BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014523
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 119/305 (39%), Gaps = 43/305 (14%)
Query: 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIA 60
+N S SH K R I + Y+Y+N G + GR +DG + G +I
Sbjct: 187 LNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRXIYDGEVLIAHKGKLIQ 246
Query: 61 QGSQFSLRXXXXXXXXXXXXXXXGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMS 120
+ + S + I + S +T +V Q L + F
Sbjct: 247 RNDRLSFKNVNL----------------IYADIATDSAETP-ETVLTQDDLEKEFEFW-- 287
Query: 121 LSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLV 180
E + G L+DY R+S + GF+L LSGGADSS+ A V +
Sbjct: 288 -------------EATSLG----LFDYXRKSRSKGFVLSLSGGADSSACAIXVAEXIRKG 330
Query: 181 VKEIANGDEQVKADA---IRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAK 237
+KE+ K++ + + F ++++ T + + NS ET AK
Sbjct: 331 LKELGLTAFLQKSNXETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAK 390
Query: 238 KLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIF 297
LA+ IG+ + S+D + + + + + + ++ D++ T + + GR I+
Sbjct: 391 TLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDI----TLQNIQARGRAPIIW 446
Query: 298 HCGPV 302
V
Sbjct: 447 XLTNV 451
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 274 KLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 333
+ DE D+ Y+ L+ R PV ++ L T +E VK FF+ +S
Sbjct: 526 QTDERDL-XPYDVLARIERKAIKERLSPVQVYTALLTE--GPYTKNEFKYWVKKFFRLWS 582
Query: 334 INRHKMTVLTPSYHAESYS 352
IN+ K L PS+H + ++
Sbjct: 583 INQWKRERLAPSFHXDDFN 601
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAN 186
+L DY++++GA GF+L +SGG DS+ + G + QL V+EI N
Sbjct: 29 FLKDYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVEEIRN 68
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 30/128 (23%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 202
+L Y++++GA GF+L +SGG DS+ + G + QL V+ I R
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVESI---------------REE 68
Query: 203 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 262
G+ A+ I + G++ + ++ A K SW D I + VSAF
Sbjct: 69 GGD--------AQFIAVRLPHGTQQDEDDAQL-ALKFIKPDKSWKFD--IKSTVSAFSDQ 117
Query: 263 FQTLTGKR 270
+Q TG +
Sbjct: 118 YQQETGDQ 125
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 146 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGE 205
DY+ ++G G ++ LSGG DS+ V L V A G E+V+A + RY G
Sbjct: 293 DYIGKNGFPGAIIGLSGGVDSALV---------LAVAVDALGAERVRA-VMMPSRYTAGI 342
Query: 206 FPTESREFAKRI 217
T++ + A+R+
Sbjct: 343 STTDAADMARRV 354
>pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
Length = 249
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADS---SSVAAIVGCMCQLVVKEIANGDEQVKADAIRIG 199
WL D A GF++ LSGG DS +S+A G ++ N Q DA+ +
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQDALELI 78
Query: 200 RYANGEFPTESREFAKRIFYTVFMGSENS 228
N E T S + A Y F+ S S
Sbjct: 79 EMLNIEHYTISIQPA----YEAFLASTQS 103
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI 184
++ DYLR +G +L +SGG DSS+ G + QL V+ +
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDSST----AGRLAQLAVERL 73
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 143 WLWDYL----RRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANG 187
+L D+L ++ G + LSGG DS A+VG +CQ V KE A+
Sbjct: 11 YLCDFLEKEVQKRGFKKVVYGLSGGLDS----AVVGVLCQKVFKENAHA 55
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
Length = 257
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 144 LWDYLRRSGASGFLLPLSGGADSSSVA 170
+ +++R G +G ++ +SGG DS++VA
Sbjct: 13 ILEFIREKGNNGVVIGISGGVDSATVA 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,649,447
Number of Sequences: 62578
Number of extensions: 456640
Number of successful extensions: 977
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 17
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)