCH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHL-PKQFC-Q----LPKLQFPEDFPEYPTK 94 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~-~~~~~-~----~~~~~~~~~~~~~~~~ 94 (423)
.+||+||||||+|++||..|+++|.+|+|||+. .+||++....+-..+... ..... . ...+..... .....
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~--~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGE--VTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcC--cccCH
Confidence 589999999999999999999999999999985 667765543221111000 00000 0 000000000 00122
Q ss_pred HHHHHHHHHHHHHc--CCceec-cceEEEEEEe---CCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCC
Q 014522 95 RQFIQYLESYAEKF--EINPRF-NECVQSARYD---ETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIE 168 (423)
Q Consensus 95 ~~~~~~~~~~~~~~--~~~~~~-~~~v~~v~~~---~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~ 168 (423)
..+....++..++. ++.... ...|+.++.. .+...+.+...+ ++..+++||+||+||| +.|..| |
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~-----g~~~~~~~d~lViATG--s~p~~~--p 151 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLND-----GGTETVTFDNAIIATG--SSTRLL--P 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecC-----CCeeEEEcCEEEEeCC--CCCCCC--C
Confidence 22222222111111 111111 1123333211 112454444433 1235799999999999 677653 5
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhc
Q 014522 169 GLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWL 248 (423)
Q Consensus 169 g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (423)
|.+. ...++...+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+. ++.
T Consensus 152 g~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~-----~~~------- 216 (466)
T PRK07818 152 GTSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDA-----EVS------- 216 (466)
T ss_pred CCCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCH-----HHH-------
Confidence 5432 122233222111 22357899999999999999999999999999999988 55554332 111
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe----EEE
Q 014522 249 PLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ----AEL 322 (423)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----v~~ 322 (423)
..+.+.+++.+|+++.+ +.+++.++ +.+
T Consensus 217 ----------------------------------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~ 250 (466)
T PRK07818 217 ----------------------------------------------KEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTV 250 (466)
T ss_pred ----------------------------------------------HHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEE
Confidence 12334455678998877 77776432 334
Q ss_pred c--cC--cEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHHHH
Q 014522 323 I--NG--EKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAMRI 393 (423)
Q Consensus 323 ~--~g--~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~~~ 393 (423)
. +| +++++|.||+|+|++|++..+ ++..++ .+++|.+.+| .+++|+.|+|||+|||+.... .|..||+.+
T Consensus 251 ~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~a 329 (466)
T PRK07818 251 SKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVA 329 (466)
T ss_pred EecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHH
Confidence 3 56 379999999999999998544 667777 5678889888 578899999999999987543 799999999
Q ss_pred HHHHhhh
Q 014522 394 AQDIGKV 400 (423)
Q Consensus 394 a~~i~~~ 400 (423)
|.+|.+.
T Consensus 330 a~~i~g~ 336 (466)
T PRK07818 330 AETIAGA 336 (466)
T ss_pred HHHHcCC
Confidence 9999864
No 35
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.98 E-value=1e-31 Score=263.89 Aligned_cols=286 Identities=16% Similarity=0.235 Sum_probs=196.7
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 23 GPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
+|+|||||++|+++|..|++++ .+|+|||+++..+ |.. +.++... ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~--------------~~~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA--------------CGLPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec--------------CCCceEe----ccccCCHHHhhcC
Confidence 7999999999999999999985 5999999987542 100 0011000 0011223344444
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEE--eCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYI--CRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~--~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
..+.+.+.+++++.+++|++++.+. ..+.+.... + + ..+. ||+||+||| +.|..|.+||++.. .++
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~v~~~~~~--~---~-~~~~~~yd~lviAtG--~~~~~~~i~g~~~~--~v~ 129 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KTITVKNLK--T---G-SIFNDTYDKLMIATG--ARPIIPPIKNINLE--NVY 129 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CEEEEEECC--C---C-CEEEecCCEEEECCC--CCCCCCCCCCcCCC--CEE
Confidence 4555667799988899999998765 554443211 1 2 3455 999999999 78888888886532 122
Q ss_pred ecCCCCCC-------CCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHH
Q 014522 179 HACDYKSG-------EKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW 251 (423)
Q Consensus 179 ~~~~~~~~-------~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (423)
+.....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .+++...
T Consensus 130 ~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~------------------- 189 (444)
T PRK09564 130 TLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSF------------------- 189 (444)
T ss_pred EECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhc-------------------
Confidence 22221110 11346899999999999999999999999999999887 3333110
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe---EEEccCc
Q 014522 252 LVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ---AELINGE 326 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~---v~~~~g~ 326 (423)
.+.....+.+.+++.+|+++.+ +.++..++ ....++.
T Consensus 190 --------------------------------------~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~ 231 (444)
T PRK09564 190 --------------------------------------DKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG 231 (444)
T ss_pred --------------------------------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC
Confidence 0111111234455667888766 67775442 2234556
Q ss_pred EecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc-------------CCCcchhHHH
Q 014522 327 KLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG-------------LSGASSDAMR 392 (423)
Q Consensus 327 ~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------------~~~a~~~g~~ 392 (423)
++++|.+|+|+|+.|+. .+++..++ .+++|++.+| ++++|+.|+|||+|||+.. ...|.+||++
T Consensus 232 ~i~~d~vi~a~G~~p~~-~~l~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~ 309 (444)
T PRK09564 232 EYEADVVIVATGVKPNT-EFLEDTGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRM 309 (444)
T ss_pred EEEcCEEEECcCCCcCH-HHHHhcCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHH
Confidence 89999999999999997 67888887 4668999888 5678999999999999852 1268899999
Q ss_pred HHHHHhhh
Q 014522 393 IAQDIGKV 400 (423)
Q Consensus 393 ~a~~i~~~ 400 (423)
+|+||.+.
T Consensus 310 ~a~ni~g~ 317 (444)
T PRK09564 310 VGENLAGR 317 (444)
T ss_pred HHHHhcCC
Confidence 99999863
No 36
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=2.9e-31 Score=261.87 Aligned_cols=309 Identities=20% Similarity=0.223 Sum_probs=198.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceee-cCCCc---------cccCCCCCCCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNL-HLPKQ---------FCQLPKLQFPEDFP 89 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~ 89 (423)
..|||+||||||+|+++|..|+++|.+|+|||+. .+||+|....+-..+. ..... .+.+.....+-+|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4689999999999999999999999999999986 7899886532211111 00000 00111000000111
Q ss_pred CCC-CHHHHHHH----HHHHHHHcCCceeccceEEEEEEe---CCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 90 EYP-TKRQFIQY----LESYAEKFEINPRFNECVQSARYD---ETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 90 ~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~v~~v~~~---~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
... ..+.+.+. ....+++.+++++.+ .++.++.. +..+.+.|.+.+ ++...+.||+||+||| +.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~-----g~~~~~~~d~lViATG--s~ 153 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETET-----GENEMIIPENLLIATG--SR 153 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCC-----CceEEEEcCEEEEeCC--CC
Confidence 111 11222222 234455667776655 35555433 112366666654 1236899999999999 66
Q ss_pred CcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHH
Q 014522 162 RVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELA 241 (423)
Q Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~ 241 (423)
|..+ |+.......+++..+.. .....+++++|||+|++|+|+|..|++.|.+|+++.|.+ .++|..+. ++.
T Consensus 154 p~~~--p~~~~~~~~~~~~~~~~-~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~-----~~~ 224 (472)
T PRK05976 154 PVEL--PGLPFDGEYVISSDEAL-SLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDA-----ELS 224 (472)
T ss_pred CCCC--CCCCCCCceEEcchHhh-CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCH-----HHH
Confidence 6543 33321111223332222 223346899999999999999999999999999999988 45554321 111
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe---
Q 014522 242 TLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--- 316 (423)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--- 316 (423)
..+.+.+++.+|+++.+ +.++.
T Consensus 225 -----------------------------------------------------~~l~~~l~~~gI~i~~~~~v~~i~~~~ 251 (472)
T PRK05976 225 -----------------------------------------------------KEVARLLKKLGVRVVTGAKVLGLTLKK 251 (472)
T ss_pred -----------------------------------------------------HHHHHHHHhcCCEEEeCcEEEEEEEec
Confidence 11234455678888877 66765
Q ss_pred CCeE---EEccCc--EecccEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccc
Q 014522 317 CGQA---ELINGE--KLDIDAIVLATGYRSNVPSW-LQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GAS 387 (423)
Q Consensus 317 ~~~v---~~~~g~--~~~~D~vi~a~G~~~~~~~l-l~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~ 387 (423)
.+++ .+.+|+ ++++|.||+|+|++|+...+ ++..++..++|.+.++ ++++|+.|+|||+|||+.... .|.
T Consensus 252 ~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~ 330 (472)
T PRK05976 252 DGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAM 330 (472)
T ss_pred CCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHH
Confidence 3433 234663 69999999999999998444 4455664457888888 578899999999999986543 789
Q ss_pred hhHHHHHHHHhhh
Q 014522 388 SDAMRIAQDIGKV 400 (423)
Q Consensus 388 ~~g~~~a~~i~~~ 400 (423)
.+|+.+|.+|.+.
T Consensus 331 ~~g~~aa~~i~g~ 343 (472)
T PRK05976 331 AEGEMAAEHIAGK 343 (472)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999753
No 37
>PRK13748 putative mercuric reductase; Provisional
Probab=99.98 E-value=5.8e-31 Score=265.72 Aligned_cols=302 Identities=16% Similarity=0.169 Sum_probs=196.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccccc-CCceeecCCCcc-c---cCCC-CCCCCCCCCCCCH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRT-YDRLNLHLPKQF-C---QLPK-LQFPEDFPEYPTK 94 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~ 94 (423)
.|||+||||||+|+++|..|+++|.+|+|||+. .+||+|.+.. .|...+..+... . ..+. ...+...+. ...
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT-IDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCc-cCH
Confidence 589999999999999999999999999999997 7899886532 222111000000 0 0000 011001111 123
Q ss_pred HHHHHHHHH------------HHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 95 RQFIQYLES------------YAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 95 ~~~~~~~~~------------~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
..+.++... ...++ +++++.+ ++..++ . ..+.|.+.+ ++...++||+||+||| +.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~--~~~~v~~~~-----g~~~~~~~d~lviAtG--s~ 243 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD--D--QTLIVRLND-----GGERVVAFDRCLIATG--AS 243 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec--C--CEEEEEeCC-----CceEEEEcCEEEEcCC--CC
Confidence 333332221 12222 4444333 333322 2 555566544 1235799999999999 88
Q ss_pred CcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHH
Q 014522 162 RVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELA 241 (423)
Q Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~ 241 (423)
|..|.+||..... .+...+... ....+++++|||+|.+|+|+|..|++.|.+|+++.|++ +++..+. +
T Consensus 244 p~~p~i~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~-----~-- 311 (561)
T PRK13748 244 PAVPPIPGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDP-----A-- 311 (561)
T ss_pred CCCCCCCCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCH-----H--
Confidence 8889899876421 222222211 22346899999999999999999999999999999854 3333221 1
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC-
Q 014522 242 TLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG- 318 (423)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~- 318 (423)
....+.+.+++.+|+++.+ +.++..+
T Consensus 312 ---------------------------------------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~ 340 (561)
T PRK13748 312 ---------------------------------------------------IGEAVTAAFRAEGIEVLEHTQASQVAHVD 340 (561)
T ss_pred ---------------------------------------------------HHHHHHHHHHHCCCEEEcCCEEEEEEecC
Confidence 1112344456678888876 6666532
Q ss_pred -eEEE-ccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHH
Q 014522 319 -QAEL-INGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAM 391 (423)
Q Consensus 319 -~v~~-~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~ 391 (423)
.+.+ .++.++++|.||+|+|++||+..+ +++.++ .+++|++.+| ++++|+.|+|||+|||+.... .|..+|+
T Consensus 341 ~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~ 419 (561)
T PRK13748 341 GEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGT 419 (561)
T ss_pred CEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHH
Confidence 2322 233479999999999999998443 567777 5678999998 588899999999999986533 7899999
Q ss_pred HHHHHHhhh
Q 014522 392 RIAQDIGKV 400 (423)
Q Consensus 392 ~~a~~i~~~ 400 (423)
.+|.+|.+.
T Consensus 420 ~aa~~i~g~ 428 (561)
T PRK13748 420 RAAINMTGG 428 (561)
T ss_pred HHHHHHcCC
Confidence 999999753
No 38
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=4.2e-31 Score=259.75 Aligned_cols=302 Identities=20% Similarity=0.218 Sum_probs=190.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCCccc-cCC-----CCCCCCCCCCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPKQFC-QLP-----KLQFPEDFPEYPT 93 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~ 93 (423)
+|||+||||||+|++||..++++|.+|+|||+.+.+||++.+. +.|...+......+ .+. .+..... .. ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~-~~-~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK-PT-LN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc-Cc-cC
Confidence 5899999999999999999999999999999877889876442 22211110000000 000 0000000 00 01
Q ss_pred HHHHH-----------HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 94 KRQFI-----------QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 94 ~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
-..+. .......++.+++++.+. . .... ...+.|.+.+ ++...++||+|||||| +.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a---~~~~-~~~v~v~~~~-----g~~~~~~~d~lVIATG--s~p 148 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G---RLDG-VGKVVVKAED-----GSETQLEAKDIVIATG--SEP 148 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E---EEcc-CCEEEEEcCC-----CceEEEEeCEEEEeCC--CCC
Confidence 11111 122333344456544433 1 2222 2444454443 1225799999999999 666
Q ss_pred cCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 163 VMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 163 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
. .+||+......++.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+. +
T Consensus 149 ~--~ipg~~~~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~-----~--- 216 (466)
T PRK06115 149 T--PLPGVTIDNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT-----E--- 216 (466)
T ss_pred C--CCCCCCCCCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH-----H---
Confidence 3 35665322222333322222 23357899999999999999999999999999999988 45553321 1
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--C
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--G 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~ 318 (423)
....+.+.+++.+|+++.+ +.+++. +
T Consensus 217 --------------------------------------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~ 246 (466)
T PRK06115 217 --------------------------------------------------TAKTLQKALTKQGMKFKLGSKVTGATAGAD 246 (466)
T ss_pred --------------------------------------------------HHHHHHHHHHhcCCEEEECcEEEEEEEcCC
Confidence 1112334455678888876 667764 2
Q ss_pred eE--EEc---c--CcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Cc
Q 014522 319 QA--ELI---N--GEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GA 386 (423)
Q Consensus 319 ~v--~~~---~--g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a 386 (423)
++ .+. + ++++++|.||+|+|++|++..+ ++..++ .+++|.+ +| .+++|+.|+|||+|||+..+. .|
T Consensus 247 ~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~-vd-~~~~Ts~~~IyA~GD~~~~~~la~~A 324 (466)
T PRK06115 247 GVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-AN-DHHRTSVPGVWVIGDVTSGPMLAHKA 324 (466)
T ss_pred eEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEE-EC-CCeecCCCCEEEeeecCCCcccHHHH
Confidence 33 222 2 3579999999999999998444 556666 4556755 45 478899999999999997544 78
Q ss_pred chhHHHHHHHHhhh
Q 014522 387 SSDAMRIAQDIGKV 400 (423)
Q Consensus 387 ~~~g~~~a~~i~~~ 400 (423)
.+||+.+|+||.+.
T Consensus 325 ~~~g~~aa~~i~~~ 338 (466)
T PRK06115 325 EDEAVACIERIAGK 338 (466)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999864
No 39
>PRK12831 putative oxidoreductase; Provisional
Probab=99.98 E-value=1.3e-31 Score=262.11 Aligned_cols=278 Identities=20% Similarity=0.215 Sum_probs=190.8
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
...+||+||||||+|+++|..|+++|++|+|+|+.+.+||.+.. .++.+.. ..+.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~l--------~~~~~~ 194 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY---------------GIPEFRL--------PKETVV 194 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee---------------cCCCccC--------CccHHH
Confidence 35789999999999999999999999999999998888887632 1221111 123355
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
++..+.+++++++++.++.|. .. ++..+ ....+.||.||+|||+ ..|..+.+||.+.. + ++
T Consensus 195 ~~~~~~~~~~gv~i~~~~~v~--------~~--v~~~~------~~~~~~~d~viiAtGa-~~~~~l~ipG~~~~-g-V~ 255 (464)
T PRK12831 195 KKEIENIKKLGVKIETNVVVG--------KT--VTIDE------LLEEEGFDAVFIGSGA-GLPKFMGIPGENLN-G-VF 255 (464)
T ss_pred HHHHHHHHHcCCEEEcCCEEC--------Cc--CCHHH------HHhccCCCEEEEeCCC-CCCCCCCCCCcCCc-C-cE
Confidence 556667777899988888652 11 22222 1134679999999995 25777788886532 1 11
Q ss_pred ecCCC-------------CCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHH
Q 014522 179 HACDY-------------KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMM 245 (423)
Q Consensus 179 ~~~~~-------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
...++ .......+++|+|||+|++|+|+|..+.+.|.+|++++|+....+|....
T Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~------------ 323 (464)
T PRK12831 256 SANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE------------ 323 (464)
T ss_pred EHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH------------
Confidence 11111 11123467999999999999999999999999999999976322121110
Q ss_pred hhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce--
Q 014522 246 KWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ-- 319 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~-- 319 (423)
..+.+.+.+|+++.. +.++.. ++
T Consensus 324 ---------------------------------------------------e~~~a~~eGV~i~~~~~~~~i~~~~~g~v 352 (464)
T PRK12831 324 ---------------------------------------------------EVHHAKEEGVIFDLLTNPVEILGDENGWV 352 (464)
T ss_pred ---------------------------------------------------HHHHHHHcCCEEEecccceEEEecCCCeE
Confidence 011122345555433 333321 11
Q ss_pred --EEEc------------------cCc--EecccEEEEcCCCCCCCCCcccc-ccc-ccCCCCCCCCCCCCCCCCCceEE
Q 014522 320 --AELI------------------NGE--KLDIDAIVLATGYRSNVPSWLQE-SEF-FSENGFPKAPFPHGWKGNAGLYA 375 (423)
Q Consensus 320 --v~~~------------------~g~--~~~~D~vi~a~G~~~~~~~ll~~-~~~-~~~~g~~~~~~~~~~~~~~~vya 375 (423)
+.+. +|+ ++++|.||+|+|+.|+. .++.. .++ .+++|.+.++..+++|+.|+|||
T Consensus 353 ~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfA 431 (464)
T PRK12831 353 KGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLKINKRGCIVADEETGLTSKEGVFA 431 (464)
T ss_pred EEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh-hhhcccCCceECCCCcEEECCCCCccCCCCEEE
Confidence 1111 232 69999999999999997 56655 566 56678998885448999999999
Q ss_pred EeeccccCC---CcchhHHHHHHHHhhhhH
Q 014522 376 VGFTRRGLS---GASSDAMRIAQDIGKVWK 402 (423)
Q Consensus 376 ~Gd~~~~~~---~a~~~g~~~a~~i~~~l~ 402 (423)
+||+..+.. .|+.+|+.+|.+|..+|.
T Consensus 432 aGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 432 GGDAVTGAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred eCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999987654 799999999999998875
No 40
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.98 E-value=1.6e-30 Score=255.62 Aligned_cols=308 Identities=15% Similarity=0.132 Sum_probs=201.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeec--CCC------c--cccCCCC---CCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLH--LPK------Q--FCQLPKL---QFPED 87 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~------~--~~~~~~~---~~~~~ 87 (423)
|+||+|||||++|+.+|..++++|.+|+++|+.. .||++.+..+...+.. ... . .+.+... ...-+
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 4689999999999999999999999999999874 7886654322211110 000 0 0011000 00001
Q ss_pred CCCCC-CH----HHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 88 FPEYP-TK----RQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 88 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
+.... .. ..+.+.+.+.+++++++++.+. +..++...+...+.|.+.+ ++...+.||+||+||| +.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~-----g~~~~~~~d~lViATG--s~p 151 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTAD-----GGEETLDADVVLIATG--ASP 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCC-----CceEEEecCEEEEcCC--CCC
Confidence 10000 01 1112344455666788865554 4443311122555565543 1224799999999999 777
Q ss_pred cCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 163 VMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 163 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
..|+.++... ..+++..+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+. +.
T Consensus 152 ~~~p~~~~~~--~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~-- 220 (466)
T PRK07845 152 RILPTAEPDG--ERILTWRQLYD-LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDA-----DA-- 220 (466)
T ss_pred CCCCCCCCCC--ceEEeehhhhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCH-----HH--
Confidence 6554433221 12333333322 23346899999999999999999999999999999988 45554432 11
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CC
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CG 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~ 318 (423)
...+.+.+++.+|+++.+ +.++. .+
T Consensus 221 ---------------------------------------------------~~~l~~~L~~~gV~i~~~~~v~~v~~~~~ 249 (466)
T PRK07845 221 ---------------------------------------------------AEVLEEVFARRGMTVLKRSRAESVERTGD 249 (466)
T ss_pred ---------------------------------------------------HHHHHHHHHHCCcEEEcCCEEEEEEEeCC
Confidence 112344456678998876 66664 23
Q ss_pred e--EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHH
Q 014522 319 Q--AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAM 391 (423)
Q Consensus 319 ~--v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~ 391 (423)
+ +.+.+|+++++|.||+|+|++|++..+ +++.++ .++.|++.+| .+++|+.|+|||+||++.... .|..||+
T Consensus 250 ~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~ 328 (466)
T PRK07845 250 GVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGR 328 (466)
T ss_pred EEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHH
Confidence 3 455688899999999999999998443 677777 5678999988 578899999999999997543 7899999
Q ss_pred HHHHHHhhh
Q 014522 392 RIAQDIGKV 400 (423)
Q Consensus 392 ~~a~~i~~~ 400 (423)
.+|.+|.+.
T Consensus 329 ~aa~~i~g~ 337 (466)
T PRK07845 329 IAMYHALGE 337 (466)
T ss_pred HHHHHHcCC
Confidence 999999864
No 41
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.98 E-value=1.1e-31 Score=259.16 Aligned_cols=284 Identities=18% Similarity=0.233 Sum_probs=190.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV--PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
..+|+|||||+||++||..|++.|. +|+|+++.+..+ |....+ +..+..-.. .. ......
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~l--~~~~~~~~~---~~--~~~~~~---- 64 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPPL--SKSMLLEDS---PQ--LQQVLP---- 64 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCCC--CHHHHCCCC---cc--ccccCC----
Confidence 3589999999999999999999975 899999886442 111100 000000000 00 000000
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
.+...+.+++++.++.|..++... .. |.+.+ + ..+.||+||+||| +.|..+++++... ..++
T Consensus 65 ---~~~~~~~~i~~~~g~~V~~id~~~--~~--v~~~~------g-~~~~yd~LViATG--s~~~~~p~~~~~~--~~v~ 126 (396)
T PRK09754 65 ---ANWWQENNVHLHSGVTIKTLGRDT--RE--LVLTN------G-ESWHWDQLFIATG--AAARPLPLLDALG--ERCF 126 (396)
T ss_pred ---HHHHHHCCCEEEcCCEEEEEECCC--CE--EEECC------C-CEEEcCEEEEccC--CCCCCCCCCCcCC--CCEE
Confidence 122344689989999999998754 43 66654 4 5799999999999 6776555544321 1122
Q ss_pred ec--CCC---CCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHH
Q 014522 179 HA--CDY---KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253 (423)
Q Consensus 179 ~~--~~~---~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (423)
.. .+. .......+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++... +
T Consensus 127 ~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~----------------~---- 185 (396)
T PRK09754 127 TLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNA----------------P---- 185 (396)
T ss_pred ecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhc----------------C----
Confidence 21 111 11112346899999999999999999999999999999988 3333211 0
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe---EEEccCcEe
Q 014522 254 DKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ---AELINGEKL 328 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~---v~~~~g~~~ 328 (423)
+.....+.+.+++.+|+++.+ +.++..++ +.+.+|+++
T Consensus 186 -------------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i 228 (396)
T PRK09754 186 -------------------------------------PPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETL 228 (396)
T ss_pred -------------------------------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEE
Confidence 011111234455678888876 67776432 567889999
Q ss_pred cccEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC------------CCcchhHHHHHHH
Q 014522 329 DIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRGL------------SGASSDAMRIAQD 396 (423)
Q Consensus 329 ~~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~------------~~a~~~g~~~a~~ 396 (423)
++|.||+++|..|++ .|++..++..+.| +.+| ++++|+.|+|||+|||+... ..|..||+++|.|
T Consensus 229 ~aD~Vv~a~G~~pn~-~l~~~~gl~~~~g-i~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~n 305 (396)
T PRK09754 229 QADVVIYGIGISAND-QLAREANLDTANG-IVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAA 305 (396)
T ss_pred ECCEEEECCCCChhh-HHHHhcCCCcCCC-EEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHH
Confidence 999999999999997 6777777744444 6777 57889999999999998421 2588999999999
Q ss_pred Hhhhh
Q 014522 397 IGKVW 401 (423)
Q Consensus 397 i~~~l 401 (423)
|.+..
T Consensus 306 i~g~~ 310 (396)
T PRK09754 306 MLGLP 310 (396)
T ss_pred hcCCC
Confidence 98653
No 42
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=4.7e-31 Score=260.24 Aligned_cols=308 Identities=19% Similarity=0.240 Sum_probs=197.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEec------CCCCCcccccccC-Ccee-ecCCCcc---------ccCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLER------AECIASLWQKRTY-DRLN-LHLPKQF---------CQLPKL 82 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~------~~~~gg~~~~~~~-~~~~-~~~~~~~---------~~~~~~ 82 (423)
..||++|||||++|+++|..+++.|.+|+|||+ ...+||+|.+..+ +... +.....+ +.+...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 368999999999999999999999999999998 3577888765432 2111 1000000 011100
Q ss_pred CCCCCCCCCCCH-HHHH----HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccC
Q 014522 83 QFPEDFPEYPTK-RQFI----QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATG 157 (423)
Q Consensus 83 ~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG 157 (423)
..+.+++....+ +.+. .....+.+..+++++.+ ++..++... ..+.|.+.... + ..++||+||+|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~--~~~~v~v~~~~----~-~~~~~d~lViATG 154 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTD--AGYEIKVTGED----E-TVITAKHVIIATG 154 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCC--CCCEEEEecCC----C-eEEEeCEEEEeCC
Confidence 001111111111 1111 22334444556765543 344444333 34556664311 2 5899999999999
Q ss_pred CCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCCh
Q 014522 158 ENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKST 237 (423)
Q Consensus 158 ~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~ 237 (423)
+.|..+ |+.. ..+..++.++........+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++..+.
T Consensus 155 --s~p~~~--p~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~---- 224 (475)
T PRK06327 155 --SEPRHL--PGVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADE---- 224 (475)
T ss_pred --CCCCCC--CCCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCH----
Confidence 676543 2222 1122233333222233457899999999999999999999999999999988 44443221
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEE
Q 014522 238 FELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRI 315 (423)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~ 315 (423)
++ ...+.+.+++.+|+++.+ +.++
T Consensus 225 -~~-----------------------------------------------------~~~~~~~l~~~gi~i~~~~~v~~i 250 (475)
T PRK06327 225 -QV-----------------------------------------------------AKEAAKAFTKQGLDIHLGVKIGEI 250 (475)
T ss_pred -HH-----------------------------------------------------HHHHHHHHHHcCcEEEeCcEEEEE
Confidence 11 111233455668888876 6777
Q ss_pred eCC--e--EEEcc--C--cEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC-
Q 014522 316 SCG--Q--AELIN--G--EKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS- 384 (423)
Q Consensus 316 ~~~--~--v~~~~--g--~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~- 384 (423)
..+ + +.+.+ | +++++|.|++|+|++|++..+ ++..++ .+++|++.+| .+++|+.|+|||+|||+..+.
T Consensus 251 ~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~~ 329 (475)
T PRK06327 251 KTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVRGPML 329 (475)
T ss_pred EEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccCCcch
Confidence 643 3 34444 3 479999999999999998443 456677 5678999888 578899999999999987543
Q ss_pred --CcchhHHHHHHHHhhh
Q 014522 385 --GASSDAMRIAQDIGKV 400 (423)
Q Consensus 385 --~a~~~g~~~a~~i~~~ 400 (423)
.|..||+.+|.+|.+.
T Consensus 330 ~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 330 AHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 6899999999999764
No 43
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.98 E-value=3.3e-31 Score=261.78 Aligned_cols=304 Identities=16% Similarity=0.193 Sum_probs=193.7
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--------CCCccccc-ccCCceeecCCCcccc-----CCCCCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE--------CIASLWQK-RTYDRLNLHLPKQFCQ-----LPKLQFPE 86 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~--------~~gg~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~ 86 (423)
+|||+||||||+|++||..|+++|.+|+|||+.. .+||++-+ .+.+...+........ ...+.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 6899999999999999999999999999999631 37887533 2333211100000000 00011000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEE------eCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 87 DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARY------DETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
..-.....+.++.....+++...+....++..++. ..+... |.+.+.. +...++||+||+||| +
T Consensus 85 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~--v~v~~~~----~~~~i~~d~lIIATG--s 154 (499)
T PTZ00052 85 --SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHT--VSYGDNS----QEETITAKYILIATG--G 154 (499)
T ss_pred --CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCE--EEEeeCC----CceEEECCEEEEecC--C
Confidence 01235566666666666555433322222221111 111133 4443211 226799999999999 7
Q ss_pred CCcCC-CCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHH
Q 014522 161 ERVMP-DIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFE 239 (423)
Q Consensus 161 ~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~ 239 (423)
.|..| .+||.... .+.+.+.. .....+++++|||+|.+|+|+|..|++.|.+|+++.++. +++..+.
T Consensus 155 ~p~~p~~i~G~~~~---~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--~l~~~d~------ 222 (499)
T PTZ00052 155 RPSIPEDVPGAKEY---SITSDDIF-SLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI--PLRGFDR------ 222 (499)
T ss_pred CCCCCCCCCCccce---eecHHHHh-hhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc--ccccCCH------
Confidence 88877 47876532 12221221 122346799999999999999999999999999998743 3333321
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC
Q 014522 240 LATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC 317 (423)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~ 317 (423)
.....+.+.+++.+|+++.+ +.++..
T Consensus 223 ----------------------------------------------------~~~~~l~~~l~~~GV~i~~~~~v~~v~~ 250 (499)
T PTZ00052 223 ----------------------------------------------------QCSEKVVEYMKEQGTLFLEGVVPINIEK 250 (499)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHcCCEEEcCCeEEEEEE
Confidence 11122344455678888876 455543
Q ss_pred --C--eEEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc-CC---Ccc
Q 014522 318 --G--QAELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG-LS---GAS 387 (423)
Q Consensus 318 --~--~v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-~~---~a~ 387 (423)
+ .+.+.+|+++++|.||+|+|++||+..+ ++..++ .+++|.++++. . +|+.|+|||+|||+.+ .. .|.
T Consensus 251 ~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~-~-~Ts~p~IyAiGDv~~~~~~l~~~A~ 328 (499)
T PTZ00052 251 MDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPN-D-CTNIPNIFAVGDVVEGRPELTPVAI 328 (499)
T ss_pred cCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCC-C-cCCCCCEEEEEEecCCCcccHHHHH
Confidence 2 2556788899999999999999998443 466777 56678765553 3 8999999999999853 22 689
Q ss_pred hhHHHHHHHHhhh
Q 014522 388 SDAMRIAQDIGKV 400 (423)
Q Consensus 388 ~~g~~~a~~i~~~ 400 (423)
+||+.+|.+|.+.
T Consensus 329 ~~g~~aa~ni~g~ 341 (499)
T PTZ00052 329 KAGILLARRLFKQ 341 (499)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999763
No 44
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=3e-31 Score=259.15 Aligned_cols=272 Identities=20% Similarity=0.231 Sum_probs=189.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+... ++. +....++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPE---------FRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCC---------ccCCHHHHH
Confidence 46799999999999999999999999999999998888765321 111 112234455
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+.+.+++++.++.+. .. +++.+ . ...||+||+|||+ ..|..|.+||.+.. + +++
T Consensus 188 ~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~------~--~~~yd~viiAtGa-~~p~~~~ipG~~~~-g-v~~ 246 (449)
T TIGR01316 188 TEIKTLKKLGVTFRMNFLVG--------KT--ATLEE------L--FSQYDAVFIGTGA-GLPKLMNIPGEELC-G-VYS 246 (449)
T ss_pred HHHHHHHhCCcEEEeCCccC--------Cc--CCHHH------H--HhhCCEEEEeCCC-CCCCcCCCCCCCCC-C-cEE
Confidence 55556677788888777441 11 33332 2 3468999999995 26777788886531 1 111
Q ss_pred cCCC--------------CCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHH
Q 014522 180 ACDY--------------KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMM 245 (423)
Q Consensus 180 ~~~~--------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
..++ .......+++++|||+|.+|+|+|..+.+.|.+|++++|++...++..
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-------------- 312 (449)
T TIGR01316 247 ANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-------------- 312 (449)
T ss_pred HHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC--------------
Confidence 1111 011224578999999999999999999999999999999873111100
Q ss_pred hhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--C---
Q 014522 246 KWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--G--- 318 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~--- 318 (423)
....+.+++.+|+++.+ +.++.. +
T Consensus 313 -------------------------------------------------~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v 343 (449)
T TIGR01316 313 -------------------------------------------------VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNV 343 (449)
T ss_pred -------------------------------------------------HHHHHHHHhCCCEEEeccCcEEEEEcCCCeE
Confidence 00122334556666644 444431 1
Q ss_pred -eEEEc---------cC-----------cEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEE
Q 014522 319 -QAELI---------NG-----------EKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAV 376 (423)
Q Consensus 319 -~v~~~---------~g-----------~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~ 376 (423)
++.+. +| .++++|.||+|+|+.|+. .+++..++ .+.+|.+.+| ..++|+.|+|||+
T Consensus 344 ~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~Ts~~~VfA~ 421 (449)
T TIGR01316 344 RAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVD-EDQRTSIPGVFAG 421 (449)
T ss_pred EEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcccCCCCeEEeC-CCCccCCCCEEEe
Confidence 12221 22 269999999999999997 67777777 5668888888 5788999999999
Q ss_pred eeccccCC---CcchhHHHHHHHHhhhh
Q 014522 377 GFTRRGLS---GASSDAMRIAQDIGKVW 401 (423)
Q Consensus 377 Gd~~~~~~---~a~~~g~~~a~~i~~~l 401 (423)
||++.+.. .|+.+|+.+|.+|..+|
T Consensus 422 GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 422 GDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 99987544 79999999999998764
No 45
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=1.3e-30 Score=257.23 Aligned_cols=303 Identities=17% Similarity=0.194 Sum_probs=197.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccccc-CCceeecCCCcc-c---cCCCCCCCCCCCCCCCHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRT-YDRLNLHLPKQF-C---QLPKLQFPEDFPEYPTKR 95 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 95 (423)
.|||+|||||++|+++|..|++.|.+|+|||+ +.+||+|.+.. .+...+...... . ....+........ ....
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVS-VDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCc-CCHH
Confidence 37999999999999999999999999999999 78898875432 222111000000 0 0000000000000 1111
Q ss_pred HHH-----------HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 96 QFI-----------QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 96 ~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
.+. .......++.+++++.+. +..++ . ..+.+...+ +...++||+||+||| +.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~------g~~~~~~d~lVlAtG--~~p~~ 145 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFLD--P--GTVLVTGEN------GEETLTAKNIIIATG--SRPRS 145 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCC------CcEEEEeCEEEEcCC--CCCCC
Confidence 221 222344455566655443 32222 2 454455433 325899999999999 77777
Q ss_pred CCCC-CCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHH
Q 014522 165 PDIE-GLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATL 243 (423)
Q Consensus 165 p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~ 243 (423)
|++| +.. +..+++++........+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|.... ++
T Consensus 146 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~--- 213 (461)
T TIGR01350 146 LPGPFDFD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA-----EV--- 213 (461)
T ss_pred CCCCCCCC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH-----HH---
Confidence 6665 222 22233333322333456899999999999999999999999999999988 44443221 11
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CCe
Q 014522 244 MMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CGQ 319 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~ 319 (423)
...+.+.+++.+|+++.+ +.++. +++
T Consensus 214 --------------------------------------------------~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~ 243 (461)
T TIGR01350 214 --------------------------------------------------SKVVAKALKKKGVKILTNTKVTAVEKNDDQ 243 (461)
T ss_pred --------------------------------------------------HHHHHHHHHHcCCEEEeCCEEEEEEEeCCE
Confidence 111234455668888876 66655 334
Q ss_pred E--EEccC--cEecccEEEEcCCCCCCCCC-ccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhH
Q 014522 320 A--ELING--EKLDIDAIVLATGYRSNVPS-WLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDA 390 (423)
Q Consensus 320 v--~~~~g--~~~~~D~vi~a~G~~~~~~~-ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g 390 (423)
+ .+.+| +++++|.||+|+|.+|+... +++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|..||
T Consensus 244 v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g 322 (461)
T TIGR01350 244 VVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEG 322 (461)
T ss_pred EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHH
Confidence 4 33456 47999999999999999843 4677777 5668999998 678899999999999987543 789999
Q ss_pred HHHHHHHhhhh
Q 014522 391 MRIAQDIGKVW 401 (423)
Q Consensus 391 ~~~a~~i~~~l 401 (423)
+.+|.+|.+..
T Consensus 323 ~~aa~~i~~~~ 333 (461)
T TIGR01350 323 IVAAENIAGKE 333 (461)
T ss_pred HHHHHHHcCCC
Confidence 99999998643
No 46
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=4.2e-31 Score=258.25 Aligned_cols=296 Identities=14% Similarity=0.129 Sum_probs=189.7
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCCc-cccCC---CCCCCCCCCCCCCHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPKQ-FCQLP---KLQFPEDFPEYPTKR 95 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~ 95 (423)
.||++||||||+|.++|.. ..|.+|+|||+. .+||++-+. +-|...+..... ..... .+....... -..-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELD-GVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCC-cCCHH
Confidence 3799999999999998876 469999999985 577765443 222211110000 00000 000000000 01222
Q ss_pred HHHHHHHHH-------------HHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 96 QFIQYLESY-------------AEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 96 ~~~~~~~~~-------------~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
.+.++.... .++.+++++.+. ..-+ +. .. |++.+ + +.++||+||+||| +.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~--~~--V~v~~------g-~~~~~d~lViATG--s~p 140 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GP--KT--LRTGD------G-EEITADQVVIAAG--SRP 140 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cC--CE--EEECC------C-CEEEeCEEEEcCC--CCC
Confidence 333332222 223344443332 2111 11 33 66654 4 4799999999999 889
Q ss_pred cCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 163 VMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 163 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
..|.+||.... .+++.+........+++++|||+|.+|+|+|..|++.|.+|+++.|++ .+++..+. ++..
T Consensus 141 ~~p~i~g~~~~---~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~~~ 211 (451)
T PRK07846 141 VIPPVIADSGV---RYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD-----DISE 211 (451)
T ss_pred CCCCCCCcCCc---cEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH-----HHHH
Confidence 88888885432 123333222233457899999999999999999999999999999988 44443321 1110
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG-- 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-- 318 (423)
.+.+.+ +.+|+++.+ +.++..+
T Consensus 212 -----------------------------------------------------~l~~l~-~~~v~i~~~~~v~~i~~~~~ 237 (451)
T PRK07846 212 -----------------------------------------------------RFTELA-SKRWDVRLGRNVVGVSQDGS 237 (451)
T ss_pred -----------------------------------------------------HHHHHH-hcCeEEEeCCEEEEEEEcCC
Confidence 111112 345777766 6666532
Q ss_pred e--EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHH
Q 014522 319 Q--AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAM 391 (423)
Q Consensus 319 ~--v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~ 391 (423)
+ +.+.+|+++++|.|++|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|.+||+
T Consensus 238 ~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~ 316 (451)
T PRK07846 238 GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEAR 316 (451)
T ss_pred EEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHHH
Confidence 3 455678899999999999999998433 456677 5678999998 578899999999999997543 7889999
Q ss_pred HHHHHHhhh
Q 014522 392 RIAQDIGKV 400 (423)
Q Consensus 392 ~~a~~i~~~ 400 (423)
++|+||.+.
T Consensus 317 ~~a~ni~~~ 325 (451)
T PRK07846 317 VVQHNLLHP 325 (451)
T ss_pred HHHHHHcCC
Confidence 999999854
No 47
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=8.4e-31 Score=257.67 Aligned_cols=303 Identities=17% Similarity=0.149 Sum_probs=192.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-----C---CCCccccc-ccCCceeecCCC---------ccccCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERA-----E---CIASLWQK-RTYDRLNLHLPK---------QFCQLPKL 82 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~-----~---~~gg~~~~-~~~~~~~~~~~~---------~~~~~~~~ 82 (423)
.|||+|||||++|+.+|..+++.|.+|++||+. . .+||+|-+ ++.|...+.... ..+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 589999999999999999999999999999973 1 47887655 233322111000 01111100
Q ss_pred C-CCCCCCCCC-CHHHH----HHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEcc
Q 014522 83 Q-FPEDFPEYP-TKRQF----IQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVAT 156 (423)
Q Consensus 83 ~-~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAt 156 (423)
. ..-+|.... ..+.. .+......+..+++++.+. ..-+ + .+...|...+ + +...+.||+||+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~f~---~-~~~v~v~~~~--g---~~~~~~~d~lVIAT 151 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AEFV---D-KHRIKATNKK--G---KEKIYSAERFLIAT 151 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc---C-CCEEEEeccC--C---CceEEEeCEEEEec
Confidence 0 000111000 11111 1122233444566654332 2111 1 1443333222 1 33579999999999
Q ss_pred CCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCC
Q 014522 157 GENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKS 236 (423)
Q Consensus 157 G~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~ 236 (423)
| +.|..|.+||..+. .+.+.+.. .....+++++|||+|.+|+|+|..|++.|.+|+++.|. .++|..+.
T Consensus 152 G--s~p~~p~ipG~~~~---~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~--- 220 (484)
T TIGR01438 152 G--ERPRYPGIPGAKEL---CITSDDLF-SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQ--- 220 (484)
T ss_pred C--CCCCCCCCCCccce---eecHHHhh-cccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--ccccccCH---
Confidence 9 88888889887542 12221222 22234678999999999999999999999999999874 34443332
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceE
Q 014522 237 TFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKR 314 (423)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~ 314 (423)
++ ...+.+.+++.+|+++++ +.+
T Consensus 221 --~~-----------------------------------------------------~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 221 --DC-----------------------------------------------------ANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred --HH-----------------------------------------------------HHHHHHHHHHcCCEEEeCceEEE
Confidence 11 112344456678888876 455
Q ss_pred EeC--Ce--EEEccC---cEecccEEEEcCCCCCCCCCc-cccccc-ccC-CCCCCCCCCCCCCCCCceEEEeecccc-C
Q 014522 315 ISC--GQ--AELING---EKLDIDAIVLATGYRSNVPSW-LQESEF-FSE-NGFPKAPFPHGWKGNAGLYAVGFTRRG-L 383 (423)
Q Consensus 315 ~~~--~~--v~~~~g---~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~-~g~~~~~~~~~~~~~~~vya~Gd~~~~-~ 383 (423)
+.. ++ +++.++ +++++|.||+|+|++||+..+ ++..++ .++ +|.+.+| ++++|+.|+|||+|||+.. .
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~ 324 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQ 324 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCCc
Confidence 543 22 445555 379999999999999998443 567777 343 5888888 5788999999999999852 2
Q ss_pred ---CCcchhHHHHHHHHhhh
Q 014522 384 ---SGASSDAMRIAQDIGKV 400 (423)
Q Consensus 384 ---~~a~~~g~~~a~~i~~~ 400 (423)
..|.+||+.+|++|.+.
T Consensus 325 ~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 325 ELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred cchHHHHHHHHHHHHHHhcC
Confidence 26899999999999853
No 48
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=6.2e-31 Score=272.10 Aligned_cols=282 Identities=18% Similarity=0.173 Sum_probs=197.8
Q ss_pred eEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 24 PVIVGAGPSGLATAACLRDQ---GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 24 vvIIGaG~aGl~~A~~L~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
|||||||+||+++|..|+++ +++|+|||+.+.++ |....+. . .+.+....+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L~--~------------~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILLS--S------------VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------ccccccc--H------------HHCCCCCHHHccCC
Confidence 69999999999999999886 46999999987653 2211110 0 00111122333323
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeeec
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHA 180 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~ 180 (423)
..+.+++.+++++.+++|+.++... .. |.+.+ + ..+.||+||+||| +.|+.|.+||.+...-..+.+
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k~--V~~~~------g-~~~~yD~LVlATG--s~p~~p~ipG~~~~~v~~~rt 126 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQ--KQ--VITDA------G-RTLSYDKLILATG--SYPFILPIPGADKKGVYVFRT 126 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCC--CE--EEECC------C-cEeeCCEEEECCC--CCcCCCCCCCCCCCCEEEeCC
Confidence 3445566799999999999998754 33 77665 4 6899999999999 788888899876432111111
Q ss_pred CCCCC---CCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHH
Q 014522 181 CDYKS---GEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKIL 257 (423)
Q Consensus 181 ~~~~~---~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (423)
.+... ......++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++... .
T Consensus 127 ~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~l----------------d-------- 181 (785)
T TIGR02374 127 IEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQL----------------D-------- 181 (785)
T ss_pred HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhc----------------C--------
Confidence 11111 111246899999999999999999999999999999988 3332211 0
Q ss_pred HHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC----eEEEccCcEeccc
Q 014522 258 LILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG----QAELINGEKLDID 331 (423)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----~v~~~~g~~~~~D 331 (423)
+.....+.+.+++.+|+++.+ +.++..+ ++.++||+++++|
T Consensus 182 ---------------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D 228 (785)
T TIGR02374 182 ---------------------------------QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEAD 228 (785)
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcC
Confidence 011111334456678888876 6666543 3778899999999
Q ss_pred EEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC-------CCcchhHHHHHHHHhhh
Q 014522 332 AIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRGL-------SGASSDAMRIAQDIGKV 400 (423)
Q Consensus 332 ~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~-------~~a~~~g~~~a~~i~~~ 400 (423)
+||+++|++|++ .|.++.++..+ |.+++| .+++|+.|+|||+|||+... ..|..||+++|.||.+.
T Consensus 229 ~Vi~a~G~~Pn~-~la~~~gl~~~-ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 229 LIVMAAGIRPND-ELAVSAGIKVN-RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred EEEECCCCCcCc-HHHHhcCCccC-CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 999999999998 67777777444 446666 47889999999999998521 24789999999999864
No 49
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=2.1e-30 Score=265.80 Aligned_cols=271 Identities=22% Similarity=0.289 Sum_probs=183.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+||||||||+++|..|+++|++|+|+|+.+.+||.++.. ++ .+....++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------IP---------~~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------IP---------QFRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------cc---------cccccHHHHH
Confidence 46799999999999999999999999999999999888876431 11 1122234444
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+.+.+++++.++.+ .+ .... . ....||+||||||++ .+..+.++|... .++.
T Consensus 594 ~die~l~~~GVe~~~gt~V-di-----------~le~------L-~~~gYDaVILATGA~-~~~~l~IpG~~~---gV~s 650 (1019)
T PRK09853 594 HDIEFVKAHGVKFEFGCSP-DL-----------TVEQ------L-KNEGYDYVVVAIGAD-KNGGLKLEGGNQ---NVIK 650 (1019)
T ss_pred HHHHHHHHcCCEEEeCcee-EE-----------Ehhh------h-eeccCCEEEECcCCC-CCCCCCCCCccC---Ccee
Confidence 4456666779998888766 22 1111 1 355689999999953 234446676542 1222
Q ss_pred cCCCC------CCCCCCCCEEEEECCCCCHHHHHHHHhcc-C-CccEEEEecCceeecccccCCChHHHHHHHHhhccHH
Q 014522 180 ACDYK------SGEKYKGKKVLVVGCGNSGMELSLDLSNH-N-ASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW 251 (423)
Q Consensus 180 ~~~~~------~~~~~~~~~v~ViG~G~~~~e~a~~l~~~-g-~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (423)
..+++ ......+++|+|||+|++|+|+|..+.+. | .+|++++|++...+|.... ++
T Consensus 651 aldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~e-----El----------- 714 (1019)
T PRK09853 651 ALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWRE-----EY----------- 714 (1019)
T ss_pred hHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHH-----HH-----------
Confidence 22221 11234578999999999999999999887 4 3799999987433332210 00
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe-------------
Q 014522 252 LVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS------------- 316 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~------------- 316 (423)
.+.+ +.+|+++.. +.++.
T Consensus 715 ----------------------------------------------e~Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg 747 (1019)
T PRK09853 715 ----------------------------------------------EEAL-EDGVEFKELLNPESFDADGTLTCRVMKLG 747 (1019)
T ss_pred ----------------------------------------------HHHH-HcCCEEEeCCceEEEEcCCcEEEEEEEee
Confidence 0000 112222211 11111
Q ss_pred ---CCe----EEEccCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---C
Q 014522 317 ---CGQ----AELINGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---G 385 (423)
Q Consensus 317 ---~~~----v~~~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~ 385 (423)
..+ +...++.++++|.||+|+|..|+. .+++..++ .+++|++.++ .+++|+.|+|||+||++.++. .
T Consensus 748 ~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnt-elle~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~ 825 (1019)
T PRK09853 748 EPDESGRRRPVETGETVTLEADTVITAIGEQVDT-ELLKANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVA 825 (1019)
T ss_pred cccCCCceEEeeCCCeEEEEeCEEEECCCCcCCh-hHHHhcCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHH
Confidence 111 222344689999999999999998 67777777 5678999887 578899999999999986543 7
Q ss_pred cchhHHHHHHHHhhhhH
Q 014522 386 ASSDAMRIAQDIGKVWK 402 (423)
Q Consensus 386 a~~~g~~~a~~i~~~l~ 402 (423)
|+.+|+.+|.+|.+.+.
T Consensus 826 Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 826 AIADARRAADAILSREG 842 (1019)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 99999999999988664
No 50
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=1.1e-30 Score=256.60 Aligned_cols=276 Identities=21% Similarity=0.219 Sum_probs=193.2
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
...++|+|||||++|+++|..|+++|++|+|+|+.+.+||.+... + +.+....++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~ 193 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIV 193 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHH
Confidence 356899999999999999999999999999999998888764321 1 1112234566
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
++..+.+.+.+++++.++.+. .. +++.+ . .+.||+||+|||+. .+..+.+||.+.. + ++
T Consensus 194 ~~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~------~--~~~~d~vvlAtGa~-~~~~~~i~G~~~~-g-v~ 252 (457)
T PRK11749 194 DREVERLLKLGVEIRTNTEVG--------RD--ITLDE------L--RAGYDAVFIGTGAG-LPRFLGIPGENLG-G-VY 252 (457)
T ss_pred HHHHHHHHHcCCEEEeCCEEC--------Cc--cCHHH------H--HhhCCEEEEccCCC-CCCCCCCCCccCC-C-cE
Confidence 666677777898888887651 11 22222 2 37899999999952 3566677776431 1 22
Q ss_pred ecCCCC--------CCCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHHHHHHhhcc
Q 014522 179 HACDYK--------SGEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELATLMMKWLP 249 (423)
Q Consensus 179 ~~~~~~--------~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (423)
+..++. ......+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|...
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~----------------- 315 (457)
T PRK11749 253 SAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASE----------------- 315 (457)
T ss_pred EHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH-----------------
Confidence 211111 1122357899999999999999999999987 79999997632222111
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe-----EEE
Q 014522 250 LWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ-----AEL 322 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~-----v~~ 322 (423)
...+.+++.+|+++.+ +.++..++ |.+
T Consensus 316 ----------------------------------------------~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~ 349 (457)
T PRK11749 316 ----------------------------------------------EEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEF 349 (457)
T ss_pred ----------------------------------------------HHHHHHHHCCCEEEecCCcEEEEecCCceEEEEE
Confidence 0122234556777655 55554322 433
Q ss_pred c-------------------cCcEecccEEEEcCCCCCCCCCccc-cccc-ccCCCCCCCCCCCCCCCCCceEEEeeccc
Q 014522 323 I-------------------NGEKLDIDAIVLATGYRSNVPSWLQ-ESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRR 381 (423)
Q Consensus 323 ~-------------------~g~~~~~D~vi~a~G~~~~~~~ll~-~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~ 381 (423)
. +++++++|.||+|+|++|+. .++. ..++ .+.+|.+.++..+++|+.|+|||+||++.
T Consensus 350 ~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~ 428 (457)
T PRK11749 350 VRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVT 428 (457)
T ss_pred EEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc-hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCC
Confidence 2 23479999999999999996 5543 4456 56688998885478899999999999996
Q ss_pred cCC---CcchhHHHHHHHHhhhhHH
Q 014522 382 GLS---GASSDAMRIAQDIGKVWKE 403 (423)
Q Consensus 382 ~~~---~a~~~g~~~a~~i~~~l~~ 403 (423)
+.. .|+.+|+.+|.+|...+.+
T Consensus 429 ~~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 429 GAATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 533 7999999999999998865
No 51
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=1.1e-29 Score=264.66 Aligned_cols=277 Identities=21% Similarity=0.219 Sum_probs=190.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||||||+||..|++.|++|+|||+.+.+||..+. .+ |.|....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y---------------GI---------P~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY---------------GI---------PEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc---------------cC---------CCCcChHHHHH
Confidence 4789999999999999999999999999999999999987543 22 22334556677
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+..+..|++++.++.+. .. +++.+ . ....||.||+|||+ ..|+.+.+||.+. .+ ++.
T Consensus 361 ~~i~~l~~~Gv~f~~n~~vG--------~d--it~~~------l-~~~~yDAV~LAtGA-~~pr~l~IpG~dl-~G-V~~ 420 (944)
T PRK12779 361 DVVEKIKLLGGRFVKNFVVG--------KT--ATLED------L-KAAGFWKIFVGTGA-GLPTFMNVPGEHL-LG-VMS 420 (944)
T ss_pred HHHHHHHhhcCeEEEeEEec--------cE--EeHHH------h-ccccCCEEEEeCCC-CCCCcCCCCCCcC-cC-cEE
Confidence 76777778899988877551 11 44443 2 34679999999995 2577778888543 12 111
Q ss_pred cCCCC---------------CCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHH
Q 014522 180 ACDYK---------------SGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLM 244 (423)
Q Consensus 180 ~~~~~---------------~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~ 244 (423)
..+++ ......+++|+|||+|.+|+|+|..+.+.|++|++++|++....|.... +
T Consensus 421 a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~-----e----- 490 (944)
T PRK12779 421 ANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVE-----E----- 490 (944)
T ss_pred HHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHH-----H-----
Confidence 11111 0112357999999999999999999999999999999986322121100 0
Q ss_pred HhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC-----
Q 014522 245 MKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC----- 317 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~----- 317 (423)
+.. ..+.+++++.. +.++..
T Consensus 491 ----------------------------------------------------~~~-a~eeGV~~~~~~~p~~i~~d~~~~ 517 (944)
T PRK12779 491 ----------------------------------------------------LHH-ALEEGINLAVLRAPREFIGDDHTH 517 (944)
T ss_pred ----------------------------------------------------HHH-HHHCCCEEEeCcceEEEEecCCCC
Confidence 000 11223333322 222211
Q ss_pred -----------------Ce--EEEccC--cEecccEEEEcCCCCCCCCCcc-ccccc-ccCCCCCCCCCCCCCCCCCceE
Q 014522 318 -----------------GQ--AELING--EKLDIDAIVLATGYRSNVPSWL-QESEF-FSENGFPKAPFPHGWKGNAGLY 374 (423)
Q Consensus 318 -----------------~~--v~~~~g--~~~~~D~vi~a~G~~~~~~~ll-~~~~~-~~~~g~~~~~~~~~~~~~~~vy 374 (423)
++ ....+| .++++|.||+|+|+.|+. .+. ...++ .+++|.++++...++|+.|+||
T Consensus 518 ~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVF 596 (944)
T PRK12779 518 FVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVY 596 (944)
T ss_pred EEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCCCCEE
Confidence 01 001123 369999999999999986 332 33466 4668998888556889999999
Q ss_pred EEeeccccCC---CcchhHHHHHHHHhhhhHHH
Q 014522 375 AVGFTRRGLS---GASSDAMRIAQDIGKVWKEE 404 (423)
Q Consensus 375 a~Gd~~~~~~---~a~~~g~~~a~~i~~~l~~~ 404 (423)
|+||+.++.. .|+.+|+.+|.+|...|.-.
T Consensus 597 AaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 597 SGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred EEEcCCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998753 79999999999999888753
No 52
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=8.2e-30 Score=250.43 Aligned_cols=295 Identities=17% Similarity=0.215 Sum_probs=188.3
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceee-cCCC--------ccccCCCCCCCCCCCCCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNL-HLPK--------QFCQLPKLQFPEDFPEYP 92 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~ 92 (423)
+|+||||||+|+++|..|++.|.+|+|||+.. .||++-+. +.+...+ .... ..+.+.. +.. ....
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~---~~~-~~~~ 76 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITL---PNG-SISI 76 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccc---cCC-CCcc
Confidence 79999999999999999999999999999874 66665432 2221111 0000 0111110 000 0001
Q ss_pred CHHHHHHHH-----------HHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 93 TKRQFIQYL-----------ESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 93 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
....+..+. ....++.++++..+. +..++ .....|+.++ +..+++||+||+||| +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~~----~~~v~v~~~~------~~~~~~~d~lviATG--s~ 143 (458)
T PRK06912 77 DWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFET----DHRVRVEYGD------KEEVVDAEQFIIAAG--SE 143 (458)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcc----CCEEEEeeCC------CcEEEECCEEEEeCC--CC
Confidence 222222222 222333455543322 32222 2554455433 335799999999999 77
Q ss_pred CcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHH
Q 014522 162 RVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELA 241 (423)
Q Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~ 241 (423)
|..|++++.... .++++ .........+++++|||+|++|+|+|..+.+.|.+|+++.+.+ .++|..+. ++
T Consensus 144 p~~~p~~~~~~~--~v~~~-~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~-----e~- 213 (458)
T PRK06912 144 PTELPFAPFDGK--WIINS-KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDE-----DI- 213 (458)
T ss_pred CCCCCCCCCCCC--eEEcc-hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccH-----HH-
Confidence 776666654321 22332 2222233456899999999999999999999999999999988 44443321 11
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe
Q 014522 242 TLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ 319 (423)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~ 319 (423)
...+.+.+++.+|+++++ +.++..++
T Consensus 214 ----------------------------------------------------~~~l~~~L~~~GI~i~~~~~V~~i~~~~ 241 (458)
T PRK06912 214 ----------------------------------------------------AHILREKLENDGVKIFTGAALKGLNSYK 241 (458)
T ss_pred ----------------------------------------------------HHHHHHHHHHCCCEEEECCEEEEEEEcC
Confidence 111234455678888876 66766432
Q ss_pred --EEEc-cC--cEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccchh
Q 014522 320 --AELI-NG--EKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSD 389 (423)
Q Consensus 320 --v~~~-~g--~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 389 (423)
+.+. +| +++++|.||+|+|++|+...+ ++..++ .+++| +.+| .+++|+.|+|||+|||..++. .|.+|
T Consensus 242 ~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~ 319 (458)
T PRK06912 242 KQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHE 319 (458)
T ss_pred CEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHH
Confidence 4443 34 369999999999999998433 456676 44556 7777 578899999999999997544 78999
Q ss_pred HHHHHHHHhh
Q 014522 390 AMRIAQDIGK 399 (423)
Q Consensus 390 g~~~a~~i~~ 399 (423)
|+.+|.++.+
T Consensus 320 g~~aa~~~~g 329 (458)
T PRK06912 320 GTTAALHASG 329 (458)
T ss_pred HHHHHHHHcC
Confidence 9999999975
No 53
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=1.5e-29 Score=253.68 Aligned_cols=307 Identities=17% Similarity=0.198 Sum_probs=188.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCCCcccccccC-Ccee-ecCCC-----------ccccCCCCCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERA-ECIASLWQKRTY-DRLN-LHLPK-----------QFCQLPKLQFPE 86 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~-~~~gg~~~~~~~-~~~~-~~~~~-----------~~~~~~~~~~~~ 86 (423)
.|||+|||+|++|..+|..++++|.+|+|||+. ..+||++-+..+ |... +.... ..+.+....||.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999974 467887654222 1111 00000 011111000000
Q ss_pred ---------CC---CCCCCHHHHHHHHHHHHHHcC--Cc-------eeccceEEEEEEeC----CCCeEEEEEcccCCCC
Q 014522 87 ---------DF---PEYPTKRQFIQYLESYAEKFE--IN-------PRFNECVQSARYDE----TSGLWRVKTASSAGST 141 (423)
Q Consensus 87 ---------~~---~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~v~~v~~~~----~~~~~~v~~~~~~~~~ 141 (423)
.+ ..-.....+.++.+....+.. +. +........+.... +... |.... +
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~--v~v~~-~--- 269 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNT--IKSEK-S--- 269 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCe--EEEcc-C---
Confidence 00 001133344444333332211 00 00111111121111 1122 33321 1
Q ss_pred CceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEE
Q 014522 142 KTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVV 221 (423)
Q Consensus 142 ~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~ 221 (423)
+ +++.||+|||||| +.|..|..++.... .++ +++........+++++|||+|.+|+|+|..|++.|.+|+++.
T Consensus 270 -g-~~i~ad~lIIATG--S~P~~P~~~~~~~~--~V~-ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe 342 (659)
T PTZ00153 270 -G-KEFKVKNIIIATG--STPNIPDNIEVDQK--SVF-TSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFE 342 (659)
T ss_pred -C-EEEECCEEEEcCC--CCCCCCCCCCCCCC--cEE-ehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 3 6899999999999 88887765554321 233 333322233457899999999999999999999999999999
Q ss_pred ecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhh-
Q 014522 222 RSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKK- 300 (423)
Q Consensus 222 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 300 (423)
+.+ .++|..+. ++... +.+.
T Consensus 343 ~~~-~ll~~~d~-----eis~~-----------------------------------------------------l~~~l 363 (659)
T PTZ00153 343 YSP-QLLPLLDA-----DVAKY-----------------------------------------------------FERVF 363 (659)
T ss_pred ccC-cccccCCH-----HHHHH-----------------------------------------------------HHHHH
Confidence 998 45554332 11111 1222
Q ss_pred hhcCCeEEecC--ceEEeCCe----EEE--cc-------C--------cEecccEEEEcCCCCCCCCCc-ccccccccCC
Q 014522 301 IRSGHINVVPG--IKRISCGQ----AEL--IN-------G--------EKLDIDAIVLATGYRSNVPSW-LQESEFFSEN 356 (423)
Q Consensus 301 ~~~~~i~~~~~--i~~~~~~~----v~~--~~-------g--------~~~~~D~vi~a~G~~~~~~~l-l~~~~~~~~~ 356 (423)
+++.+|+++++ +.+++.+. +.+ .+ + +++++|.||+|+|++||+..+ ++..++..++
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~ 443 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKR 443 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccC
Confidence 23567888877 66665431 332 21 1 379999999999999998545 5666775456
Q ss_pred CCCCCCCCCCCCC------CCceEEEeeccccCC---CcchhHHHHHHHHhhh
Q 014522 357 GFPKAPFPHGWKG------NAGLYAVGFTRRGLS---GASSDAMRIAQDIGKV 400 (423)
Q Consensus 357 g~~~~~~~~~~~~------~~~vya~Gd~~~~~~---~a~~~g~~~a~~i~~~ 400 (423)
|++.+| ++++|+ .|+|||+|||++... .|..||+.+|++|.+.
T Consensus 444 G~I~VD-e~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 444 GFVSVD-EHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CEEeEC-CCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 989888 577775 699999999997544 7889999999999864
No 54
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=7.6e-30 Score=244.25 Aligned_cols=285 Identities=21% Similarity=0.234 Sum_probs=197.1
Q ss_pred CeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 23 GPVIVGAGPSGLATAACLRDQ---GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
+|||||||+||+.+|..|+++ +.+|+|||+++..- |... + +....+.....++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~----------~-----~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM----------L-----PGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch----------h-----hHHHheeCCHHHhcc
Confidence 589999999999999999754 57999999876421 1100 0 000011123344555
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
.+.+++++++++++. .+|+.++.+. .. |.+.+ + ++++||+||+||| +.+..|.+||..+.......
T Consensus 59 ~~~~~~~~~gv~~~~-~~v~~id~~~--~~--V~~~~------g-~~~~yD~LviAtG--~~~~~~~i~g~~~~~~~~~~ 124 (364)
T TIGR03169 59 DLRRLARQAGARFVI-AEATGIDPDR--RK--VLLAN------R-PPLSYDVLSLDVG--STTPLSGVEGAADLAVPVKP 124 (364)
T ss_pred cHHHHHHhcCCEEEE-EEEEEEeccc--CE--EEECC------C-CcccccEEEEccC--CCCCCCCCCcccccccccCC
Confidence 566777778888655 5799998765 44 77765 4 5799999999999 88888888885432100000
Q ss_pred ---cCC----CCC--CCCCCCCEEEEECCCCCHHHHHHHHhcc----C--CccEEEEecCceeecccccCCChHHHHHHH
Q 014522 180 ---ACD----YKS--GEKYKGKKVLVVGCGNSGMELSLDLSNH----N--ASPSMVVRSSVHVLPREILGKSTFELATLM 244 (423)
Q Consensus 180 ---~~~----~~~--~~~~~~~~v~ViG~G~~~~e~a~~l~~~----g--~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~ 244 (423)
... ... ......++++|||+|.+|+|+|..|++. | .+|+++ +.+ .+++....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~----------- 191 (364)
T TIGR03169 125 IENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPA----------- 191 (364)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCH-----------
Confidence 000 000 0112357999999999999999999853 3 478888 444 33332110
Q ss_pred HhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCeEEE
Q 014522 245 MKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQAEL 322 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~v~~ 322 (423)
.....+.+.+++.+|+++.+ +.++..+.+.+
T Consensus 192 -----------------------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~ 224 (364)
T TIGR03169 192 -----------------------------------------------KVRRLVLRLLARRGIEVHEGAPVTRGPDGALIL 224 (364)
T ss_pred -----------------------------------------------HHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEe
Confidence 11112344566778999887 78887778888
Q ss_pred ccCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCC-CCCceEEEeeccccC--------CCcchhHHH
Q 014522 323 INGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWK-GNAGLYAVGFTRRGL--------SGASSDAMR 392 (423)
Q Consensus 323 ~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~-~~~~vya~Gd~~~~~--------~~a~~~g~~ 392 (423)
.+|+++++|.||+|+|.+|+ .++...++ .++.|++.+|. ++++ +.|+|||+|||+... ..|++||+.
T Consensus 225 ~~g~~i~~D~vi~a~G~~p~--~~l~~~gl~~~~~g~i~vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~ 301 (364)
T TIGR03169 225 ADGRTLPADAILWATGARAP--PWLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPI 301 (364)
T ss_pred CCCCEEecCEEEEccCCChh--hHHHHcCCCcCCCCeEEECC-ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHH
Confidence 89999999999999999998 45555566 46679999984 5665 999999999998521 158999999
Q ss_pred HHHHHhhhhHHHHH
Q 014522 393 IAQDIGKVWKEETK 406 (423)
Q Consensus 393 ~a~~i~~~l~~~~~ 406 (423)
+|+||...+.+.+.
T Consensus 302 ~a~ni~~~l~g~~~ 315 (364)
T TIGR03169 302 LAANLRASLRGQPL 315 (364)
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999876543
No 55
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2e-29 Score=222.31 Aligned_cols=305 Identities=16% Similarity=0.217 Sum_probs=205.9
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceee--cCCC---ccccCCCCCCCC------C
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNL--HLPK---QFCQLPKLQFPE------D 87 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~------~ 87 (423)
...+|.+|||||.+|+++|+..++.|.++.++|-.-.+||++-...+-.-++ .... .+.....+.|+. +
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 3589999999999999999999999999999999878888664422211111 1110 011111222222 1
Q ss_pred CCCCC-CHHHHHHHHHHHHHH----cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 88 FPEYP-TKRQFIQYLESYAEK----FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
|..+. .++.....+....++ ..+.+..+. .. +. +.+...|...+. ....+++++++||+| ++|
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-a~---f~-~~~~v~V~~~d~-----~~~~Ytak~iLIAtG--g~p 165 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-AR---FV-SPGEVEVEVNDG-----TKIVYTAKHILIATG--GRP 165 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeee-EE---Ec-CCCceEEEecCC-----eeEEEecceEEEEeC--Ccc
Confidence 21111 233333333333332 233322221 11 11 124433544441 235599999999999 999
Q ss_pred cCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 163 VMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 163 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
.+|.+||.+.- +.+..+. ..+..+++++|+|+|++|+|+|..++.+|.+++++.|.. .+|-.+
T Consensus 166 ~~PnIpG~E~g----idSDgff-~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~F----------- 228 (478)
T KOG0405|consen 166 IIPNIPGAELG----IDSDGFF-DLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGF----------- 228 (478)
T ss_pred CCCCCCchhhc----ccccccc-chhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcch-----------
Confidence 99999997631 3333333 355578999999999999999999999999999999998 332222
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG-- 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-- 318 (423)
++.+.+...+.+...+|+++++ +.++...
T Consensus 229 -----------------------------------------------D~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~ 261 (478)
T KOG0405|consen 229 -----------------------------------------------DEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD 261 (478)
T ss_pred -----------------------------------------------hHHHHHHHHHHhhhcceeecccccceeeeecCC
Confidence 2233334455666778999876 5555532
Q ss_pred e---EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccC---CCcchhH
Q 014522 319 Q---AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGL---SGASSDA 390 (423)
Q Consensus 319 ~---v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~~g 390 (423)
+ +....|+...+|.++||+|++|++..| ++..|+ .++.|.+.+| ++++|+.|+||++||+.+-+ +.|+.+|
T Consensus 262 g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaag 340 (478)
T KOG0405|consen 262 GLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAG 340 (478)
T ss_pred CceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhh
Confidence 2 344556556799999999999998777 888898 6779999999 79999999999999998754 4799999
Q ss_pred HHHHHHHhhh
Q 014522 391 MRIAQDIGKV 400 (423)
Q Consensus 391 ~~~a~~i~~~ 400 (423)
+.+|+.+.+.
T Consensus 341 r~la~rlF~~ 350 (478)
T KOG0405|consen 341 RKLANRLFGG 350 (478)
T ss_pred hhHHHHhhcC
Confidence 9999998874
No 56
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=2.2e-29 Score=246.49 Aligned_cols=296 Identities=15% Similarity=0.150 Sum_probs=183.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccC-CceeecCCCcc-c---cCCCCCCCCCCCCCCCHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTY-DRLNLHLPKQF-C---QLPKLQFPEDFPEYPTKR 95 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 95 (423)
+||++|||+|++|..+|.. ..|.+|+|||+. .+||++-+..+ |...+...... . ....+....... -..-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~-~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEID-SVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCC-ccCHH
Confidence 5899999999999998654 469999999985 67886654322 22111100000 0 000000000000 01122
Q ss_pred HHHHHHHH------------HH---HHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 96 QFIQYLES------------YA---EKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 96 ~~~~~~~~------------~~---~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
.+.++... .. ++.+++++.++.+.. +.+.|.+.+ + .+++||+||+||| +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-------~~~~V~~~~------g-~~~~~d~lIiATG--s 141 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV-------GPRTLRTGD------G-EEITGDQIVIAAG--S 141 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe-------cCCEEEECC------C-cEEEeCEEEEEEC--C
Confidence 22222111 11 113555554443221 223366654 4 5799999999999 7
Q ss_pred CCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHH
Q 014522 161 ERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFEL 240 (423)
Q Consensus 161 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~ 240 (423)
.|..|...+.. +..+.+.+........+++++|||+|++|+|+|..|++.|.+|+++.+.+ .+++..+. ++
T Consensus 142 ~p~~p~~~~~~---~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~ 212 (452)
T TIGR03452 142 RPYIPPAIADS---GVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDE-----DI 212 (452)
T ss_pred CCCCCCCCCCC---CCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCH-----HH
Confidence 88777543321 11122222221222347899999999999999999999999999999988 34343221 11
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC-
Q 014522 241 ATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC- 317 (423)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~- 317 (423)
.. .+.+.+ +.+|+++.+ +.++..
T Consensus 213 ~~-----------------------------------------------------~l~~~~-~~gI~i~~~~~V~~i~~~ 238 (452)
T TIGR03452 213 SD-----------------------------------------------------RFTEIA-KKKWDIRLGRNVTAVEQD 238 (452)
T ss_pred HH-----------------------------------------------------HHHHHH-hcCCEEEeCCEEEEEEEc
Confidence 10 011112 235777765 666653
Q ss_pred -Ce--EEEccCcEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccchh
Q 014522 318 -GQ--AELINGEKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSD 389 (423)
Q Consensus 318 -~~--v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 389 (423)
++ +.+.+|+++++|.|++|+|++|++..+ ++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|.+|
T Consensus 239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~ 317 (452)
T TIGR03452 239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVANAE 317 (452)
T ss_pred CCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHHHH
Confidence 23 445678899999999999999998333 455677 5678999998 578899999999999997643 68899
Q ss_pred HHHHHHHHhhh
Q 014522 390 AMRIAQDIGKV 400 (423)
Q Consensus 390 g~~~a~~i~~~ 400 (423)
|+++|+||.+.
T Consensus 318 g~~~a~ni~~~ 328 (452)
T TIGR03452 318 ARVVKHNLLHP 328 (452)
T ss_pred HHHHHHHhcCC
Confidence 99999999864
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=8.2e-29 Score=235.38 Aligned_cols=286 Identities=20% Similarity=0.197 Sum_probs=186.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||+|++|+++|..|++.|.+++++|+.+.+||.+... ++.. ......+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~~--------~~~~~~~~~ 73 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPEF--------RIPIERVRE 73 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cccc--------ccCHHHHHH
Confidence 35689999999999999999999999999999998887754321 0000 012233444
Q ss_pred HHHHHHHHcCCceeccceEEEEEE--eCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCcee
Q 014522 100 YLESYAEKFEINPRFNECVQSARY--DETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~ 177 (423)
...++ .+.+++++.++.+..++. ....+.|........ + ..+.||+||+|||+ ..+..|.+||.+... +
T Consensus 74 ~~~~l-~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~d~lviAtGs-~~~~~~~ipg~~~~~--v 144 (352)
T PRK12770 74 GVKEL-EEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE----E-LVKKYDAVLIATGT-WKSRKLGIPGEDLPG--V 144 (352)
T ss_pred HHHHH-HhCCeEEecCcEEeeccccccccccccccccCCHH----H-HHhhCCEEEEEeCC-CCCCcCCCCCccccC--c
Confidence 44444 445888888887765432 111122222211100 1 24799999999994 146677788765321 1
Q ss_pred eecC-------C--C--C---CCCCCCCCEEEEECCCCCHHHHHHHHhccCCc-cEEEEecCceeecccccCCChHHHHH
Q 014522 178 IHAC-------D--Y--K---SGEKYKGKKVLVVGCGNSGMELSLDLSNHNAS-PSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 178 ~~~~-------~--~--~---~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
+... . . . ......+++++|||+|.+|+|+|..|...|.+ |+++.|.+....+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~----------- 213 (352)
T PRK12770 145 YSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG----------- 213 (352)
T ss_pred eeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC-----------
Confidence 1110 0 0 0 11123468999999999999999999988887 999998762110000
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe-
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ- 319 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~- 319 (423)
....+.+++.+|+++++ +.++..++
T Consensus 214 ----------------------------------------------------~~~~~~l~~~gi~i~~~~~v~~i~~~~~ 241 (352)
T PRK12770 214 ----------------------------------------------------KYEIERLIARGVEFLELVTPVRIIGEGR 241 (352)
T ss_pred ----------------------------------------------------HHHHHHHHHcCCEEeeccCceeeecCCc
Confidence 00112233445665554 34443221
Q ss_pred ---EEE--------------------ccCcEecccEEEEcCCCCCCCCCcccc-ccc-ccCCCCCCCCCCCCCCCCCceE
Q 014522 320 ---AEL--------------------INGEKLDIDAIVLATGYRSNVPSWLQE-SEF-FSENGFPKAPFPHGWKGNAGLY 374 (423)
Q Consensus 320 ---v~~--------------------~~g~~~~~D~vi~a~G~~~~~~~ll~~-~~~-~~~~g~~~~~~~~~~~~~~~vy 374 (423)
+.+ .+++++++|.||+++|++|++ .+..+ +++ .+++|++.+| .+++++.|+||
T Consensus 242 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~~~~~g~i~vd-~~~~t~~~~vy 319 (352)
T PRK12770 242 VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIELNRKGEIVVD-EKHMTSREGVF 319 (352)
T ss_pred EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCceecCCCcEeeC-CCcccCCCCEE
Confidence 111 123479999999999999987 56555 676 5667888888 46778999999
Q ss_pred EEeeccccCC---CcchhHHHHHHHHhhhhH
Q 014522 375 AVGFTRRGLS---GASSDAMRIAQDIGKVWK 402 (423)
Q Consensus 375 a~Gd~~~~~~---~a~~~g~~~a~~i~~~l~ 402 (423)
++|||+.++. .|+.+|+.+|.+|...|.
T Consensus 320 aiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 320 AAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred EEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999987433 799999999999988874
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=2.4e-29 Score=260.50 Aligned_cols=275 Identities=20% Similarity=0.245 Sum_probs=186.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+||||||||++||..|+++|++|+|||+.+.+||.+.. .++.+. ...++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~r---------lp~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPEFR---------LPKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCCC---------CCHHHHH
Confidence 4679999999999999999999999999999998888886532 222221 1233455
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+.+++++++.++.+. .. +++.+ . ....||.||+|||+ ..|..+.+||.+.. + +++
T Consensus 486 ~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~------l-~~~~ydavvlAtGa-~~~~~l~ipG~~~~-g-V~~ 545 (752)
T PRK12778 486 VEIENLKKLGVKFETDVIVG--------KT--ITIEE------L-EEEGFKGIFIASGA-GLPNFMNIPGENSN-G-VMS 545 (752)
T ss_pred HHHHHHHHCCCEEECCCEEC--------Cc--CCHHH------H-hhcCCCEEEEeCCC-CCCCCCCCCCCCCC-C-cEE
Confidence 55566677899988877541 11 33332 2 35679999999995 25777778886531 1 111
Q ss_pred cCCC-------------CCCCCCCCCEEEEECCCCCHHHHHHHHhccCCc-cEEEEecCceeecccccCCChHHHHHHHH
Q 014522 180 ACDY-------------KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNAS-PSMVVRSSVHVLPREILGKSTFELATLMM 245 (423)
Q Consensus 180 ~~~~-------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-V~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
..++ .......+++|+|||+|++|+|+|..+.+.|.+ |++++|++...+|....
T Consensus 546 ~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~------------ 613 (752)
T PRK12778 546 SNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE------------ 613 (752)
T ss_pred HHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH------------
Confidence 1111 011224578999999999999999999999987 99999986322221110
Q ss_pred hhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce--
Q 014522 246 KWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ-- 319 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~-- 319 (423)
..+.+++.+|+++.. +.++.. ++
T Consensus 614 ---------------------------------------------------e~~~~~~~GV~i~~~~~~~~i~~~~~g~v 642 (752)
T PRK12778 614 ---------------------------------------------------EVKHAKEEGIEFLTLHNPIEYLADEKGWV 642 (752)
T ss_pred ---------------------------------------------------HHHHHHHcCCEEEecCcceEEEECCCCEE
Confidence 001122334444432 222221 11
Q ss_pred --EEEc------------------cC--cEecccEEEEcCCCCCCCCCccccc-cc-ccCCCCCCCCCCCCCCCCCceEE
Q 014522 320 --AELI------------------NG--EKLDIDAIVLATGYRSNVPSWLQES-EF-FSENGFPKAPFPHGWKGNAGLYA 375 (423)
Q Consensus 320 --v~~~------------------~g--~~~~~D~vi~a~G~~~~~~~ll~~~-~~-~~~~g~~~~~~~~~~~~~~~vya 375 (423)
+.+. .| .++++|.||+|+|+.|+. .++... ++ .+++|.+.+| ++++|+.|+|||
T Consensus 643 ~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~gVfA 720 (752)
T PRK12778 643 KQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLELNRKGTIVVD-EEMQSSIPGIYA 720 (752)
T ss_pred EEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc-cccccccCceECCCCCEEeC-CCCCCCCCCEEE
Confidence 1110 12 369999999999999997 555543 66 5667889888 456899999999
Q ss_pred EeeccccCC---CcchhHHHHHHHHhhhhHH
Q 014522 376 VGFTRRGLS---GASSDAMRIAQDIGKVWKE 403 (423)
Q Consensus 376 ~Gd~~~~~~---~a~~~g~~~a~~i~~~l~~ 403 (423)
+||++.+.. .|+.+|+.+|.+|.+.|..
T Consensus 721 ~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 721 GGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred eCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999997643 7999999999999998853
No 59
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.9e-29 Score=206.44 Aligned_cols=288 Identities=17% Similarity=0.243 Sum_probs=209.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecC----CCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERA----ECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKR 95 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~----~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (423)
.+.+|+|||+|||+..+|+.+++..++-+++|.- ..+||.... ....-.+|.+ |.-....
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT----------TT~veNfPGF------Pdgi~G~ 70 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT----------TTDVENFPGF------PDGITGP 70 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee----------eeccccCCCC------CcccccH
Confidence 3558999999999999999999999999999963 122332111 1111122211 2224788
Q ss_pred HHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCC--CCC
Q 014522 96 QFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGL--ADF 173 (423)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~--~~~ 173 (423)
++++.+++++.++|.+++.++ |.+++... ..|.+.++. +.+.+|.||+|||+.++ ...+||. .+|
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ss--kpF~l~td~--------~~v~~~avI~atGAsAk--Rl~~pg~ge~~f 137 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITET-VSKVDLSS--KPFKLWTDA--------RPVTADAVILATGASAK--RLHLPGEGEGEF 137 (322)
T ss_pred HHHHHHHHHHHhhcceeeeee-hhhccccC--CCeEEEecC--------CceeeeeEEEeccccee--eeecCCCCcchH
Confidence 999999999999999966655 88888877 888888765 58999999999996443 3456654 336
Q ss_pred CceeeecCCCCCCCC--CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHH
Q 014522 174 GGEVIHACDYKSGEK--YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW 251 (423)
Q Consensus 174 ~~~~~~~~~~~~~~~--~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (423)
+.+-+..|..++... +..|-.+|||+|.+++|-|..|.+.+.+|++++|++.+. . ..
T Consensus 138 WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR-A-----------s~--------- 196 (322)
T KOG0404|consen 138 WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR-A-----------SK--------- 196 (322)
T ss_pred HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh-H-----------HH---------
Confidence 777788888888755 889999999999999999999999999999999998321 0 00
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC-----eEE---
Q 014522 252 LVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG-----QAE--- 321 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-----~v~--- 321 (423)
.|+ .+.....+|+++.+ +.+...+ ++.
T Consensus 197 -------~Mq------------------------------------~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn 233 (322)
T KOG0404|consen 197 -------IMQ------------------------------------QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKN 233 (322)
T ss_pred -------HHH------------------------------------HHHhcCCCeEEEechhhhhhccCcccccceEEEe
Confidence 011 12233457777665 2222222 122
Q ss_pred --EccCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccc----cCCCcchhHHHHH
Q 014522 322 --LINGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRR----GLSGASSDAMRIA 394 (423)
Q Consensus 322 --~~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~----~~~~a~~~g~~~a 394 (423)
..+.+.++++-+++++|..|++ .|++. ++ ++.+|++++.+....|+.|++||+||+.. ...+|...|.++|
T Consensus 234 ~~tge~~dl~v~GlFf~IGH~Pat-~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaa 311 (322)
T KOG0404|consen 234 VKTGEETDLPVSGLFFAIGHSPAT-KFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAA 311 (322)
T ss_pred cccCcccccccceeEEEecCCchh-hHhcC-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhh
Confidence 2233479999999999999998 77777 45 67899999997788899999999999975 2346667777777
Q ss_pred HHHhhhhH
Q 014522 395 QDIGKVWK 402 (423)
Q Consensus 395 ~~i~~~l~ 402 (423)
....++|.
T Consensus 312 ldAe~yL~ 319 (322)
T KOG0404|consen 312 LDAERYLT 319 (322)
T ss_pred hhHHHHhh
Confidence 76666654
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=7.5e-29 Score=255.76 Aligned_cols=271 Identities=20% Similarity=0.279 Sum_probs=177.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+||||||||++||..|++.|++|+|+|+.+.+||..... ++. +....+..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~---------~rlp~e~l~ 591 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPE---------FRISAESIQ 591 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------ccc---------cCCCHHHHH
Confidence 45799999999999999999999999999999999888865321 111 111223444
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
+..+.+.+++++++.++.. . ++... . ....||+||+|||++ .+..+.++|... .++.
T Consensus 592 ~~ie~l~~~GVe~~~g~~~----------d--~~ve~------l-~~~gYDaVIIATGA~-~~~~l~I~G~~~---~v~~ 648 (1012)
T TIGR03315 592 KDIELVKFHGVEFKYGCSP----------D--LTVAE------L-KNQGYKYVILAIGAW-KHGPLRLEGGGE---RVLK 648 (1012)
T ss_pred HHHHHHHhcCcEEEEeccc----------c--eEhhh------h-hcccccEEEECCCCC-CCCCCCcCCCCc---ceee
Confidence 4445556678887666321 0 12221 1 345689999999953 233445666432 1222
Q ss_pred cCCCCC------CCCCCCCEEEEECCCCCHHHHHHHHhcc-CC-ccEEEEecCceeecccccCCChHHHHHHHHhhccHH
Q 014522 180 ACDYKS------GEKYKGKKVLVVGCGNSGMELSLDLSNH-NA-SPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW 251 (423)
Q Consensus 180 ~~~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~-g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (423)
..++.. .....+++|+|||+|.+|+|+|..+.+. |. +|++++|+....+|.... +
T Consensus 649 avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~e-----E------------ 711 (1012)
T TIGR03315 649 SLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASRE-----E------------ 711 (1012)
T ss_pred HHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHH-----H------------
Confidence 211111 1224589999999999999999999886 75 799999987433222210 0
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC-----------
Q 014522 252 LVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG----------- 318 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----------- 318 (423)
+.+.+ +.+|+++.. +.++..+
T Consensus 712 ---------------------------------------------l~~al-eeGVe~~~~~~p~~I~~g~l~v~~~~l~~ 745 (1012)
T TIGR03315 712 ---------------------------------------------LEEAL-EDGVDFKELLSPESFEDGTLTCEVMKLGE 745 (1012)
T ss_pred ---------------------------------------------HHHHH-HcCCEEEeCCceEEEECCeEEEEEEEeec
Confidence 00001 122332221 1111111
Q ss_pred ----e--EEEccCc--EecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Cc
Q 014522 319 ----Q--AELINGE--KLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GA 386 (423)
Q Consensus 319 ----~--v~~~~g~--~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a 386 (423)
+ ....+|+ ++++|.||+|+|..|+. .+++..++ .+++|++.+|...++|+.|+|||+||++.++. .|
T Consensus 746 ~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt-~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~A 824 (1012)
T TIGR03315 746 PDASGRRRPVGTGETVDLPADTVIAAVGEQVDT-DLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEA 824 (1012)
T ss_pred ccCCCceeeecCCCeEEEEeCEEEEecCCcCCh-HHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHH
Confidence 1 1112343 68999999999999997 67777777 57789999885458899999999999986543 79
Q ss_pred chhHHHHHHHHhhhh
Q 014522 387 SSDAMRIAQDIGKVW 401 (423)
Q Consensus 387 ~~~g~~~a~~i~~~l 401 (423)
+.+|+.+|.+|.+..
T Consensus 825 IaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 825 IADGRKAANAILSRE 839 (1012)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998654
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=250.69 Aligned_cols=276 Identities=21% Similarity=0.250 Sum_probs=186.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.++.. ++ .+.....+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 247 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IP---------RFRLPESVID 247 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CC---------CCCCCHHHHH
Confidence 45799999999999999999999999999999999998876431 11 1122334455
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+.++++++++++.+. .+ ++..+ ....||.||+|||++ .+..+.+||.+.. + ++.
T Consensus 248 ~~~~~l~~~Gv~i~~~~~v~-~d---------v~~~~--------~~~~~DaVilAtGa~-~~~~~~ipG~~~~-g-v~~ 306 (652)
T PRK12814 248 ADIAPLRAMGAEFRFNTVFG-RD---------ITLEE--------LQKEFDAVLLAVGAQ-KASKMGIPGEELP-G-VIS 306 (652)
T ss_pred HHHHHHHHcCCEEEeCCccc-Cc---------cCHHH--------HHhhcCEEEEEcCCC-CCCCCCCCCcCcC-C-cEe
Confidence 55566677888887777541 10 22222 123599999999952 2345567775432 2 111
Q ss_pred cCCC-----CCCCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHHHHHHhhccHHHH
Q 014522 180 ACDY-----KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253 (423)
Q Consensus 180 ~~~~-----~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (423)
..++ .......+++|+|||+|.+|+|+|..+.+.|. +|++++|++...+|.... ++
T Consensus 307 ~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~-----ei------------- 368 (652)
T PRK12814 307 GIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRA-----EI------------- 368 (652)
T ss_pred HHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HH-------------
Confidence 1111 11234568999999999999999999999986 599999987433332210 00
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce----------
Q 014522 254 DKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ---------- 319 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~---------- 319 (423)
.+. .+.+|+++.+ +.++.. ++
T Consensus 369 --------------------------------------------~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~ 403 (652)
T PRK12814 369 --------------------------------------------EEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQ 403 (652)
T ss_pred --------------------------------------------HHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEe
Confidence 000 1123333322 222211 00
Q ss_pred ----------EEEccCc--EecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC--
Q 014522 320 ----------AELINGE--KLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS-- 384 (423)
Q Consensus 320 ----------v~~~~g~--~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~-- 384 (423)
....+|+ ++++|.||+|+|+.|+. .+++..++ .+.+|++.+|..+++|+.|+|||+||+..+..
T Consensus 404 ~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~-~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v 482 (652)
T PRK12814 404 GEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDP-PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIA 482 (652)
T ss_pred cccCCCCCCcceecCCceEEEECCEEEECCCCcCCc-ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHH
Confidence 0111232 68999999999999997 67777777 55679999986678899999999999987544
Q ss_pred -CcchhHHHHHHHHhhhhHHH
Q 014522 385 -GASSDAMRIAQDIGKVWKEE 404 (423)
Q Consensus 385 -~a~~~g~~~a~~i~~~l~~~ 404 (423)
.|+.+|+.+|.+|...|...
T Consensus 483 ~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 483 INAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 79999999999999999754
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=3e-28 Score=239.72 Aligned_cols=286 Identities=23% Similarity=0.226 Sum_probs=188.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.. .++ .+....++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---------------gip---------~~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY---------------GIP---------DFKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee---------------cCC---------cccCCHHHHH
Confidence 4579999999999999999999999999999999988876532 111 1122234455
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+.+++++++.++.+.. + +... . ....||.||+|||+. .+..+.+||.+.. + ++.
T Consensus 198 ~~~~~~~~~gv~~~~~~~v~~-~---------~~~~-------~-~~~~~d~vvlAtGa~-~~~~l~ipG~~~~-g-V~~ 256 (471)
T PRK12810 198 RRIELMEAEGIEFRTNVEVGK-D---------ITAE-------E-LLAEYDAVFLGTGAY-KPRDLGIPGRDLD-G-VHF 256 (471)
T ss_pred HHHHHHHhCCcEEEeCCEECC-c---------CCHH-------H-HHhhCCEEEEecCCC-CCCcCCCCCccCC-C-cEE
Confidence 555667778999888876521 0 1111 1 235799999999952 3556677775431 2 111
Q ss_pred cCC-------------CCCCCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHHHHHH
Q 014522 180 ACD-------------YKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELATLMM 245 (423)
Q Consensus 180 ~~~-------------~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
..+ ........+++++|||+|++|+|+|..+.+.|. +|+.+.+.+ ++.... ....
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~------~~~~-- 325 (471)
T PRK12810 257 AMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRR------NKNN-- 325 (471)
T ss_pred HHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCcccc------cccc--
Confidence 100 011123467899999999999999999998886 688554433 111110 0000
Q ss_pred hhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccCh-hhhhhhhcCCeEEecC--ceEEeC-C-e-
Q 014522 246 KWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDI-GALKKIRSGHINVVPG--IKRISC-G-Q- 319 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~--i~~~~~-~-~- 319 (423)
. .+.+.. ...+.+.+.+|+++.+ +.++.. + .
T Consensus 326 -~------------------------------------------~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v 362 (471)
T PRK12810 326 -P------------------------------------------WPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKV 362 (471)
T ss_pred -C------------------------------------------CcccchHHHHHHHHHcCCeEEeccCceEEEccCCEE
Confidence 0 000000 0122234456776654 555542 1 1
Q ss_pred --EE-----EccC---------cEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc
Q 014522 320 --AE-----LING---------EKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG 382 (423)
Q Consensus 320 --v~-----~~~g---------~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 382 (423)
|. +.+| .++++|.||+|+|..|+...|++.+++ .+++|.+.++..+++|+.|+|||+||++.+
T Consensus 363 ~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g 442 (471)
T PRK12810 363 TGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRG 442 (471)
T ss_pred EEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCC
Confidence 21 1122 479999999999999986567888877 566888888745788999999999999976
Q ss_pred CC---CcchhHHHHHHHHhhhhHHH
Q 014522 383 LS---GASSDAMRIAQDIGKVWKEE 404 (423)
Q Consensus 383 ~~---~a~~~g~~~a~~i~~~l~~~ 404 (423)
.. .|+.+|+.+|.+|...|...
T Consensus 443 ~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 443 QSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcC
Confidence 43 69999999999999998753
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=6e-28 Score=253.98 Aligned_cols=279 Identities=20% Similarity=0.210 Sum_probs=188.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+||||||||++||..|+++|++|+|+|+.+.+||..+. .+ +.+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~---------------gi---------p~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY---------------GI---------PSFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec---------------cC---------CccCCCHHHHH
Confidence 4679999999999999999999999999999999888875432 11 22233455666
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+.++|++++.++.+ + .. ++..+. . ....||.||||||+ ..|+.+.+||.+.. + +++
T Consensus 485 ~~~~~l~~~Gv~~~~~~~v-g-------~~--~~~~~l-----~-~~~~yDaViIATGa-~~pr~l~IpG~~l~-g-V~~ 545 (1006)
T PRK12775 485 REVQRLVDIGVKIETNKVI-G-------KT--FTVPQL-----M-NDKGFDAVFLGVGA-GAPTFLGIPGEFAG-Q-VYS 545 (1006)
T ss_pred HHHHHHHHCCCEEEeCCcc-C-------Cc--cCHHHH-----h-hccCCCEEEEecCC-CCCCCCCCCCcCCC-C-cEE
Confidence 6667777889998888644 1 11 222220 0 13468999999995 24677788886431 1 222
Q ss_pred cCC--------------CCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCc-cEEEEecCceeecccccCCChHHHHHHH
Q 014522 180 ACD--------------YKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNAS-PSMVVRSSVHVLPREILGKSTFELATLM 244 (423)
Q Consensus 180 ~~~--------------~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-V~~v~r~~~~~~~~~~~~~~~~~~~~~~ 244 (423)
..+ ..+.....+++|+|||+|++|+|+|..+.++|.+ |+++.|+...-.|...
T Consensus 546 a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~------------ 613 (1006)
T PRK12775 546 ANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARI------------ 613 (1006)
T ss_pred HHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCH------------
Confidence 211 1122234689999999999999999999999875 8888887632111110
Q ss_pred HhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CCe-
Q 014522 245 MKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CGQ- 319 (423)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~- 319 (423)
...+.+++.+|+++.. +.++. +++
T Consensus 614 ---------------------------------------------------~e~~~a~eeGI~~~~~~~p~~i~~~~~G~ 642 (1006)
T PRK12775 614 ---------------------------------------------------EEIRHAKEEGIDFFFLHSPVEIYVDAEGS 642 (1006)
T ss_pred ---------------------------------------------------HHHHHHHhCCCEEEecCCcEEEEeCCCCe
Confidence 0011223345555533 33332 111
Q ss_pred ---EEEc-----------------cC--cEecccEEEEcCCCCCCCCCcccc-ccc-ccCCCCCCCCC----CCCCCCCC
Q 014522 320 ---AELI-----------------NG--EKLDIDAIVLATGYRSNVPSWLQE-SEF-FSENGFPKAPF----PHGWKGNA 371 (423)
Q Consensus 320 ---v~~~-----------------~g--~~~~~D~vi~a~G~~~~~~~ll~~-~~~-~~~~g~~~~~~----~~~~~~~~ 371 (423)
+.+. +| .++++|.||+|+|+.|+. .++.. .++ .+++|.+.++. .+++|+.|
T Consensus 643 v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~p 721 (1006)
T PRK12775 643 VRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP-IITQSTPGLALNKWGNIAADDGKLESTQSTNLP 721 (1006)
T ss_pred EEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh-hhhhccCCcccCCCCcEEeCCCccccCcCCCCC
Confidence 1111 22 269999999999999997 45443 355 46678887774 36789999
Q ss_pred ceEEEeeccccCC---CcchhHHHHHHHHhhhhHHHH
Q 014522 372 GLYAVGFTRRGLS---GASSDAMRIAQDIGKVWKEET 405 (423)
Q Consensus 372 ~vya~Gd~~~~~~---~a~~~g~~~a~~i~~~l~~~~ 405 (423)
+|||+||+..+.. .|+.+|+.+|.+|...|....
T Consensus 722 gVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 722 GVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999987654 799999999999999997644
No 64
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=5.6e-28 Score=246.63 Aligned_cols=277 Identities=19% Similarity=0.207 Sum_probs=186.0
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+||||||+|+++|..|++.|++|+|+|+.+.+||.+... ++ .+....++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip---------~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IP---------AFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CC---------CccCCHHHHH
Confidence 46799999999999999999999999999999999988875431 11 1122334555
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee-
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI- 178 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~- 178 (423)
...+.+.++|++++.++.|.. . ++... ....||.||+|||++ .+..+.++|.... +...
T Consensus 382 ~~~~~~~~~Gv~~~~~~~v~~--------~--i~~~~--------~~~~~DavilAtGa~-~~~~l~i~g~~~~-Gv~~a 441 (654)
T PRK12769 382 RRREIFSAMGIEFELNCEVGK--------D--ISLES--------LLEDYDAVFVGVGTY-RSMKAGLPNEDAP-GVYDA 441 (654)
T ss_pred HHHHHHHHCCeEEECCCEeCC--------c--CCHHH--------HHhcCCEEEEeCCCC-CCCCCCCCCCCCC-CeEEh
Confidence 556667788998888886620 0 22222 124699999999963 2334456664431 1110
Q ss_pred ------------ecCCCCC--CCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHHHH
Q 014522 179 ------------HACDYKS--GEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELATL 243 (423)
Q Consensus 179 ------------~~~~~~~--~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~ 243 (423)
....... .....+++++|||+|.+|+|+|..+.++|. +|++++|++...+|....
T Consensus 442 ~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~---------- 511 (654)
T PRK12769 442 LPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK---------- 511 (654)
T ss_pred HHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH----------
Confidence 0000000 112457899999999999999999999986 699999886322222210
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CC-
Q 014522 244 MMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CG- 318 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~- 318 (423)
..+.+++.+|+++.+ +.++. ++
T Consensus 512 -----------------------------------------------------e~~~~~~~Gv~~~~~~~~~~i~~~~~g 538 (654)
T PRK12769 512 -----------------------------------------------------EVKNAREEGANFEFNVQPVALELNEQG 538 (654)
T ss_pred -----------------------------------------------------HHHHHHHcCCeEEeccCcEEEEECCCC
Confidence 111223344554433 33332 11
Q ss_pred ---eEEE---------c---------cCc--EecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCC---CCCCCCC
Q 014522 319 ---QAEL---------I---------NGE--KLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFP---HGWKGNA 371 (423)
Q Consensus 319 ---~v~~---------~---------~g~--~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~---~~~~~~~ 371 (423)
+|.+ . .|+ ++++|.||+|+|+.|+...+++..++ .+++|.++++.. +++|+.|
T Consensus 539 ~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~ 618 (654)
T PRK12769 539 HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNP 618 (654)
T ss_pred eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCC
Confidence 1121 0 122 69999999999999996567888777 567898887732 4789999
Q ss_pred ceEEEeeccccCC---CcchhHHHHHHHHhhhhHH
Q 014522 372 GLYAVGFTRRGLS---GASSDAMRIAQDIGKVWKE 403 (423)
Q Consensus 372 ~vya~Gd~~~~~~---~a~~~g~~~a~~i~~~l~~ 403 (423)
+|||+||+..+.. .|+.+|+.+|.+|..+|..
T Consensus 619 gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 619 KIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999998754 6999999999999988753
No 65
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.2e-28 Score=211.75 Aligned_cols=329 Identities=18% Similarity=0.182 Sum_probs=200.4
Q ss_pred hccccccCCeEEECCChHHHHHHHHHHHcCCCEEEEec--CCCCCccccccc-CCceeecCCCcccc-----------CC
Q 014522 15 SRRCIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLER--AECIASLWQKRT-YDRLNLHLPKQFCQ-----------LP 80 (423)
Q Consensus 15 ~~~~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~--~~~~gg~~~~~~-~~~~~~~~~~~~~~-----------~~ 80 (423)
...++..||++|||||.+|++||.+++..|.+|.++|- ....|..|-.+. +-.+.+ +|...+. ..
T Consensus 13 ~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGC-IPKKLMHQAallG~al~da~ 91 (503)
T KOG4716|consen 13 RLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGC-IPKKLMHQAALLGEALHDAR 91 (503)
T ss_pred hhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeeccc-ccHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999999993 223455564420 000000 1111100 00
Q ss_pred --CCCCCCCCCCCCCHHHHHHHHHHHHHHcCCc--e-eccceEEEEEEe-CCCCeEEEEEcccCCCCCceEEEEeCEEEE
Q 014522 81 --KLQFPEDFPEYPTKRQFIQYLESYAEKFEIN--P-RFNECVQSARYD-ETSGLWRVKTASSAGSTKTEFEYICRWLVV 154 (423)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~vvi 154 (423)
++..++. .--..-+.+.+..++..++.+-- + ..+.+|+-++.- ...+..++...+..+ ..+.++|+.+||
T Consensus 92 kyGW~~~e~-~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~g---k~~~~ta~~fvI 167 (503)
T KOG4716|consen 92 KYGWNVDEQ-KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKG---KERFLTAENFVI 167 (503)
T ss_pred hhCCCCccc-cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCC---ceEEeecceEEE
Confidence 0100110 00112334444444444433211 1 223334433321 111223344444333 457899999999
Q ss_pred ccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccC
Q 014522 155 ATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILG 234 (423)
Q Consensus 155 AtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~ 234 (423)
||| .+|+.|++||..++ .-+++.+....+.+.+.+|||+|++|+|+|-+|+..|.+|+++.|+-. |
T Consensus 168 atG--~RPrYp~IpG~~Ey----~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~--L------ 233 (503)
T KOG4716|consen 168 ATG--LRPRYPDIPGAKEY----GITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL--L------ 233 (503)
T ss_pred Eec--CCCCCCCCCCceee----eecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEee--c------
Confidence 999 99999999997664 233444444667788999999999999999999999999999999861 1
Q ss_pred CChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecCceE
Q 014522 235 KSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPGIKR 314 (423)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~ 314 (423)
+-|.+.|+......|+..|+++...- .| ...+.+.++.+.+...
T Consensus 234 -------------------rGFDqdmae~v~~~m~~~Gikf~~~~----------vp----~~Veq~~~g~l~v~~k--- 277 (503)
T KOG4716|consen 234 -------------------RGFDQDMAELVAEHMEERGIKFLRKT----------VP----ERVEQIDDGKLRVFYK--- 277 (503)
T ss_pred -------------------ccccHHHHHHHHHHHHHhCCceeecc----------cc----eeeeeccCCcEEEEee---
Confidence 12333444444445555555431110 00 0111122222222110
Q ss_pred EeCCeEEEccCcEecccEEEEcCCCCCCCCCc-cccccccc--CCCCCCCCCCCCCCCCCceEEEeecccc----CCCcc
Q 014522 315 ISCGQAELINGEKLDIDAIVLATGYRSNVPSW-LQESEFFS--ENGFPKAPFPHGWKGNAGLYAVGFTRRG----LSGAS 387 (423)
Q Consensus 315 ~~~~~v~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~~~--~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~ 387 (423)
......+-+-++|.|+||+|+.+.+..+ |+..|+.. ..|.+.++ ...+|+.|+|||+||...+ .+.|+
T Consensus 278 ----~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAI 352 (503)
T KOG4716|consen 278 ----NTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAI 352 (503)
T ss_pred ----cccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhh
Confidence 0011122256899999999999998777 78888844 47788777 5788999999999999875 33799
Q ss_pred hhHHHHHHHHhhhhHH
Q 014522 388 SDAMRIAQDIGKVWKE 403 (423)
Q Consensus 388 ~~g~~~a~~i~~~l~~ 403 (423)
+.|+.+|+++.+-...
T Consensus 353 qsGrlLa~Rlf~gs~q 368 (503)
T KOG4716|consen 353 QSGRLLARRLFAGSTQ 368 (503)
T ss_pred hhchHHHHHHhcCcce
Confidence 9999999999775443
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=2.1e-27 Score=232.87 Aligned_cols=274 Identities=20% Similarity=0.238 Sum_probs=185.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||++|+++|..|+++|++|+++|+.+.+||.++. .++ .+....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~---------------gip---------~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF---------------GIP---------SFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee---------------cCc---------cccCCHHHHH
Confidence 4679999999999999999999999999999999988886542 111 1122345566
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC-cCCCCCCCCCCCceee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER-VMPDIEGLADFGGEVI 178 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~-~~p~~~g~~~~~~~~~ 178 (423)
...+.+.++|++++.++.|.. . +...+ ....||.||+|||+ .+ ..+.+||.+.. + ++
T Consensus 196 ~~~~~~~~~Gv~~~~~~~v~~--------~--~~~~~--------~~~~~D~vilAtGa--~~~~~~~i~g~~~~-g-V~ 253 (467)
T TIGR01318 196 RRREIFTAMGIEFHLNCEVGR--------D--ISLDD--------LLEDYDAVFLGVGT--YRSMRGGLPGEDAP-G-VL 253 (467)
T ss_pred HHHHHHHHCCCEEECCCEeCC--------c--cCHHH--------HHhcCCEEEEEeCC--CCCCcCCCCCcCCC-C-cE
Confidence 666777888999888887621 1 22222 23579999999995 43 23456775432 1 11
Q ss_pred ec-------------C-CCC--CCCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHH
Q 014522 179 HA-------------C-DYK--SGEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELA 241 (423)
Q Consensus 179 ~~-------------~-~~~--~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~ 241 (423)
+. . ... ......+++++|||+|.+|+|+|..+.+.|. +|++++|++...+|....
T Consensus 254 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~-------- 325 (467)
T TIGR01318 254 QALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR-------- 325 (467)
T ss_pred EHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH--------
Confidence 10 0 000 0112357899999999999999999999985 699999987333222210
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--
Q 014522 242 TLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC-- 317 (423)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~-- 317 (423)
..+.+.+.+|+++.+ +.++..
T Consensus 326 -------------------------------------------------------e~~~~~~~GV~~~~~~~~~~i~~~~ 350 (467)
T TIGR01318 326 -------------------------------------------------------EVANAREEGVEFLFNVQPVYIECDE 350 (467)
T ss_pred -------------------------------------------------------HHHHHHhcCCEEEecCCcEEEEECC
Confidence 011122344555443 333321
Q ss_pred Ce----EEE--------------------ccCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCC---CCCCCC
Q 014522 318 GQ----AEL--------------------INGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPF---PHGWKG 369 (423)
Q Consensus 318 ~~----v~~--------------------~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~---~~~~~~ 369 (423)
++ +++ .+..++++|.||+|+|+.|+...+++..++ .+++|++.++. .+++|+
T Consensus 351 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~ 430 (467)
T TIGR01318 351 DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTT 430 (467)
T ss_pred CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCC
Confidence 11 111 112378999999999999986567777776 56678888773 356789
Q ss_pred CCceEEEeeccccCC---CcchhHHHHHHHHhhhhH
Q 014522 370 NAGLYAVGFTRRGLS---GASSDAMRIAQDIGKVWK 402 (423)
Q Consensus 370 ~~~vya~Gd~~~~~~---~a~~~g~~~a~~i~~~l~ 402 (423)
.|+||++||+..+.. .|+.+|+.+|.+|...|.
T Consensus 431 ~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 431 NPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999987654 699999999999988763
No 67
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=2.9e-28 Score=214.06 Aligned_cols=190 Identities=37% Similarity=0.659 Sum_probs=135.5
Q ss_pred EEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCcccccccCCceeecCCCcc---ccCCCCCCC--------CCCCCCC
Q 014522 25 VIVGAGPSGLATAACLRDQGVP-FVMLERAECIASLWQKRTYDRLNLHLPKQF---CQLPKLQFP--------EDFPEYP 92 (423)
Q Consensus 25 vIIGaG~aGl~~A~~L~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~ 92 (423)
+|||||++|+++|..|.++|.+ ++|+|+.+.+||.|... ++...+..+..+ +.++.+... .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 99999999999999852 222222222211 122211100 0124567
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLAD 172 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~ 172 (423)
+..++.+|+++++++++++++++++|+++...+ +.|.|++.+ + +++++|+||+|||..+.|..|.++| ..
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~------~-~~~~a~~VVlAtG~~~~p~~p~~~g-~~ 149 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRD------G-RTIRADRVVLATGHYSHPRIPDIPG-SA 149 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETT------S--EEEEEEEEE---SSCSB---S-TT-GG
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEe------c-ceeeeeeEEEeeeccCCCCcccccc-cc
Confidence 899999999999999999999999999999987 669999987 5 6899999999999888999999988 11
Q ss_pred CCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCce
Q 014522 173 FGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVH 226 (423)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~ 226 (423)
+ ...+|+.++.+...+.+++|+|||+|.+|+|++..|++.|.+|++++|++.|
T Consensus 150 ~-~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 150 F-RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp C-SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred c-cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 2 2668888887777888999999999999999999999999999999999854
No 68
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=1.5e-27 Score=213.24 Aligned_cols=306 Identities=16% Similarity=0.158 Sum_probs=196.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc-cCCceeecCCCccccCCCC-CCCC---C-CCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR-TYDRLNLHLPKQFCQLPKL-QFPE---D-FPEYPT 93 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~~ 93 (423)
..+||+|||+||+|..||...++.|++.+++|++...||++-.- +-|.-.+...+.+|..... .+.. + .+.-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 57999999999999999999999999999999999999987552 2222211111221111111 0000 0 001112
Q ss_pred HHHHHHH-----------HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 94 KRQFIQY-----------LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 94 ~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
.+.+++. +..+.++.++.+..+. -.-.+... |.....++ +...++++++|+||| +.
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~-----gsf~~p~~--V~v~k~dg---~~~ii~aKnIiiATG--Se- 184 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF-----GSFLDPNK--VSVKKIDG---EDQIIKAKNIIIATG--SE- 184 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee-----EeecCCce--EEEeccCC---CceEEeeeeEEEEeC--Cc-
Confidence 2333333 3333344444422211 11111133 44443332 447899999999999 53
Q ss_pred cCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHH
Q 014522 163 VMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELAT 242 (423)
Q Consensus 163 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~ 242 (423)
.+.+||+.- ++..+.+++-.-....-+++++|||+|.+|+|+..-..++|.+||++.-.+ .+.+..+. +++
T Consensus 185 -V~~~PGI~I-DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~-----Eis- 255 (506)
T KOG1335|consen 185 -VTPFPGITI-DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDG-----EIS- 255 (506)
T ss_pred -cCCCCCeEe-cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCH-----HHH-
Confidence 223556543 233455555555566778999999999999999999999999999998777 44444333 333
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe-
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ- 319 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~- 319 (423)
..+...+++.++.+..+ +...+.++
T Consensus 256 ----------------------------------------------------k~~qr~L~kQgikF~l~tkv~~a~~~~d 283 (506)
T KOG1335|consen 256 ----------------------------------------------------KAFQRVLQKQGIKFKLGTKVTSATRNGD 283 (506)
T ss_pred ----------------------------------------------------HHHHHHHHhcCceeEeccEEEEeeccCC
Confidence 33344455566776655 44333321
Q ss_pred ----EEEc---cC--cEecccEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---C
Q 014522 320 ----AELI---NG--EKLDIDAIVLATGYRSNVPSW-LQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---G 385 (423)
Q Consensus 320 ----v~~~---~g--~~~~~D~vi~a~G~~~~~~~l-l~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~ 385 (423)
|++. ++ ++++||++++++|++|-+..| ++..|+ .+.+|++.++ ...+|..|+||++||++.+++ -
T Consensus 284 g~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhk 362 (506)
T KOG1335|consen 284 GPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHK 362 (506)
T ss_pred CceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhh
Confidence 3332 22 379999999999999998777 778888 6778999888 577899999999999999877 4
Q ss_pred cchhHHHHHHHHhhh
Q 014522 386 ASSDAMRIAQDIGKV 400 (423)
Q Consensus 386 a~~~g~~~a~~i~~~ 400 (423)
|-.||..+.+.|.+.
T Consensus 363 AeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 363 AEEEGIAAVEGIAGG 377 (506)
T ss_pred hhhhchhheeeeccc
Confidence 556676666666543
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=9.3e-27 Score=236.64 Aligned_cols=278 Identities=18% Similarity=0.221 Sum_probs=186.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|... ++.+ .....+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~~---------~l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPPF---------KLDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCcc---------cCCHHHHH
Confidence 46899999999999999999999999999999999999876542 1111 12244555
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee-
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI- 178 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~- 178 (423)
...+.+.++|+++++++.+.. . ++..+ ....||.||+|||++ .+..+.+||.+. .+...
T Consensus 365 ~~~~~~~~~Gv~~~~~~~v~~--------~--~~~~~--------l~~~~DaV~latGa~-~~~~~~i~g~~~-~gv~~a 424 (639)
T PRK12809 365 QRREIFTAMGIDFHLNCEIGR--------D--ITFSD--------LTSEYDAVFIGVGTY-GMMRADLPHEDA-PGVIQA 424 (639)
T ss_pred HHHHHHHHCCeEEEcCCccCC--------c--CCHHH--------HHhcCCEEEEeCCCC-CCCCCCCCCCcc-CCcEeH
Confidence 556677788999888886621 0 22222 234689999999963 233445666543 12110
Q ss_pred ---e------cCCCC-----CCCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHHHH
Q 014522 179 ---H------ACDYK-----SGEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELATL 243 (423)
Q Consensus 179 ---~------~~~~~-----~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~ 243 (423)
. ..... ......+++++|+|+|.+|+++|..+.++|. +|++++|++...+|.... ++
T Consensus 425 ~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~-----e~--- 496 (639)
T PRK12809 425 LPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK-----EV--- 496 (639)
T ss_pred HHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HH---
Confidence 0 00000 0122357899999999999999999999985 799999986322221110 00
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CCe
Q 014522 244 MMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CGQ 319 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~ 319 (423)
...++.+|++++. +.++. +++
T Consensus 497 -------------------------------------------------------~~a~~eGv~~~~~~~~~~i~~~~~g 521 (639)
T PRK12809 497 -------------------------------------------------------VNAREEGVEFQFNVQPQYIACDEDG 521 (639)
T ss_pred -------------------------------------------------------HHHHHcCCeEEeccCCEEEEECCCC
Confidence 0112234444332 33332 111
Q ss_pred ----EEE--------------------ccCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCC---CCCCCCCC
Q 014522 320 ----AEL--------------------INGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPF---PHGWKGNA 371 (423)
Q Consensus 320 ----v~~--------------------~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~---~~~~~~~~ 371 (423)
+.+ .+..++++|.||+|+|+.|+...+++.+++ .+++|.+.++. .+++|+.|
T Consensus 522 ~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~ 601 (639)
T PRK12809 522 RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLK 601 (639)
T ss_pred eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCC
Confidence 111 112378999999999999986567777777 56688887763 24789999
Q ss_pred ceEEEeeccccCC---CcchhHHHHHHHHhhhhHHH
Q 014522 372 GLYAVGFTRRGLS---GASSDAMRIAQDIGKVWKEE 404 (423)
Q Consensus 372 ~vya~Gd~~~~~~---~a~~~g~~~a~~i~~~l~~~ 404 (423)
+|||+||+..+.. .|+.+|+.+|.+|...|...
T Consensus 602 gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 602 KVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999997654 69999999999999988653
No 70
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.95 E-value=2.8e-27 Score=218.97 Aligned_cols=264 Identities=22% Similarity=0.279 Sum_probs=193.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV--PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
...++|||+|++|..|+..+++.|. +++++-+...+. |+..++.... .+ ....+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~Ls~~~-~~---------------~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARLSKFL-LT---------------VGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhcccce-ee---------------cccccc
Confidence 5679999999999999999999985 888887654332 3222221000 00 001111
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
....++.+.+++++++++.|+.++... +. +.+.+ | +++.|++++|||| +.+..|++||.... .+.
T Consensus 131 ~r~~e~Yke~gIe~~~~t~v~~~D~~~--K~--l~~~~------G-e~~kys~LilATG--s~~~~l~~pG~~~~--nv~ 195 (478)
T KOG1336|consen 131 KRTPEFYKEKGIELILGTSVVKADLAS--KT--LVLGN------G-ETLKYSKLIIATG--SSAKTLDIPGVELK--NVF 195 (478)
T ss_pred ccChhhHhhcCceEEEcceeEEeeccc--cE--EEeCC------C-ceeecceEEEeec--CccccCCCCCcccc--cee
Confidence 111234566799999999999999876 55 77776 5 8999999999999 78889999998732 222
Q ss_pred ecCCCCC-----CCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHH
Q 014522 179 HACDYKS-----GEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV 253 (423)
Q Consensus 179 ~~~~~~~-----~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (423)
...+..+ ........++++|+|..|+|++..|...+.+||++++.+ +++|+..
T Consensus 196 ~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf--------------------- 253 (478)
T KOG1336|consen 196 YLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLF--------------------- 253 (478)
T ss_pred eeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhh---------------------
Confidence 2222111 122236789999999999999999999999999999999 6655422
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC------eEEEccC
Q 014522 254 DKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG------QAELING 325 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~------~v~~~~g 325 (423)
.+.+...+..++++.+|+++.+ +..++.+ .|.+.||
T Consensus 254 ------------------------------------~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg 297 (478)
T KOG1336|consen 254 ------------------------------------GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG 297 (478)
T ss_pred ------------------------------------hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC
Confidence 2233334667778889999866 6666643 2788999
Q ss_pred cEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccC
Q 014522 326 EKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGL 383 (423)
Q Consensus 326 ~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~ 383 (423)
++++||+|++.+|.+|++ .+++. +. .++.|.+.++ ..++|+.|+|||+||++..+
T Consensus 298 ~~l~adlvv~GiG~~p~t-~~~~~-g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~fp 353 (478)
T KOG1336|consen 298 KTLEADLVVVGIGIKPNT-SFLEK-GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATFP 353 (478)
T ss_pred CEeccCeEEEeecccccc-ccccc-cceecccCCEeeh-hceeeccCCcccccceeecc
Confidence 999999999999999999 55554 44 6789999999 68999999999999998653
No 71
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.94 E-value=2.3e-26 Score=224.67 Aligned_cols=273 Identities=19% Similarity=0.278 Sum_probs=185.5
Q ss_pred HHHHHHHHcC--CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHHcCC
Q 014522 35 ATAACLRDQG--VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEY-PTKRQFIQY-LESYAEKFEI 110 (423)
Q Consensus 35 ~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 110 (423)
+||..|++++ .+|+|||+++..+- .. +.++.+ ..+. ...+++..+ ..++..++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~-------~~---------~~l~~~-----~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF-------AN---------CGLPYV-----IGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE-------Ec---------CCCCeE-----eccccCCHHHcccCCHHHHHHhcCC
Confidence 4788888874 68999999875420 00 001100 0111 112333333 2345577799
Q ss_pred ceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEE--eCEEEEccCCCCCCcCCCCCCCCCCCceeeecCCCCCC--
Q 014522 111 NPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYI--CRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSG-- 186 (423)
Q Consensus 111 ~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~--~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~-- 186 (423)
+++.+++|++++... ..+.+.... +...+. ||+||+||| +.|..|.+||++.. .++......+.
T Consensus 60 ~~~~~~~V~~id~~~--~~v~~~~~~------~~~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--~v~~~~~~~~~~~ 127 (427)
T TIGR03385 60 DVKTNHEVIEVNDER--QTVVVRNNK------TNETYEESYDYLILSPG--ASPIVPNIEGINLD--IVFTLRNLEDTDA 127 (427)
T ss_pred eEEecCEEEEEECCC--CEEEEEECC------CCCEEecCCCEEEECCC--CCCCCCCCCCcCCC--CEEEECCHHHHHH
Confidence 988899999998755 554343321 114677 999999999 78888888886521 12222111100
Q ss_pred -----CCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHH
Q 014522 187 -----EKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILA 261 (423)
Q Consensus 187 -----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (423)
....+++++|||+|.+|+|+|..|++.|.+|+++.+.+..+.+....
T Consensus 128 ~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~---------------------------- 179 (427)
T TIGR03385 128 IKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDE---------------------------- 179 (427)
T ss_pred HHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCH----------------------------
Confidence 01346899999999999999999999999999999987321121110
Q ss_pred HHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe--EEEccCcEecccEEEEcC
Q 014522 262 WFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ--AELINGEKLDIDAIVLAT 337 (423)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~--v~~~~g~~~~~D~vi~a~ 337 (423)
.....+.+.+++.+|+++.+ +.++..++ +.+.+|+++++|.||+|+
T Consensus 180 ------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~ 229 (427)
T TIGR03385 180 ------------------------------EMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILAT 229 (427)
T ss_pred ------------------------------HHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECC
Confidence 11111234455678888876 77777554 267788999999999999
Q ss_pred CCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc-------------CCCcchhHHHHHHHHhhh
Q 014522 338 GYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRG-------------LSGASSDAMRIAQDIGKV 400 (423)
Q Consensus 338 G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------------~~~a~~~g~~~a~~i~~~ 400 (423)
|++|+. .+++.+++ .+++|++.+| ++++|+.|+|||+|||+.. ...|.+||+++|+||.+.
T Consensus 230 G~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 230 GIKPNS-ELAKDSGLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred CccCCH-HHHHhcCcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 999997 67788777 4567999888 5688999999999999852 126889999999999764
No 72
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-26 Score=200.78 Aligned_cols=289 Identities=18% Similarity=0.277 Sum_probs=213.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..|||+||||||||.++|...+|+|++.=++-. .+||.-.. .+. +-.+... .+.....+..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvld----T~~------IENfIsv-------~~teGpkl~~ 270 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLD----TMG------IENFISV-------PETEGPKLAA 270 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeecc----ccc------hhheecc-------ccccchHHHH
Confidence 479999999999999999999999998776643 44543211 000 0011111 1236677888
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCC-CeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETS-GLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
.+....++|.+++.-..+.+.+.+.... +..+|++.+ | -.++++.+|+||| ++.+-..+||.+++...-+
T Consensus 271 ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n------G-avLkaktvIlstG--ArWRn~nvPGE~e~rnKGV 341 (520)
T COG3634 271 ALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN------G-AVLKARTVILATG--ARWRNMNVPGEDEYRNKGV 341 (520)
T ss_pred HHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC------C-ceeccceEEEecC--cchhcCCCCchHHHhhCCe
Confidence 8888899999998777777777764332 467788887 5 6899999999999 5555557899998887778
Q ss_pred ecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHH
Q 014522 179 HACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILL 258 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (423)
..|..++...+++|+|+|||+|++|+|.|..|+.....||++.-.+. + -.+..+
T Consensus 342 ayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e-L------------------------kAD~VL- 395 (520)
T COG3634 342 AYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-L------------------------KADAVL- 395 (520)
T ss_pred eeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh-h------------------------hhHHHH-
Confidence 88999999999999999999999999999999999888999866551 1 011111
Q ss_pred HHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhh-cCCeEEecC--ceEEeCCe-----EEEc---cCc-
Q 014522 259 ILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIR-SGHINVVPG--IKRISCGQ-----AELI---NGE- 326 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~--i~~~~~~~-----v~~~---~g~- 326 (423)
.+.++ -.+++++++ -+++..++ +... +|+
T Consensus 396 ---------------------------------------q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 396 ---------------------------------------QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred ---------------------------------------HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence 11111 247777776 45666542 3332 333
Q ss_pred -EecccEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC----CCcchhHHHHHHHHhhhh
Q 014522 327 -KLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRGL----SGASSDAMRIAQDIGKVW 401 (423)
Q Consensus 327 -~~~~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~----~~a~~~g~~~a~~i~~~l 401 (423)
.++-+-|++-+|..||+ .|+++.--.+++|.+++| ....|+.|||||+|||+..+ ..|+..|..++-....+|
T Consensus 437 ~~l~LeGvFVqIGL~PNT-~WLkg~vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 437 HHLELEGVFVQIGLLPNT-EWLKGAVELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred eEEEeeeeEEEEecccCh-hHhhchhhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhh
Confidence 46777899999999999 999998337889999999 68899999999999998643 368888888887777665
Q ss_pred HH
Q 014522 402 KE 403 (423)
Q Consensus 402 ~~ 403 (423)
-+
T Consensus 515 IR 516 (520)
T COG3634 515 IR 516 (520)
T ss_pred ee
Confidence 44
No 73
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.94 E-value=9e-26 Score=222.19 Aligned_cols=306 Identities=21% Similarity=0.192 Sum_probs=179.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.... .+ +.+.....+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---------------gi---------p~~~~~~~~~~ 197 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---------------GI---------PNMKLDKAIVD 197 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---------------cC---------CCccCCHHHHH
Confidence 3579999999999999999999999999999999888765422 11 11112233455
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+++.+++++.++.|. .+ +... + ....||.||+|||+. .+..+.+||.+. .+ +..
T Consensus 198 ~~~~~~~~~Gv~~~~~~~v~-~~---------~~~~-------~-~~~~~d~VilAtGa~-~~~~l~i~G~~~-~g-V~~ 256 (485)
T TIGR01317 198 RRIDLLSAEGIDFVTNTEIG-VD---------ISAD-------E-LKEQFDAVVLAGGAT-KPRDLPIPGREL-KG-IHY 256 (485)
T ss_pred HHHHHHHhCCCEEECCCEeC-Cc---------cCHH-------H-HHhhCCEEEEccCCC-CCCcCCCCCcCC-CC-cEe
Confidence 55566677899988888763 10 1111 1 245799999999952 366677888643 22 111
Q ss_pred cCC--------C-------CCCCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHHHH
Q 014522 180 ACD--------Y-------KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELATL 243 (423)
Q Consensus 180 ~~~--------~-------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~ 243 (423)
..+ . .......+++|+|||+|++|+|+|..+.++|. +|+++.+.+. .+..... ..
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~-~~~~~~~--------~~ 327 (485)
T TIGR01317 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK-PPEARAK--------DN 327 (485)
T ss_pred HHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC-Chhhccc--------cc
Confidence 100 0 01122467899999999999999988888875 6999988773 2111000 00
Q ss_pred HHhhccHHH-HHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhc--CCeEEecCceEEe----
Q 014522 244 MMKWLPLWL-VDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRS--GHINVVPGIKRIS---- 316 (423)
Q Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~i~~~~---- 316 (423)
++..++... .+..... -....++.. . .+.....+...+ +.+.-+. +.++.
T Consensus 328 ~~~~~~~~~e~~~a~~e-------~~~~~gv~~-----~----------~~~~~~~~i~~~~~g~v~~v~-~~~~~~~~~ 384 (485)
T TIGR01317 328 PWPEWPRVYRVDYAHEE-------AAAHYGRDP-----R----------EYSILTKEFIGDDEGKVTALR-TVRVEWKKS 384 (485)
T ss_pred CCCccchhhhhHHHHHh-------hhhhcCccc-----e----------EEecCcEEEEEcCCCeEEEEE-EEEEEeccC
Confidence 000000000 0000000 000000000 0 000000000000 0111000 00000
Q ss_pred CCe---EEEc--cCcEecccEEEEcCCCC-CCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Cc
Q 014522 317 CGQ---AELI--NGEKLDIDAIVLATGYR-SNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GA 386 (423)
Q Consensus 317 ~~~---v~~~--~g~~~~~D~vi~a~G~~-~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a 386 (423)
+++ .... +..++++|.||+|+|+. |+. .+++.+++ .+++|.++++..+++|+.|+|||+||++.+.. .|
T Consensus 385 ~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~A 463 (485)
T TIGR01317 385 QDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWA 463 (485)
T ss_pred CCCCccceecCCceEEEECCEEEEccCcCCCcc-ccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHH
Confidence 011 0111 12379999999999997 666 67887777 46688885544678999999999999987543 79
Q ss_pred chhHHHHHHHHhhhhHH
Q 014522 387 SSDAMRIAQDIGKVWKE 403 (423)
Q Consensus 387 ~~~g~~~a~~i~~~l~~ 403 (423)
+.+|+.+|.+|..+|..
T Consensus 464 v~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 464 INEGRKAAAAVDRYLMG 480 (485)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999865
No 74
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=5e-26 Score=231.06 Aligned_cols=274 Identities=17% Similarity=0.188 Sum_probs=175.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||+|++|+++|..|.++|++|+|+|+.+..||.+.. .++ .+....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~---------------~i~---------~~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY---------------GIP---------SYRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee---------------cCC---------cccCCHHHHH
Confidence 4678999999999999999999999999999999888875432 111 1112233444
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeee
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIH 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~ 179 (423)
...+.+++++++++.++.|.. + +.... ....||+||+|||+ ..++.+.+||.+.. + ++.
T Consensus 338 ~~~~~~~~~gv~~~~~~~v~~----~------~~~~~--------~~~~yD~vilAtGa-~~~r~l~i~G~~~~-g-v~~ 396 (604)
T PRK13984 338 KDIAFIEALGVKIHLNTRVGK----D------IPLEE--------LREKHDAVFLSTGF-TLGRSTRIPGTDHP-D-VIQ 396 (604)
T ss_pred HHHHHHHHCCcEEECCCEeCC----c------CCHHH--------HHhcCCEEEEEcCc-CCCccCCCCCcCCc-C-eEe
Confidence 445567778998888887731 0 11111 23579999999995 23566678886432 1 111
Q ss_pred cCCCCC----------CCCCCCCEEEEECCCCCHHHHHHHHhccCC------ccEEEEecC-ceeecccccCCChHHHHH
Q 014522 180 ACDYKS----------GEKYKGKKVLVVGCGNSGMELSLDLSNHNA------SPSMVVRSS-VHVLPREILGKSTFELAT 242 (423)
Q Consensus 180 ~~~~~~----------~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~------~V~~v~r~~-~~~~~~~~~~~~~~~~~~ 242 (423)
..++.. .....+++++|||+|.+|+|+|..+++++. +|+++.... ...+|.... +
T Consensus 397 a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~-----e--- 468 (604)
T PRK13984 397 ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME-----E--- 468 (604)
T ss_pred HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH-----H---
Confidence 111110 112246899999999999999999998753 677764321 111111100 0
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--C
Q 014522 243 LMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--G 318 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~ 318 (423)
+.+ ..+.+|+++.+ +.++.. +
T Consensus 469 ------------------------------------------------------~~~-~~~~GV~i~~~~~~~~i~~~~g 493 (604)
T PRK13984 469 ------------------------------------------------------IEE-GLEEGVVIYPGWGPMEVVIEND 493 (604)
T ss_pred ------------------------------------------------------HHH-HHHcCCEEEeCCCCEEEEccCC
Confidence 000 11123333322 212110 0
Q ss_pred ---eEEE-------------------ccCcEecccEEEEcCCCCCCCCCccccc--ccccCCCCCCCCCCCCCCCCCceE
Q 014522 319 ---QAEL-------------------INGEKLDIDAIVLATGYRSNVPSWLQES--EFFSENGFPKAPFPHGWKGNAGLY 374 (423)
Q Consensus 319 ---~v~~-------------------~~g~~~~~D~vi~a~G~~~~~~~ll~~~--~~~~~~g~~~~~~~~~~~~~~~vy 374 (423)
++.+ .++.++++|.||+|+|+.|++..+...+ ++..++|.+++| .+++|+.|+||
T Consensus 494 ~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd-~~~~Ts~~gVf 572 (604)
T PRK13984 494 KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTN-EYGQTSIPWLF 572 (604)
T ss_pred EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeC-CCCccCCCCEE
Confidence 0111 1234799999999999999974333333 343357888888 57889999999
Q ss_pred EEeeccccCC--CcchhHHHHHHHHhhhhH
Q 014522 375 AVGFTRRGLS--GASSDAMRIAQDIGKVWK 402 (423)
Q Consensus 375 a~Gd~~~~~~--~a~~~g~~~a~~i~~~l~ 402 (423)
|+||++.+.. .|+.+|+.+|.+|..+|.
T Consensus 573 AaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 573 AGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred EecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997643 799999999999998875
No 75
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=9.3e-25 Score=211.72 Aligned_cols=311 Identities=19% Similarity=0.169 Sum_probs=180.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHH--cCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRD--QGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQF 97 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (423)
..++|+||||||||++||..|++ .|++|+|||+.+.+||+.+.... +.++....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHH
Confidence 46789999999999999999997 69999999999999887654211 223444556
Q ss_pred HHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCcee
Q 014522 98 IQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177 (423)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~ 177 (423)
...+.+.+...+++++.+..+. .. ++..+ -...||.||+|||+. .+..+.+||.+.. + +
T Consensus 82 ~~~~~~~~~~~~v~~~~nv~vg--------~d--vtl~~--------L~~~yDaVIlAtGa~-~~~~l~IpG~d~~-g-V 140 (491)
T PLN02852 82 TNQFSRVATDDRVSFFGNVTLG--------RD--VSLSE--------LRDLYHVVVLAYGAE-SDRRLGIPGEDLP-G-V 140 (491)
T ss_pred HHHHHHHHHHCCeEEEcCEEEC--------cc--ccHHH--------HhhhCCEEEEecCCC-CCCCCCCCCCCCC-C-e
Confidence 6666777777777766665441 11 34333 234799999999953 2355677875432 1 1
Q ss_pred eecCCC------------CCCCCCCCCEEEEECCCCCHHHHHHHHhcc--------------------CC-ccEEEEecC
Q 014522 178 IHACDY------------KSGEKYKGKKVLVVGCGNSGMELSLDLSNH--------------------NA-SPSMVVRSS 224 (423)
Q Consensus 178 ~~~~~~------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------------g~-~V~~v~r~~ 224 (423)
+...++ .......+++++|||+|++|+|+|..|++. +. +|+++.|+.
T Consensus 141 ~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg 220 (491)
T PLN02852 141 LSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRG 220 (491)
T ss_pred EEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCC
Confidence 111111 001123578999999999999999999875 54 599999998
Q ss_pred ceeecccccCCChHHHHHHH--Hhh----ccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhh
Q 014522 225 VHVLPREILGKSTFELATLM--MKW----LPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGAL 298 (423)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (423)
..-.+... .++.... ... -|..+.. .. . + .+.....++ .....+.+.
T Consensus 221 ~~~~~ft~-----~Elrel~~l~~~~~~~~~~~~~~--~~-~-~-----~~~~~~~r~-------------~~r~~~~l~ 273 (491)
T PLN02852 221 PVQAACTA-----KELRELLGLKNVRVRIKEADLTL--SP-E-D-----EEELKASRP-------------KRRVYELLS 273 (491)
T ss_pred hHhCCCCH-----HHHHHHhccCCCceeechhhhcc--cc-c-h-----hhhhccchh-------------hHHHHHHHH
Confidence 31111100 0111000 000 0000000 00 0 0 000000000 000000000
Q ss_pred hhhh---------cCCeEEecC--ceEEeC-----C---eEEE-----------------ccCc--EecccEEEEcCCCC
Q 014522 299 KKIR---------SGHINVVPG--IKRISC-----G---QAEL-----------------INGE--KLDIDAIVLATGYR 340 (423)
Q Consensus 299 ~~~~---------~~~i~~~~~--i~~~~~-----~---~v~~-----------------~~g~--~~~~D~vi~a~G~~ 340 (423)
+... ..++.++.. -.++.. + ++++ .+|+ ++++|.||.++|++
T Consensus 274 ~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~ 353 (491)
T PLN02852 274 KAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYK 353 (491)
T ss_pred HHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCC
Confidence 0000 023333321 122210 0 1111 1233 68999999999998
Q ss_pred --CCCCCc-c-ccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC----CcchhHHHHHHHHhhhhHH
Q 014522 341 --SNVPSW-L-QESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS----GASSDAMRIAQDIGKVWKE 403 (423)
Q Consensus 341 --~~~~~l-l-~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~----~a~~~g~~~a~~i~~~l~~ 403 (423)
|.. .+ + ...++ .+.+|++.++ ....|+.|||||+||+.+++. .++.+|..+|.+|..++..
T Consensus 354 ~~p~~-~l~f~~~~gv~~n~~G~V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 354 SLPVD-GLPFDHKRGVVPNVHGRVLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CCCCC-CCccccCcCeeECCCceEEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 443 32 2 23345 5678999887 456789999999999997644 8999999999999998765
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=2e-25 Score=224.60 Aligned_cols=275 Identities=20% Similarity=0.256 Sum_probs=181.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||+||+|+++|..|+++|++|+++|+.+.+||.++. .++.+ ....++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~---------~~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY---------------GIPAY---------RLPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCc---------cCCHHHHH
Confidence 4678999999999999999999999999999999999887643 12211 12233444
Q ss_pred HHHHHHHHcCCceeccceE-EEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceee
Q 014522 100 YLESYAEKFEINPRFNECV-QSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVI 178 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v-~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~ 178 (423)
.-.+.+.+++++++.++.+ .++. ... ....+|.||+|+|.+. +....+++... .+. +
T Consensus 192 ~~l~~~~~~Gv~~~~~~~~~~~~~-----------~~~--------~~~~~D~Vi~AtG~~~-~~~~~i~g~~~-~gv-~ 249 (564)
T PRK12771 192 AEIQRILDLGVEVRLGVRVGEDIT-----------LEQ--------LEGEFDAVFVAIGAQL-GKRLPIPGEDA-AGV-L 249 (564)
T ss_pred HHHHHHHHCCCEEEeCCEECCcCC-----------HHH--------HHhhCCEEEEeeCCCC-CCcCCCCCCcc-CCc-E
Confidence 4455666788887777654 2111 011 1224899999999532 22335665432 221 1
Q ss_pred ecCCC-----CCCCCCCCCEEEEECCCCCHHHHHHHHhccC-CccEEEEecCceeecccccCCChHHHHHHHHhhccHHH
Q 014522 179 HACDY-----KSGEKYKGKKVLVVGCGNSGMELSLDLSNHN-ASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWL 252 (423)
Q Consensus 179 ~~~~~-----~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g-~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (423)
....+ .......+++++|+|+|.+|++++..+.+.+ .+|++++|.+...++....
T Consensus 250 ~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~------------------- 310 (564)
T PRK12771 250 DAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE------------------- 310 (564)
T ss_pred EHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH-------------------
Confidence 11111 1112345789999999999999999999988 5699999987322221110
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe----------E
Q 014522 253 VDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ----------A 320 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----------v 320 (423)
.++...+.+|+++.+ +.++..+. +
T Consensus 311 --------------------------------------------~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~ 346 (564)
T PRK12771 311 --------------------------------------------EIEEALREGVEINWLRTPVEIEGDENGATGLRVITV 346 (564)
T ss_pred --------------------------------------------HHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEE
Confidence 011112234454433 33433211 1
Q ss_pred EE----c-------cC--cEecccEEEEcCCCCCCCCCcccc-cccccCCCCCCCCCCCCCCCCCceEEEeeccccCC--
Q 014522 321 EL----I-------NG--EKLDIDAIVLATGYRSNVPSWLQE-SEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS-- 384 (423)
Q Consensus 321 ~~----~-------~g--~~~~~D~vi~a~G~~~~~~~ll~~-~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~-- 384 (423)
.+ . +| .++++|.||+|+|+.|+. .+++. .++.+++|++.+|..+++|+.|+||++||+..++.
T Consensus 347 ~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v 425 (564)
T PRK12771 347 EKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS-AGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTV 425 (564)
T ss_pred EecccCCCCCeeecCCceEEEECCEEEECcCCCCch-hhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHH
Confidence 11 1 22 379999999999999986 66664 45656789999986578899999999999987543
Q ss_pred -CcchhHHHHHHHHhhhhHHH
Q 014522 385 -GASSDAMRIAQDIGKVWKEE 404 (423)
Q Consensus 385 -~a~~~g~~~a~~i~~~l~~~ 404 (423)
.|+.+|+.+|.+|...|.+.
T Consensus 426 ~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 426 TTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 79999999999999998743
No 77
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.93 E-value=1.6e-25 Score=216.65 Aligned_cols=288 Identities=19% Similarity=0.180 Sum_probs=210.0
Q ss_pred cCCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ---GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQF 97 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (423)
..+++|||.|++|..+..++.+. -+.|+++-..+.+. |+.+.+..- .+.--+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~v--------------l~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSV--------------LAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccc--------------cCCCccHHHH
Confidence 45799999999999999999995 36999998877542 444443211 1111244555
Q ss_pred HHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCcee
Q 014522 98 IQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEV 177 (423)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~ 177 (423)
.-.-.++++++++.++.+.+|+.++... .. |+++. + .++.||.+|+||| |.|++|++||.+.+.-..
T Consensus 62 ~l~~~dwy~~~~i~L~~~~~v~~idr~~--k~--V~t~~------g-~~~~YDkLilATG--S~pfi~PiPG~~~~~v~~ 128 (793)
T COG1251 62 SLNRNDWYEENGITLYTGEKVIQIDRAN--KV--VTTDA------G-RTVSYDKLIIATG--SYPFILPIPGSDLPGVFV 128 (793)
T ss_pred hccchhhHHHcCcEEEcCCeeEEeccCc--ce--EEccC------C-cEeecceeEEecC--ccccccCCCCCCCCCeeE
Confidence 5555677888999999999999998876 54 66665 5 7999999999999 999999999977544322
Q ss_pred eecCCCCC---CCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHH
Q 014522 178 IHACDYKS---GEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVD 254 (423)
Q Consensus 178 ~~~~~~~~---~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (423)
+...+... ......++.+|||+|..|+|+|..|.+.|.++++++-.+ +++.+-.
T Consensus 129 ~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQL---------------------- 185 (793)
T COG1251 129 YRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQL---------------------- 185 (793)
T ss_pred EecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhh----------------------
Confidence 32222111 112345568999999999999999999999999998888 2211111
Q ss_pred HHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEE----eCCeEEEccCcEe
Q 014522 255 KILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRI----SCGQAELINGEKL 328 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~----~~~~v~~~~g~~~ 328 (423)
++.....+...+.+.+++++.+ ..++ ...++.++||+++
T Consensus 186 -----------------------------------D~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i 230 (793)
T COG1251 186 -----------------------------------DRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEI 230 (793)
T ss_pred -----------------------------------hhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcc
Confidence 0011111334455556666654 2222 2245889999999
Q ss_pred cccEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeecccc-------CCCcchhHHHHHHHHhhhh
Q 014522 329 DIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRRG-------LSGASSDAMRIAQDIGKVW 401 (423)
Q Consensus 329 ~~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~g~~~a~~i~~~l 401 (423)
++|.|++|+|++||. .+....|+..++|.++.+ +++|+.|+|||+|.|+.. ...+..||+++|+++....
T Consensus 231 ~ad~VV~a~GIrPn~-ela~~aGlavnrGIvvnd--~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~ 307 (793)
T COG1251 231 PADLVVMAVGIRPND-ELAKEAGLAVNRGIVVND--YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGE 307 (793)
T ss_pred cceeEEEeccccccc-HhHHhcCcCcCCCeeecc--cccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCc
Confidence 999999999999998 888888886566888877 899999999999999842 3378899999999998876
Q ss_pred HH
Q 014522 402 KE 403 (423)
Q Consensus 402 ~~ 403 (423)
.+
T Consensus 308 ~~ 309 (793)
T COG1251 308 AE 309 (793)
T ss_pred cc
Confidence 54
No 78
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=6e-24 Score=225.21 Aligned_cols=282 Identities=16% Similarity=0.185 Sum_probs=184.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..+||+||||||||++||..|++.|++|+|+|+.+.+||.+.... . .+ +. ....++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~---------~~---------~g-~~~~~~~~ 219 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---E---------TI---------DG-KPAADWAA 219 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---c---------cc---------CC-ccHHHHHH
Confidence 368999999999999999999999999999999988888664311 0 00 01 12233333
Q ss_pred HHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEE-Ecc----c-CC-CCCceEEEEeCEEEEccCCCCCCcCCCCCCCC
Q 014522 100 YLESYAEKF-EINPRFNECVQSARYDETSGLWRVK-TAS----S-AG-STKTEFEYICRWLVVATGENAERVMPDIEGLA 171 (423)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~-~~~----~-~~-~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~ 171 (423)
.+...+..+ +++++.+++|.++.... ....+. ... . .+ ..+....+.||.||+||| +.+..|.+||.+
T Consensus 220 ~~~~~l~~~~~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATG--a~~r~~pipG~~ 295 (985)
T TIGR01372 220 ATVAELTAMPEVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATG--AHERPLVFANND 295 (985)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCC--CCCcCCCCCCCC
Confidence 333334444 48888889888775321 110011 000 0 00 000223689999999999 777777888865
Q ss_pred CCCceeeecC---CCC-CCCCCCCCEEEEECCCCCHHHHHHHHhccCCc-cEEEEecCceeecccccCCChHHHHHHHHh
Q 014522 172 DFGGEVIHAC---DYK-SGEKYKGKKVLVVGCGNSGMELSLDLSNHNAS-PSMVVRSSVHVLPREILGKSTFELATLMMK 246 (423)
Q Consensus 172 ~~~~~~~~~~---~~~-~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 246 (423)
.. + ++... .+. ......+++++|||+|.+|+|+|..|++.|.+ |+++.+.+. +.+
T Consensus 296 ~p-g-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~-~~~----------------- 355 (985)
T TIGR01372 296 RP-G-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARAD-VSP----------------- 355 (985)
T ss_pred CC-C-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcc-hhH-----------------
Confidence 42 1 11111 111 11223578999999999999999999999965 677766651 100
Q ss_pred hccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC----eE
Q 014522 247 WLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG----QA 320 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----~v 320 (423)
.+.+.+++.+|+++++ +.++..+ +|
T Consensus 356 -------------------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V 386 (985)
T TIGR01372 356 -------------------------------------------------EARAEARELGIEVLTGHVVAATEGGKRVSGV 386 (985)
T ss_pred -------------------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEE
Confidence 0223355668888877 6666643 34
Q ss_pred EEc----cCcEecccEEEEcCCCCCCCCCccccccc---ccCC--CCCCCCCCCCCCCCCceEEEeeccccC--CCcchh
Q 014522 321 ELI----NGEKLDIDAIVLATGYRSNVPSWLQESEF---FSEN--GFPKAPFPHGWKGNAGLYAVGFTRRGL--SGASSD 389 (423)
Q Consensus 321 ~~~----~g~~~~~D~vi~a~G~~~~~~~ll~~~~~---~~~~--g~~~~~~~~~~~~~~~vya~Gd~~~~~--~~a~~~ 389 (423)
++. +++++++|.|++++|+.|++ .|...++. .+.. ++. ..|+.|+||++||+++.. ..|..+
T Consensus 387 ~l~~~~g~~~~i~~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~~------~~t~v~gVyaaGD~~g~~~~~~A~~e 459 (985)
T TIGR01372 387 AVARNGGAGQRLEADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAFL------PGDAVQGCILAGAANGLFGLAAALAD 459 (985)
T ss_pred EEEecCCceEEEECCEEEEcCCcCchh-HHHHhcCCCeeeccccCcee------cCCCCCCeEEeeccCCccCHHHHHHH
Confidence 554 45689999999999999998 67666543 1211 121 125689999999998643 479999
Q ss_pred HHHHHHHHhhhhHH
Q 014522 390 AMRIAQDIGKVWKE 403 (423)
Q Consensus 390 g~~~a~~i~~~l~~ 403 (423)
|+.+|..|+..+..
T Consensus 460 G~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 460 GAAAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999877743
No 79
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.92 E-value=5.4e-25 Score=205.90 Aligned_cols=206 Identities=28% Similarity=0.389 Sum_probs=129.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCccccccc-CCceeecCCCccccCCCCCCCCC-----------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQG-VPFVMLERAECIASLWQKRT-YDRLNLHLPKQFCQLPKLQFPED----------- 87 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------- 87 (423)
++|+++||.||++|++|..|.+.+ .++.++|+++.. .|..++ .++..+.++.- .++.....|..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl-~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFL-KDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TT-SSSSTTT-TTSTTSHHHHHHHT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccc-cccCcCcCCCCcccHHHHHHHc
Confidence 589999999999999999999996 899999987643 466543 23333332211 11111111110
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCC--CeEEEEEcccCCCCCceEEEEeCEEEEcc
Q 014522 88 ---------FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETS--GLWRVKTASSAGSTKTEFEYICRWLVVAT 156 (423)
Q Consensus 88 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~vviAt 156 (423)
-..+|++.++.+|+++.+++++..++++++|++|...... ..|+|++.+.++ ....+.|+.||+|+
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGETYRARNVVLAT 155 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS----EEEEEESEEEE--
T ss_pred CChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCC---CeeEEEeCeEEECc
Confidence 1245799999999999999999779999999999988743 258999864332 44799999999999
Q ss_pred CCCCCCcCCCCCCCCCCCceeeecCCCCCCC--CCCCCEEEEECCCCCHHHHHHHHhccCC--ccEEEEecCceeecccc
Q 014522 157 GENAERVMPDIEGLADFGGEVIHACDYKSGE--KYKGKKVLVVGCGNSGMELSLDLSNHNA--SPSMVVRSSVHVLPREI 232 (423)
Q Consensus 157 G~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~~~e~a~~l~~~g~--~V~~v~r~~~~~~~~~~ 232 (423)
| ..|.+|...........++|++++.... ....++|+|||+|.+|.|++..|.+.+. +|++++|++ .+.|..+
T Consensus 156 G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~ 232 (341)
T PF13434_consen 156 G--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDD 232 (341)
T ss_dssp ----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB---
T ss_pred C--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCcc
Confidence 9 8888886432211235688998865532 5567899999999999999999999875 799999999 5556666
Q ss_pred cCC
Q 014522 233 LGK 235 (423)
Q Consensus 233 ~~~ 235 (423)
...
T Consensus 233 s~f 235 (341)
T PF13434_consen 233 SPF 235 (341)
T ss_dssp -CC
T ss_pred ccc
Confidence 533
No 80
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.90 E-value=2.7e-23 Score=189.13 Aligned_cols=294 Identities=17% Similarity=0.163 Sum_probs=190.6
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
...++|||+|+|-+|.+++..|--.-++|++|++.+++-=+|- . |...-+-.+...+.
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------L------------pS~~vGTve~rSIv 110 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------L------------PSTTVGTVELRSIV 110 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------c------------CCccccceeehhhh
Confidence 4578999999999999999999988999999998764321110 0 11111123445566
Q ss_pred HHHHHHHHHcCCc-eeccceEEEEEEeCCCCeEEEEEcccCCC-CCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCce
Q 014522 99 QYLESYAEKFEIN-PRFNECVQSARYDETSGLWRVKTASSAGS-TKTEFEYICRWLVVATGENAERVMPDIEGLADFGGE 176 (423)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~ 176 (423)
+-....+.+.... .+++.+...++.+. +. |++....++ ...+..+.||++|+|+| +.++.+.+||+.++...
T Consensus 111 EPIr~i~r~k~~~~~y~eAec~~iDp~~--k~--V~~~s~t~~~~~~e~~i~YDyLViA~G--A~~~TFgipGV~e~~~F 184 (491)
T KOG2495|consen 111 EPIRAIARKKNGEVKYLEAECTKIDPDN--KK--VHCRSLTADSSDKEFVIGYDYLVIAVG--AEPNTFGIPGVEENAHF 184 (491)
T ss_pred hhHHHHhhccCCCceEEecccEeecccc--cE--EEEeeeccCCCcceeeecccEEEEecc--CCCCCCCCCchhhchhh
Confidence 6666666655323 36778888888766 65 433332221 11336799999999999 78888899998875322
Q ss_pred eeecC----------------C---CCCCCCCCCCEEEEECCCCCHHHHHHHHhcc--------------CCccEEEEec
Q 014522 177 VIHAC----------------D---YKSGEKYKGKKVLVVGCGNSGMELSLDLSNH--------------NASPSMVVRS 223 (423)
Q Consensus 177 ~~~~~----------------~---~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------g~~V~~v~r~ 223 (423)
..... + ..+++...--+++|||||++|+|+|.+|+.. -.+||++...
T Consensus 185 LKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~ 264 (491)
T KOG2495|consen 185 LKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA 264 (491)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc
Confidence 11111 0 1111122234799999999999999999863 1246776665
Q ss_pred CceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhc
Q 014522 224 SVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRS 303 (423)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (423)
| .+|++++. .+.+ -..+...+
T Consensus 265 d-~iL~mFdk-----------------rl~~-----------------------------------------yae~~f~~ 285 (491)
T KOG2495|consen 265 D-HILNMFDK-----------------RLVE-----------------------------------------YAENQFVR 285 (491)
T ss_pred h-hHHHHHHH-----------------HHHH-----------------------------------------HHHHHhhh
Confidence 5 23333221 1100 01233456
Q ss_pred CCeEEecC--ceEEeCCeEEEccC----cEecccEEEEcCCCCCCCCCccccc----ccccCCCCCCCCCCCCCCCCCce
Q 014522 304 GHINVVPG--IKRISCGQAELING----EKLDIDAIVLATGYRSNVPSWLQES----EFFSENGFPKAPFPHGWKGNAGL 373 (423)
Q Consensus 304 ~~i~~~~~--i~~~~~~~v~~~~g----~~~~~D~vi~a~G~~~~~~~ll~~~----~~~~~~g~~~~~~~~~~~~~~~v 373 (423)
.+|.+..+ +..++++.+..+++ +++++-+++|+||..|. ++...+ +-.+++ .+.+|.-+...+.+||
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r--p~~k~lm~~i~e~~rr-~L~vDE~LrV~G~~nv 362 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR--PVIKDLMKQIDEQGRR-GLAVDEWLRVKGVKNV 362 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc--hhhhhHhhcCCccCce-eeeeeceeeccCcCce
Confidence 68888877 78888888776654 58999999999999988 343333 222223 4445533555789999
Q ss_pred EEEeecccc------CCCcchhHHHHHHHHhhhhH
Q 014522 374 YAVGFTRRG------LSGASSDAMRIAQDIGKVWK 402 (423)
Q Consensus 374 ya~Gd~~~~------~~~a~~~g~~~a~~i~~~l~ 402 (423)
||+|||+.. .+.|.+||.++|+++-....
T Consensus 363 fAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k 397 (491)
T KOG2495|consen 363 FAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGK 397 (491)
T ss_pred EEeccccccccCccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999932 22799999999999866543
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=3.4e-21 Score=175.20 Aligned_cols=330 Identities=23% Similarity=0.298 Sum_probs=204.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCcccccccC-Cceeec-----------CCCccccCCCCC---
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQG-VPFVMLERAECIASLWQKRTY-DRLNLH-----------LPKQFCQLPKLQ--- 83 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~~~gg~~~~~~~-~~~~~~-----------~~~~~~~~~~~~--- 83 (423)
..+|++.||-||+.|++|..|.+.+ .++..+|+++.+ .|..++. ++..+. .|...+++-++.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 4789999999999999999999986 789999998754 3544321 111111 122212211111
Q ss_pred -----CCCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEE--EEEcccCCCCCceEEEEeCEEEEcc
Q 014522 84 -----FPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWR--VKTASSAGSTKTEFEYICRWLVVAT 156 (423)
Q Consensus 84 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~--v~~~~~~~~~~~~~~~~~d~vviAt 156 (423)
|-..-..++.+.++.+|++|.+..+ -.++++++|+.|...+...... +.+.+ + ..++|+.||+++
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~------~-~~y~ar~lVlg~ 153 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN------G-TVYRARNLVLGV 153 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC------C-cEEEeeeEEEcc
Confidence 1111245689999999999999998 5679999999653322222222 33332 3 589999999999
Q ss_pred CCCCCCcCCC-CCCCCCCCceeeecCCCCCC-CCCCCC-EEEEECCCCCHHHHHHHHhcc----CCccEEEEecCceeec
Q 014522 157 GENAERVMPD-IEGLADFGGEVIHACDYKSG-EKYKGK-KVLVVGCGNSGMELSLDLSNH----NASPSMVVRSSVHVLP 229 (423)
Q Consensus 157 G~~~~~~~p~-~~g~~~~~~~~~~~~~~~~~-~~~~~~-~v~ViG~G~~~~e~a~~l~~~----g~~V~~v~r~~~~~~~ 229 (423)
| .+|.+|. +..+.. ..++|+.++... .+...+ .|.|||+|.+|.|+...|... ..++.|++|++ -++|
T Consensus 154 G--~~P~IP~~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf~p 228 (436)
T COG3486 154 G--TQPYIPPCFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GFLP 228 (436)
T ss_pred C--CCcCCChHHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CCCc
Confidence 9 8888884 232222 468999988643 333334 499999999999999999865 34589999999 5668
Q ss_pred ccccCCChHHHHHHHHhh---ccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhh--cC
Q 014522 230 REILGKSTFELATLMMKW---LPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIR--SG 304 (423)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 304 (423)
++..+...--+.+...++ +|+..++++..... +.-.+|. ...+...++.-|...+. +.
T Consensus 229 ~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~------~~YkgI~-----------~~ti~~Iy~~lY~~~l~~~~~ 291 (436)
T COG3486 229 MDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQR------LLYKGIS-----------FDTIEEIYDLLYEQSLGGRKP 291 (436)
T ss_pred cccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcC------ccccccC-----------HHHHHHHHHHHHHHHhcCCCC
Confidence 887644433333333333 45555555443322 1111111 00111122222222222 23
Q ss_pred CeEEecC--ceEEeCCe---EEEc-------cCcEecccEEEEcCCCCCCCCCcccccc--c-ccCCCCCCCCCCCC--C
Q 014522 305 HINVVPG--IKRISCGQ---AELI-------NGEKLDIDAIVLATGYRSNVPSWLQESE--F-FSENGFPKAPFPHG--W 367 (423)
Q Consensus 305 ~i~~~~~--i~~~~~~~---v~~~-------~g~~~~~D~vi~a~G~~~~~~~ll~~~~--~-~~~~g~~~~~~~~~--~ 367 (423)
++.+..+ +..++..+ +.+. ..+++++|.||+|||+....+.|++.+. + .+++|..+++.++. +
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~ 371 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLW 371 (436)
T ss_pred CeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeec
Confidence 5666655 66666544 3331 2348899999999999988878888773 3 67777766653332 2
Q ss_pred --CCCCceEEEeeccc
Q 014522 368 --KGNAGLYAVGFTRR 381 (423)
Q Consensus 368 --~~~~~vya~Gd~~~ 381 (423)
.....||+.|-...
T Consensus 372 ~~~~~~~ifvqn~e~h 387 (436)
T COG3486 372 DGPGKGRIFVQNAELH 387 (436)
T ss_pred CCCCcceEEEeccccc
Confidence 22346999997653
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.7e-20 Score=186.49 Aligned_cols=307 Identities=20% Similarity=0.213 Sum_probs=185.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
-++|.|||+||+|++||..|.+.|..|+++||.+.+||+... .++. +-..+.+.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y---------------gipn---------mkldk~vv~r 1840 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY---------------GIPN---------MKLDKFVVQR 1840 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee---------------cCCc---------cchhHHHHHH
Confidence 578999999999999999999999999999999999987543 2222 2344556666
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCce----
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGE---- 176 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~---- 176 (423)
-.++..+-|+++..++++- +. +..+. -.-..|.||+|+|. ..|+-.++||-+.. +.
T Consensus 1841 rv~ll~~egi~f~tn~eig--------k~--vs~d~--------l~~~~daiv~a~gs-t~prdlpv~grd~k-gv~fam 1900 (2142)
T KOG0399|consen 1841 RVDLLEQEGIRFVTNTEIG--------KH--VSLDE--------LKKENDAIVLATGS-TTPRDLPVPGRDLK-GVHFAM 1900 (2142)
T ss_pred HHHHHHhhCceEEeecccc--------cc--ccHHH--------HhhccCeEEEEeCC-CCCcCCCCCCcccc-ccHHHH
Confidence 6667777799988777662 11 33321 34567899999995 34555556664321 11
Q ss_pred -eeecC-------C-CCCCCCCCCCEEEEECCCCCHHHHHHHHhccCCc-cEEEEecCceeecccccCCChHHHHHHHHh
Q 014522 177 -VIHAC-------D-YKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNAS-PSMVVRSSVHVLPREILGKSTFELATLMMK 246 (423)
Q Consensus 177 -~~~~~-------~-~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~-V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 246 (423)
..|.+ . .......++|+|+|||+|.+|-++...-.++|.+ |.-+. ++|.....+ ...+...+
T Consensus 1901 e~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~e-----llp~pp~~r---a~~npwpq 1972 (2142)
T KOG0399|consen 1901 EFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFE-----LLPQPPPER---APDNPWPQ 1972 (2142)
T ss_pred HHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceeccee-----ecCCCCccc---CCCCCCcc
Confidence 01111 0 1112445689999999999999999999998864 43332 222222110 11111111
Q ss_pred hccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhh--cCCeEEecCceEEeC----Ce-
Q 014522 247 WLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIR--SGHINVVPGIKRISC----GQ- 319 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~i~~~~~----~~- 319 (423)
|=.....+--.......+-.++..+.+. -.+-+. +++++=.. +.+++. .+
T Consensus 1973 wprvfrvdygh~e~~~~~g~dpr~y~vl----------------------tk~f~~~~~g~v~gl~-~vrvew~k~~~g~ 2029 (2142)
T KOG0399|consen 1973 WPRVFRVDYGHAEAKEHYGSDPRTYSVL----------------------TKRFIGDDNGNVTGLE-TVRVEWEKDDKGR 2029 (2142)
T ss_pred CceEEEeecchHHHHHHhCCCcceeeee----------------------eeeeeccCCCceeeEE-EEEEEEEecCCCc
Confidence 1000000000111111111122222111 000011 11111100 122221 11
Q ss_pred EEEc----cCcEecccEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---CcchhHH
Q 014522 320 AELI----NGEKLDIDAIVLATGYRSNVPSWLQESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASSDAM 391 (423)
Q Consensus 320 v~~~----~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~g~ 391 (423)
+.+. ..+.++||+||+|.||..+.....+++++ .++++.+.+......+..+++||+|||.++.. +|+++|+
T Consensus 2030 w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egr 2109 (2142)
T KOG0399|consen 2030 WQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGR 2109 (2142)
T ss_pred eEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhh
Confidence 3222 23468999999999999886666888888 56688888776677889999999999999744 8999999
Q ss_pred HHHHHHhhhhH
Q 014522 392 RIAQDIGKVWK 402 (423)
Q Consensus 392 ~~a~~i~~~l~ 402 (423)
.+|+.+.....
T Consensus 2110 q~a~~vd~~~~ 2120 (2142)
T KOG0399|consen 2110 QAARQVDELMG 2120 (2142)
T ss_pred HHHHHHHHHhC
Confidence 99999876443
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=173.04 Aligned_cols=296 Identities=21% Similarity=0.235 Sum_probs=181.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.++|+||||||+|++||..|.+.|+.|+++|+.+..||.... .+ |.+-..+++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y---------------GI---------P~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY---------------GI---------PDFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe---------------cC---------chhhccchHHHH
Confidence 478999999999999999999999999999999999986543 22 333355667777
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeeec
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHA 180 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~ 180 (423)
..++.++.+++++.++++-. . ++... -.-.+|.|++|+|. ..|....+||.+.. + +...
T Consensus 179 ~i~~l~~~Gv~~~~~~~vG~--------~--it~~~--------L~~e~Dav~l~~G~-~~~~~l~i~g~d~~-g-v~~A 237 (457)
T COG0493 179 RLELLERSGVEFKLNVRVGR--------D--ITLEE--------LLKEYDAVFLATGA-GKPRPLDIPGEDAK-G-VAFA 237 (457)
T ss_pred HHHHHHHcCeEEEEcceECC--------c--CCHHH--------HHHhhCEEEEeccc-cCCCCCCCCCcCCC-c-chHH
Confidence 78888888999888887721 1 33332 22344999999997 56666677776521 1 1111
Q ss_pred CCC--------------CCCCCCCCCEEEEECCCCCHHHHHHHHhccCC-ccEEEEecCceeecccccCCChHHHHHHHH
Q 014522 181 CDY--------------KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNA-SPSMVVRSSVHVLPREILGKSTFELATLMM 245 (423)
Q Consensus 181 ~~~--------------~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~-~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
.++ .......+++++|||+|.+++|++....++|+ +|+.+.+.... ...... +.
T Consensus 238 ~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~-~~~~~~-----~~----- 306 (457)
T COG0493 238 LDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD-DETNEW-----PT----- 306 (457)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccccc-ccCCcc-----cc-----
Confidence 110 11122345999999999999999999999997 58877644321 000000 00
Q ss_pred hhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhh--hcCCeEEecC--ceEEeC----
Q 014522 246 KWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKI--RSGHINVVPG--IKRISC---- 317 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~--i~~~~~---- 317 (423)
.+.. .........++.+. +...-.+.+ .+++|.-... +.....
T Consensus 307 --~~~~-----------~~~~~a~eeg~~~~----------------~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~ 357 (457)
T COG0493 307 --WAAQ-----------LEVRSAGEEGVERL----------------PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGW 357 (457)
T ss_pred --cchh-----------hhhhhhhhcCCccc----------------ccCCceeEeecCCCcEeeeecccccccCccccc
Confidence 0000 00000111111100 000001111 1233331111 111000
Q ss_pred ---CeEEEccC-cEecccEEEEcCCCCCCCCCccc-cccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCC---Ccch
Q 014522 318 ---GQAELING-EKLDIDAIVLATGYRSNVPSWLQ-ESEF-FSENGFPKAPFPHGWKGNAGLYAVGFTRRGLS---GASS 388 (423)
Q Consensus 318 ---~~v~~~~g-~~~~~D~vi~a~G~~~~~~~ll~-~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~ 388 (423)
..+...+. ..+++|.|+.|+|+.++...+.. ..++ .+.+|.+.++....+|+.|++||.||+.++.. .|+.
T Consensus 358 ~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~ 437 (457)
T COG0493 358 GRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIA 437 (457)
T ss_pred ccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHh
Confidence 01112222 36899999999999998655322 2245 56789999885444899999999999998633 8999
Q ss_pred hHHHHHHHHhhhh
Q 014522 389 DAMRIAQDIGKVW 401 (423)
Q Consensus 389 ~g~~~a~~i~~~l 401 (423)
+|+.+|+.|...+
T Consensus 438 eGr~aak~i~~~~ 450 (457)
T COG0493 438 EGREAAKAIDKEL 450 (457)
T ss_pred hchHHHHhhhHHH
Confidence 9999999998443
No 84
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.81 E-value=5.8e-19 Score=172.23 Aligned_cols=278 Identities=19% Similarity=0.194 Sum_probs=178.4
Q ss_pred eEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 014522 24 PVIVGAGPSGLATAACLRDQG--VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQYL 101 (423)
Q Consensus 24 vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
++|||+|++|+++|..|.+.. .+++++.......... ........ ........+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~-----~~~~~~~~---------------~~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR-----CPLSLYVG---------------GGIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC-----CccchHHh---------------cccCCHHHhcccc
Confidence 589999999999999999864 5888887765332100 00000000 0001111111111
Q ss_pred HHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCceeeecC
Q 014522 102 ESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGGEVIHAC 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~~ 181 (423)
. ...+.++.++.+++|+.++... .. +.+.+ + .+.||++|+||| +.+..+. +... . ......
T Consensus 61 ~-~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~------g--~~~yd~LvlatG--a~~~~~~--~~~~-~-~~~~~~ 121 (415)
T COG0446 61 R-FNRATGIDVRTGTEVTSIDPEN--KV--VLLDD------G--EIEYDYLVLATG--ARPRPPP--ISDW-E-GVVTLR 121 (415)
T ss_pred h-hHHhhCCEEeeCCEEEEecCCC--CE--EEECC------C--cccccEEEEcCC--CcccCCC--cccc-C-ceEEEC
Confidence 1 1235588889999999998766 55 67765 4 899999999999 6666554 1110 0 011111
Q ss_pred CCCCC-----CCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHH
Q 014522 182 DYKSG-----EKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKI 256 (423)
Q Consensus 182 ~~~~~-----~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (423)
..... .....++++|+|+|..|+++|..+++.|.+|+++...+ ++++....
T Consensus 122 ~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~----------------------- 177 (415)
T COG0446 122 LREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLD----------------------- 177 (415)
T ss_pred CHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhh-----------------------
Confidence 11000 01115799999999999999999999999999999998 33332210
Q ss_pred HHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe-------EEEccCcE
Q 014522 257 LLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ-------AELINGEK 327 (423)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~-------v~~~~g~~ 327 (423)
+.....+.+.+++.+|+++.+ +.++.... +...++.+
T Consensus 178 ----------------------------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 223 (415)
T COG0446 178 ----------------------------------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE 223 (415)
T ss_pred ----------------------------------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcE
Confidence 111122344455667777665 56666532 46778889
Q ss_pred ecccEEEEcCCCCCCCCCcccccc--cccCCCCCCCCCCCCCCC-CCceEEEeeccccCC-------------CcchhHH
Q 014522 328 LDIDAIVLATGYRSNVPSWLQESE--FFSENGFPKAPFPHGWKG-NAGLYAVGFTRRGLS-------------GASSDAM 391 (423)
Q Consensus 328 ~~~D~vi~a~G~~~~~~~ll~~~~--~~~~~g~~~~~~~~~~~~-~~~vya~Gd~~~~~~-------------~a~~~g~ 391 (423)
+++|++++++|.+||. .+.++.+ .....|.+.++ ..++++ .++||++||++.... .+..+++
T Consensus 224 ~~~d~~~~~~g~~p~~-~l~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~ 301 (415)
T COG0446 224 IKADLVIIGPGERPNV-VLANDALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301 (415)
T ss_pred EEeeEEEEeecccccH-HHHhhCccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhH
Confidence 9999999999999995 6655554 56678888888 577776 999999999874211 4556666
Q ss_pred HHHHHHhhh
Q 014522 392 RIAQDIGKV 400 (423)
Q Consensus 392 ~~a~~i~~~ 400 (423)
.++.++...
T Consensus 302 i~~~~~~~~ 310 (415)
T COG0446 302 IAAENIAGA 310 (415)
T ss_pred HHHHHhccc
Confidence 666666543
No 85
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.80 E-value=2.3e-18 Score=154.69 Aligned_cols=164 Identities=21% Similarity=0.180 Sum_probs=114.1
Q ss_pred cccCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQ 96 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (423)
+..++|.|||+||||+.+|..|.++ +..|+|+|+.+.+.|+.+.+. .|.++.-+.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvKn 74 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVKN 74 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchhh
Confidence 3455999999999999999999995 589999999999888766542 244466666
Q ss_pred HHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCC---
Q 014522 97 FIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADF--- 173 (423)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~--- 173 (423)
+.+-+...+++....++.+..|- .. +.+.. -+-.||.||+|.|+ ..++..++||.+..
T Consensus 75 vintFt~~aE~~rfsf~gNv~vG--------~d--vsl~e--------L~~~ydavvLaYGa-~~dR~L~IPGe~l~~V~ 135 (468)
T KOG1800|consen 75 VINTFTKTAEHERFSFFGNVKVG--------RD--VSLKE--------LTDNYDAVVLAYGA-DGDRRLDIPGEELSGVI 135 (468)
T ss_pred HHHHHHHHhhccceEEEecceec--------cc--ccHHH--------HhhcccEEEEEecC-CCCcccCCCCcccccce
Confidence 77777788877666665555441 00 33332 34578999999997 45566789987621
Q ss_pred CceeeecCC------CCCCCCCCCCEEEEECCCCCHHHHHHHHhcc----------------------CCccEEEEecC
Q 014522 174 GGEVIHACD------YKSGEKYKGKKVLVVGCGNSGMELSLDLSNH----------------------NASPSMVVRSS 224 (423)
Q Consensus 174 ~~~~~~~~~------~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~----------------------g~~V~~v~r~~ 224 (423)
....+..|. .....+....+++|||.|++++++|+.|... -.+|+++.|+.
T Consensus 136 Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRg 214 (468)
T KOG1800|consen 136 SAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRG 214 (468)
T ss_pred ehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccC
Confidence 111111111 1123445578999999999999999998631 13689999988
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.78 E-value=9.1e-17 Score=153.57 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=100.1
Q ss_pred ccCCeEEECCChHHHHHHHHHH-HcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLR-DQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~-~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
..++|+||||||||++||..|. +.|++|+|+|+.+.+||+++.... +..+.-+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~ 94 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTY 94 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHH
Confidence 4678999999999999999875 569999999999999998876321 2223455666
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCC--------CC-C
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPD--------IE-G 169 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~--------~~-g 169 (423)
..+...+...+++++.+..| .. . ++.+. -.-.||.||+|+|+. ...+|- +. |
T Consensus 95 ~~f~~~~~~~~v~f~gnv~V-----G~---D--vt~ee--------L~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GG 155 (506)
T PTZ00188 95 KTFDPVFLSPNYRFFGNVHV-----GV---D--LKMEE--------LRNHYNCVIFCCGAS-EVSIPIGQQDEDKAVSGG 155 (506)
T ss_pred HHHHHHHhhCCeEEEeeeEe-----cC---c--cCHHH--------HHhcCCEEEEEcCCC-CCCCCcccccceeeeccc
Confidence 66666555556554433222 11 0 22222 223799999999963 222220 00 2
Q ss_pred CCC---CCc----eeeecCCCCCC------CC------C-CCCEEEEECCCCCHHHHHHHHhc-----------------
Q 014522 170 LAD---FGG----EVIHACDYKSG------EK------Y-KGKKVLVVGCGNSGMELSLDLSN----------------- 212 (423)
Q Consensus 170 ~~~---~~~----~~~~~~~~~~~------~~------~-~~~~v~ViG~G~~~~e~a~~l~~----------------- 212 (423)
.+. ..| ..+..+..... .. + ..++++|||.|++|+++|+.|+.
T Consensus 156 e~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~ 235 (506)
T PTZ00188 156 ETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKV 235 (506)
T ss_pred cccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHH
Confidence 210 111 11111100000 01 1 45689999999999999998642
Q ss_pred ---cC-CccEEEEecC
Q 014522 213 ---HN-ASPSMVVRSS 224 (423)
Q Consensus 213 ---~g-~~V~~v~r~~ 224 (423)
.. .+|+++.|+.
T Consensus 236 L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 236 IKRHNIKHIYIVGRRG 251 (506)
T ss_pred HHhCCCcEEEEEEecC
Confidence 22 3699999998
No 87
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=5.5e-16 Score=145.46 Aligned_cols=371 Identities=21% Similarity=0.252 Sum_probs=207.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcC---CCEEEEecCCCCC-cccccccCCceeecCCCccccCC--CCC-----------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQG---VPFVMLERAECIA-SLWQKRTYDRLNLHLPKQFCQLP--KLQ----------- 83 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g---~~v~lie~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~--~~~----------- 83 (423)
+++|+|||+|++|++.|.+|.+.- ..|.|+|+.+..| |..+....+...++++...++.. +.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 468999999999999999999973 2499999998776 56655555566666665543332 100
Q ss_pred --------CCCCCCCCCCHHHHHHHHHHHHHHc----CCc--eeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEe
Q 014522 84 --------FPEDFPEYPTKRQFIQYLESYAEKF----EIN--PRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYIC 149 (423)
Q Consensus 84 --------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (423)
...+-+.|+.+..+-+|+.+....+ ... .+..++++++......+.|.++..+ + ....|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~------g-~~~~a 153 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTAD------G-PSEIA 153 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCC------C-Ceeee
Confidence 1123356777777777776655433 211 2556667777776433666666655 5 68899
Q ss_pred CEEEEccCCCCCCcCCCCCCCCCCCcee--eecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccCC--ccEEEEecCc
Q 014522 150 RWLVVATGENAERVMPDIEGLADFGGEV--IHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHNA--SPSMVVRSSV 225 (423)
Q Consensus 150 d~vviAtG~~~~~~~p~~~g~~~~~~~~--~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~--~V~~v~r~~~ 225 (423)
|.+|+|||....+..+-...+......+ ....+..+.. ....+|+|+|+|.+.++....|.++|+ +||+++|+.
T Consensus 154 d~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v-~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG- 231 (474)
T COG4529 154 DIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGV-DADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG- 231 (474)
T ss_pred eEEEEeccCCCCCcchhhhccCCCcceeccccCCcccccc-cCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-
Confidence 9999999952222211001111111111 1111223322 235569999999999999999999876 599999998
Q ss_pred eeecccccCCChHHHH----------HHHHhhccHHH-------------HHHHHHHH--HHHHhccccccCCCCCCCCc
Q 014522 226 HVLPREILGKSTFELA----------TLMMKWLPLWL-------------VDKILLIL--AWFILGNTESYGLKRPSMGP 280 (423)
Q Consensus 226 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 280 (423)
+.|..+.......+. ..+..++...+ .|.++... .+......++..+ -....+
T Consensus 232 -l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf-~rH~~~ 309 (474)
T COG4529 232 -LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRF-ERHLRP 309 (474)
T ss_pred -cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHH-HHhccc
Confidence 334333222111100 00111111100 11111111 1122222222211 112234
Q ss_pred ccccccCCCccccChhhhhhhhcCCeEEecC-ceEEe---CCe-EEEc----c-CcEecccEEEEcCCCCCCCC----Cc
Q 014522 281 LALKNTMGKTPVLDIGALKKIRSGHINVVPG-IKRIS---CGQ-AELI----N-GEKLDIDAIVLATGYRSNVP----SW 346 (423)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~---~~~-v~~~----~-g~~~~~D~vi~a~G~~~~~~----~l 346 (423)
++..+.+...|.......+.+.++.++++.+ +..++ ++. +.+. + .+++++|.||.|+|..+... .+
T Consensus 310 ~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~ 389 (474)
T COG4529 310 IWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPF 389 (474)
T ss_pred HHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHH
Confidence 4444556778888888888899999999987 44333 331 3332 2 24789999999999887642 12
Q ss_pred cccc---ccc--cC--CCCCCCCCCC----CCCCCCceEEEeeccccCC---CcchhHHHHHHHHhhhhH
Q 014522 347 LQES---EFF--SE--NGFPKAPFPH----GWKGNAGLYAVGFTRRGLS---GASSDAMRIAQDIGKVWK 402 (423)
Q Consensus 347 l~~~---~~~--~~--~g~~~~~~~~----~~~~~~~vya~Gd~~~~~~---~a~~~g~~~a~~i~~~l~ 402 (423)
+..+ |+. +. .|..+.+... ..+..+++||+|..+.+.. .++-+-+..|..+...+.
T Consensus 390 L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 390 LRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred HHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 2222 331 11 2332222100 1235678999999987753 344444444444444333
No 88
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.74 E-value=3.4e-18 Score=154.95 Aligned_cols=302 Identities=16% Similarity=0.200 Sum_probs=186.4
Q ss_pred cccCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC--------cccccccCCceeecCCCccccCCCCCCC---
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIA--------SLWQKRTYDRLNLHLPKQFCQLPKLQFP--- 85 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (423)
+.+-..+|||+|.+..+++...... +.++.+|...+..+ .+|.... +.....+.+.++.
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d--------pn~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD--------PNSAKKLRFKQWSGKE 247 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC--------CChhhheeecccCCcc
Confidence 3466789999999999888777655 57888888665332 1232211 1111111111110
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 86 -----EDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 86 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
+-...|++.+++-+.... |+-+..+.+|..++..+ .. |++++ | .++.||.++|||| .
T Consensus 248 Rsiffepd~FfvspeDLp~~~nG-----GvAvl~G~kvvkid~~d--~~--V~LnD------G-~~I~YdkcLIATG--~ 309 (659)
T KOG1346|consen 248 RSIFFEPDGFFVSPEDLPKAVNG-----GVAVLRGRKVVKIDEED--KK--VILND------G-TTIGYDKCLIATG--V 309 (659)
T ss_pred ceeEecCCcceeChhHCcccccC-----ceEEEeccceEEeeccc--Ce--EEecC------C-cEeehhheeeecC--c
Confidence 001234555555443222 67788888999888766 55 88877 6 7999999999999 5
Q ss_pred CCcCC-CCCCC-CCCCc--eeeecCCCCCC---CCCCCCEEEEECCCCCHHHHHHHHhcc----CCccEEEEecCceeec
Q 014522 161 ERVMP-DIEGL-ADFGG--EVIHACDYKSG---EKYKGKKVLVVGCGNSGMELSLDLSNH----NASPSMVVRSSVHVLP 229 (423)
Q Consensus 161 ~~~~p-~~~g~-~~~~~--~~~~~~~~~~~---~~~~~~~v~ViG~G~~~~e~a~~l~~~----g~~V~~v~r~~~~~~~ 229 (423)
+|... .+..- ++... .+++....... .....++|-|||+|+.|.|+|-.|.+. |.+|+.++....
T Consensus 310 ~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---- 385 (659)
T KOG1346|consen 310 RPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---- 385 (659)
T ss_pred CcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----
Confidence 66432 12110 11111 22333222111 112347899999999999999999875 556766655442
Q ss_pred ccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEe
Q 014522 230 REILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVV 309 (423)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 309 (423)
.+...+..++..| -.+.++++++.++
T Consensus 386 ---------nm~kiLPeyls~w---------------------------------------------t~ekir~~GV~V~ 411 (659)
T KOG1346|consen 386 ---------NMEKILPEYLSQW---------------------------------------------TIEKIRKGGVDVR 411 (659)
T ss_pred ---------ChhhhhHHHHHHH---------------------------------------------HHHHHHhcCceec
Confidence 2222222222222 3556778899998
Q ss_pred cC--ceEEe--CC--eEEEccCcEecccEEEEcCCCCCCCCCccccccc-ccC-CCCCCCCCCCCCCCCCceEEEeeccc
Q 014522 310 PG--IKRIS--CG--QAELINGEKLDIDAIVLATGYRSNVPSWLQESEF-FSE-NGFPKAPFPHGWKGNAGLYAVGFTRR 381 (423)
Q Consensus 310 ~~--i~~~~--~~--~v~~~~g~~~~~D~vi~a~G~~~~~~~ll~~~~~-~~~-~g~~~~~~~~~~~~~~~vya~Gd~~~ 381 (423)
++ |..+. .. .+.+.||.++..|+|++|+|-.||. ++.+..++ .+. -|-+.+|. .-....|||++||++-
T Consensus 412 pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLeiD~~lGGfrvna--eL~ar~NvwvAGdaac 488 (659)
T KOG1346|consen 412 PNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLEIDEKLGGFRVNA--ELKARENVWVAGDAAC 488 (659)
T ss_pred cchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch-hhcccccceeecccCcEEeeh--eeecccceeeecchhh
Confidence 87 33222 22 2677899999999999999999998 88888887 443 45556662 3334589999999873
Q ss_pred c------------CCCcchhHHHHHHHHhhhhHHHHHH
Q 014522 382 G------------LSGASSDAMRIAQDIGKVWKEETKQ 407 (423)
Q Consensus 382 ~------------~~~a~~~g~~~a~~i~~~l~~~~~~ 407 (423)
+ ...|+-.|+.+..|+.+.-+...++
T Consensus 489 F~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hq 526 (659)
T KOG1346|consen 489 FEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQ 526 (659)
T ss_pred hhcccccceeccccccceeeceecccccccccCCcccc
Confidence 2 1157777888888887665544443
No 89
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.72 E-value=1.1e-16 Score=163.16 Aligned_cols=186 Identities=14% Similarity=0.174 Sum_probs=97.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc-------ccCCceeec-CCCccccCCCCCCCCCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK-------RTYDRLNLH-LPKQFCQLPKLQFPEDFPEY 91 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 91 (423)
..++|+||||||||++||+.|++.|++|+++|+.+..|+.... +.+..+... .+...-....+..+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R---- 457 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVR---- 457 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcccc----
Confidence 5779999999999999999999999999999987543332110 001111100 0000001111111111
Q ss_pred CCHHHHHHHHHHHHHHcCCceec--cceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCC
Q 014522 92 PTKRQFIQYLESYAEKFEINPRF--NECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEG 169 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g 169 (423)
......+.+.... +.+..+.+ +.++ . .. ++.++ .....||.||+|||+ ..|..+.+||
T Consensus 458 -~~k~~l~~i~~il-~~g~~v~~~~gv~l---G-----~d--it~ed-------l~~~gyDAV~IATGA-~kpr~L~IPG 517 (1028)
T PRK06567 458 -WDKNNLDILRLIL-ERNNNFKYYDGVAL---D-----FN--ITKEQ-------AFDLGFDHIAFCIGA-GQPKVLDIEN 517 (1028)
T ss_pred -chHHHHHHHHHHH-hcCCceEEECCeEE---C-----cc--CCHHH-------HhhcCCCEEEEeCCC-CCCCCCCCCC
Confidence 1112222222222 22333333 4332 0 11 22221 134679999999994 2677778888
Q ss_pred CCCCCceeeecCCCCC-------------CCCCCCCEEEEECCCCCHHHHHHHHhcc---CCccEEEEecCceeecccc
Q 014522 170 LADFGGEVIHACDYKS-------------GEKYKGKKVLVVGCGNSGMELSLDLSNH---NASPSMVVRSSVHVLPREI 232 (423)
Q Consensus 170 ~~~~~~~~~~~~~~~~-------------~~~~~~~~v~ViG~G~~~~e~a~~l~~~---g~~V~~v~r~~~~~~~~~~ 232 (423)
.+. .+ ++...+++. .....+++|+|||||.+|+|+|...... +.++++....+ ..+|.++
T Consensus 518 eda-~G-V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~~~~~~d 593 (1028)
T PRK06567 518 FEA-KG-VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-KDLTEED 593 (1028)
T ss_pred ccC-CC-eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-hhccccc
Confidence 654 11 222222111 0112357899999999999999976653 44455444433 2334444
No 90
>PRK09897 hypothetical protein; Provisional
Probab=99.71 E-value=1.1e-15 Score=150.40 Aligned_cols=190 Identities=14% Similarity=0.150 Sum_probs=113.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCC-cc-cccccCCceeecCCCccccCCCCC-----C-------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIA-SL-WQKRTYDRLNLHLPKQFCQLPKLQ-----F------- 84 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~g-g~-~~~~~~~~~~~~~~~~~~~~~~~~-----~------- 84 (423)
|++|+|||||++|+++|..|.+.+ ++|+|||+...+| |. |.... +...+..+...+..+..+ +
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~-~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEE-NSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCC-ChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 468999999999999999999874 5999999987776 43 44321 111111110000111000 0
Q ss_pred ----------CCCCCCCCCHHHHHHHHHHHH----H---HcC--CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceE
Q 014522 85 ----------PEDFPEYPTKRQFIQYLESYA----E---KFE--INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEF 145 (423)
Q Consensus 85 ----------~~~~~~~~~~~~~~~~~~~~~----~---~~~--~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~ 145 (423)
......|+++..+-+|+.+.. + ..+ +.++.+++|+++...+ +.|.+++.+ +..
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~------gg~ 151 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQ------DLP 151 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECC------CCe
Confidence 001123555544444444332 2 233 4566788999998876 677787754 326
Q ss_pred EEEeCEEEEccCCCCCCcCCCCCCCCCCCceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccC-----------
Q 014522 146 EYICRWLVVATGENAERVMPDIEGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHN----------- 214 (423)
Q Consensus 146 ~~~~d~vviAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g----------- 214 (423)
.+.+|.||+|+|.. .|..+ ++.. .++-..+.........+.+|+|+|.|.++++++..|...|
T Consensus 152 ~i~aD~VVLAtGh~-~p~~~--~~~~---~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~ 225 (534)
T PRK09897 152 SETFDLAVIATGHV-WPDEE--EATR---TYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHV 225 (534)
T ss_pred EEEcCEEEECCCCC-CCCCC--hhhc---cccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcc
Confidence 89999999999952 22211 1111 1111111111111223689999999999999999987552
Q ss_pred --------C--ccEEEEecCc
Q 014522 215 --------A--SPSMVVRSSV 225 (423)
Q Consensus 215 --------~--~V~~v~r~~~ 225 (423)
. ++++++|+..
T Consensus 226 ~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 226 VFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred eeeecCCCCCceEEEEeCCCC
Confidence 2 5899999984
No 91
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.67 E-value=2.8e-16 Score=138.07 Aligned_cols=301 Identities=16% Similarity=0.157 Sum_probs=173.6
Q ss_pred ccccCCeEEECCChHHHHHHHHHHHc-CC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHH
Q 014522 18 CIWVNGPVIVGAGPSGLATAACLRDQ-GV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKR 95 (423)
Q Consensus 18 ~~~~~~vvIIGaG~aGl~~A~~L~~~-g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (423)
...+++|+|||||.+|++.|..+.++ |. +|.|+|..+. +.|+.....+.....++....-+.. .-.|...
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~-------HyYQPgfTLvGgGl~~l~~srr~~a-~liP~~a 107 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED-------HYYQPGFTLVGGGLKSLDSSRRKQA-SLIPKGA 107 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh-------cccCcceEEeccchhhhhhccCccc-ccccCCc
Confidence 35789999999999999999999887 64 9999998753 2233332222222222211110000 0011111
Q ss_pred HHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCCCCc
Q 014522 96 QFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLADFGG 175 (423)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~~~~ 175 (423)
.+...+|+.+++++ .. |.+.+ | +++.||++|||.| .....-.++|+.+.-.
T Consensus 108 ----------------~wi~ekv~~f~P~~--N~--v~t~g------g-~eIsYdylviA~G--iql~y~~IkGl~Eal~ 158 (446)
T KOG3851|consen 108 ----------------TWIKEKVKEFNPDK--NT--VVTRG------G-EEISYDYLVIAMG--IQLDYGKIKGLVEALD 158 (446)
T ss_pred ----------------HHHHHHHHhcCCCc--Ce--EEccC------C-cEEeeeeEeeeee--ceeccchhcChHhhcc
Confidence 12334455555554 54 66664 5 7999999999999 5555667777654211
Q ss_pred --eeeecCCC--C-----CCCCC---------CCCEEEEECCCCCHHHHHHHHhcc-CC--ccEEEEecCceeecccccC
Q 014522 176 --EVIHACDY--K-----SGEKY---------KGKKVLVVGCGNSGMELSLDLSNH-NA--SPSMVVRSSVHVLPREILG 234 (423)
Q Consensus 176 --~~~~~~~~--~-----~~~~~---------~~~~v~ViG~G~~~~e~a~~l~~~-g~--~V~~v~r~~~~~~~~~~~~ 234 (423)
.++..... . ....+ ...-+-.-|+-.-.+-+++..-+. |. ++.++....- |.-
T Consensus 159 tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl---~~i--- 232 (446)
T KOG3851|consen 159 TPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSL---PTI--- 232 (446)
T ss_pred CCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCc---cce---
Confidence 11111100 0 00011 111233334444444455444332 43 2444443330 100
Q ss_pred CChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEec--Cc
Q 014522 235 KSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVP--GI 312 (423)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~i 312 (423)
|. ...+.+.+.+.+++.+|++.. ++
T Consensus 233 -------------Fg----------------------------------------Vk~Y~~AL~k~~~~rni~vn~krnL 259 (446)
T KOG3851|consen 233 -------------FG----------------------------------------VKHYADALEKVIQERNITVNYKRNL 259 (446)
T ss_pred -------------ec----------------------------------------HHHHHHHHHHHHHhcceEeeeccce
Confidence 00 112334455666677777654 34
Q ss_pred eEEeCCe--EEEc---c-Cc--EecccEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCC-CCCCceEEEeeccccC
Q 014522 313 KRISCGQ--AELI---N-GE--KLDIDAIVLATGYRSNVPSWLQESEFFSENGFPKAPFPHGW-KGNAGLYAVGFTRRGL 383 (423)
Q Consensus 313 ~~~~~~~--v~~~---~-g~--~~~~D~vi~a~G~~~~~~~ll~~~~~~~~~g~~~~~~~~~~-~~~~~vya~Gd~~~~~ 383 (423)
.++..+. .+++ + |. +++++++-+....++. +++..+.+.+..|++.+|..+++ +..||||++|||.+.+
T Consensus 260 iEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p--e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~P 337 (446)
T KOG3851|consen 260 IEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP--EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLP 337 (446)
T ss_pred EEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh--hhhhcCcccCcccceecChhhhccccCCCceeeccccCCC
Confidence 4444322 2222 2 43 7888888887777766 77888878899999999965544 6899999999999754
Q ss_pred C-----CcchhHHHHHHHHhhhhHHHHHHHhhhhhhhhhhh
Q 014522 384 S-----GASSDAMRIAQDIGKVWKEETKQQKKRTTACHRRC 419 (423)
Q Consensus 384 ~-----~a~~~g~~~a~~i~~~l~~~~~~~~~~~~~~~~~~ 419 (423)
. ....|..++-+|+...+++...-.. ++++.+|
T Consensus 338 nsKTaAAvaaq~~vv~~nl~~~m~g~~pt~~---ydGYtSC 375 (446)
T KOG3851|consen 338 NSKTAAAVAAQSPVVDKNLTQVMQGKRPTMK---YDGYTSC 375 (446)
T ss_pred chhhHHHHHhcCchhhhhHHHHhcCCCccee---ecCcccC
Confidence 4 3446777888899888888777777 7877777
No 92
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.65 E-value=1.1e-16 Score=140.22 Aligned_cols=121 Identities=23% Similarity=0.307 Sum_probs=75.3
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH---
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ--- 99 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 99 (423)
||+|||||+||++||..|++.+.+++++|+.+..+... ...+...... .......+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS-GCIPSPLLVE------------------IAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH-SHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc-cccccccccc------------------ccccccccccccc
Confidence 69999999999999999999999999998865321100 0000000000 0000111110
Q ss_pred -HHHHHHHHcCCceeccceEEEEEEeCCCCe-----EEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCC
Q 014522 100 -YLESYAEKFEINPRFNECVQSARYDETSGL-----WRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGL 170 (423)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~ 170 (423)
.+.+.+...+++++.+++|.+++... +. +.+..... ++..++.||+||+||| +.|..|.+||.
T Consensus 62 ~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~----~~~~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVET----GDGREIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEET----TTEEEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEEeeccccccccccc--cccccCcccceeecc----CCceEecCCeeeecCc--cccceeecCCC
Confidence 22222345688888889999998876 42 12222111 1347999999999999 78888888886
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.63 E-value=1.6e-14 Score=133.92 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=58.1
Q ss_pred cEecccEEEEcCCCCCCCC--Cccccccc-ccCCCCCCCCCCCCC---CCCCceEEEeecccc--CCCcchhHHHHHHHH
Q 014522 326 EKLDIDAIVLATGYRSNVP--SWLQESEF-FSENGFPKAPFPHGW---KGNAGLYAVGFTRRG--LSGASSDAMRIAQDI 397 (423)
Q Consensus 326 ~~~~~D~vi~a~G~~~~~~--~ll~~~~~-~~~~g~~~~~~~~~~---~~~~~vya~Gd~~~~--~~~a~~~g~~~a~~i 397 (423)
.++++|+|++++|..|... .+.+-+|+ .+.+||+...++.+. ++.+|||++|-+.++ +..++.||..+|...
T Consensus 461 ~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaqa~aAA~kA 540 (622)
T COG1148 461 KEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQAKAAAAKA 540 (622)
T ss_pred eecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHHHHHhHHHHHHH
Confidence 3789999999999998642 23444577 677899887755554 578999999999886 446778887777766
Q ss_pred hhhhHH
Q 014522 398 GKVWKE 403 (423)
Q Consensus 398 ~~~l~~ 403 (423)
...+..
T Consensus 541 ~~~l~~ 546 (622)
T COG1148 541 AQLLGR 546 (622)
T ss_pred HHHhhc
Confidence 665543
No 94
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.49 E-value=1.8e-13 Score=117.41 Aligned_cols=298 Identities=18% Similarity=0.210 Sum_probs=145.9
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 23 GPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
+.+|||||.||.+||..|+.+ ..+|+++..++-+-.. ..-..+..|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv--------------------------------tn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV--------------------------------TNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH--------------------------------hhHHHHHHH
Confidence 368999999999999999988 4689998876422100 011222222
Q ss_pred HHHHH------HHcCCce--eccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCC
Q 014522 101 LESYA------EKFEINP--RFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLAD 172 (423)
Q Consensus 101 ~~~~~------~~~~~~~--~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~ 172 (423)
+..+- ..++-++ +.+. |...+. ....+.+.+ | ..+.|++|++|+| .+|..- ..+.+
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~~-v~~~~s----~ehci~t~~------g-~~~ky~kKOG~tg--~kPklq-~E~~n- 112 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLND-VVTWDS----SEHCIHTQN------G-EKLKYFKLCLCTG--YKPKLQ-VEGIN- 112 (334)
T ss_pred HHhcCccccchhhhcccHHHHHHh-hhhhcc----ccceEEecC------C-ceeeEEEEEEecC--CCccee-ecCCC-
Confidence 22210 0111111 1111 222222 223377766 5 7899999999999 666432 12212
Q ss_pred CCceeeecCCC-----CCCCCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhh
Q 014522 173 FGGEVIHACDY-----KSGEKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKW 247 (423)
Q Consensus 173 ~~~~~~~~~~~-----~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (423)
..++..-+. ......+.|.|.|+|.|-+++|++.++... +|+|....+ ++-..+...+.. ++... ++
T Consensus 113 --~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfdpGaa-ef~~i--~l 184 (334)
T KOG2755|consen 113 --PKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFDPGAA-EFYDI--NL 184 (334)
T ss_pred --ceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccCccHH-HHhHh--hh
Confidence 223332222 112334578999999999999999999875 688888877 332222210000 11000 00
Q ss_pred ccHHHHHHHH-HHHHH-HHhccccccCCCCCCCCcccccc--cCCCccccChhhhhhhhcCCeEEecC--ceEEeCC-eE
Q 014522 248 LPLWLVDKIL-LILAW-FILGNTESYGLKRPSMGPLALKN--TMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG-QA 320 (423)
Q Consensus 248 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-~v 320 (423)
......+... +.++- ....+-+.. .-.+.++|.+-.. ..+..- ..+.....++..-+.+... ...+... ..
T Consensus 185 ~a~~s~~~iaiKh~q~iea~pk~~~n-~vg~algpDw~s~~dl~g~~e-seer~l~~l~~~~~~~~d~~d~~sv~~~~~e 262 (334)
T KOG2755|consen 185 RADRSTRIIAIKHFQYIEAFPKCEEN-NVGPALGPDWHSQIDLQGISE-SENRSLTYLRNCVITSTDTSDNLSVHYMDKE 262 (334)
T ss_pred hcccccchhhhhhhhhhhhcCccccc-CcccccCcchhhhcccccchh-hhhhhhHHhhhheeeeccchhhccccccccc
Confidence 0000000000 00000 011111111 1112223332211 111111 1111122222222222111 0000000 01
Q ss_pred EEccCcEecccEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEeeccc
Q 014522 321 ELINGEKLDIDAIVLATGYRSNVPSW-LQESEFFSENGFPKAPFPHGWKGNAGLYAVGFTRR 381 (423)
Q Consensus 321 ~~~~g~~~~~D~vi~a~G~~~~~~~l-l~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~ 381 (423)
.-.+ ..+-+|.++.|||..||.. | ...+--..++|-+.++ ..+.|+.|++||+||...
T Consensus 263 k~~~-~qlt~d~ivSatgvtpn~e-~~~~~~lq~~edggikvd-d~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 263 KMAD-NQLTCDFIVSATGVTPNSE-WAMNKMLQITEDGGIKVD-DAMETSLPDVFAAGDVCT 321 (334)
T ss_pred cccc-ceeeeeEEEeccccCcCce-EEecChhhhccccCeeeh-hhccccccceeeecceec
Confidence 1112 2567999999999999985 5 4444225667777777 489999999999999765
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=2.9e-13 Score=124.25 Aligned_cols=134 Identities=19% Similarity=0.293 Sum_probs=94.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccc-c--cCCceeecCC---C----ccccCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--------LWQK-R--TYDRLNLHLP---K----QFCQLPK 81 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--------~~~~-~--~~~~~~~~~~---~----~~~~~~~ 81 (423)
+.+||+||||||||++||..+.++|.+|+|||+.+.+|- .++- + .++.+....| . .+..+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 578999999999999999999999999999999986663 2221 1 1111111111 0 0000100
Q ss_pred -----------CCC--CCC---CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceE
Q 014522 82 -----------LQF--PED---FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEF 145 (423)
Q Consensus 82 -----------~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~ 145 (423)
..+ .+. ++.-.....+.+.+...+++.++.++.+++|.++...+ ..|.+.+.+ + .
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~------g-~ 152 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSS------G-E 152 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCC------C-C
Confidence 000 000 11113678899999999999999999999999999887 788888887 5 4
Q ss_pred EEEeCEEEEccCCCCCC
Q 014522 146 EYICRWLVVATGENAER 162 (423)
Q Consensus 146 ~~~~d~vviAtG~~~~~ 162 (423)
++++|.+|+|||..+.|
T Consensus 153 ~i~~d~lilAtGG~S~P 169 (408)
T COG2081 153 TVKCDSLILATGGKSWP 169 (408)
T ss_pred EEEccEEEEecCCcCCC
Confidence 89999999999976655
No 96
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.44 E-value=8.4e-13 Score=126.74 Aligned_cols=35 Identities=17% Similarity=0.391 Sum_probs=32.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
|++||+|||+|++|+++|..|++.|.+|++||+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 56899999999999999999999999999999863
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.34 E-value=7.1e-12 Score=120.01 Aligned_cols=133 Identities=22% Similarity=0.328 Sum_probs=74.9
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccccc----CCceeecC---CCcc----ccC---
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--------LWQKRT----YDRLNLHL---PKQF----CQL--- 79 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--------~~~~~~----~~~~~~~~---~~~~----~~~--- 79 (423)
|||+|||||+||++||..|++.|.+|+|+|+++.+|- .++... ...+.... +... ..+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999987762 222110 00111000 0000 000
Q ss_pred --------CCCCC---CCC--CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEE
Q 014522 80 --------PKLQF---PED--FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFE 146 (423)
Q Consensus 80 --------~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (423)
...+. ++. +|.-.....+.+.+...+++.+++++++++|.++..+++ +.|.|.+.+ + ..
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~------~-~~ 152 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKN------G-GE 152 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETT------T-EE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccC------c-cc
Confidence 00000 000 111125788889999999999999999999999988762 448888843 3 79
Q ss_pred EEeCEEEEccCCCCCC
Q 014522 147 YICRWLVVATGENAER 162 (423)
Q Consensus 147 ~~~d~vviAtG~~~~~ 162 (423)
+.+|.||+|||..+.|
T Consensus 153 ~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 153 YEADAVILATGGKSYP 168 (409)
T ss_dssp EEESEEEE----SSSG
T ss_pred ccCCEEEEecCCCCcc
Confidence 9999999999965544
No 98
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.32 E-value=3.3e-11 Score=100.51 Aligned_cols=125 Identities=25% Similarity=0.316 Sum_probs=91.8
Q ss_pred EEECCChHHHHHHHHHHHc-----CCCEEEEecCCCC-CcccccccCCceeecCCCccccCCCC-C---C----------
Q 014522 25 VIVGAGPSGLATAACLRDQ-----GVPFVMLERAECI-ASLWQKRTYDRLNLHLPKQFCQLPKL-Q---F---------- 84 (423)
Q Consensus 25 vIIGaG~aGl~~A~~L~~~-----g~~v~lie~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~-~---~---------- 84 (423)
+|||+|++|++++..|.++ ..+|+|||+.+.. |+.|.....+...++.+...+....- + |
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999998 3599999997664 45787765566666666554443221 1 0
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHc------CCce-eccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEE
Q 014522 85 ---PEDFPEYPTKRQFIQYLESYAEKF------EINP-RFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVV 154 (423)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vvi 154 (423)
......|+++..+-+|+.+.+++. ++.+ +...+|+++...+ +.|.+.+.+ + ..+.+|.||+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~------g-~~~~~d~VvL 151 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTAD------G-QSIRADAVVL 151 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECC------C-CEEEeCEEEE
Confidence 112346789999999988777653 3343 5577899998877 668788876 5 6889999999
Q ss_pred ccCC
Q 014522 155 ATGE 158 (423)
Q Consensus 155 AtG~ 158 (423)
|||.
T Consensus 152 a~Gh 155 (156)
T PF13454_consen 152 ATGH 155 (156)
T ss_pred CCCC
Confidence 9994
No 99
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.30 E-value=2.7e-11 Score=112.56 Aligned_cols=131 Identities=20% Similarity=0.244 Sum_probs=86.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCc-----eee------cC-C-CccccCC----CCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDR-----LNL------HL-P-KQFCQLP----KLQF 84 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~-----~~~------~~-~-~~~~~~~----~~~~ 84 (423)
+||+|||||++|+++|..|++.|.+|+|+|+...++..++...... +.. .. . ..++... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 6999999999999999999999999999999876654332210000 000 00 0 0000000 0011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 85 PEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
+........+..+.+.+.+.+.+.+++++++++|+.+...+ +.+.+.+.+ +..++++|+||+|+|.++
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~------~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRG------GEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcC------ccEEEEeCEEEECCCcch
Confidence 11111224778888999998888999999999999998776 554455543 226899999999999654
No 100
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.23 E-value=2e-10 Score=112.12 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=84.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc------ccccc----CCceeecCC---------------C
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL------WQKRT----YDRLNLHLP---------------K 74 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~------~~~~~----~~~~~~~~~---------------~ 74 (423)
..+||+||||||+|++||..|+++|++|+|+|+.+.+|.. ..... .+.+....+ .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 4689999999999999999999999999999998655431 11110 010000000 0
Q ss_pred ccccCCCC--CC--CCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeC
Q 014522 75 QFCQLPKL--QF--PEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICR 150 (423)
Q Consensus 75 ~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 150 (423)
....+... .. +........+..+..++.+.+.+.+++++.+++|+++..++ +.+.+...+ + .++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~------g-~~i~A~ 154 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEAD------G-DVIEAK 154 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcC------C-cEEECC
Confidence 00000000 00 00111123678888899999999999999999999988665 444333322 3 579999
Q ss_pred EEEEccCCC
Q 014522 151 WLVVATGEN 159 (423)
Q Consensus 151 ~vviAtG~~ 159 (423)
.||+|+|..
T Consensus 155 ~VI~A~G~~ 163 (428)
T PRK10157 155 TVILADGVN 163 (428)
T ss_pred EEEEEeCCC
Confidence 999999953
No 101
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.22 E-value=2.4e-10 Score=103.15 Aligned_cols=141 Identities=20% Similarity=0.209 Sum_probs=87.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc-cccccc-CCceeecCC-CccccCCCCCCCCCCC--CCCCH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS-LWQKRT-YDRLNLHLP-KQFCQLPKLQFPEDFP--EYPTK 94 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 94 (423)
..+||+||||||+|++||+.|++.|++|+|+|+...+|| .|.... ++...+..+ ..+..-...++..... ....+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 468999999999999999999999999999999887765 443221 111111000 0000001111111101 12356
Q ss_pred HHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEccc----CCCCCceEEEEeCEEEEccCCCC
Q 014522 95 RQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASS----AGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~----~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
..+...+.+.+.+.+++++.+++|+++..+++...+-+.+... .+...+..+++++.||+|||+++
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 7888888888889999999999999987655312222222110 00000236899999999999654
No 102
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.21 E-value=1.1e-10 Score=112.99 Aligned_cols=131 Identities=19% Similarity=0.157 Sum_probs=88.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc-c-----cCCceeec--------CCCccccCCCCC--
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK-R-----TYDRLNLH--------LPKQFCQLPKLQ-- 83 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~-~-----~~~~~~~~--------~~~~~~~~~~~~-- 83 (423)
+++||+||||||||++||+.|++.|++|+++|+...+|..... . ....+... +.......+...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 6899999999999999999999999999999998777642211 0 00001000 000111111000
Q ss_pred CCCC-CCCC-CCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 84 FPED-FPEY-PTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 84 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
+... ...+ ..+..+.+++...+.+.|.+++.++++..+..++ ....+.+.. +..++++++||.|+|.
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~--~~~~~~~~~------~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED--DGVVVGVRA------GDDEVRAKVVIDADGV 150 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC--CcEEEEEEc------CCEEEEcCEEEECCCc
Confidence 0000 1122 3688889999999999999999999999998877 443344433 2279999999999994
No 103
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.21 E-value=7.3e-11 Score=102.28 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=86.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccC---------------------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQL--------------------- 79 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~--------------------- 79 (423)
+.+|+|||+|++|++||..|+..|++|+++||...+||.......++-..+...+++..
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 35799999999999999999999999999999999998665543333332222222221
Q ss_pred -------CCC---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEE
Q 014522 80 -------PKL---QFPED--FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEY 147 (423)
Q Consensus 80 -------~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (423)
.+- +..+. +-..+....+..|+.. ++++.++++|+.+...+ +.|++++++ +....
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt-----dL~V~~~~rVt~v~~~~--~~W~l~~~~------g~~~~ 147 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT-----DLTVVLETRVTEVARTD--NDWTLHTDD------GTRHT 147 (331)
T ss_pred cccccccccCCCCCCCCCCccccCcchHHHHHHHhc-----cchhhhhhhhhhheecC--CeeEEEecC------CCccc
Confidence 111 01111 1222333444444333 78889999999999886 999999976 44789
Q ss_pred EeCEEEEccCC
Q 014522 148 ICRWLVVATGE 158 (423)
Q Consensus 148 ~~d~vviAtG~ 158 (423)
.+|.||||.=+
T Consensus 148 ~~d~vvla~PA 158 (331)
T COG3380 148 QFDDVVLAIPA 158 (331)
T ss_pred ccceEEEecCC
Confidence 99999998774
No 104
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.21 E-value=2.6e-10 Score=110.23 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=83.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCC---Ccccccc--------------cCCceeecCCCccccCCCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERA-ECI---ASLWQKR--------------TYDRLNLHLPKQFCQLPKLQ 83 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~-~~~---gg~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 83 (423)
|||+||||||+|+++|..|++.|++|+|+|+. +.. |+..... .+....+..+.... ....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVP--IKVT 78 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCce--eeec
Confidence 69999999999999999999999999999987 211 1111111 01111111111100 0011
Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccC-CCCCceEEEEeCEEEEccCCCC
Q 014522 84 FPE--DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSA-GSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 84 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~-~~~~~~~~~~~d~vviAtG~~~ 160 (423)
.+. .+.....+..+.+++.+.+.+.+++++. ++|+++...+ +.+.+++.+.. ++.+...++++|+||.|+|..+
T Consensus 79 ~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 79 IPSEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDR--DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcC--CeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 111 1112368889999999999989999864 4688887665 56666655310 0001225799999999999655
Q ss_pred C
Q 014522 161 E 161 (423)
Q Consensus 161 ~ 161 (423)
.
T Consensus 156 ~ 156 (388)
T TIGR02023 156 P 156 (388)
T ss_pred H
Confidence 4
No 105
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.21 E-value=2e-10 Score=103.32 Aligned_cols=140 Identities=24% Similarity=0.305 Sum_probs=88.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-ccccccc-CCceeecCC-CccccCCCCCCCCCCCC--CCCH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA-SLWQKRT-YDRLNLHLP-KQFCQLPKLQFPEDFPE--YPTK 94 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g-g~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 94 (423)
..+||+||||||+|+++|+.|++.|.+|+|+|+...+| +.|.... ++......+ ..+......++...... ...+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 47899999999999999999999999999999998775 4664321 111111100 00111111122111111 1256
Q ss_pred HHHHHHHHHHHHHcCCceeccceEEEEEEeCCC-CeEEEEEccc----CCCCCceEEEEeCEEEEccCCC
Q 014522 95 RQFIQYLESYAEKFEINPRFNECVQSARYDETS-GLWRVKTASS----AGSTKTEFEYICRWLVVATGEN 159 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~v~~~~~----~~~~~~~~~~~~d~vviAtG~~ 159 (423)
.++.+.+...+.+.+++++.++.|+++..+++. ...-|.+... .+.-.+...++++.||.|||..
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 788888888888999999999999999876532 1111333210 0000023689999999999953
No 106
>PLN02463 lycopene beta cyclase
Probab=99.19 E-value=2.1e-10 Score=111.60 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=85.4
Q ss_pred ccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC-----CcccccccCCceee------cCCCccccCCC-C-CC
Q 014522 18 CIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI-----ASLWQKRTYDRLNL------HLPKQFCQLPK-L-QF 84 (423)
Q Consensus 18 ~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~-----gg~~~~~~~~~~~~------~~~~~~~~~~~-~-~~ 84 (423)
....+||+||||||+|+++|..|++.|++|+|+|+.+.. .+.|... ...+.+ ..+.....+.. . ..
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 345789999999999999999999999999999986532 1232210 000000 00000000000 0 00
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 85 PEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
....-....+..+.+++.+.+.+.++.++ .++|+++...+ +.+.|++.+ + .++++|.||+|+|..+
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~d------G-~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDD------G-VKIQASLVLDATGFSR 169 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECC------C-CEEEcCEEEECcCCCc
Confidence 00111124788888888888888888864 67899988765 566677765 4 5899999999999643
No 107
>PRK08244 hypothetical protein; Provisional
Probab=99.19 E-value=4.8e-10 Score=111.82 Aligned_cols=136 Identities=21% Similarity=0.224 Sum_probs=85.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc------cccc--------ccCCceee---cCC-Ccccc---
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS------LWQK--------RTYDRLNL---HLP-KQFCQ--- 78 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg------~~~~--------~~~~~~~~---~~~-~~~~~--- 78 (423)
+.+||+||||||+|+++|..|++.|++|+|||+.+.+.. .+.. +..+.+.- ... ..+..
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 357999999999999999999999999999999754311 0000 00000000 000 00000
Q ss_pred -CCCCCCCCC--CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEc
Q 014522 79 -LPKLQFPED--FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVA 155 (423)
Q Consensus 79 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviA 155 (423)
+.....+.. ......+..+.+.+.+.+.+.+++++++++++++...+ +...+++.+.+ +..++++|+||.|
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~----g~~~i~a~~vVgA 154 (493)
T PRK08244 81 RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGPD----GLRTLTSSYVVGA 154 (493)
T ss_pred cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeCC----ccEEEEeCEEEEC
Confidence 000000111 11123567778888888888899999999999998765 55555554311 3357999999999
Q ss_pred cCCCCC
Q 014522 156 TGENAE 161 (423)
Q Consensus 156 tG~~~~ 161 (423)
+|..+.
T Consensus 155 DG~~S~ 160 (493)
T PRK08244 155 DGAGSI 160 (493)
T ss_pred CCCChH
Confidence 997663
No 108
>PRK06847 hypothetical protein; Provisional
Probab=99.18 E-value=5.9e-10 Score=107.38 Aligned_cols=134 Identities=20% Similarity=0.232 Sum_probs=87.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc----cc--cc--------cc----------CCceeecCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS----LW--QK--------RT----------YDRLNLHLPKQ 75 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg----~~--~~--------~~----------~~~~~~~~~~~ 75 (423)
+++||+|||||++|+++|..|.+.|++|+|+|+.+.+.. .. .. +. ........+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 467999999999999999999999999999998764221 00 00 00 00010000000
Q ss_pred --cccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeC
Q 014522 76 --FCQLPKLQF-PEDF--PEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICR 150 (423)
Q Consensus 76 --~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 150 (423)
...++...+ .... .....+..+.+++.+.+.+.+++++++++|++++... +.+.+.+.+ + .++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~------g-~~~~ad 153 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSD------G-TTGRYD 153 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcC------C-CEEEcC
Confidence 001100000 0000 1234678888999988888899999999999998765 566677655 4 579999
Q ss_pred EEEEccCCCCCC
Q 014522 151 WLVVATGENAER 162 (423)
Q Consensus 151 ~vviAtG~~~~~ 162 (423)
.||+|+|.++..
T Consensus 154 ~vI~AdG~~s~~ 165 (375)
T PRK06847 154 LVVGADGLYSKV 165 (375)
T ss_pred EEEECcCCCcch
Confidence 999999976644
No 109
>PRK10015 oxidoreductase; Provisional
Probab=99.17 E-value=7.5e-10 Score=107.99 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=83.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc------ccccc----CCceeecCCC------ccccC----
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL------WQKRT----YDRLNLHLPK------QFCQL---- 79 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~------~~~~~----~~~~~~~~~~------~~~~~---- 79 (423)
..+||+||||||+|++||+.|++.|++|+|+|+.+.+|.. ..... .+.+....+. ....+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 4689999999999999999999999999999998765421 11110 1111000000 00000
Q ss_pred --CCCCCCCC------CCCC-CCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeC
Q 014522 80 --PKLQFPED------FPEY-PTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICR 150 (423)
Q Consensus 80 --~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 150 (423)
....+... ...+ ..+..+..++.+.+.+.+++++.+++|+.+..++ +.+.....+ + ..+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~------~-~~i~A~ 154 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAG------D-DILEAN 154 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeC------C-eEEECC
Confidence 00001000 0112 3678888889898999999999999999987654 443322222 3 589999
Q ss_pred EEEEccCCC
Q 014522 151 WLVVATGEN 159 (423)
Q Consensus 151 ~vviAtG~~ 159 (423)
.||+|+|..
T Consensus 155 ~VI~AdG~~ 163 (429)
T PRK10015 155 VVILADGVN 163 (429)
T ss_pred EEEEccCcc
Confidence 999999953
No 110
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.16 E-value=4.9e-10 Score=109.43 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=87.7
Q ss_pred chhhccccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----c----cccc--------ccCCcee------
Q 014522 12 DFLSRRCIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA----S----LWQK--------RTYDRLN------ 69 (423)
Q Consensus 12 ~~~~~~~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g----g----~~~~--------~~~~~~~------ 69 (423)
|-++++.+..+||+|||||++|+++|..|++.|++|+|+|+.+... | .+.. +.++.+.
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 88 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKF 88 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCc
Confidence 3445566678999999999999999999999999999999976432 1 0100 0111110
Q ss_pred ----ecCCC--ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCC
Q 014522 70 ----LHLPK--QFCQLPKLQFPEDFPEY-PTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGST 141 (423)
Q Consensus 70 ----~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~ 141 (423)
..... ....+...........+ .....+.+.+.+.+.+. +++++++++|+++..++ +.+.|++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~---- 162 (415)
T PRK07364 89 RQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIE---- 162 (415)
T ss_pred cEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccC----
Confidence 00000 00000100000010111 12345666666666664 68889999999998765 5666776531
Q ss_pred CceEEEEeCEEEEccCCCCCC
Q 014522 142 KTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 142 ~~~~~~~~d~vviAtG~~~~~ 162 (423)
++..++++|.||.|+|..+.-
T Consensus 163 ~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 163 GKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred CcceEEeeeEEEEeCCCCchh
Confidence 132579999999999976643
No 111
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.13 E-value=8.3e-10 Score=92.99 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=86.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-ccccccc-CCceeecCCCc-cccCCCCCCCCCCCCC--CCHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA-SLWQKRT-YDRLNLHLPKQ-FCQLPKLQFPEDFPEY--PTKR 95 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g-g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 95 (423)
..||+||||||+||+||+.|++.|++|+|+|++-.+| |.|--++ ++.+....+.. +..-...++.+.-..+ ....
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 5699999999999999999999999999999987775 5786643 33333332221 1111122222221212 2555
Q ss_pred HHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEc----ccCCCCCceEEEEeCEEEEccCC
Q 014522 96 QFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTA----SSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~----~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
++..-+...+-+.+.+++..+.|+++-..++...--|.++ ...+.-=.+..+++++||-|||+
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 6666666677777999999999999887764211111111 00000001257899999999995
No 112
>PRK06834 hypothetical protein; Provisional
Probab=99.12 E-value=1.3e-09 Score=107.87 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=85.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-------ccccc--------ccCCceee-----c-CCCccccC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA-------SLWQK--------RTYDRLNL-----H-LPKQFCQL 79 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g-------g~~~~--------~~~~~~~~-----~-~~~~~~~~ 79 (423)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+. +.+.. +.++.+.- . .......+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 5799999999999999999999999999999876421 11111 00111100 0 00000001
Q ss_pred CCCCCCC--CCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccC
Q 014522 80 PKLQFPE--DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATG 157 (423)
Q Consensus 80 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG 157 (423)
.....+. .+........+...+.+.+++.+++++++++|+++..++ +.+.+++.+ + .++++|+||.|+|
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~------g-~~i~a~~vVgADG 153 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSD------G-RTLRAQYLVGCDG 153 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECC------C-CEEEeCEEEEecC
Confidence 0001111 111123456777788888888899999999999998876 566666644 4 5899999999999
Q ss_pred CCCC
Q 014522 158 ENAE 161 (423)
Q Consensus 158 ~~~~ 161 (423)
.++.
T Consensus 154 ~~S~ 157 (488)
T PRK06834 154 GRSL 157 (488)
T ss_pred CCCC
Confidence 7664
No 113
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.12 E-value=7.7e-10 Score=107.05 Aligned_cols=129 Identities=20% Similarity=0.160 Sum_probs=83.8
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCc----eeec------CCC-ccccCCCCCCCCCCCC-
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDR----LNLH------LPK-QFCQLPKLQFPEDFPE- 90 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~----~~~~------~~~-~~~~~~~~~~~~~~~~- 90 (423)
||+|||||++|+++|..|++.|++|+|+|+.+..|+.+....+.. ..+. ... ..+..+........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999999999999999877765332221111 1000 000 0000010000001111
Q ss_pred CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 91 YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
...+..+.+++.+.+.+.++.++ .++|..+.... ...+.|++.+ + .+++++.||+|+|.++
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~------g-~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAG------G-QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCC------C-CEEEeCEEEECCCCch
Confidence 24678888999888888888764 66788887652 2566677765 4 5899999999999654
No 114
>PRK08013 oxidoreductase; Provisional
Probab=99.12 E-value=8.2e-10 Score=107.16 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=84.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---cc---ccc--------------ccCCceeec--CCCcccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA---SL---WQK--------------RTYDRLNLH--LPKQFCQ 78 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g---g~---~~~--------------~~~~~~~~~--~~~~~~~ 78 (423)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+. |. .+. +.++.+... .+.....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 5799999999999999999999999999999876421 10 000 111111100 0000000
Q ss_pred C------CCCCCCC---CCC---CCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceE
Q 014522 79 L------PKLQFPE---DFP---EYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEF 145 (423)
Q Consensus 79 ~------~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~ 145 (423)
+ ....+.. ..+ ....+..+...+.+.+.+. +++++++++|++++.++ ....+++.+ + +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~------g-~ 153 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKD------G-S 153 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcC------C-C
Confidence 0 0000100 111 1245777888888777775 78899999999998765 455566654 4 5
Q ss_pred EEEeCEEEEccCCCCCC
Q 014522 146 EYICRWLVVATGENAER 162 (423)
Q Consensus 146 ~~~~d~vviAtG~~~~~ 162 (423)
++++|+||.|.|.+|.-
T Consensus 154 ~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 154 MLTARLVVGADGANSWL 170 (400)
T ss_pred EEEeeEEEEeCCCCcHH
Confidence 89999999999976643
No 115
>PLN02697 lycopene epsilon cyclase
Probab=99.11 E-value=1.1e-09 Score=108.17 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=83.6
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC---CcccccccCCceeec------CCCccccCCCC-CCCCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI---ASLWQKRTYDRLNLH------LPKQFCQLPKL-QFPEDF 88 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~---gg~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~ 88 (423)
+..+||+||||||+|+++|..|++.|++|+++|+.... .|.|... ...+.+. .+......+.. ......
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~ 184 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR 184 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence 34789999999999999999999999999999986332 2445321 1111100 00000000000 000000
Q ss_pred C-CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEE-EEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 89 P-EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRV-KTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 89 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v-~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
+ ....+..+.+.+.+.+.+.++.+ ++++|+.+.... +.+.+ ++.+ + .++.++.||+|+|.++
T Consensus 185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~d------G-~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 185 AYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACED------G-RVIPCRLATVASGAAS 248 (529)
T ss_pred cccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcC------C-cEEECCEEEECCCcCh
Confidence 1 12578888888888888888886 778899987654 33333 3333 4 6899999999999766
No 116
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.11 E-value=5.1e-10 Score=108.93 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=84.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-------------ccccc---------ccCCceee--cCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA-------------SLWQK---------RTYDRLNL--HLPKQ 75 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g-------------g~~~~---------~~~~~~~~--~~~~~ 75 (423)
|.+||+|||||++|+++|..|++.|++|+|+|+.+... ..... +.++.+.- ..+..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 35799999999999999999999999999999875210 00000 01111110 00000
Q ss_pred ---cccCCC---CCCCC------CCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCc
Q 014522 76 ---FCQLPK---LQFPE------DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKT 143 (423)
Q Consensus 76 ---~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~ 143 (423)
+..... ..+.. .......+..+.+.+.+.+.+.+++++.+++|++++... +.+.|++.+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~------g 152 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLAD------G 152 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECC------C
Confidence 000000 00100 001123456677777777777788999999999998765 567777765 4
Q ss_pred eEEEEeCEEEEccCCCCCC
Q 014522 144 EFEYICRWLVVATGENAER 162 (423)
Q Consensus 144 ~~~~~~d~vviAtG~~~~~ 162 (423)
.++++|.||.|+|.++..
T Consensus 153 -~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 153 -RQLRAPLVVAADGANSAV 170 (405)
T ss_pred -CEEEeCEEEEecCCCchh
Confidence 579999999999976643
No 117
>PRK06184 hypothetical protein; Provisional
Probab=99.11 E-value=1.8e-09 Score=107.92 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=84.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc------cccc--------c----------cCCceeecCCCc-
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS------LWQK--------R----------TYDRLNLHLPKQ- 75 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg------~~~~--------~----------~~~~~~~~~~~~- 75 (423)
++||+||||||+|+++|..|+++|++|+|+|+.+.+.. .+.. + .+..........
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 57999999999999999999999999999999764421 1100 0 001111000000
Q ss_pred cccCCCC----CCCC---CCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEE
Q 014522 76 FCQLPKL----QFPE---DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYI 148 (423)
Q Consensus 76 ~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (423)
....... ..+. .......+..+...+.+.+.+.+++++++++|++++.++ +.+.+++.... +..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~----~~~~i~ 156 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPA----GEETVR 156 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCC----CeEEEE
Confidence 0000000 0000 001123456677778888888899999999999998766 45555553211 226899
Q ss_pred eCEEEEccCCCCC
Q 014522 149 CRWLVVATGENAE 161 (423)
Q Consensus 149 ~d~vviAtG~~~~ 161 (423)
+|+||.|+|.++.
T Consensus 157 a~~vVgADG~~S~ 169 (502)
T PRK06184 157 ARYLVGADGGRSF 169 (502)
T ss_pred eCEEEECCCCchH
Confidence 9999999998663
No 118
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.09 E-value=1.1e-09 Score=106.52 Aligned_cols=132 Identities=23% Similarity=0.256 Sum_probs=85.7
Q ss_pred cCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCC------c--cccc--------ccCCce----------eecC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIA------S--LWQK--------RTYDRL----------NLHL 72 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~g------g--~~~~--------~~~~~~----------~~~~ 72 (423)
++||+|||||++|+++|..|++.| ++|+|+|+.+... + .+.. +.++.+ ....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 579999999999999999999995 9999999975321 0 0000 001111 0000
Q ss_pred CCc-------cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCce
Q 014522 73 PKQ-------FCQLPKLQ-FPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTE 144 (423)
Q Consensus 73 ~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~ 144 (423)
... ...+.... ....+.....+..+...+.+.+.+.+++++++++|++++.+. +.+.+++.+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~------g- 151 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSD------G- 151 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECC------C-
Confidence 000 00000000 000111234778888888888888899999999999998766 666677654 4
Q ss_pred EEEEeCEEEEccCCCCC
Q 014522 145 FEYICRWLVVATGENAE 161 (423)
Q Consensus 145 ~~~~~d~vviAtG~~~~ 161 (423)
.++.+|+||.|+|.++.
T Consensus 152 ~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 SVLEARLLVAADGARSK 168 (403)
T ss_pred CEEEeCEEEEcCCCChH
Confidence 57999999999996554
No 119
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.09 E-value=1.3e-09 Score=104.61 Aligned_cols=120 Identities=23% Similarity=0.261 Sum_probs=81.5
Q ss_pred CeEEECCChHHHHHHHHH--HHcCCCEEEEecCCCC--Cc--ccccc-------------cCCceeecCCCccccCCCCC
Q 014522 23 GPVIVGAGPSGLATAACL--RDQGVPFVMLERAECI--AS--LWQKR-------------TYDRLNLHLPKQFCQLPKLQ 83 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L--~~~g~~v~lie~~~~~--gg--~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 83 (423)
||+|||||+||+++|..| ++.|.+|+|||+++.. +. +|... .|+...+..+.....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~----- 75 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRI----- 75 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceE-----
Confidence 899999999999999999 6678999999987765 22 33221 111111111110000
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 84 FPEDFP-EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
....+ ....+..+.+++.+.+.. +...+++++|++++... ..+.|++.+ | .+++|+.||.|+|.
T Consensus 76 -~~~~~Y~~i~~~~f~~~l~~~~~~-~~~~~~~~~V~~i~~~~--~~~~v~~~~------g-~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 76 -LIDYPYCMIDRADFYEFLLERAAA-GGVIRLNARVTSIEETG--DGVLVVLAD------G-RTIRARVVVDARGP 140 (374)
T ss_pred -EcccceEEEEHHHHHHHHHHHhhh-CCeEEEccEEEEEEecC--ceEEEEECC------C-CEEEeeEEEECCCc
Confidence 00101 124788899998888884 44568899999999877 555577766 5 59999999999994
No 120
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.09 E-value=3.2e-09 Score=106.95 Aligned_cols=138 Identities=22% Similarity=0.262 Sum_probs=87.8
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------cc----------CCceeecCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK--------------RT----------YDRLNLHLPK 74 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------------~~----------~~~~~~~~~~ 74 (423)
.+.+||+||||||+|+++|..|++.|++|+|+|+.+.+....+. +. ..........
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 45789999999999999999999999999999998654321111 00 0111110000
Q ss_pred --ccccCCCCCCC--CCCC--CCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEE
Q 014522 75 --QFCQLPKLQFP--EDFP--EYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEY 147 (423)
Q Consensus 75 --~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (423)
....+.. +.. ..++ ....+..+...+.+.+.+. +++++++++|+++..++ +.+.+++.+.++ ...++
T Consensus 88 g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~~G---~~~~i 161 (538)
T PRK06183 88 GRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDADG---QRETV 161 (538)
T ss_pred CCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcCCC---CEEEE
Confidence 0001110 000 0111 1224566777777777665 88999999999998876 556676653221 24689
Q ss_pred EeCEEEEccCCCCCC
Q 014522 148 ICRWLVVATGENAER 162 (423)
Q Consensus 148 ~~d~vviAtG~~~~~ 162 (423)
++|+||.|+|..|..
T Consensus 162 ~ad~vVgADG~~S~v 176 (538)
T PRK06183 162 RARYVVGCDGANSFV 176 (538)
T ss_pred EEEEEEecCCCchhH
Confidence 999999999976643
No 121
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.08 E-value=1.9e-09 Score=105.47 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=83.4
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----CcccccccCC--------------ceeecCCCcc-ccC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI----ASLWQKRTYD--------------RLNLHLPKQF-CQL 79 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~----gg~~~~~~~~--------------~~~~~~~~~~-~~~ 79 (423)
.+.+||+||||||+|+++|..|++.|++|+|+|+.... |+........ .+.+..+... ..+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~ 116 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 116 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence 46899999999999999999999999999999987421 1110000000 0111111100 000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCC-CCeEEEEEcccCC--CCCceEEEEeCEEEEcc
Q 014522 80 PKLQFPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDET-SGLWRVKTASSAG--STKTEFEYICRWLVVAT 156 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~d~vviAt 156 (423)
.....+..+.....+..+..++.+.+.+.|++++.+ .+++++.... .+.+.|++.+... +.+...++++|.||.|+
T Consensus 117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred cccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 000000011112588899999999999999998654 5777764321 2445565543100 00122589999999999
Q ss_pred CCCC
Q 014522 157 GENA 160 (423)
Q Consensus 157 G~~~ 160 (423)
|..+
T Consensus 196 G~~S 199 (450)
T PLN00093 196 GANS 199 (450)
T ss_pred Ccch
Confidence 9654
No 122
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.08 E-value=5.6e-10 Score=106.47 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=82.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------ccC----------C--ceeecCC--
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK--------------RTY----------D--RLNLHLP-- 73 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------------~~~----------~--~~~~~~~-- 73 (423)
+||+|||||++|+++|..|+++|++|+|||+.+......+. +.. . .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 58999999999999999999999999999998643211100 000 0 0000000
Q ss_pred ---------CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCce
Q 014522 74 ---------KQFCQLPKLQFPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTE 144 (423)
Q Consensus 74 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~ 144 (423)
.....+. ............+..+...+.+.+++.+++++++++++++..+. ....+.+....+ +..
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~--g~~ 156 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGED--GEE 156 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCT--CEE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccC--Cce
Confidence 0000000 00000111123678899999999999999999999999998877 444444444321 133
Q ss_pred EEEEeCEEEEccCCCCC
Q 014522 145 FEYICRWLVVATGENAE 161 (423)
Q Consensus 145 ~~~~~d~vviAtG~~~~ 161 (423)
+++++|.||.|.|.+|.
T Consensus 157 ~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 157 ETIEADLVVGADGAHSK 173 (356)
T ss_dssp EEEEESEEEE-SGTT-H
T ss_pred eEEEEeeeecccCcccc
Confidence 58999999999997663
No 123
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.07 E-value=2e-09 Score=104.23 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=86.1
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----c-------cccc--------ccCCceee--cCCCc--
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA----S-------LWQK--------RTYDRLNL--HLPKQ-- 75 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g----g-------~~~~--------~~~~~~~~--~~~~~-- 75 (423)
..++||+|||||++|+++|..|+++|++|+|+|+.+.+. + .+.. +.++.+.- ..+..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 356899999999999999999999999999999975321 1 0000 01111100 00000
Q ss_pred ---------cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceE
Q 014522 76 ---------FCQLPKLQF-PEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEF 145 (423)
Q Consensus 76 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~ 145 (423)
...+..... +........+..+.+.+.+.+.+.+++++.+++|+++..++ +.+.+++.+ + .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~------g-~ 154 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDD------G-R 154 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECC------C-C
Confidence 000000000 00011123567788888888888899999999999998765 566677654 4 5
Q ss_pred EEEeCEEEEccCCCCC
Q 014522 146 EYICRWLVVATGENAE 161 (423)
Q Consensus 146 ~~~~d~vviAtG~~~~ 161 (423)
++++|.||.|+|.++.
T Consensus 155 ~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 155 RLEAALAIAADGAAST 170 (392)
T ss_pred EEEeCEEEEecCCCch
Confidence 7999999999997653
No 124
>PRK07190 hypothetical protein; Provisional
Probab=99.07 E-value=2.5e-09 Score=105.81 Aligned_cols=132 Identities=16% Similarity=0.171 Sum_probs=84.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------ccCCcee-----ec-----CCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK--------------RTYDRLN-----LH-----LPKQ 75 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------------~~~~~~~-----~~-----~~~~ 75 (423)
..+||+||||||+|+++|..|+++|++|+|||+.+.+...-+. +.++.+. +. ....
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 3579999999999999999999999999999998654311110 0000000 00 0000
Q ss_pred cccCCC--C-CCCCC-CC--CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEe
Q 014522 76 FCQLPK--L-QFPED-FP--EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYIC 149 (423)
Q Consensus 76 ~~~~~~--~-~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (423)
+..... . ..+.. .+ .......+...+.+.+.+.+++++++++|+++..++ +.+.+++.+ + +++++
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~------g-~~v~a 154 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSN------G-ERIQS 154 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECC------C-cEEEe
Confidence 000000 0 00000 00 112455667778888888899999999999998876 555566544 4 58999
Q ss_pred CEEEEccCCCC
Q 014522 150 RWLVVATGENA 160 (423)
Q Consensus 150 d~vviAtG~~~ 160 (423)
++||.|+|..+
T Consensus 155 ~~vVgADG~~S 165 (487)
T PRK07190 155 RYVIGADGSRS 165 (487)
T ss_pred CEEEECCCCCH
Confidence 99999999755
No 125
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.07 E-value=1.8e-09 Score=104.27 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=86.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCCC--c---cccc---------cc-----------CCceeecCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERA-ECIA--S---LWQK---------RT-----------YDRLNLHLPK 74 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~-~~~g--g---~~~~---------~~-----------~~~~~~~~~~ 74 (423)
++||+|||||++|+++|..|++.|++|+|||+. ...- + .... +. +.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 679999999999999999999999999999997 2110 1 0000 00 0000111000
Q ss_pred -ccccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcC-CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCE
Q 014522 75 -QFCQLPKLQFPED-FPEYPTKRQFIQYLESYAEKFE-INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRW 151 (423)
Q Consensus 75 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 151 (423)
....+........ ......+..+...+.+.+.+.+ ++++++++|+.++.++ ....+++.. + | +++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~-d----G-~~~~a~l 153 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSF-D----G-ETLDADL 153 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcC-C----C-cEEecCE
Confidence 0111111111111 1122378888888888888776 8999999999999887 555577773 2 5 4999999
Q ss_pred EEEccCCCCC
Q 014522 152 LVVATGENAE 161 (423)
Q Consensus 152 vviAtG~~~~ 161 (423)
||.|.|.+|.
T Consensus 154 lVgADG~~S~ 163 (387)
T COG0654 154 LVGADGANSA 163 (387)
T ss_pred EEECCCCchH
Confidence 9999997664
No 126
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.05 E-value=1.2e-09 Score=92.67 Aligned_cols=138 Identities=20% Similarity=0.200 Sum_probs=79.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc-ccccc-cCCceeecCCCcc-ccCCCCCCCCCCCC--CCCH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS-LWQKR-TYDRLNLHLPKQF-CQLPKLQFPEDFPE--YPTK 94 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~ 94 (423)
..+||+||||||+|++||+.|++.|++|+++|++..+|| .|... .++.+....+... ..--..++.+.-.. ..+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 468999999999999999999999999999999987765 67664 3445554443221 11111111111111 1366
Q ss_pred HHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEE-EEEc--c--cCCCCCceEEEEeCEEEEccCC
Q 014522 95 RQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWR-VKTA--S--SAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-v~~~--~--~~~~~~~~~~~~~d~vviAtG~ 158 (423)
.++...+...+-+.++.++-.+.|+++-..++ .+.. |.++ . ..+.-=++..++++.||-|||+
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 77777777777778999999999999877763 2211 1111 0 0000002368999999999995
No 127
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=2.4e-09 Score=102.89 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=83.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC-------C-c--cccc--------ccCCc----------eeecC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI-------A-S--LWQK--------RTYDR----------LNLHL 72 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~-------g-g--~~~~--------~~~~~----------~~~~~ 72 (423)
++||+|||||++|+++|..|++.|++|+|+|+.+.. + + .+.. +.++. +....
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 479999999999999999999999999999986311 1 1 0000 01111 11100
Q ss_pred CCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEe
Q 014522 73 PKQ--FCQLPKLQFPEDFPEYPTKRQFIQYLESYAEKFE-INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYIC 149 (423)
Q Consensus 73 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (423)
... ...+.. ...........+..+...+.+.+.+.+ +.++.+++++++..+. +.+.+++.+ + ++++
T Consensus 81 ~~g~~~~~~~~-~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~------~--~~~a 149 (374)
T PRK06617 81 NKASEILDLRN-DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDD------K--QIKC 149 (374)
T ss_pred CCCceEEEecC-CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcC------C--EEee
Confidence 000 001100 000001112468888888888877775 7788899999988766 556677643 3 8999
Q ss_pred CEEEEccCCCCCC
Q 014522 150 RWLVVATGENAER 162 (423)
Q Consensus 150 d~vviAtG~~~~~ 162 (423)
|.||.|.|..|.-
T Consensus 150 dlvIgADG~~S~v 162 (374)
T PRK06617 150 NLLIICDGANSKV 162 (374)
T ss_pred CEEEEeCCCCchh
Confidence 9999999976654
No 128
>PRK11445 putative oxidoreductase; Provisional
Probab=99.05 E-value=4.2e-09 Score=100.29 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=81.7
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC---------CcccccccC---CceeecCCC------ccccCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI---------ASLWQKRTY---DRLNLHLPK------QFCQLPKL 82 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~---------gg~~~~~~~---~~~~~~~~~------~~~~~~~~ 82 (423)
++||+||||||+|+++|..|++. ++|+++|+.+.. |+....... ..+.+..+. ..+.....
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 57999999999999999999999 999999987632 211111000 000000000 00000000
Q ss_pred CCC------CCCCC-CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEc
Q 014522 83 QFP------EDFPE-YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVA 155 (423)
Q Consensus 83 ~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviA 155 (423)
.+. ...+. ...+..+.+.+.+. ...++++++++.|+++...+ +.|.|++.. + +...++++|+||.|
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~-~---g~~~~i~a~~vV~A 152 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWRED--DGYHVIFRA-D---GWEQHITARYLVGA 152 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcC--CEEEEEEec-C---CcEEEEEeCEEEEC
Confidence 000 01011 25678887877764 45678899999999998765 667777532 1 12247999999999
Q ss_pred cCCCCC
Q 014522 156 TGENAE 161 (423)
Q Consensus 156 tG~~~~ 161 (423)
+|..+.
T Consensus 153 dG~~S~ 158 (351)
T PRK11445 153 DGANSM 158 (351)
T ss_pred CCCCcH
Confidence 996554
No 129
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.05 E-value=4.2e-09 Score=101.89 Aligned_cols=138 Identities=16% Similarity=0.196 Sum_probs=80.9
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc----cC--------------CceeecCCCcc-ccCCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR----TY--------------DRLNLHLPKQF-CQLPKL 82 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~----~~--------------~~~~~~~~~~~-~~~~~~ 82 (423)
+||+||||||+|++||..|++.|++|+|+|+....+..+... .. .......+... ..+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999875432211110 00 01111111110 000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEe-CCCCeEEEEEcccCC--CCCceEEEEeCEEEEccCCC
Q 014522 83 QFPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYD-ETSGLWRVKTASSAG--STKTEFEYICRWLVVATGEN 159 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~~v~~~~~~~--~~~~~~~~~~d~vviAtG~~ 159 (423)
..+..+.....+..+..++.+.+.+.|++++.++ +..+... ...+.+.|+....+. ..+...+++|++||.|+|..
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 0001111235788889999999999999986664 7666432 122445565432110 00122579999999999954
Q ss_pred C
Q 014522 160 A 160 (423)
Q Consensus 160 ~ 160 (423)
+
T Consensus 160 S 160 (398)
T TIGR02028 160 S 160 (398)
T ss_pred h
Confidence 4
No 130
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.04 E-value=2e-09 Score=104.13 Aligned_cols=133 Identities=23% Similarity=0.272 Sum_probs=83.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc-----cccc--------ccCCc----------eeecCCCc-
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS-----LWQK--------RTYDR----------LNLHLPKQ- 75 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg-----~~~~--------~~~~~----------~~~~~~~~- 75 (423)
..+||+|||||++|+++|..|++.|++|+|||+.+..+. .+.. +.++. +.......
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 357999999999999999999999999999999764321 1100 01111 11100000
Q ss_pred cccCCCCCC-----CCCCCC-CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEe
Q 014522 76 FCQLPKLQF-----PEDFPE-YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYIC 149 (423)
Q Consensus 76 ~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (423)
....+...+ ...... ...+..+.+.+.+.+.+++...+++++|+++...+ +.+.|++.+ + ..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~------g-~~~~a 156 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLAD------G-TTLSA 156 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECC------C-CEEEE
Confidence 000000000 000011 23567777777777777654448899999998765 667777765 4 57999
Q ss_pred CEEEEccCCCCC
Q 014522 150 RWLVVATGENAE 161 (423)
Q Consensus 150 d~vviAtG~~~~ 161 (423)
|.||.|+|.++.
T Consensus 157 ~~vI~AdG~~S~ 168 (388)
T PRK07494 157 RLVVGADGRNSP 168 (388)
T ss_pred eEEEEecCCCch
Confidence 999999997653
No 131
>PRK06185 hypothetical protein; Provisional
Probab=99.04 E-value=3.5e-09 Score=103.14 Aligned_cols=137 Identities=18% Similarity=0.289 Sum_probs=84.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC-----Cccccc---------ccCCce-----------eecCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI-----ASLWQK---------RTYDRL-----------NLHLP 73 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~-----gg~~~~---------~~~~~~-----------~~~~~ 73 (423)
.+.+||+|||||++|+++|..|++.|++|+|+|+.+.. +..+.. +.++.+ .....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 46789999999999999999999999999999987532 111111 111111 00000
Q ss_pred Cc-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeE-EEEEcccCCCCCceEEEE
Q 014522 74 KQ-F--CQLPKLQFPEDFPEYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLW-RVKTASSAGSTKTEFEYI 148 (423)
Q Consensus 74 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~-~v~~~~~~~~~~~~~~~~ 148 (423)
.. . ..+.....+..+..+..+..+.+.+.+.+.+. +++++.+++|+++..++ +.. .|.+...+ +..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~----g~~~i~ 157 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPD----GPGEIR 157 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCC----CcEEEE
Confidence 00 0 01111111111112346677888887777664 78889999999998765 332 23333211 435799
Q ss_pred eCEEEEccCCCCC
Q 014522 149 CRWLVVATGENAE 161 (423)
Q Consensus 149 ~d~vviAtG~~~~ 161 (423)
+|.||.|+|.++.
T Consensus 158 a~~vI~AdG~~S~ 170 (407)
T PRK06185 158 ADLVVGADGRHSR 170 (407)
T ss_pred eCEEEECCCCchH
Confidence 9999999997663
No 132
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.02 E-value=9.3e-09 Score=103.88 Aligned_cols=148 Identities=20% Similarity=0.304 Sum_probs=90.2
Q ss_pred ccccchhhccc--cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------ccCCcee--
Q 014522 8 VNHEDFLSRRC--IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK--------------RTYDRLN-- 69 (423)
Q Consensus 8 ~~~~~~~~~~~--~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------------~~~~~~~-- 69 (423)
.++-++.|... ++.+||+||||||+|+++|..|+++|++|+|||+.+......+. +..+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~ 87 (547)
T PRK08132 8 FPYRPHADQDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDK 87 (547)
T ss_pred ccCCCCccccCCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhh
Confidence 34444555422 35789999999999999999999999999999998754221110 0011000
Q ss_pred --------e-cCCCccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcc
Q 014522 70 --------L-HLPKQFCQLPKLQFP-EDFPEY--PTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTAS 136 (423)
Q Consensus 70 --------~-~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~ 136 (423)
. ........+...+.. ..++.+ ..+..+..++.+.+.+. +++++++++|+++..+. +.+.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~ 165 (547)
T PRK08132 88 GVSWNVGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVET 165 (547)
T ss_pred CceeeceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEEC
Confidence 0 000001111100000 011111 35667778888877775 68899999999998776 555555543
Q ss_pred cCCCCCceEEEEeCEEEEccCCCCC
Q 014522 137 SAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 137 ~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
.+ +..++++|+||.|+|..+.
T Consensus 166 ~~----g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 166 PD----GPYTLEADWVIACDGARSP 186 (547)
T ss_pred CC----CcEEEEeCEEEECCCCCcH
Confidence 21 3357999999999997653
No 133
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.02 E-value=3.1e-09 Score=102.86 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=83.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---ccccc----------------ccCCceeec--CCCcccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA---SLWQK----------------RTYDRLNLH--LPKQFCQ 78 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g---g~~~~----------------~~~~~~~~~--~~~~~~~ 78 (423)
+.+||+|||||++|+++|..|++.|++|+|+|+.+... ..|.. +.++.+... .+.....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 57899999999999999999999999999999986542 12221 000100000 0000000
Q ss_pred --------CCCCCCCCCCCC---CCCHHHHHHHHHHHHHHcC-CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEE
Q 014522 79 --------LPKLQFPEDFPE---YPTKRQFIQYLESYAEKFE-INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFE 146 (423)
Q Consensus 79 --------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (423)
+.........+. ...+..+.+.+.+.+.+.+ ++++ +++|+++...+ +.+.|++.+ + .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~------g-~~ 153 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLAD------G-QV 153 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECC------C-CE
Confidence 000000001111 1246778888878787776 7777 88899987665 566677765 4 57
Q ss_pred EEeCEEEEccCCCCC
Q 014522 147 YICRWLVVATGENAE 161 (423)
Q Consensus 147 ~~~d~vviAtG~~~~ 161 (423)
+++|+||.|+|.++.
T Consensus 154 ~~a~~vI~adG~~S~ 168 (388)
T PRK07608 154 LRADLVVGADGAHSW 168 (388)
T ss_pred EEeeEEEEeCCCCch
Confidence 999999999997654
No 134
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.02 E-value=2.6e-09 Score=103.43 Aligned_cols=133 Identities=20% Similarity=0.226 Sum_probs=83.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----Cccccc----------------ccCCceee--cCC----
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI----ASLWQK----------------RTYDRLNL--HLP---- 73 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~----gg~~~~----------------~~~~~~~~--~~~---- 73 (423)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. ++.+.. +.++.+.. ..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 4689999999999999999999999999999987521 110000 11111100 000
Q ss_pred ------CccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceE
Q 014522 74 ------KQFCQLPKLQFPE-DFPEYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEF 145 (423)
Q Consensus 74 ------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~ 145 (423)
.....+....... ......++..+.+.+.+.+.+. +++++.+++|+++...+ +.+.|++.+ + .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~------g-~ 154 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLAD------G-E 154 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECC------C-C
Confidence 0000000000000 0011235677777777777666 88888999999987765 567677655 4 5
Q ss_pred EEEeCEEEEccCCCCC
Q 014522 146 EYICRWLVVATGENAE 161 (423)
Q Consensus 146 ~~~~d~vviAtG~~~~ 161 (423)
++++|.||.|+|.++.
T Consensus 155 ~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 155 EIQAKLVIGADGANSQ 170 (391)
T ss_pred EEEeCEEEEeCCCCch
Confidence 7999999999997664
No 135
>PRK09126 hypothetical protein; Provisional
Probab=99.02 E-value=4.1e-09 Score=102.18 Aligned_cols=133 Identities=22% Similarity=0.228 Sum_probs=80.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC--------Cc---cccc--------ccCCceeec--CCC-c--
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI--------AS---LWQK--------RTYDRLNLH--LPK-Q-- 75 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~--------gg---~~~~--------~~~~~~~~~--~~~-~-- 75 (423)
|.+||+||||||+|+++|..|+++|++|+|+|+.+.+ |. .+.. +.++.+... .+. .
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 4689999999999999999999999999999997642 11 1100 111111000 000 0
Q ss_pred cccCC---CCCCCC------CCCCCCCHHHHHHHHHHHH-HHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceE
Q 014522 76 FCQLP---KLQFPE------DFPEYPTKRQFIQYLESYA-EKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEF 145 (423)
Q Consensus 76 ~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~ 145 (423)
+..-. ...++. .......+..+...+.+.+ +..+++++++++|+++...+ +.+.|++.+ + .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~------g-~ 152 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLAN------G-R 152 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcC------C-C
Confidence 00000 001110 0011124455555544444 34589999999999998765 566677654 4 5
Q ss_pred EEEeCEEEEccCCCCC
Q 014522 146 EYICRWLVVATGENAE 161 (423)
Q Consensus 146 ~~~~d~vviAtG~~~~ 161 (423)
++++|+||.|+|..+.
T Consensus 153 ~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 153 RLTARLLVAADSRFSA 168 (392)
T ss_pred EEEeCEEEEeCCCCch
Confidence 8999999999996543
No 136
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.99 E-value=5.4e-09 Score=101.03 Aligned_cols=130 Identities=22% Similarity=0.230 Sum_probs=83.6
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc--------ccc-----------ccCCceee-c-CCC-c--ccc
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL--------WQK-----------RTYDRLNL-H-LPK-Q--FCQ 78 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~--------~~~-----------~~~~~~~~-~-~~~-~--~~~ 78 (423)
||+|||||++|+++|..|+++|++|+|+|+.+.++.. ... +..+.+.. . .+. . ++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999998754210 000 01111110 0 000 0 000
Q ss_pred CCC---CCCC--C-C---CCCCCCHHHHHHHHHHHHHHcC-CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEE
Q 014522 79 LPK---LQFP--E-D---FPEYPTKRQFIQYLESYAEKFE-INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYI 148 (423)
Q Consensus 79 ~~~---~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (423)
-.. ..++ . . ......+..+.+.+.+.+.+.+ ++++.+++|+++.... +.+.+++.+ + .++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~------g-~~~~ 151 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDD------G-QQLR 151 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECC------C-CEEE
Confidence 000 0011 0 0 0112456778888888888877 8899999999998765 666676655 4 5799
Q ss_pred eCEEEEccCCCCC
Q 014522 149 CRWLVVATGENAE 161 (423)
Q Consensus 149 ~d~vviAtG~~~~ 161 (423)
+|.||.|+|..+.
T Consensus 152 ~~~vi~adG~~S~ 164 (385)
T TIGR01988 152 ARLLVGADGANSK 164 (385)
T ss_pred eeEEEEeCCCCCH
Confidence 9999999997653
No 137
>PRK06753 hypothetical protein; Provisional
Probab=98.99 E-value=6e-09 Score=100.29 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=79.5
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc------ccc--------ccC----------CceeecCCCcccc
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL------WQK--------RTY----------DRLNLHLPKQFCQ 78 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~------~~~--------~~~----------~~~~~~~~~~~~~ 78 (423)
||+|||||++|+++|..|++.|++++|+|+.+.+... +.. +.. ..+....+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 7999999999999999999999999999998654211 000 000 00000000000 0
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccC
Q 014522 79 LPKLQFPED-FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATG 157 (423)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG 157 (423)
+....+... .....++..+.+.+.+.+. ...++++++|++++.++ +.+.+++.+ + .++.+|.||.|.|
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~------g-~~~~~~~vigadG 149 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFAD------G-ESEAFDLCIGADG 149 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECC------C-CEEecCEEEECCC
Confidence 000011101 1112467777777766544 34688999999998655 666677665 4 5789999999999
Q ss_pred CCCC
Q 014522 158 ENAE 161 (423)
Q Consensus 158 ~~~~ 161 (423)
..+.
T Consensus 150 ~~S~ 153 (373)
T PRK06753 150 IHSK 153 (373)
T ss_pred cchH
Confidence 7654
No 138
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.98 E-value=3.1e-09 Score=103.11 Aligned_cols=134 Identities=19% Similarity=0.144 Sum_probs=84.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc------cccc--------ccCCceee-cCCC---ccccC-C
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS------LWQK--------RTYDRLNL-HLPK---QFCQL-P 80 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg------~~~~--------~~~~~~~~-~~~~---~~~~~-~ 80 (423)
+..||+|||||++|+++|..|++.|++|+|+|+.+..+. .+.. +..+.+.. .... .+... .
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 356899999999999999999999999999999865431 1110 00111000 0000 00000 0
Q ss_pred C-----CCCCC----CC--CC-CCCHHHHHHHHHHHHHHcC-CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEE
Q 014522 81 K-----LQFPE----DF--PE-YPTKRQFIQYLESYAEKFE-INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEY 147 (423)
Q Consensus 81 ~-----~~~~~----~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (423)
. .+... .. +. ...+..+.+.+.+.+.+.+ ++++++++|+++...+ +.+.+++.+ + .++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~------g-~~~ 153 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQ------G-NRW 153 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcC------C-CEE
Confidence 0 00000 00 11 2367777777777776664 7889999999998655 556566654 4 579
Q ss_pred EeCEEEEccCCCCCC
Q 014522 148 ICRWLVVATGENAER 162 (423)
Q Consensus 148 ~~d~vviAtG~~~~~ 162 (423)
.+|.||.|+|.++..
T Consensus 154 ~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 154 TGDALIGCDGVKSVV 168 (396)
T ss_pred ecCEEEECCCcChHH
Confidence 999999999976654
No 139
>PRK07045 putative monooxygenase; Reviewed
Probab=98.97 E-value=1.2e-08 Score=98.73 Aligned_cols=135 Identities=19% Similarity=0.150 Sum_probs=83.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----Cc--cccc--------ccCCc-----------eeecCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI----AS--LWQK--------RTYDR-----------LNLHLPK 74 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~----gg--~~~~--------~~~~~-----------~~~~~~~ 74 (423)
..+||+||||||+|+++|..|++.|++|+|+|+.+.. ++ .+.. +..+. +......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 3569999999999999999999999999999987643 11 1111 00000 0000000
Q ss_pred c-cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCE
Q 014522 75 Q-FCQLPKLQFP-EDFPEYPTKRQFIQYLESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRW 151 (423)
Q Consensus 75 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 151 (423)
. .......... ..+.....+..+.+.+.+.+.. .+++++++++|+++....+...+.|+..+ + +++.+|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------g-~~~~~~~ 156 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD------G-ERVAPTV 156 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC------C-CEEECCE
Confidence 0 0000000000 0100113566777777766654 57889999999999886543334566654 4 5899999
Q ss_pred EEEccCCCCC
Q 014522 152 LVVATGENAE 161 (423)
Q Consensus 152 vviAtG~~~~ 161 (423)
||.|+|..+.
T Consensus 157 vIgADG~~S~ 166 (388)
T PRK07045 157 LVGADGARSM 166 (388)
T ss_pred EEECCCCChH
Confidence 9999997663
No 140
>PRK06126 hypothetical protein; Provisional
Probab=98.96 E-value=1.9e-08 Score=101.67 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=84.5
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc--------------ccCCcee--------------e
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK--------------RTYDRLN--------------L 70 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------------~~~~~~~--------------~ 70 (423)
.+.+||+|||||++|+++|..|+++|++|+|+|+.+.....-+. +..+.+. .
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 34689999999999999999999999999999987532210000 0000000 0
Q ss_pred c--CCCccccCCCCCC------C--------C-CCCCCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEE
Q 014522 71 H--LPKQFCQLPKLQF------P--------E-DFPEYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRV 132 (423)
Q Consensus 71 ~--~~~~~~~~~~~~~------~--------~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v 132 (423)
. .......+..... + . .......+..+...+.+.+.+. +++++++++|++++.+. +...+
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v 162 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTA 162 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEE
Confidence 0 0000000000000 0 0 0011235566777777777664 78999999999998766 44445
Q ss_pred EEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 133 KTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 133 ~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
++.+..+ +...++++|+||.|+|.++.
T Consensus 163 ~~~~~~~--g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 163 TVEDLDG--GESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EEEECCC--CcEEEEEEEEEEecCCcchH
Confidence 5543221 13358999999999997664
No 141
>PRK07588 hypothetical protein; Provisional
Probab=98.96 E-value=6.1e-09 Score=100.88 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC--c----ccccc--------c----------CCceeecCCC--c
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA--S----LWQKR--------T----------YDRLNLHLPK--Q 75 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g--g----~~~~~--------~----------~~~~~~~~~~--~ 75 (423)
.||+|||||++|+++|..|+++|++|+|+|+.+... | .|... . ...+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 379999999999999999999999999999876431 1 12110 0 0111110000 0
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEE
Q 014522 76 FCQLPKLQFPEDFP---EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWL 152 (423)
Q Consensus 76 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~v 152 (423)
...+....+..... ....+..+...+.+... .+++++++++|++++..+ +.+.|++.+ + .++++|.|
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~------g-~~~~~d~v 150 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVRVTFER------G-TPRDFDLV 150 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEEEEECC------C-CEEEeCEE
Confidence 00111000111110 12356666666655433 368899999999998766 667777765 4 56899999
Q ss_pred EEccCCCCCCc
Q 014522 153 VVATGENAERV 163 (423)
Q Consensus 153 viAtG~~~~~~ 163 (423)
|.|.|.+|.-+
T Consensus 151 IgADG~~S~vR 161 (391)
T PRK07588 151 IGADGLHSHVR 161 (391)
T ss_pred EECCCCCccch
Confidence 99999766543
No 142
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.95 E-value=2.8e-09 Score=101.74 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEE-EEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWR-VKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
....+.+.+.+.+.+.|++++.+++|+++..++ +.|. |.+.+ + .+++|.||+|+|.++..
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~------g--~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSD------G--EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETT------E--EEEECEEEE--GGGHHH
T ss_pred cccchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccc------c--ccccceeEeccccccee
Confidence 578889999999999999999999999999988 7777 88876 5 49999999999976543
No 143
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.95 E-value=9.3e-09 Score=99.44 Aligned_cols=127 Identities=24% Similarity=0.345 Sum_probs=83.4
Q ss_pred EEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCcee-----------ecCCC--c-----cccC-------
Q 014522 25 VIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLN-----------LHLPK--Q-----FCQL------- 79 (423)
Q Consensus 25 vIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~-----------~~~~~--~-----~~~~------- 79 (423)
+|||||++|++||..|++.|.+|+|+|+.+.+|+.+.......+. ...+. . +..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999998777543211100000 00000 0 0000
Q ss_pred ----CCCCCC--CC---CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeC
Q 014522 80 ----PKLQFP--ED---FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICR 150 (423)
Q Consensus 80 ----~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 150 (423)
...++. .. ++.......+.+.+.+.+++.+++++.++.|+++.... +.|.+.+.. ..+.+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~~--------~~i~ad 150 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETSG--------GEYEAD 150 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEECC--------cEEEcC
Confidence 000000 00 11112467888888888899999999999999997654 567676632 478999
Q ss_pred EEEEccCCCCC
Q 014522 151 WLVVATGENAE 161 (423)
Q Consensus 151 ~vviAtG~~~~ 161 (423)
.||+|+|..+.
T Consensus 151 ~VIlAtG~~s~ 161 (400)
T TIGR00275 151 KVILATGGLSY 161 (400)
T ss_pred EEEECCCCccc
Confidence 99999997553
No 144
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.95 E-value=6e-09 Score=100.63 Aligned_cols=130 Identities=20% Similarity=0.190 Sum_probs=82.5
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCc----------cccc--------ccCCceee-cCCCccccCC--
Q 014522 23 GPVIVGAGPSGLATAACLRDQG-VPFVMLERAECIAS----------LWQK--------RTYDRLNL-HLPKQFCQLP-- 80 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~~~gg----------~~~~--------~~~~~~~~-~~~~~~~~~~-- 80 (423)
||+||||||+|+++|..|+++| ++|+|+|+.+.+.- .+.. +.++.+.. ..+.....+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999753311 0100 00111100 0000000000
Q ss_pred ----CCCC--CC---CCCCC-CCHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEe
Q 014522 81 ----KLQF--PE---DFPEY-PTKRQFIQYLESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYIC 149 (423)
Q Consensus 81 ----~~~~--~~---~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (423)
...+ .+ ....+ ..+..+.+.+.+.+.+ .+++++.+++|+++...+ +.+.+++.+ + .++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~------g-~~~~a 151 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDN------G-QQLRA 151 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECC------C-CEEEe
Confidence 0000 00 00111 3567788888887777 489999999999998765 566677654 4 57999
Q ss_pred CEEEEccCCCCC
Q 014522 150 RWLVVATGENAE 161 (423)
Q Consensus 150 d~vviAtG~~~~ 161 (423)
|.||.|+|.++.
T Consensus 152 d~vV~AdG~~S~ 163 (382)
T TIGR01984 152 KLLIAADGANSK 163 (382)
T ss_pred eEEEEecCCChH
Confidence 999999997653
No 145
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.95 E-value=1.3e-08 Score=98.59 Aligned_cols=135 Identities=18% Similarity=0.148 Sum_probs=79.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC--C-----cc-ccc--------ccCCc----------eeecCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI--A-----SL-WQK--------RTYDR----------LNLHLP 73 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~--g-----g~-~~~--------~~~~~----------~~~~~~ 73 (423)
|.+||+||||||+|+++|..|++.|++|+|+|+.+.. . +. +.. +..+. +.+...
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 80 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD 80 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC
Confidence 3679999999999999999999999999999998631 1 10 000 00011 111000
Q ss_pred CccccCCCCCCCCCC--CC--CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEe
Q 014522 74 KQFCQLPKLQFPEDF--PE--YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYIC 149 (423)
Q Consensus 74 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (423)
..... ..++... .. ......+.+.+.+.+...+++++++++++++...+. ....|+... + ++..++++
T Consensus 81 g~~~~---~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~~~V~~~~-~---G~~~~i~a 152 (392)
T PRK08243 81 GRRHR---IDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS-DRPYVTYEK-D---GEEHRLDC 152 (392)
T ss_pred CEEEE---eccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-CceEEEEEc-C---CeEEEEEe
Confidence 00001 1111110 00 112445555565556677899999999998875222 333355532 1 13357999
Q ss_pred CEEEEccCCCCCC
Q 014522 150 RWLVVATGENAER 162 (423)
Q Consensus 150 d~vviAtG~~~~~ 162 (423)
|+||.|.|..+.-
T Consensus 153 d~vVgADG~~S~v 165 (392)
T PRK08243 153 DFIAGCDGFHGVS 165 (392)
T ss_pred CEEEECCCCCCch
Confidence 9999999976643
No 146
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.94 E-value=9.7e-09 Score=99.64 Aligned_cols=133 Identities=19% Similarity=0.139 Sum_probs=80.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCC-----C------ccccc--------ccCCceeecC-----
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ---GVPFVMLERAECI-----A------SLWQK--------RTYDRLNLHL----- 72 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~---g~~v~lie~~~~~-----g------g~~~~--------~~~~~~~~~~----- 72 (423)
+++||+|||||++|+++|..|+++ |++|+|+|+.... + +.+.. +.++.+....
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 467999999999999999999998 9999999995211 1 01100 1111111000
Q ss_pred -----CCcc--ccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCc
Q 014522 73 -----PKQF--CQLPKLQFPEDF-PEYPTKRQFIQYLESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKT 143 (423)
Q Consensus 73 -----~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~ 143 (423)
.... ..+....+.... .....+..+...+.+.+.+ .+++++++++|+++...+ +.+.+++.+ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~------g 153 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDD------G 153 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECC------C
Confidence 0000 000000000000 0113455666666665555 468889999999987655 667777765 4
Q ss_pred eEEEEeCEEEEccCCCCC
Q 014522 144 EFEYICRWLVVATGENAE 161 (423)
Q Consensus 144 ~~~~~~d~vviAtG~~~~ 161 (423)
..+.+|+||.|+|.++.
T Consensus 154 -~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 154 -ETLTGRLLVAADGSHSA 170 (395)
T ss_pred -CEEEeCEEEEecCCChh
Confidence 57999999999997653
No 147
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.92 E-value=1.4e-08 Score=98.78 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=80.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCC--Cc--------cccc--------ccCCceeec--CCCc---c
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERA-ECI--AS--------LWQK--------RTYDRLNLH--LPKQ---F 76 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~-~~~--gg--------~~~~--------~~~~~~~~~--~~~~---~ 76 (423)
.+||+|||||++|+++|..|++.|++|+|+|+. +.. +. .+.. +.++.+.-. .+.. +
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999985 211 10 0000 111111100 0000 0
Q ss_pred ccCC---CCCCCCC------CCCCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEE
Q 014522 77 CQLP---KLQFPED------FPEYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFE 146 (423)
Q Consensus 77 ~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (423)
.... ...++.. +.....+..+...+.+.+.+. +++++++++|+++...+ ..+.|++.+ + ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~------g-~~ 154 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDN------G-QA 154 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECC------C-CE
Confidence 0000 0000000 011123555666666666554 68889999999998765 555577755 4 58
Q ss_pred EEeCEEEEccCCCCC
Q 014522 147 YICRWLVVATGENAE 161 (423)
Q Consensus 147 ~~~d~vviAtG~~~~ 161 (423)
+++|.||.|+|..+.
T Consensus 155 ~~a~lvIgADG~~S~ 169 (405)
T PRK08850 155 LTAKLVVGADGANSW 169 (405)
T ss_pred EEeCEEEEeCCCCCh
Confidence 999999999997554
No 148
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.92 E-value=1.2e-08 Score=100.05 Aligned_cols=134 Identities=18% Similarity=0.251 Sum_probs=81.8
Q ss_pred CCeEEECCChHHHHHHHHHHH----cCCCEEEEecCCCCC----------ccccc----------------ccCCceeec
Q 014522 22 NGPVIVGAGPSGLATAACLRD----QGVPFVMLERAECIA----------SLWQK----------------RTYDRLNLH 71 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~----~g~~v~lie~~~~~g----------g~~~~----------------~~~~~~~~~ 71 (423)
+||+|||||++|+++|..|++ .|++|+|||+.+.+. +.+.. +.++.+.-.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999999 799999999943211 10000 111111100
Q ss_pred --CCCc---cccC---CCCCCCC-----CCCCCCCHHHHHHHHHHHHHHcC---CceeccceEEEEEEe-----CCCCeE
Q 014522 72 --LPKQ---FCQL---PKLQFPE-----DFPEYPTKRQFIQYLESYAEKFE---INPRFNECVQSARYD-----ETSGLW 130 (423)
Q Consensus 72 --~~~~---~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~-----~~~~~~ 130 (423)
.+.. +..- ....+.. ......++..+...+.+.+.+.+ ++++++++|++++.. ......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 0000 0000 0011111 00112366778888877777765 888999999999753 112445
Q ss_pred EEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 131 RVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 131 ~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
.|++.+ + +++++|+||.|.|..|.-
T Consensus 161 ~v~~~~------g-~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 161 HITLSD------G-QVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEEcC------C-CEEEeeEEEEecCCCChh
Confidence 566654 4 689999999999976643
No 149
>PRK05868 hypothetical protein; Validated
Probab=98.91 E-value=2.6e-08 Score=95.56 Aligned_cols=132 Identities=15% Similarity=0.143 Sum_probs=78.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc------cccc--------ccCC----------ceeecCCCc-
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS------LWQK--------RTYD----------RLNLHLPKQ- 75 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg------~~~~--------~~~~----------~~~~~~~~~- 75 (423)
|+||+|||||++|+++|..|++.|++|+|||+.+.... .+.. +.++ ......+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 46899999999999999999999999999999864421 0000 0000 000000000
Q ss_pred cccCCCCCCCC--CC--CC-CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeC
Q 014522 76 FCQLPKLQFPE--DF--PE-YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICR 150 (423)
Q Consensus 76 ~~~~~~~~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 150 (423)
.........+. .. +. ...+..+.+.+.+. ...+++++++++|++++.+. +...+++.+ + .++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~--~~v~v~~~d------g-~~~~ad 150 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDG--DSVRVTFER------A-AAREFD 150 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecC--CeEEEEECC------C-CeEEeC
Confidence 00000000000 00 00 11345555544332 23478899999999997654 565577665 4 579999
Q ss_pred EEEEccCCCCCC
Q 014522 151 WLVVATGENAER 162 (423)
Q Consensus 151 ~vviAtG~~~~~ 162 (423)
.||.|.|..|.-
T Consensus 151 lvIgADG~~S~v 162 (372)
T PRK05868 151 LVIGADGLHSNV 162 (372)
T ss_pred EEEECCCCCchH
Confidence 999999976643
No 150
>PRK07236 hypothetical protein; Provisional
Probab=98.91 E-value=3e-08 Score=95.86 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=76.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----C-cc--ccc--------ccCCceeecCCC---ccccCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI----A-SL--WQK--------RTYDRLNLHLPK---QFCQLPK 81 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~----g-g~--~~~--------~~~~~~~~~~~~---~~~~~~~ 81 (423)
+..+|+|||||++|+++|..|++.|++|+|+|+.+.. | |. +.. +..+......+. .+.....
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 4679999999999999999999999999999997532 1 10 100 000000000000 0000000
Q ss_pred CCCC-CCCC-CCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 82 LQFP-EDFP-EYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 82 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
.... ...+ .......+.+.+.+ .+ ...++++++|+++...+ +.+++++.+ + .++++|.||.|.|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~------g-~~~~ad~vIgADG~ 152 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRA---AFPAERYHLGETLVGFEQDG--DRVTARFAD------G-RRETADLLVGADGG 152 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHH---hCCCcEEEcCCEEEEEEecC--CeEEEEECC------C-CEEEeCEEEECCCC
Confidence 0000 0000 11233444444433 22 34589999999998765 566677765 4 58999999999997
Q ss_pred CCCC
Q 014522 159 NAER 162 (423)
Q Consensus 159 ~~~~ 162 (423)
.+..
T Consensus 153 ~S~v 156 (386)
T PRK07236 153 RSTV 156 (386)
T ss_pred CchH
Confidence 6654
No 151
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.90 E-value=1.7e-08 Score=97.50 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=79.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----C---c-----cccc--------ccCCceeec--CCC-ccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI----A---S-----LWQK--------RTYDRLNLH--LPK-QFC 77 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~----g---g-----~~~~--------~~~~~~~~~--~~~-~~~ 77 (423)
.+||+|||||++|+++|..|++.|++|+|||+.+.. . + .+.. +.++.+.-. .+. ...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 469999999999999999999999999999986411 1 1 1110 111111100 000 000
Q ss_pred --cC--CCCCCCC-C--CC---CCCCHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEE
Q 014522 78 --QL--PKLQFPE-D--FP---EYPTKRQFIQYLESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFE 146 (423)
Q Consensus 78 --~~--~~~~~~~-~--~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (423)
.. ....++. . .. ....+..+...+.+.+.. .+++++.+++|++++.++ +.+.+++.+ + .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~------g-~~ 153 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLES------G-AE 153 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECC------C-CE
Confidence 00 0000000 0 01 112334455555444444 368889999999998866 556677765 5 68
Q ss_pred EEeCEEEEccCCCCCC
Q 014522 147 YICRWLVVATGENAER 162 (423)
Q Consensus 147 ~~~d~vviAtG~~~~~ 162 (423)
+++|.||.|+|..|.-
T Consensus 154 ~~~~lvIgADG~~S~v 169 (384)
T PRK08849 154 IEAKWVIGADGANSQV 169 (384)
T ss_pred EEeeEEEEecCCCchh
Confidence 9999999999976643
No 152
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.90 E-value=2e-08 Score=97.30 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
....+.+.+.+.+.+.+++++.+++|.++...+ +.+.|.+.+ + ++.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~------g--~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGVVVRTTQ------G--EYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeEEEEECC------C--EEEeCEEEECCCcch
Confidence 456777777788888899999999999988765 566676654 4 699999999999865
No 153
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=1.3e-08 Score=91.20 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=95.3
Q ss_pred cccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc-----------------------------ccccc----
Q 014522 17 RCIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS-----------------------------LWQKR---- 63 (423)
Q Consensus 17 ~~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg-----------------------------~~~~~---- 63 (423)
+.++..+++|||||..|+++|++|+++|.++.++|+-+.+-. .|+..
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~ 82 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEES 82 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhh
Confidence 345788999999999999999999999999999998743311 11110
Q ss_pred -----cCCcee-ecCC------------------------Cc-cccCC-CCCCCCCCC-------CCCCHHHHHHHHHHH
Q 014522 64 -----TYDRLN-LHLP------------------------KQ-FCQLP-KLQFPEDFP-------EYPTKRQFIQYLESY 104 (423)
Q Consensus 64 -----~~~~~~-~~~~------------------------~~-~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~ 104 (423)
....+. ...+ .. -..++ ..++++.|. ++.........++..
T Consensus 83 g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~ 162 (399)
T KOG2820|consen 83 GVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK 162 (399)
T ss_pred ceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence 000000 0000 00 01122 334455443 345678888899999
Q ss_pred HHHcCCceeccceEEEEEEeCCCC-eEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCC
Q 014522 105 AEKFEINPRFNECVQSARYDETSG-LWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPD 166 (423)
Q Consensus 105 ~~~~~~~~~~~~~v~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~ 166 (423)
++++|+.++.+..|..+...++.+ ...|.|.+ + ..+.++.+|+|+|+|.....|.
T Consensus 163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~------g-s~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD------G-SIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHcCeEEecCcceeeEeeccCCCceeEEEecc------C-CeeecceEEEEecHHHHhhcCc
Confidence 999999999999999887654333 33355554 4 5799999999999988766664
No 154
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.89 E-value=2.4e-08 Score=96.19 Aligned_cols=63 Identities=25% Similarity=0.223 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
....+...+.+.+.+.+++++.+++|+++.... +.+.|.+.+ + .+.+|.||+|+|.++....+
T Consensus 147 ~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~------g--~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVTVTTAD------G--TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEEEEeCC------C--EEEeeEEEEecCcchhhhcc
Confidence 445666666667778899999999999998765 566677654 4 68999999999987654433
No 155
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.88 E-value=2.7e-08 Score=96.17 Aligned_cols=137 Identities=17% Similarity=0.138 Sum_probs=77.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC------C-c-cccc--------ccCCce----------eecCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI------A-S-LWQK--------RTYDRL----------NLHLP 73 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~------g-g-~~~~--------~~~~~~----------~~~~~ 73 (423)
|.+||+|||||++|+++|..|++.|++|+|+|+.+.. + + .+.. +.++.+ .....
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 4579999999999999999999999999999998631 1 1 1111 001110 00000
Q ss_pred CccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEc-ccCCCCCceEEEEeCE
Q 014522 74 KQFCQLPKLQFPEDFPE-YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTA-SSAGSTKTEFEYICRW 151 (423)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~-~~~~~~~~~~~~~~d~ 151 (423)
.....++........+. ......+...+.+.+.+.++.++++.+++.+...+. ....|++. + ++..++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~V~~~~~-----g~~~~i~adl 154 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DRPYVTFERD-----GERHRLDCDF 154 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-CccEEEEEEC-----CeEEEEEeCE
Confidence 00000000000000000 012345555566666667888888888776644221 22336654 3 1224799999
Q ss_pred EEEccCCCCCC
Q 014522 152 LVVATGENAER 162 (423)
Q Consensus 152 vviAtG~~~~~ 162 (423)
||.|.|..|.-
T Consensus 155 vIGADG~~S~V 165 (390)
T TIGR02360 155 IAGCDGFHGVS 165 (390)
T ss_pred EEECCCCchhh
Confidence 99999977643
No 156
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.88 E-value=2.5e-08 Score=96.88 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=83.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----c--cccc--------ccCCceee-c-CCCccc-------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA----S--LWQK--------RTYDRLNL-H-LPKQFC------- 77 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g----g--~~~~--------~~~~~~~~-~-~~~~~~------- 77 (423)
..+|+|||||++|+++|..|++.|++|+|+|+.+... + .+.. +.++.+.- . .+..+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCc
Confidence 3689999999999999999999999999999876431 1 1111 01111100 0 000000
Q ss_pred ----cCCCCCCCC--CCCCC--CCHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEE
Q 014522 78 ----QLPKLQFPE--DFPEY--PTKRQFIQYLESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYI 148 (423)
Q Consensus 78 ----~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (423)
......... ....+ ..+..+.+.+.+.+.+ .+++++++++|+++.... +.+.+++.+.. +..++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~~----~~~~~~ 155 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRTN----SVETVS 155 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeCC----CCcEEe
Confidence 000000000 00111 3677888888776655 478899999999998765 55556654321 225799
Q ss_pred eCEEEEccCCCCCC
Q 014522 149 CRWLVVATGENAER 162 (423)
Q Consensus 149 ~d~vviAtG~~~~~ 162 (423)
+|.||.|.|..|..
T Consensus 156 adlvIgADG~~S~v 169 (400)
T PRK06475 156 AAYLIACDGVWSML 169 (400)
T ss_pred cCEEEECCCccHhH
Confidence 99999999976643
No 157
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.88 E-value=2.7e-08 Score=96.00 Aligned_cols=60 Identities=25% Similarity=0.197 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
....+...+.+.+.+.+++++.+++|+++..++ +.+.|.+.+ + ++.+|.||+|+|.++..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~------~--~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTK------G--SYQANKLVVTAGAWTSK 202 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCC------C--EEEeCEEEEecCcchHH
Confidence 556777777788888899999999999998765 566666654 3 79999999999976543
No 158
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.87 E-value=6e-08 Score=95.43 Aligned_cols=135 Identities=22% Similarity=0.228 Sum_probs=83.2
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCcccc--------cccC--------Ccee-------------ec-
Q 014522 23 GPVIVGAGPSGLATAACLRDQG-VPFVMLERAECIASLWQ--------KRTY--------DRLN-------------LH- 71 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~~~gg~~~--------~~~~--------~~~~-------------~~- 71 (423)
||||||+|.+|++||..++++| .+|+|+||.+..||.-. .... +... .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 99999999877665211 1000 0000 00
Q ss_pred ---------CCC--ccccCCCCCC-------------CCC-C--CCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEe
Q 014522 72 ---------LPK--QFCQLPKLQF-------------PED-F--PEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYD 124 (423)
Q Consensus 72 ---------~~~--~~~~~~~~~~-------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 124 (423)
.+. .+.. ....+ +.. . ........+...+.+.+.+.+++++.++.|+.+..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 000 0000 00100 000 0 011345678888888899999999999999999875
Q ss_pred CCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 125 ETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
++.....+...+..+ ....+.++.||+|+|.++.
T Consensus 160 ~~g~v~Gv~~~~~~g---~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 160 DQGTVVGVVVKGKGK---GIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCcEEEEEEEeCCC---eEEEEecceEEEecCCCCC
Confidence 432333344433211 2235789999999997554
No 159
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.87 E-value=1.3e-09 Score=106.33 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=35.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeec---------CC----CccccCCCCCC--CCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLH---------LP----KQFCQLPKLQF--PED 87 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~---------~~----~~~~~~~~~~~--~~~ 87 (423)
||||||||++|++||+.+++.|.+|+|||+.+.+||...........-. .. ........... ...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999999986654321110000 00 00000000000 000
Q ss_pred CC--CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 88 FP--EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 88 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
+. .......+...+.+++.+.++++++++.|.++..++. ....|++.+.. |..+++|+.+|.|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~~~~----g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVETKS----GRKEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-ccccccccccc----cccccccccccccccc
Confidence 10 1234455556677777788999999999999987652 23335554422 4478999999999994
No 160
>PRK06996 hypothetical protein; Provisional
Probab=98.86 E-value=3.7e-08 Score=95.59 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=84.4
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcC----CCEEEEecCCCCC---------------------cccccccCC--ceeec
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQG----VPFVMLERAECIA---------------------SLWQKRTYD--RLNLH 71 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g----~~v~lie~~~~~g---------------------g~~~~~~~~--~~~~~ 71 (423)
++.+||+||||||+|+++|..|++.| ++|+|+|+.+... |.|.....+ .+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~ 88 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVS 88 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEe
Confidence 46789999999999999999999987 4799999964221 011110000 00000
Q ss_pred CCCc----cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEE
Q 014522 72 LPKQ----FCQLPKLQFPEDFPE-YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFE 146 (423)
Q Consensus 72 ~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (423)
.... ......... .... ...+..+.+.+.+.+.+.++.++.++++++++... ..++++..+.+ +.++
T Consensus 89 ~~~~~g~~~~~~~~~~~--~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~~----g~~~ 160 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDV--PALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTPQ----GART 160 (398)
T ss_pred cCCCCceEEecccccCC--CcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCCC----cceE
Confidence 0000 000001111 1111 24678888888888888899999999999987665 66667665421 2268
Q ss_pred EEeCEEEEccCC
Q 014522 147 YICRWLVVATGE 158 (423)
Q Consensus 147 ~~~d~vviAtG~ 158 (423)
+++|+||.|+|.
T Consensus 161 i~a~lvIgADG~ 172 (398)
T PRK06996 161 LRARIAVQAEGG 172 (398)
T ss_pred EeeeEEEECCCC
Confidence 999999999995
No 161
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.86 E-value=1.9e-08 Score=99.83 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=77.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-CCCcccccccCCcee----e---cCCCc----cccCCCCCC---
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE-CIASLWQKRTYDRLN----L---HLPKQ----FCQLPKLQF--- 84 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~-~~gg~~~~~~~~~~~----~---~~~~~----~~~~~~~~~--- 84 (423)
..+||+|||||+||++||..+++.|.+|+++|+.. .+|+..+.....+.. . +.-.. ........+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 46899999999999999999999999999999873 454322110000000 0 00000 000000000
Q ss_pred -----CCCCC--CCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEcc
Q 014522 85 -----PEDFP--EYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVAT 156 (423)
Q Consensus 85 -----~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAt 156 (423)
|..+. ....+..+...+...+.+. ++.+ +++.|.++..++. ....|.+.+ + ..+.|+.||+||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~g-rV~GV~t~d------G-~~I~Ak~VIlAT 153 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENG-RVVGVVTQD------G-LEFRAKAVVLTT 153 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCC-EEEEEEECC------C-CEEECCEEEEee
Confidence 10000 0124556666676666655 6665 5677888766542 222355554 4 689999999999
Q ss_pred CCCC
Q 014522 157 GENA 160 (423)
Q Consensus 157 G~~~ 160 (423)
|++.
T Consensus 154 GTFL 157 (618)
T PRK05192 154 GTFL 157 (618)
T ss_pred Ccch
Confidence 9644
No 162
>PRK07538 hypothetical protein; Provisional
Probab=98.85 E-value=1.5e-07 Score=91.75 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=80.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----cc--ccc--------ccCCceee-cCC---CccccCCC--
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA----SL--WQK--------RTYDRLNL-HLP---KQFCQLPK-- 81 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g----g~--~~~--------~~~~~~~~-~~~---~~~~~~~~-- 81 (423)
.||+|||||++|+++|..|+++|++|+|+|+.+.+. |. +.. +.++.+.. ..+ ..++....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 389999999999999999999999999999986432 11 000 00100000 000 00000000
Q ss_pred ---CCCC----CCCCCC-CCHHHHHHHHHHHHHH-cCC-ceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCE
Q 014522 82 ---LQFP----EDFPEY-PTKRQFIQYLESYAEK-FEI-NPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRW 151 (423)
Q Consensus 82 ---~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 151 (423)
.+.. ..++.+ .++..+...+.+.+.+ .+. .++++++|+++.... ....+.+.+..+ ++..++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~--~~~~~~~~~~~~--g~~~~~~adl 156 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA--DVTVVFLGDRAG--GDLVSVRGDV 156 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC--CceEEEEeccCC--CccceEEeeE
Confidence 0000 011111 4678888877766644 464 589999999998765 333344433111 1236899999
Q ss_pred EEEccCCCCC
Q 014522 152 LVVATGENAE 161 (423)
Q Consensus 152 vviAtG~~~~ 161 (423)
||.|.|..+.
T Consensus 157 vIgADG~~S~ 166 (413)
T PRK07538 157 LIGADGIHSA 166 (413)
T ss_pred EEECCCCCHH
Confidence 9999997664
No 163
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.85 E-value=6.7e-08 Score=96.43 Aligned_cols=66 Identities=26% Similarity=0.242 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
....+...+...+.+.|+.++.+++|+++.... +.|.|.+.+..+ ...+++++.||.|+|+|+...
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~g---~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 153 DDARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDADG---ETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCCC---CEEEEEecEEEECCCccHHHH
Confidence 345555556667788899999999999988765 667777665222 335799999999999877543
No 164
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.81 E-value=6.7e-08 Score=94.22 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
....+...+.+.+.+.|++++.+++|+++...+ +.+.+.+.+..+ .....+++|+||+|+|.++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~--~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAE--HPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCC--CccceEecCEEEECCCcChH
Confidence 344566667778888899999999999998755 566665543110 00136899999999998764
No 165
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.80 E-value=1.1e-07 Score=94.92 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 95 RQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
..+...+...+.+.|+.++.+++|+++..++ +.|.+++.+..+ +...+++++.||+|+|+|+...
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~--g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTAT--GKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCC--CCEEEEEcCEEEECCCccHHHH
Confidence 4444455566788899999999999998765 667777654221 1235799999999999877543
No 166
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.79 E-value=5.1e-08 Score=95.19 Aligned_cols=128 Identities=17% Similarity=0.197 Sum_probs=77.5
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCc------cccc--------ccCCceee-c--CCC--c--cccCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQG-VPFVMLERAECIAS------LWQK--------RTYDRLNL-H--LPK--Q--FCQLP 80 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~~~gg------~~~~--------~~~~~~~~-~--~~~--~--~~~~~ 80 (423)
+|+|||||++|+++|..|+++| ++|+|+|+.+..+. .+.. +..+.+.. . .+. . .+...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 69999999865432 1111 00000000 0 000 0 00000
Q ss_pred C--------CCCCCCCCC-CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCE
Q 014522 81 K--------LQFPEDFPE-YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRW 151 (423)
Q Consensus 81 ~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 151 (423)
. ......... ...+..+.+.+.+.+. ...++++++|++++..+ ..|.+++.+ + .++.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~------g-~~~~ad~ 150 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTD------G-TEYRCDL 150 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcC------C-CEEEeeE
Confidence 0 000000011 1356666666655432 34568899999998765 567787765 4 5799999
Q ss_pred EEEccCCCCC
Q 014522 152 LVVATGENAE 161 (423)
Q Consensus 152 vviAtG~~~~ 161 (423)
||+|+|.++.
T Consensus 151 vVgADG~~S~ 160 (414)
T TIGR03219 151 LIGADGIKSA 160 (414)
T ss_pred EEECCCccHH
Confidence 9999997664
No 167
>PLN02985 squalene monooxygenase
Probab=98.79 E-value=1.2e-07 Score=94.38 Aligned_cols=137 Identities=23% Similarity=0.221 Sum_probs=77.5
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----ccccc----------ccCCce-----------eecCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA----SLWQK----------RTYDRL-----------NLHLP 73 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g----g~~~~----------~~~~~~-----------~~~~~ 73 (423)
+..+||+|||||++|+++|..|++.|.+|+|+|+..... |.+-. +..+.+ .....
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~ 120 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD 120 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC
Confidence 568899999999999999999999999999999874221 11100 011111 00000
Q ss_pred Ccc--ccCCCCC--CCCCCC-CCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCe-EEEEEcccCCCCCceEE
Q 014522 74 KQF--CQLPKLQ--FPEDFP-EYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGL-WRVKTASSAGSTKTEFE 146 (423)
Q Consensus 74 ~~~--~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~-~~v~~~~~~~~~~~~~~ 146 (423)
... ..++... .+.... ...++..+.+.+.+.+.+. ++++.. ++|+++..++ +. ..|+....++ +..+
T Consensus 121 g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~--~~v~gV~~~~~dG---~~~~ 194 (514)
T PLN02985 121 GKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEK--GVIKGVTYKNSAG---EETT 194 (514)
T ss_pred CEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcC--CEEEEEEEEcCCC---CEEE
Confidence 000 0011000 000000 1235677888888877765 566554 4576665443 32 1244432221 3346
Q ss_pred EEeCEEEEccCCCCC
Q 014522 147 YICRWLVVATGENAE 161 (423)
Q Consensus 147 ~~~d~vviAtG~~~~ 161 (423)
+.+|.||.|+|.+|.
T Consensus 195 ~~AdLVVgADG~~S~ 209 (514)
T PLN02985 195 ALAPLTVVCDGCYSN 209 (514)
T ss_pred EECCEEEECCCCchH
Confidence 789999999997664
No 168
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.79 E-value=1.6e-07 Score=93.65 Aligned_cols=136 Identities=19% Similarity=0.176 Sum_probs=82.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccc--ccccC----Cce----eec-CCCccc-----------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLW--QKRTY----DRL----NLH-LPKQFC----------- 77 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~--~~~~~----~~~----~~~-~~~~~~----------- 77 (423)
..+||||||+|.+|++||+.+++.|.+|+|+||.+..||.- ..... ... ... .+..++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999988776521 11000 000 000 000000
Q ss_pred -------------------cCCCCCC-----------CC-CCC--CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEe
Q 014522 78 -------------------QLPKLQF-----------PE-DFP--EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYD 124 (423)
Q Consensus 78 -------------------~~~~~~~-----------~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 124 (423)
.-...++ +. ..+ .......+.+.+.+.+++.++++++++.|+.+..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 0000000 00 000 11134567777788888889999999999999764
Q ss_pred CCCCe-EEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 125 ETSGL-WRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 125 ~~~~~-~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
+ +. .-|.....++ ....+.++.||+|+|.+.
T Consensus 220 ~--g~V~Gv~~~~~~g---~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 220 D--GKVTGVKVKINGK---ETKTISSKAVVVTTGGFG 251 (506)
T ss_pred C--CEEEEEEEEeCCC---eEEEEecCeEEEeCCCcc
Confidence 3 43 1233322111 235799999999999654
No 169
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.78 E-value=7.8e-08 Score=70.31 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=65.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQYLE 102 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (423)
+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. ......+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------------------------------~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------------------------------PGFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------TTSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------hhcCHHHHHHHH
Confidence 48999999999999999999999999999987542 124466777788
Q ss_pred HHHHHcCCceeccceEEEEEEeCCCCeEEEEEcc
Q 014522 103 SYAEKFEINPRFNECVQSARYDETSGLWRVKTAS 136 (423)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~ 136 (423)
+..++.++++++++.+.++..+.+ + ++|++.+
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~-~-~~V~~~~ 79 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGD-G-VEVTLED 79 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETT-S-EEEEEET
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCC-E-EEEEEec
Confidence 888888999999999999998874 2 4476654
No 170
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.78 E-value=1.1e-08 Score=71.91 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=42.1
Q ss_pred EECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCC
Q 014522 26 IVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPK 74 (423)
Q Consensus 26 IIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~ 74 (423)
|||||++|+++|..|++.|++|+|+|+.+.+||.+.....+....+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~ 49 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA 49 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence 8999999999999999999999999999999999888766666655443
No 171
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.77 E-value=1.3e-07 Score=100.62 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=33.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAEC 55 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~ 55 (423)
..+||+|||+|.||++||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 467999999999999999999999999999999764
No 172
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=90.28 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
....+...+.+.+.+.++.++++++|+++....+ +.+.+.+.+ +..+++|+.||.|.|.++.+
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g~~~~~~~~------g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-GVFVLNTSN------GEETLEAKFVINAAGLYADP 213 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-ceEEEEecC------CcEEEEeeEEEECCchhHHH
Confidence 4566667777778888999999999999998873 255566665 42339999999999976543
No 173
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.76 E-value=6.6e-08 Score=95.54 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+...+...+.+.+.+.|++++.++.|++++. . +.+.|.+.+ + ++.+|.||+|+|+++....
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~------g--~v~A~~VV~Atga~s~~l~ 241 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPD------G--QVTADKVVLALNAWMASHF 241 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCC------c--EEECCEEEEcccccccccC
Confidence 4566667777788889999999999999874 2 446676654 4 6999999999998765433
No 174
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.75 E-value=1.4e-07 Score=91.99 Aligned_cols=61 Identities=11% Similarity=-0.062 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
....+...+.+.+.+.|++++.+++|+++...+....+.|.+.+ + .+.+++||+|+|.++.
T Consensus 181 ~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~------g--~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 181 RHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR------G--FIGAKKVGVAVAGHSS 241 (407)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC------c--eEECCEEEECCChhhH
Confidence 34455555667778889999999999999764322334466654 4 6999999999997653
No 175
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.74 E-value=8.8e-08 Score=91.59 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=72.7
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCc--ccccccCCce-----------eecCCCccccCCCCCCCC-
Q 014522 23 GPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIAS--LWQKRTYDRL-----------NLHLPKQFCQLPKLQFPE- 86 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~gg--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~- 86 (423)
||+|||||+||+++|..|++. |++|+++|+.+..++ +|.....+-. ...-+......+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887766 4433111000 000000000000000000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCC
Q 014522 87 DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGEN 159 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~ 159 (423)
.......+..+.+++.+.+ +..++++++|++++ . +. |++.+ + .+++++.||.|.|..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l---~~~i~~~~~V~~v~--~--~~--v~l~d------g-~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAF---PEGVILGRKAVGLD--A--DG--VDLAP------G-TRINARSVIDCRGFK 137 (370)
T ss_pred CCceEEEHHHHHHHHHHhh---cccEEecCEEEEEe--C--CE--EEECC------C-CEEEeeEEEECCCCC
Confidence 0011235677777765443 33367788898883 2 33 55543 4 689999999999954
No 176
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.74 E-value=1.3e-07 Score=95.19 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=82.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc-ccccc-------cCC--c----------------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS-LWQKR-------TYD--R---------------------- 67 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~-------~~~--~---------------------- 67 (423)
..+||+|||||..|+++|+.|+++|++|+|+|+.+...| .+.++ .|. .
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 468999999999999999999999999999999754332 22221 010 0
Q ss_pred -----eeecCCC-cc---------ccCCCCC------------CCCC----------CCCCCCHHHHHHHHHHHHHHcCC
Q 014522 68 -----LNLHLPK-QF---------CQLPKLQ------------FPED----------FPEYPTKRQFIQYLESYAEKFEI 110 (423)
Q Consensus 68 -----~~~~~~~-~~---------~~~~~~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 110 (423)
+.+..+. .. ......+ +|.- .........+...+...+.++|+
T Consensus 85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga 164 (546)
T PRK11101 85 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGA 164 (546)
T ss_pred cccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhCCC
Confidence 0000000 00 0000000 0000 00122445555666667788899
Q ss_pred ceeccceEEEEEEeCCCCe-EEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 111 NPRFNECVQSARYDETSGL-WRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 111 ~~~~~~~v~~v~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
+++.+++|+++..++ +. +.|.+.+..+ +....++++.||+|+|.|+.
T Consensus 165 ~i~~~t~V~~i~~~~--~~v~gv~v~d~~~--g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 165 QILTYHEVTGLIREG--DTVCGVRVRDHLT--GETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EEEeccEEEEEEEcC--CeEEEEEEEEcCC--CcEEEEECCEEEECCChhHH
Confidence 999999999998754 33 2344432111 12257999999999998764
No 177
>PLN02661 Putative thiazole synthesis
Probab=98.73 E-value=6.9e-08 Score=89.48 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=77.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCCc-ccccccC-CceeecCCC-ccccCCCCCCCCCCCCCC---C
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ-GVPFVMLERAECIAS-LWQKRTY-DRLNLHLPK-QFCQLPKLQFPEDFPEYP---T 93 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~-g~~v~lie~~~~~gg-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~ 93 (423)
.+||+|||||++|+++|+.|++. |++|+++|+...+|| .|..... ....+..+. .+..--..++... ..|. +
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~h 170 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIKH 170 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEecc
Confidence 67999999999999999999987 899999999887755 5543211 111111000 0011011122111 1111 3
Q ss_pred HHHHHHHHHHHH-HHcCCceeccceEEEEEEeCCCCeEEEEE------cccCC-CCCceEEEEeCEEEEccCC
Q 014522 94 KRQFIQYLESYA-EKFEINPRFNECVQSARYDETSGLWRVKT------ASSAG-STKTEFEYICRWLVVATGE 158 (423)
Q Consensus 94 ~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~v~~------~~~~~-~~~~~~~~~~d~vviAtG~ 158 (423)
...+.+.+.+.+ ++.+++++.++.|+++..++. ...-+.+ .+... ...+...++++.||+|||+
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 344445555444 446889999999998876542 2222221 11000 0001246899999999995
No 178
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.72 E-value=2.8e-07 Score=94.10 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=82.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCC--c----cccc--------ccCCc----------eeecCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ-GVPFVMLERAECIA--S----LWQK--------RTYDR----------LNLHLPK 74 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~-g~~v~lie~~~~~g--g----~~~~--------~~~~~----------~~~~~~~ 74 (423)
..+||+||||||+|+++|..|++. |++++|||+.+... | .+.. +..+. .....+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 367999999999999999999995 99999999875331 1 1100 00000 0000000
Q ss_pred -----ccc---cCCCCCCC-CCCCC-CCCHHHHHHHHHHHHHHcCC--ceeccceEEEEEEeCCC-CeEEEEEcccCCC-
Q 014522 75 -----QFC---QLPKLQFP-EDFPE-YPTKRQFIQYLESYAEKFEI--NPRFNECVQSARYDETS-GLWRVKTASSAGS- 140 (423)
Q Consensus 75 -----~~~---~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~~~~-~~~~v~~~~~~~~- 140 (423)
... .+...... ..++. ..+...+.+.+.+.+.+.+. .+.++++++++..+.+. ...++++.+.++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 000 00000000 00111 13556677888777777664 56889999999876421 2345666432100
Q ss_pred CCceEEEEeCEEEEccCCCCCC
Q 014522 141 TKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 141 ~~~~~~~~~d~vviAtG~~~~~ 162 (423)
.+..+++++|+||.|.|+.|.-
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CCceEEEEeCEEEECCCCchHH
Confidence 0123689999999999986643
No 179
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.72 E-value=2e-07 Score=91.11 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=78.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc--cc-------C-------Cc-------------------
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK--RT-------Y-------DR------------------- 67 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--~~-------~-------~~------------------- 67 (423)
||||||+|.+|++||+.++++|.+|+|+||.+..||.... .. . +.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999876652111 00 0 00
Q ss_pred --------------------eeecC----CCccccCCCCCCC----CCCC-----CCCCHHHHHHHHHHHHHHcCCceec
Q 014522 68 --------------------LNLHL----PKQFCQLPKLQFP----EDFP-----EYPTKRQFIQYLESYAEKFEINPRF 114 (423)
Q Consensus 68 --------------------~~~~~----~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (423)
+.... ............. .... .......+...+.+.+++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~ 160 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence 00000 0000000000000 0000 1125677888899999999999999
Q ss_pred cceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 115 NECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 115 ~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
++.++++..++. ...-+...+..+ ++...++++.||+|||.+..
T Consensus 161 ~~~~~~Li~e~g-~V~Gv~~~~~~~--g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 161 NTRVTDLITEDG-RVTGVVAENPAD--GEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp SEEEEEEEEETT-EEEEEEEEETTT--CEEEEEEESEEEE----BGG
T ss_pred cceeeeEEEeCC-ceeEEEEEECCC--CeEEEEeeeEEEeccCcccc
Confidence 999999988752 222233331111 14467899999999996543
No 180
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.71 E-value=4.2e-08 Score=92.32 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=72.4
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEE-ecCCCCCcccccccCCce---------------eecCCCc---cccCCCC-
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVML-ERAECIASLWQKRTYDRL---------------NLHLPKQ---FCQLPKL- 82 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~li-e~~~~~gg~~~~~~~~~~---------------~~~~~~~---~~~~~~~- 82 (423)
||+|||||.||+.||..+++.|.+|+|+ .+.+.++.+-+.....+. ....... .+.....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 344444433222110000 0000000 0000000
Q ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 83 QFPEDFP--EYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 83 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
.-|..+. ....+..+..++++.++.. ++.+ .+++|+++..++. ...-|.+.+ + ..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~-~v~GV~~~~------g-~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVENG-KVKGVVTKD------G-EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECTT-EEEEEEETT------S-EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecCC-eEEEEEeCC------C-CEEecCEEEEeccc
Confidence 0001111 1247888888888888874 5554 5788999988662 344466655 5 78999999999994
No 181
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.70 E-value=1.1e-07 Score=98.12 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 92 PTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
.....+...+.+.+.+ ++.++.+++|+++...+ +.|.|.+.+ + ..+.+|.||+|+|.++...
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~------g-~~~~ad~VV~A~G~~s~~l 466 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAG------G-TLASAPVVVLANGHDAARF 466 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECC------C-cEEECCEEEECCCCCcccc
Confidence 3455666767777777 89999999999998766 678777654 4 4678999999999876543
No 182
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.70 E-value=3.4e-07 Score=92.07 Aligned_cols=143 Identities=18% Similarity=0.099 Sum_probs=84.1
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--------ccccc-cCCcee-------------ec-----
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--------LWQKR-TYDRLN-------------LH----- 71 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--------~~~~~-~~~~~~-------------~~----- 71 (423)
+...||+|||+|.||++||..+++.|.+|+|+||....+| .+... ..+... .+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4578999999999999999999999999999999876543 11100 000000 00
Q ss_pred -----CCCc--cccCCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEe
Q 014522 72 -----LPKQ--FCQLPKLQFPED--------------FP------EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYD 124 (423)
Q Consensus 72 -----~~~~--~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 124 (423)
.+.. ...-...+|... .. ...+...+...+.+.+++.+++++.++.|+++..+
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~ 173 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEc
Confidence 0000 000001111100 00 01246678888888888889999999999998765
Q ss_pred CCCCeEEEEEcccC-CCCCceEEEEeCEEEEccCCCCC
Q 014522 125 ETSGLWRVKTASSA-GSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 125 ~~~~~~~v~~~~~~-~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
++....-+...+.. +..++...+.++.||+|||.++.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 42122223332100 00013357899999999997554
No 183
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.70 E-value=4.1e-07 Score=90.23 Aligned_cols=136 Identities=18% Similarity=0.257 Sum_probs=81.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC--CCcccc--cc------cCCcee-e-cCCCcc-----------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAEC--IASLWQ--KR------TYDRLN-L-HLPKQF----------- 76 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~--~gg~~~--~~------~~~~~~-~-~~~~~~----------- 76 (423)
..+||||||+|++|+++|..|++.|.+|+|+||.+. .||.-. .+ ...... . ..+..+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 467999999999999999999999999999999863 444211 00 000000 0 000000
Q ss_pred -------------------ccCCCCCCCCCC------C-----CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCC
Q 014522 77 -------------------CQLPKLQFPEDF------P-----EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDET 126 (423)
Q Consensus 77 -------------------~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 126 (423)
+.-...++.... . .......+...+.+.+++.+++++.+++|+++..++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~- 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD- 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-
Confidence 000000110000 0 000135677778888888999999999999998654
Q ss_pred CCe-EEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 127 SGL-WRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 127 ~~~-~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
+. .-|...+.++ ....++++.||+|||.+.
T Consensus 162 -g~v~gv~~~~~~g---~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 162 -GRFVGARAGSAAG---GAERIRAKAVVLAAGGFE 192 (466)
T ss_pred -CeEEEEEEEccCC---ceEEEECCEEEECCCCCC
Confidence 43 2243422111 335789999999999644
No 184
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.70 E-value=1.8e-07 Score=88.66 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=79.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--ccccccCCceeec-----------------------------
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--LWQKRTYDRLNLH----------------------------- 71 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--~~~~~~~~~~~~~----------------------------- 71 (423)
||+|||+|.|||++|..|.+. ++|+|+.|.+...+ .|..+........
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 99999999864421 2322100000000
Q ss_pred -CCCccccC--CCCCCCCCCC-------------------CCCCHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCCCC
Q 014522 72 -LPKQFCQL--PKLQFPEDFP-------------------EYPTKRQFIQYLESYAEK-FEINPRFNECVQSARYDETSG 128 (423)
Q Consensus 72 -~~~~~~~~--~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~ 128 (423)
.+..+..+ .+.+|..+.. .-.++..++..+...+++ .++++..++.+..+-.++...
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 00000000 0112211110 114788899988887776 688888888887776655211
Q ss_pred eEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 129 LWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
.--+.+.+..+ ...++.++.||+|||..+
T Consensus 168 ~~Gv~~~~~~~---~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 168 VAGVLVLNRNG---ELGTFRAKAVVLATGGLG 196 (518)
T ss_pred EeEEEEecCCC---eEEEEecCeEEEecCCCc
Confidence 11244433110 236899999999999643
No 185
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.70 E-value=1.9e-07 Score=92.31 Aligned_cols=130 Identities=20% Similarity=0.214 Sum_probs=77.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccc-ccccC-------Ccee------------ecCCC------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLW-QKRTY-------DRLN------------LHLPK------ 74 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~-------~~~~------------~~~~~------ 74 (423)
|+||+|||||.||++||..+++.|.+|+|+||....+..+ ..... +... ...+.
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4799999999999999999999999999999975432211 00000 0000 00000
Q ss_pred -------ccccCCCCCCCC-------CCC-----CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEE-EEE
Q 014522 75 -------QFCQLPKLQFPE-------DFP-----EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWR-VKT 134 (423)
Q Consensus 75 -------~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-v~~ 134 (423)
....-...+|.. .++ .-.+...+.+.+.+.+.+.+++++.. .++.+..++ +.+. +..
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE
Confidence 000000111110 011 01245678888888888889987655 687776543 4432 333
Q ss_pred cccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 135 ASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 135 ~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
+ + ..+.++.||+|||.++.
T Consensus 158 -~------g-~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 -D------G-ELLKFDATVIATGGFSG 176 (466)
T ss_pred -C------C-EEEEeCeEEECCCcCcC
Confidence 2 3 47999999999997654
No 186
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=3.9e-07 Score=90.45 Aligned_cols=140 Identities=22% Similarity=0.254 Sum_probs=90.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ....+.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 4689999999999999999999999999999876321 00 12445566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCC--CC--CCCCCce
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDI--EG--LADFGGE 176 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~--~g--~~~~~~~ 176 (423)
+.+.+++.+++++.+++|+.++...+.+...+.+.+ ++...+.+|.||+|+| ..|+.+.+ .. +....+.
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~-----g~~~~i~~D~vi~a~G--~~p~~~~l~l~~~~~~~~~g~ 299 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN-----GEEKTLEADKVLVSVG--RRPNTEGIGLENTDIDVEGGF 299 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC-----CceEEEEeCEEEEeeC--CccCCCCCCchhcCceecCCE
Confidence 777777889999999999999752111332233333 1225799999999999 66655322 11 1111121
Q ss_pred eeecCCCCCCCCCCCCEEEEECCCCCHH
Q 014522 177 VIHACDYKSGEKYKGKKVLVVGCGNSGM 204 (423)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~ViG~G~~~~ 204 (423)
+...+.. ....++|..+|....+.
T Consensus 300 -i~Vd~~l---~ts~~~IyAiGD~~~~~ 323 (472)
T PRK05976 300 -IQIDDFC---QTKERHIYAIGDVIGEP 323 (472)
T ss_pred -EEECCCc---ccCCCCEEEeeecCCCc
Confidence 1222221 22346788999775443
No 187
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.70 E-value=2.3e-08 Score=73.14 Aligned_cols=38 Identities=32% Similarity=0.526 Sum_probs=33.5
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecCceeeccc
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPRE 231 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~ 231 (423)
+++|||+|++|+|+|..|++.|.+|+++.|++ ++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGF 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhc
Confidence 68999999999999999999999999999999 443433
No 188
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.68 E-value=2.2e-07 Score=91.63 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHH----cC--CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 93 TKRQFIQYLESYAEK----FE--INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~----~~--~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
....+...+.+.+.+ .| ++++++++|+++....+ +.|.|.+.+ + ++++|+||+|+|+|+.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~------G--~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNR------G--EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECC------C--EEEeCEEEECcChhHH
Confidence 445666667777777 67 67899999999987632 567787765 4 6999999999998764
No 189
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.68 E-value=2e-07 Score=89.46 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=31.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAEC 55 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~ 55 (423)
+||+|||||.+|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999753
No 190
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.68 E-value=4.8e-07 Score=89.64 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=91.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------P--GEDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------C--CCCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012345566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCC--CCC--CCC-CCc
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPD--IEG--LAD-FGG 175 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~--~~g--~~~-~~~ 175 (423)
+.+.+++.+++++.+++|++++..+ +...+.+.+ ++...+.+|.||+|+| ..|+... +.. +.. ..+
T Consensus 217 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~i~~D~vi~a~G--~~p~~~~l~~~~~gl~~~~~g 287 (461)
T TIGR01350 217 VAKALKKKGVKILTNTKVTAVEKND--DQVVYENKG-----GETETLTGEKVLVAVG--RKPNTEGLGLENLGVELDERG 287 (461)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeC-----CcEEEEEeCEEEEecC--CcccCCCCCcHhhCceECCCC
Confidence 6777778899999999999998765 554455433 1225799999999999 6665442 221 111 112
Q ss_pred eeeecCCCCCCCCCCCCEEEEECCCCC
Q 014522 176 EVIHACDYKSGEKYKGKKVLVVGCGNS 202 (423)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~ViG~G~~ 202 (423)
.+ ...+.. ....++|-++|....
T Consensus 288 ~i-~vd~~l---~t~~~~IyaiGD~~~ 310 (461)
T TIGR01350 288 RI-VVDEYM---RTNVPGIYAIGDVIG 310 (461)
T ss_pred cE-eeCCCc---ccCCCCEEEeeecCC
Confidence 12 222222 223478999997653
No 191
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.67 E-value=2.9e-07 Score=93.85 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeC-CCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDE-TSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
....+...+...+.+.|+.++.+++|+++..++ ....+.|.+.+..+ ++...+.+|.||+|+|+|+.
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~t--g~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLT--GKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCC--CcEEEEEeCEEEECCCHhHH
Confidence 455666677777888899999999999987753 22333345432211 13247899999999998764
No 192
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.66 E-value=3.9e-07 Score=90.47 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=77.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc-cccccc---------CCceeecC-------CCccccCCCC--
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS-LWQKRT---------YDRLNLHL-------PKQFCQLPKL-- 82 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~~---------~~~~~~~~-------~~~~~~~~~~-- 82 (423)
+||+|||||++|+.+|..+++.|.+|+++|+....+| ..+... ..++...- ......+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 6899999999999999999999999999998743222 111100 00100000 0000000000
Q ss_pred -CCCCCC-C-CCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 83 -QFPEDF-P-EYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 83 -~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
.-|..+ + ....+..+...+.+.+++. ++.+ ++..|+.+..+.+...+.|.+.+ + ..+.|+.||+|||+
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~I-le~~Vv~li~e~~g~V~GV~t~~------G-~~I~Ad~VILATGt 152 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSL-FQGEVEDLILEDNDEIKGVVTQD------G-LKFRAKAVIITTGT 152 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEEecCCcEEEEEECC------C-CEEECCEEEEccCc
Confidence 001111 1 1236667777888877777 5554 45578777654222445566655 4 58999999999997
Q ss_pred CCC
Q 014522 159 NAE 161 (423)
Q Consensus 159 ~~~ 161 (423)
+..
T Consensus 153 fL~ 155 (617)
T TIGR00136 153 FLR 155 (617)
T ss_pred ccC
Confidence 544
No 193
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.66 E-value=7.8e-07 Score=87.89 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~--~~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------P--GEDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------c--cccHHHHHH
Confidence 4689999999999999999999999999999875321 0 123456667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++.+++++.+++|+.++... ..+.+.... +...+.+|.||+|+| ..|+..
T Consensus 217 l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~~g------~~~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKIFTGAALKGLNSYK--KQALFEYEG------SIQEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEcC--CEEEEEECC------ceEEEEeCEEEEecC--CccCCC
Confidence 7777788899999999999997654 443333221 325799999999999 666543
No 194
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.65 E-value=5.2e-06 Score=79.28 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=31.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
+|++|||+|++|+++|..|.+.|.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
No 195
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.65 E-value=4.2e-07 Score=88.57 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=89.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc------------------------------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR------------------------------------ 63 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~------------------------------------ 63 (423)
+.+||+|||||..|+.+|..++.+|++|+|+|+.+...|+-..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 68899999999999999999999999999999997665543220
Q ss_pred ---------cCCc----eee---------------cCC-CccccCC-CCC-CCC----CC-------CCCCCHHHHHHHH
Q 014522 64 ---------TYDR----LNL---------------HLP-KQFCQLP-KLQ-FPE----DF-------PEYPTKRQFIQYL 101 (423)
Q Consensus 64 ---------~~~~----~~~---------------~~~-~~~~~~~-~~~-~~~----~~-------~~~~~~~~~~~~~ 101 (423)
.++. ..+ ..| ....... ..+ .|. .. ........+....
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 0000 000 000 0000000 000 000 00 0011334455555
Q ss_pred HHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 102 ESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
...+.+.|..+...++|+++..+. +.|.|...+..+ +....++++.||.|||.|+..
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~t--g~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRET--GETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCC--CcEEEEEcCEEEECCCccHHH
Confidence 666777899999999999999887 577788877543 255789999999999987643
No 196
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.65 E-value=4.7e-07 Score=87.23 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=77.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . .....+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------S-LMPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------h-hCCHHHHHH
Confidence 46899999999999999999999999999998764210 0 012344566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
+.+.+++.+++++.+++|+++..+. +.+.+.+.+ + .++.+|.||+|+| ..|+
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~------g-~~i~~D~vI~a~G--~~p~ 240 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDS------G-RSIEVDAVIAAAG--LRPN 240 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcC------C-cEEECCEEEECcC--CCcc
Confidence 6777778899999999999988654 566677655 4 6899999999999 5554
No 197
>PRK07121 hypothetical protein; Validated
Probab=98.65 E-value=9e-07 Score=88.30 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=36.5
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+...||||||+|.+|++||.++++.|.+|+|+||....||
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 3578999999999999999999999999999999877665
No 198
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.64 E-value=4.9e-07 Score=88.89 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 93 TKRQFIQYLESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
....+...+.+.+.+ .+++++++++|+++.... .+.|.+...+... ++..++++|+||+|+|+|+..
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~--g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNT--GEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCC--CceEEEEcCEEEECCCcchHH
Confidence 344555555555543 489999999999998762 2678776421111 111368999999999988743
No 199
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.59 E-value=1.3e-07 Score=92.75 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 92 PTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
..+..+.++|.+.+.+.|++++.+ +|+.+..+++.....|.+.+ + +++++|++|.|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~------g-~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDD------G-RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT------S-EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECC------C-CEEEEeEEEECCCc
Confidence 478999999999999999997665 58888887632222355554 4 78999999999993
No 200
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.59 E-value=8.3e-07 Score=86.11 Aligned_cols=105 Identities=21% Similarity=0.171 Sum_probs=83.4
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
..+.+++|||||+-|+..|..+++.|.+|+|+|+.+.+- + ....++.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------p--~~D~ei~ 217 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------P--GEDPEIS 217 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------C--cCCHHHH
Confidence 357789999999999999999999999999999987431 0 1457788
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+....++.++.++.+++|+.+...+ +...+++.+. ...++++|.|++|+| -+|+..
T Consensus 218 ~~~~~~l~~~gv~i~~~~~v~~~~~~~--~~v~v~~~~g-----~~~~~~ad~vLvAiG--R~Pn~~ 275 (454)
T COG1249 218 KELTKQLEKGGVKILLNTKVTAVEKKD--DGVLVTLEDG-----EGGTIEADAVLVAIG--RKPNTD 275 (454)
T ss_pred HHHHHHHHhCCeEEEccceEEEEEecC--CeEEEEEecC-----CCCEEEeeEEEEccC--CccCCC
Confidence 888888888789999999999998766 3355666652 112789999999999 666655
No 201
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.59 E-value=8.3e-07 Score=87.26 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=76.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 5689999999999999999999999999999976331 00 12445566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++.+++++.+++|+.++.++ +...+..+ + .++.+|.||+|+| ..|...
T Consensus 204 ~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~~-------g-~~i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITFLLNAHTTEVKNDG--DQVLVVTE-------D-ETYRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEecC--CEEEEEEC-------C-eEEEcCEEEEeeC--CCCCcc
Confidence 6777788899999999999998654 44434332 3 5799999999999 666543
No 202
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.59 E-value=9.6e-07 Score=89.30 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=78.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC---CCcccc-------cc--cCCceee-----------cCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAEC---IASLWQ-------KR--TYDRLNL-----------HLPKQ 75 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~---~gg~~~-------~~--~~~~~~~-----------~~~~~ 75 (423)
.++.+|+|||||++|+++|..|+++|++|+|+|+.+. ..|.+. .. ....+.+ .....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3578999999999999999999999999999999641 111111 00 0000000 00000
Q ss_pred c------------ccCCCCCC-CC-CCC--CCCCHHHHHHHHHHHHHHcCCc-eeccceEEEEEEeCCCCeEEEEEcccC
Q 014522 76 F------------CQLPKLQF-PE-DFP--EYPTKRQFIQYLESYAEKFEIN-PRFNECVQSARYDETSGLWRVKTASSA 138 (423)
Q Consensus 76 ~------------~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~v~~~~~~ 138 (423)
. ..+..... .. ..+ ...++..+.+.+.+ ..+.. ++++++|+++...+ +.+.+++.+
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~~i~~g~~V~~I~~~~--d~VtV~~~d-- 231 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGEDVIRNESNVVDFEDSG--DKVTVVLEN-- 231 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCCEEEcCCEEEEEEEeC--CEEEEEECC--
Confidence 0 00000000 00 001 11356666666643 33444 46788999998765 666677665
Q ss_pred CCCCceEEEEeCEEEEccCCCCCC
Q 014522 139 GSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 139 ~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
+ .++.+|.||.|.|.++.-
T Consensus 232 ----G-~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 232 ----G-QRYEGDLLVGADGIWSKV 250 (668)
T ss_pred ----C-CEEEcCEEEECCCCCcHH
Confidence 4 578999999999987643
No 203
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.58 E-value=3.1e-06 Score=84.06 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=78.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------A--AADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------C--cCCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012455566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++.+++++.+++|+.++..+ +...+...+.++ +...+.+|.|++|+| ..|+.+
T Consensus 230 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~~~g---~~~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTDADG---EAQTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEeCCC---ceeEEEcCEEEEccC--CccCCC
Confidence 6666777899999999999998765 444455443211 325799999999999 666654
No 204
>PRK12839 hypothetical protein; Provisional
Probab=98.58 E-value=9.8e-07 Score=89.11 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=37.4
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL 59 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 59 (423)
+..+||+|||+|.+|+++|..+++.|.+|+|+|+....||.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 56889999999999999999999999999999998777764
No 205
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.57 E-value=8.9e-07 Score=87.51 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
....+...+.+.+.+.|++++++++|+++....+ +.|.+++.+..+ ++..++++|+||+|+|.++..
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~v~~~~~~~--g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWTVTVKNTRT--GGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEEEEEeeccC--CceEEEECCEEEECCCcchHH
Confidence 4566777777777788999999999999987532 457676432111 122469999999999987643
No 206
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.57 E-value=7e-07 Score=82.41 Aligned_cols=140 Identities=21% Similarity=0.260 Sum_probs=87.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc------CCCEEEEecCCCCCcccccc------cCCc--------------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ------GVPFVMLERAECIASLWQKR------TYDR-------------------- 67 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~------g~~v~lie~~~~~gg~~~~~------~~~~-------------------- 67 (423)
..+||+|||||||||++|++|.++ .++|+++|+...+||.--.+ .+++
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 468999999999999999999875 36999999998888732221 1111
Q ss_pred eeecCCCccccCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcc----cCCCCC
Q 014522 68 LNLHLPKQFCQLPKL-QFPEDFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTAS----SAGSTK 142 (423)
Q Consensus 68 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~----~~~~~~ 142 (423)
+...+......++-. ++.......++-..+..++-+.++++|++++-+..+..+-++++...--|.+.+ +++.++
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK 234 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK 234 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence 111111111111111 111111122367889999999999999999888777777666554443344443 111011
Q ss_pred c----eEEEEeCEEEEccCCC
Q 014522 143 T----EFEYICRWLVVATGEN 159 (423)
Q Consensus 143 ~----~~~~~~d~vviAtG~~ 159 (423)
. .-.++++.-|.|-|+.
T Consensus 235 d~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 235 DTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred ccccccceecceeEEEecccc
Confidence 1 1368899999999974
No 207
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.55 E-value=6.5e-07 Score=86.77 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=76.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.+. .....+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 468999999999999999999999999999987643210 122345567
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
+.+.+++.+++++.+++|+++.. + +.+.+.+.+ + ..+.+|.||+|+| ..|+
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~------g-~~i~aD~Vv~a~G--~~pn 242 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQS------G-ETLQADVVIYGIG--ISAN 242 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECC------C-CEEECCEEEECCC--CChh
Confidence 77777888999999999999875 2 344466654 4 5799999999999 5554
No 208
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=2.2e-06 Score=84.92 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=79.0
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHH
Confidence 4689999999999999999999999999999876431 00 12455667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++.+++++.+++|++++..+ +.+.+.+.+. ++.+.+.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~g----g~~~~i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDG----GKEETLEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeC----CeeEEEEeCEEEEeeC--CccCCC
Confidence 7777788899999999999998765 4555554431 1225799999999999 666543
No 209
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=2.5e-06 Score=84.57 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=78.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+. +. ...++...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHH
Confidence 4689999999999999999999999999999865321 11 12445567
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++.+++++.+++|+.+.... +...+.+...++ ...++.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~g---~~~~i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSKKDG---KAQELEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEecCC---CeEEEEeCEEEECcC--cccCCC
Confidence 7777788899999999999997654 444455431111 225799999999999 666543
No 210
>PRK08275 putative oxidoreductase; Provisional
Probab=98.54 E-value=2.7e-06 Score=85.92 Aligned_cols=139 Identities=12% Similarity=0.137 Sum_probs=81.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC-Ccccccc--cCCc-ee--ecCCCccc--------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECI-ASLWQKR--TYDR-LN--LHLPKQFC-------------- 77 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~-gg~~~~~--~~~~-~~--~~~~~~~~-------------- 77 (423)
+.+||||||+|.||++||..+++. |.+|+|+||.+.. +|..... .... +. .+.+..++
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 467999999999999999999987 6899999998653 2221110 0000 00 00000000
Q ss_pred ----------------cCCCCCCCCC------------CC----CCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeC
Q 014522 78 ----------------QLPKLQFPED------------FP----EYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDE 125 (423)
Q Consensus 78 ----------------~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 125 (423)
.-.+.++... .. .......+.+.+.+.+.+.+++++.++.|+++..++
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 0000111000 00 012456778888888888899999999999997652
Q ss_pred CCCeE-EEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 126 TSGLW-RVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 126 ~~~~~-~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
+ +.. -+...+..+ +....+.++.||+|||..+.
T Consensus 168 ~-g~v~Gv~~~~~~~--g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 D-GRVAGALGFDCRT--GEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred C-CeEEEEEEEecCC--CcEEEEECCEEEECCCCccc
Confidence 2 322 122211111 12356899999999996443
No 211
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.54 E-value=1.6e-06 Score=86.31 Aligned_cols=134 Identities=20% Similarity=0.173 Sum_probs=80.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccccCCcee--ecCCCc---------------------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL--WQKRTYDRLN--LHLPKQ--------------------- 75 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~--~~~~~~~~~~--~~~~~~--------------------- 75 (423)
..||+|||+|.||++||..+++.|. |+|+||.+..+|. |..+...... -+.+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3599999999999999999999997 9999998654431 1111000000 000000
Q ss_pred ---------cccCCCCCCCC--------------CCC-----CCCCHHHHHHHHHHHHHH-cCCceeccceEEEEEEeCC
Q 014522 76 ---------FCQLPKLQFPE--------------DFP-----EYPTKRQFIQYLESYAEK-FEINPRFNECVQSARYDET 126 (423)
Q Consensus 76 ---------~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~ 126 (423)
...-...+|.. ..+ ...+...+...+.+.+++ .+++++.++.|+++..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~- 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET- 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-
Confidence 00000111110 000 012456778888887777 689999999999987654
Q ss_pred CCeEE-EEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 127 SGLWR-VKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 127 ~~~~~-v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
+... +...+. + +...+.++.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~-~---~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 -GRVVGVWVWNR-E---TVETCHADAVVLATGGAGK 190 (488)
T ss_pred -CEEEEEEEEEC-C---cEEEEEcCEEEECCCcccC
Confidence 4322 333331 1 3357899999999997654
No 212
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.53 E-value=4.2e-07 Score=84.20 Aligned_cols=151 Identities=14% Similarity=0.188 Sum_probs=98.1
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccc-cCC-----ChHHHHHHHHhhcc---HHHHHHHHHHHH
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREI-LGK-----STFELATLMMKWLP---LWLVDKILLILA 261 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~ 261 (423)
..+|+|||+|++|+=+|..+++.|.+|.++.+.+ .+..... .++ .+......+....| ..+...+.++..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~-k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGP-KLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCc-cccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 3579999999999999999999999999999988 3322221 111 12222344444556 555555555555
Q ss_pred HHHhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeCCe----EEEccCcEecccEEEE
Q 014522 262 WFILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCGQ----AELINGEKLDIDAIVL 335 (423)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----v~~~~g~~~~~D~vi~ 335 (423)
+.++.=.+++|+.-.....-.+.-...+...+-+.++..+++.+|++++. |..+..++ +.+.+|+++.||.+|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 54444455555542222111111122334456677888899999999987 77777652 5667888999999999
Q ss_pred cCCCCCC
Q 014522 336 ATGYRSN 342 (423)
Q Consensus 336 a~G~~~~ 342 (423)
|||-...
T Consensus 162 AtGG~S~ 168 (408)
T COG2081 162 ATGGKSW 168 (408)
T ss_pred ecCCcCC
Confidence 9994443
No 213
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=3.5e-06 Score=85.59 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=80.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccccc-CCceeecCCCccc-------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--------LWQKRT-YDRLNLHLPKQFC------------- 77 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--------~~~~~~-~~~~~~~~~~~~~------------- 77 (423)
...||||||+|.||++||..+++.|.+|+|+||....+| ...... .+. +.+..++
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~---ds~~~~~~dt~~~g~~~~d~ 87 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSE---DNWHYHFYDTIKGSDWLGDQ 87 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccc---cChhHhHHHHHHhcCCCCCH
Confidence 467999999999999999999999999999999753332 111000 000 0000000
Q ss_pred -----------------cCCCCCCCC---------CCC-----------------CCCCHHHHHHHHHHHHHHcCCceec
Q 014522 78 -----------------QLPKLQFPE---------DFP-----------------EYPTKRQFIQYLESYAEKFEINPRF 114 (423)
Q Consensus 78 -----------------~~~~~~~~~---------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (423)
.-.+.+|.. ... .-.+...+...+.+.+.+.+++++.
T Consensus 88 ~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~ 167 (591)
T PRK07057 88 DAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFV 167 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEe
Confidence 000011100 000 0113466778888878888999999
Q ss_pred cceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 115 NECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 115 ~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
++.++.+-.+++....-+...+..+ +....+.++.||+|||..+.
T Consensus 168 ~~~~~~Li~~~~g~v~Gv~~~~~~~--g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 168 EWMALDLIRDADGDVLGVTALEMET--GDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred CcEEEEEEEcCCCeEEEEEEEEcCC--CeEEEEECCeEEECCCCccc
Confidence 9999988764321222233322111 13357889999999997554
No 214
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=2.8e-06 Score=85.88 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=81.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccccC-----------Ccee------ecCCC------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL--WQKRTY-----------DRLN------LHLPK------ 74 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~--~~~~~~-----------~~~~------~~~~~------ 74 (423)
+..||||||+|.||++||..+++.|.+|+|+||....++. +..+.. +... +....
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 4679999999999999999999999999999998644431 110000 0000 00000
Q ss_pred -------------ccccCCCCCCCCC--------------C-----CCCCCHHHHHHHHHHHHHHcCCceeccceEEEEE
Q 014522 75 -------------QFCQLPKLQFPED--------------F-----PEYPTKRQFIQYLESYAEKFEINPRFNECVQSAR 122 (423)
Q Consensus 75 -------------~~~~~~~~~~~~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 122 (423)
....--..+|... . ....+...+...+.+.+.+.+++++.++.++++-
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li 163 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV 163 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence 0000001111100 0 0011356677777777777899999999999988
Q ss_pred EeCCCCeEE-EEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 123 YDETSGLWR-VKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 123 ~~~~~~~~~-v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
.++ +... +...+..+ +....+.++.||+|||.+.
T Consensus 164 ~~~--g~v~Gv~~~~~~~--g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 164 TDN--KKVVGIVAMQMKT--LTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEC--CEEEEEEEEECCC--CeEEEEEeCeEEECCCccc
Confidence 754 4422 33332211 1335789999999999654
No 215
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.52 E-value=2.1e-06 Score=87.14 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=78.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccccc----CCcee-------------ec------
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--------LWQKRT----YDRLN-------------LH------ 71 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--------~~~~~~----~~~~~-------------~~------ 71 (423)
||||||+|.||++||..+++.|.+|+|+||....+| .+.... .+... .+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 799999999999999999999999999999765433 111000 00000 00
Q ss_pred ----CCCc--cccCCCCCCC---C--------C--------CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCC
Q 014522 72 ----LPKQ--FCQLPKLQFP---E--------D--------FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDET 126 (423)
Q Consensus 72 ----~~~~--~~~~~~~~~~---~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 126 (423)
.+.. ...-...+|. + . +..-.....+...+.+.+.+.+++++.++.|+++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~- 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD- 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-
Confidence 0000 0000001110 0 0 00111345677777777778899999999999987654
Q ss_pred CCeEE-EEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 127 SGLWR-VKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 127 ~~~~~-v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
+... +...+..+ +....+.++.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~~~--g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 160 -GRVRGVVAYDLKT--GEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred -CEEEEEEEEECCC--CcEEEEECCeEEECCCcccC
Confidence 4421 22211111 12347899999999996553
No 216
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.50 E-value=2.1e-06 Score=85.02 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=78.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHH
Confidence 4789999999999999999999999999999876331 00 12345566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++.+++++.+++|+.+..++ +.+.+++.... +.+++.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~~~----~~~~i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEKPG----GQGEVEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEeCC----CceEEEeCEEEEeEC--CCcCCC
Confidence 7777778899999999999998654 44445543211 226899999999999 666544
No 217
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.50 E-value=2.9e-06 Score=86.47 Aligned_cols=139 Identities=19% Similarity=0.144 Sum_probs=82.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccccCCcee----ecCCCcc-----------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL--WQKRTYDRLN----LHLPKQF----------------- 76 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~--~~~~~~~~~~----~~~~~~~----------------- 76 (423)
...||||||+|.||++||..+++.|.+|+|+||....+|. +..+...... -+.+..+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 4679999999999999999999999999999998655441 1110000000 0000000
Q ss_pred -------------ccCCCCCCCCC---------CCC------------------CCCHHHHHHHHHHHHHHcCCceeccc
Q 014522 77 -------------CQLPKLQFPED---------FPE------------------YPTKRQFIQYLESYAEKFEINPRFNE 116 (423)
Q Consensus 77 -------------~~~~~~~~~~~---------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (423)
..--+.+|... +.. -.+...+...+.+.+.+.+++++.++
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 00001111000 000 01456788888888888899999999
Q ss_pred eEEEEEEeCCCCeE-EEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 117 CVQSARYDETSGLW-RVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 117 ~v~~v~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
.++++-.+++ +.. -+...+..+ +....+.++.||+|||.+..
T Consensus 188 ~~~~Li~~~~-g~v~Gv~~~~~~~--g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 188 FALDLIMDED-GECRGVIAMSMED--GSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred EEEEEEECCC-CEEEEEEEEECCC--CeEEEEECCcEEEeCCCCcc
Confidence 9999776322 332 132212111 13457899999999997554
No 218
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.50 E-value=2.1e-06 Score=83.98 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=33.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+.+||||||+|.||++||..+. .|.+|+|+||.+..|+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 3579999999999999999985 6999999999876654
No 219
>PRK06370 mercuric reductase; Validated
Probab=98.50 E-value=3e-06 Score=83.99 Aligned_cols=104 Identities=21% Similarity=0.211 Sum_probs=78.0
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~--~~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------P--REDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------c--ccCHHHHHH
Confidence 4789999999999999999999999999999876431 0 022445566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++.+++++.+++|.+++..+ +...+.+.... +...+.+|.||+|+| ..|+..
T Consensus 218 l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~----~~~~i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDVRLNAECIRVERDG--DGIAVGLDCNG----GAPEITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeCC----CceEEEeCEEEECcC--CCcCCC
Confidence 7777788899999999999998754 33334432111 226799999999999 666543
No 220
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=2.4e-06 Score=87.36 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=33.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI 56 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~ 56 (423)
+..||+|||+|.||++||..+++.|.+|+|+|+...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999999999999999986554
No 221
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.50 E-value=2.7e-06 Score=86.85 Aligned_cols=140 Identities=18% Similarity=0.107 Sum_probs=82.0
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc--cccccCCce----eecCC---------------------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL--WQKRTYDRL----NLHLP--------------------- 73 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~--~~~~~~~~~----~~~~~--------------------- 73 (423)
..||||||+|.||++||..+++.|.+|+|+||....+|. +..+..... .-+.+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 579999999999999999999999999999998654431 110000000 00000
Q ss_pred -------Ccc--ccCCCCCCCCC---------CC------------------CCCCHHHHHHHHHHHHHHcCCceeccce
Q 014522 74 -------KQF--CQLPKLQFPED---------FP------------------EYPTKRQFIQYLESYAEKFEINPRFNEC 117 (423)
Q Consensus 74 -------~~~--~~~~~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (423)
..+ ..-.+.+|... +. .-.+...+...+.+.+.+.+++++.++.
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 209 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF 209 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 000 00001112100 00 0014566778887878788999999999
Q ss_pred EEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 118 VQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 118 v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
++.+-.+++....-+...+..+ +....+.++.||+|||.+...
T Consensus 210 ~~~Li~~~~g~v~Gv~~~~~~~--g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 210 ALDLIMDSDGACQGVIALNMED--GTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEcCCCEEEEEEEEEcCC--CeEEEEEcCeEEECCCCCccc
Confidence 9987654221222233322111 134678999999999976543
No 222
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.50 E-value=1.5e-06 Score=85.05 Aligned_cols=60 Identities=27% Similarity=0.248 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeE-EEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLW-RVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
....+...+.+.+.+.|++++.+++|+++...+ +.+ .|++.+ .++.+|.||+|+|.++..
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~--------~~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGG--------GVITADAYVVALGSYSTA 259 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCC--------cEEeCCEEEECCCcchHH
Confidence 345666777777888899999999999998765 443 344443 378999999999987643
No 223
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.49 E-value=2.6e-06 Score=86.78 Aligned_cols=138 Identities=15% Similarity=0.125 Sum_probs=79.0
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCc-cccccc--CC-ceee-cCCCcc----------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIAS-LWQKRT--YD-RLNL-HLPKQF---------------- 76 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~gg-~~~~~~--~~-~~~~-~~~~~~---------------- 76 (423)
...||||||||.||++||..+++. |.+|+|+||....++ .+.... .. .+.. +.+..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 357999999999999999999998 999999999764322 111110 00 0000 000000
Q ss_pred --------------ccCCCCCCCCC----------CCCCCCHHHHHHHHHHHHHHcC-CceeccceEEEEEEeCCCCe-E
Q 014522 77 --------------CQLPKLQFPED----------FPEYPTKRQFIQYLESYAEKFE-INPRFNECVQSARYDETSGL-W 130 (423)
Q Consensus 77 --------------~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~-~ 130 (423)
..-.+.+|... .........+...+...+.+.+ ++++.++.|+++..++ +. .
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~ 167 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIA 167 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEE
Confidence 00001111100 0001244566666767776665 9999999999987554 33 2
Q ss_pred EEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 131 RVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 131 ~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
-+...+..+ +....+.++.||+|||.++.
T Consensus 168 Gv~~~~~~~--g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 168 GAVGFSVRE--NKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEEccC--CcEEEEECCEEEECCCchhh
Confidence 122211111 13357899999999997554
No 224
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.49 E-value=1.7e-06 Score=85.65 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=78.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------S--FLDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------C--cCCHHHHHH
Confidence 5789999999999999999999999999999876331 0 023455667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.+++.+++++.+++|+.+...+ +.+.+++.+ + .++.+|.||+|+| ..|+.
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~------g-~~i~~D~vi~a~G--~~p~~ 274 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKS------G-KKIKADCLLYANG--RTGNT 274 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECC------C-CEEEeCEEEEeec--CCccc
Confidence 7777778899999999999998654 455566544 4 5799999999999 55554
No 225
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=2.4e-06 Score=87.36 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=34.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA 57 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g 57 (423)
+.+||||||+|.||++||..+++.|.+|+|+||....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 46799999999999999999999999999999986543
No 226
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.49 E-value=1.1e-06 Score=83.30 Aligned_cols=131 Identities=23% Similarity=0.269 Sum_probs=92.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcC-------------CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQG-------------VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDF 88 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g-------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (423)
-+++|||||+.|+.+|-+|+..- .+|+|+|+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 46999999999999999998641 3899999877431
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCC
Q 014522 89 PEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIE 168 (423)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~ 168 (423)
+ .....+.+|.++..++.|++++.++.|++++.+. |++.+ +.+.+.++.+|.|+|....|..-.+-
T Consensus 205 p--~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~------g~~~I~~~tvvWaaGv~a~~~~~~l~ 270 (405)
T COG1252 205 P--MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKD------GEEEIPADTVVWAAGVRASPLLKDLS 270 (405)
T ss_pred c--CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEcc------CCeeEecCEEEEcCCCcCChhhhhcC
Confidence 1 2456677899999999999999999999998765 78776 42369999999999965555443432
Q ss_pred CCCCC-CceeeecCCCCCCCCCCCCEEEEECCC
Q 014522 169 GLADF-GGEVIHACDYKSGEKYKGKKVLVVGCG 200 (423)
Q Consensus 169 g~~~~-~~~~~~~~~~~~~~~~~~~~v~ViG~G 200 (423)
|++.. .+++...... . ....++|-++|..
T Consensus 271 ~~e~dr~Grl~V~~~L-~--~~~~~~IFa~GD~ 300 (405)
T COG1252 271 GLETDRRGRLVVNPTL-Q--VPGHPDIFAAGDC 300 (405)
T ss_pred hhhhccCCCEEeCCCc-c--cCCCCCeEEEecc
Confidence 23322 3444333222 2 1234567787754
No 227
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=2.5e-06 Score=86.08 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=80.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC-CCcc--cccccCCcee--ecCCC--------------------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAEC-IASL--WQKRTYDRLN--LHLPK-------------------- 74 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~-~gg~--~~~~~~~~~~--~~~~~-------------------- 74 (423)
...||||||+|.||++||..+ +.|.+|+|+||... .||. +....+.... -+.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 467999999999999999999 88999999999754 3331 1110000000 00000
Q ss_pred --------c--cccCCCCCCCC-----------CCCCC--------CCHHHHHHHHHHHHHHcCCceeccceEEEEEEeC
Q 014522 75 --------Q--FCQLPKLQFPE-----------DFPEY--------PTKRQFIQYLESYAEKFEINPRFNECVQSARYDE 125 (423)
Q Consensus 75 --------~--~~~~~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 125 (423)
. ...-...+|.. ....+ .+...+...+.+.+.+.+++++.++.++++..++
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC
Confidence 0 00000111110 00001 1356777778787778899999999999987654
Q ss_pred CCC-eEEEEEcc-cCCCCCceEEEEeCEEEEccCCCC
Q 014522 126 TSG-LWRVKTAS-SAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 126 ~~~-~~~v~~~~-~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
. + ..-+...+ .++ ....+.++.||+|||...
T Consensus 165 ~-~~v~Gv~~~~~~~g---~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 165 N-REVIGAIFLDLRNG---EIFPIYAKATILATGGAG 197 (543)
T ss_pred C-cEEEEEEEEECCCC---cEEEEEcCcEEECCCCCC
Confidence 2 3 22223222 111 335789999999999654
No 228
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.49 E-value=1.1e-06 Score=85.11 Aligned_cols=39 Identities=31% Similarity=0.404 Sum_probs=35.1
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA 57 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g 57 (423)
+++.||+|||||.+|+++|+.|+++|.+|+++|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 467899999999999999999999999999999876443
No 229
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=2.3e-06 Score=86.82 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=80.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCc--cccccc----CCcee-ecCCCcc---------------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIAS--LWQKRT----YDRLN-LHLPKQF--------------- 76 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg--~~~~~~----~~~~~-~~~~~~~--------------- 76 (423)
..||+|||||.||++||..+++.| .+|+|+||....|+ .+..+. ..... .+.+..+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 469999999999999999999874 89999999865443 111100 00000 0000000
Q ss_pred ---------------ccCCCCCCCCC-------------------CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEE
Q 014522 77 ---------------CQLPKLQFPED-------------------FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSAR 122 (423)
Q Consensus 77 ---------------~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 122 (423)
..--..+|+.. .+.-.+...+...+.+.+.+.+++++.++.|+++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 00001111100 01112456788888887888899999999999987
Q ss_pred EeCCCCeEE-EEE-cccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 123 YDETSGLWR-VKT-ASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 123 ~~~~~~~~~-v~~-~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
.++ +... +.. ...+ +....+.++.||+|||.++.
T Consensus 163 ~~~--g~v~Gv~~~~~~~---g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 163 LED--NQAKGVVMYHIAD---GRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEC--CEEEEEEEEEcCC---CeEEEEECCEEEECCCCCcC
Confidence 554 3311 221 1111 13346899999999997654
No 230
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=4.6e-06 Score=84.88 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=81.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccccc---CCcee------ecCCCc-------
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--------LWQKRT---YDRLN------LHLPKQ------- 75 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--------~~~~~~---~~~~~------~~~~~~------- 75 (423)
...||||||||.||++||..+++.|.+|+|+||....++ .+.... .+... +.....
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 90 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAI 90 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHH
Confidence 467999999999999999999999999999999754332 111000 00000 000000
Q ss_pred ------------cccCCCCCCC---C------CCC------------------CCCCHHHHHHHHHHHHHHcCCceeccc
Q 014522 76 ------------FCQLPKLQFP---E------DFP------------------EYPTKRQFIQYLESYAEKFEINPRFNE 116 (423)
Q Consensus 76 ------------~~~~~~~~~~---~------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (423)
...-.+.+|. + ... .-.+...+...+.+.+.+.+++++.++
T Consensus 91 ~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~ 170 (598)
T PRK09078 91 EYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEY 170 (598)
T ss_pred HHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeE
Confidence 0000001110 0 000 011456778888888888899999999
Q ss_pred eEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 117 CVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 117 ~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
.++++-.+++....-+...+..+ +....+.++.||+|||.+..
T Consensus 171 ~v~~Li~~~~g~v~Gv~~~~~~~--g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 171 FALDLIMDDGGVCRGVVAWNLDD--GTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred EEEEEEEcCCCEEEEEEEEECCC--CcEEEEEcCEEEECCCCCcc
Confidence 99998764321222233211111 13357899999999997554
No 231
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.46 E-value=1.9e-06 Score=86.67 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=35.8
Q ss_pred ccccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 16 RRCIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 16 ~~~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+..+..+||||||+|.||++||..+. .|.+|+|+||.+..||
T Consensus 4 ~~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 4 TILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 34456789999999999999999996 4999999999876554
No 232
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=5.3e-06 Score=84.17 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=81.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc--------cccc-c--cCCcee------------e-------
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS--------LWQK-R--TYDRLN------------L------- 70 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg--------~~~~-~--~~~~~~------------~------- 70 (423)
..||||||+|.||++||..+++.|.+|+|+||....+| .+.. . ..+... +
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 56999999999999999999999999999999854433 1110 0 000000 0
Q ss_pred ----cCCCcc--ccCCCCCCCCC---------CCC-----------------CCCHHHHHHHHHHHHHHcCCceeccceE
Q 014522 71 ----HLPKQF--CQLPKLQFPED---------FPE-----------------YPTKRQFIQYLESYAEKFEINPRFNECV 118 (423)
Q Consensus 71 ----~~~~~~--~~~~~~~~~~~---------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 118 (423)
..+..+ ..--+.+|... ... -.+...+...+.+.+.+.+++++.++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 000000 00001111100 000 0145677888877777889999999999
Q ss_pred EEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 119 QSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 119 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
+.+-.+++....-+...+..+ +....+.++.||+|||.+..
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~~~--g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICIET--GEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEECCCCEEEEEEEEEcCC--CcEEEEEcCeEEECCCCccc
Confidence 998764321222233211111 13357899999999997553
No 233
>PRK06116 glutathione reductase; Validated
Probab=98.45 E-value=2.6e-06 Score=84.13 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=78.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------R--GFDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------c--ccCHHHHHH
Confidence 4789999999999999999999999999999875321 0 022455667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++.+++++.+++|.+++..++ +.+.+.+.+ + .++.+|.||+|+| ..|+..
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~v~~~~------g-~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNAD-GSLTLTLED------G-ETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCC-ceEEEEEcC------C-cEEEeCEEEEeeC--CCcCCC
Confidence 77777888999999999999986542 335566654 4 5799999999999 666543
No 234
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.44 E-value=2.5e-07 Score=91.81 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=45.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHL 72 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~ 72 (423)
+++||||||||++||+||..|+++|++|+|+|++..+||..+...+.+++.+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~ 54 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDT 54 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEecc
Confidence 46899999999999999999999999999999999999977765555555443
No 235
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.44 E-value=3.8e-06 Score=85.28 Aligned_cols=39 Identities=26% Similarity=0.506 Sum_probs=36.0
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
...||||||+|++|+++|..++++|.+|+|+||....||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 578999999999999999999999999999999887665
No 236
>PRK14694 putative mercuric reductase; Provisional
Probab=98.43 E-value=3.2e-06 Score=83.84 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=75.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|++.|.+|+++++...++ ....++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------------------QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------------------CCCHHHHHH
Confidence 4689999999999999999999999999998642110 022445667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++.+++++.++.|..++.++ +.+.+.+.+ + ++.+|.||+|+| ..|+..
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~~------~--~i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYNG--REFILETNA------G--TLRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEECC------C--EEEeCEEEEccC--CCCCcC
Confidence 7777788899999999999997654 454454432 3 699999999999 555543
No 237
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.42 E-value=1e-05 Score=82.27 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=36.7
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+..+||+|||+|.+|+++|..+++.|.+|+|||+.+..||
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 4688999999999999999999999999999999876665
No 238
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.42 E-value=3.2e-06 Score=83.26 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=77.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 4679999999999999999999999999999865321 00 12445566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.+++.+++++.+++|.+++..+ +...+++.+ + .++.+|.||+|+| ..|+.
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~------g-~~i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSH------G-EEIVADVVLFATG--RSPNT 265 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcC------C-cEeecCEEEEeeC--CCcCC
Confidence 6777778899999999999997654 445566544 4 5799999999999 55554
No 239
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.42 E-value=4.1e-06 Score=82.53 Aligned_cols=103 Identities=18% Similarity=0.060 Sum_probs=78.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~--~~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------R--SFDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999999876431 0 123445566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++.+++++.+++|+.+..... +...+.+.+ +...+.+|.||+|+| ..|+..
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~v~~~~------g~~~i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVE-GKLVIHFED------GKSIDDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCC-ceEEEEECC------CcEEEEcCEEEEeeC--CCcCcc
Confidence 77777788999999999999986532 334455554 435799999999999 666543
No 240
>PRK07846 mycothione reductase; Reviewed
Probab=98.42 E-value=5.3e-06 Score=81.70 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=74.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~--~~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------R--HLDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------c--ccCHHHHHH
Confidence 5789999999999999999999999999999876321 0 012334455
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.. +.+++++.+++|++++..+ +...+.+.+ + .++.+|.||+|+| ..|+..
T Consensus 213 l~~l~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~~------g-~~i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 213 FTELA-SKRWDVRLGRNVVGVSQDG--SGVTLRLDD------G-STVEADVLLVATG--RVPNGD 265 (451)
T ss_pred HHHHH-hcCeEEEeCCEEEEEEEcC--CEEEEEECC------C-cEeecCEEEEEEC--CccCcc
Confidence 55443 3578899999999998654 444455543 4 5799999999999 666554
No 241
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.41 E-value=1.7e-06 Score=85.32 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=37.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCcccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ----GVPFVMLERAECIASLWQ 61 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~~ 61 (423)
...+++|||||.|||++|..|.+. |.+|+|+|+.+.+||...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 357899999999999999999996 689999999999998543
No 242
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.40 E-value=8.8e-06 Score=82.53 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=36.5
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+...||||||+|.+|+++|+.+++.|.+|+|+|+.+..||
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 3567999999999999999999999999999999987665
No 243
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.40 E-value=2.8e-06 Score=83.75 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=75.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ....++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~-~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PD-SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------ch-hcCHHHHHH
Confidence 4689999999999999999999999999999865321 00 123556777
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
+.+.+++.+++++.+++|++++.++ ....+.+.+ ..+.+|.||+|+| ..|+
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~--------~~i~~d~vi~a~G--~~p~ 247 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGED--KVEGVVTDK--------GEYEADVVIVATG--VKPN 247 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCC--cEEEEEeCC--------CEEEcCEEEECcC--CCcC
Confidence 8888888999999999999996432 333344432 3699999999999 5554
No 244
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.40 E-value=5.3e-06 Score=84.17 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=33.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg 58 (423)
...||||||+|.||++||..+++.| .+|+|+||....++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 4579999999999999999999874 79999999865544
No 245
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=8.8e-07 Score=84.87 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=74.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC----------CCCcccccccCCcee-------ecCCCccc-----c
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE----------CIASLWQKRTYDRLN-------LHLPKQFC-----Q 78 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~----------~~gg~~~~~~~~~~~-------~~~~~~~~-----~ 78 (423)
.+||+|||||.||+.||...+|.|.++.++--+. .+||.-..+...++- ..+..... .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 4899999999999999999999999999998652 223322111110000 00000000 0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccC
Q 014522 79 LPKLQFPEDFPEYPTKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATG 157 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG 157 (423)
.+.-|.......-..+..+..+++...+.. ++. .++..|+++..++.....-|.+.. | ..+.|+.||++||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~-l~q~~v~dli~e~~~~v~GV~t~~------G-~~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH-LLQGEVEDLIVEEGQRVVGVVTAD------G-PEFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce-ehHhhhHHHhhcCCCeEEEEEeCC------C-CeeecCEEEEeec
Confidence 000010000001123444555566655554 344 556668887775532234466665 5 7999999999999
Q ss_pred CCC
Q 014522 158 ENA 160 (423)
Q Consensus 158 ~~~ 160 (423)
.+.
T Consensus 156 TFL 158 (621)
T COG0445 156 TFL 158 (621)
T ss_pred ccc
Confidence 643
No 246
>PLN02507 glutathione reductase
Probab=98.40 E-value=4.3e-06 Score=83.30 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=78.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+- + ....++...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------R--GFDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------c--ccCHHHHHH
Confidence 5689999999999999999999999999999865321 0 123455666
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++.+++++.+++|+++...+ +...+.+.+ + .++.+|.|++|+| ..|+..
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~------g-~~i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDH------G-EEFVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECC------C-cEEEcCEEEEeec--CCCCCC
Confidence 7777788899999999999998654 444455543 4 5799999999999 566543
No 247
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.40 E-value=2.3e-06 Score=78.34 Aligned_cols=141 Identities=22% Similarity=0.190 Sum_probs=79.0
Q ss_pred cccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-----------CCCccccc---c-----------cCCceeec
Q 014522 17 RCIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE-----------CIASLWQK---R-----------TYDRLNLH 71 (423)
Q Consensus 17 ~~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~-----------~~gg~~~~---~-----------~~~~~~~~ 71 (423)
..+...||+|||||.+|.++|+.|++.|.+|++|||+- .+||.... + .-.+..+.
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~if 120 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIF 120 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEE
Confidence 34567899999999999999999999999999999972 23331110 0 00000000
Q ss_pred CCCc--cccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEE
Q 014522 72 LPKQ--FCQLPKLQFPEDFPEYP-TKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEY 147 (423)
Q Consensus 72 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (423)
.... ...++...++++..+-. +...+.+-+++.+... +++ ..+..|.++-.++. -.--|++.++.+ ++.+.
T Consensus 121 k~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~-~eeGtV~sLlee~g-vvkGV~yk~k~g---ee~~~ 195 (509)
T KOG1298|consen 121 KDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVR-LEEGTVKSLLEEEG-VVKGVTYKNKEG---EEVEA 195 (509)
T ss_pred eCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeE-EeeeeHHHHHhccC-eEEeEEEecCCC---ceEEE
Confidence 0000 11122222333222111 3344555555555444 444 44555666544331 112256666544 55788
Q ss_pred EeCEEEEccCCCCCC
Q 014522 148 ICRWLVVATGENAER 162 (423)
Q Consensus 148 ~~d~vviAtG~~~~~ 162 (423)
.|-.-|+|.|++++-
T Consensus 196 ~ApLTvVCDGcfSnl 210 (509)
T KOG1298|consen 196 FAPLTVVCDGCFSNL 210 (509)
T ss_pred ecceEEEecchhHHH
Confidence 899999999998753
No 248
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=8.9e-06 Score=82.64 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=33.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA 57 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g 57 (423)
+.||||||+|.||++||..+++.|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4599999999999999999999999999999876543
No 249
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=5.5e-06 Score=82.02 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=76.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. +. ...++...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHH
Confidence 5789999999999999999999999999999865321 11 12345566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+..++.+++++.+++|+++...+ +...+.+....+ +....+.+|.|++|+| ..|+.
T Consensus 221 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~--g~~~~i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 221 LQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAG--GAAETLQADYVLVAIG--RRPYT 278 (466)
T ss_pred HHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCC--CceeEEEeCEEEEccC--Ccccc
Confidence 7777778899999999999997654 343344331110 1236799999999999 56554
No 250
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.39 E-value=4.6e-06 Score=82.54 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=78.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|..|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 223 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PG--EDADAAEV 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CC--CCHHHHHH
Confidence 4689999999999999999999999999999865331 11 12345567
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++.+++++.+++|++++..+ +.+.+.+.+ + ..+.+|.||+|+| ..|+..
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~------g-~~l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTG--DGVVVTLTD------G-RTVEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECC------C-cEEEecEEEEeec--CCcCCC
Confidence 7777888899999999999997654 445566544 4 5799999999999 566543
No 251
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=5.4e-06 Score=84.25 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=34.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcC---CCEEEEecCCCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQG---VPFVMLERAECIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g---~~v~lie~~~~~gg 58 (423)
...||+|||+|.||++||..+++.| .+|+|+||....++
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 4679999999999999999999998 89999999875544
No 252
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=8.7e-06 Score=82.75 Aligned_cols=67 Identities=19% Similarity=0.038 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCC---CCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDET---SGLWRVKTASSAGSTKTEFEYICRWLVVATGENAE 161 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 161 (423)
+...+...+.+.+.+.+++++.++.|+++..+++ ....-+...+..+ +....+.++.||+|||.++.
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~--g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELAT--GEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCC--CeEEEEEeCeEEECCCCCcc
Confidence 4567888888888888999999999999865431 1221122211111 13347899999999997553
No 253
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.39 E-value=3e-06 Score=84.60 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=32.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
..||||||+|.||++||.++++ |.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 5699999999999999999976 999999999876554
No 254
>PRK14727 putative mercuric reductase; Provisional
Probab=98.39 E-value=4.7e-06 Score=82.81 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=75.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+. ....++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHH
Confidence 4689999999999999999999999999998743110 123445667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.+++.+++++.+++|+.+...+ +.+.+.+.+ + ++.+|.||+|+| ..|+.
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~------g--~i~aD~VlvA~G--~~pn~ 285 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGH------G--ELRAEKLLISTG--RHANT 285 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcC------C--eEEeCEEEEccC--CCCCc
Confidence 7777888899999999999998655 455555443 3 589999999999 55544
No 255
>PLN02815 L-aspartate oxidase
Probab=98.39 E-value=6.5e-06 Score=83.30 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=34.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
...||||||+|.||++||..+++.| +|+|+||....||
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 4679999999999999999999999 9999999876554
No 256
>PTZ00367 squalene epoxidase; Provisional
Probab=98.37 E-value=2.6e-06 Score=85.49 Aligned_cols=36 Identities=33% Similarity=0.407 Sum_probs=33.5
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
...+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 357899999999999999999999999999999875
No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.37 E-value=9.2e-06 Score=82.64 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=30.7
Q ss_pred eEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 014522 24 PVIVGAGPSGLATAACLRDQGVPFVMLERAECI 56 (423)
Q Consensus 24 vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~ 56 (423)
|||||+|.||++||..+++.|.+|+|+||...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 799999999999999999999999999998733
No 258
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.36 E-value=1.3e-05 Score=80.90 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=36.7
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL 59 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 59 (423)
+..+||||||+| +|+++|..+++.|.+|+|+||.+..||.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 568899999999 8999999999999999999999877773
No 259
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.36 E-value=3.9e-06 Score=82.26 Aligned_cols=99 Identities=30% Similarity=0.371 Sum_probs=75.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. + .....+.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~--~~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------K--LFDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------c--ccCHHHHHH
Confidence 46899999999999999999999999999998753210 0 012455667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.+++.+++++.++.|.+++.+. .. +.+.+ + ..+.+|.||+|+| ..|..
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~--~~--v~~~~------g-~~i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE--RV--KVFTS------G-GVYQADMVILATG--IKPNS 235 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC--CE--EEEcC------C-CEEEeCEEEECCC--ccCCH
Confidence 7777888899999999999997543 32 34433 3 5799999999999 55543
No 260
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.36 E-value=6.9e-06 Score=86.36 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=77.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|.+.|.+|+|++..+.+. + ..........
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~-~~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------A-EQLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------h-hhcCHHHHHH
Confidence 4579999999999999999999999999999865321 0 0123445567
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+..++.+++++.++.++++..+.......+.+.+ + ..+.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d------G-~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD------G-SELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC------C-CEEEcCEEEECCC--cccCc
Confidence 777788889999999999999754322333355554 4 5899999999999 66654
No 261
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.36 E-value=3.8e-06 Score=83.22 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcC-CceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 95 RQFIQYLESYAEKFE-INPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
..+...+.+.+++.+ ++++++++|+++....+ +.|.+++.+..+ +...++++++||+|+|.++.+
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~v~~~~~~~--G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWTVTVKDLKT--GEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEEEEEEEcCC--CceEEEEcCEEEECCCcchHH
Confidence 455666666677776 79999999999987542 457776542111 121369999999999987643
No 262
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.35 E-value=6.9e-06 Score=81.40 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=76.0
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+.+. +. ...++...
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHH
Confidence 4689999999999999999999999999999876431 10 22445556
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++. +.++.+++|+.+...+ +...+++.+..+ ...++.+|.||+|+| ..|+..
T Consensus 221 ~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEGKKA---PAEPQRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEeCCC---cceEEEeCEEEEeec--ccccCC
Confidence 66666666 8889999999987654 444455443111 125799999999999 666553
No 263
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.35 E-value=5.3e-06 Score=83.06 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=34.9
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+...||||||+| +|++||.++++.|.+|+|+||.+..||
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 357799999999 999999999999999999999876554
No 264
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=6.2e-06 Score=81.17 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=76.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ....+.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PR--EDRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CC--cCHHHHHH
Confidence 4689999999999999999999999999999865321 11 12445667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.+++.+++++.+++|+++..++ +.+.+.+.+ + ++.+|.|++|+| ..|+.
T Consensus 205 l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~------g--~i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 205 IATILRDQGVDIILNAHVERISHHE--NQVQVHSEH------A--QLAVDALLIASG--RQPAT 256 (441)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcC------C--eEEeCEEEEeec--CCcCC
Confidence 7777888899999999999998654 454454433 3 589999999999 55554
No 265
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=1.8e-05 Score=79.93 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=36.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+..+||+|||+|.+|+++|..+++.|.+|+|||+.+..||
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3478999999999999999999999999999999876665
No 266
>PRK13748 putative mercuric reductase; Provisional
Probab=98.35 E-value=5.6e-06 Score=84.16 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=76.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+ + ....++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~--~~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------F--REDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------c--ccCHHHHHH
Confidence 468999999999999999999999999999975311 0 123445667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++.+++++.++.|+.+...+ +.+.+.+.+ + .+.+|.||+|+| ..|+..
T Consensus 316 l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~------~--~i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGH------G--ELRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecC------C--eEEeCEEEEccC--CCcCCC
Confidence 7777788899999999999987654 555455433 3 699999999999 666543
No 267
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.34 E-value=1.5e-06 Score=91.00 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=72.6
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC---C-cc-cccccCCceeecCC-------Ccccc-------CCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECI---A-SL-WQKRTYDRLNLHLP-------KQFCQ-------LPK 81 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~---g-g~-~~~~~~~~~~~~~~-------~~~~~-------~~~ 81 (423)
+|+|||||++|+++|..|++. |++|+|+|+.+.. | |. ...+....+....+ ..+.. ...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 8999999998642 2 10 01100000000000 00000 000
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCC
Q 014522 82 LQFPEDFPE--YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGEN 159 (423)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~ 159 (423)
......... ...+..+.+.|.+.+.+.+++++++++|+++. . ...++|.||.|+|..
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~--------------------~-~~~~~D~VVgADG~~ 140 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQ--------------------A-LAADADLVIASDGLN 140 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchh--------------------h-hhcCCCEEEEcCCCC
Confidence 000000011 24789999999999999999999998875431 0 135789999999976
Q ss_pred CC
Q 014522 160 AE 161 (423)
Q Consensus 160 ~~ 161 (423)
+.
T Consensus 141 S~ 142 (765)
T PRK08255 141 SR 142 (765)
T ss_pred HH
Confidence 63
No 268
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=1.7e-05 Score=78.58 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=76.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHHH
Confidence 57899999999999999999999999999998764310 123456667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+..++. ++++.+++|.+++.... ....++..+. +..++.+|.||+|+| ..|+..
T Consensus 216 ~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~-----~~~~i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 216 AQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGG-----KTETIEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCC-----ceEEEEeCEEEEccC--CccCCC
Confidence 77777777 99999999999976542 2333332221 336799999999999 666654
No 269
>PRK07208 hypothetical protein; Provisional
Probab=98.33 E-value=1.3e-06 Score=87.01 Aligned_cols=48 Identities=33% Similarity=0.526 Sum_probs=42.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDR 67 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~ 67 (423)
+++||+|||||++||++|..|.++|++|+|+|+.+.+||.+......+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g 50 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG 50 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC
Confidence 577999999999999999999999999999999999999876644333
No 270
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.33 E-value=1.1e-05 Score=81.67 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=33.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIAS 58 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~gg 58 (423)
..||+|||+|.||++||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 46999999999999999999987 579999999865554
No 271
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.33 E-value=1.3e-05 Score=79.12 Aligned_cols=99 Identities=18% Similarity=0.141 Sum_probs=73.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------~~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR---------------------------------HLDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc---------------------------------ccCHHHHHH
Confidence 57899999999999999999999999999998753210 012333444
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.. +.+++++.+++|++++.++ +...+++.+ + .++.+|.|++|+| ..|+.
T Consensus 216 l~~~~-~~gI~i~~~~~V~~i~~~~--~~v~v~~~~------g-~~i~~D~vl~a~G--~~pn~ 267 (452)
T TIGR03452 216 FTEIA-KKKWDIRLGRNVTAVEQDG--DGVTLTLDD------G-STVTADVLLVATG--RVPNG 267 (452)
T ss_pred HHHHH-hcCCEEEeCCEEEEEEEcC--CeEEEEEcC------C-CEEEcCEEEEeec--cCcCC
Confidence 44443 3478899999999998654 445565544 4 5799999999999 66654
No 272
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.33 E-value=3.6e-06 Score=82.66 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=74.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++...
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHH
Confidence 46899999999999999999999999999998763210 012345566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.+++.+++++.+++|++++. .. +++.+ + ..+.+|.|++|+| ..|+.
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~~----~~--v~~~~------g-~~~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAING----NE--VTFKS------G-KVEHYDMIIEGVG--THPNS 243 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEeC----CE--EEECC------C-CEEEeCEEEECcC--CCcCh
Confidence 77777888999999999998853 22 55554 4 4789999999999 55554
No 273
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.33 E-value=3.9e-06 Score=76.85 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=107.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
-+++++|||||.-|+..+....++|-+||++|-.+.+|+. -..++..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk 256 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISK 256 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHH
Confidence 3678999999999999999999999999999988876642 3456777
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCCCCCC------C
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIEGLAD------F 173 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~g~~~------~ 173 (423)
.+++...+.++.+.++++|.++....+ +...|++.+..+ +..+++++|.+++|+| -+|....+ |++. .
T Consensus 257 ~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~i~ve~ak~--~k~~tle~DvlLVsiG--RrP~t~GL-gle~iGi~~D~ 330 (506)
T KOG1335|consen 257 AFQRVLQKQGIKFKLGTKVTSATRNGD-GPVEIEVENAKT--GKKETLECDVLLVSIG--RRPFTEGL-GLEKIGIELDK 330 (506)
T ss_pred HHHHHHHhcCceeEeccEEEEeeccCC-CceEEEEEecCC--CceeEEEeeEEEEEcc--CcccccCC-Chhhccccccc
Confidence 888888889999999999999998775 366677766543 3457899999999999 56654322 1111 1
Q ss_pred CceeeecCCCCCCCCCCCCEEEEECCCCCHHHHHHHHhccC
Q 014522 174 GGEVIHACDYKSGEKYKGKKVLVVGCGNSGMELSLDLSNHN 214 (423)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~g 214 (423)
.+++....+ ....-.++-.||.-..|.-+|...-+.|
T Consensus 331 r~rv~v~~~----f~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 331 RGRVIVNTR----FQTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred ccceecccc----ccccCCceEEecccCCcchhhhhhhhhc
Confidence 222222111 1223457888887666655555444444
No 274
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.32 E-value=2.8e-05 Score=79.03 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=37.4
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLW 60 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~ 60 (423)
+..+||+|||+|.+|+++|..++++|.+|+|+|+....||..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 346799999999999999999999999999999987777643
No 275
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.31 E-value=1.6e-05 Score=86.92 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=36.8
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+...||||||+|.||++||.++++.|.+|+|+||.+..||
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 3578999999999999999999999999999999987776
No 276
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.31 E-value=1e-05 Score=80.35 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=76.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|++.|.+|+++++.. +. + ....++.++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~--~~d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------R--GFDQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999998742 10 0 123456677
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+.+++.+++++.++.++.+...+ +...++..+.. +..++.+|.||+|+| ..|+.
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~----~~~~i~~D~vl~a~G--~~pn~ 281 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDST----NGIEEEYDTVLLAIG--RDACT 281 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCC----cceEEEeCEEEEEec--CCcCC
Confidence 7777888899999999988887654 34445554311 124799999999999 55554
No 277
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.30 E-value=1.1e-05 Score=76.63 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCC
Q 014522 96 QFIQYLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 162 (423)
.+...+-..+.+. ++.++++++|+++....+ +.|.|.+.+..+ +....+++++|++..|.++-+
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~~~--~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWEVKVKDLKT--GEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEEEEEEecCC--CCeEEEECCEEEECCchHhHH
Confidence 3334343434444 889999999999998753 779999865432 244789999999999975533
No 278
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.30 E-value=9.7e-06 Score=80.83 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=75.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|++.|.+|+++++...+ + ....++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~--~~d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--------------------------------R--GFDRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--------------------------------c--cCCHHHHHH
Confidence 458999999999999999999999999999864211 0 122345566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++.+++++.++.+..+...+ +...+.+.+ + ..+.+|.|++|+| ..|+..
T Consensus 228 l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~------g-~~i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 228 VVEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSD------G-TTELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECC------C-CEEEcCEEEEeeC--CCCCcc
Confidence 7777788899999999998887654 334455544 4 4689999999999 566543
No 279
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.29 E-value=1.9e-06 Score=80.03 Aligned_cols=36 Identities=44% Similarity=0.528 Sum_probs=33.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI 56 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~ 56 (423)
+.+|+|||||.+|+++|..|.++|++++|+|+.+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999997655
No 280
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.27 E-value=5.6e-06 Score=86.89 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=76.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+.. . .........
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~-~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------K-QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------h-hcCHHHHHH
Confidence 46899999999999999999999999999998653210 0 012344566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+..++.+++++.++.++.+..+. ....|.+.+ + ..+.+|.||+|+| .+|+.
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~d------G-~~i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKD------G-SSLEADLIVMAAG--IRPND 240 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECC------C-CEEEcCEEEECCC--CCcCc
Confidence 6777778899999999998886543 333466655 4 5899999999999 66654
No 281
>PTZ00058 glutathione reductase; Provisional
Probab=98.27 E-value=1.3e-05 Score=80.54 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=76.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~--~~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------R--KFDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------c--cCCHHHHHH
Confidence 5789999999999999999999999999999875321 1 123455566
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+..++.+++++.++.|.+++..+. +...+...+ +..++.+|.|++|+| ..|+.
T Consensus 284 l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~------~~~~i~aD~VlvA~G--r~Pn~ 338 (561)
T PTZ00058 284 LENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSD------GRKYEHFDYVIYCVG--RSPNT 338 (561)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECC------CCEEEECCEEEECcC--CCCCc
Confidence 77777788999999999999986532 233344333 326799999999999 55554
No 282
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.26 E-value=3.2e-05 Score=78.16 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=35.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
...||+|||+|++|+++|..++++|.+|+|||+.+..||
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 467999999999999999999999999999999877665
No 283
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.23 E-value=3.1e-05 Score=76.79 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=75.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ---GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQF 97 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (423)
..+++|||||+.|+.+|..+... |.+|+|+++.+.+. + ....++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~--~~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------R--GFDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------c--ccCHHH
Confidence 56899999999999999876654 89999999876421 1 123556
Q ss_pred HHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 98 IQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
.+.+.+.+++.+++++.++.|+.+...++ +...+.+.+ + ..+.+|.||+|+| ..|+.
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~~~~------g-~~i~~D~vl~a~G--~~Pn~ 290 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNAD-GSKHVTFES------G-KTLDVDVVMMAIG--RVPRT 290 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEEEcC------C-CEEEcCEEEEeeC--CCcCc
Confidence 67777778888999999999999976532 333455543 4 4799999999999 56654
No 284
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.23 E-value=2.8e-05 Score=78.29 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=34.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+...||||||+|.||++||..+++. .+|+|+||....+|
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 4567999999999999999999986 89999999876554
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.23 E-value=1.9e-05 Score=76.97 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=79.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+++|||+|+.|+.+|..|+++|.+++++|+.+.+++.. .. ..+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~-------------------------------~~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL-------------------------------LD-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-------------------------------hh-HHHHHH
Confidence 4799999999999999999999999999999988665321 00 567778
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEE-EEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWR-VKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
+.+..++++++++.+..+..++......... +...+ + ..+.+|.+++++| ..|+
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~------~-~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID------G-EEIKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC------C-cEEEeeEEEEeec--cccc
Confidence 8888888999999999999998765321211 23332 3 6899999999999 5653
No 286
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.23 E-value=2.5e-05 Score=80.27 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=34.0
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA 57 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g 57 (423)
...||||||||.||++||..+++.|.+|+|+|+.+..+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 45799999999999999999999999999999876543
No 287
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.22 E-value=1.4e-06 Score=85.61 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=38.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL 59 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 59 (423)
...++|+|||||+|||+||++|.+.|++|+|+|..+.+||.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 35779999999999999999999999999999999999984
No 288
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.21 E-value=3.3e-05 Score=78.29 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=30.4
Q ss_pred CeEEECCChHHHHHHHHHH----HcCCCEEEEecCCC
Q 014522 23 GPVIVGAGPSGLATAACLR----DQGVPFVMLERAEC 55 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~----~~g~~v~lie~~~~ 55 (423)
||||||||.||++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999754
No 289
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.21 E-value=2.4e-05 Score=79.16 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=35.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--CCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE--CIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~--~~gg 58 (423)
...||||||+|.+|++||..+++.|.+|+|+|+.+ ..||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 46799999999999999999999999999999988 5555
No 290
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.20 E-value=1.5e-05 Score=78.31 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeE-EEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 94 KRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLW-RVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
...+.+.+.+.+++.+++++++++|+++..+.+.+.. .+...+ +...+.++.||+|||.+.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~------~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV------GTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC------CcEEEEcCEEEEcCCCcc
Confidence 4567788888889999999999999998765212322 123322 226899999999999543
No 291
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.18 E-value=2.9e-05 Score=75.92 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=70.7
Q ss_pred CCeEEECCChHHHHHHHHHHH--------------cCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRD--------------QGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPED 87 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~--------------~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (423)
.+++|||||+.|+.+|..|.. .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 479999999999999999986 368999999875321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 88 FPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
+. ....+.+++.+..++.+++++.+++|+.+..+ . |.+.+ + +++.+|.+|+|+|.
T Consensus 224 -~~--~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~--v~~~~------g-~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 224 -GS--FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----E--VVLKD------G-EVIPTGLVVWSTGV 278 (424)
T ss_pred -cc--CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----E--EEECC------C-CEEEccEEEEccCC
Confidence 11 22356677788888899999999999988632 2 66655 4 58999999999994
No 292
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.17 E-value=2.2e-05 Score=78.55 Aligned_cols=62 Identities=19% Similarity=0.099 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHc-CCceeccceEEEEEEeCCCCeE-EEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 93 TKRQFIQYLESYAEKF-EINPRFNECVQSARYDETSGLW-RVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
+...+.+.+.+.+.+. +++++.++.|+.+..++ +.+ -+...+ . ++...+.++.||+|||.++
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~-~---~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAAT-A---GGPVVLPARAVVLATGGIG 197 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEe-C---CeEEEEECCEEEEcCCCCc
Confidence 4556777777777664 89999999999876543 432 233322 1 1324689999999999654
No 293
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.13 E-value=2.5e-05 Score=70.03 Aligned_cols=38 Identities=26% Similarity=0.518 Sum_probs=34.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+..|+|||+|.||++++..+...|-.|+++|+....||
T Consensus 9 lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 9 LSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred CCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 33699999999999999999999877999999988887
No 294
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.13 E-value=2.7e-05 Score=73.64 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=37.8
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL 59 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 59 (423)
++..||+|||+|.+||++|++|.+.|++|+|+|..+.+||.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 35679999999999999999999999999999999988873
No 295
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.12 E-value=2.9e-06 Score=83.81 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=39.9
Q ss_pred CCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCcccccccCCc
Q 014522 22 NGPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIASLWQKRTYDR 67 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~ 67 (423)
++|+|||||++||+||+.|++.| ++|+|+|+.+.+||..+.....+
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g 48 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG 48 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC
Confidence 37999999999999999999987 89999999999999766544333
No 296
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11 E-value=4.8e-05 Score=77.66 Aligned_cols=110 Identities=19% Similarity=0.168 Sum_probs=75.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++..+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~--~~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------P--LLDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------c--cCCHHHHHH
Confidence 4689999999999999999999999999999876431 0 023345556
Q ss_pred HHHHH-HHcCCceeccceEEEEEEeCCCCeEEEEEcccC-CCCC-------ceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYA-EKFEINPRFNECVQSARYDETSGLWRVKTASSA-GSTK-------TEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~-~~~~-------~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.. ++.+++++.++.|+.+...+......+.+.+.. +..+ ..+++.+|.|++|+| ..|+..
T Consensus 359 l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~ 430 (659)
T PTZ00153 359 FERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTN 430 (659)
T ss_pred HHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCCc
Confidence 55543 567999999999999986542222334432110 0000 113799999999999 666654
No 297
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.11 E-value=1.8e-05 Score=73.50 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=30.1
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+++|||+|+.|+++|..|++.|.+|+++.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 68999999999999999999999999999875
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=98.09 E-value=5.6e-06 Score=82.90 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=40.0
Q ss_pred cccCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCCccccc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQ-GVPFVMLERAECIASLWQK 62 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~-g~~v~lie~~~~~gg~~~~ 62 (423)
+.++||+|||||++||++|+.|.+. |.+|+|+|+.+.+||....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 4567999999999999999999999 9999999999999996554
No 299
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=8.9e-06 Score=72.97 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=54.7
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
++|++|||||.+|+.+|..|+++|.+|.|+|+.+.+||.+....-+.-.+..- .++. .-.+.+.+.+.+|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvH--kYGp--------HIFHT~~~~Vwdy 70 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVH--KYGP--------HIFHTDNKRVWDY 70 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEe--eccC--------ceeecCchHHHHH
Confidence 57999999999999999999999999999999999999775533221111110 0000 0122367788898
Q ss_pred HHHHHHHc
Q 014522 101 LESYAEKF 108 (423)
Q Consensus 101 ~~~~~~~~ 108 (423)
+..+.+-.
T Consensus 71 v~~F~e~~ 78 (374)
T COG0562 71 VNQFTEFN 78 (374)
T ss_pred Hhhhhhhh
Confidence 88876543
No 300
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.08 E-value=5.2e-06 Score=82.97 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=42.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeec
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLH 71 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~ 71 (423)
.||+|||||++|++||..|++.|++|+|+|+++.+||.......++...+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD 51 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFD 51 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEe
Confidence 58999999999999999999999999999999999997655444444443
No 301
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.08 E-value=4.2e-06 Score=79.53 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=38.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK 62 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 62 (423)
++||+|||||++|+++|..|++.|.+|+|+|+.+.+||.+..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 469999999999999999999999999999999999985443
No 302
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.07 E-value=1.2e-05 Score=77.22 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=32.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA 57 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g 57 (423)
+|+|||||++|+.+|..|+++|++|+|+|+.+..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 79999999999999999999999999999876543
No 303
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.06 E-value=5.4e-06 Score=82.22 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=39.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCcccccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ----GVPFVMLERAECIASLWQKR 63 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~~~~ 63 (423)
++||+|||||++||++|..|.++ |++|+|+|+.+.+||..+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~ 48 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTV 48 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEE
Confidence 46899999999999999999999 99999999999999976553
No 304
>PRK07233 hypothetical protein; Provisional
Probab=98.06 E-value=4.7e-06 Score=81.89 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=37.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK 62 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 62 (423)
+|+|||||++||+||..|++.|++|+|+|+.+.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6899999999999999999999999999999999996543
No 305
>PLN02546 glutathione reductase
Probab=98.04 E-value=7.1e-05 Score=75.30 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=74.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~--~~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------R--GFDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------c--ccCHHHHHH
Confidence 5689999999999999999999999999999875321 0 123455667
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+..++.+++++.++.+.++....+ +...+.+.+ + ....+|.||+|+| ..|+.
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v~v~~~~------g-~~~~~D~Viva~G--~~Pnt 352 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSAD-GSLSLKTNK------G-TVEGFSHVMFATG--RKPNT 352 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCC-CEEEEEECC------e-EEEecCEEEEeec--cccCC
Confidence 77777888999999999999876432 333343332 3 3445899999999 56554
No 306
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.3e-05 Score=73.83 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=32.5
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERA 53 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~ 53 (423)
...|||||||||.||+.+|...+|.|.+.+++..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 56899999999999999999999999999999875
No 307
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.03 E-value=6.8e-06 Score=82.09 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=37.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK 62 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 62 (423)
+||+|||||.+|+++|..|+++|++|+|+|++..+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 58999999999999999999999999999999999885444
No 308
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.03 E-value=1e-05 Score=77.84 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=42.9
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCcccccccCCceeec
Q 014522 23 GPVIVGAGPSGLATAACLRDQG--VPFVMLERAECIASLWQKRTYDRLNLH 71 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~ 71 (423)
+|+|||||++||++|+.|++++ .+++|+|+++..||.......++..++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e 52 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFE 52 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEe
Confidence 6999999999999999999998 899999999999998777655555544
No 309
>PLN02268 probable polyamine oxidase
Probab=98.02 E-value=6.7e-06 Score=80.84 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=36.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQ 61 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 61 (423)
.+|+|||||.+||+||+.|.+.|++|+|+|+.+.+||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 4799999999999999999999999999999999998543
No 310
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.02 E-value=2.4e-05 Score=72.88 Aligned_cols=137 Identities=22% Similarity=0.296 Sum_probs=92.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHc--------------CCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ--------------GVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPE 86 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (423)
.-+++||||||.|+.+|.+|+.- .++|+++|..+.+=.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~---------------------------- 269 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN---------------------------- 269 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH----------------------------
Confidence 45799999999999999999851 368999998763210
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCC
Q 014522 87 DFPEYPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPD 166 (423)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~ 166 (423)
...+.+.+|.++...+.++++..++.|..++.++ +++...++ ...++.|-.+|-|||...+|..-.
T Consensus 270 -----mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~~~g---~~~~iPYG~lVWatG~~~rp~~k~ 335 (491)
T KOG2495|consen 270 -----MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKTKDG---EIEEIPYGLLVWATGNGPRPVIKD 335 (491)
T ss_pred -----HHHHHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEcCCC---ceeeecceEEEecCCCCCchhhhh
Confidence 2467788899999999999999999999887654 55555433 457899999999999666665433
Q ss_pred C-CCCCCCCceeeecCCCCCCCCCCCCEEEEECCCC
Q 014522 167 I-EGLADFGGEVIHACDYKSGEKYKGKKVLVVGCGN 201 (423)
Q Consensus 167 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~ 201 (423)
+ ..+++...+.+...++..-. .-++|--||...
T Consensus 336 lm~~i~e~~rr~L~vDE~LrV~--G~~nvfAiGDca 369 (491)
T KOG2495|consen 336 LMKQIDEQGRRGLAVDEWLRVK--GVKNVFAIGDCA 369 (491)
T ss_pred HhhcCCccCceeeeeeceeecc--CcCceEEecccc
Confidence 2 12222222233444443321 234566666543
No 311
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.99 E-value=8.2e-06 Score=81.78 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=36.0
Q ss_pred eEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 014522 24 PVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK 62 (423)
Q Consensus 24 vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 62 (423)
|+|||||.+||+||..|++.|++|+|+|+++.+||....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence 699999999999999999999999999999999985444
No 312
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.99 E-value=5e-05 Score=72.02 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=82.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
...|+++|+|..|+.+|..|...+.+|++|++.+.+- +. .....+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------------------------------~~-lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------------------------------PR-LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-------------------------------hh-hhhHHHHHH
Confidence 4569999999999999999999999999999976321 00 134455666
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCCCCC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMPDIE 168 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p~~~ 168 (423)
+..+.++.+++++.++.+.+++.......-.|.+.+ + .++.+|.||+.+| .+|+.+.+.
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d------g-~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD------G-KTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc------C-CEeccCeEEEeec--ccccccccc
Confidence 677777789999999999998876654444466655 5 7999999999999 777766444
No 313
>PLN02676 polyamine oxidase
Probab=97.98 E-value=1.3e-05 Score=79.57 Aligned_cols=49 Identities=29% Similarity=0.456 Sum_probs=42.0
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDR 67 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~ 67 (423)
+..+||+|||||++|+++|..|.++|. +|+|+|+.+.+||.+....+++
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g 73 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG 73 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC
Confidence 347799999999999999999999998 6999999999999776544433
No 314
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.97 E-value=8.3e-05 Score=74.42 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.9
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA 57 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g 57 (423)
...+||||||||.||+.||..+++.|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 357899999999999999999999999999999975443
No 315
>PRK10262 thioredoxin reductase; Provisional
Probab=97.96 E-value=7.6e-05 Score=70.23 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=72.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+...
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 4689999999999999999999999999999865220 11223455
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.+..++.+++++.++.++++..+.. +.-.|++.+..+ .+...++.+|.||+|+| ..|+.
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~-~~~~v~~~~~~~-~~~~~~i~~D~vv~a~G--~~p~~ 250 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQM-GVTGVRLRDTQN-SDNIESLDVAGLFVAIG--HSPNT 250 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCc-cEEEEEEEEcCC-CCeEEEEECCEEEEEeC--CccCh
Confidence 55556677899999999999875431 221244432110 01235799999999999 55544
No 316
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=9.4e-06 Score=78.04 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=36.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL 59 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 59 (423)
++|+|+|||.|||+||+.|+++|++|+|+|..+.+||.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 47999999999999999999999999999999999984
No 317
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.94 E-value=1e-05 Score=80.30 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=37.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHc------CCCEEEEecCCCCCcccccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ------GVPFVMLERAECIASLWQKR 63 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~------g~~v~lie~~~~~gg~~~~~ 63 (423)
|++|+|||||++||+||+.|.+. |.+|+|+|+++.+||.....
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~ 49 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV 49 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEE
Confidence 45799999999999999999986 37999999999999975553
No 318
>PLN02568 polyamine oxidase
Probab=97.90 E-value=1.6e-05 Score=79.57 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=39.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcC-----CCEEEEecCCCCCcccccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQG-----VPFVMLERAECIASLWQKR 63 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g-----~~v~lie~~~~~gg~~~~~ 63 (423)
+.+||+|||||++|++||..|++.| ++|+|+|+...+||.+...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 3578999999999999999999987 8999999999999976554
No 319
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.89 E-value=3.4e-05 Score=72.97 Aligned_cols=140 Identities=18% Similarity=0.150 Sum_probs=70.9
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecCceeeccccc---CCChHHHHHHHHhhccHHHHHHHHHHHHHHHhcccc
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREIL---GKSTFELATLMMKWLPLWLVDKILLILAWFILGNTE 269 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
+|+|||+|..|+|+|..+++.|.+|.++..+...+....+. +.........-++.+...+.. ..+...-...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~-----~aD~~~i~~~ 75 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGR-----AADETGIHFR 75 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHH-----HHHHHEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHH-----HHhHhhhhhh
Confidence 58999999999999999999999999995444344322211 111111111112222211111 1111100000
Q ss_pred ccCCCCCCCCcccccccCCCccccChhhhhhhhc-CCeEEecC-ceEEeC-----CeEEEccCcEecccEEEEcCCC
Q 014522 270 SYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRS-GHINVVPG-IKRISC-----GQAELINGEKLDIDAIVLATGY 339 (423)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~-i~~~~~-----~~v~~~~g~~~~~D~vi~a~G~ 339 (423)
.. +..+.++.+......-+..+...+.+.+++ .+|+++.+ ++.+.. .+|.+.+|+++.+|.||+|||.
T Consensus 76 ~l--N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 76 ML--NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EE--STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cc--cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00 000111111000000122344555566665 79999876 666643 2488899999999999999998
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.89 E-value=0.00014 Score=72.99 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=69.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|++.+.+|+++++.+.+. .. ..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~~----~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------AD----KV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------hh----HH
Confidence 4689999999999999999999999999999764220 11 12
Q ss_pred HHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcCC
Q 014522 101 LESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVMP 165 (423)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~p 165 (423)
+.+.+++ .+++++.++.++.+..++. ....|.+.+..+ ++.+.+.+|.|++|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~~-~v~~v~~~~~~~--~~~~~i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDGD-KVTGIRYQDRNS--GEEKQLDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCCC-EEEEEEEEECCC--CcEEEEEcCEEEEEeC--CcCCch
Confidence 3333443 5899999999998875431 222244433211 1336799999999999 666543
No 321
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.88 E-value=5.2e-05 Score=74.37 Aligned_cols=60 Identities=18% Similarity=-0.000 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 92 PTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
.....+...+...|+++|..+..++.|+++....+ +.+-|.|.. | .+++.++|-|+|-|+
T Consensus 184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~------G--~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPH------G--SIETECVVNAAGVWA 243 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccC------c--ceecceEEechhHHH
Confidence 45677778888899999999999999999987653 444577766 4 799999999999875
No 322
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.85 E-value=1.9e-05 Score=78.07 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=36.4
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQ 61 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 61 (423)
+|+|||||++|+++|..|.++|++|+|+|+.+.+||...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence 589999999999999999999999999999999999653
No 323
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.84 E-value=2e-05 Score=75.26 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=33.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECI 56 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~ 56 (423)
|+.||+|||||++|+++|..|+++|++|+|+|+.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 3569999999999999999999999999999976544
No 324
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.84 E-value=0.00016 Score=68.33 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 94 KRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
...+..-+.+..+++|++++++++|+++...+. ....|.+.+ | ..+.+|+||+|.|..+
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-~~~~v~~~~------g-~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-EVLGVKLTK------G-EEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-ceEEEEccC------C-cEEecCEEEEccCcch
Confidence 345666778888888999999999999998763 234466655 4 7999999999999744
No 325
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.83 E-value=0.00013 Score=70.06 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=67.6
Q ss_pred cCCeEEECCChHHHHHHHHHHH----cC--CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCH
Q 014522 21 VNGPVIVGAGPSGLATAACLRD----QG--VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTK 94 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~----~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (423)
..+|+|||+|+.|+.+|..|.+ .| .+|+|+.. +.+. + ...
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l-------------------------------~--~~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLL-------------------------------P--GFP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccc-------------------------------c--cCC
Confidence 4589999999999999999985 34 48988833 2110 0 112
Q ss_pred HHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 95 RQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
..+...+.+.+++.+++++.+++|..++. +. +.+.+ + .++.+|.||+|+| ..|.
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~--v~~~~------g-~~i~~D~vi~a~G--~~p~ 244 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGPD----GA--LILAD------G-RTLPADAILWATG--ARAP 244 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEcC----Ce--EEeCC------C-CEEecCEEEEccC--CChh
Confidence 33456667777888999999999988752 22 66654 4 5899999999999 4443
No 326
>PLN02529 lysine-specific histone demethylase 1
Probab=97.80 E-value=3e-05 Score=79.63 Aligned_cols=42 Identities=33% Similarity=0.310 Sum_probs=38.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQ 61 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 61 (423)
..++|+|||||++|++||..|+++|++|+|+|+.+.+||...
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 467999999999999999999999999999999988888543
No 327
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.77 E-value=0.00076 Score=66.49 Aligned_cols=104 Identities=19% Similarity=0.138 Sum_probs=67.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.++|+|||||..|+.+|..|.+.|.+|+++++.+.. .++.....
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~---------------------------------~~~~~~~~--- 315 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE---------------------------------DMTARVEE--- 315 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc---------------------------------cCCCCHHH---
Confidence 468999999999999999999999999999986421 00111111
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeE-EEEEcc-------cCCC------CCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLW-RVKTAS-------SAGS------TKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~v~~~~-------~~~~------~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
.+.+.+.|+++++++.++.+..+++ +.. .|++.. .++. .+....+.+|.||+|+| ..|..
T Consensus 316 -~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG--~~p~~ 389 (449)
T TIGR01316 316 -IAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG--NGSNP 389 (449)
T ss_pred -HHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC--CCCCc
Confidence 2334566999998988888764322 221 122220 0000 01235799999999999 55543
No 328
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.77 E-value=0.00016 Score=63.96 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=34.9
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcC------CCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQG------VPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g------~~v~lie~~~~~gg 58 (423)
...++|+|||||..|+++|+.|.+++ ..|+|||.....||
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 45689999999999999999999997 79999998865554
No 329
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.77 E-value=2.5e-05 Score=76.03 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=41.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR 63 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~ 63 (423)
..+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 46899999999999999999999999999999999999988764
No 330
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.75 E-value=4.3e-05 Score=73.18 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=36.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLW 60 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~ 60 (423)
..+||+|||||..|.-||.-.+-+|+++.++|+.+...|+-
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 35999999999999999999999999999999987555543
No 331
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.72 E-value=4.9e-05 Score=68.71 Aligned_cols=190 Identities=17% Similarity=0.176 Sum_probs=99.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHH-HHHHHHHHHHHhccc
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV-DKILLILAWFILGNT 268 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 268 (423)
..-+|+|||+|++|+-+|..|++.|.+|.++.+.+. +......+.. .++.... .....++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~-~Ggg~~~gg~----------~~~~~~v~~~~~~~l-------- 84 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS-FGGGMWGGGM----------LFNKIVVQEEADEIL-------- 84 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCCccccCcc----------ccccccchHHHHHHH--------
Confidence 446899999999999999999999999999999872 2110000000 0010000 0001111
Q ss_pred cccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CC----eEEEc-----------cCcEec
Q 014522 269 ESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CG----QAELI-----------NGEKLD 329 (423)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~----~v~~~-----------~g~~~~ 329 (423)
.+.++......... ...-...+...+.+...+.+++++.+ +..+. ++ ++... +..++.
T Consensus 85 ~~~gv~~~~~~~g~---~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~ 161 (257)
T PRK04176 85 DEFGIRYKEVEDGL---YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIE 161 (257)
T ss_pred HHCCCCceeecCcc---eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEE
Confidence 11122111110000 00112344555666667778888765 43332 22 12211 224789
Q ss_pred ccEEEEcCCCCCCCCCcccc----c--------ccccCCC-CCCCCCCCCCCCCCceEEEeeccccCC---------C-c
Q 014522 330 IDAIVLATGYRSNVPSWLQE----S--------EFFSENG-FPKAPFPHGWKGNAGLYAVGFTRRGLS---------G-A 386 (423)
Q Consensus 330 ~D~vi~a~G~~~~~~~ll~~----~--------~~~~~~g-~~~~~~~~~~~~~~~vya~Gd~~~~~~---------~-a 386 (423)
++.||.|||........+.. . +...+.| ..+++ +...-.||+|++|-++.... . -
T Consensus 162 Ak~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~--~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m 239 (257)
T PRK04176 162 AKAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVE--NTGEVYPGLYVAGMAANAVHGLPRMGPIFGGM 239 (257)
T ss_pred cCEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHh--cCCeEcCCEEEeehhhhhhcCCCccCchhHhH
Confidence 99999999976654222111 1 1111112 11122 23334799999998763211 2 3
Q ss_pred chhHHHHHHHHhhhhHH
Q 014522 387 SSDAMRIAQDIGKVWKE 403 (423)
Q Consensus 387 ~~~g~~~a~~i~~~l~~ 403 (423)
...|+.+|+.|...|..
T Consensus 240 ~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 240 LLSGKKVAELILEKLKK 256 (257)
T ss_pred HHhHHHHHHHHHHHhhc
Confidence 35788889888887754
No 332
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.72 E-value=7.6e-05 Score=79.46 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=33.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+++|+|||+|++|+.+|..|++.|++|+++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 357999999999999999999999999999999876
No 333
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.71 E-value=0.00049 Score=62.31 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=34.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--CCCc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE--CIAS 58 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~--~~gg 58 (423)
...||+|||+|.+|+-+|.+|+..|.+|+|+|... .+||
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 36799999999999999999999999999999864 4555
No 334
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.71 E-value=0.00021 Score=68.15 Aligned_cols=101 Identities=17% Similarity=0.031 Sum_probs=65.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVP-FVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.+++|||+|+.|+.+|..|.+.|.+ |+|+++.+... . +.. ..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-----------------------------~----~~~----~~ 215 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-----------------------------A----PAG----KY 215 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-----------------------------C----CCC----HH
Confidence 5799999999999999999999986 99998754110 0 011 11
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccC-------------CCCCceEEEEeCEEEEccCCCCCCc
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSA-------------GSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~-------------~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
..+.++..+++++.++.+.++...+ ..-.+++.+.. ...+....+.+|.||+|+| ..|.
T Consensus 216 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G--~~p~ 287 (352)
T PRK12770 216 EIERLIARGVEFLELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG--EIPT 287 (352)
T ss_pred HHHHHHHcCCEEeeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc--cCCC
Confidence 2233556799999998888876432 21112221100 0001236799999999999 5554
No 335
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.71 E-value=2.8e-05 Score=74.89 Aligned_cols=139 Identities=17% Similarity=0.293 Sum_probs=68.2
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecCceeeccccc-CCChHH-------HH----------HHHHhhccHHHHH
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREIL-GKSTFE-------LA----------TLMMKWLPLWLVD 254 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~-~~~~~~-------~~----------~~~~~~~~~~~~~ 254 (423)
+|+|||+|++|+=+|..+++.|.+|.++.|++ .+...... +..+-. .. ..+...+.....+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~-~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK-RVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc-ccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 58999999999999999999999999999997 33211000 000000 00 0000111111111
Q ss_pred HHHHHHHHHHhccccccCCCCC--CCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CCe---EEEccC
Q 014522 255 KILLILAWFILGNTESYGLKRP--SMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CGQ---AELING 325 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~---v~~~~g 325 (423)
.+..++. +.|+... ..+..+. ...+...+-+.+.+.+++.+++++.+ |..+. +++ |.++++
T Consensus 81 d~~~ff~--------~~Gv~~~~~~~gr~fP--~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~ 150 (409)
T PF03486_consen 81 DLIAFFE--------ELGVPTKIEEDGRVFP--KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG 150 (409)
T ss_dssp HHHHHHH--------HTT--EEE-STTEEEE--TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT
T ss_pred HHHHHHH--------hcCCeEEEcCCCEECC--CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc
Confidence 2222222 2222111 0111111 12245556677788888899999977 76664 344 555577
Q ss_pred cEecccEEEEcCCCCCC
Q 014522 326 EKLDIDAIVLATGYRSN 342 (423)
Q Consensus 326 ~~~~~D~vi~a~G~~~~ 342 (423)
.++.+|.||+|+|-.+.
T Consensus 151 ~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 151 GEYEADAVILATGGKSY 167 (409)
T ss_dssp EEEEESEEEE----SSS
T ss_pred ccccCCEEEEecCCCCc
Confidence 89999999999997664
No 336
>PRK06847 hypothetical protein; Provisional
Probab=97.68 E-value=0.00014 Score=69.97 Aligned_cols=146 Identities=22% Similarity=0.207 Sum_probs=76.9
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHH-HHHHHHHHHHHHHhcccc
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW-LVDKILLILAWFILGNTE 269 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.+++. +.+ . + ....+.....+.+... +.+.+..... ......
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~--~-g-~g~~l~~~~~~~l~~~gl~~~~~~~~~--~~~~~~ 76 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE-WRV--Y-G-AGITLQGNALRALRELGVLDECLEAGF--GFDGVD 76 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC-Ccc--C-C-ceeeecHHHHHHHHHcCCHHHHHHhCC--CccceE
Confidence 46899999999999999999999999999999873 211 1 1 1111111111111100 0111111000 000000
Q ss_pred ---ccC-----CCCCCCCccccc-ccCCCccccChhhhhhhhcCCeEEecC--ceEEeCC--e--EEEccCcEecccEEE
Q 014522 270 ---SYG-----LKRPSMGPLALK-NTMGKTPVLDIGALKKIRSGHINVVPG--IKRISCG--Q--AELINGEKLDIDAIV 334 (423)
Q Consensus 270 ---~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~--v~~~~g~~~~~D~vi 334 (423)
..+ +..+........ ...-.++.+...+.+.+.+.+++++.+ +.++..+ + +.+.+|+++.+|.||
T Consensus 77 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI 156 (375)
T PRK06847 77 LFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVV 156 (375)
T ss_pred EECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEE
Confidence 000 000000000000 011113345556666666678888876 6666532 2 566789999999999
Q ss_pred EcCCCCCCC
Q 014522 335 LATGYRSNV 343 (423)
Q Consensus 335 ~a~G~~~~~ 343 (423)
.|+|..+..
T Consensus 157 ~AdG~~s~~ 165 (375)
T PRK06847 157 GADGLYSKV 165 (375)
T ss_pred ECcCCCcch
Confidence 999987654
No 337
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.68 E-value=6.7e-05 Score=67.66 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=98.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHH-HHHHHHHHHHhccc
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVD-KILLILAWFILGNT 268 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 268 (423)
..-+++|||+|.+|+-+|..|++.|.+|.++.|++. +......+.. .++....+ ....++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~-~Ggg~~~gg~----------~~~~~~~~~~~~~~l-------- 80 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA-FGGGSWGGGM----------LFSKIVVEKPAHEIL-------- 80 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCccccCCCc----------ceecccccchHHHHH--------
Confidence 345799999999999999999999999999999872 2111000000 01110000 000010
Q ss_pred cccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CC-----eEEEc-----------cCcEe
Q 014522 269 ESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CG-----QAELI-----------NGEKL 328 (423)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~-----~v~~~-----------~g~~~ 328 (423)
.+.++........... .-.+.+...+.+...+.+++++.+ +..+. ++ +++.. +..++
T Consensus 81 ~~~gi~~~~~~~g~~~---~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i 157 (254)
T TIGR00292 81 DEFGIRYEDEGDGYVV---ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQ 157 (254)
T ss_pred HHCCCCeeeccCceEE---eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEE
Confidence 1112221111110000 012334455555666677888765 43332 22 33332 22478
Q ss_pred cccEEEEcCCCCCCCCCccccc-cc-ccC---CC---CCCCCC-----CCCCCCCCceEEEeeccccCC---------C-
Q 014522 329 DIDAIVLATGYRSNVPSWLQES-EF-FSE---NG---FPKAPF-----PHGWKGNAGLYAVGFTRRGLS---------G- 385 (423)
Q Consensus 329 ~~D~vi~a~G~~~~~~~ll~~~-~~-~~~---~g---~~~~~~-----~~~~~~~~~vya~Gd~~~~~~---------~- 385 (423)
+++.||.|||.......++... ++ ... .| ...... .+...-.||+|++|-+..... .
T Consensus 158 ~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~ 237 (254)
T TIGR00292 158 RSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGG 237 (254)
T ss_pred EcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHH
Confidence 9999999999876543442222 21 111 11 111000 123345799999998763211 2
Q ss_pred cchhHHHHHHHHhhhh
Q 014522 386 ASSDAMRIAQDIGKVW 401 (423)
Q Consensus 386 a~~~g~~~a~~i~~~l 401 (423)
-...|+.+|+.|...+
T Consensus 238 m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 238 MLLSGKHVAEQILEKL 253 (254)
T ss_pred HHHhhHHHHHHHHHHh
Confidence 2356888888887765
No 338
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.65 E-value=5.9e-05 Score=71.46 Aligned_cols=42 Identities=33% Similarity=0.471 Sum_probs=36.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCccccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQK 62 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~ 62 (423)
..+|+|||||.||++||.+|.+.|. .++|+|..+.+||.-+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 4589999999999999999998875 99999999999985444
No 339
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.64 E-value=6e-05 Score=74.73 Aligned_cols=39 Identities=36% Similarity=0.381 Sum_probs=36.1
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQ 61 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 61 (423)
+|+|||||++|+++|..|.+.|++|+|+|+.+.+||...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceee
Confidence 589999999999999999999999999999999998543
No 340
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.63 E-value=0.00014 Score=66.08 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=35.5
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK 62 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 62 (423)
...+|+|||+|.+|++||..|.+ -.+|+++|.+...||.-+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccCccce
Confidence 35689999999999999999886 4689999999888885444
No 341
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.62 E-value=0.00052 Score=68.97 Aligned_cols=100 Identities=16% Similarity=0.076 Sum_probs=69.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.++|+|||||..|+.+|..|+..+.+|+++++.+.+. .. .+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~~----~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------AD----QV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------cc----HH
Confidence 4689999999999999999999999999999865320 00 22
Q ss_pred HHHHHHH-cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEK-FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
+.....+ .+++++.++.++++...+. ..-.+.+.+..+ +...++.+|.|++|+| ..|+.
T Consensus 392 l~~~l~~~~gI~i~~~~~v~~i~~~~g-~v~~v~~~~~~~--g~~~~i~~D~v~~~~G--~~p~~ 451 (517)
T PRK15317 392 LQDKLRSLPNVTIITNAQTTEVTGDGD-KVTGLTYKDRTT--GEEHHLELEGVFVQIG--LVPNT 451 (517)
T ss_pred HHHHHhcCCCcEEEECcEEEEEEcCCC-cEEEEEEEECCC--CcEEEEEcCEEEEeEC--CccCc
Confidence 3333333 5899999999999876531 211244433211 1335799999999999 55543
No 342
>PRK06834 hypothetical protein; Provisional
Probab=97.61 E-value=0.00017 Score=71.77 Aligned_cols=147 Identities=16% Similarity=0.096 Sum_probs=75.0
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHH-HHHHHHHHHHHHHhccccc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW-LVDKILLILAWFILGNTES 270 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 270 (423)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+..... ..... .+.....+.+... +.+.+..............
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~--~~Ra~--~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV--GSRAG--GLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC--Cccee--eECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 57999999999999999999999999999998731111 00000 0111111111110 1111111000000000000
Q ss_pred cCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce--EEEccCcEecccEEEEcCCCCCC
Q 014522 271 YGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ--AELINGEKLDIDAIVLATGYRSN 342 (423)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~--v~~~~g~~~~~D~vi~a~G~~~~ 342 (423)
..+.................+.+...+.+.+++.+++++.+ +..+.. ++ +++.+|+++.+|.||.|.|..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 00100000000000001112334555556666778888877 655553 33 45567788999999999997664
No 343
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.60 E-value=0.00018 Score=71.72 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
..+|+|||+|.+|+++|..|.++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999754
No 344
>PRK12831 putative oxidoreductase; Provisional
Probab=97.59 E-value=0.0015 Score=64.71 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||..|+.+|..|.+.|.+|+++.+.... .++. ...++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~------------------------------~m~a--~~~e~-- 325 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE------------------------------ELPA--RVEEV-- 325 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc------------------------------cCCC--CHHHH--
Confidence 3578999999999999999999999999999875420 0010 11121
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeE-EEEEc-------ccCCC------CCceEEEEeCEEEEccCCCCCCcC
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLW-RVKTA-------SSAGS------TKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~v~~~-------~~~~~------~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
..+.+.|+++++++.+..+...++ +.. .|.+. +.++. .++...+.+|.||+|+| ..|..
T Consensus 326 ---~~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG--~~p~~ 398 (464)
T PRK12831 326 ---HHAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG--TSPNP 398 (464)
T ss_pred ---HHHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC--CCCCh
Confidence 123456999888888877754332 221 11111 00000 01334799999999999 55543
No 345
>PLN02487 zeta-carotene desaturase
Probab=97.57 E-value=8.2e-05 Score=74.73 Aligned_cols=42 Identities=31% Similarity=0.281 Sum_probs=38.1
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQ 61 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 61 (423)
.+++|+|||||++|+++|..|.++|++|+|+|+.+..||.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 356999999999999999999999999999999998888543
No 346
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.57 E-value=9.5e-05 Score=76.51 Aligned_cols=43 Identities=30% Similarity=0.301 Sum_probs=38.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQK 62 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 62 (423)
...+|+|||||++|+++|..|.+.|++|+|+|+...+||....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 4678999999999999999999999999999999989885433
No 347
>PLN02463 lycopene beta cyclase
Probab=97.55 E-value=0.00031 Score=68.74 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=73.8
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhcccc-c
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTE-S 270 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 270 (423)
-+|+|||+|++|+-+|..|++.|.+|.++.+++....|+... ... ..+ ..+. +.+.+.. .+...... .
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g----~w~-~~l-~~lg--l~~~l~~---~w~~~~v~~~ 97 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYG----VWV-DEF-EALG--LLDCLDT---TWPGAVVYID 97 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccc----hHH-HHH-HHCC--cHHHHHh---hCCCcEEEEe
Confidence 489999999999999999999999999999876322222110 000 000 0010 0111100 00000000 0
Q ss_pred cCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC-ceEEeCC----eEEEccCcEecccEEEEcCCCCCC
Q 014522 271 YGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG-IKRISCG----QAELINGEKLDIDAIVLATGYRSN 342 (423)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~----~v~~~~g~~~~~D~vi~a~G~~~~ 342 (423)
.+.......+.. .-.+..+...+.+.+.+.+++++.. +.+++.+ .|.+++|.++++|.||.|+|..+.
T Consensus 98 ~~~~~~~~~~y~----~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 98 DGKKKDLDRPYG----RVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CCCCccccCcce----eEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000000000000 0012334555666666678888755 5555532 277789989999999999997764
No 348
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.54 E-value=9.7e-05 Score=66.62 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=32.2
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERA 53 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~ 53 (423)
|.+||+|||||.||++|+..|+++|.++.||...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 5789999999999999999999999999999875
No 349
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.53 E-value=0.00022 Score=75.32 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 457899999999999999999999999999999876
No 350
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.52 E-value=0.00011 Score=73.10 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccc
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLW 60 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~ 60 (423)
+||+|||+||+|+.+|..|++.|++|++||+....|+.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999998888777
No 351
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.49 E-value=0.0001 Score=64.15 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=29.6
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|+.|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 68999999999999999999999999997666
No 352
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.45 E-value=0.00056 Score=64.54 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=67.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCcccccccCCce--eecCCC---ccccCCCCC----CC-C
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGV--PFVMLERAECIASLWQKRTYDRL--NLHLPK---QFCQLPKLQ----FP-E 86 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~--~v~lie~~~~~gg~~~~~~~~~~--~~~~~~---~~~~~~~~~----~~-~ 86 (423)
...++|+|||||-++..++..|.+.+. +|+++-+....-.. ....+ .+..|. .++..+... .. .
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~----d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~ 263 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM----DDSPFVNEIFSPEYVDYFYSLPDEERRELLREQ 263 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHT
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC----ccccchhhhcCchhhhhhhcCCHHHHHHHHHHh
Confidence 357789999999999999999999874 89999987532100 00000 011111 011111000 00 0
Q ss_pred C--CCCCCCHHHHHH-----HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccC
Q 014522 87 D--FPEYPTKRQFIQ-----YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATG 157 (423)
Q Consensus 87 ~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG 157 (423)
. ...-++.+.+.+ |-++...+..+.++.+++|+++....+ +.|.+++.+... ++..++.+|.||+|||
T Consensus 264 ~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~~~--~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 264 RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHRQT--GEEETLEVDAVILATG 338 (341)
T ss_dssp GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT----EEEEEESEEEE---
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEECCC--CCeEEEecCEEEEcCC
Confidence 0 000112332322 222333334567788999999998873 488888876433 2557899999999999
No 353
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.44 E-value=0.0029 Score=66.68 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=65.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVP-FVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.++|+|||||..|+-+|..+.+.|.+ |+++++.+.. .++. ...++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~------------------------------~~~~--~~~e~-- 615 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE------------------------------EMPA--RLEEV-- 615 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHH--
Confidence 46899999999999999999999986 9999976420 0010 11111
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeE-EEEEc-------ccCCC------CCceEEEEeCEEEEccCCCCCCcC
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLW-RVKTA-------SSAGS------TKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~v~~~-------~~~~~------~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
..+.+.|++++.++.+..+..++. +.. .|.+. +.++. .+....+.+|.||+|+| ..|..
T Consensus 616 ---~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G--~~p~~ 688 (752)
T PRK12778 616 ---KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG--VSPNP 688 (752)
T ss_pred ---HHHHHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcC--CCCCc
Confidence 224566999888887777754332 221 12221 00000 01335799999999999 55543
No 354
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.44 E-value=0.00026 Score=68.58 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHH-HHHHHHHHHHHHHhcccc
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLW-LVDKILLILAWFILGNTE 269 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+..-............+.....+.+... +.+.+.... ......+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~-~~~~~~~~ 84 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAAR-AQPYRRMR 84 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhh-CCcccEEE
Confidence 3579999999999999999999999999999986210000000000000111111111000 011111000 00000000
Q ss_pred --------ccCCCCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce--EEEccCcEecccEEEE
Q 014522 270 --------SYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ--AELINGEKLDIDAIVL 335 (423)
Q Consensus 270 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~--v~~~~g~~~~~D~vi~ 335 (423)
...+.......... ........+...+.+.+++.+++++.+ +..+.. ++ +++++|+++.+|.||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQL-GWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EEeCCCCceEEechhccCCCcC-EEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEE
Confidence 00000000000000 000112345555666677778998876 666553 22 5567888999999999
Q ss_pred cCCCCCCC
Q 014522 336 ATGYRSNV 343 (423)
Q Consensus 336 a~G~~~~~ 343 (423)
|.|..+..
T Consensus 164 AdG~~S~v 171 (392)
T PRK08773 164 ADGAASTL 171 (392)
T ss_pred ecCCCchH
Confidence 99987743
No 355
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.41 E-value=0.00025 Score=68.51 Aligned_cols=146 Identities=20% Similarity=0.234 Sum_probs=79.4
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHH-HHHHHHHHHHHhcc-c
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLV-DKILLILAWFILGN-T 268 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 268 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+..+.+.. ....+.....+.+...-. +++........... .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~----r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~ 77 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG----RGIALSPNALRALERLGLWDRLEALGVPPLHVMVV 77 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc----eeeeecHhHHHHHHHcCChhhhhhccCCceeeEEE
Confidence 35799999999999999999999999999999842332222 111222233333222211 22211100000000 0
Q ss_pred cc-----cCCCCCCCCcccccccCCCccccChhhhhhhhc-CCeEEecC--ceEEeCCe----EEEc-cCcEecccEEEE
Q 014522 269 ES-----YGLKRPSMGPLALKNTMGKTPVLDIGALKKIRS-GHINVVPG--IKRISCGQ----AELI-NGEKLDIDAIVL 335 (423)
Q Consensus 269 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--i~~~~~~~----v~~~-~g~~~~~D~vi~ 335 (423)
.. ..+....... ......-....+...+.+.+.+ ++++++.+ ++.+..++ ++++ ||++++||+||-
T Consensus 78 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVg 156 (387)
T COG0654 78 DDGGRRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVG 156 (387)
T ss_pred ecCCceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEE
Confidence 00 0000000000 0000111133455566666654 56999887 77766543 7777 999999999999
Q ss_pred cCCCCC
Q 014522 336 ATGYRS 341 (423)
Q Consensus 336 a~G~~~ 341 (423)
|-|...
T Consensus 157 ADG~~S 162 (387)
T COG0654 157 ADGANS 162 (387)
T ss_pred CCCCch
Confidence 999554
No 356
>PLN02976 amine oxidase
Probab=97.41 E-value=0.00018 Score=77.42 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=40.4
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR 63 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~ 63 (423)
..++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.|...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 46899999999999999999999999999999999999977654
No 357
>PRK07236 hypothetical protein; Provisional
Probab=97.40 E-value=0.00025 Score=68.57 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
...+|+|||+|.+|+.+|..|++.|.+|+++.|.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35789999999999999999999999999999987
No 358
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.40 E-value=0.0016 Score=64.41 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=66.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..+|+|||+|..|+.+|..|.+.|. +|+++++.+.. .++....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~---------------------------------~~~~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE---------------------------------EMPASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc---------------------------------cCCCCHH---
Confidence 5689999999999999999999998 89999975421 0011111
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEccc-------CC-----CCCceEEEEeCEEEEccCCCCCCc
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASS-------AG-----STKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~-------~~-----~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
....+.+.|++++.++.+..+..+.. +.-.|++... .+ ..+...++.+|.||+|+| ..|.
T Consensus 317 -~~~~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 317 -EVEHAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIG--QTPN 388 (457)
T ss_pred -HHHHHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECcc--CCCC
Confidence 12345567999999999988865431 1101222100 00 001336799999999999 5554
No 359
>PLN02612 phytoene desaturase
Probab=97.40 E-value=0.0002 Score=72.53 Aligned_cols=40 Identities=35% Similarity=0.427 Sum_probs=37.0
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASL 59 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 59 (423)
...+|+|||||++|+++|..|.+.|++++++|+.+.+||.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 4678999999999999999999999999999999888874
No 360
>PLN03000 amine oxidase
Probab=97.40 E-value=0.00022 Score=74.09 Aligned_cols=44 Identities=34% Similarity=0.309 Sum_probs=39.8
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKR 63 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~ 63 (423)
...+|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 36799999999999999999999999999999999999866543
No 361
>PRK05868 hypothetical protein; Validated
Probab=97.40 E-value=0.00057 Score=65.66 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=31.9
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
++|+|||+|..|+-+|..|++.|.+|+++.+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999999873
No 362
>PLN02661 Putative thiazole synthesis
Probab=97.38 E-value=0.0018 Score=60.46 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=32.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcc-CCccEEEEecC
Q 014522 187 EKYKGKKVLVVGCGNSGMELSLDLSNH-NASPSMVVRSS 224 (423)
Q Consensus 187 ~~~~~~~v~ViG~G~~~~e~a~~l~~~-g~~V~~v~r~~ 224 (423)
..+..-+|+|||+|.+|+-+|..|++. |.+|+++.++.
T Consensus 88 ~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 444566899999999999999999976 78999999876
No 363
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.38 E-value=0.0021 Score=58.47 Aligned_cols=35 Identities=37% Similarity=0.635 Sum_probs=31.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQ----GVPFVMLERAE 54 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~----g~~v~lie~~~ 54 (423)
.+-||+|||||..|.+.|.-|.++ |++|+++|+++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 367899999999999999998875 68999999985
No 364
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.38 E-value=0.0012 Score=59.37 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=35.2
Q ss_pred cccccCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 014522 17 RCIWVNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIA 57 (423)
Q Consensus 17 ~~~~~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~g 57 (423)
.+...+|+||||||..|++.|++|.-+ +.+|.++|+....+
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 334689999999999999999999877 89999999985444
No 365
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.38 E-value=0.0013 Score=63.36 Aligned_cols=41 Identities=27% Similarity=0.322 Sum_probs=34.7
Q ss_pred cCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCcccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ----GVPFVMLERAECIASLWQ 61 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~~ 61 (423)
.++.=|||+|.|+|++|..|.|. |-+|+|+|+.+..||...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 35678999999999999999997 459999999988777443
No 366
>PRK09126 hypothetical protein; Provisional
Probab=97.37 E-value=0.00066 Score=65.78 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=31.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
-+|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4699999999999999999999999999999873
No 367
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.37 E-value=0.00082 Score=67.40 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=31.0
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|..|+++|..+++.|.+|.++.+++
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 479999999999999999999999999999875
No 368
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.37 E-value=0.00052 Score=63.90 Aligned_cols=102 Identities=23% Similarity=0.142 Sum_probs=73.0
Q ss_pred cccCCeEEECCChHHHHHHHHHHHc----CCCEE-EEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQ----GVPFV-MLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPT 93 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~----g~~v~-lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (423)
.....|.|||+|+-|..+|..|.+. |.+|. +++.+..++ -..
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiL 391 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KIL 391 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhh
Confidence 3467899999999999999999885 44444 555433221 123
Q ss_pred HHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 94 KRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
.+.+.++..+..++-|+.++-+..|.++.... +...+.+.+ | .++..|.||+|+| ..|+.
T Consensus 392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~d------G-~~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSD------G-SELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecC------C-CeeeeeeEEEEec--CCCch
Confidence 34445555566677799999999999987765 444466665 5 7999999999999 66654
No 369
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.35 E-value=0.0069 Score=62.60 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=64.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
..++|+|||+|..|+.+|..+.+.|. +|+++.+.... .++ ....++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~------------------------------~mp--a~~~ei~ 369 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE------------------------------EMP--ANRAEIE 369 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCC--CCHHHHH
Confidence 35789999999999999999999996 69999876410 001 0122232
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEE---Ecc----cCCC------CCceEEEEeCEEEEccCCCCCCc
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWRVK---TAS----SAGS------TKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~---~~~----~~~~------~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
+. .+.|+++++++.+.++...+ +...++ ... ..+. .++...+.+|.||+|+| ..|.
T Consensus 370 ~a-----~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG--~~p~ 438 (652)
T PRK12814 370 EA-----LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG--QQVD 438 (652)
T ss_pred HH-----HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCC--CcCC
Confidence 22 24589998888888776543 221121 111 0000 01335799999999999 4444
No 370
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.34 E-value=0.0013 Score=66.73 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=64.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. ... ..
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-----------------------------------~~~---~~ 184 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-----------------------------------CAK---LI 184 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-----------------------------------cCH---HH
Confidence 4689999999999999999999999999999865210 001 11
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEE--EeCE----EEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEY--ICRW----LVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~--~~d~----vviAtG~~~~~~~ 164 (423)
..++....+++++.++.|+.+..+. ....+.+.+..+ +...++ .+|. ||+|+| ..|+.
T Consensus 185 ~~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~--G~~~~~~~~~D~~~~~Vi~a~G--~~Pn~ 248 (555)
T TIGR03143 185 AEKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVT--GEITEYKAPKDAGTFGVFVFVG--YAPSS 248 (555)
T ss_pred HHHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCC--CCEEEEeccccccceEEEEEeC--CCCCh
Confidence 2223334589999999999887432 221122221111 122333 3666 999999 55554
No 371
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.34 E-value=0.00014 Score=67.47 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=29.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQG-VPFVMLERAEC 55 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~~ 55 (423)
||+||||+|++|..+|.+|++.| .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999763
No 372
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.32 E-value=0.0011 Score=64.60 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=31.0
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999986
No 373
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.00021 Score=60.98 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=34.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 187 EKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 187 ~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.++...+|+|+|+|++|+-+|..|++.|.+|.++.|+-
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 34566789999999999999999999999999999986
No 374
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.29 E-value=0.00067 Score=66.88 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=32.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHhc--cCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSN--HNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~--~g~~V~~v~r~~ 224 (423)
.+++|+|||+|+.|+.+|..|++ .|++|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 46799999999999999999986 689999999998
No 375
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.26 E-value=0.00035 Score=66.94 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=29.5
Q ss_pred EEEEECCCCCHHHHHHHHhcc--CCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNH--NASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~--g~~V~~v~r~~ 224 (423)
+++|||+|..|+.+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 489999999999999999987 89999999987
No 376
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.22 E-value=0.0032 Score=62.50 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=66.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.++|+|||+|..|+.+|..+.+.|. +|++++..+.++..+ .. ...++.++..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~----~~~~~~~~~~----- 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NK----NNPWPYWPMK----- 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------cc----ccCCcccchH-----
Confidence 4689999999999999999999986 788777654321100 00 0011111111
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEE-EEEc---ccCC----CCCceEEEEeCEEEEccCCCCCCc
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWR-VKTA---SSAG----STKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-v~~~---~~~~----~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
.....+.+.|+.+++++.++.+...+ +... |... ..++ ..+....+.+|.||+|+| ..|.
T Consensus 334 ~~~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G--~~p~ 401 (471)
T PRK12810 334 LEVSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG--FTGP 401 (471)
T ss_pred HHHHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC--cCCC
Confidence 12234456699999999888886432 3321 2211 0000 011346899999999999 5543
No 377
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.21 E-value=0.00058 Score=66.28 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=32.4
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999987
No 378
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.21 E-value=0.00045 Score=60.18 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=24.6
Q ss_pred EEECCCCCHHHHHHHHhccCCc-cEEEEecC
Q 014522 195 LVVGCGNSGMELSLDLSNHNAS-PSMVVRSS 224 (423)
Q Consensus 195 ~ViG~G~~~~e~a~~l~~~g~~-V~~v~r~~ 224 (423)
+|||+|++|+-+|..|.+.|.+ |+++.|++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999998 99999986
No 379
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.20 E-value=0.00064 Score=72.24 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 45799999999999999999999999999999876
No 380
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.19 E-value=0.00062 Score=66.70 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=74.3
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHH-HHHHHhccccc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLI-LAWFILGNTES 270 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 270 (423)
-+|+|||+|++|+-+|..|++.|.+|.++.|.+. +......+..-. ...+..++|.......... .......-...
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~-~g~k~~~gg~l~--~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS-AGAKNVTGGRLY--AHSLEHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC-CCCcccccceec--hhhHHHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 4799999999999999999999999999999872 222222111100 0011111111100000000 00000000000
Q ss_pred cC---CCCCCC--CcccccccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CCeE--EEccCcEecccEEEEcCCC
Q 014522 271 YG---LKRPSM--GPLALKNTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CGQA--ELINGEKLDIDAIVLATGY 339 (423)
Q Consensus 271 ~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~v--~~~~g~~~~~D~vi~a~G~ 339 (423)
.+ +..... ...........+..++..+.+.+++.+++++.+ +.++. .+.+ ...+|.++.+|.||.|+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGV 162 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCC
Confidence 00 000000 000000111223445666777777789999876 55543 2333 3356778999999999996
Q ss_pred CC
Q 014522 340 RS 341 (423)
Q Consensus 340 ~~ 341 (423)
..
T Consensus 163 ~s 164 (428)
T PRK10157 163 NS 164 (428)
T ss_pred CH
Confidence 44
No 381
>PRK08244 hypothetical protein; Provisional
Probab=97.18 E-value=0.001 Score=66.55 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
-+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4699999999999999999999999999999873
No 382
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.15 E-value=0.00099 Score=69.83 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+++|+|||+|+.|+.+|..|++.|++|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468899999999999999999999999999999864
No 383
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.14 E-value=0.017 Score=57.22 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=65.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.++++|||+|..|+.+|..+.+.|. +|+++++.+... ++ ....++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~------------------------------~~--~~~~e~-- 327 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN------------------------------MP--GSRREV-- 327 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc------------------------------CC--CCHHHH--
Confidence 4789999999999999999999995 799999864210 00 011222
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeE-EEEEcc-------cCCC------CCceEEEEeCEEEEccCCCCCCc
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLW-RVKTAS-------SAGS------TKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~v~~~~-------~~~~------~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
..+.+.|++++.++.+..+..+++ +.. .|++.. .++. .+....+.+|.||+|+| ..|.
T Consensus 328 ---~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G--~~p~ 399 (467)
T TIGR01318 328 ---ANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFG--FQPH 399 (467)
T ss_pred ---HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCc--CCCC
Confidence 234566999999988888765332 221 122110 0000 01335799999999999 5554
No 384
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.13 E-value=0.0011 Score=64.61 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=74.8
Q ss_pred EEEEECCCCCHHHHHHHHhccC--CccEEEEecCceeecccccCCChH-HHHHHHHhhccHHHHHHHHHHHHHHHhcccc
Q 014522 193 KVLVVGCGNSGMELSLDLSNHN--ASPSMVVRSSVHVLPREILGKSTF-ELATLMMKWLPLWLVDKILLILAWFILGNTE 269 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g--~~V~~v~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
+|+|||+|.+|+-+|..|++.| .+|+++.+.+. ..+........+ .-...+.+.+. +.+.+..... ....+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~-~~~~~~~~~~~l~~~~~~~l~~lG--l~~~~~~~~~--~~~~~~ 77 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA-GAWSRDPRASAIAAAARRMLEALG--VWDEIAPEAQ--PITDMV 77 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc-ccCCCCcceEEecHHHHHHHHHCC--ChhhhhhhcC--cccEEE
Confidence 5899999999999999999985 89999999873 211111000000 11111111111 0111111000 000000
Q ss_pred ccC-CCCCCCCc--ccc------cc---cCCCccccChhhhhhhhcCCeEEecC--ceEEeC--Ce--EEEccCcEeccc
Q 014522 270 SYG-LKRPSMGP--LAL------KN---TMGKTPVLDIGALKKIRSGHINVVPG--IKRISC--GQ--AELINGEKLDID 331 (423)
Q Consensus 270 ~~~-~~~~~~~~--~~~------~~---~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~--v~~~~g~~~~~D 331 (423)
-.. ........ ... .. ..-..+.+...+.+.+.+.+++++.+ +..+.. ++ +.+++|+++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 000 00000000 000 00 01113345666677777778998876 666643 22 566788899999
Q ss_pred EEEEcCCCCCC
Q 014522 332 AIVLATGYRSN 342 (423)
Q Consensus 332 ~vi~a~G~~~~ 342 (423)
.||.|.|..+.
T Consensus 158 ~vI~AdG~~S~ 168 (403)
T PRK07333 158 LLVAADGARSK 168 (403)
T ss_pred EEEEcCCCChH
Confidence 99999997654
No 385
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.12 E-value=0.0028 Score=61.62 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=33.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..++++|||+|++|+-.|..|.+.|.+++++.|++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 36799999999999999999999999999999998
No 386
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.09 E-value=0.0046 Score=66.98 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=67.9
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..+|+|||+|+.|+.+|..|.+.|. .++|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 4689999999999999999999995 68899875421 11
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
.+.+.+++.+++++.++.|+.+..++ ..-.|++....+ +..++.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEVLTGHVVAATEGGK--RVSGVAVARNGG---AGQRLEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEecCC--cEEEEEEEecCC---ceEEEECCEEEEcCC--cCchh
Confidence 23345567799999999998886543 221233331111 336899999999999 66654
No 387
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.09 E-value=0.00084 Score=64.78 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=30.6
Q ss_pred EEEEECCCCCHHHHHHHHhccC-CccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHN-ASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g-~~V~~v~r~~ 224 (423)
+|+|||+|.+|+-+|..|++.| .+|+++.|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4899999999999999999999 9999999987
No 388
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.09 E-value=0.016 Score=60.16 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=65.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.++|+|||||..|+.+|..+.++|. +|+++.+.+... ++ ....+
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~------------------------------~~--~~~~e--- 512 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN------------------------------MP--GSKKE--- 512 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC------------------------------CC--CCHHH---
Confidence 4689999999999999999999996 799988754210 00 01111
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcc-------cCCC------CCceEEEEeCEEEEccCCCCCCc
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTAS-------SAGS------TKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~-------~~~~------~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
.+.+.+.|+++++++.++.+..+++...-.|.+.. .++. +++...+.+|.||+|+| ..|.
T Consensus 513 --~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG--~~p~ 585 (654)
T PRK12769 513 --VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFG--FNPH 585 (654)
T ss_pred --HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECcc--CCCC
Confidence 22355669998888888877543321211122210 0000 11335799999999999 5554
No 389
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.08 E-value=0.0019 Score=63.13 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35799999999999999999999999999999883
No 390
>PRK06184 hypothetical protein; Provisional
Probab=97.07 E-value=0.002 Score=64.57 Aligned_cols=33 Identities=27% Similarity=0.623 Sum_probs=31.6
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999999999999999999999999999987
No 391
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.06 E-value=0.0022 Score=64.35 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=30.1
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|.+|+++|..+++.|.+|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 58999999999999999999999999999875
No 392
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.04 E-value=0.00097 Score=71.87 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=32.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35799999999999999999999999999999876
No 393
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.04 E-value=0.0023 Score=61.85 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=69.8
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYG 272 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
+|+|||+|.+|+-+|..|++.|.+|.++.+++....+... .+... .++....+..... ... ....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~---~~~-~~~~-- 65 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTY------GVWDD---DLSDLGLADCVEH---VWP-DVYE-- 65 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccc------cccHh---hhhhhchhhHHhh---cCC-CceE--
Confidence 4899999999999999999999999999988732111100 00000 0000000000000 000 0000
Q ss_pred CCCCCCCccccccc-CCCccccChhhhhhhhcCCeEEecC-ceEEeCC-----eEEEccCcEecccEEEEcCCCCC
Q 014522 273 LKRPSMGPLALKNT-MGKTPVLDIGALKKIRSGHINVVPG-IKRISCG-----QAELINGEKLDIDAIVLATGYRS 341 (423)
Q Consensus 273 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~-----~v~~~~g~~~~~D~vi~a~G~~~ 341 (423)
+..+.......... .-.+..+...+.+.+.+.+++++.+ +..+..+ .+.+++|+++.+|.||.|+|..+
T Consensus 66 ~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 66 YRFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00000000000000 0112345555666666667887655 5554433 25666888999999999999765
No 394
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.03 E-value=0.0011 Score=64.01 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=30.7
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 48999999999999999999999999999998
No 395
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.03 E-value=0.00078 Score=63.13 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=36.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCccccc
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGV--PFVMLERAECIASLWQK 62 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~--~v~lie~~~~~gg~~~~ 62 (423)
+..+|+|+|||.+||++|+.|++++- .|+++|.++.+||-.+.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 45689999999999999999999974 56779999999984433
No 396
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.02 E-value=0.0094 Score=55.86 Aligned_cols=35 Identities=37% Similarity=0.500 Sum_probs=31.0
Q ss_pred cccCCeEEECCChHHHHHHHHHHHc----CCCEEEEecC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQ----GVPFVMLERA 53 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~----g~~v~lie~~ 53 (423)
...+||+||||||.|.+.|..|... .+++.|+|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 3489999999999999999999976 3699999987
No 397
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.00 E-value=0.0012 Score=63.95 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=31.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3799999999999999999999999999999873
No 398
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.0063 Score=59.75 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCc-cEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNAS-PSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~-V~~v~r~~ 224 (423)
..+|+|||+|.+|+-+|..|.+.|.. +.++.++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 46899999999999999999999988 99999886
No 399
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.95 E-value=0.0023 Score=62.03 Aligned_cols=30 Identities=13% Similarity=0.397 Sum_probs=28.6
Q ss_pred EEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 195 LVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 195 ~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|||+|.+|+-+|..+++.|.+|+++.+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 599999999999999999999999999987
No 400
>PRK06753 hypothetical protein; Provisional
Probab=96.94 E-value=0.0027 Score=61.02 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=31.4
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
+|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999999983
No 401
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.93 E-value=0.0018 Score=62.55 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=30.9
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 379999999999999999999999999999875
No 402
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.93 E-value=0.00089 Score=64.43 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=30.3
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 69999999999999999999999999999875
No 403
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.92 E-value=0.0022 Score=62.40 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=30.4
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEec
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRS 223 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~ 223 (423)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999986
No 404
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.90 E-value=0.0021 Score=53.46 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=25.2
Q ss_pred EEECCCCCHHHHHHHHhccC-----CccEEEEecC
Q 014522 195 LVVGCGNSGMELSLDLSNHN-----ASPSMVVRSS 224 (423)
Q Consensus 195 ~ViG~G~~~~e~a~~l~~~g-----~~V~~v~r~~ 224 (423)
+|||+|++|+-++..|.+.. .+|+++.+++
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999883 3588888865
No 405
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.90 E-value=0.0016 Score=64.83 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=32.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+++++|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46799999999999999999999999999999887
No 406
>PRK09897 hypothetical protein; Provisional
Probab=96.87 E-value=0.0061 Score=60.92 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=28.9
Q ss_pred CEEEEECCCCCHHHHHHHHhccCC--ccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNA--SPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~--~V~~v~r~~ 224 (423)
++|+|||+|++|+-++..|.+.+. +|+++.+++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 589999999999999999988654 689998876
No 407
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0028 Score=57.61 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=77.7
Q ss_pred cchhhccccccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCC
Q 014522 11 EDFLSRRCIWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPE 90 (423)
Q Consensus 11 ~~~~~~~~~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (423)
.++.|.+. .+-+-+|||||..++.||-.|.-.|+++++.-|+-..-
T Consensus 189 DDlFsl~~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr--------------------------------- 234 (503)
T KOG4716|consen 189 DDLFSLPY-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR--------------------------------- 234 (503)
T ss_pred cccccccC-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc---------------------------------
Confidence 33344433 24578999999999999999999999999998864221
Q ss_pred CCCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 91 YPTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
-..+++.+.+.+..+++|+.+...+-.+.++..++ +...|...+.++ +..-.-.||.|+.|.|.
T Consensus 235 -GFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~l~v~~k~t~t--~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 235 -GFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GKLRVFYKNTNT--GEEGEEEYDTVLWAIGR 298 (503)
T ss_pred -cccHHHHHHHHHHHHHhCCceeecccceeeeeccC-CcEEEEeecccc--cccccchhhhhhhhhcc
Confidence 13467778888888889999877766666666544 455565554332 12245679999999993
No 408
>PRK08013 oxidoreductase; Provisional
Probab=96.84 E-value=0.0025 Score=62.00 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=31.8
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999999883
No 409
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.83 E-value=0.0025 Score=61.72 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=31.1
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999876
No 410
>PRK02106 choline dehydrogenase; Validated
Probab=96.82 E-value=0.0012 Score=67.05 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=32.3
Q ss_pred ccCCeEEECCChHHHHHHHHHHH-cCCCEEEEecCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRD-QGVPFVMLERAE 54 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~-~g~~v~lie~~~ 54 (423)
..+|++|||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 35899999999999999999999 799999999874
No 411
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.82 E-value=0.0014 Score=60.67 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=30.5
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999987
No 412
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.81 E-value=0.00033 Score=59.22 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=36.1
Q ss_pred cCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC-cccccc
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQ--GVPFVMLERAECIA-SLWQKR 63 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~--g~~v~lie~~~~~g-g~~~~~ 63 (423)
..||+|||+|.+|+++|+.+.++ .++|.|||.+-.+| |.|..+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGG 121 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGG 121 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccc
Confidence 46999999999999999999966 57999999987664 567553
No 413
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0019 Score=58.45 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=32.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIA 57 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~g 57 (423)
...|-|||||.||..+|++++++|++|.++|..+.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4569999999999999999999999999999876443
No 414
>PRK07588 hypothetical protein; Provisional
Probab=96.79 E-value=0.0032 Score=60.98 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=30.8
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 79999999999999999999999999999987
No 415
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.79 E-value=0.0025 Score=61.25 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=72.2
Q ss_pred EEEEECCCCCHHHHHHHH--hccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccc
Q 014522 193 KVLVVGCGNSGMELSLDL--SNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTES 270 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l--~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
+++|||+|++|.-+|..| ++.|.+|.++.+.+....+.... ...+.....+ .+..... .-..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~t------W~~~~~~~~~---~~~~v~~-------~w~~ 64 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRT------WCFWEKDLGP---LDSLVSH-------RWSG 64 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcc------cccccccccc---hHHHHhe-------ecCc
Confidence 489999999999999999 77788999998877431121110 0000000000 0111000 0000
Q ss_pred cCCCCCCCCccccc-cc-CCCccccChhhhhhhhcCCeEEecC-ceEEeCCe----EEEccCcEecccEEEEcCCCCCC
Q 014522 271 YGLKRPSMGPLALK-NT-MGKTPVLDIGALKKIRSGHINVVPG-IKRISCGQ----AELINGEKLDIDAIVLATGYRSN 342 (423)
Q Consensus 271 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~~----v~~~~g~~~~~D~vi~a~G~~~~ 342 (423)
..+..+........ .+ .-....+...+.+.+...++.++.. |..+..++ +++++|.++.|+.||-|.|..+.
T Consensus 65 ~~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 65 WRVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 00111111100000 00 0113345555566666566665554 77777654 57889999999999999996654
No 416
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0041 Score=64.92 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=35.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 187 EKYKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 187 ~~~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
....+++|.|||+|++|+-+|..|.+.|+-|++..|++
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 34468999999999999999999999999999999998
No 417
>PRK07190 hypothetical protein; Provisional
Probab=96.77 E-value=0.0046 Score=61.59 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=31.4
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 479999999999999999999999999999988
No 418
>PRK07045 putative monooxygenase; Reviewed
Probab=96.77 E-value=0.005 Score=59.57 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=32.0
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
-+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999983
No 419
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.76 E-value=0.0042 Score=59.00 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=30.5
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+++|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 58999999999999999999999999999994
No 420
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.75 E-value=0.0033 Score=62.65 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+++++|+|+|.+|+++|..|++.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46799999999999999999999999999998765
No 421
>PLN02697 lycopene epsilon cyclase
Probab=96.73 E-value=0.0041 Score=62.14 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=70.6
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhcccccc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESY 271 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
-+|+|||+|++|+-+|..|++.|.+|.++.+... +.+.. +. .. ..+ ..+. +.+.+... + . ...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p-~~~n~--Gv---W~-~~l-~~lg--l~~~i~~~---w-~-~~~-- 171 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FTNNY--GV---WE-DEF-KDLG--LEDCIEHV---W-R-DTI-- 171 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc-CCCcc--cc---ch-hHH-HhcC--cHHHHHhh---c-C-CcE--
Confidence 4799999999999999999999999999976531 11111 00 00 000 1010 00111000 0 0 000
Q ss_pred CCCCCCCCcccccc-cC-CCccccChhhhhhhhcCCeEEecC-ceEEeC--Ce---EEEccCcEecccEEEEcCCCCC
Q 014522 272 GLKRPSMGPLALKN-TM-GKTPVLDIGALKKIRSGHINVVPG-IKRISC--GQ---AELINGEKLDIDAIVLATGYRS 341 (423)
Q Consensus 272 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~--~~---v~~~~g~~~~~D~vi~a~G~~~ 341 (423)
+..+......... +. -.+..+...+.+.+.+.++++... +..+.. ++ +.+.+|.++.++.||.|+|..+
T Consensus 172 -v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 172 -VYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred -EEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0000000000000 00 112345566666666678887554 666653 33 3457888999999999999866
No 422
>PLN02785 Protein HOTHEAD
Probab=96.72 E-value=0.002 Score=65.45 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=32.1
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
...||+||||||.+|+.+|.+|.+ +.+|+|+|+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 357999999999999999999999 68999999875
No 423
>PRK10015 oxidoreductase; Provisional
Probab=96.67 E-value=0.0019 Score=63.30 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=31.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
-+|+|||+|++|+-+|..|++.|.+|.++.|.+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3799999999999999999999999999999873
No 424
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.013 Score=56.47 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=72.9
Q ss_pred CEEEEECCCCCHHHHHHHHhccC---CccEEEEecCceeecccccCCCh---HHHHHHHHhhccHHHHHHHHHHHHHH--
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHN---ASPSMVVRSSVHVLPREILGKST---FELATLMMKWLPLWLVDKILLILAWF-- 263 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g---~~V~~v~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-- 263 (423)
.+|+|||+|++|+.+|..|.+.- ..|+++...+..-.-..+..... .......+........+.|+.+++.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 57999999999999999999862 23888877773221111100000 00001111111111234455555443
Q ss_pred HhccccccCCCCCCCCcccccccCCCccccChhhhhhhhcCC---eEEecC----ceEEeCCe---EEEccCcEecccEE
Q 014522 264 ILGNTESYGLKRPSMGPLALKNTMGKTPVLDIGALKKIRSGH---INVVPG----IKRISCGQ---AELINGEKLDIDAI 333 (423)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~----i~~~~~~~---v~~~~g~~~~~D~v 333 (423)
...+.+......+..+|..+.. ..+.+.+...++++. +..+.. +...+..+ +...+|....||.+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG-----~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~ 156 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFG-----EYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADII 156 (474)
T ss_pred ccCChhhcCCccccccchhHHH-----HHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEE
Confidence 1122222333333333333221 112222333344443 444432 22221112 55678899999999
Q ss_pred EEcCCCCCCCC
Q 014522 334 VLATGYRSNVP 344 (423)
Q Consensus 334 i~a~G~~~~~~ 344 (423)
|+|||..+...
T Consensus 157 Vlatgh~~~~~ 167 (474)
T COG4529 157 VLATGHSAPPA 167 (474)
T ss_pred EEeccCCCCCc
Confidence 99999988753
No 425
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.59 E-value=0.019 Score=56.48 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=32.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 190 KGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..-+|+|||+|+.|.-+|..|++.|.+|.++.+.+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34589999999999999999999999999999986
No 426
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.59 E-value=0.004 Score=62.52 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=70.5
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQY 100 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
..+-+|||||.-|+.+|..|...|.+++++.-.+..- ...-...--..
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM--------------------------------erQLD~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM--------------------------------ERQLDRTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH--------------------------------HHhhhhHHHHH
Confidence 3457999999999999999999999999998754210 00011222345
Q ss_pred HHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 101 LESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
|+....+.|++++.+...+.+.... ..-.+...+ | ..+.+|.||.|+| .+|+.
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g~~--~~~~vr~~D------G-~~i~ad~VV~a~G--IrPn~ 245 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVGED--KVEGVRFAD------G-TEIPADLVVMAVG--IRPND 245 (793)
T ss_pred HHHHHHhhcceeecccchhhhhcCc--ceeeEeecC------C-CcccceeEEEecc--ccccc
Confidence 6667777899988887776655433 222255554 4 6899999999999 66653
No 427
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.56 E-value=0.0013 Score=64.32 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=27.8
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecCcee
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHV 227 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~ 227 (423)
+|+|||+|..|+-+|..+++.|.+|.++.+.+ ++
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~-~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG-FL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS-SS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc-cC
Confidence 58999999999999999999999999999998 44
No 428
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0022 Score=64.51 Aligned_cols=35 Identities=37% Similarity=0.489 Sum_probs=33.0
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERA 53 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~ 53 (423)
.+.+|+||||+|.+|..+|..|.+.|++|+|+|..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 46899999999999999999999889999999987
No 429
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.53 E-value=0.0031 Score=61.19 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=73.3
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhcccccc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESY 271 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
-+|+|||+|++|.-+|..|++.|.+|.++.+.+. +-.....+... ....+...++..... +. ......
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~-~G~k~~~~~~~--~~~~l~~l~~~~~~~-i~--------~~v~~~ 71 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE-PGAKPCCGGGL--SPRALEELIPDFDEE-IE--------RKVTGA 71 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC-CCCCcccccee--chhhHHHhCCCcchh-hh--------eeeeee
Confidence 4799999999999999999999999999999883 32222221100 000111111111100 00 011111
Q ss_pred CCCCCCCCccccc-----ccCCCccccChhhhhhhhcCCeEEecC--ceEEe--CCe---EEEccCcEecccEEEEcCCC
Q 014522 272 GLKRPSMGPLALK-----NTMGKTPVLDIGALKKIRSGHINVVPG--IKRIS--CGQ---AELINGEKLDIDAIVLATGY 339 (423)
Q Consensus 272 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~---v~~~~g~~~~~D~vi~a~G~ 339 (423)
.+..+ ....... ...-.+..++..+.+...+.+.+++.+ +..+. .++ .+..++.++.++.||.|.|.
T Consensus 72 ~~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 72 RIYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred EEEec-CCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 11111 0000000 111124456666777777889998876 44333 223 22233368999999999995
Q ss_pred CC
Q 014522 340 RS 341 (423)
Q Consensus 340 ~~ 341 (423)
..
T Consensus 151 ~s 152 (396)
T COG0644 151 NS 152 (396)
T ss_pred ch
Confidence 44
No 430
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.51 E-value=0.0047 Score=60.03 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=31.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
++|+|||+|..|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999987
No 431
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.0027 Score=61.58 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=34.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREI 232 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~ 232 (423)
-+|+|||+|..|+|+|...++.|.++.+++-+...+..+++
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msC 45 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSC 45 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccc
Confidence 47999999999999999999999999999888755544333
No 432
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.50 E-value=0.1 Score=53.90 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=64.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFI 98 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (423)
..++|+|||+|..|+.+|..+.++|. +|+++.+.+... ++. ...++.
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~------------------------------~~~--~~~e~~ 497 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS------------------------------MPG--SRKEVV 497 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc------------------------------CCC--CHHHHH
Confidence 35789999999999999999999995 899998754210 010 122222
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeE-EEEE---cc----cCCC------CCceEEEEeCEEEEccCCCCCC
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLW-RVKT---AS----SAGS------TKTEFEYICRWLVVATGENAER 162 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~v~~---~~----~~~~------~~~~~~~~~d~vviAtG~~~~~ 162 (423)
.+.+.|+++++++.++.+..+++ +.. .+.+ .. .++. ++....+.+|.||+|+| ..|
T Consensus 498 -----~a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG--~~p 567 (639)
T PRK12809 498 -----NAREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFG--FQA 567 (639)
T ss_pred -----HHHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcC--CCC
Confidence 24556999988888888764331 221 1111 10 0000 01335799999999999 444
No 433
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.47 E-value=0.0026 Score=60.12 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=36.3
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIAS 58 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg 58 (423)
+..+|++|||+|..|+.||..|++.|.+|+++|+....||
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 4589999999999999999999999999999999865555
No 434
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.47 E-value=0.0054 Score=59.47 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=30.7
Q ss_pred CEEEEECCCCCHHHHHHHHhcc--CCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNH--NASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~--g~~V~~v~r~~ 224 (423)
-+|+|||+|.+|+-+|..|++. |.+|+++.+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3799999999999999999998 99999999975
No 435
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.47 E-value=0.0075 Score=58.33 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=29.8
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEec
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRS 223 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~ 223 (423)
+|+|||+|++|+-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999998
No 436
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.45 E-value=0.0088 Score=57.85 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=31.3
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 479999999999999999999999999999987
No 437
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.033 Score=51.59 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=70.0
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
..++|+|||||-+++..|..|.+.+.+|+++=+.+..- .. .
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~ 182 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----E 182 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----H
Confidence 35699999999999999999999999999998876321 11 2
Q ss_pred HHHHHHHHc-CCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 100 YLESYAEKF-EINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
.+.+.+.+. ++.+++++.+..+..++ ... |...+..+ ....+.+|.++++.| ..|..
T Consensus 183 ~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~--v~l~~~~~---~~~~~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 183 ILVERLKKNVKIEVLTNTVVKEILGDD-VEG--VVLKNVKG---EEKELPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHHhcCCeEEEeCCceeEEecCc-cce--EEEEecCC---ceEEEEeceEEEecC--CCCch
Confidence 233333333 78889999999887654 123 44443211 446899999999999 55543
No 438
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=96.43 E-value=0.041 Score=52.67 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=30.0
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999999865
No 439
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.42 E-value=0.007 Score=58.67 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=30.0
Q ss_pred CEEEEECCCCCHHHHHHHHhcc---CCccEEEEec
Q 014522 192 KKVLVVGCGNSGMELSLDLSNH---NASPSMVVRS 223 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~---g~~V~~v~r~ 223 (423)
-+|+|||+|.+|+-+|..|++. |.+|+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4799999999999999999998 9999999995
No 440
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.41 E-value=0.0081 Score=60.79 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3579999999999999999999999999999987
No 441
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.39 E-value=0.006 Score=53.09 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+++++|||+|.+|..-+..|.+.|++|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 457899999999999999999999999999997654
No 442
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.39 E-value=0.0029 Score=63.91 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=30.1
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQG-VPFVMLERAE 54 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~ 54 (423)
|+||||||.+|+.+|.+|++.+ ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999874
No 443
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.39 E-value=0.0016 Score=61.78 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=29.5
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
+|+|||+|..|+-+|..|++.|.+|+++.|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999999983
No 444
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.35 E-value=0.0092 Score=58.30 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=30.1
Q ss_pred EEEEECCCCCHHHHHHHHhccC-CccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHN-ASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g-~~V~~v~r~~ 224 (423)
+|+|||+|..|+-+|..|++.| .+|+++.|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6999999999999999999998 4999999987
No 445
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.34 E-value=0.0058 Score=59.29 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=30.6
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|+.|.-+|..|++.|.+|.++.+.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999976
No 446
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.32 E-value=0.017 Score=53.01 Aligned_cols=102 Identities=21% Similarity=0.098 Sum_probs=76.9
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
.+++++|||||+-++..|--++-+|-++.++=|.+.+-- -..+.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR---------------------------------~FD~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR---------------------------------GFDEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc---------------------------------chhHHHHH
Confidence 578999999999999999999999999999988764310 13455666
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCcC
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERVM 164 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~ 164 (423)
.+.+..+..+++++.++.++.+....+ +...+.+.. + .....|.|+.|+| -.|+.
T Consensus 235 ~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~------~-~i~~vd~llwAiG--R~Pnt 289 (478)
T KOG0405|consen 235 LVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSH------G-TIEDVDTLLWAIG--RKPNT 289 (478)
T ss_pred HHHHHhhhcceeecccccceeeeecCC-CceEEEEec------c-ccccccEEEEEec--CCCCc
Confidence 777777778999999999999887664 333344443 3 3456999999999 45443
No 447
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.31 E-value=0.0081 Score=58.72 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHh-ccCCccEEEEecCc
Q 014522 190 KGKKVLVVGCGNSGMELSLDLS-NHNASPSMVVRSSV 225 (423)
Q Consensus 190 ~~~~v~ViG~G~~~~e~a~~l~-~~g~~V~~v~r~~~ 225 (423)
.+++|+|||+|++|+.+|..|+ +.|.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4689999999999999999765 56999999999983
No 448
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.29 E-value=0.0051 Score=60.14 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+++|+|||+|+.|+.+|..|++.|+.|+++.+.+
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 456999999999999999999999999999988887
No 449
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.29 E-value=0.012 Score=58.17 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=31.4
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 5789999999999999999999999999999864
No 450
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.23 E-value=0.0058 Score=60.12 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.6
Q ss_pred EEEEECCCCCHHHHHHHHhc----cCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSN----HNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~----~g~~V~~v~r~~ 224 (423)
+|+|||+|.+|+-+|..|++ .|.+|+++.+.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999954
No 451
>PRK13984 putative oxidoreductase; Provisional
Probab=96.22 E-value=0.16 Score=52.23 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=26.0
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC------CEEEEe
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV------PFVMLE 51 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~------~v~lie 51 (423)
..+|+|||||..|+.+|..|.+++. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999998753 566653
No 452
>PRK06126 hypothetical protein; Provisional
Probab=96.21 E-value=0.015 Score=58.94 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=32.1
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4579999999999999999999999999999987
No 453
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.02 Score=54.70 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=31.8
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCceee
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVL 228 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~ 228 (423)
-+|+|||+|..|+|.|.+.++.|++.++++.+-..+.
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 4799999999999999999999999888877654443
No 454
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.0045 Score=61.38 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=30.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
+|+|||.|++|+++|..|.++|++|+++|++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999875
No 455
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.15 E-value=0.012 Score=51.84 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=26.7
Q ss_pred EEEECCCCCHHHHHHHHhcc--CCccEEEEecC
Q 014522 194 VLVVGCGNSGMELSLDLSNH--NASPSMVVRSS 224 (423)
Q Consensus 194 v~ViG~G~~~~e~a~~l~~~--g~~V~~v~r~~ 224 (423)
.+|||||..|+.+|+.|+.+ .++|.++.-++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 68999999999999999987 45688887776
No 456
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.14 E-value=0.03 Score=53.38 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 93 TKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
....+.+.+...+++.+++++++++|+++ ++ +.|.+.+.. +...+++|+||+|||..+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~------~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPD------GQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECC------CceEEecCEEEEcCCCcc
Confidence 78899999999999999999999999998 23 457787754 225799999999999643
No 457
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.14 E-value=0.058 Score=53.54 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=30.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999999998875
No 458
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.14 E-value=0.016 Score=56.23 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=31.6
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.+|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 579999999999999999999999999999998
No 459
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.13 E-value=0.0098 Score=58.61 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=38.5
Q ss_pred ccccChhhhhhhhcCCeEEecC-ceEEe--CC----eEEEccCcEecccEEEEcCCCCCC
Q 014522 290 TPVLDIGALKKIRSGHINVVPG-IKRIS--CG----QAELINGEKLDIDAIVLATGYRSN 342 (423)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~-i~~~~--~~----~v~~~~g~~~~~D~vi~a~G~~~~ 342 (423)
+..++..+.+...+.+++++.+ +..+. ++ .|++++|.++++|.+|=|+|+...
T Consensus 153 R~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4467777888888889999887 54433 33 367789999999999999998664
No 460
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.09 E-value=0.015 Score=54.80 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=31.1
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+|+|||||.+|+-.|..|+++|.+|.++.++.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3689999999999999999999999999998765
No 461
>PRK11445 putative oxidoreductase; Provisional
Probab=96.09 E-value=0.0079 Score=57.32 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=29.6
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|++|+-+|..|++. .+|+++.|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 699999999999999999999 9999999987
No 462
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.01 E-value=0.1 Score=49.19 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCcccccccCCceee--cCCCc---cccCCCCC----CCCCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQ----GVPFVMLERAECIASLWQKRTYDRLNL--HLPKQ---FCQLPKLQ----FPEDF 88 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~~~~~~~~~~~--~~~~~---~~~~~~~~----~~~~~ 88 (423)
..|.|||+|-++..+-..|... ..++.+|-|....- .-.|..+.. ..|.. ++.++.-. .+...
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~----p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~ 263 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL----PMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQR 263 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC----ccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcC
Confidence 3499999999999999998865 23577787764220 001111111 11111 11111000 00000
Q ss_pred C--CCCCHHHHHHHHHHHHHH------cCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCC
Q 014522 89 P--EYPTKRQFIQYLESYAEK------FEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENA 160 (423)
Q Consensus 89 ~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~ 160 (423)
. .-++.+.+.+-..-+.++ ..+.....++|.++....+ +.+.+.+..... ++..++++|.||+||| -
T Consensus 264 ~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~--~~~~t~~~D~vIlATG--Y 338 (436)
T COG3486 264 LLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHET--GELETVETDAVILATG--Y 338 (436)
T ss_pred ccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEEEEEeeccC--CCceEEEeeEEEEecc--c
Confidence 0 112333333332222222 2455677888999988765 557787766422 2557899999999999 4
Q ss_pred CCcCC
Q 014522 161 ERVMP 165 (423)
Q Consensus 161 ~~~~p 165 (423)
....|
T Consensus 339 ~~~~P 343 (436)
T COG3486 339 RRAVP 343 (436)
T ss_pred ccCCc
Confidence 44444
No 463
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.00 E-value=0.061 Score=52.27 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=66.1
Q ss_pred EEECCChHHHHHH-HHHH----HcCCCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCCCHHHHHH
Q 014522 25 VIVGAGPSGLATA-ACLR----DQGVPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYPTKRQFIQ 99 (423)
Q Consensus 25 vIIGaG~aGl~~A-~~L~----~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
+|++-|.-|+..+ ..+. +.|.+|++++..+.. ....++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6788888888887 4443 459999999875421 12346777
Q ss_pred HHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCC
Q 014522 100 YLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGE 158 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~ 158 (423)
.+.+.+++.++.++.+++|.++...+ +...+.... + ++...+++|.||+|+|.
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~-~---g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTR-N---HGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEee-C---CceEEEECCEEEEeCCC
Confidence 88888888899999999999998765 433222221 1 13357999999999994
No 464
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.00 E-value=0.2 Score=51.10 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=63.8
Q ss_pred cCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCcccccccCCceeecCCCccccCCCCCCCCCCCCCC-CHHHHH
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQG-VPFVMLERAECIASLWQKRTYDRLNLHLPKQFCQLPKLQFPEDFPEYP-TKRQFI 98 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g-~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (423)
..+|+|||+|..|+.+|..+.+.+ .+++|+.+.+.. .++ ....+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~---------------------------------~~~~~~~~~~ 313 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRE---------------------------------DMPAHDEEIE 313 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcc---------------------------------cCCCCHHHHH
Confidence 578999999999999999999998 578888875411 001 112222
Q ss_pred HHHHHHHHHcCCceeccceEEEEEEeCCCCeEE-----EEEc--ccCCC----CCceEEEEeCEEEEccCCCCCCc
Q 014522 99 QYLESYAEKFEINPRFNECVQSARYDETSGLWR-----VKTA--SSAGS----TKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-----v~~~--~~~~~----~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
.+.+.++++++++.+..+..+++ +... +... +.++. .+....+.+|.||+|+| ..|.
T Consensus 314 -----~a~~~GVki~~~~~~~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G--~~p~ 381 (564)
T PRK12771 314 -----EALREGVEINWLRTPVEIEGDEN-GATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIG--QDID 381 (564)
T ss_pred -----HHHHcCCEEEecCCcEEEEcCCC-CEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcC--CCCc
Confidence 23446899888888888865432 2211 1110 00000 01336899999999999 5543
No 465
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.99 E-value=0.018 Score=58.87 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
....+|+|||+|..|+-+|..|++.|.+|+++.|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456789999999999999999999999999999976
No 466
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.97 E-value=0.017 Score=55.94 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=32.0
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
.+|+|||+|..|+-+|..|++.|.+|+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999999983
No 467
>PRK07538 hypothetical protein; Provisional
Probab=95.97 E-value=0.016 Score=56.62 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=30.8
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
+|+|||+|..|+-+|..|++.|.+|+++.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 69999999999999999999999999999987
No 468
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.92 E-value=0.017 Score=50.18 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEec
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRS 223 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~ 223 (423)
..+++++|||+|.+|...+..|.+.|++|+++.+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 46789999999999999999999999999999654
No 469
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.90 E-value=0.021 Score=58.02 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=32.1
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4579999999999999999999999999999987
No 470
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.85 E-value=0.019 Score=50.25 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+++++|||||.+|..=+..|.+.|++|+++...-
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 357899999999999999999999999999996543
No 471
>PRK06185 hypothetical protein; Provisional
Probab=95.83 E-value=0.018 Score=56.12 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3579999999999999999999999999999986
No 472
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.71 E-value=0.11 Score=52.19 Aligned_cols=34 Identities=18% Similarity=0.511 Sum_probs=31.7
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.-+|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3479999999999999999999999999999887
No 473
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.59 E-value=0.017 Score=56.05 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=35.7
Q ss_pred cccCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCccccccc
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQGVPFVMLERAECIASLWQKRT 64 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~ 64 (423)
+..+||+|+|-|..-..+|..|.+.|.+|+-+|+++..||.|....
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 3578999999999999999999999999999999999999887643
No 474
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.56 E-value=0.013 Score=58.20 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=33.8
Q ss_pred cccCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCC
Q 014522 19 IWVNGPVIVGAGPSGLATAACLRDQ-GVPFVMLERAECI 56 (423)
Q Consensus 19 ~~~~~vvIIGaG~aGl~~A~~L~~~-g~~v~lie~~~~~ 56 (423)
...||.+|||||.||+.+|..|.+. ..+|+++|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4589999999999999999999998 4799999987544
No 475
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.54 E-value=0.012 Score=48.85 Aligned_cols=32 Identities=38% Similarity=0.480 Sum_probs=29.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
+|.|||||..|.++|..|+++|.+|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999864
No 476
>PRK06996 hypothetical protein; Provisional
Probab=95.52 E-value=0.01 Score=57.58 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCEEEEECCCCCHHHHHHHHhccC----CccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHN----ASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g----~~V~~v~r~~ 224 (423)
..+|+|||+|.+|+-+|..|++.| .+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 357999999999999999999987 3699999976
No 477
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.34 E-value=0.013 Score=40.97 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=27.2
Q ss_pred EECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 196 VVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 196 ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999998
No 478
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.31 E-value=0.017 Score=47.61 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHhccCCccEEEEecCceeecccccCCChHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccCC
Q 014522 194 VLVVGCGNSGMELSLDLSNHNASPSMVVRSSVHVLPREILGKSTFELATLMMKWLPLWLVDKILLILAWFILGNTESYGL 273 (423)
Q Consensus 194 v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (423)
|+|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~------------------------------------------------- 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP------------------------------------------------- 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-------------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-------------------------------------------------
Q ss_pred CCCCCCcccccccCCCccccChhhhhhhhcCCeEEecC-ceEEeCCeEEEccC--cEecccEEEEcC
Q 014522 274 KRPSMGPLALKNTMGKTPVLDIGALKKIRSGHINVVPG-IKRISCGQAELING--EKLDIDAIVLAT 337 (423)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~~v~~~~g--~~~~~D~vi~a~ 337 (423)
..+.+++.++++... -...........+- ..-++|.||+|+
T Consensus 32 -----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 32 -----------------------RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp -----------------------HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred -----------------------cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
No 479
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.022 Score=50.42 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=31.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 22 NGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 22 ~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
++++|||+|..|.+.|..|.+.|..|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 369999999999999999999999999999975
No 480
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.24 E-value=0.032 Score=58.85 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=30.2
Q ss_pred EEEEECCCCCHHHHHHHHhcc--CCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNH--NASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~--g~~V~~v~r~~ 224 (423)
+|+|||+|..|+-+|..|++. |.+|+++.+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 699999999999999999998 78999999987
No 481
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.21 E-value=0.03 Score=53.66 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=32.8
Q ss_pred CCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
.++++|||||.+|++.|..|++.|.+|+++.++|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5789999999999999999999999999999998
No 482
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.19 E-value=0.12 Score=51.45 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=31.1
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999876
No 483
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.09 E-value=0.17 Score=50.57 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=29.3
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|.+|+-+|..+++.|. |.++.+.+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 379999999999999999999997 99998886
No 484
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.90 E-value=0.26 Score=48.39 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=28.6
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
-+|+|||+|..|+-+|..+. .|.+|.++.+.+
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~ 36 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLR-KDLKILMVSKGK 36 (433)
T ss_pred ccEEEECchHHHHHHHHHhc-cCCCEEEEecCC
Confidence 47999999999999999974 689999999887
No 485
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.90 E-value=0.03 Score=47.70 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.1
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 23 GPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 23 ~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999865
No 486
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.89 E-value=0.073 Score=48.40 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=28.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHhcc-CC-ccEEEEecC
Q 014522 188 KYKGKKVLVVGCGNSGMELSLDLSNH-NA-SPSMVVRSS 224 (423)
Q Consensus 188 ~~~~~~v~ViG~G~~~~e~a~~l~~~-g~-~V~~v~r~~ 224 (423)
....-+++|+|||.-|+.+|..+.+. +. +|-++....
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 33456899999999999999999876 43 477775554
No 487
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.85 E-value=0.067 Score=53.74 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=30.0
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERA 53 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~ 53 (423)
..++|+|||+|.+|.-.|.+|.+...+|++.-|.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 3678999999999999999999988898888776
No 488
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.85 E-value=0.087 Score=54.34 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=31.9
Q ss_pred CCEEEEECCCCCHHHHHHHHhcc-CCccEEEEecCc
Q 014522 191 GKKVLVVGCGNSGMELSLDLSNH-NASPSMVVRSSV 225 (423)
Q Consensus 191 ~~~v~ViG~G~~~~e~a~~l~~~-g~~V~~v~r~~~ 225 (423)
.-+|+|||+|++|+-+|..|++. |.+|.++.+.+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 34799999999999999999995 999999999873
No 489
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.81 E-value=0.075 Score=51.23 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHcCCceeccceEEEEEEeCCCCeEEEEEcccCCCCCceEEEEeCEEEEccCCCCCCc
Q 014522 92 PTKRQFIQYLESYAEKFEINPRFNECVQSARYDETSGLWRVKTASSAGSTKTEFEYICRWLVVATGENAERV 163 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~ 163 (423)
.....+...+.+.+.+ |++++.++.|.+++.++ +.|.|.+.+ + ..+++|.||+|+|.|+...
T Consensus 132 idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~------g-~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDAN------G-EVIAASVVVLANGAQAGQL 193 (381)
T ss_pred cChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCC------C-CEEEcCEEEEcCCcccccc
Confidence 3556777777777777 99999999999998765 667777765 4 4689999999999877544
No 490
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.80 E-value=0.025 Score=54.41 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=31.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccCCccEEEEecCc
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHNASPSMVVRSSV 225 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~~ 225 (423)
++|+|||+|.+|+++|..|++.|.+|+++..++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5899999999999999999999999999998763
No 491
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.57 E-value=0.026 Score=43.20 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.6
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERA 53 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~ 53 (423)
.++|+|||||..|..-+..|.+.|.+|+++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 568999999999999999999999999999987
No 492
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.54 E-value=0.077 Score=49.32 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=30.3
Q ss_pred EEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 193 KVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 193 ~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
++.|+|+|.+|.-++..|++.|.+|+++.|++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 78999999999999999999998899999987
No 493
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.51 E-value=0.083 Score=51.02 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=30.7
Q ss_pred CEEEEECCCCCHHHHHHHHhccC--CccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNHN--ASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~g--~~V~~v~r~~ 224 (423)
-+|+|||+|.+|+-+|..|++.. .+|.++.+..
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 47999999999999999999998 7899999987
No 494
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.45 E-value=0.058 Score=46.93 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=31.2
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGVPFVMLERAE 54 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~~ 54 (423)
.++|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999998754
No 495
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.38 E-value=0.073 Score=42.94 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=31.6
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVP-FVMLERAE 54 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~-v~lie~~~ 54 (423)
...+++|||+|-+|.+++..|...|.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 466899999999999999999999986 99999864
No 496
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.38 E-value=0.056 Score=44.83 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.7
Q ss_pred ccCCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 014522 20 WVNGPVIVGAGPSGLATAACLRDQGVPFVMLERA 53 (423)
Q Consensus 20 ~~~~vvIIGaG~aGl~~A~~L~~~g~~v~lie~~ 53 (423)
...+|+|||||..|..-|..|.+.|.+|++|++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3568999999999999999999999999999653
No 497
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.36 E-value=0.49 Score=48.63 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=30.5
Q ss_pred CEEEEECCCCCHHHHHHHHhcc--CCccEEEEecC
Q 014522 192 KKVLVVGCGNSGMELSLDLSNH--NASPSMVVRSS 224 (423)
Q Consensus 192 ~~v~ViG~G~~~~e~a~~l~~~--g~~V~~v~r~~ 224 (423)
-+|+|||+|..|+-+|..+++. |.+|.++.+.+
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4799999999999999999998 99999999876
No 498
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.25 E-value=0.052 Score=52.91 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCcccccccCC--ceeec
Q 014522 31 PSGLATAACLRDQGVPFVMLERAECIASLWQKRTYD--RLNLH 71 (423)
Q Consensus 31 ~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~--~~~~~ 71 (423)
.|||+||..|++.|++|+|+|+++.+||.......+ +...+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e 43 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFE 43 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeec
Confidence 489999999999999999999999999976665444 44443
No 499
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.24 E-value=0.032 Score=42.68 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHhccCCccEEEEecC
Q 014522 189 YKGKKVLVVGCGNSGMELSLDLSNHNASPSMVVRSS 224 (423)
Q Consensus 189 ~~~~~v~ViG~G~~~~e~a~~l~~~g~~V~~v~r~~ 224 (423)
..+++++|||+|..|..-+..|.+.|++|+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 467899999999999999999999999999998874
No 500
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.23 E-value=0.057 Score=43.53 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=30.3
Q ss_pred cCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCC
Q 014522 21 VNGPVIVGAGPSGLATAACLRDQGV-PFVMLERAE 54 (423)
Q Consensus 21 ~~~vvIIGaG~aGl~~A~~L~~~g~-~v~lie~~~ 54 (423)
..+|+|||+|.-|..+|..|++.|. +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3579999999999999999999998 899999863
Done!