Query 014523
Match_columns 423
No_of_seqs 412 out of 2198
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2303 Predicted NAD synthase 100.0 4E-136 9E-141 1034.9 28.5 388 1-389 197-700 (706)
2 PLN02339 NAD+ synthase (glutam 100.0 6.4E-96 1E-100 796.7 35.9 387 1-387 196-697 (700)
3 PRK02628 nadE NAD synthetase; 100.0 3.7E-47 7.9E-52 414.1 28.5 322 1-362 200-660 (679)
4 PRK13981 NAD synthetase; Provi 100.0 1.3E-38 2.8E-43 339.0 27.9 278 1-371 166-537 (540)
5 PF02540 NAD_synthase: NAD syn 99.9 7.6E-28 1.7E-32 233.0 11.9 158 136-340 1-240 (242)
6 PRK13980 NAD synthetase; Provi 99.9 7.1E-26 1.5E-30 221.6 15.0 172 132-350 9-261 (265)
7 cd00553 NAD_synthase NAD+ synt 99.9 5.4E-24 1.2E-28 206.2 15.1 161 132-339 2-248 (248)
8 COG0171 NadE NAD synthase [Coe 99.9 9E-24 2E-28 206.8 14.8 167 131-349 3-259 (268)
9 PRK00768 nadE NAD synthetase; 99.9 4.1E-23 8.8E-28 202.3 13.7 103 133-264 18-121 (268)
10 PTZ00323 NAD+ synthase; Provis 99.9 2.3E-21 5E-26 192.6 14.4 100 132-263 25-124 (294)
11 PRK00876 nadE NAD synthetase; 99.8 1.3E-19 2.9E-24 182.3 15.9 93 132-260 11-104 (326)
12 TIGR00552 nadE NAD+ synthetase 99.8 1.3E-19 2.9E-24 175.8 14.1 90 134-259 3-92 (250)
13 PF03054 tRNA_Me_trans: tRNA m 99.4 5.6E-13 1.2E-17 135.9 8.9 115 154-306 1-141 (356)
14 COG0482 TrmU Predicted tRNA(5- 99.3 3.2E-12 7E-17 129.5 9.2 108 153-298 3-133 (356)
15 PRK14665 mnmA tRNA-specific 2- 98.9 3.2E-09 7E-14 108.8 9.7 103 154-294 6-126 (360)
16 KOG2805 tRNA (5-methylaminomet 98.9 6.7E-09 1.4E-13 103.0 10.0 104 153-296 5-136 (377)
17 PRK14664 tRNA-specific 2-thiou 98.8 1.7E-08 3.8E-13 103.5 9.3 101 153-294 5-121 (362)
18 TIGR00420 trmU tRNA (5-methyla 98.8 2.6E-08 5.7E-13 101.8 9.6 102 155-294 2-130 (352)
19 COG1606 ATP-utilizing enzymes 98.7 3.2E-08 7E-13 96.1 8.9 74 144-256 10-83 (269)
20 cd07570 GAT_Gln-NAD-synth Glut 98.7 3.7E-08 7.9E-13 95.2 8.9 82 1-88 167-249 (261)
21 PRK02628 nadE NAD synthetase; 98.7 4.8E-09 1E-13 115.6 3.1 74 298-375 563-637 (679)
22 TIGR00268 conserved hypothetic 98.7 7.1E-08 1.5E-12 94.1 10.7 76 143-258 4-79 (252)
23 PRK00143 mnmA tRNA-specific 2- 98.7 6.4E-08 1.4E-12 98.7 9.4 102 155-294 2-129 (346)
24 cd07576 R-amidase_like Pseudom 98.6 4E-08 8.7E-13 94.3 6.3 81 1-88 163-244 (254)
25 cd01998 tRNA_Me_trans tRNA met 98.6 1.5E-07 3.3E-12 96.0 10.3 103 155-295 1-127 (349)
26 PLN02347 GMP synthetase 98.6 2.2E-07 4.8E-12 99.9 10.8 79 141-256 216-296 (536)
27 cd07586 nitrilase_8 Uncharacte 98.6 1.3E-07 2.8E-12 91.7 7.1 84 1-88 164-253 (269)
28 TIGR00884 guaA_Cterm GMP synth 98.5 4.8E-07 1E-11 91.2 9.8 77 140-256 6-83 (311)
29 PRK00509 argininosuccinate syn 98.5 1.5E-06 3.2E-11 90.3 13.6 101 153-292 2-120 (399)
30 PRK00074 guaA GMP synthase; Re 98.4 1E-06 2.3E-11 94.3 10.4 83 134-256 199-282 (511)
31 PRK10438 C-N hydrolase family 98.4 3.9E-07 8.4E-12 88.7 6.5 82 2-88 161-243 (256)
32 cd07573 CPA N-carbamoylputresc 98.4 7.1E-07 1.5E-11 87.3 6.9 83 2-87 173-266 (284)
33 COG0388 Predicted amidohydrola 98.4 8.4E-07 1.8E-11 86.6 7.2 83 1-87 171-254 (274)
34 cd01990 Alpha_ANH_like_I This 98.4 1.2E-06 2.6E-11 82.0 7.9 64 156-256 1-64 (202)
35 PRK13820 argininosuccinate syn 98.4 2.2E-06 4.7E-11 89.0 10.5 102 153-292 2-120 (394)
36 cd07580 nitrilase_2 Uncharacte 98.3 5.2E-07 1.1E-11 87.7 5.3 84 1-87 165-253 (268)
37 cd01996 Alpha_ANH_like_III Thi 98.3 2.3E-06 5.1E-11 76.4 9.1 71 155-262 3-74 (154)
38 TIGR00364 exsB protein. This p 98.3 1.2E-06 2.5E-11 82.4 7.4 61 156-254 1-61 (201)
39 cd07585 nitrilase_7 Uncharacte 98.3 9.9E-07 2.1E-11 85.2 7.0 83 1-87 161-246 (261)
40 PRK00919 GMP synthase subunit 98.3 2.5E-06 5.5E-11 85.9 9.6 82 134-256 5-86 (307)
41 cd07568 ML_beta-AS_like mammal 98.3 1.2E-06 2.5E-11 86.1 6.9 83 1-87 183-268 (287)
42 PRK04527 argininosuccinate syn 98.3 1.9E-06 4.1E-11 89.4 8.7 101 154-292 3-120 (400)
43 TIGR03381 agmatine_aguB N-carb 98.3 1.3E-06 2.8E-11 85.1 6.7 74 12-88 187-264 (279)
44 PF00733 Asn_synthase: Asparag 98.3 2.9E-06 6.3E-11 80.4 8.8 79 138-255 4-82 (255)
45 PRK11106 queuosine biosynthesi 98.3 2E-06 4.4E-11 83.3 7.5 64 154-255 2-66 (231)
46 cd01997 GMP_synthase_C The C-t 98.3 2.8E-06 6E-11 85.2 8.6 65 155-256 1-66 (295)
47 COG0603 Predicted PP-loop supe 98.3 2.8E-06 6.1E-11 81.6 8.0 67 153-257 2-68 (222)
48 cd07572 nit Nit1, Nit 2, and r 98.2 1.3E-06 2.9E-11 84.2 5.2 82 1-87 174-256 (265)
49 cd01993 Alpha_ANH_like_II This 98.2 5.4E-06 1.2E-10 75.7 8.8 70 155-256 1-72 (185)
50 TIGR03573 WbuX N-acetyl sugar 98.2 6.7E-06 1.5E-10 83.9 10.1 65 154-255 60-124 (343)
51 cd07582 nitrilase_4 Uncharacte 98.2 3.5E-06 7.5E-11 83.5 6.7 83 1-87 194-281 (294)
52 cd07584 nitrilase_6 Uncharacte 98.1 3.5E-06 7.6E-11 81.2 6.3 80 2-87 168-248 (258)
53 cd07197 nitrilase Nitrilase su 98.1 4.1E-06 8.8E-11 79.7 6.5 80 1-87 164-244 (253)
54 cd07565 aliphatic_amidase alip 98.1 4.3E-06 9.3E-11 83.1 6.8 82 1-88 174-256 (291)
55 PRK01565 thiamine biosynthesis 98.1 8.2E-06 1.8E-10 84.7 8.7 69 155-261 178-252 (394)
56 PF06508 QueC: Queuosine biosy 98.1 7.1E-06 1.5E-10 78.3 7.4 64 155-256 1-65 (209)
57 cd01991 Asn_Synthase_B_C The C 98.1 8E-06 1.7E-10 79.0 7.6 64 154-254 16-79 (269)
58 PLN02747 N-carbamolyputrescine 98.1 6.6E-06 1.4E-10 81.4 6.8 74 11-87 192-273 (296)
59 PLN00202 beta-ureidopropionase 98.1 5.8E-06 1.3E-10 86.2 6.2 84 1-88 267-366 (405)
60 PRK13286 amiE acylamide amidoh 98.0 9.5E-06 2.1E-10 83.0 6.7 81 2-88 188-269 (345)
61 TIGR02432 lysidine_TilS_N tRNA 98.0 2E-05 4.4E-10 72.7 8.1 66 155-254 1-68 (189)
62 TIGR03108 eps_aminotran_1 exos 98.0 2.2E-05 4.8E-10 85.9 9.6 88 131-255 234-323 (628)
63 TIGR01536 asn_synth_AEB aspara 98.0 4.6E-05 1E-09 80.4 11.6 87 132-254 230-319 (467)
64 cd07587 ML_beta-AS mammalian-l 98.0 8.3E-06 1.8E-10 83.9 5.6 83 1-87 246-344 (363)
65 cd07575 Xc-1258_like Xanthomon 98.0 1.2E-05 2.7E-10 77.6 6.2 80 2-87 160-240 (252)
66 cd07581 nitrilase_3 Uncharacte 98.0 1.3E-05 2.7E-10 77.1 6.2 79 1-88 168-247 (255)
67 cd07583 nitrilase_5 Uncharacte 97.9 1.3E-05 2.9E-10 77.0 6.1 80 1-87 164-244 (253)
68 cd07574 nitrilase_Rim1_like Un 97.9 1.4E-05 3.1E-10 78.0 5.9 84 1-88 174-267 (280)
69 cd07569 DCase N-carbamyl-D-ami 97.9 2.1E-05 4.6E-10 78.2 7.2 68 16-87 215-283 (302)
70 PRK13287 amiF formamidase; Pro 97.9 2.3E-05 5.1E-10 79.6 6.7 82 1-88 186-268 (333)
71 cd01994 Alpha_ANH_like_IV This 97.9 2.4E-05 5.2E-10 73.8 6.2 62 155-254 1-68 (194)
72 cd01713 PAPS_reductase This do 97.9 4.8E-05 1E-09 67.5 7.8 69 155-258 1-69 (173)
73 PLN00200 argininosuccinate syn 97.8 5.7E-05 1.2E-09 78.8 8.4 101 154-292 6-124 (404)
74 PRK09431 asnB asparagine synth 97.8 0.00018 3.8E-09 78.1 12.4 102 133-262 205-312 (554)
75 cd07577 Ph0642_like Pyrococcus 97.8 4.3E-05 9.3E-10 73.9 6.8 66 18-86 174-243 (259)
76 PLN02798 nitrilase 97.8 3.1E-05 6.8E-10 76.4 5.9 83 1-87 185-269 (286)
77 PRK14561 hypothetical protein; 97.8 6.4E-05 1.4E-09 70.8 7.4 61 155-256 2-62 (194)
78 TIGR00032 argG argininosuccina 97.8 6.7E-05 1.4E-09 78.1 8.2 63 155-256 1-64 (394)
79 TIGR03104 trio_amidotrans aspa 97.8 0.0001 2.2E-09 80.4 9.8 86 132-254 237-327 (589)
80 cd01992 PP-ATPase N-terminal d 97.8 9.2E-05 2E-09 67.8 8.1 62 155-250 1-64 (185)
81 PRK08384 thiamine biosynthesis 97.7 9.3E-05 2E-09 76.7 8.6 98 154-293 181-296 (381)
82 PTZ00077 asparagine synthetase 97.7 0.00017 3.6E-09 78.8 10.8 99 134-262 220-320 (586)
83 cd07564 nitrilases_CHs Nitrila 97.7 5E-05 1.1E-09 75.4 6.2 78 6-87 185-277 (297)
84 TIGR00342 thiazole biosynthesi 97.7 0.00016 3.4E-09 74.7 9.5 101 154-292 173-286 (371)
85 cd01999 Argininosuccinate_Synt 97.7 8.9E-05 1.9E-09 77.0 7.7 98 156-291 1-116 (385)
86 cd07578 nitrilase_1_R1 First n 97.7 4.9E-05 1.1E-09 73.5 5.4 62 21-87 183-245 (258)
87 PRK08349 hypothetical protein; 97.7 0.00019 4.1E-09 67.4 8.6 58 155-253 2-66 (198)
88 PLN02549 asparagine synthase ( 97.6 0.00034 7.5E-09 76.2 11.3 97 134-262 208-306 (578)
89 PRK08576 hypothetical protein; 97.5 0.00044 9.6E-09 72.9 10.3 67 145-249 226-292 (438)
90 PF01171 ATP_bind_3: PP-loop f 97.5 0.00029 6.3E-09 65.1 7.6 68 155-254 1-68 (182)
91 cd01995 ExsB ExsB is a transcr 97.5 0.00049 1.1E-08 62.5 8.8 59 155-252 1-59 (169)
92 KOG0571 Asparagine synthase (g 97.5 0.00051 1.1E-08 71.4 9.2 77 155-263 227-305 (543)
93 PLN02504 nitrilase 97.4 0.00019 4.2E-09 73.3 5.6 72 14-88 215-306 (346)
94 cd01712 ThiI ThiI is required 97.4 0.00034 7.4E-09 64.2 6.8 19 155-173 1-19 (177)
95 COG0367 AsnB Asparagine syntha 97.4 0.00079 1.7E-08 72.9 10.2 95 132-262 207-305 (542)
96 TIGR03679 arCOG00187 arCOG0018 97.3 0.00035 7.6E-09 67.0 5.3 23 231-253 43-65 (218)
97 PRK13795 hypothetical protein; 97.3 0.0017 3.7E-08 71.6 11.2 85 134-257 225-309 (636)
98 COG0519 GuaA GMP synthase, PP- 97.3 0.00098 2.1E-08 66.0 8.2 69 151-256 19-88 (315)
99 PRK10696 tRNA 2-thiocytidine b 97.2 0.0017 3.8E-08 63.5 8.8 69 153-254 29-97 (258)
100 PRK13794 hypothetical protein; 97.1 0.0035 7.6E-08 67.0 11.6 81 135-253 230-310 (479)
101 cd07567 biotinidase_like bioti 97.1 0.0017 3.6E-08 65.3 7.7 74 3-83 204-279 (299)
102 PF02568 ThiI: Thiamine biosyn 97.0 0.0012 2.6E-08 62.7 6.0 72 154-263 4-83 (197)
103 PRK05253 sulfate adenylyltrans 97.0 0.0068 1.5E-07 61.1 11.5 69 153-255 27-95 (301)
104 COG0037 MesJ tRNA(Ile)-lysidin 96.8 0.0044 9.5E-08 61.1 8.4 69 154-257 22-91 (298)
105 PRK02090 phosphoadenosine phos 96.8 0.0063 1.4E-07 59.1 9.0 75 141-254 29-103 (241)
106 PRK10660 tilS tRNA(Ile)-lysidi 96.7 0.0036 7.9E-08 66.1 7.4 67 154-253 16-84 (436)
107 cd07579 nitrilase_1_R2 Second 96.7 0.0026 5.6E-08 62.9 5.8 63 18-84 191-255 (279)
108 PF01507 PAPS_reduct: Phosphoa 96.7 0.0065 1.4E-07 54.6 7.9 66 156-259 2-67 (174)
109 PRK08557 hypothetical protein; 96.6 0.021 4.6E-07 60.1 11.6 82 134-253 160-243 (417)
110 cd01986 Alpha_ANH_like Adenine 96.5 0.0056 1.2E-07 51.3 5.8 18 156-173 1-18 (103)
111 PRK01269 tRNA s(4)U8 sulfurtra 96.5 0.0092 2E-07 63.8 8.4 67 155-259 179-251 (482)
112 COG0137 ArgG Argininosuccinate 96.4 0.014 3E-07 60.4 8.6 67 153-257 4-71 (403)
113 cd07571 ALP_N-acyl_transferase 96.2 0.012 2.6E-07 57.7 7.1 57 12-81 194-251 (270)
114 PF00764 Arginosuc_synth: Argi 96.2 0.0099 2.2E-07 61.9 6.7 63 157-257 1-64 (388)
115 COG2117 Predicted subunit of t 96.2 0.014 2.9E-07 54.0 6.7 59 156-254 3-61 (198)
116 PRK05370 argininosuccinate syn 96.2 0.016 3.5E-07 61.0 8.1 74 152-263 10-85 (447)
117 KOG1622 GMP synthase [Nucleoti 96.1 0.031 6.6E-07 58.8 9.4 77 142-258 222-299 (552)
118 TIGR00289 conserved hypothetic 95.8 0.039 8.4E-07 53.4 8.2 24 231-254 45-68 (222)
119 COG0301 ThiI Thiamine biosynth 95.7 0.046 9.9E-07 56.9 8.7 71 155-263 177-254 (383)
120 COG1365 Predicted ATPase (PP-l 95.5 0.015 3.2E-07 55.9 4.0 60 150-250 55-116 (255)
121 TIGR02039 CysD sulfate adenyly 95.3 0.081 1.8E-06 53.3 8.8 68 154-255 20-87 (294)
122 PRK12563 sulfate adenylyltrans 95.1 0.24 5.2E-06 50.4 11.4 70 153-256 37-106 (312)
123 TIGR00434 cysH phosophoadenyly 94.8 0.2 4.4E-06 47.3 9.7 61 154-252 14-74 (212)
124 cd01984 AANH_like Adenine nucl 94.3 0.2 4.4E-06 40.0 7.1 18 156-173 1-18 (86)
125 TIGR02057 PAPS_reductase phosp 94.0 0.43 9.2E-06 46.2 10.0 57 153-246 25-81 (226)
126 KOG1706 Argininosuccinate synt 92.1 0.34 7.3E-06 49.1 6.2 59 151-249 3-61 (412)
127 COG0175 CysH 3'-phosphoadenosi 91.6 1.2 2.6E-05 43.9 9.6 68 154-259 40-107 (261)
128 KOG0807 Carbon-nitrogen hydrol 91.2 0.2 4.3E-06 49.1 3.5 83 3-88 193-276 (295)
129 TIGR00290 MJ0570_dom MJ0570-re 89.9 0.78 1.7E-05 44.5 6.3 19 155-173 2-20 (223)
130 PRK06850 hypothetical protein; 89.0 1.9 4.2E-05 46.6 9.1 38 135-174 17-55 (507)
131 TIGR03183 DNA_S_dndC putative 87.7 1.4 3E-05 47.1 6.9 22 153-174 13-34 (447)
132 COG2102 Predicted ATPases of P 87.7 2.1 4.5E-05 41.6 7.5 63 155-254 2-69 (223)
133 PRK00302 lnt apolipoprotein N- 87.1 1.6 3.4E-05 46.9 7.0 54 14-80 416-470 (505)
134 PF01902 ATP_bind_4: ATP-bindi 87.1 0.81 1.8E-05 44.2 4.4 63 155-253 2-67 (218)
135 cd07566 ScNTA1_like Saccharomy 79.4 1.2 2.6E-05 44.6 2.2 28 25-53 237-264 (295)
136 KOG0573 Asparagine synthase [A 76.9 1.7 3.8E-05 46.1 2.5 21 154-174 251-271 (520)
137 COG3969 Predicted phosphoadeno 74.6 7.1 0.00015 40.4 6.1 34 136-174 15-48 (407)
138 TIGR02026 BchE magnesium-proto 67.2 47 0.001 35.7 10.8 33 219-251 341-373 (497)
139 TIGR02055 APS_reductase thiore 57.8 27 0.00058 32.7 6.1 35 218-252 19-53 (191)
140 PLN02309 5'-adenylylsulfate re 53.7 67 0.0015 34.5 8.9 32 219-250 137-168 (457)
141 TIGR00424 APS_reduc 5'-adenyly 53.0 69 0.0015 34.5 8.9 32 219-250 142-173 (463)
142 COG0363 NagB 6-phosphogluconol 39.4 37 0.0008 33.2 4.0 33 131-163 7-41 (238)
143 PRK12358 putative 6-phosphoglu 37.9 40 0.00087 32.6 4.0 41 131-173 7-47 (239)
144 PF11230 DUF3029: Protein of u 34.9 45 0.00097 35.8 3.9 39 314-358 111-149 (487)
145 PRK03359 putative electron tra 32.6 1.1E+02 0.0025 30.2 6.2 70 144-250 73-145 (256)
146 PRK09762 galactosamine-6-phosp 31.0 64 0.0014 31.1 4.1 32 131-164 7-38 (232)
147 cd01455 vWA_F11C1-5a_type Von 30.9 1.6E+02 0.0034 28.1 6.6 53 216-268 113-166 (191)
148 PRK04447 hypothetical protein; 29.8 2.3E+02 0.0049 29.5 8.1 117 153-333 232-348 (351)
149 TIGR01198 pgl 6-phosphoglucono 28.7 80 0.0017 30.5 4.4 34 131-164 3-38 (233)
150 cd03030 GRX_SH3BGR Glutaredoxi 28.3 1E+02 0.0022 25.6 4.4 36 219-254 2-40 (92)
151 COG2205 KdpD Osmosensitive K+ 27.6 3.2E+02 0.0069 31.9 9.2 76 154-263 249-330 (890)
152 KOG2840 Uncharacterized conser 26.7 1.3E+02 0.0028 31.2 5.4 74 154-257 52-125 (347)
153 cd02903 Macro_BAL_like Macro d 26.5 1.9E+02 0.0041 25.4 6.0 63 189-251 43-112 (137)
154 PRK10490 sensor protein KdpD; 26.1 5.9E+02 0.013 29.6 11.5 46 218-263 281-332 (895)
155 PRK00443 nagB glucosamine-6-ph 26.1 79 0.0017 30.5 3.9 36 131-166 7-45 (261)
156 TIGR03471 HpnJ hopanoid biosyn 25.6 4.2E+02 0.0091 28.1 9.5 82 143-252 288-374 (472)
157 KOG3147 6-phosphogluconolacton 24.5 91 0.002 31.0 3.9 34 130-163 14-49 (252)
158 KOG0806 Carbon-nitrogen hydrol 24.5 38 0.00083 34.4 1.3 66 19-88 212-279 (298)
159 TIGR02610 PHA_gran_rgn putativ 24.1 1.2E+02 0.0026 25.4 4.0 43 7-58 9-54 (91)
160 cd01399 GlcN6P_deaminase GlcN6 23.7 70 0.0015 30.1 2.9 29 135-165 2-30 (232)
161 PF00701 DHDPS: Dihydrodipicol 23.0 3.3E+02 0.0072 26.7 7.7 40 144-183 27-66 (289)
162 KOG0805 Carbon-nitrogen hydrol 22.5 76 0.0016 31.8 2.9 67 15-84 209-295 (337)
163 PF09650 PHA_gran_rgn: Putativ 22.4 1.7E+02 0.0037 24.1 4.6 44 7-59 6-52 (87)
164 PTZ00285 glucosamine-6-phospha 21.8 1.2E+02 0.0026 29.5 4.2 39 131-169 7-48 (253)
165 COG4703 Uncharacterized protei 21.6 41 0.00088 27.0 0.7 33 349-383 37-69 (74)
166 PLN02360 probable 6-phosphoglu 21.4 1.3E+02 0.0028 29.7 4.4 33 131-163 17-51 (268)
167 PF04504 DUF573: Protein of un 21.4 99 0.0021 26.1 3.0 25 314-338 47-71 (98)
168 COG3946 VirJ Type IV secretory 21.0 71 0.0015 34.1 2.5 50 308-366 296-345 (456)
169 PF09547 Spore_IV_A: Stage IV 20.8 2.8E+02 0.0061 30.1 6.8 104 131-265 127-231 (492)
170 PRK12342 hypothetical protein; 20.6 2.3E+02 0.005 28.1 5.9 62 152-249 77-141 (254)
171 TIGR00502 nagB glucosamine-6-p 20.5 1.3E+02 0.0028 29.4 4.1 43 131-173 7-52 (259)
No 1
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.2e-136 Score=1034.94 Aligned_cols=388 Identities=61% Similarity=1.028 Sum_probs=378.5
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeeeeCCceeeeeCCCccCCcceEEEEEecc
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
+|.|||||+|||+++|.+||.++|.|+|++|+|+||+||||+|+||||||||+.||+|+||++||+++||+|++|+|||+
T Consensus 197 ~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlYydGca~Ia~NG~vlAqg~QFsl~DveVv~atvDle 276 (706)
T KOG2303|consen 197 TNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLYYDGCAMIAMNGSVLAQGSQFSLDDVEVVTATVDLE 276 (706)
T ss_pred ecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeEecchhheeecceeeeecccccccceEEEEEEecHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCchhhhhhccccceeeEEeecccCccccccCCCCCCcCCCCCCHHHHHhcHHHHHHHHHHHhCCCceEEec
Q 014523 81 AVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPL 160 (423)
Q Consensus 81 ~vr~~R~~~~s~~~~a~~~~~~~~v~~~~~l~~~~~~~~~p~~p~~~~~~~~~eei~~~~a~~L~Dylrrsg~~g~~l~L 160 (423)
++|+||..++|++.+++....|++|+++|+++...+...+|+.|+++.+|+|+|||+.||||||||||||||+.||||||
T Consensus 277 ~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPL 356 (706)
T KOG2303|consen 277 DVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPIEWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPL 356 (706)
T ss_pred HHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCcccccCCcHHHhccCchHHHHHHHHhcCCCceEEec
Confidence 99999999999999998888999999999999766656689999999999999999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHHHHHHH
Q 014523 161 SGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLA 240 (423)
Q Consensus 161 SGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA 240 (423)
|||+|||+||+||++||++|++|+++||+||+.|+|++..+ ..|+|++|+||||++|+||||+++|||+|||.+|++||
T Consensus 357 SGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~rak~La 435 (706)
T KOG2303|consen 357 SGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISYTPTDPADLCNRILYTCYMGSENSSKETRRRAKELA 435 (706)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCcCCCCHHHHHHhhhhhheeccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999977 58999999999999999999999999999999999999
Q ss_pred HHhCCceEEEecHHHHHHHHHHhhhhcCCCCccc----------------------------------------------
Q 014523 241 DEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK---------------------------------------------- 274 (423)
Q Consensus 241 ~~iG~~h~~i~Id~~v~a~~~~~~~~~g~~p~f~---------------------------------------------- 274 (423)
++||++|.+|+||.+|.+++++|..+||++|+|+
T Consensus 436 ~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enlaLQNiQARiRMvLaylfAqL~~wvr~~~GglLVLGS 515 (706)
T KOG2303|consen 436 NQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLALQNIQARIRMVLAYLFAQLLLWVRGRPGGLLVLGS 515 (706)
T ss_pred HhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 9999999999999999999999999999999999
Q ss_pred ----------------------------------------------------------------------cchhhcCCCc
Q 014523 275 ----------------------------------------------------------------------LDEVDMGMTY 284 (423)
Q Consensus 275 ----------------------------------------------------------------------tDE~dmGmtY 284 (423)
+||+||||||
T Consensus 516 aNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~il~a~pTAELePl~~g~~~QtDE~dmGmTY 595 (706)
T KOG2303|consen 516 ANVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEKFGLPALQSILDAPPTAELEPLTDGDYSQTDEADMGMTY 595 (706)
T ss_pred CccchHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHhcCchHHHHHhcCCCcccccccccCcccccchhhhCccH
Confidence 8999999999
Q ss_pred hhhhheeeeeeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccccchhhc
Q 014523 285 EELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFL 364 (423)
Q Consensus 285 ~~ld~~~rlr~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~d~r~fl 364 (423)
+||++||||||..+||||+||++|++.|+++++|+||++|||+||.+|++||||||++|||||+|+||||||||||||||
T Consensus 596 ~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~FF~~Y~iNRHKmTvlTPsyHAE~YspeDnRfDlRpFL 675 (706)
T KOG2303|consen 596 AELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRFFSYYSINRHKMTVLTPSYHAENYSPEDNRFDLRPFL 675 (706)
T ss_pred HHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHHHhhheeccccceecccccccccCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchhhHHHHHHhhhCCCCC
Q 014523 365 YNARWPYQFRKIDELVKELDGEKVP 389 (423)
Q Consensus 365 y~~~~~~~f~~id~~~~~~~~~~~~ 389 (423)
||++|||||||||++|+++|....+
T Consensus 676 ynp~w~wqfkkIde~v~~~e~~~~~ 700 (706)
T KOG2303|consen 676 YNPSWPWQFKKIDEQVEQLEANSTK 700 (706)
T ss_pred cCCCCchHHHHHHHHHHHhhhccCc
Confidence 9999999999999999999986654
No 2
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=6.4e-96 Score=796.69 Aligned_cols=387 Identities=80% Similarity=1.283 Sum_probs=353.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeeeeCCceeeeeCCCccCCcceEEEEEecc
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
+|+|||||.+||...|.++|.+++++++++|||||++|+++++++|||+|+|++||+|++++++|++++.+|++++||++
T Consensus 196 ~n~sas~~~~gK~~~R~rai~n~sa~~~~~yvyaN~~Ge~~~~lvf~G~S~I~~~G~ilaea~~F~~~~~~vi~adIDl~ 275 (700)
T PLN02339 196 SNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLYYDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLD 275 (700)
T ss_pred EECCCChhhcCCHHHHHHHHHHHHHHhCCcEEEEcCCccCCCceEEcCceEEeCCCcEeEecCCcccCCceEEEEEEehH
Confidence 58999999999999999999999999999999999999887899999999999999999999999986678999999999
Q ss_pred cccccccCCCchhhhhhccccceeeEEeecccCccccccCCCCCCcCCCCCCHHHHHhcHHHHHHHHHHHhCCCceEEec
Q 014523 81 AVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPL 160 (423)
Q Consensus 81 ~vr~~R~~~~s~~~~a~~~~~~~~v~~~~~l~~~~~~~~~p~~p~~~~~~~~~eei~~~~a~~L~Dylrrsg~~g~~l~L 160 (423)
+++..|.+..++..++.....++++.++|+++........|..|++...+.|+|||+.+++|||||||+++|++|++|||
T Consensus 276 ~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ei~~~~~~~L~d~l~~~g~~g~vlgl 355 (700)
T PLN02339 276 AVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPLKIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPL 355 (700)
T ss_pred HhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 99888877777766554444567778888876321111123445555567789999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHHHHHHH
Q 014523 161 SGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLA 240 (423)
Q Consensus 161 SGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA 240 (423)
|||+|||+||+||++||+++++|++.|+++|++|++|+...+..+.|.+|++||+++++|||||+.+||++|+++|++||
T Consensus 356 SGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~~~ss~~t~~~A~~la 435 (700)
T PLN02339 356 SGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLA 435 (700)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987777999999999999999999999999999999999999
Q ss_pred HHhCCceEEEecHHHHHHHHHHhhhhcCCCCccc----------------------------------------------
Q 014523 241 DEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK---------------------------------------------- 274 (423)
Q Consensus 241 ~~iG~~h~~i~Id~~v~a~~~~~~~~~g~~p~f~---------------------------------------------- 274 (423)
+.||++|++|+|+++|+++.+.+...+|++|+|+
T Consensus 436 ~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~d~~~~NiQAR~R~~~l~~~A~l~~~~~~~~g~~LvlgT 515 (700)
T PLN02339 436 DEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLALQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGS 515 (700)
T ss_pred HHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcccchhhhcccHHHHHHHHHHHHhhcchhhccCCceEEEcC
Confidence 9999999999999999999988877666665332
Q ss_pred ---------------------------------------------------------------------cchhhcCCCch
Q 014523 275 ---------------------------------------------------------------------LDEVDMGMTYE 285 (423)
Q Consensus 275 ---------------------------------------------------------------------tDE~dmGmtY~ 285 (423)
+||+||||||+
T Consensus 516 gN~sE~~~Gy~T~ygd~~~~~~pi~~l~Kt~v~~l~~~~~~~~~~~il~~i~~~~pSaEL~p~~~~~~Q~dE~~lG~~Y~ 595 (700)
T PLN02339 516 ANVDEGLRGYLTKYDCSSADINPIGGISKQDLRSFLRWAATNLGYPSLAEVEAAPPTAELEPIRDDYSQTDEEDMGMTYE 595 (700)
T ss_pred CCcchhheeeeeecCCCCcCccccCCCcHHHHHHHHHHHHHhcCCCcHHHHhcCCCCcccccCCCCCCCCCHHHHCcCHH
Confidence 78999999999
Q ss_pred hhhheeeeeeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccccchhhcc
Q 014523 286 ELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLY 365 (423)
Q Consensus 286 ~ld~~~rlr~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~d~r~fly 365 (423)
+++.|+++|+..++||++||.+|.++|++.|++++|++|||+||++|++|||||+|+|||||+++|||||||||||||||
T Consensus 596 ~l~~~~~l~~~~~~~p~~i~~~~~~~~~~~y~~~~i~~~~~~F~~~f~~nq~Kr~~~~p~~~~~~~s~d~~~~~~~~~~~ 675 (700)
T PLN02339 596 ELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFKYYSINRHKMTTLTPSYHAESYSPDDNRFDLRQFLY 675 (700)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhhccccccCCccccCCCCCCCCccccccccc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHhhhCCC
Q 014523 366 NARWPYQFRKIDELVKELDGEK 387 (423)
Q Consensus 366 ~~~~~~~f~~id~~~~~~~~~~ 387 (423)
|++|||||++||++|++++.+.
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~ 697 (700)
T PLN02339 676 NTRWPYQFRKIDELVEELDGET 697 (700)
T ss_pred CCCCchhHHHHHHHHHHHhhcc
Confidence 9999999999999999998643
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=3.7e-47 Score=414.13 Aligned_cols=322 Identities=20% Similarity=0.231 Sum_probs=251.3
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCC-CceEEcCCeeeeeCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG-GRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~-~rlvfDG~S~I~~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+||||+..||.+.|..+++..+++++++|+|+|+++|++ ++++|+|+|+|+.+|++++++++|+++ .++++++||+
T Consensus 200 l~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~~~~vf~G~S~I~~~G~vla~a~~f~~~-e~l~~adiDl 278 (679)
T PRK02628 200 ANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGESTTDLAWDGQTLIYENGELLAESERFPRE-EQLIVADVDL 278 (679)
T ss_pred EeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCCCCeEEeCeEEEEcCCeEEEecCCCCCC-CcEEEEEEcH
Confidence 58999999999999999999999999999999999877654 789999999999999999999999885 5789999999
Q ss_pred ccccccccCCCchhhhhh---ccccceeeEEeecccCccc-------cccCCCCCCc-CCCCCCHHHHHhcHHHHHHHHH
Q 014523 80 DAVAGFRGSISSFQEQAS---CKTKISSVAVQYSLCQPFN-------LKMSLSGPLK-ITYHSPEEEIAFGPGCWLWDYL 148 (423)
Q Consensus 80 e~vr~~R~~~~s~~~~a~---~~~~~~~v~~~~~l~~~~~-------~~~~p~~p~~-~~~~~~~eei~~~~a~~L~Dyl 148 (423)
+.++..|.....+..... ....+++|. |.++.+.. ....|+.|.+ ..+...+++++.++++||+||+
T Consensus 279 ~~v~~~R~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~l~~~~ 356 (679)
T PRK02628 279 ERLRQERLRNGSFDDNARHRDESAPFRTIP--FALDPPAGDLGLRRPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRL 356 (679)
T ss_pred HHHHHHHhhcCCcccchhcccccCCceEEE--eeccCCcccccccCcCCCCCCCCcChhhhhhhHHHHHHHHHHHHHHHH
Confidence 988777755444332211 112355554 44432111 0112333321 1122346899999999999999
Q ss_pred HHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhh--ccCCCCCCCchhhhcCCeEEEEEeCCC
Q 014523 149 RRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIG--RYANGEFPTESREFAKRIFYTVFMGSE 226 (423)
Q Consensus 149 rrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig--~~~~~~~p~~~~el~~~~v~tv~m~s~ 226 (423)
+++|.+|++||||||+||+++|+++ +++++. ++ .+ .+++|+||+.
T Consensus 357 ~~~~~~~vvvglSGGiDSal~l~l~-------~~a~~~-----------lg~~~~---------------~v~~v~mp~~ 403 (679)
T PRK02628 357 RATGLKKVVIGISGGLDSTHALLVA-------AKAMDR-----------LGLPRK---------------NILAYTMPGF 403 (679)
T ss_pred HHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHh-----------hCCCcc---------------eEEEEECCCC
Confidence 9999999999999999999999998 566432 44 23 3899999999
Q ss_pred CCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhcCC-CC----------------------------------
Q 014523 227 NSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK-RP---------------------------------- 271 (423)
Q Consensus 227 ~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~~g~-~p---------------------------------- 271 (423)
+||+.|+++|++||+.||++|.+|+|++++.++...+...+++ .+
T Consensus 404 ~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn 483 (679)
T PRK02628 404 ATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGD 483 (679)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCc
Confidence 9999999999999999999999999999998876544322110 01
Q ss_pred ----------cc-c-------------------------------------------------------------cchhh
Q 014523 272 ----------RY-K-------------------------------------------------------------LDEVD 279 (423)
Q Consensus 272 ----------~f-~-------------------------------------------------------------tDE~d 279 (423)
+| . +||++
T Consensus 484 ~sE~~~Gy~T~~~GD~~~~~~~~~~l~Kt~v~~l~~~~~~~~~~~~~~~~ip~~i~~~~psaeL~p~~~~g~~~q~ded~ 563 (679)
T PRK02628 484 LSELALGWCTYGVGDHMSHYNVNASVPKTLIQHLIRWVIASGQFDEAVSEVLLDILDTEISPELVPADKEGEIVQSTEDI 563 (679)
T ss_pred hhhHHhCceecCCCCcccccccccCCcHHHHHHHHHHHHhhccccccchhhHHHHhcCCCCccccCCCCCCCCCCcchhc
Confidence 11 0 35666
Q ss_pred cCCCchhhhheeeeeeecCCChHHHHHHHHHhhCC---------------CCCHHHHHHHHHHHHHHHhhhccccccCCC
Q 014523 280 MGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA---------------RLTPSEVAEKVKHFFKYYSINRHKMTVLTP 344 (423)
Q Consensus 280 mGmtY~~ld~~~rlr~~~~~gp~~m~~~l~~~w~~---------------~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~P 344 (423)
|| ||+.||.|++.....+++|.+|+.++.++|++ .|++++|..|++.||+++++|||||.++||
T Consensus 564 lg-pY~~~D~~l~~~~~~~~~~~~i~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~~~~~qfKR~~~p~ 642 (679)
T PRK02628 564 IG-PYELQDFFLYYFLRYGFRPSKIAFLAWHAWKDAERGAWPGFPEDKRPAYDLATIKKWLEVFLRRFFSSQFKRSALPN 642 (679)
T ss_pred cC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccCCCCcchhcccCCHHHHHHHHHHHcchhchHhhCcccCCC
Confidence 76 89999999888888888999999888888876 688889999999999999999999999999
Q ss_pred ccccCC-CC--CCCccccchh
Q 014523 345 SYHAES-YS--PEDNRFDLRQ 362 (423)
Q Consensus 345 s~h~e~-ys--pDdnr~d~r~ 362 (423)
++|+.+ .| | |.|+|.
T Consensus 643 g~kv~~~~~ls~---~~~~r~ 660 (679)
T PRK02628 643 GPKVGSGGSLSP---RGDWRA 660 (679)
T ss_pred CCeeCCCCCCCC---CccccC
Confidence 999888 55 6 666553
No 4
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=1.3e-38 Score=338.97 Aligned_cols=278 Identities=24% Similarity=0.273 Sum_probs=230.9
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+|++..+|.+.|..+++..+.+++++++|||++|++ ++.+|+|.|+|+ ++|+++++++.|+++ ++++++|+
T Consensus 166 l~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G~S~i~dp~G~il~~~~~~~e~---~l~~did~ 241 (540)
T PRK13981 166 LVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDGASFVLNADGELAARLPAFEEQ---IAVVDFDR 241 (540)
T ss_pred EEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeCceEEECCCCCEeeecCCCCCc---EEEEEEee
Confidence 4899999999999999999999999999999999999998 788999999999 899999999999774 35788887
Q ss_pred ccccccccCCCchhhhhhccccceeeEEeecccCccccccCCCCCCcCCCCCCHHHHHhcHHHHHHHHHHHhCCCceEEe
Q 014523 80 DAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLP 159 (423)
Q Consensus 80 e~vr~~R~~~~s~~~~a~~~~~~~~v~~~~~l~~~~~~~~~p~~p~~~~~~~~~eei~~~~a~~L~Dylrrsg~~g~~l~ 159 (423)
+.. ++... . .|+.| ....+++++.++++||+|||+++|.++++|+
T Consensus 242 ~~~--------~~~~~----------------~-------~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~vvg 286 (540)
T PRK13981 242 GED--------GWRPL----------------P-------GPIAP----PPEGEAEDYRALVLGLRDYVRKNGFPGVVLG 286 (540)
T ss_pred cCC--------CcccC----------------C-------CCCCC----CCChHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 521 11100 0 01112 1245789999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHHHHHH
Q 014523 160 LSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKL 239 (423)
Q Consensus 160 LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~A~~L 239 (423)
||||+||+++|+|+ +++ ++.++ +++++||+.++++.+.++|+++
T Consensus 287 lSGGiDSa~~a~la-------~~a--------------~g~~~---------------v~~~~~p~~~~~~~~~~~a~~~ 330 (540)
T PRK13981 287 LSGGIDSALVAAIA-------VDA--------------LGAER---------------VRAVMMPSRYTSEESLDDAAAL 330 (540)
T ss_pred CCCCHHHHHHHHHH-------HHH--------------hCcCc---------------EEEEECCCCCCCHHHHHHHHHH
Confidence 99999999999998 577 56554 9999999999999999999999
Q ss_pred HHHhCCceEEEecHHHHHHHHHHhhhhc-CCCC---------ccc-----------------------------------
Q 014523 240 ADEIGSWHLDVSIDTVVSAFLSLFQTLT-GKRP---------RYK----------------------------------- 274 (423)
Q Consensus 240 A~~iG~~h~~i~Id~~v~a~~~~~~~~~-g~~p---------~f~----------------------------------- 274 (423)
|+.||++|++++|+++++++...+.... +..+ +.|
T Consensus 331 a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~~~Gy~t~~GD~ 410 (540)
T PRK13981 331 AKNLGVRYDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEMAVGYATLYGDM 410 (540)
T ss_pred HHHcCCeEEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHHHcCCeEecCCc
Confidence 9999999999999999999977654322 1111 111
Q ss_pred ------------------------------------------------cchhhcCCCchhhhheeeeeeecCCChHHHHH
Q 014523 275 ------------------------------------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFK 306 (423)
Q Consensus 275 ------------------------------------------------tDE~dmGmtY~~ld~~~rlr~~~~~gp~~m~~ 306 (423)
+||++|| ||++||.|++.....+.+|.+|..
T Consensus 411 ~~~~~pi~~l~K~~v~~la~~~~~~~~~~~vp~~i~~~~psa~l~~~q~de~~l~-~Y~~lD~~l~~~~~~~~~~~~~~~ 489 (540)
T PRK13981 411 AGGFAPIKDVYKTLVYRLCRWRNTVSPGEVIPERIITKPPSAELRPNQTDQDSLP-PYDVLDAILERLVEEEQSVAEIVA 489 (540)
T ss_pred ccCccccCCCCHHHHHHHHHHHHhhcCCCcchHHHhCCCCCCCCCCCCcCccccC-CHHHHHHHHHHHHHcCCCHHHHHH
Confidence 8999998 999999999988888999998864
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccccchhhccCCCCCc
Q 014523 307 NLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPY 371 (423)
Q Consensus 307 ~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~~~~ 371 (423)
. .+++ +.+++++++|.+|||||.++||++|+.+.+++ +-|.||..+.|
T Consensus 490 ~-------~~~~----~~~~~~~~~~~~~~~KR~~~pp~~~~~~~~~~------~~~r~p~~~~~ 537 (540)
T PRK13981 490 A-------GFDR----ATVRRVERLLYIAEYKRRQAAPGVKITRRAFG------RDRRYPITNRF 537 (540)
T ss_pred c-------CCCH----HHHHHHHHHHHhchhccccCCCcceecCCCCC------CCccCccccCc
Confidence 1 3674 46677888999999999999999999999886 44678887776
No 5
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.95 E-value=7.6e-28 Score=233.01 Aligned_cols=158 Identities=32% Similarity=0.436 Sum_probs=134.0
Q ss_pred HHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcC
Q 014523 136 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAK 215 (423)
Q Consensus 136 i~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~ 215 (423)
++..++.||+||++++|.+|++||||||+||+++|+|+ ++| +|.++
T Consensus 1 ~~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La-------~~A--------------lg~~~------------- 46 (242)
T PF02540_consen 1 VIEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALA-------VKA--------------LGPDN------------- 46 (242)
T ss_dssp -HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHH-------HHH--------------HGGGE-------------
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHH-------HHH--------------hhhcc-------------
Confidence 35778999999999999999999999999999999999 688 66665
Q ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhc------CCCCccc---------------
Q 014523 216 RIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT------GKRPRYK--------------- 274 (423)
Q Consensus 216 ~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~~------g~~p~f~--------------- 274 (423)
+++++||+.++++++.++|+.||+.||++|.+|||+++++++...+.... +..++.+
T Consensus 47 --v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lV 124 (242)
T PF02540_consen 47 --VLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNYLV 124 (242)
T ss_dssp --EEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred --ccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccceEE
Confidence 99999999999999999999999999999999999999999877654321 1112211
Q ss_pred -------------------------------------------------------------cchhhcCCCchhhhheeee
Q 014523 275 -------------------------------------------------------------LDEVDMGMTYEELSVYGRL 293 (423)
Q Consensus 275 -------------------------------------------------------------tDE~dmGmtY~~ld~~~rl 293 (423)
+||+|||+||++||.|++
T Consensus 125 lgT~N~sE~~~Gy~T~~GD~~~d~~Pi~~L~K~eV~~la~~l~ip~~ii~k~Psa~L~~gqtDE~elg~~Y~~lD~~l~- 203 (242)
T PF02540_consen 125 LGTGNKSELLLGYFTKYGDGAGDIAPIADLYKTEVRELARYLGIPEEIIEKPPSAGLWPGQTDEDELGFSYEELDAILR- 203 (242)
T ss_dssp BE--CHHHHHHTCSHTTTTTSSSBETTTTS-HHHHHHHHHHTTCGHHHHCS--BHHSSTT-BHHHHHTSTHHHHHHHHH-
T ss_pred ecCCcHHHhhcCcccccCcccccceeeCCcCHHHHHHHHHHHhhHHHHhcCCCCCCCCCCCCCHHHhCCCHHHHHHHHH-
Confidence 899999999999999999
Q ss_pred eeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccc
Q 014523 294 RKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMT 340 (423)
Q Consensus 294 r~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt 340 (423)
....+.+|.++...+. +++ +.|+++.+++.+|+|||.
T Consensus 204 ~~~~~~~~~~~~~~~~------~~~----~~~~~i~~~~~~~~hKr~ 240 (242)
T PF02540_consen 204 LIEEGLSPEEIAEKLG------VDP----EVVERIERLHKRSEHKRR 240 (242)
T ss_dssp HHTSSTTHHHHHHTCT------S-H----HHHHHHHHHHHHTGGGGS
T ss_pred HHHcCCCHHHHHHhcC------CCH----HHHHHHHHHHHhhhhccC
Confidence 7788899998886532 443 567778899999999996
No 6
>PRK13980 NAD synthetase; Provisional
Probab=99.93 E-value=7.1e-26 Score=221.60 Aligned_cols=172 Identities=25% Similarity=0.316 Sum_probs=142.9
Q ss_pred CHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 132 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
+.+++...++.||++|++++|.++++|+||||+||+++|+|+ .++ ++..+
T Consensus 9 ~~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~~~~~--------- 58 (265)
T PRK13980 9 DYEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLA-------VKA--------------LGKEN--------- 58 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHH--------------hCccc---------
Confidence 457888999999999999999999999999999999999999 466 44343
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhh-------------------------
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL------------------------- 266 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~------------------------- 266 (423)
+++++||+..++..+.++|+.+|+.+|++|+.++|+++++++...+...
T Consensus 59 ------v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g 132 (265)
T PRK13980 59 ------VLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANREN 132 (265)
T ss_pred ------eEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcC
Confidence 8999999988888999999999999999999999999988775433210
Q ss_pred -----c--------CCCCccc-------------------------------------------cchhhcCCCchhhhhe
Q 014523 267 -----T--------GKRPRYK-------------------------------------------LDEVDMGMTYEELSVY 290 (423)
Q Consensus 267 -----~--------g~~p~f~-------------------------------------------tDE~dmGmtY~~ld~~ 290 (423)
| |.--+|. +||++|||||++||.|
T Consensus 133 ~lvlgTgn~sE~~~G~~t~~gD~~~~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~L~~~q~De~~lg~~Y~~lD~~ 212 (265)
T PRK13980 133 RLVLGTGNKSELLLGYFTKYGDGAVDLNPIGDLYKTQVRELARHLGVPEDIIEKPPSADLWEGQTDEGELGFSYETIDEI 212 (265)
T ss_pred CEEEcCCCHhHHHhCCccCCCCcccCcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcCCCCCCCCHHHcCCCHHHHHHH
Confidence 0 0000111 8999999999999999
Q ss_pred eeeeeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCC
Q 014523 291 GRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES 350 (423)
Q Consensus 291 ~rlr~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~ 350 (423)
++.....+.+|..|...+. +++ ++|++++++|.+|||||. +||++++.+
T Consensus 213 l~~~~~~~~~~~~i~~~~~------~~~----~~~~~i~~~~~~~~~Kr~-~p~~~~~~~ 261 (265)
T PRK13980 213 LYLLFDKKMSREEILEELG------VPE----DLVDRVRRLVQRSQHKRR-LPPIPKLSG 261 (265)
T ss_pred HHHHHHcCCCHHHHHHHhC------CCH----HHHHHHHHHHHHhhhccc-CCCCcCCCc
Confidence 9988888899999987653 453 478888999999999998 999998743
No 7
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.91 E-value=5.4e-24 Score=206.21 Aligned_cols=161 Identities=42% Similarity=0.597 Sum_probs=133.0
Q ss_pred CHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 132 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
++++++..+++||++|++++|.++++|+||||+||+++|+|+ +++ .+..+
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la-------~~~--------------~~~~~--------- 51 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALA-------VRA--------------LGREN--------- 51 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHH-------HHH--------------hCccc---------
Confidence 467899999999999999999999999999999999999999 466 34233
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhcCCC----------Cccc-------
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKR----------PRYK------- 274 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~~g~~----------p~f~------- 274 (423)
+++++||+..++..+.++|+.+|+.+|++|++++|++++..+...+....+.. ++.+
T Consensus 52 ------v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~ 125 (248)
T cd00553 52 ------VLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYAL 125 (248)
T ss_pred ------EEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHH
Confidence 89999999888889999999999999999999999999988766553211111 1111
Q ss_pred ---------------------------------------------------------------------cchhhcCCCch
Q 014523 275 ---------------------------------------------------------------------LDEVDMGMTYE 285 (423)
Q Consensus 275 ---------------------------------------------------------------------tDE~dmGmtY~ 285 (423)
+||++||+||+
T Consensus 126 A~~~~~~vlgTgn~~E~~~G~~t~~gd~~~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~psa~l~~~q~de~~lg~~Y~ 205 (248)
T cd00553 126 ANKLGGLVLGTGNKSELLLGYFTKYGDGAADINPIGDLYKTQVRELARYLGVPESIIDKPPSAELWPGQTDEDELGMPYE 205 (248)
T ss_pred HHhcCCEEEcCCcHhHHHhCCeeccCCcccCccccCCCcHHHHHHHHHHHCchHHHhcCCCCcccCCCCCCHHHhCCCHH
Confidence 89999999999
Q ss_pred hhhheeeeeeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhcccc
Q 014523 286 ELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKM 339 (423)
Q Consensus 286 ~ld~~~rlr~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKr 339 (423)
++|.|++.....+++|..+... ..+ .++|++++++|.+|||||
T Consensus 206 ~lD~~l~~~~~~~~~~~~~~~~-------~~~----~~~~~~i~~~~~~~~~KR 248 (248)
T cd00553 206 ELDQFLYLRLEGGLGPEEILAP-------GII----EEVVKRVFRLYKKNEHKR 248 (248)
T ss_pred HHHHHHHHHHhcCCCHhhhhcc-------CCC----HHHHHHHHHHHHhccccc
Confidence 9999999888888998554321 233 568899999999999998
No 8
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.91 E-value=9e-24 Score=206.83 Aligned_cols=167 Identities=28% Similarity=0.336 Sum_probs=131.0
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCch
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 210 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~ 210 (423)
.++++.+..++.||++||+++|.+|+|||||||+||++|++|+ ++|++.| ...+
T Consensus 3 ~d~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~~----------~~~~--------- 56 (268)
T COG0171 3 IDLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGKG----------DSKE--------- 56 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhccc----------cchh---------
Confidence 3578899999999999999999999999999999999999999 7884320 0022
Q ss_pred hhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHH-hhhhcC----------CCCccc-----
Q 014523 211 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL-FQTLTG----------KRPRYK----- 274 (423)
Q Consensus 211 ~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~-~~~~~g----------~~p~f~----- 274 (423)
+|.++.||+...++.+.++|+.+++.||+++.+++|.++|.+|... .....+ .++|-|
T Consensus 57 ------~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY 130 (268)
T COG0171 57 ------NVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILY 130 (268)
T ss_pred ------heeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHH
Confidence 3999999987647789999999999999999999999999997432 222212 122222
Q ss_pred --------------------------------------------------------------------------cchhhc
Q 014523 275 --------------------------------------------------------------------------LDEVDM 280 (423)
Q Consensus 275 --------------------------------------------------------------------------tDE~dm 280 (423)
+||++|
T Consensus 131 ~~An~~~~lVlGTgn~sE~~~Gy~TkyGDg~~d~~Pi~~L~KtqV~~La~~l~ipe~I~~k~PTAeL~~~~~~q~DE~~l 210 (268)
T COG0171 131 AIANKLGGLVLGTGNKSELALGYFTKYGDGAVDINPIADLYKTQVYALARHLGIPEEILKKPPTADLWPDEPGQTDEAEL 210 (268)
T ss_pred HHHhhcCCEEEcCCcHHHHhcCceecccCcccChhhhcCCcHHHHHHHHHHcCCCHHHhcCCCCccccCCCCCCCCHHHh
Confidence 789999
Q ss_pred CCCchhhhheeeeeeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccC
Q 014523 281 GMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE 349 (423)
Q Consensus 281 GmtY~~ld~~~rlr~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e 349 (423)
||||+++|.|++.+.+. + ..+++ ..++++.++|..|+|||. +||.++..
T Consensus 211 g~~Y~~lD~~L~~~~~~----------~-----~~i~~----~~~~~i~~~~~~~~~KR~-~p~~~~~~ 259 (268)
T COG0171 211 GMPYEELDDILYGLLEN----------G-----QEISE----ELVKKIERLYKKSEHKRR-LPIGPKIT 259 (268)
T ss_pred CCCHHHHHHHHHHhhhh----------h-----cccCH----HHHHHHHHHHHHHHhhhc-CCCCcCcc
Confidence 99999999999876543 1 12442 356666789999999998 88877665
No 9
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.89 E-value=4.1e-23 Score=202.35 Aligned_cols=103 Identities=23% Similarity=0.248 Sum_probs=81.7
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhh
Q 014523 133 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 212 (423)
Q Consensus 133 ~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~e 212 (423)
.++....+++|||||++++|++|++||||||||||+||+|| ++|++. .+.++.
T Consensus 18 ~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~-------~~A~~~-----------~~~~~~--------- 70 (268)
T PRK00768 18 PEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLA-------QLAVEE-----------LRAETG--------- 70 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHH-----------hccccc---------
Confidence 35566778899999999999999999999999999999998 566432 221100
Q ss_pred hcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhh
Q 014523 213 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQ 264 (423)
Q Consensus 213 l~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~-~h~~i~Id~~v~a~~~~~~ 264 (423)
.....++++.||. +++++.++|+.+|+.||+ .|.+|+|+++++++...+.
T Consensus 71 ~~~~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~ 121 (268)
T PRK00768 71 DDDYQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALE 121 (268)
T ss_pred CcceeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHh
Confidence 0001378999996 345689999999999999 8999999999999987664
No 10
>PTZ00323 NAD+ synthase; Provisional
Probab=99.86 E-value=2.3e-21 Score=192.58 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=84.4
Q ss_pred CHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 132 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
+.+++....+.||++||+++|.+|++||||||+||+++|+|+ +++ ++...
T Consensus 25 ~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa-------~~a--------------lg~~~--------- 74 (294)
T PTZ00323 25 NPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALC-------ARA--------------MRMPN--------- 74 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHH--------------hcccc---------
Confidence 456788889999999999999999999999999999999999 577 33211
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHh
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 263 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~ 263 (423)
.+..+++|++||+ +|++.++++|+.+|+.+|++|++|+|+++++++...+
T Consensus 75 -~~~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i 124 (294)
T PTZ00323 75 -SPIQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLV 124 (294)
T ss_pred -CCceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHH
Confidence 1123589999996 6889999999999999999999999999997775544
No 11
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.82 E-value=1.3e-19 Score=182.27 Aligned_cols=93 Identities=26% Similarity=0.317 Sum_probs=82.5
Q ss_pred CHHHHHhcHHHHHHHHHHH-hCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCch
Q 014523 132 PEEEIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 210 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrr-sg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~ 210 (423)
..+++...+..||.+++++ .++++++|+||||+||+++|+|+ .++ ++..+
T Consensus 11 ~~~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa-------~~a--------------~g~~~-------- 61 (326)
T PRK00876 11 DAAAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALC-------VRA--------------LGKER-------- 61 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHh--------------hCCCc--------
Confidence 4567778899999999999 89999999999999999999999 566 45443
Q ss_pred hhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHH
Q 014523 211 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 260 (423)
Q Consensus 211 ~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~ 260 (423)
+++++||+..++..+.++|+.+|+.+|+.|+.++|+++++++.
T Consensus 62 -------v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~ 104 (326)
T PRK00876 62 -------VYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALG 104 (326)
T ss_pred -------EEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhh
Confidence 8999999877788999999999999999999999999988864
No 12
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.82 E-value=1.3e-19 Score=175.80 Aligned_cols=90 Identities=28% Similarity=0.389 Sum_probs=73.1
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhh
Q 014523 134 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 213 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el 213 (423)
++....+..||++++++.+.++++|+||||+||+++|+|+ .++ .+.+
T Consensus 3 ~~~~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~-------~~~--------------~~~~------------ 49 (250)
T TIGR00552 3 IKYVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC-------VEA--------------LGEQ------------ 49 (250)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH-------HHh--------------hCCc------------
Confidence 3455667889999999999999999999999999999988 455 3322
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHH
Q 014523 214 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAF 259 (423)
Q Consensus 214 ~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~ 259 (423)
.+..+++++..++..+.++|+++|+.+|++|++++|++.+..+
T Consensus 50 ---~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~ 92 (250)
T TIGR00552 50 ---NHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASF 92 (250)
T ss_pred ---eEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHH
Confidence 2444455555567789999999999999999999999988754
No 13
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.40 E-value=5.6e-13 Score=135.93 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=77.9
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCC-----
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS----- 228 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~S----- 228 (423)
++++|+||||+|||++|+|+ .++ |.+ |+++||-....
T Consensus 1 ~kV~vamSGGVDSsvaA~LL-------k~~---------------G~~----------------V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALL-------KEQ---------------GYD----------------VIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHH-------HHC---------------T-E----------------EEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHH-------Hhh---------------ccc----------------ceEEEEEEeccccccC
Confidence 46899999999999999999 444 655 99999987654
Q ss_pred ----CHHHHHHHHHHHHHhCCceEEEecHHHHHHH-HHHhhh--hcCCCC----------ccc---cchh-hcCCCchhh
Q 014523 229 ----SQETRMRAKKLADEIGSWHLDVSIDTVVSAF-LSLFQT--LTGKRP----------RYK---LDEV-DMGMTYEEL 287 (423)
Q Consensus 229 ----S~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~-~~~~~~--~~g~~p----------~f~---tDE~-dmGmtY~~l 287 (423)
+.++.++|+.+|+.||++|+.+|+.+.|... ++.|-+ ..|+|| ||. .-.. .+|.+|.++
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iAT 122 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIAT 122 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE-
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeecc
Confidence 3467899999999999999999999988864 455533 468888 566 2223 499999999
Q ss_pred hheeeeeeecCCChHHHHH
Q 014523 288 SVYGRLRKIFHCGPVSMFK 306 (423)
Q Consensus 288 d~~~rlr~~~~~gp~~m~~ 306 (423)
+||+|+....+.|.+.+.+
T Consensus 123 GHYAri~~~~~~~~~~L~r 141 (356)
T PF03054_consen 123 GHYARIEKDEKNGRYRLLR 141 (356)
T ss_dssp --SEEEEEES-TTEEEEEE
T ss_pred ceeEEEEeeccCCceEEEe
Confidence 9999999986556664443
No 14
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.2e-12 Score=129.47 Aligned_cols=108 Identities=26% Similarity=0.347 Sum_probs=86.0
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC-----
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 227 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~----- 227 (423)
..+++++||||+|||++|+|+ .++ |.+ |.+++|-...
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lL-------k~Q---------------Gye----------------ViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLL-------KEQ---------------GYE----------------VIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEEeeccCCCC
Confidence 468999999999999999999 344 655 9999997554
Q ss_pred --CCHHHHHHHHHHHHHhCCceEEEecHHHHHHH-HHHhhh--hcCCCC----------ccc---cchhhcCCCchhhhh
Q 014523 228 --SSQETRMRAKKLADEIGSWHLDVSIDTVVSAF-LSLFQT--LTGKRP----------RYK---LDEVDMGMTYEELSV 289 (423)
Q Consensus 228 --SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~-~~~~~~--~~g~~p----------~f~---tDE~dmGmtY~~ld~ 289 (423)
++.++..+|+++|++|||+|+.+|+.+.+..- ...|-+ ..|++| +|+ ....++|.+|.+++|
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGH 124 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGH 124 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEee
Confidence 67789999999999999999999999988763 344433 367777 455 222349999999999
Q ss_pred eeeeeeecC
Q 014523 290 YGRLRKIFH 298 (423)
Q Consensus 290 ~~rlr~~~~ 298 (423)
|+|.+...+
T Consensus 125 Yar~~~~~~ 133 (356)
T COG0482 125 YARQREDEG 133 (356)
T ss_pred eEeeecCCc
Confidence 999987654
No 15
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.93 E-value=3.2e-09 Score=108.79 Aligned_cols=103 Identities=26% Similarity=0.366 Sum_probs=76.3
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC--CCHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQE 231 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~--SS~~ 231 (423)
.+++|+||||+||+++|+|+ .+. +.+ +++++|.... .+.+
T Consensus 6 ~kVlValSGGVDSsvaa~LL-------~~~---------------G~~----------------V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLL-------LEA---------------GYE----------------VTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEecCCCCCChH
Confidence 57999999999999999998 232 433 8999997543 3567
Q ss_pred HHHHHHHHHHHhCCceEEEecHHHHHHH-HHHhhh--hcCCCC----------ccc---cchhhcCCCchhhhheeeee
Q 014523 232 TRMRAKKLADEIGSWHLDVSIDTVVSAF-LSLFQT--LTGKRP----------RYK---LDEVDMGMTYEELSVYGRLR 294 (423)
Q Consensus 232 t~~~A~~LA~~iG~~h~~i~Id~~v~a~-~~~~~~--~~g~~p----------~f~---tDE~dmGmtY~~ld~~~rlr 294 (423)
+.++|+++|+.||++|+.+|+++.+..- ...|.. ..|.+| +|. .-.+++|.+|.+++||.+..
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~ 126 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQ 126 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccee
Confidence 7999999999999999999998776543 233322 235555 333 22345999999999999764
No 16
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=6.7e-09 Score=103.04 Aligned_cols=104 Identities=22% Similarity=0.371 Sum_probs=79.5
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC-----
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 227 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~----- 227 (423)
...++|+||||+|||++|.|++ .+ |.. ++++||-...
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~-------~~---------------g~~----------------v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLA-------AR---------------GYN----------------VTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHHH-------hc---------------CCC----------------eeEEeeecccccccc
Confidence 4679999999999999999993 33 543 8999996432
Q ss_pred ----CCHHHHHHHHHHHHHhCCceEEEecHH-----HHHHHHHHhhhhcCCCC----------ccc----cchhhcCCCc
Q 014523 228 ----SSQETRMRAKKLADEIGSWHLDVSIDT-----VVSAFLSLFQTLTGKRP----------RYK----LDEVDMGMTY 284 (423)
Q Consensus 228 ----SS~~t~~~A~~LA~~iG~~h~~i~Id~-----~v~a~~~~~~~~~g~~p----------~f~----tDE~dmGmtY 284 (423)
+-+.+..+|+.+|++|+++++.++... +|+.+++..+ .|+|| ||. -.+++||.+|
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~--~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~ 124 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYE--NGRTPNPDILCNKHIKFGKFFKHAIENLGYDW 124 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHh--cCCCCCCCccccceeeccHHHHHHHHhcCCCe
Confidence 346788899999999999999999865 4444444443 57776 454 2356799999
Q ss_pred hhhhheeeeeee
Q 014523 285 EELSVYGRLRKI 296 (423)
Q Consensus 285 ~~ld~~~rlr~~ 296 (423)
.+++||+|....
T Consensus 125 latGHYAr~~~~ 136 (377)
T KOG2805|consen 125 LATGHYARVVLE 136 (377)
T ss_pred EEeeeeeeeecC
Confidence 999999997543
No 17
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.79 E-value=1.7e-08 Score=103.48 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=74.0
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
.++++|++|||+||+++|+++ +. .+.+ +++++|.... ++
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL--------~~--------------~G~e----------------V~av~~~~~~---~e 43 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLML--------QE--------------QGYE----------------IVGVTMRVWG---DE 43 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHH--------HH--------------cCCc----------------EEEEEecCcc---hh
Confidence 368999999999999999987 23 3433 8999997642 34
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHH-HHHHh-h-hhcCCCC----------ccc---cchhhcCCCchhhhheeeee
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVVSA-FLSLF-Q-TLTGKRP----------RYK---LDEVDMGMTYEELSVYGRLR 294 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~~-~-~~~g~~p----------~f~---tDE~dmGmtY~~ld~~~rlr 294 (423)
.++|+++|+.+|++|+.+|+++.+.. +...+ . ...|.+| ||. .-..++|.+|.+++||++..
T Consensus 44 ~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~ 121 (362)
T PRK14664 44 PQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLE 121 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccc
Confidence 56899999999999999999976653 33322 1 1356665 343 11246899999999999764
No 18
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.76 E-value=2.6e-08 Score=101.84 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=73.1
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCC-------C
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-------N 227 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~-------~ 227 (423)
+++|+||||+||+++|.|+ .+. +.+ +++++|... .
T Consensus 2 kVlValSGGvDSsv~a~lL-------~~~---------------G~~----------------V~~v~~~~~~~~~~~~~ 43 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLL-------KQQ---------------GYE----------------VVGVFMKNWEEDDKNDG 43 (352)
T ss_pred eEEEEEeCCHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEEcccccccccc
Confidence 6899999999999999998 232 433 889999321 1
Q ss_pred ---CCHHHHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhh--hcCCCC----------ccc---cchhhc-CCCchhh
Q 014523 228 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRP----------RYK---LDEVDM-GMTYEEL 287 (423)
Q Consensus 228 ---SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~~~~--~~g~~p----------~f~---tDE~dm-GmtY~~l 287 (423)
.+.++.++|+++|+.||++|+.+++++.+.. +...+.+ ..|.+| ||+ .-..++ |.+|.++
T Consensus 44 ~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IAT 123 (352)
T TIGR00420 44 HGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIAT 123 (352)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3567889999999999999999999876643 2333322 245555 243 112344 9999999
Q ss_pred hheeeee
Q 014523 288 SVYGRLR 294 (423)
Q Consensus 288 d~~~rlr 294 (423)
+||++..
T Consensus 124 GHya~~~ 130 (352)
T TIGR00420 124 GHYARIA 130 (352)
T ss_pred CCcceEe
Confidence 9999653
No 19
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.74 E-value=3.2e-08 Score=96.06 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=63.8
Q ss_pred HHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEe
Q 014523 144 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 223 (423)
Q Consensus 144 L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m 223 (423)
|..|++.-+ +++|++|||+||+++|.++ .++ +| ++ +.+|+.
T Consensus 10 l~~~ik~~~--kv~vAfSGGvDSslLa~la-------~~~--------------lG-~~---------------v~AvTv 50 (269)
T COG1606 10 LKKAIKEKK--KVVVAFSGGVDSSLLAKLA-------KEA--------------LG-DN---------------VVAVTV 50 (269)
T ss_pred HHHHHhhcC--eEEEEecCCccHHHHHHHH-------HHH--------------hc-cc---------------eEEEEE
Confidence 566776654 9999999999999999999 577 66 54 888888
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEEecHHHH
Q 014523 224 GSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 224 ~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v 256 (423)
-+........+.|+.+|++||+.|..|+++.+-
T Consensus 51 ~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 51 DSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred ecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 888889999999999999999999999987654
No 20
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=98.73 E-value=3.7e-08 Score=95.15 Aligned_cols=82 Identities=35% Similarity=0.513 Sum_probs=72.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|++++..++...+..+++..+.+++++++++|++|.+ +..+|.|+|+|+ ++|+++++++.|+ .+++++|+
T Consensus 167 ~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~S~ii~p~G~vl~~~~~~~-----~~~~~id~ 240 (261)
T cd07570 167 LNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGGSFIADNDGELLAEAPRFE-----EDLADVDL 240 (261)
T ss_pred EEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECceEEEcCCCCEEEecCcce-----EEEEEEEE
Confidence 4789999988998888899999999999999999998887 778899999999 7899999999872 35799999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 241 ~~~~~~r~~ 249 (261)
T cd07570 241 DRLRSERRR 249 (261)
T ss_pred ecCcccccc
Confidence 988877754
No 21
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.73 E-value=4.8e-09 Score=115.56 Aligned_cols=74 Identities=23% Similarity=0.232 Sum_probs=67.7
Q ss_pred CCChHHHHH-HHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccccchhhccCCCCCcchhh
Q 014523 298 HCGPVSMFK-NLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRK 375 (423)
Q Consensus 298 ~~gp~~m~~-~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~~~~~f~~ 375 (423)
.+|||+++. .|.+.|...++|++|+.+++++|+.| ||||+++ +|+||++.|++++++..+|+|++ ..|++|||+
T Consensus 563 ~lgpY~~~D~~l~~~~~~~~~~~~i~~~~~~~f~~~--~~~~~~~-~~~~~~~~~~~~~v~~~~~~f~~-~~~~~qfKR 637 (679)
T PRK02628 563 IIGPYELQDFFLYYFLRYGFRPSKIAFLAWHAWKDA--ERGAWPG-FPEDKRPAYDLATIKKWLEVFLR-RFFSSQFKR 637 (679)
T ss_pred ccCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcc--ccccCCC-CcchhcccCCHHHHHHHHHHHcc-hhchHhhCc
Confidence 368999999 55667888899999999999999988 9999988 99999999999999999999999 678999986
No 22
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.72 E-value=7.1e-08 Score=94.08 Aligned_cols=76 Identities=30% Similarity=0.369 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEE
Q 014523 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 222 (423)
Q Consensus 143 ~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~ 222 (423)
-|.++|+. .++++|++|||+||+++++++. +. + .+ +.+++
T Consensus 4 ~l~~~l~~--~~~vlVa~SGGvDSs~ll~la~-------~~---------------g-~~---------------v~av~ 43 (252)
T TIGR00268 4 NLRNFLKE--FKKVLIAYSGGVDSSLLAAVCS-------DA---------------G-TE---------------VLAIT 43 (252)
T ss_pred HHHHHHHh--cCCEEEEecCcHHHHHHHHHHH-------Hh---------------C-CC---------------EEEEE
Confidence 46677776 4779999999999999999882 32 3 22 78888
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHH
Q 014523 223 MGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA 258 (423)
Q Consensus 223 m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a 258 (423)
+.+...+.++.+.|+++|+.+|++|+.+++++....
T Consensus 44 ~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~ 79 (252)
T TIGR00268 44 VVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMINP 79 (252)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHHH
Confidence 887666778899999999999999999999876544
No 23
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.68 E-value=6.4e-08 Score=98.73 Aligned_cols=102 Identities=27% Similarity=0.431 Sum_probs=73.5
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC-------
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 227 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~------- 227 (423)
+++|+||||+||+++|.++ .+ .+.+ +++++|....
T Consensus 2 kVlValSGGvDSsvla~lL-------~~---------------~G~~----------------V~~v~~~~~~~~~~~~~ 43 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALL-------KE---------------QGYE----------------VIGVFMKLWDDDDETGK 43 (346)
T ss_pred eEEEEecCCHHHHHHHHHH-------HH---------------cCCc----------------EEEEEEeCCCccccccc
Confidence 6899999999999999988 22 2432 7888886532
Q ss_pred ---CCHHHHHHHHHHHHHhCCceEEEecHHHHHHH-HHHhhh--hcCCCC----------ccc---cchhhcCCCchhhh
Q 014523 228 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVSAF-LSLFQT--LTGKRP----------RYK---LDEVDMGMTYEELS 288 (423)
Q Consensus 228 ---SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~-~~~~~~--~~g~~p----------~f~---tDE~dmGmtY~~ld 288 (423)
.+.++.++|+++|+.+|++|+.+++.+.+..- ...+.. ..|.+| ||. .-..++|.+|.+++
T Consensus 44 ~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATG 123 (346)
T PRK00143 44 GGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATG 123 (346)
T ss_pred CCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEee
Confidence 25678899999999999999999998766432 222211 245555 333 22346899999999
Q ss_pred heeeee
Q 014523 289 VYGRLR 294 (423)
Q Consensus 289 ~~~rlr 294 (423)
||++..
T Consensus 124 H~a~d~ 129 (346)
T PRK00143 124 HYARIR 129 (346)
T ss_pred eecccc
Confidence 999753
No 24
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=98.64 E-value=4e-08 Score=94.25 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=68.8
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...+ ..+..+++..+.+++++++|||++|.+ ++..|+|+|+|+ ++|+++++.+++ ++ +++++||+
T Consensus 163 ~~p~~~~~~~~--~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~~G~S~i~~p~G~il~~~~~~-e~---~~~~~id~ 235 (254)
T cd07576 163 LVPTALMEPYG--FVARTLVPARAFENQIFVAYANRCGAE-DGLTYVGLSSIAGPDGTVLARAGRG-EA---LLVADLDP 235 (254)
T ss_pred EECCccCCCcc--hhhhhhhHHHHHhCCCEEEEEcccCCC-CCceeeeeeEEECCCCCEeEecCCC-Ce---EEEEEcCH
Confidence 36777777666 456778899999999999999999998 667899999999 899999999987 42 57999999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 236 ~~~~~~R~~ 244 (254)
T cd07576 236 AALAAARRE 244 (254)
T ss_pred HHHHhhhhc
Confidence 999877754
No 25
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.63 E-value=1.5e-07 Score=96.05 Aligned_cols=103 Identities=26% Similarity=0.408 Sum_probs=73.3
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC-------
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 227 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~------- 227 (423)
+++|+||||+||+++|+++ .+ .+.+ +++++|-...
T Consensus 1 kVlValSGGvDSsvla~lL-------~~---------------~g~~----------------v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALL-------KE---------------QGYE----------------VIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHH-------HH---------------cCCc----------------EEEEEEecccccccccC
Confidence 4789999999999999988 22 2433 7888886432
Q ss_pred -CCHHHHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhh--hcCCCC----------ccc---cchhhcCCCchhhhhe
Q 014523 228 -SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRP----------RYK---LDEVDMGMTYEELSVY 290 (423)
Q Consensus 228 -SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~~~~--~~g~~p----------~f~---tDE~dmGmtY~~ld~~ 290 (423)
.+.++.++|+++|+.+|++|+.+++++.+.. +...+.. ..|.+| ||. .-..++|.+|.+++||
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHy 122 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHY 122 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCc
Confidence 3567889999999999999999999875542 2222211 234444 343 2234689999999999
Q ss_pred eeeee
Q 014523 291 GRLRK 295 (423)
Q Consensus 291 ~rlr~ 295 (423)
++...
T Consensus 123 a~d~~ 127 (349)
T cd01998 123 ARIEE 127 (349)
T ss_pred CCeee
Confidence 88644
No 26
>PLN02347 GMP synthetase
Probab=98.59 E-value=2.2e-07 Score=99.90 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhC-CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEE
Q 014523 141 GCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 219 (423)
Q Consensus 141 a~~L~Dylrrsg-~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~ 219 (423)
..++.+.....| .++++|+||||+||+++|+++ .++ +| ++ ++
T Consensus 216 ~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~-------~~a--------------lG-~~---------------v~ 258 (536)
T PLN02347 216 EEQIELIKATVGPDEHVICALSGGVDSTVAATLV-------HKA--------------IG-DR---------------LH 258 (536)
T ss_pred HHHHHHHHHHhccCCeEEEEecCChhHHHHHHHH-------HHH--------------hC-Cc---------------EE
Confidence 345555555666 356999999999999999999 577 56 44 99
Q ss_pred EEEeCCCCCCHHHHHHH-HHHHHHhCCceEEEecHHHH
Q 014523 220 TVFMGSENSSQETRMRA-KKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 220 tv~m~s~~SS~~t~~~A-~~LA~~iG~~h~~i~Id~~v 256 (423)
++++.+...+..+.++| +.+|+.+|++|+.+|+++.|
T Consensus 259 av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~f 296 (536)
T PLN02347 259 CVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERF 296 (536)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 99999765544444555 88999999999999999754
No 27
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.56 E-value=1.3e-07 Score=91.74 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=69.2
Q ss_pred CcccCCccc-----cccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEE
Q 014523 1 MNASGSHHQ-----LRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVV 74 (423)
Q Consensus 1 ~N~SaSh~~-----lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~ 74 (423)
+|+|++++. .++...+..+.+..+.++++++++||+.|.+ +...|.|+|+|+ ++|+++++++.|+++ +++
T Consensus 164 l~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~~~~~G~S~ii~p~G~il~~~~~~~~~---~~~ 239 (269)
T cd07586 164 FIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-DGVYFWGGSRVVDPDGEVVAEAPLFEED---LLV 239 (269)
T ss_pred EEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-CCceEeCCcEEECCCCCEEEecCCcccc---EEE
Confidence 478888774 3344566788999999999999999999999 566788999999 899999999999763 578
Q ss_pred EEEecccccccccC
Q 014523 75 AQVDLDAVAGFRGS 88 (423)
Q Consensus 75 a~vDle~vr~~R~~ 88 (423)
++||++.++..|..
T Consensus 240 ~~id~~~~~~~r~~ 253 (269)
T cd07586 240 AELDRSAIRRARFF 253 (269)
T ss_pred EEecHHHHHHHHhh
Confidence 99999988766643
No 28
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.50 E-value=4.8e-07 Score=91.19 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEE
Q 014523 140 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 219 (423)
Q Consensus 140 ~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~ 219 (423)
....|++++. .++++|++|||+||+++|+++ .++ +| .+ ++
T Consensus 6 ~~~~l~~~v~---~~kVvValSGGVDSsvla~ll-------~~~--------------~G-~~---------------v~ 45 (311)
T TIGR00884 6 AVEEIREQVG---DAKVIIALSGGVDSSVAAVLA-------HRA--------------IG-DR---------------LT 45 (311)
T ss_pred HHHHHHHHhC---CCcEEEEecCChHHHHHHHHH-------HHH--------------hC-CC---------------EE
Confidence 3456667664 388999999999999999998 466 55 33 89
Q ss_pred EEEeCCCCCCHHHHHHHHHH-HHHhCCceEEEecHHHH
Q 014523 220 TVFMGSENSSQETRMRAKKL-ADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 220 tv~m~s~~SS~~t~~~A~~L-A~~iG~~h~~i~Id~~v 256 (423)
++++.+......+.++++++ ++++|++|+.+++++.+
T Consensus 46 av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f 83 (311)
T TIGR00884 46 CVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF 83 (311)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 99998765555666777665 55899999999998754
No 29
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.50 E-value=1.5e-06 Score=90.30 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=73.1
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
.++++|++|||+||+++|.++ .+. +|.+ ++++++-.... ++
T Consensus 2 ~~kVvva~SGGlDSsvla~~l-------~e~--------------lG~e----------------Viavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWL-------KET--------------YGCE----------------VIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHH-------HHh--------------hCCe----------------EEEEEEecCCH--HH
Confidence 468999999999999999988 344 4533 88888876543 68
Q ss_pred HHHHHHHHHHhCC-ceEEEecHHHHH-HHH-HHhhh---hcCCCCc---------cc---cchhhcCCCchhhhheee
Q 014523 233 RMRAKKLADEIGS-WHLDVSIDTVVS-AFL-SLFQT---LTGKRPR---------YK---LDEVDMGMTYEELSVYGR 292 (423)
Q Consensus 233 ~~~A~~LA~~iG~-~h~~i~Id~~v~-a~~-~~~~~---~~g~~p~---------f~---tDE~dmGmtY~~ld~~~r 292 (423)
.+.|+++|+.+|+ .|+++|+.+.+. .+. ..+.. ..|+.|- |+ .-..++|++|..+++.++
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~k 120 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGK 120 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 9999999999998 688889997664 333 22222 2355542 22 223468999999999986
No 30
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.42 E-value=1e-06 Score=94.31 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=64.4
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhh
Q 014523 134 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 213 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el 213 (423)
+.+......+|+++++. ++++|++|||+||+++|+++ .++ ++ .+
T Consensus 199 ~~~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll-------~~~--------------lg-~~----------- 242 (511)
T PRK00074 199 ENFIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLL-------HKA--------------IG-DQ----------- 242 (511)
T ss_pred HHHHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHH-------HHH--------------hC-Cc-----------
Confidence 34555556777777763 78999999999999999999 466 55 33
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHH-HHHHhCCceEEEecHHHH
Q 014523 214 AKRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 214 ~~~~v~tv~m~s~~SS~~t~~~A~~-LA~~iG~~h~~i~Id~~v 256 (423)
++++++.+......+.++|++ +|+.+|++|+.+++++.+
T Consensus 243 ----v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f 282 (511)
T PRK00074 243 ----LTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRF 282 (511)
T ss_pred ----eEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHH
Confidence 899999876544556677775 789999999999998754
No 31
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=98.42 E-value=3.9e-07 Score=88.68 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=68.1
Q ss_pred cccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEecc
Q 014523 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 2 N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
++|+++.... ..+..+++..+.+++++.+++|++|.+++...|.|.|+|+ ++|+++++++.+.++ ++++++|++
T Consensus 161 ~~s~~~~~~~--~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~~~~~~e~---~i~~~idl~ 235 (256)
T PRK10438 161 YVANWPAPRS--LHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIATAEPHQAT---RIDAELSLE 235 (256)
T ss_pred EecCCCCCch--HHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEEcCCCCcE---EEEEEECHH
Confidence 5677776433 3466778999999999999999999986568899999999 899999999988763 579999999
Q ss_pred cccccccC
Q 014523 81 AVAGFRGS 88 (423)
Q Consensus 81 ~vr~~R~~ 88 (423)
.++..|..
T Consensus 236 ~~~~~R~~ 243 (256)
T PRK10438 236 ALQEYREK 243 (256)
T ss_pred HHHHHHHh
Confidence 88776643
No 32
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=98.36 E-value=7.1e-07 Score=87.26 Aligned_cols=83 Identities=24% Similarity=0.310 Sum_probs=68.2
Q ss_pred cccCCccc-------cccHHHHHHHHHHHHHhcCCeEEEEcCCCCCC---CceEEcCCeeee-eCCceeeeeCCCccCCc
Q 014523 2 NASGSHHQ-------LRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---GRLYFDGCSCVV-VNGDMIAQGSQFSLRDV 70 (423)
Q Consensus 2 N~SaSh~~-------lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~---~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv 70 (423)
|+|++.+. ..+...+..+.+..+.++++++++||..|.++ .+..|+|+|+|+ ++|+++++++.|.++
T Consensus 173 ~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~~~~-- 250 (284)
T cd07573 173 YPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFIADPFGEILAQASRDEEE-- 250 (284)
T ss_pred ecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeeceeEEECCCCCeeeccCCCCCc--
Confidence 56665432 24556778888999999999999999999985 279999999999 799999999998763
Q ss_pred ceEEEEEeccccccccc
Q 014523 71 EVVVAQVDLDAVAGFRG 87 (423)
Q Consensus 71 ~v~~a~vDle~vr~~R~ 87 (423)
+++++||++.++..|.
T Consensus 251 -v~~a~id~~~~~~~r~ 266 (284)
T cd07573 251 -ILVAEFDLDEIEEVRR 266 (284)
T ss_pred -EEEEEecHHHHHHHHh
Confidence 5789999998877664
No 33
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=98.35 E-value=8.4e-07 Score=86.61 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=72.8
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+++||++...+ .+.+..+++..+.+++++++++|+.|.+++...|+|+|+|+ ++|+++++...|.+ .++++++|+
T Consensus 171 ~~p~a~~~~~~-~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~v~~~~~~~~e---~~~~~~id~ 246 (274)
T COG0388 171 LVPAAWPAERG-LDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGEVLAEAGEEEE---GVLLADIDL 246 (274)
T ss_pred EEcCCCCCccc-HHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCccEEeecCCCCC---cEEEEEECH
Confidence 36899999888 78888899999999999999999999995558999999999 89999999999944 357999999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 247 ~~~~~~r~ 254 (274)
T COG0388 247 AELAEVRR 254 (274)
T ss_pred HHHHHHHh
Confidence 98876664
No 34
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.35 E-value=1.2e-06 Score=82.00 Aligned_cols=64 Identities=27% Similarity=0.243 Sum_probs=52.0
Q ss_pred eEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHH
Q 014523 156 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 235 (423)
Q Consensus 156 ~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~ 235 (423)
++|++|||+||++++.++ .+. +... ++++++.....+.++.+.
T Consensus 1 vvva~SGG~DS~~ll~ll-------~~~---------------~~~~---------------v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAA-------VDA---------------LGDR---------------VLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHH-------HHH---------------hCCc---------------EEEEEeCCCCCCHHHHHH
Confidence 589999999999999988 343 2212 778888766557789999
Q ss_pred HHHHHHHhCCceEEEecHHHH
Q 014523 236 AKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 236 A~~LA~~iG~~h~~i~Id~~v 256 (423)
|+.+|+.+|++|+.+++++..
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~~ 64 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDELD 64 (202)
T ss_pred HHHHHHHcCCcEEEEeCCccc
Confidence 999999999999999998543
No 35
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.35 E-value=2.2e-06 Score=89.03 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=71.9
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
.++++|++|||+||++++.++ .+. ++.+. ++++++.... ..++
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL-------~e~--------------~g~~~---------------Viav~vd~g~-~~~e 44 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLL-------KEK--------------YGYDE---------------VITVTVDVGQ-PEEE 44 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHH-------HHh--------------cCCCE---------------EEEEEEECCC-ChHH
Confidence 368999999999999999988 344 34322 7888887643 3467
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHH-HHH-HHhhh-h--cCCCC---------ccc---cchhhcCCCchhhhheee
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVVS-AFL-SLFQT-L--TGKRP---------RYK---LDEVDMGMTYEELSVYGR 292 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v~-a~~-~~~~~-~--~g~~p---------~f~---tDE~dmGmtY~~ld~~~r 292 (423)
.+.|+++|+.+|++|+++|+++.+. .++ ..+.. . .+ .| .|+ .-..+.|++|.++++.++
T Consensus 45 ~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~~~~g-Ypl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 45 IKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANALYEG-YPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCccccC-CcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 8899999999999999999996444 443 22221 1 22 22 222 223458999999999886
No 36
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.34 E-value=5.2e-07 Score=87.71 Aligned_cols=84 Identities=21% Similarity=0.144 Sum_probs=66.2
Q ss_pred CcccCCccccccH----HHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEE
Q 014523 1 MNASGSHHQLRKL----DYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVA 75 (423)
Q Consensus 1 ~N~SaSh~~lgK~----~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a 75 (423)
+|+|+.+...++. ..+..+.+..+.+++++.++||++|.+ +...|.|+|+|+ ++|+++++++.+..+ .++++
T Consensus 165 ~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~~~~~~~~~~~~--~~~~~ 241 (268)
T cd07580 165 CVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE-RGQPFIGQSLIVGPDGWPLAGPASGDEE--EILLA 241 (268)
T ss_pred EEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec-cCceEeeeeEEECCCCCeeeecCCCCCC--eEEEE
Confidence 3667766655542 234446677888999999999999999 557899999999 999999999877543 46899
Q ss_pred EEeccccccccc
Q 014523 76 QVDLDAVAGFRG 87 (423)
Q Consensus 76 ~vDle~vr~~R~ 87 (423)
+||++.++..|.
T Consensus 242 ~id~~~~~~~r~ 253 (268)
T cd07580 242 DIDLTAARRKRI 253 (268)
T ss_pred EecHHHHHHhhc
Confidence 999999987774
No 37
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.34 E-value=2.3e-06 Score=76.42 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=50.5
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
.++|+||||+||+++++++ .+. +..+ +.++++.....+.++.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~-------~~~---------------~~~~---------------v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLL-------KEK---------------YGLN---------------PLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHH-------HHH---------------hCCc---------------eEEEEeCCCCCCHHHHH
Confidence 4799999999999999988 343 2212 66677765555678889
Q ss_pred HHHHHHHH-hCCceEEEecHHHHHHHHHH
Q 014523 235 RAKKLADE-IGSWHLDVSIDTVVSAFLSL 262 (423)
Q Consensus 235 ~A~~LA~~-iG~~h~~i~Id~~v~a~~~~ 262 (423)
.|+.+|+. +++.+..+++++........
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~~~~ 74 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQLAR 74 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHHHHH
Confidence 99999999 55556667766655444333
No 38
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.34 E-value=1.2e-06 Score=82.35 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=50.2
Q ss_pred eEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHH
Q 014523 156 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 235 (423)
Q Consensus 156 ~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~ 235 (423)
++|+||||+||+++++++ .+ .+. + ++++++.......++.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~-------~~---------------~g~-~---------------v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIA-------KD---------------EGY-E---------------VHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHH-------HH---------------cCC-c---------------EEEEEEECCCCCHHHHHH
Confidence 479999999999999887 22 232 2 788888766556778899
Q ss_pred HHHHHHHhCCceEEEecHH
Q 014523 236 AKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 236 A~~LA~~iG~~h~~i~Id~ 254 (423)
|+++|+.+|++|+.++++.
T Consensus 43 a~~~a~~lgi~~~~~~~~~ 61 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSL 61 (201)
T ss_pred HHHHHHHhCCCeEEEechh
Confidence 9999999999999999985
No 39
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.33 E-value=9.9e-07 Score=85.20 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=68.4
Q ss_pred CcccCCccccc--cHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEE
Q 014523 1 MNASGSHHQLR--KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQV 77 (423)
Q Consensus 1 ~N~SaSh~~lg--K~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~v 77 (423)
+|+|+++...+ ..+.+..+++..+.+++++.+++|.+|.+ ++.+|+|.|+|+ ++|+++++++.|.++ +++++|
T Consensus 161 l~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~-~~~~~~G~S~i~~p~G~v~~~~~~~~e~---~l~~~i 236 (261)
T cd07585 161 FAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD-GGEVFPGGAMILDPYGRVLAETTSGGDG---MVVADL 236 (261)
T ss_pred EECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC-CCceecceEEEECCCCCEEeccCCCCCc---EEEEEe
Confidence 36777776542 34456667788888999999999999998 588999999999 899999999998663 478999
Q ss_pred eccccccccc
Q 014523 78 DLDAVAGFRG 87 (423)
Q Consensus 78 Dle~vr~~R~ 87 (423)
|++.++..|.
T Consensus 237 d~~~~~~~r~ 246 (261)
T cd07585 237 DLDLINTVRG 246 (261)
T ss_pred cHHHHHHhhc
Confidence 9999887774
No 40
>PRK00919 GMP synthase subunit B; Validated
Probab=98.31 E-value=2.5e-06 Score=85.86 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=64.9
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhh
Q 014523 134 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 213 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el 213 (423)
+.+......-|++.+. .++++|++|||+||+++|.++ .++ +|. +
T Consensus 5 ~~~~~~~~~~l~~~~~---~~kVlVa~SGGVDSsvla~la-------~~~--------------lG~-~----------- 48 (307)
T PRK00919 5 EKFIEEAIEEIREEIG---DGKAIIALSGGVDSSVAAVLA-------HRA--------------IGD-R----------- 48 (307)
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEecCCHHHHHHHHHH-------HHH--------------hCC-e-----------
Confidence 3445555666777764 389999999999999999998 465 553 2
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHH
Q 014523 214 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 214 ~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v 256 (423)
+++++.-+......+.+.|+++|+.+ +.|..+++++.+
T Consensus 49 ----v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f 86 (307)
T PRK00919 49 ----LTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF 86 (307)
T ss_pred ----EEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH
Confidence 88998887666678899999999998 999999998755
No 41
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=98.30 E-value=1.2e-06 Score=86.06 Aligned_cols=83 Identities=24% Similarity=0.256 Sum_probs=66.7
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC--ceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEE
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGG--RLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQV 77 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~--rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~v 77 (423)
+|+|++++..++...+ .+.+..+.+++++++++|++|.+++ ...|.|.|+|+ ++|+++++++.|.++ +++++|
T Consensus 183 ~~ps~~~~~~~~~~~~-~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ii~p~G~il~~~~~~~~~---~l~a~i 258 (287)
T cd07568 183 FNPSATVAGLSEYLWK-LEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYFVDPRGQFVASASRDKDE---LLVAEL 258 (287)
T ss_pred EECCcCCCCCchhhhH-HHHHHHHHHCCcEEEEeccccccCCCccceEeceeEEECCCceEEEecCCCCCe---EEEEEe
Confidence 4788888766554333 3668888899999999999998853 36899999999 999999999998763 579999
Q ss_pred eccccccccc
Q 014523 78 DLDAVAGFRG 87 (423)
Q Consensus 78 Dle~vr~~R~ 87 (423)
|++.++..|.
T Consensus 259 d~~~~~~~R~ 268 (287)
T cd07568 259 DLDLIREVRD 268 (287)
T ss_pred cHHHHHHHHh
Confidence 9998876663
No 42
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.30 E-value=1.9e-06 Score=89.44 Aligned_cols=101 Identities=24% Similarity=0.302 Sum_probs=74.7
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
++++|++|||+||++++.++ +. .|.+ ++++++-+...+.++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l--------~e--------------~G~~----------------Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYL--------QE--------------RGYA----------------VHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHH--------HH--------------cCCc----------------EEEEEEEeCCCCHHHH
Confidence 57999999999999999988 23 2433 8888887766557899
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHHHH-HHHHhh--h--hcCCCC--------ccc---cchhhcCCCchhhhheee
Q 014523 234 MRAKKLADEIGS-WHLDVSIDTVVSA-FLSLFQ--T--LTGKRP--------RYK---LDEVDMGMTYEELSVYGR 292 (423)
Q Consensus 234 ~~A~~LA~~iG~-~h~~i~Id~~v~a-~~~~~~--~--~~g~~p--------~f~---tDE~dmGmtY~~ld~~~r 292 (423)
++|+++|+.+|+ +|+++|+++.+.. ++..+- . ..|.+| +|+ .-..++|.+|..++.-++
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~y~G~yPl~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchhhcCCCCCccccHHHHHHHHHHHHHHCCCCEEEecCcCC
Confidence 999999999999 5999999987764 443222 1 234444 333 123458999999998864
No 43
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=98.29 E-value=1.3e-06 Score=85.12 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEcCCCCC---CCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEeccccccccc
Q 014523 12 KLDYRIRAFISATHSRGGVYMYSNQQGCD---GGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRG 87 (423)
Q Consensus 12 K~~~R~~Li~~~s~k~g~~yvYaN~~G~d---~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~vr~~R~ 87 (423)
.......+++..+.+++++.+++|..|.+ ++..+|.|.|+|+ ++|++++++++|.++ ++++++|++.++..|.
T Consensus 187 ~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G~il~~~~~~~e~---~~~~~id~~~~~~~r~ 263 (279)
T TIGR03381 187 SRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIADHTGELVAEAGRSEEA---VLVATFDLDEIAKQRA 263 (279)
T ss_pred cHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEEECCCCcEeecCCCCCCc---eEEEEeCHHHHHHHHh
Confidence 33455677888999999999999999988 3568899999999 999999999998763 5799999998876664
Q ss_pred C
Q 014523 88 S 88 (423)
Q Consensus 88 ~ 88 (423)
.
T Consensus 264 ~ 264 (279)
T TIGR03381 264 A 264 (279)
T ss_pred c
Confidence 3
No 44
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.28 E-value=2.9e-06 Score=80.35 Aligned_cols=79 Identities=28% Similarity=0.318 Sum_probs=54.3
Q ss_pred hcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCe
Q 014523 138 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRI 217 (423)
Q Consensus 138 ~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~ 217 (423)
..+..-+.+.|+ ....+.+.||||+||+++|+++. +. ...+
T Consensus 4 ~~l~~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~~-------~~---------------~~~~--------------- 44 (255)
T PF00733_consen 4 ELLEEAVARRLR--SDKPIGILLSGGLDSSAIAALAA-------RQ---------------GGPP--------------- 44 (255)
T ss_dssp HHHHHHHHHHCG--CTSEEEEE--SSHHHHHHHHHHH-------HT---------------CCSE---------------
T ss_pred HHHHHHHHHHHh--cCCCEEEECCCChhHHHHHHHHH-------Hh---------------hCCc---------------
Confidence 333444444444 45789999999999999999993 31 2222
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHH
Q 014523 218 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 218 v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
+.++++........+...|+.+|+.+|..|+.+++++.
T Consensus 45 ~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~ 82 (255)
T PF00733_consen 45 IKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPE 82 (255)
T ss_dssp EEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HH
T ss_pred eeEEEEEcCCCcchhHHHHHHHhcccccccceeeechh
Confidence 78888877766666889999999999999999888763
No 45
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.27 E-value=2e-06 Score=83.32 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=51.4
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
++++|.+|||+||+++++++ .+. + +. ++++++-+......+.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a-------~~~---------------~-~~---------------v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQA-------LQQ---------------Y-DE---------------VHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHH-------Hhc---------------C-Ce---------------EEEEEEEeCCCCHHHH
Confidence 57999999999999999887 222 2 22 7777776655556789
Q ss_pred HHHHHHHHHhCCc-eEEEecHHH
Q 014523 234 MRAKKLADEIGSW-HLDVSIDTV 255 (423)
Q Consensus 234 ~~A~~LA~~iG~~-h~~i~Id~~ 255 (423)
+.|+.+|+.+|++ |++|+++..
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~l 66 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTLL 66 (231)
T ss_pred HHHHHHHHHcCCCeEEEEecccc
Confidence 9999999999996 999999854
No 46
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.26 E-value=2.8e-06 Score=85.15 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=53.8
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
+++|++|||+||+++|.++ .++ +|. + ++++++-+......+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll-------~~~--------------lG~-~---------------v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLL-------HKA--------------IGD-R---------------LTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHH-------HHH--------------hCC-c---------------EEEEEecCCCCChHHHH
Confidence 4789999999999999999 465 453 3 88999887655567889
Q ss_pred HHHHHHHHhCC-ceEEEecHHHH
Q 014523 235 RAKKLADEIGS-WHLDVSIDTVV 256 (423)
Q Consensus 235 ~A~~LA~~iG~-~h~~i~Id~~v 256 (423)
+|+++|+++|+ +|+.+++++.+
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e~f 66 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASERF 66 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcHHH
Confidence 99999999997 99999998643
No 47
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.25 E-value=2.8e-06 Score=81.58 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=52.0
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
.++.+|-||||+||+++|+++ .+. + +. ++++..---+-...+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a-------~~~---------------~-~e---------------v~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWA-------KKE---------------G-YE---------------VHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHH-------Hhc---------------C-CE---------------EEEEEeeCCCCcHHH
Confidence 357899999999999999988 343 3 22 666665433334788
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVVS 257 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v~ 257 (423)
.+.|+.+|+.||++|++||++-.-+
T Consensus 44 le~A~~iak~lgv~~~iid~~~~~~ 68 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDLLGE 68 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhHHhh
Confidence 9999999999999999999985544
No 48
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=98.22 E-value=1.3e-06 Score=84.23 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=68.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...++.. ...+.+..+.+++++.+++|+.|.+++..+|.|.|+|+ ++|+++++++.| ++ +++++||+
T Consensus 174 ~~p~~~~~~~~~~~-~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~il~~~~~~-~~---~~~~~id~ 248 (265)
T cd07572 174 TVPAAFTMTTGPAH-WELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGEG-EG---VVVAEIDL 248 (265)
T ss_pred EECCCCCCCcchHH-HHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEEECCCcHHHhhcCCC-Cc---EEEEEeCH
Confidence 46888888777643 55677888999999999999999987778899999999 799999999988 42 57899999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 249 ~~~~~~r~ 256 (265)
T cd07572 249 DRLEEVRR 256 (265)
T ss_pred HHHHHHHH
Confidence 98765554
No 49
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.22 E-value=5.4e-06 Score=75.65 Aligned_cols=70 Identities=21% Similarity=0.149 Sum_probs=51.5
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCC--CCCHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE--NSSQET 232 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~--~SS~~t 232 (423)
+++|++|||+||++++.++. +.... .... -.++++++... ..+.++
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~-------~~~~~-----------~~~~--------------~~~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLK-------KLQRR-----------YPYG--------------FELEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHhh-----------cCCC--------------eEEEEEEEECCCCCCcHHH
Confidence 47999999999999999883 33110 1001 02677777543 246788
Q ss_pred HHHHHHHHHHhCCceEEEecHHHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v 256 (423)
.+.++++|+.+|+.+..+++++.+
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc
Confidence 999999999999999999998665
No 50
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.21 E-value=6.7e-06 Score=83.87 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=50.3
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
-.++||||||+||+++|.++ ++. ++.. ++++++.....++...
T Consensus 60 yD~iV~lSGGkDSs~la~ll-------~~~--------------~gl~----------------~l~vt~~~~~~~e~~~ 102 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVL-------KKK--------------LGLN----------------PLLVTVDPGWNTELGV 102 (343)
T ss_pred CCEEEECCCCHHHHHHHHHH-------HHH--------------hCCc----------------eEEEEECCCCCCHHHH
Confidence 45999999999999999877 344 3422 4555555444567788
Q ss_pred HHHHHHHHHhCCceEEEecHHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
+.|+.+|+.+|+.|+.+.++..
T Consensus 103 ~n~~~~~~~lgvd~~~i~~d~~ 124 (343)
T TIGR03573 103 KNLNNLIKKLGFDLHTITINPE 124 (343)
T ss_pred HHHHHHHHHcCCCeEEEeCCHH
Confidence 8999999999999999988743
No 51
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.16 E-value=3.5e-06 Score=83.49 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=66.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC---ceEEcCCeeee-eCCceeeeeCCC-ccCCcceEEE
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGG---RLYFDGCSCVV-VNGDMIAQGSQF-SLRDVEVVVA 75 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~---rlvfDG~S~I~-~nG~lvaq~~qF-s~~dv~v~~a 75 (423)
+|+|+++...+. ..+..+.+..+.++++..+++|++|-++. ...|+|.|+|+ ++|+++++++.| .+ .++++
T Consensus 194 l~psa~~~~~~~-~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ivdp~G~vla~~~~~~~e---~il~~ 269 (294)
T cd07582 194 LRSSSEVPSVEL-DPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGSMIVDYKGRVLAEAGYGPGS---MVAGA 269 (294)
T ss_pred EEcCCCCCCcch-hhHHHHHHHHHHhcCCEEEEecccccCcccccCceecceeEEECCCCCEEEeCCCCCCC---eEEEE
Confidence 367887765533 34455778888999999999999987653 47899999999 899999999998 44 35799
Q ss_pred EEeccccccccc
Q 014523 76 QVDLDAVAGFRG 87 (423)
Q Consensus 76 ~vDle~vr~~R~ 87 (423)
+||++.++..|.
T Consensus 270 ~id~~~~~~~R~ 281 (294)
T cd07582 270 EIDIEALRRARA 281 (294)
T ss_pred EEcHHHHHHHHH
Confidence 999998876664
No 52
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.15 E-value=3.5e-06 Score=81.25 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=64.8
Q ss_pred cccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEecc
Q 014523 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 2 N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
|+|+.++. +.+.+..+.+..+.+++++.+++|..|.+ +...|.|.|+|+ ++|+++++++.|.++ +++++||++
T Consensus 168 ~ps~~~~~--~~~~~~~~~~~rA~En~~~vv~~n~~g~~-~~~~~~G~S~ii~p~G~il~~~~~~~~~---~~~~~id~~ 241 (258)
T cd07584 168 CPSAWREQ--DADIWDINLPARALENTVFVAAVNRVGNE-GDLVLFGKSKILNPRGQVLAEASEEAEE---ILYAEIDLD 241 (258)
T ss_pred ECCccCCC--CchHHHHHHHHHHHhCCcEEEEECccccC-CCceecceeEEECCCCceeeecCCCCCc---EEEEEeCHH
Confidence 56665543 33445567788899999999999999998 667899999999 999999999998763 579999999
Q ss_pred ccccccc
Q 014523 81 AVAGFRG 87 (423)
Q Consensus 81 ~vr~~R~ 87 (423)
.++..|.
T Consensus 242 ~~~~~r~ 248 (258)
T cd07584 242 AIADYRM 248 (258)
T ss_pred HHHHHHh
Confidence 8876664
No 53
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=98.14 E-value=4.1e-06 Score=79.71 Aligned_cols=80 Identities=23% Similarity=0.285 Sum_probs=67.5
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|++++.. .+.+..+++..+.++++++++||..|.+ ++.+|+|.|+|+ +.|+++++.+.| + + +++++||+
T Consensus 164 ~~ps~~~~~~--~~~~~~~~~~~A~e~~~~vv~~n~~G~~-~~~~~~G~S~i~~p~G~~~~~~~~~-~-~--~~~~~id~ 236 (253)
T cd07197 164 LVPAAWPTAR--REHWELLLRARAIENGVYVVAANRVGEE-GGLEFAGGSMIVDPDGEVLAEASEE-E-G--ILVAELDL 236 (253)
T ss_pred EECCcCCCcc--hHHHHHHHHHHHHHhCCeEEEecCCCCC-CCccccceeEEECCCCceeeecCCC-C-c--EEEEEeCH
Confidence 3677776654 6778889999999999999999999998 689999999999 679999999998 4 3 57899999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 237 ~~~~~~r~ 244 (253)
T cd07197 237 DELREARK 244 (253)
T ss_pred HHHHHHHh
Confidence 98875553
No 54
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=98.13 E-value=4.3e-06 Score=83.14 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=67.2
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+++|+++.... +....+.+..+.+++++.+++|+.|.+ +...|.|.|+|+ ++|+++++++.+.++ +++++||+
T Consensus 174 l~ps~~~~~~~--~~w~~~~~aRA~En~~~vv~aN~~G~~-~~~~~~G~S~ivdP~G~ila~~~~~~e~---i~~adid~ 247 (291)
T cd07565 174 IRIQGYMYPAK--DQWIITNKANAWCNLMYTASVNLAGFD-GVFSYFGESMIVNFDGRTLGEGGREPDE---IVTAELSP 247 (291)
T ss_pred EECCcCCCCcc--hHHHHHHHHHHHhcCcEEEEecccccC-CCceeeeeeEEECCCCCEEEeCCCCCCc---EEEEEEcH
Confidence 36777776543 456678899999999999999999998 557789999999 999999999987653 57999999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 248 ~~~~~~R~~ 256 (291)
T cd07565 248 SLVRDARKN 256 (291)
T ss_pred HHHHHHHhc
Confidence 988776654
No 55
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.12 E-value=8.2e-06 Score=84.73 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=53.6
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCC-CCCCHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS-ENSSQETR 233 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s-~~SS~~t~ 233 (423)
.++++||||+||+++|.++. +. |.. +.++++.+ ..+++.+.
T Consensus 178 kvvvllSGGiDS~vaa~l~~-------k~---------------G~~----------------v~av~~~~~~~~~~~~~ 219 (394)
T PRK01565 178 KALLLLSGGIDSPVAGYLAM-------KR---------------GVE----------------IEAVHFHSPPYTSERAK 219 (394)
T ss_pred CEEEEECCChhHHHHHHHHH-------HC---------------CCE----------------EEEEEEeCCCCCcHHHH
Confidence 47777999999999999882 32 322 77777754 35667788
Q ss_pred HHHHHHHHHhC-----CceEEEecHHHHHHHHH
Q 014523 234 MRAKKLADEIG-----SWHLDVSIDTVVSAFLS 261 (423)
Q Consensus 234 ~~A~~LA~~iG-----~~h~~i~Id~~v~a~~~ 261 (423)
+.|+++|+.|+ ++|+++|+++....+..
T Consensus 220 ~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~~ 252 (394)
T PRK01565 220 EKVIDLARILAKYGGRIKLHVVPFTEIQEEIKK 252 (394)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECHHHHHHHhh
Confidence 99999999995 99999999998765543
No 56
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.11 E-value=7.1e-06 Score=78.27 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=45.9
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
+++|.+|||+||+++|+++ .+. +.+ +++++.-.......+.+
T Consensus 1 Kavvl~SGG~DSt~~l~~~-------~~~---------------~~~----------------v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWA-------KKE---------------GYE----------------VYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHH----------------SE----------------EEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEECCCCCHHHHH
Confidence 4789999999999999988 333 322 55555544444668899
Q ss_pred HHHHHHHHhCC-ceEEEecHHHH
Q 014523 235 RAKKLADEIGS-WHLDVSIDTVV 256 (423)
Q Consensus 235 ~A~~LA~~iG~-~h~~i~Id~~v 256 (423)
.|+++|+.+|+ +|+.|+++.+-
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~ 65 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLK 65 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHH
T ss_pred HHHHHHHHhCCCCCEEeeHHHHH
Confidence 99999999999 99999998544
No 57
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.09 E-value=8e-06 Score=79.02 Aligned_cols=64 Identities=27% Similarity=0.328 Sum_probs=46.4
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..+.+.||||+||+++|+++. +. +..+ -...++..+. ...++.
T Consensus 16 ~~v~~~LSGGlDSs~va~~~~-------~~---------------~~~~-------------~~~~~~~~~~--~~~~e~ 58 (269)
T cd01991 16 VPVGVLLSGGLDSSLVAALAA-------RL---------------LPEP-------------VKTFSIGFGF--EGSDER 58 (269)
T ss_pred CceEEeecccHHHHHHHHHHH-------Hh---------------hCCC-------------CceEEEeeCC--CCCChH
Confidence 568899999999999999882 33 2221 0134444443 333568
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~ 254 (423)
..|+.+|+.+|+.|+.++++.
T Consensus 59 ~~a~~~a~~l~~~~~~~~~~~ 79 (269)
T cd01991 59 EYARRVAEHLGTEHHEVEFTP 79 (269)
T ss_pred HHHHHHHHHhCCcceEEEcCH
Confidence 999999999999999998875
No 58
>PLN02747 N-carbamolyputrescine amidase
Probab=98.08 E-value=6.6e-06 Score=81.40 Aligned_cols=74 Identities=24% Similarity=0.337 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEcCCCCC------C-CceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEecccc
Q 014523 11 RKLDYRIRAFISATHSRGGVYMYSNQQGCD------G-GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAV 82 (423)
Q Consensus 11 gK~~~R~~Li~~~s~k~g~~yvYaN~~G~d------~-~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~v 82 (423)
++...+..+++..+.+++++++++|++|.+ | .+.+|.|.|+|+ ++|+++++++.+.++ +++++||++.+
T Consensus 192 ~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~vl~~~~~~~e~---~~~adid~~~~ 268 (296)
T PLN02747 192 DSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGGSFIAGPTGEIVAEADDKAEA---VLVAEFDLDQI 268 (296)
T ss_pred chHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEeeeeEEECCCCCEeecCCCCCCc---EEEEEEcHHHH
Confidence 455677788899999999999999999964 2 368999999999 999999999988763 57999999988
Q ss_pred ccccc
Q 014523 83 AGFRG 87 (423)
Q Consensus 83 r~~R~ 87 (423)
+..|.
T Consensus 269 ~~~r~ 273 (296)
T PLN02747 269 KSKRA 273 (296)
T ss_pred HHHHH
Confidence 76664
No 59
>PLN00202 beta-ureidopropionase
Probab=98.06 E-value=5.8e-06 Score=86.24 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=67.5
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCC---------------CceEEcCCeeee-eCCceeeeeCC
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQ 64 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~---------------~rlvfDG~S~I~-~nG~lvaq~~q 64 (423)
+|+|+++...++... ..+++..+..+++..+++|++|.+. +...|.|+|+|+ ++|+++++...
T Consensus 267 l~Psa~~~~~~~~~w-~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~ 345 (405)
T PLN00202 267 FNPSATVGDLSEPMW-PIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSR 345 (405)
T ss_pred EECCCCCCccCHHHH-HHHHHHHHHhcCCEEEEeccccccccccccccccccccccccccccceeEEEcCCCCEeccCCC
Confidence 478898877666443 4778899999999999999999853 125799999999 89999999887
Q ss_pred CccCCcceEEEEEecccccccccC
Q 014523 65 FSLRDVEVVVAQVDLDAVAGFRGS 88 (423)
Q Consensus 65 Fs~~dv~v~~a~vDle~vr~~R~~ 88 (423)
+.++ +++++||++.++..|..
T Consensus 346 ~~E~---llvadIDl~~v~~~R~~ 366 (405)
T PLN00202 346 YKDG---LLISDMDLNLCRQLKDK 366 (405)
T ss_pred CCCc---EEEEEeCHHHHHHHHHh
Confidence 7663 57999999988766643
No 60
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=98.01 E-value=9.5e-06 Score=82.95 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=65.8
Q ss_pred cccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEecc
Q 014523 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 2 N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
++|+.+. .+.+.+..+.+..+..+++..+++|++|.+ +...|.|+|+|+ .+|+++++++.+.++ +++++||++
T Consensus 188 ~psa~~~--~~~~~~~~~~rarA~eN~~yVv~aN~~G~~-~~~~~~G~S~Ivdp~G~vla~~~~~~e~---ii~adld~~ 261 (345)
T PRK13286 188 RCQGYMY--PAKEQQVLVAKAMAWANNCYVAVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEEMG---IQYAQLSVS 261 (345)
T ss_pred EccccCC--CchHHHHHHHHHHHHHCCCEEEEEeccccc-CCceeeeeEEEECCCCcEEEecCCCCCe---EEEEEEeHH
Confidence 3455333 344567778889999999999999999998 557899999999 899999999888653 468999999
Q ss_pred cccccccC
Q 014523 81 AVAGFRGS 88 (423)
Q Consensus 81 ~vr~~R~~ 88 (423)
.++..|..
T Consensus 262 ~i~~~R~~ 269 (345)
T PRK13286 262 QIRDARRN 269 (345)
T ss_pred HHHHHHHh
Confidence 99877754
No 61
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.00 E-value=2e-05 Score=72.74 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=49.7
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC--CCHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQET 232 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~--SS~~t 232 (423)
.++|++|||.||++++.++ .+.... .+ .+ +.++++.... .+.+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll-------~~~~~~-----------~~-~~---------------v~~v~vd~g~~~~~~~~ 46 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLL-------LKLQPK-----------LK-IR---------------LIAAHVDHGLRPESDEE 46 (189)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHH-----------cC-CC---------------EEEEEeCCCCChhHHHH
Confidence 4799999999999999988 343111 12 12 6777776443 34678
Q ss_pred HHHHHHHHHHhCCceEEEecHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
.+.++.+|+.+|++++.++++.
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~ 68 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDV 68 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecc
Confidence 8999999999999999999864
No 62
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.00 E-value=2.2e-05 Score=85.91 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCC--CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 208 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~--~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~ 208 (423)
.+.+|....+..-|.+-+++.-. ..+.+.||||+||+++|+++. +. ...+
T Consensus 234 ~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~-------~~---------------~~~~------ 285 (628)
T TIGR03108 234 LSEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMA-------GL---------------SDTP------ 285 (628)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHH-------Hh---------------cCCC------
Confidence 35566666666667776654322 346677999999999998872 22 2222
Q ss_pred chhhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHH
Q 014523 209 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 209 ~~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
+.|+.++...+...+...|+.+|+.+|..|+++.+++.
T Consensus 286 ---------i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~ 323 (628)
T TIGR03108 286 ---------VNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPD 323 (628)
T ss_pred ---------CcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHH
Confidence 55565555444446788999999999999999988753
No 63
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=97.99 E-value=4.6e-05 Score=80.43 Aligned_cols=87 Identities=32% Similarity=0.319 Sum_probs=58.1
Q ss_pred CHHHHHhcHHHHHHHHHHHhC--CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCc
Q 014523 132 PEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 209 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg--~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~ 209 (423)
++++....+...|.+-+++.- ...+.+.||||+||+++|+++. +. ....+
T Consensus 230 ~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~-------~~--------------~~~~~------- 281 (467)
T TIGR01536 230 SEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIAR-------RE--------------APRGP------- 281 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHH-------Hh--------------cCCCC-------
Confidence 455666666666666665542 2457788999999999999883 32 11011
Q ss_pred hhhhcCCeEEEEEeCCCC-CCHHHHHHHHHHHHHhCCceEEEecHH
Q 014523 210 SREFAKRIFYTVFMGSEN-SSQETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 210 ~~el~~~~v~tv~m~s~~-SS~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
+.|+.....+ ..-.+...|+++|+.+|+.|+.+.+++
T Consensus 282 --------~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 282 --------VHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred --------ceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCH
Confidence 4444444332 223456799999999999999999954
No 64
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=97.98 E-value=8.3e-06 Score=83.85 Aligned_cols=83 Identities=19% Similarity=0.111 Sum_probs=66.3
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCC---------------CceEEcCCeeee-eCCceeeeeCC
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQ 64 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~---------------~rlvfDG~S~I~-~nG~lvaq~~q 64 (423)
+|+|+++...++. ....+++..+..+++..+++|++|-+. +...|.|+|+|+ ++|+++++++.
T Consensus 246 l~Psa~~~~~~~~-~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~ 324 (363)
T cd07587 246 FNPSATVGALSEP-MWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSR 324 (363)
T ss_pred EECCCcCCCCchH-HHHHHHHHHHHhcCcEEEEeccccccccccccccccccccccccccccceeEEECCCCCCccCCCC
Confidence 4788988776654 334778899999999999999999651 124689999999 89999999887
Q ss_pred CccCCcceEEEEEeccccccccc
Q 014523 65 FSLRDVEVVVAQVDLDAVAGFRG 87 (423)
Q Consensus 65 Fs~~dv~v~~a~vDle~vr~~R~ 87 (423)
+.++ +++++||++.++..|.
T Consensus 325 ~~E~---ll~adiDl~~i~~~R~ 344 (363)
T cd07587 325 TRDG---LLVAELDLNLCRQVKD 344 (363)
T ss_pred CCCc---EEEEEecHHHHHHHHh
Confidence 7764 5799999998876553
No 65
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=97.97 E-value=1.2e-05 Score=77.57 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=62.6
Q ss_pred cccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEecc
Q 014523 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 2 N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
++|+++.... .....+....+.+++++.+++|++|.++++..|.|.|+|+ ++|+++++.+.+ + .+++++||++
T Consensus 160 ~~s~~~~~~~--~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~~l~~~~~~-e---~~i~~~id~~ 233 (252)
T cd07575 160 YVANWPAPRR--AAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYSGDSAVIDPLGEPLAEAEED-E---GVLTATLDKE 233 (252)
T ss_pred EeCCCCCCch--HHHHHHhHHHHhhccceEEEecccccCCCCceEcceeEEECCCCceeeEcCCC-c---eEEEEEECHH
Confidence 4555554322 2334566778999999999999999997578999999999 899999999887 4 2579999999
Q ss_pred ccccccc
Q 014523 81 AVAGFRG 87 (423)
Q Consensus 81 ~vr~~R~ 87 (423)
.++..|.
T Consensus 234 ~~~~~r~ 240 (252)
T cd07575 234 ALQEFRE 240 (252)
T ss_pred HHHHHHh
Confidence 8875553
No 66
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=97.96 E-value=1.3e-05 Score=77.11 Aligned_cols=79 Identities=18% Similarity=0.027 Sum_probs=67.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...++.+.+..+++..+.+++++.+++|++|. +|.|.|+|+ ++|+++++.+.+ + .++++++|+
T Consensus 168 l~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~~~G~S~i~~p~G~i~~~~~~~-~---~~l~~~id~ 238 (255)
T cd07581 168 VVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----RGIGRSMVVDPLGVVLADLGER-E---GLLVADIDP 238 (255)
T ss_pred EECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----CcccceEEECCCcceeeecCCC-C---cEEEEEeCH
Confidence 367887777777788888999999999999999999997 699999999 789999999864 3 367999999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
++++..|.+
T Consensus 239 ~~~~~~r~~ 247 (255)
T cd07581 239 ERVEEAREA 247 (255)
T ss_pred HHHHHHHHh
Confidence 998877654
No 67
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=97.95 E-value=1.3e-05 Score=76.99 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=62.8
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++.. .......+++..+..++++.+++|.+|.+ +...|.|.|+|+ ++|+++++++. .+ .++++++|+
T Consensus 164 ~~ps~~~~~--~~~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~il~~~~~-~~---~~~~~~i~l 236 (253)
T cd07583 164 FVPAEWPAA--RIEHWRTLLRARAIENQAFVVACNRVGTD-GGNEFGGHSMVIDPWGEVLAEAGE-EE---EILTAEIDL 236 (253)
T ss_pred EECCCCCCC--chHHHHHHHHHHHHHhCCEEEEEcCcccC-CCceecceeEEECCCchhheecCC-Cc---eEEEEEecH
Confidence 356776543 22344557788899999999999999998 556789999998 99999999987 33 468999999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 237 ~~~~~~r~ 244 (253)
T cd07583 237 EEVAEVRK 244 (253)
T ss_pred HHHHHHHH
Confidence 98876654
No 68
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=97.93 E-value=1.4e-05 Score=78.03 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=64.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCC---CceEEcCCeeee-e------CCceeeeeCCCccCCc
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---GRLYFDGCSCVV-V------NGDMIAQGSQFSLRDV 70 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~---~rlvfDG~S~I~-~------nG~lvaq~~qFs~~dv 70 (423)
+|+|+.+...++...+ .+.+..+.+++++++++|++|.++ +...|.|+|+|+ + +|.++++++.+.++
T Consensus 174 ~~ps~~~~~~~~~~~~-~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~P~~~~~~~g~~l~~~~~~~e~-- 250 (280)
T cd07574 174 LVPSCTDTRAGYWRVR-IGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAAVYTPCDFGFPEDGILAEGEPNTEG-- 250 (280)
T ss_pred EECCcCCccccHHHHH-HHHHHHHHhhCceEEEeCCCCCCCCccccccccccceeecCCCCCCCCCCeEeecCCCCCc--
Confidence 3667766555554333 346788889999999999999885 245788999999 5 38999999988653
Q ss_pred ceEEEEEecccccccccC
Q 014523 71 EVVVAQVDLDAVAGFRGS 88 (423)
Q Consensus 71 ~v~~a~vDle~vr~~R~~ 88 (423)
+++++||++.++..|..
T Consensus 251 -~~~a~iD~~~~~~~R~~ 267 (280)
T cd07574 251 -WLIADLDLEALRRLREE 267 (280)
T ss_pred -eEEEecCHHHHHHHhhc
Confidence 57899999999877753
No 69
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=97.92 E-value=2.1e-05 Score=78.19 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEeccccccccc
Q 014523 16 RIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRG 87 (423)
Q Consensus 16 R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~vr~~R~ 87 (423)
+.-+.+..+.+++++.+++|++|.+ +...|.|.|+|+ ++|+++++++.|.++ +++++||++.++..|.
T Consensus 215 ~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vla~~~~~~e~---~~~a~id~~~~~~~r~ 283 (302)
T cd07569 215 NLLSMQAGAYQNGTWVVAAAKAGME-DGCDLIGGSCIVAPTGEIVAQATTLEDE---VIVADCDLDLCREGRE 283 (302)
T ss_pred HHHHHhhhhhcccceEEEeeccccC-CCceEecceEEECCCCCEEEecCCCCCc---EEEEEecHHHhhhccc
Confidence 3444566788899999999999998 557788999999 999999999998763 5799999998876664
No 70
>PRK13287 amiF formamidase; Provisional
Probab=97.88 E-value=2.3e-05 Score=79.60 Aligned_cols=82 Identities=27% Similarity=0.275 Sum_probs=65.3
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|++++..+. ...-+.+..+..+++..+++|++|.+ +...|.|+|+|+ .+|+++++++.+.+ .+++++||+
T Consensus 186 l~~s~~~~~~~~--~w~~~~~arA~en~~~vv~an~~G~~-~~~~~~G~S~Iidp~G~vl~~~~~~~~---~ii~aeid~ 259 (333)
T PRK13287 186 IRISGYSTQVRE--QWILTNRSNAWQNLMYTASVNLAGYD-GVFYYFGEGQVCNFDGTTLVQGHRNPW---EIVTAEVRP 259 (333)
T ss_pred EECCccCCcchh--HHHHHHHHHHHhCCcEEEEEeccccC-CCeeeeeeeEEECCCCcEEEeCCCCCC---eEEEEEEeH
Confidence 467888876432 22334566788899999999999999 557788999999 99999999998765 357999999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 260 ~~~~~~R~~ 268 (333)
T PRK13287 260 DLADEARLG 268 (333)
T ss_pred HHHHHHHHh
Confidence 999877743
No 71
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.87 E-value=2.4e-05 Score=73.81 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=43.9
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCC------
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS------ 228 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~S------ 228 (423)
++++++|||.||++++.++ .+. |.+ +.++++-....
T Consensus 1 kv~v~~SGGkDS~~al~~a-------~~~---------------G~~----------------v~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRA-------LEE---------------GHE----------------VVALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHH-------HHc---------------CCE----------------EEEEEEEecCCCCcccc
Confidence 4789999999999999988 232 432 44444332211
Q ss_pred CHHHHHHHHHHHHHhCCceEEEecHH
Q 014523 229 SQETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 229 S~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
.....+.++.+|+.+|++|+.++++.
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~~~ 68 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEISG 68 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 12367899999999999999998743
No 72
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.87 E-value=4.8e-05 Score=67.49 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=53.8
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
.++|++|||.||++++.|+ .++ .... ..+..+++-+....+++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~-------~~~---------------~~~~-------------~~~~~v~~dtg~~~~~~~~ 45 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLA-------LKA---------------LPEL-------------KPVPVIFLDTGYEFPETYE 45 (173)
T ss_pred CeEEEecCChHHHHHHHHH-------HHh---------------cccc-------------cCceEEEeCCCCCCHHHHH
Confidence 3789999999999999998 344 1110 0167777777766789999
Q ss_pred HHHHHHHHhCCceEEEecHHHHHH
Q 014523 235 RAKKLADEIGSWHLDVSIDTVVSA 258 (423)
Q Consensus 235 ~A~~LA~~iG~~h~~i~Id~~v~a 258 (423)
.++.+++.+|+++..+..+.....
T Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~~~ 69 (173)
T cd01713 46 FVDRVAERYGLPLVVVRPPDSPAE 69 (173)
T ss_pred HHHHHHHHhCCCeEEECCCccHHH
Confidence 999999999999999988765543
No 73
>PLN00200 argininosuccinate synthase; Provisional
Probab=97.81 E-value=5.7e-05 Score=78.79 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=68.2
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
++++|++|||+||++++.++ .+. ++.+ ++++++-... ..++.
T Consensus 6 ~kVvva~SGGlDSsvla~~L-------~e~--------------~G~e----------------Viav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWL-------REN--------------YGCE----------------VVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHH-------HHh--------------hCCe----------------EEEEEEECCC-ChHHH
Confidence 58999999999999999888 343 3433 7888876554 34688
Q ss_pred HHHHHHHHHhCCce-EEEecHHHHH-HHH-HHh-hhhc--CC--------CC-ccc---cchhhcCCCchhhhheee
Q 014523 234 MRAKKLADEIGSWH-LDVSIDTVVS-AFL-SLF-QTLT--GK--------RP-RYK---LDEVDMGMTYEELSVYGR 292 (423)
Q Consensus 234 ~~A~~LA~~iG~~h-~~i~Id~~v~-a~~-~~~-~~~~--g~--------~p-~f~---tDE~dmGmtY~~ld~~~r 292 (423)
+.|+++|+.+|++| +++|+.+.|. .+. ..+ .... +. .| .|+ .-..++|+++..+++.++
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgk 124 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGK 124 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCC
Confidence 99999999999975 7778776653 221 111 1110 10 01 122 123468999999999986
No 74
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.81 E-value=0.00018 Score=78.07 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=60.3
Q ss_pred HHHHHhcHHHHHHHHHHHhC--CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhh--ccCCCCCCC
Q 014523 133 EEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIG--RYANGEFPT 208 (423)
Q Consensus 133 ~eei~~~~a~~L~Dylrrsg--~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig--~~~~~~~p~ 208 (423)
.++....+-.-|.+=+++.= -..+-+-||||+|||++|+|+. +...+. +. .....|.|
T Consensus 205 ~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~-------~~~~~~----------~~~~~~~~~~~~- 266 (554)
T PRK09431 205 NVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAK-------KYAARR----------IEDDERSEAWWP- 266 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHH-------Hhhccc----------ccccccccccCC-
Confidence 34444444444444444322 2356788999999999999983 331100 00 00000100
Q ss_pred chhhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecH--HHHHHHHHH
Q 014523 209 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSL 262 (423)
Q Consensus 209 ~~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id--~~v~a~~~~ 262 (423)
.++|+..+..++ .+...|+.+|+.||..|+++.++ +..+.+.++
T Consensus 267 --------~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~v 312 (554)
T PRK09431 267 --------QLHSFAVGLEGS--PDLKAAREVADHLGTVHHEIHFTVQEGLDALRDV 312 (554)
T ss_pred --------CceEEEEeCCCC--ChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHH
Confidence 167777777654 37889999999999999999874 444444333
No 75
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=97.80 E-value=4.3e-05 Score=73.92 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCC---CceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEecccccccc
Q 014523 18 RAFISATHSRGGVYMYSNQQGCDG---GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFR 86 (423)
Q Consensus 18 ~Li~~~s~k~g~~yvYaN~~G~d~---~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~vr~~R 86 (423)
.+.+..+.+++++.+++|++|.+. +...|.|.|+|+ ++|+++++++.|.++ ++++++|++.++..|
T Consensus 174 ~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~~e~---~~~~~id~~~~~~~~ 243 (259)
T cd07577 174 KAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQITSPKGEVLARAPEDGEE---VLVAEIDPRLARDKR 243 (259)
T ss_pred hhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEECCCCCEEeecCCCCCc---EEEEEEchHHhhccc
Confidence 356788889999999999999873 568899999999 899999999988763 468899998776544
No 76
>PLN02798 nitrilase
Probab=97.80 E-value=3.1e-05 Score=76.40 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=65.8
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCC-CccCCcceEEEEEe
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQ-FSLRDVEVVVAQVD 78 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~q-Fs~~dv~v~~a~vD 78 (423)
+|+|+.+...++. ....+.+..+.+++++.+.+|..|.+++...|.|.|+|+ ++|+++++.+. +.+ .+++++||
T Consensus 185 l~ps~~~~~~~~~-~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~il~~~~~~~~e---~~~~a~id 260 (286)
T PLN02798 185 LVPSAFTKPTGEA-HWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVARLPDRLST---GIAVADID 260 (286)
T ss_pred EECCcCCCCCcHH-HHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCccchhhcCCCCCC---CEEEEEec
Confidence 3677777666653 345677889999999999999999876567788999998 99999999985 454 36799999
Q ss_pred ccccccccc
Q 014523 79 LDAVAGFRG 87 (423)
Q Consensus 79 le~vr~~R~ 87 (423)
++.++..|.
T Consensus 261 ~~~~~~~r~ 269 (286)
T PLN02798 261 LSLLDSVRT 269 (286)
T ss_pred HHHHHHHHH
Confidence 998876664
No 77
>PRK14561 hypothetical protein; Provisional
Probab=97.78 E-value=6.4e-05 Score=70.80 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=45.0
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
+++|++|||+||+++++++ .. . .+. .+.++..+. ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l--------~~--------------~-~~v--------------~a~t~~~g~----~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILL--------ER--------------F-YDV--------------ELVTVNFGV----LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHH--------Hh--------------c-CCe--------------EEEEEecCc----hhHHH
Confidence 4899999999999998866 22 1 110 134555553 24588
Q ss_pred HHHHHHHHhCCceEEEecHHHH
Q 014523 235 RAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 235 ~A~~LA~~iG~~h~~i~Id~~v 256 (423)
.|+.+|+.+|++|+.++++..+
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~~ 62 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDREI 62 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHHH
Confidence 9999999999999999998743
No 78
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=97.78 E-value=6.7e-05 Score=78.12 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=49.4
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
+++|++|||+||++++.++ .+ .+.+ ++++++-... ..++.+
T Consensus 1 kVvla~SGGlDSsvll~~l-------~e---------------~g~~----------------V~av~id~Gq-~~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWL-------RE---------------KGYE----------------VIAYTADVGQ-PEEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHH-------HH---------------cCCE----------------EEEEEEecCC-ChHHHH
Confidence 4799999999999999888 22 2322 7777775543 267889
Q ss_pred HHHHHHHHhCC-ceEEEecHHHH
Q 014523 235 RAKKLADEIGS-WHLDVSIDTVV 256 (423)
Q Consensus 235 ~A~~LA~~iG~-~h~~i~Id~~v 256 (423)
.|+++|+.+|+ +|+++|+++.+
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef 64 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEF 64 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHH
Confidence 99999999998 89999997544
No 79
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.77 E-value=0.0001 Score=80.45 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=57.1
Q ss_pred CHHHHHhcHHHHHHHHHHHh--CCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCc
Q 014523 132 PEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 209 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrs--g~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~ 209 (423)
++++....+..-|.+=+++. .-..+.+.||||+||+++|+++. + .+..+
T Consensus 237 ~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~-------~---------------~~~~~------- 287 (589)
T TIGR03104 237 TEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLA-------E---------------AGVDG------- 287 (589)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHH-------H---------------hcCCC-------
Confidence 34444444333444444332 23567889999999999998872 2 22222
Q ss_pred hhhhcCCeEEEEEeCCCCCC---HHHHHHHHHHHHHhCCceEEEecHH
Q 014523 210 SREFAKRIFYTVFMGSENSS---QETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 210 ~~el~~~~v~tv~m~s~~SS---~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
+.|++++...+. ..+...|+++|+.+|..|+.+.+++
T Consensus 288 --------l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 288 --------LRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred --------ceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCH
Confidence 677777665442 3577899999999999999998864
No 80
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.77 E-value=9.2e-05 Score=67.82 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=47.2
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCC--CHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS--SQET 232 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~S--S~~t 232 (423)
.++|++|||+||++++.++ .+.... .+ .+ +.++++.+... +.++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~-------~~~~~~-----------~~-~~---------------v~~v~id~~~~~~~~~~ 46 (185)
T cd01992 1 KILVAVSGGPDSMALLHLL-------SELKPR-----------LG-LR---------------LVAVHVDHGLRPESDEE 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHH-----------cC-Cc---------------EEEEEecCCCCchHHHH
Confidence 4799999999999999988 333110 11 12 78888876543 3589
Q ss_pred HHHHHHHHHHhCCceEEE
Q 014523 233 RMRAKKLADEIGSWHLDV 250 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i 250 (423)
.+.++++|+.+|++++.+
T Consensus 47 ~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 47 AAFVADLCAKLGIPLYIL 64 (185)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 999999999999999888
No 81
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.74 E-value=9.3e-05 Score=76.73 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=62.0
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
+.++++||||+||+++|.++ .+. |.+ +.++++- .++.+.
T Consensus 181 gkvlvllSGGiDSpVAa~ll-------~kr---------------G~~----------------V~~v~f~---~g~~~~ 219 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLM-------MKR---------------GVE----------------VIPVHIY---MGEKTL 219 (381)
T ss_pred CcEEEEEeCChHHHHHHHHH-------HHc---------------CCe----------------EEEEEEE---eCHHHH
Confidence 35899999999999999998 232 543 6777773 346789
Q ss_pred HHHHHHHHHhCCc-------eEEEecHHHHHHHHHHhhhh-cCCCC-------ccc---cchhhcCCCchhhhheeee
Q 014523 234 MRAKKLADEIGSW-------HLDVSIDTVVSAFLSLFQTL-TGKRP-------RYK---LDEVDMGMTYEELSVYGRL 293 (423)
Q Consensus 234 ~~A~~LA~~iG~~-------h~~i~Id~~v~a~~~~~~~~-~g~~p-------~f~---tDE~dmGmtY~~ld~~~rl 293 (423)
+.++++|+.||.+ +++++.... +.+...+... ....+ .|+ .-..+.|..+..++|++..
T Consensus 220 e~v~~la~~L~~~~~~~~i~l~~v~~~~~-~~v~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgq 296 (381)
T PRK08384 220 EKVRKIWNQLKKYHYGGKAELIVVKPQER-ERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQ 296 (381)
T ss_pred HHHHHHHHHhcccccCCcceEEEEChHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchh
Confidence 9999999999955 555555321 1122222211 11111 122 1234689999999998754
No 82
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.73 E-value=0.00017 Score=78.77 Aligned_cols=99 Identities=33% Similarity=0.357 Sum_probs=60.8
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhh
Q 014523 134 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 213 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el 213 (423)
+++...+...++.+|+. -..+-+-||||+|||++|+|+. +...++. .|.......
T Consensus 220 ~~lr~~L~~AV~~rl~s--dvpvGv~LSGGLDSSlIaala~-------~~~~~~~----~~~~~~~~~------------ 274 (586)
T PTZ00077 220 EEIREALEAAVRKRLMG--DVPFGLFLSGGLDSSIVAAIVA-------KLIKNGE----IDLSKRGMP------------ 274 (586)
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEEecCCchHHHHHHHHH-------Hhhcccc----cccccccCC------------
Confidence 33444444444444432 2457788999999999999983 3321100 000000001
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec--HHHHHHHHHH
Q 014523 214 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI--DTVVSAFLSL 262 (423)
Q Consensus 214 ~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~I--d~~v~a~~~~ 262 (423)
.++|+..+...+ .+...|+++|+.||..|+++.+ ++..+.+.++
T Consensus 275 ---~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 275 ---KLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred ---CceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 277888887654 4688999999999999988865 4555555444
No 83
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=97.73 E-value=5e-05 Score=75.45 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=62.1
Q ss_pred CccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCC--------------CCceEEcCCeeee-eCCceeeeeCCCccCCc
Q 014523 6 SHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCD--------------GGRLYFDGCSCVV-VNGDMIAQGSQFSLRDV 70 (423)
Q Consensus 6 Sh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d--------------~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv 70 (423)
+++..++ .....+.+..+..++++.+++|++|-+ .+...|.|.|+|+ ++|+++++++.+.++
T Consensus 185 ~~~~~~~-~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il~~~~~~~e~-- 261 (297)
T cd07564 185 SPYYLSR-EAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVLAGPLPDEEG-- 261 (297)
T ss_pred ccccccH-HHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccccccccccCCCceEEECCCCCeecCCCCCCce--
Confidence 3444555 344678899999999999999999954 1346799999999 999999999877663
Q ss_pred ceEEEEEeccccccccc
Q 014523 71 EVVVAQVDLDAVAGFRG 87 (423)
Q Consensus 71 ~v~~a~vDle~vr~~R~ 87 (423)
++++++|++.++..|.
T Consensus 262 -~l~a~id~~~~~~~r~ 277 (297)
T cd07564 262 -ILYADIDLDDIVEAKL 277 (297)
T ss_pred -EEEEEecHHHHHHHHh
Confidence 5799999998876664
No 84
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.70 E-value=0.00016 Score=74.72 Aligned_cols=101 Identities=21% Similarity=0.186 Sum_probs=65.7
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCC-CCCHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-NSSQET 232 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~-~SS~~t 232 (423)
.+++++||||+||++++.++ .+. |.+ ++++++.+. .++.++
T Consensus 173 ~kvlvllSGGiDS~vaa~ll-------~kr---------------G~~----------------V~av~~~~~~~~~~~~ 214 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMM-------MKR---------------GCR----------------VVAVHFFNEPAASEKA 214 (371)
T ss_pred CeEEEEecCCchHHHHHHHH-------HHc---------------CCe----------------EEEEEEeCCCCccHHH
Confidence 45899999999999999988 232 432 777877654 345678
Q ss_pred HHHHHHHHHHhC-----CceEEEecHHHHHHHHHHhhhh----cCCCCccc---cchhhcCCCchhhhheee
Q 014523 233 RMRAKKLADEIG-----SWHLDVSIDTVVSAFLSLFQTL----TGKRPRYK---LDEVDMGMTYEELSVYGR 292 (423)
Q Consensus 233 ~~~A~~LA~~iG-----~~h~~i~Id~~v~a~~~~~~~~----~g~~p~f~---tDE~dmGmtY~~ld~~~r 292 (423)
.+.|+.+|+.++ +.++.+|+.+.+..+....... ..+.-.|+ .-.++.|.++..+++.+-
T Consensus 215 ~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~ 286 (371)
T TIGR00342 215 REKVERLANSLNETGGSVKLYVFDFTDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLG 286 (371)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChH
Confidence 899999999983 4788999988776554322110 00000011 113457888877777653
No 85
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.70 E-value=8.9e-05 Score=76.95 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=64.0
Q ss_pred eEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHH
Q 014523 156 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 235 (423)
Q Consensus 156 ~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~ 235 (423)
++|++|||+||++++.++ .+. +... ++++++-..... +..+.
T Consensus 1 Vvva~SGGlDSsvll~~l-------~e~---------------~~~e---------------V~av~~d~Gq~~-~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWL-------KEK---------------GGYE---------------VIAVTADVGQPE-EEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHH-------HHh---------------CCCe---------------EEEEEEECCCcc-hhHHH
Confidence 589999999999999988 343 2222 777777654433 33489
Q ss_pred HHHHHHHhCCc-eEEEecHHHHHH-H-HHHhhh-h--cCCCCc---------cc---cchhhcCCCchhhhhee
Q 014523 236 AKKLADEIGSW-HLDVSIDTVVSA-F-LSLFQT-L--TGKRPR---------YK---LDEVDMGMTYEELSVYG 291 (423)
Q Consensus 236 A~~LA~~iG~~-h~~i~Id~~v~a-~-~~~~~~-~--~g~~p~---------f~---tDE~dmGmtY~~ld~~~ 291 (423)
|+++|+.+|+. |+++|+++.+.. + ...+.. . -+..|- ++ .-..+.|+++..++.-+
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 99999999996 999999986653 2 222221 1 132221 11 11335788888887764
No 86
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=97.70 E-value=4.9e-05 Score=73.54 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=52.1
Q ss_pred HHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEeccccccccc
Q 014523 21 ISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRG 87 (423)
Q Consensus 21 ~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~vr~~R~ 87 (423)
...+.+++++.+++|+.|.+ +...|.|.|+|+ ++|+++++.+.. + .+++++||++.++..|.
T Consensus 183 ~~rA~en~~~vv~an~~G~~-~~~~~~G~S~ii~p~G~il~~~~~~-e---~~~~a~id~~~~~~~r~ 245 (258)
T cd07578 183 INRAFENGCYLIESNRWGLE-RGVQFSGGSCIIEPDGTIQASIDSG-D---GVALGEIDLDRARHRQF 245 (258)
T ss_pred HHhhhcCCeEEEEecceecc-CCcceeeEEEEECCCCcEeeccCCC-C---ceEEEEecchHhhhhhc
Confidence 46788999999999999998 567899999999 899999988732 2 46899999999876664
No 87
>PRK08349 hypothetical protein; Validated
Probab=97.66 E-value=0.00019 Score=67.45 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=40.3
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
++++.+|||+||+++|.++. + .|.+ ++++++-. ...+.+
T Consensus 2 ~~vvllSGG~DS~v~~~~l~-------~---------------~g~~----------------v~av~~d~---~~~~~~ 40 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLML-------R---------------RGVE----------------VYPVHFRQ---DEKKEE 40 (198)
T ss_pred cEEEEccCChhHHHHHHHHH-------H---------------cCCe----------------EEEEEEeC---CHHHHH
Confidence 57999999999999999872 2 2432 77777764 345666
Q ss_pred HHHHHHHHhC----Cce---EEEecH
Q 014523 235 RAKKLADEIG----SWH---LDVSID 253 (423)
Q Consensus 235 ~A~~LA~~iG----~~h---~~i~Id 253 (423)
.|+++|+.++ ++| ..++..
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~v~~~ 66 (198)
T PRK08349 41 KVRELVERLQELHGGKLKDPVVVDAF 66 (198)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcch
Confidence 7777777664 776 445543
No 88
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.63 E-value=0.00034 Score=76.20 Aligned_cols=97 Identities=24% Similarity=0.211 Sum_probs=58.6
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhh
Q 014523 134 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 213 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el 213 (423)
+++...+..-++..|.. -..+.+-||||+|||++|+++. +.+.. -. ....+
T Consensus 208 ~~lr~~L~~aV~~rl~s--dvpvgv~LSGGLDSSlIaala~-------~~~~~-----------~~-~~~~~-------- 258 (578)
T PLN02549 208 LVLREAFEKAVIKRLMT--DVPFGVLLSGGLDSSLVASIAA-------RHLAE-----------TK-AARQW-------- 258 (578)
T ss_pred HHHHHHHHHHHHHHhcc--CCceeEeecCCccHHHHHHHHH-------Hhhhh-----------cc-ccccc--------
Confidence 34444444444444431 2357788999999999999983 33111 00 00000
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecH--HHHHHHHHH
Q 014523 214 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSL 262 (423)
Q Consensus 214 ~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id--~~v~a~~~~ 262 (423)
...++|+..+..++ .+...|+.+|+.||..|+++.++ +..+.+.++
T Consensus 259 -~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~ 306 (578)
T PLN02549 259 -GQQLHSFCVGLEGS--PDLKAAREVADYLGTVHHEFHFTVQEGIDAIEDV 306 (578)
T ss_pred -CCCceEEecCCCCC--CHHHHHHHHHHHhCCCCeEEEEChHHHHHHHHHH
Confidence 00267777777654 46889999999999999987764 344444333
No 89
>PRK08576 hypothetical protein; Provisional
Probab=97.54 E-value=0.00044 Score=72.91 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=52.2
Q ss_pred HHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeC
Q 014523 145 WDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG 224 (423)
Q Consensus 145 ~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~ 224 (423)
.+++++-+...++|++|||.||++++.++ .++ .+ + +.++++-
T Consensus 226 ~~~Lr~~~~~rVvVafSGGKDStvLL~La-------~k~--------------~~-~----------------V~aV~iD 267 (438)
T PRK08576 226 IKFLRKFEEWTVIVPWSGGKDSTAALLLA-------KKA--------------FG-D----------------VTAVYVD 267 (438)
T ss_pred HHHHHHcCCCCEEEEEcChHHHHHHHHHH-------HHh--------------CC-C----------------CEEEEeC
Confidence 33455555558999999999999999887 344 22 1 5677777
Q ss_pred CCCCCHHHHHHHHHHHHHhCCceEE
Q 014523 225 SENSSQETRMRAKKLADEIGSWHLD 249 (423)
Q Consensus 225 s~~SS~~t~~~A~~LA~~iG~~h~~ 249 (423)
+....++|.+.++++|+.+|++++.
T Consensus 268 TG~e~pet~e~~~~lae~LGI~lii 292 (438)
T PRK08576 268 TGYEMPLTDEYVEKVAEKLGVDLIR 292 (438)
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEE
Confidence 6666788999999999999999987
No 90
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.52 E-value=0.00029 Score=65.13 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=43.5
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
+++|++|||.||.+.+.++. +-.. ..+.. -.+.+|-.+....|.+...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~-------~~~~------------~~~~~-------------~~~~~vdh~~~~~s~~~~~ 48 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLK-------ELRR------------RNGIK-------------LIAVHVDHGLREESDEEAE 48 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHH-------HHHT------------TTTTE-------------EEEEEEE-STSCCHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHH-------HHHH------------hcCCC-------------eEEEEEecCCCcccchhHH
Confidence 47999999999999888883 2211 11111 1234455555556777888
Q ss_pred HHHHHHHHhCCceEEEecHH
Q 014523 235 RAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 235 ~A~~LA~~iG~~h~~i~Id~ 254 (423)
..+++|+.+|++++...++.
T Consensus 49 ~v~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 49 FVEEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHHHTT-EEEEEE--C
T ss_pred HHHHHHHhcCCceEEEEeee
Confidence 99999999999999999986
No 91
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.50 E-value=0.00049 Score=62.53 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=41.8
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
+++|++|||+||++++.++. +. +.+ ++++++.....+....+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~-------~~---------------~~~----------------v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK-------KE---------------GYE----------------VHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHHH-------Hc---------------CCc----------------EEEEEEECCCCChhHHH
Confidence 47899999999999998882 22 322 66677654333445668
Q ss_pred HHHHHHHHhCCceEEEec
Q 014523 235 RAKKLADEIGSWHLDVSI 252 (423)
Q Consensus 235 ~A~~LA~~iG~~h~~i~I 252 (423)
.++.+|+.+| ++..++.
T Consensus 43 ~~~~~~~~~g-~~~~~~~ 59 (169)
T cd01995 43 AAKLIAEKLG-PSTYVPA 59 (169)
T ss_pred HHHHHHHHHC-CCEEEeC
Confidence 9999999999 5555544
No 92
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00051 Score=71.43 Aligned_cols=77 Identities=35% Similarity=0.489 Sum_probs=55.2
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 234 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~ 234 (423)
.|=+-||||+|||++|+|+. +.+++- .+.+ + .+ ++++-.|-++| -+..
T Consensus 227 p~GvLLSGGLDSSLvAsia~-------R~lk~~------~~~~-~-~~---------------lhsFaIGle~S--PDL~ 274 (543)
T KOG0571|consen 227 PFGVLLSGGLDSSLVASIAA-------RELKKA------QAAR-G-SK---------------LHSFAIGLEDS--PDLL 274 (543)
T ss_pred ceeEEeeCCchHHHHHHHHH-------HHHHHh------hhhc-C-CC---------------ceEEEecCCCC--hhHH
Confidence 45566999999999999994 443320 0000 1 12 78888888877 4789
Q ss_pred HHHHHHHHhCCceEE--EecHHHHHHHHHHh
Q 014523 235 RAKKLADEIGSWHLD--VSIDTVVSAFLSLF 263 (423)
Q Consensus 235 ~A~~LA~~iG~~h~~--i~Id~~v~a~~~~~ 263 (423)
.|+++|+-||+.|++ +.+++-.+++.+++
T Consensus 275 aarkVAd~igt~Hhe~~ft~qegidal~eVI 305 (543)
T KOG0571|consen 275 AARKVADFIGTIHHEHTFTIQEGIDALDEVI 305 (543)
T ss_pred HHHHHHHHhCCcceEEEEcHHHHHHHHHHHh
Confidence 999999999999966 46667777765544
No 93
>PLN02504 nitrilase
Probab=97.42 E-value=0.00019 Score=73.35 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCC--------------CCC-----CceEEcCCeeee-eCCceeeeeCCCccCCcceE
Q 014523 14 DYRIRAFISATHSRGGVYMYSNQQG--------------CDG-----GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVV 73 (423)
Q Consensus 14 ~~R~~Li~~~s~k~g~~yvYaN~~G--------------~d~-----~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~ 73 (423)
.....+++..+.++++..+++|++| +.. +.+.|.|.|+|+ ++|++++++....+ +++
T Consensus 215 ~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e---~il 291 (346)
T PLN02504 215 ETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGE---GLI 291 (346)
T ss_pred hhHHHHHHHHHHccCcEEEEecccccccccCcccccccccccccccccccccCcceEEECCCCCEecCCCCCCC---cEE
Confidence 3456678889999999999999996 111 347799999999 99999988753333 367
Q ss_pred EEEEecccccccccC
Q 014523 74 VAQVDLDAVAGFRGS 88 (423)
Q Consensus 74 ~a~vDle~vr~~R~~ 88 (423)
+|+||+++++..|..
T Consensus 292 ~adiDl~~i~~~R~~ 306 (346)
T PLN02504 292 TADLDLGEIARAKFD 306 (346)
T ss_pred EEEEcHHHHHHHHhh
Confidence 999999988766644
No 94
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.42 E-value=0.00034 Score=64.21 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=17.6
Q ss_pred ceEEeccCCccHHHHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIV 173 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv 173 (423)
+++|++|||+||+++|.++
T Consensus 1 ~vlv~~SGG~DS~~la~ll 19 (177)
T cd01712 1 KALALLSGGIDSPVAAWLL 19 (177)
T ss_pred CEEEEecCChhHHHHHHHH
Confidence 4789999999999999988
No 95
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00079 Score=72.88 Aligned_cols=95 Identities=26% Similarity=0.235 Sum_probs=64.2
Q ss_pred CHHHHHhcHHHHHHHHHHHhC--CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCc
Q 014523 132 PEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 209 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg--~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~ 209 (423)
..++....+..-|.+=+++.- -..+.+-||||+|||++|+++. +. ....
T Consensus 207 ~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~-------~~---------------~~~~------- 257 (542)
T COG0367 207 SADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAA-------EE---------------LGKE------- 257 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHH-------Hh---------------cccc-------
Confidence 455666666777777776654 3456667999999999999993 33 1121
Q ss_pred hhhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecH--HHHHHHHHH
Q 014523 210 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSL 262 (423)
Q Consensus 210 ~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id--~~v~a~~~~ 262 (423)
..+|...+.+++...+..-|+.+|+.||..|+.+.+. ++.+++..+
T Consensus 258 -------~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~v 305 (542)
T COG0367 258 -------GKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEV 305 (542)
T ss_pred -------ceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHH
Confidence 1223555666665568999999999999999777664 455554333
No 96
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.29 E-value=0.00035 Score=67.03 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCceEEEecH
Q 014523 231 ETRMRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 231 ~t~~~A~~LA~~iG~~h~~i~Id 253 (423)
...+.|+.+|+.+|++|+.++++
T Consensus 43 ~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 43 PNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCHHHHHHHHHHhCCCEEEEECC
Confidence 46789999999999999999987
No 97
>PRK13795 hypothetical protein; Provisional
Probab=97.28 E-value=0.0017 Score=71.62 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=65.0
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhh
Q 014523 134 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 213 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el 213 (423)
+++......+|+.++.+. ...++|++|||.||++++.|+ .++ .. +
T Consensus 225 ~~~~~~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~-------~~a--------------~~-~------------ 269 (636)
T PRK13795 225 EEKEKEAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLA-------REA--------------LK-D------------ 269 (636)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHH-------HHh--------------CC-C------------
Confidence 445555566777776655 357999999999999999998 354 21 1
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHH
Q 014523 214 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVS 257 (423)
Q Consensus 214 ~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~ 257 (423)
+..+|.-|....++|.+.++++++.+|++++.+..+..+.
T Consensus 270 ----~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~f~ 309 (636)
T PRK13795 270 ----FKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDAFW 309 (636)
T ss_pred ----cEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHhHH
Confidence 5567777766778999999999999999999998875443
No 98
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00098 Score=66.03 Aligned_cols=69 Identities=25% Similarity=0.337 Sum_probs=51.0
Q ss_pred hCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCH
Q 014523 151 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 230 (423)
Q Consensus 151 sg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~ 230 (423)
-|..+++++||||+||+++|+|+ .+| +| ++ ++|++.-+----.
T Consensus 19 vg~~kvi~alSGGVDSsv~a~L~-------~~A--------------iG-d~---------------l~cvfVD~GLlR~ 61 (315)
T COG0519 19 VGDGKVILALSGGVDSSVAAVLA-------HRA--------------IG-DQ---------------LTCVFVDHGLLRK 61 (315)
T ss_pred hCCceEEEEecCCCcHHHHHHHH-------HHH--------------hh-cc---------------eEEEEecCCcccC
Confidence 46789999999999999999999 588 66 33 8888887543322
Q ss_pred -HHHHHHHHHHHHhCCceEEEecHHHH
Q 014523 231 -ETRMRAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 231 -~t~~~A~~LA~~iG~~h~~i~Id~~v 256 (423)
+..+--+.+.+.+|++...+|-.+-|
T Consensus 62 ~E~e~V~~~f~~~~~~nl~~VdA~~~F 88 (315)
T COG0519 62 GEAEQVVEMFREHLGLNLIVVDAKDRF 88 (315)
T ss_pred CcHHHHHHHHHhhcCCceEEEchHHHH
Confidence 33334445677799999888876544
No 99
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.15 E-value=0.0017 Score=63.51 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=43.7
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
...++|++|||.||++.+.++. +- .. ..... -.+.++..-....+ .+
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~-------~l-~~-----------~~~~~-------------~~l~av~vd~g~~~-~~ 75 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILL-------NL-QK-----------RAPIN-------------FELVAVNLDQKQPG-FP 75 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHH-------HH-HH-----------hCCCC-------------eEEEEEEecCCCCC-CC
Confidence 3579999999999999888873 21 10 11100 01555554332222 22
Q ss_pred HHHHHHHHHHhCCceEEEecHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
.+.++++|+++|++|++++++.
T Consensus 76 ~~~~~~~~~~lgI~~~v~~~~~ 97 (258)
T PRK10696 76 EHVLPEYLESLGVPYHIEEQDT 97 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEecc
Confidence 3357899999999999988763
No 100
>PRK13794 hypothetical protein; Provisional
Probab=97.14 E-value=0.0035 Score=66.99 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=61.2
Q ss_pred HHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhc
Q 014523 135 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFA 214 (423)
Q Consensus 135 ei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~ 214 (423)
.+......+|+..+.+.+ ..++|++|||.||++++.|+ .++ ++ .+
T Consensus 230 ~~~~~a~~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~-------~~~--------------~~-~~------------ 274 (479)
T PRK13794 230 KYERNSIGFIRNTAEKIN-KPVTVAYSGGKDSLATLLLA-------LKA--------------LG-IN------------ 274 (479)
T ss_pred HHHHHHHHHHHHHHHhcC-CCEEEEecchHHHHHHHHHH-------HHH--------------hC-CC------------
Confidence 344444555655554443 57999999999999999988 455 32 22
Q ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecH
Q 014523 215 KRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 215 ~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id 253 (423)
+..+|+-|....++|.+.++++++.+|++++.+..+
T Consensus 275 ---~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 275 ---FPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred ---eEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 677888776667899999999999999999888766
No 101
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=97.05 E-value=0.0017 Score=65.32 Aligned_cols=74 Identities=11% Similarity=-0.058 Sum_probs=55.8
Q ss_pred ccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eC-CceeeeeCCCccCCcceEEEEEecc
Q 014523 3 ASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VN-GDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 3 ~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~n-G~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
+++.+...++ .....+.+..+..+++..+.||+.|.+ .|.|+|+|+ .+ |+++++++....+ .+++++||++
T Consensus 204 paaw~~~~~~-~~w~~l~~arA~eN~~~vi~~N~~g~~----~~~G~S~iv~P~~G~v~a~~~~~~~e--~~l~~~id~~ 276 (299)
T cd07567 204 PTAWFSELPF-LTAVQIQQAWAYANGVNLLAANYNNPS----AGMTGSGIYAGRSGALVYHYDNEPGG--KLLVAEVPKL 276 (299)
T ss_pred CCccCCCCCc-hhHHHHHHHHHHHcCceEEEecCCCCc----CccccceEEcCCCCcEEEEecCCCCc--eEEEEEccCC
Confidence 4444433333 344578899999999999999999864 366999999 89 9999998765332 4689999998
Q ss_pred ccc
Q 014523 81 AVA 83 (423)
Q Consensus 81 ~vr 83 (423)
.+|
T Consensus 277 ~~~ 279 (299)
T cd07567 277 PSR 279 (299)
T ss_pred ccc
Confidence 765
No 102
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.02 E-value=0.0012 Score=62.68 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=49.9
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeC-CCCCCHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG-SENSSQET 232 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~-s~~SS~~t 232 (423)
.++++-||||+||.+++.++ .+. |.+ ++++++- ...++..+
T Consensus 4 gk~l~LlSGGiDSpVAa~lm-------~kr---------------G~~----------------V~~l~f~~~~~~~~~~ 45 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLM-------MKR---------------GCE----------------VIALHFDSPPFTGEKA 45 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHH-------HCB---------------T-E----------------EEEEEEE-TTTSSCCC
T ss_pred ceEEEEecCCccHHHHHHHH-------HHC---------------CCE----------------EEEEEEECCCCCCHHH
Confidence 45788899999999999988 232 433 7888884 33456667
Q ss_pred HHHHHHHHHHhC-------CceEEEecHHHHHHHHHHh
Q 014523 233 RMRAKKLADEIG-------SWHLDVSIDTVVSAFLSLF 263 (423)
Q Consensus 233 ~~~A~~LA~~iG-------~~h~~i~Id~~v~a~~~~~ 263 (423)
++.++++++.+. ++++.+|+.+.+..+....
T Consensus 46 ~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 46 REKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp HHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 777777777763 5678889888887765433
No 103
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.00 E-value=0.0068 Score=61.14 Aligned_cols=69 Identities=19% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
...++|++|||.||++++.|+ .+++.. ...+ +..++.-|....++|
T Consensus 27 f~~~vv~~SGGKDS~VLL~La-------~ka~~~------------~~~~---------------~~vl~iDTG~~FpEt 72 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLA-------RKAFYP------------GKLP---------------FPLLHVDTGWKFPEM 72 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHH-------HHhhcc------------cCCC---------------eeEEEEeCCCCCHHH
Confidence 368999999999999999999 466211 0111 445555554556899
Q ss_pred HHHHHHHHHHhCCceEEEecHHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
.+.+.++|+.+|++++++..++.
T Consensus 73 ~ef~d~~a~~~gl~l~v~~~~~~ 95 (301)
T PRK05253 73 IEFRDRRAKELGLELIVHSNPEG 95 (301)
T ss_pred HHHHHHHHHHhCCCEEEEeChHH
Confidence 99999999999999999876643
No 104
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.0044 Score=61.10 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=50.1
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhc-cCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGR-YANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~-~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
..++|++|||-||++.+.++. +. .. -. -.+.+|.-+-...+...
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~-------~l---------------~~~~~-------------~~a~~Vd~~~~~~~~~~ 66 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLK-------EL---------------GRRIE-------------VEAVHVDHGLRGYSDQE 66 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHH-------Hh---------------ccCce-------------EEEEEecCCCCCccchH
Confidence 689999999999999999883 22 21 01 01444544544345778
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVVS 257 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v~ 257 (423)
...++.+|+.+|+++.+.+++..+.
T Consensus 67 ~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (298)
T COG0037 67 AELVEKLCEKLGIPLIVERVTDDLG 91 (298)
T ss_pred HHHHHHHHHHhCCceEEEEEEeecc
Confidence 8899999999999998888876543
No 105
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.79 E-value=0.0063 Score=59.11 Aligned_cols=75 Identities=17% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEE
Q 014523 141 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYT 220 (423)
Q Consensus 141 a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~t 220 (423)
...|+.-+++-+ ..++|++|||-||++++.|+. +. +.+ +..
T Consensus 29 ~e~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~~-------~~---------------~~~----------------i~v 69 (241)
T PRK02090 29 QERLAWALENFG-GRLALVSSFGAEDAVLLHLVA-------QV---------------DPD----------------IPV 69 (241)
T ss_pred HHHHHHHHHHcC-CCEEEEecCCHHHHHHHHHHH-------hc---------------CCC----------------CcE
Confidence 344555555544 359999999999999999883 22 221 567
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHH
Q 014523 221 VFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 221 v~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
+|+-+..-.++|.+-++++++.+|+.++++..+.
T Consensus 70 vfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 70 IFLDTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 7777766788999999999999999999887653
No 106
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=96.73 E-value=0.0036 Score=66.06 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=45.4
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeC--CCCCCHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG--SENSSQE 231 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~--s~~SS~~ 231 (423)
+.++|++|||+||.+.+.++. +. .. ...+.+ +++++.- -...|.+
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~-------~~-~~---------~~~~~~----------------l~a~hvnhglr~~s~~ 62 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLV-------QW-RT---------ENPGVT----------------LRAIHVHHGLSPNADS 62 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHH-------HH-HH---------hcCCCe----------------EEEEEEeCCCCcchHH
Confidence 679999999999999888773 21 00 001111 5555543 3334556
Q ss_pred HHHHHHHHHHHhCCceEEEecH
Q 014523 232 TRMRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 232 t~~~A~~LA~~iG~~h~~i~Id 253 (423)
..+.++.+|+++|++|+.++++
T Consensus 63 ~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 63 WVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred HHHHHHHHHHHcCCcEEEEEEe
Confidence 6778899999999999887765
No 107
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=96.71 E-value=0.0026 Score=62.91 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeC-CCccCCcceEEEEEecccccc
Q 014523 18 RAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGS-QFSLRDVEVVVAQVDLDAVAG 84 (423)
Q Consensus 18 ~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~-qFs~~dv~v~~a~vDle~vr~ 84 (423)
.+++..+.++++..++||.+|.+ ..|.|.|+|+ ++|.+++.+. .... +-++++++||++.++.
T Consensus 191 ~~~~aRA~EN~~~vv~aN~~g~~---~~~~G~S~ii~P~G~v~~~~~~~~~~-~e~~l~a~id~~~~~~ 255 (279)
T cd07579 191 HLARVRAGENNVYFAFANVPDPA---RGYTGWSGVFGPDTFAFPRQEAAIGD-EEGIAWALIDTSNLDS 255 (279)
T ss_pred HHhHhHHhhCCeEEEEeeccCCc---cccccccEEECCCeEEcchhhcccCC-CCcEEEEEecchhhcc
Confidence 46899999999999999999876 2378999999 8999985421 1222 2357899999998764
No 108
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.70 E-value=0.0065 Score=54.56 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=46.7
Q ss_pred eEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHH
Q 014523 156 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 235 (423)
Q Consensus 156 ~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~ 235 (423)
++|+.|||-||++++.|+ .++ +.. +..+++-+....++|.+-
T Consensus 2 i~vs~SGGKDS~v~l~l~-------~~~---------------~~~----------------~~vv~~dtg~e~p~t~~~ 43 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLA-------REA---------------GRK----------------VPVVFIDTGYEFPETYEF 43 (174)
T ss_dssp EEEE--SSHHHHHHHHHH-------HHH---------------HTT----------------CEEEEEE-STB-HHHHHH
T ss_pred eEEEecCCHHHHHHHHHH-------HHh---------------cCC----------------CcEEEEecCccCHHHHHH
Confidence 689999999999999998 455 211 234555555668899999
Q ss_pred HHHHHHHhCCceEEEecHHHHHHH
Q 014523 236 AKKLADEIGSWHLDVSIDTVVSAF 259 (423)
Q Consensus 236 A~~LA~~iG~~h~~i~Id~~v~a~ 259 (423)
++.+++.+|+....+.....+...
T Consensus 44 ~~~~~~~~~~~i~~~~~~~~~~~~ 67 (174)
T PF01507_consen 44 VDELAKRYGIPIIVYRPPETFEQR 67 (174)
T ss_dssp HHHHHHHTTCEEEEEETTSHHHHH
T ss_pred HHHHHhhhhhhhhhcccccchhhc
Confidence 999999999997777666554433
No 109
>PRK08557 hypothetical protein; Provisional
Probab=96.56 E-value=0.021 Score=60.08 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=59.2
Q ss_pred HHHHhcHHHHHHHHHHHhCCC--ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 134 EEIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~--g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
+++.......|+..+++.+.+ .+++++|||.||++++.|+ .++ ..+
T Consensus 160 ~~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~-------~~~---------------~~~---------- 207 (417)
T PRK08557 160 EKLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLA-------KEV---------------IPD---------- 207 (417)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHH-------HHh---------------CCC----------
Confidence 445555566677777766543 4789999999999998877 233 221
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecH
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id 253 (423)
+..++.-|..-.++|.+..+++++.+|+++..+.-+
T Consensus 208 ------i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 208 ------LEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred ------CEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 445555554556899999999999999999888754
No 110
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.52 E-value=0.0056 Score=51.31 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=16.6
Q ss_pred eEEeccCCccHHHHHHHH
Q 014523 156 FLLPLSGGADSSSVAAIV 173 (423)
Q Consensus 156 ~~l~LSGGiDSa~~A~lv 173 (423)
++|++|||+||++++.++
T Consensus 1 v~v~~SGG~DS~~ll~~l 18 (103)
T cd01986 1 VLVAFSGGKDSSVAAALL 18 (103)
T ss_pred CEEEEeCcHHHHHHHHHH
Confidence 589999999999999888
No 111
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=96.47 E-value=0.0092 Score=63.77 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=44.7
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEe--CCCCCCHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM--GSENSSQET 232 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m--~s~~SS~~t 232 (423)
++++.||||+||+++|.++. + .|.+ ++++++ |...+....
T Consensus 179 k~lvllSGGiDS~va~~~~~-------k---------------rG~~----------------v~~l~f~~g~~~~~~~~ 220 (482)
T PRK01269 179 DVLSLISGGFDSGVASYMLM-------R---------------RGSR----------------VHYCFFNLGGAAHEIGV 220 (482)
T ss_pred eEEEEEcCCchHHHHHHHHH-------H---------------cCCE----------------EEEEEEecCCchhHHHH
Confidence 47888999999999998882 2 2332 555554 433222236
Q ss_pred HHHHHHHHHHhC----CceEEEecHHHHHHH
Q 014523 233 RMRAKKLADEIG----SWHLDVSIDTVVSAF 259 (423)
Q Consensus 233 ~~~A~~LA~~iG----~~h~~i~Id~~v~a~ 259 (423)
++.|+.+|+.++ +.++++++.+.+.+.
T Consensus 221 ~~~a~~l~~~~~~~~~~~l~~v~~~~~~~~i 251 (482)
T PRK01269 221 KQVAHYLWNRYGSSHRVRFISVDFEPVVGEI 251 (482)
T ss_pred HHHHHHHHHHhCccCCceEEEEecHHHHHHH
Confidence 778888888776 446778877766544
No 112
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.014 Score=60.36 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
.++++|+.|||+|+|++.-.+ .+. .+.+ ++|++.---+. .++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL-------~e~--------------~~~e----------------Via~tadvGQ~-eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWL-------KEK--------------GGAE----------------VIAVTADVGQP-EED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHH-------HHh--------------cCce----------------EEEEEEeCCCC-hHH
Confidence 478999999999999998888 344 3333 77776654333 689
Q ss_pred HHHHHHHHHHhCCc-eEEEecHHHHH
Q 014523 233 RMRAKKLADEIGSW-HLDVSIDTVVS 257 (423)
Q Consensus 233 ~~~A~~LA~~iG~~-h~~i~Id~~v~ 257 (423)
.+.+++=|..+|+. |+++|..+.|-
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF~ 71 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEFV 71 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHHH
Confidence 99999999999997 99999987654
No 113
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=96.22 E-value=0.012 Score=57.72 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEeccc
Q 014523 12 KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDA 81 (423)
Q Consensus 12 K~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~ 81 (423)
+...+..+.+..+.+++++.++||+. |.|+|+ ++|+++++.+.|.++ +++++||++.
T Consensus 194 ~~~~~~~~~~arA~en~~~vv~~n~~----------G~S~ivdp~G~ii~~~~~~~e~---~~~~~i~~~~ 251 (270)
T cd07571 194 GPYQHLAMARLRAIETGRPLVRAANT----------GISAVIDPDGRIVARLPLFEAG---VLVAEVPLRT 251 (270)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEcCC----------eeeEEECCCCcEEeecCCCcce---EEEEEeccCC
Confidence 34566678889999999999999974 679999 999999999988663 4688998875
No 114
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.21 E-value=0.0099 Score=61.88 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=44.1
Q ss_pred EEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHHH
Q 014523 157 LLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRA 236 (423)
Q Consensus 157 ~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~A 236 (423)
||+.|||+|||+++..+ .+. +... |+|++.-.-+ +.++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L-------~e~---------------~~~~---------------Via~~aDlGq-~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWL-------KEE---------------GGYE---------------VIAVTADLGQ-PDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHH-------HHT---------------TTEE---------------EEEEEEESSS-T-S-HHHH
T ss_pred CeeeCCChHHHHHHHHH-------Hhh---------------cCce---------------EEEEEEECCC-cHHHHHHH
Confidence 68999999999998877 233 3222 7777665533 45789999
Q ss_pred HHHHHHhCC-ceEEEecHHHHH
Q 014523 237 KKLADEIGS-WHLDVSIDTVVS 257 (423)
Q Consensus 237 ~~LA~~iG~-~h~~i~Id~~v~ 257 (423)
++-|..+|+ .|+++|..+.|-
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHH
T ss_pred HHHHHhcCCceeeecchHHHHH
Confidence 999999998 999999987665
No 115
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.014 Score=53.99 Aligned_cols=59 Identities=29% Similarity=0.325 Sum_probs=47.9
Q ss_pred eEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHH
Q 014523 156 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 235 (423)
Q Consensus 156 ~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~ 235 (423)
+-+-+|||-|||++|.|+ +. +|++. -++||..+--. +-.-
T Consensus 3 v~vLfSGGKDSSLaA~iL--------~k--------------lgyev--------------~LVTvnFGv~d----~~k~ 42 (198)
T COG2117 3 VYVLFSGGKDSSLAALIL--------DK--------------LGYEV--------------ELVTVNFGVLD----SWKY 42 (198)
T ss_pred eEEEecCCCchhHHHHHH--------HH--------------hCCCc--------------EEEEEEecccc----chhh
Confidence 456789999999999988 44 67664 37899888653 4577
Q ss_pred HHHHHHHhCCceEEEecHH
Q 014523 236 AKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 236 A~~LA~~iG~~h~~i~Id~ 254 (423)
|++-|+.+|-+|.++.++.
T Consensus 43 A~~tA~~lgF~h~vl~Ldr 61 (198)
T COG2117 43 ARETAAILGFPHEVLQLDR 61 (198)
T ss_pred HHHHHHHhCCCcceeccCH
Confidence 8899999999999999875
No 116
>PRK05370 argininosuccinate synthase; Validated
Probab=96.17 E-value=0.016 Score=61.05 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=52.7
Q ss_pred CCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHH
Q 014523 152 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 231 (423)
Q Consensus 152 g~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~ 231 (423)
+-++++|+.|||+|||+++..+ +. -+.+ |+|+..-.-....+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL--------~e--------------~~~e----------------Via~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWM--------RQ--------------KGAV----------------PYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHH--------Hh--------------cCCe----------------EEEEEEECCCCCcc
Confidence 4468999999999999998877 22 1222 66665543332246
Q ss_pred HHHHHHHHHHHhCC-ceEEEecHHHHH-HHHHHh
Q 014523 232 TRMRAKKLADEIGS-WHLDVSIDTVVS-AFLSLF 263 (423)
Q Consensus 232 t~~~A~~LA~~iG~-~h~~i~Id~~v~-a~~~~~ 263 (423)
+.+.+++-|..+|+ .|+++|..+.|- .++..+
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI 85 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAI 85 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHH
Confidence 78899999999999 699999987554 444333
No 117
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.031 Score=58.82 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEE
Q 014523 142 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 221 (423)
Q Consensus 142 ~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv 221 (423)
.|++.++ |..++++.+|||+||+++++|+ .+| ++.++ ++++
T Consensus 222 ~~i~k~v---G~~~Vl~~vSGgvdStV~a~Ll-------~~a--------------lg~~R---------------~~ai 262 (552)
T KOG1622|consen 222 NEIRKWV---GDYKVLVAVSGGVDSTVCAALL-------RRA--------------LGPDR---------------VHAI 262 (552)
T ss_pred HHHHHHh---cccceEEEecCCchHHHHHHHH-------HHh--------------hCCCc---------------eEEE
Confidence 4555554 4689999999999999999999 577 67666 6776
Q ss_pred EeCCCCCCHHHHHHH-HHHHHHhCCceEEEecHHHHHH
Q 014523 222 FMGSENSSQETRMRA-KKLADEIGSWHLDVSIDTVVSA 258 (423)
Q Consensus 222 ~m~s~~SS~~t~~~A-~~LA~~iG~~h~~i~Id~~v~a 258 (423)
..-.-.--...-+.- +.|.. ||++...+|-..-+-.
T Consensus 263 ~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~~f~s 299 (552)
T KOG1622|consen 263 HVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASETFLS 299 (552)
T ss_pred EecccchhhhHHHHHHHHHHH-cCCceEEeechHHHHH
Confidence 543211112222222 33555 9999999887766554
No 118
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.79 E-value=0.039 Score=53.42 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCceEEEecHH
Q 014523 231 ETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 231 ~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
...+.++..|+.||++++.+.+..
T Consensus 45 ~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 45 PNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCC
Confidence 456789999999999998887644
No 119
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=95.67 E-value=0.046 Score=56.89 Aligned_cols=71 Identities=30% Similarity=0.361 Sum_probs=52.6
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeC-CCCCCHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG-SENSSQETR 233 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~-s~~SS~~t~ 233 (423)
++++-|||||||-+++.++ .+- |.. ++.||+. ..+++++.+
T Consensus 177 k~l~LlSGGIDSPVA~~l~-------mkR---------------G~~----------------v~~v~f~~~p~~~~~a~ 218 (383)
T COG0301 177 KVLLLLSGGIDSPVAAWLM-------MKR---------------GVE----------------VIPVHFGNPPYTSEKAR 218 (383)
T ss_pred cEEEEEeCCCChHHHHHHH-------Hhc---------------CCE----------------EEEEEEcCCCCchHHHH
Confidence 3666799999999999988 232 433 7788873 456788999
Q ss_pred HHHHHHH-HHhCCce-----EEEecHHHHHHHHHHh
Q 014523 234 MRAKKLA-DEIGSWH-----LDVSIDTVVSAFLSLF 263 (423)
Q Consensus 234 ~~A~~LA-~~iG~~h-----~~i~Id~~v~a~~~~~ 263 (423)
..+..|+ ..+..++ +.+|..++++.+....
T Consensus 219 ~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~ 254 (383)
T COG0301 219 EKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKV 254 (383)
T ss_pred HHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhc
Confidence 9999999 7776554 7777777777775443
No 120
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.48 E-value=0.015 Score=55.90 Aligned_cols=60 Identities=25% Similarity=0.190 Sum_probs=41.7
Q ss_pred HhCCC--ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC
Q 014523 150 RSGAS--GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN 227 (423)
Q Consensus 150 rsg~~--g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~ 227 (423)
+.+.. +++|++|||+|||+++.|+ ..+ +..- . -.|..||
T Consensus 55 r~~id~~kiaVA~SGG~DSsas~iil-------R~~---------------g~~v---~-----------p~t~~Lp--- 95 (255)
T COG1365 55 RIKIDKPKIAVAYSGGVDSSASAIIL-------RWA---------------GFTV---D-----------PGTAILP--- 95 (255)
T ss_pred cCCCCCceEEEEecCCcchHHHHHHH-------Hhh---------------ceee---c-----------cccccCC---
Confidence 34444 6899999999999999998 233 3111 0 1344454
Q ss_pred CCHHHHHHHHHHHHHhCCceEEE
Q 014523 228 SSQETRMRAKKLADEIGSWHLDV 250 (423)
Q Consensus 228 SS~~t~~~A~~LA~~iG~~h~~i 250 (423)
.+-+..++.++.-||..+.-+
T Consensus 96 --~~ir~n~~~l~~~lg~~p~yv 116 (255)
T COG1365 96 --DHIRRNKEELETLLGEVPEYV 116 (255)
T ss_pred --HHHhHHHHHHHHHHccCHHHH
Confidence 367888999999999986544
No 121
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=95.30 E-value=0.081 Score=53.30 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=50.9
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
.+.+++.|||-||++++.|+ .+++.. +..+ +..++.-|...-++|.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa-------~kaf~~------------~~~p---------------~~vl~IDTG~~F~Et~ 65 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLA-------RKAFYP------------GPLP---------------FPLLHVDTGWKFREMI 65 (294)
T ss_pred CCcEEEEecChHHHHHHHHH-------HHHhcc------------cCCC---------------eEEEEEecCCCCHHHH
Confidence 45678899999999999998 466321 1111 5566666655567899
Q ss_pred HHHHHHHHHhCCceEEEecHHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
+...++|+.+|+.+++...++.
T Consensus 66 efrd~~a~~~gl~l~v~~~~~~ 87 (294)
T TIGR02039 66 AFRDHMVAKYGLRLIVHSNEEG 87 (294)
T ss_pred HHHHHHHHHhCCCEEEEechhh
Confidence 9999999999999998876653
No 122
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.06 E-value=0.24 Score=50.36 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=52.9
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
+...++..|||.||++++.|+ .+++.. +..+ +-.++.-|...-++|
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa-------~kaf~~------------~~~~---------------~pvl~VDTG~~FpEt 82 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLA-------MKAFRP------------TRPP---------------FPLLHVDTTWKFREM 82 (312)
T ss_pred cCCcEEEecCChHHHHHHHHH-------HHhhcc------------cCCC---------------eeEEEeCCCCCCHHH
Confidence 456789999999999999999 466321 1111 566777777778899
Q ss_pred HHHHHHHHHHhCCceEEEecHHHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v 256 (423)
.+-..++|+.+|+.+++..-.+.+
T Consensus 83 ~efrD~~a~~~gl~Liv~~~~~~~ 106 (312)
T PRK12563 83 IDFRDRRAKELGLDLVVHHNPDGI 106 (312)
T ss_pred HHHHHHHHHHhCCcEEEecChHHH
Confidence 999999999999998876544433
No 123
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=94.82 E-value=0.2 Score=47.33 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=48.0
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..++|..|||.||++++-|+. +. ..+ +..+|+-|...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~-------~~---------------~~~----------------~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVS-------KI---------------SPD----------------IPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHH-------hc---------------CCC----------------CcEEEecCCCCCHHHH
Confidence 479999999999999998882 33 221 4566888888889999
Q ss_pred HHHHHHHHHhCCceEEEec
Q 014523 234 MRAKKLADEIGSWHLDVSI 252 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~I 252 (423)
+-.+++++.+|.....+.-
T Consensus 56 efv~~~~~~~~l~i~~~~~ 74 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKP 74 (212)
T ss_pred HHHHHHHHHhCCceEEECC
Confidence 9999999999976555543
No 124
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=94.25 E-value=0.2 Score=40.05 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=16.6
Q ss_pred eEEeccCCccHHHHHHHH
Q 014523 156 FLLPLSGGADSSSVAAIV 173 (423)
Q Consensus 156 ~~l~LSGGiDSa~~A~lv 173 (423)
++|++|||.||+.++.++
T Consensus 1 ilv~~sgg~dS~~~l~~~ 18 (86)
T cd01984 1 ILVALSGGLDSSVLLHLA 18 (86)
T ss_pred CEEEeeCCHHHHHHHHHH
Confidence 589999999999999888
No 125
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=94.00 E-value=0.43 Score=46.15 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=44.0
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
...+++..|||.||++++.|+ .++ .... +-.+|.-|..--++|
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~-------~~~---------------~~~~---------------i~vv~vDTg~~fpET 67 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLL-------SSI---------------SEPM---------------IPVIFIDTLYHFPQT 67 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHH-------HHh---------------hCCC---------------CCEEEEeCCCCCHHH
Confidence 456999999999999999988 344 2111 445666666677899
Q ss_pred HHHHHHHHHHhCCc
Q 014523 233 RMRAKKLADEIGSW 246 (423)
Q Consensus 233 ~~~A~~LA~~iG~~ 246 (423)
.+-+.++++.+|..
T Consensus 68 ~e~~d~~~~~~~~~ 81 (226)
T TIGR02057 68 LTLKDELTKKYYQT 81 (226)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999999943
No 126
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=92.08 E-value=0.34 Score=49.10 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=45.4
Q ss_pred hCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCH
Q 014523 151 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 230 (423)
Q Consensus 151 sg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~ 230 (423)
++.+.++|+.|||+|+++.++-+ .+ .|++ +.|||..-.- .
T Consensus 3 ~~~~~vVLAySGgLDTscil~WL-------ke---------------qGye-----------------Viay~AnvGQ-~ 42 (412)
T KOG1706|consen 3 SSKKSVVLAYSGGLDTSCILAWL-------KE---------------QGYE-----------------VIAYLANVGQ-K 42 (412)
T ss_pred CCCceEEEEecCCcCchhhhHHH-------Hh---------------cCce-----------------EEEeeccccc-h
Confidence 34567899999999999888777 23 3655 4578886543 7
Q ss_pred HHHHHHHHHHHHhCCceEE
Q 014523 231 ETRMRAKKLADEIGSWHLD 249 (423)
Q Consensus 231 ~t~~~A~~LA~~iG~~h~~ 249 (423)
++-+.|++=|-.+|+.-..
T Consensus 43 edfe~ar~kAlk~Gakk~~ 61 (412)
T KOG1706|consen 43 EDFEEARKKALKSGAKKVV 61 (412)
T ss_pred hhHHHHHHhhhhcCceEEE
Confidence 8999999999999997533
No 127
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.59 E-value=1.2 Score=43.93 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=50.3
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..++++.|||.||++++.|+ .+++ . + +..++.-|..--++|.
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~-------~k~~--------------~-~----------------~~vif~DTg~~f~Et~ 81 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLA-------AKAF--------------P-D----------------FPVIFLDTGYHFPETY 81 (261)
T ss_pred CCeEEEecCchhHHHHHHHH-------HHhc--------------C-C----------------CcEEEEeCCCcCHHHH
Confidence 44799999999999999999 4652 1 1 3445555555678999
Q ss_pred HHHHHHHHHhCCceEEEecHHHHHHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDTVVSAF 259 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~~v~a~ 259 (423)
+-+..+++.+|+...+..-+..+..-
T Consensus 82 ~~~d~~~~~~~~~l~~~~~~~~~~~~ 107 (261)
T COG0175 82 EFRDRLAEEYGLDLKVYRPDDEVAEG 107 (261)
T ss_pred HHHHHHHHHcCCeEEEecCccchhhh
Confidence 99999999999777666655544433
No 128
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=91.22 E-value=0.2 Score=49.14 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=63.4
Q ss_pred ccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEeccc
Q 014523 3 ASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDA 81 (423)
Q Consensus 3 ~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~ 81 (423)
|||=-..-|+. -..-|++..+.++.|..|-+-|.|--+..--=.|+|||+ +=|.|||+.+.=+- ..+++|+|||+-
T Consensus 193 PSAFT~~TG~A-HWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtVva~~se~~~--~~l~~AdiDlsl 269 (295)
T KOG0807|consen 193 PSAFTIKTGEA-HWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTVVARCSERTG--PGLILADIDLSL 269 (295)
T ss_pred cchhhhcccHH-HHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhhheecCCCCC--CceEEEEccHHH
Confidence 34433344554 356788999999999999999999987543455999999 89999999886552 557899999998
Q ss_pred ccccccC
Q 014523 82 VAGFRGS 88 (423)
Q Consensus 82 vr~~R~~ 88 (423)
+.+.|..
T Consensus 270 ld~lr~~ 276 (295)
T KOG0807|consen 270 LDSLRTK 276 (295)
T ss_pred HHHHHHh
Confidence 8776654
No 129
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=89.87 E-value=0.78 Score=44.52 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.5
Q ss_pred ceEEeccCCccHHHHHHHH
Q 014523 155 GFLLPLSGGADSSSVAAIV 173 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv 173 (423)
++++..|||-||+.++..+
T Consensus 2 k~~~l~SGGKDS~~al~~a 20 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHA 20 (223)
T ss_pred cEEEEecCcHHHHHHHHHH
Confidence 3678899999999998877
No 130
>PRK06850 hypothetical protein; Provisional
Probab=88.98 E-value=1.9 Score=46.64 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHhcHHHHHHH-HHHHhCCCceEEeccCCccHHHHHHHHH
Q 014523 135 EIAFGPGCWLWD-YLRRSGASGFLLPLSGGADSSSVAAIVG 174 (423)
Q Consensus 135 ei~~~~a~~L~D-ylrrsg~~g~~l~LSGGiDSa~~A~lv~ 174 (423)
+....+..-+.+ |+. ....++||+|||=||++++.|+.
T Consensus 17 ~~~~~~i~~i~~~Y~~--~~~P~vV~fSGGKDStavL~Lv~ 55 (507)
T PRK06850 17 EPIEELIEEIQELYCA--DNRPWVIGYSGGKDSTAVLQLVW 55 (507)
T ss_pred HHHHHHHHHHHHHHhc--CCCCeEEeCCCCchHHHHHHHHH
Confidence 344444444544 332 24568999999999999999993
No 131
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=87.71 E-value=1.4 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred CCceEEeccCCccHHHHHHHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVG 174 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~ 174 (423)
...++|++|||=||++++.|+.
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~ 34 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIW 34 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHH
Confidence 3568999999999999999993
No 132
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=87.69 E-value=2.1 Score=41.59 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=41.8
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCC-----C
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS-----S 229 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~S-----S 229 (423)
+++.-+|||-||+.++.++ .+. |.+- +.-+.|...+. .
T Consensus 2 k~~aL~SGGKDS~~Al~~a-------~~~---------------G~eV---------------~~Ll~~~p~~~dS~m~H 44 (223)
T COG2102 2 KVIALYSGGKDSFYALYLA-------LEE---------------GHEV---------------VYLLTVKPENGDSYMFH 44 (223)
T ss_pred cEEEEEecCcHHHHHHHHH-------HHc---------------CCee---------------EEEEEEecCCCCeeeee
Confidence 3566789999998888777 222 4331 22233333222 1
Q ss_pred HHHHHHHHHHHHHhCCceEEEecHH
Q 014523 230 QETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 230 ~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
....+-+..+|+.+|+++....++-
T Consensus 45 ~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 45 TPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred ccchHHHHHHHHhcCCceEEEecCc
Confidence 2345688999999999999998887
No 133
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=87.10 E-value=1.6 Score=46.86 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEecc
Q 014523 14 DYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 14 ~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
.+...+.+..+.++|.+.+.+|.. |.|.|+ ++|+++++.+.|+++ +++++||+.
T Consensus 416 ~qh~~~~~~RAiEng~~vvra~n~----------G~Saiidp~G~i~~~~~~~~~~---~l~~~i~~~ 470 (505)
T PRK00302 416 YQHFQMARMRALELGRPLIRATNT----------GITAVIDPLGRIIAQLPQFTEG---VLDGTVPPT 470 (505)
T ss_pred HHHHHHHHHHHHHhCCceEEecCc----------eeeEEECCCCCEeeecCCCcee---EEEEEeccC
Confidence 356677788899999999999853 678888 999999999998774 457777764
No 134
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=87.09 E-value=0.81 Score=44.18 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=34.9
Q ss_pred ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCC-CHHH-
Q 014523 155 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS-SQET- 232 (423)
Q Consensus 155 g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~S-S~~t- 232 (423)
++++..|||-||++++..+ .+.. . +. .+.|.+=....| .-.+
T Consensus 2 k~v~l~SGGKDS~lAl~~a-------~~~~-~-----------v~-----------------~L~t~~~~~~~s~~~H~~ 45 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRA-------LRQH-E-----------VV-----------------CLLTMVPEEEDSYMFHGV 45 (218)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHT--E-----------EE-----------------EEEEEEESTTT-SSS-ST
T ss_pred cEEEEEcCcHHHHHHHHHH-------HHhC-C-----------cc-----------------EEEEeccCCCCccccccc
Confidence 4678899999999987766 2221 0 11 134433222222 1222
Q ss_pred -HHHHHHHHHHhCCceEEEecH
Q 014523 233 -RMRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 233 -~~~A~~LA~~iG~~h~~i~Id 253 (423)
.+..+..|+.||+++..+.+.
T Consensus 46 ~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 46 NIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp TGTCHHHHHHHHT--EEEEEE-
T ss_pred CHHHHHHHHHHCCCCEEEEEcc
Confidence 557788999999999998886
No 135
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=79.44 E-value=1.2 Score=44.60 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=25.2
Q ss_pred HhcCCeEEEEcCCCCCCCceEEcCCeeee
Q 014523 25 HSRGGVYMYSNQQGCDGGRLYFDGCSCVV 53 (423)
Q Consensus 25 ~k~g~~yvYaN~~G~d~~rlvfDG~S~I~ 53 (423)
.++++..+.||.+|.+ +.+.|.|+|+|+
T Consensus 237 ~eN~~~vv~~Nr~G~~-~~~~f~G~S~i~ 264 (295)
T cd07566 237 PLEGTQVVFCNRIGTE-NDTLYAGSSAVI 264 (295)
T ss_pred CCCceEEEEEeccCcc-CCceecCcccee
Confidence 4899999999999999 668899999987
No 136
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=76.91 E-value=1.7 Score=46.12 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.1
Q ss_pred CceEEeccCCccHHHHHHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVG 174 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~ 174 (423)
+.+.|-+|||+||+++|.+++
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h 271 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAH 271 (520)
T ss_pred CcEEEEecCCchHHHHHHHHH
Confidence 678899999999999999994
No 137
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=74.59 E-value=7.1 Score=40.40 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=25.2
Q ss_pred HHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHH
Q 014523 136 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG 174 (423)
Q Consensus 136 i~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~ 174 (423)
.+..--.|+..+ +..+.|++|||-||++++-|+.
T Consensus 15 A~~eRl~~if~~-----f~~VcVSFSGGKDS~lmLhL~~ 48 (407)
T COG3969 15 AAIERLEWIFNT-----FPRVCVSFSGGKDSGLMLHLVA 48 (407)
T ss_pred HHHHHHHHHHhc-----CCeEEEEecCCCchhHHHHHHH
Confidence 333344455443 6789999999999999999884
No 138
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=67.19 E-value=47 Score=35.71 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=23.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEe
Q 014523 219 YTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 251 (423)
Q Consensus 219 ~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~ 251 (423)
..+.++..+-+.++..+-.+.+..++..|..+.
T Consensus 341 ~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~ 373 (497)
T TIGR02026 341 AQFITGFENETDETFEETYRQLLDWDPDQANWL 373 (497)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 345566666677788777888888888776654
No 139
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=57.78 E-value=27 Score=32.69 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec
Q 014523 218 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 252 (423)
Q Consensus 218 v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~I 252 (423)
+..+|+-|...-++|.+-+.++++.+|+....+.-
T Consensus 19 ~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 19 VKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 55678888888899999999999999988777643
No 140
>PLN02309 5'-adenylylsulfate reductase
Probab=53.67 E-value=67 Score=34.55 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=25.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhCCceEEE
Q 014523 219 YTVFMGSENSSQETRMRAKKLADEIGSWHLDV 250 (423)
Q Consensus 219 ~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i 250 (423)
--+++-|-.--+||.+-+.++++++|+..+.+
T Consensus 137 pV~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 137 RVFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 34556666678899999999999999877666
No 141
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=52.99 E-value=69 Score=34.55 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=25.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhCCceEEE
Q 014523 219 YTVFMGSENSSQETRMRAKKLADEIGSWHLDV 250 (423)
Q Consensus 219 ~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i 250 (423)
--+++-|-.--+||.+-+.++++.+|+..+.+
T Consensus 142 pV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 142 RVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 34556666667899999999999999887765
No 142
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=39.36 E-value=37 Score=33.22 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=28.5
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCC--ceEEeccCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 163 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~--g~~l~LSGG 163 (423)
..++++....+.++.+++.+.-.. .+.|+||||
T Consensus 7 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgG 41 (238)
T COG0363 7 EDAEELAKAAAEIIADKLQAAKAERGRAVLALSGG 41 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCC
Confidence 467889999999999999887544 699999999
No 143
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=37.92 E-value=40 Score=32.61 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=32.2
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHH
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIV 173 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv 173 (423)
...+|+....+..+.+++.+.+ .+.|+||||-.-....-.+
T Consensus 7 ~~~~e~~~~~a~~i~~~i~~~~--~~~l~lsgG~tp~~~y~~L 47 (239)
T PRK12358 7 KDYEEMSRVAAHHLLGYMSKTK--RVNLAITAGSTPKGMYEYL 47 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHhCC--CeEEEECCCCCHHHHHHHH
Confidence 4678999999999999998853 6999999996665544433
No 144
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=34.86 E-value=45 Score=35.83 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccc
Q 014523 314 ARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRF 358 (423)
Q Consensus 314 ~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~ 358 (423)
+.++.+|+..|+|+|+.+.-+ ++|-||---+-.|.|||.
T Consensus 111 ~~l~eee~~~klk~Fl~~lDR------Ti~DsF~HaNIGP~dt~~ 149 (487)
T PF11230_consen 111 QGLDEEEAYKKLKLFLIHLDR------TIPDSFCHANIGPEDTRA 149 (487)
T ss_pred cCCCHHHHHHHHHHHHHHhhc------cCcchhhccCCCCcccHH
Confidence 357899999999999988765 799999666789999986
No 145
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=32.56 E-value=1.1e+02 Score=30.22 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=42.7
Q ss_pred HHHHHHHhCCC-ceEEecc--CCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEE
Q 014523 144 LWDYLRRSGAS-GFLLPLS--GGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYT 220 (423)
Q Consensus 144 L~Dylrrsg~~-g~~l~LS--GGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~t 220 (423)
|++.|.. |+. +++|.=. +|.|+..||.+++ .++++ ++++ +
T Consensus 73 lr~aLAm-GaD~avli~d~~~~g~D~~~tA~~La-------~ai~~-----------~~~D---------------L--- 115 (256)
T PRK03359 73 RKDVLSR-GPDELIVVIDDQFEQALPQQTASALA-------AAAQK-----------AGFD---------------L--- 115 (256)
T ss_pred HHHHHHc-CCCEEEEEecCcccCcCHHHHHHHHH-------HHHHH-----------hCCC---------------E---
Confidence 4444444 555 5565422 5789999999984 55432 4433 2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCceEEE
Q 014523 221 VFMGSENSSQETRMRAKKLADEIGSWHLDV 250 (423)
Q Consensus 221 v~m~s~~SS~~t~~~A~~LA~~iG~~h~~i 250 (423)
+..|...+...|-.-.-.||+.||.++...
T Consensus 116 Vl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~ 145 (256)
T PRK03359 116 ILCGDGSSDLYAQQVGLLVGEILNIPAING 145 (256)
T ss_pred EEEcCccccCCCCcHHHHHHHHhCCCceee
Confidence 333433334456667888999999997543
No 146
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=31.01 E-value=64 Score=31.13 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=27.0
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCCc
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGA 164 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGi 164 (423)
...+++....+..|.+.+++.+ .+.|+||||-
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~--~~~l~lsgGs 38 (232)
T PRK09762 7 ENYTALSERASEYLLAVIRSKP--DAVICLATGA 38 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC--CeEEEECCCC
Confidence 4678899999999999998854 6899999994
No 147
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=30.92 E-value=1.6e+02 Score=28.13 Aligned_cols=53 Identities=15% Similarity=0.035 Sum_probs=33.9
Q ss_pred CeEEEEEeCCCCCCHHHHHH-HHHHHHHhCCceEEEecHHHHHHHHHHhhhhcC
Q 014523 216 RIFYTVFMGSENSSQETRMR-AKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 268 (423)
Q Consensus 216 ~~v~tv~m~s~~SS~~t~~~-A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~~g 268 (423)
+.++-++=+..+++.-+-.. |..+|++.|+..++|-|...-+..+..+...+|
T Consensus 113 kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~d~~~l~~iA~~tg 166 (191)
T cd01455 113 AIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSLSDEADQLQRELPA 166 (191)
T ss_pred cEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCCCHHHHHHHHhCCC
Confidence 45555555554566656666 689999999999999996533333444444443
No 148
>PRK04447 hypothetical protein; Provisional
Probab=29.79 E-value=2.3e+02 Score=29.53 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=76.2
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
..+..|-|-||.=++++|+++. + ++++. +.. + -+-+|-|.....|+
T Consensus 232 ~~~~pVlLdGG~qm~Aaalla~--------~--------------i~p~~----~~~---~--~i~TT~wv~~D~~~--- 277 (351)
T PRK04447 232 SSGGPVLLAGGTQMLAVAALIK--------A--------------IGKED----LEN---I--AIATTRWVAEDKSA--- 277 (351)
T ss_pred hcCCCEEEeChHHHHHHHHHHH--------H--------------hCccc----cCC---e--EEEEeeeeecCCCc---
Confidence 3566677889988888888883 3 22220 000 0 13467777654443
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhcCCCCccccchhhcCCCchhhhheeeeeeecCCChHHHHHHHHHhh
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRW 312 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~~g~~p~f~tDE~dmGmtY~~ld~~~rlr~~~~~gp~~m~~~l~~~w 312 (423)
+-+.|++.||++.... .|.|. ...|..|..|.+-...+|.|-=.+.-....
T Consensus 278 --~~~~l~~~i~~~~~~~-------------------~~~F~------~s~~~~L~~Ye~G~vKEGvGaGg~~~~a~~-- 328 (351)
T PRK04447 278 --DFKGLAEQIGVPLLAS-------------------DLDFS------NSKHPGLRAYERGYVKEGVGAGGAALLALL-- 328 (351)
T ss_pred --CHHHHHHHhCCceEec-------------------CCCCc------cCCCHHHHHHcCCccccCcCHHHHHHHHHH--
Confidence 4567888888443222 34442 256889999999999999888776633222
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 014523 313 GARLTPSEVAEKVKHFFKYYS 333 (423)
Q Consensus 313 ~~~~~~~ei~~kvk~Ff~~y~ 333 (423)
..+++++|.++|+.+|.++.
T Consensus 329 -~G~~~~~~~~~ie~~~~~~~ 348 (351)
T PRK04447 329 -NGLSPEELLEAIEELYERLL 348 (351)
T ss_pred -hCCCHHHHHHHHHHHHHHHh
Confidence 35789999999999988754
No 149
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=28.74 E-value=80 Score=30.47 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=25.0
Q ss_pred CCHHHHHhcHHHHHHHHHHHh--CCCceEEeccCCc
Q 014523 131 SPEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGA 164 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrs--g~~g~~l~LSGGi 164 (423)
...+|+....+..+-+.+++. .-+.+.|+||||-
T Consensus 3 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGGs 38 (233)
T TIGR01198 3 SNSAELAEALAERIATKLQTALAERGQFSLALSGGR 38 (233)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCc
Confidence 356778888888887777662 2346899999993
No 150
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=28.25 E-value=1e+02 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.7
Q ss_pred EEEEeCCCCCCHHHHH---HHHHHHHHhCCceEEEecHH
Q 014523 219 YTVFMGSENSSQETRM---RAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 219 ~tv~m~s~~SS~~t~~---~A~~LA~~iG~~h~~i~Id~ 254 (423)
+.+|+.|-.++.++++ +.+.|-+..|+.+.++||+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 4577777767777777 56667788899999999964
No 151
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=27.61 E-value=3.2e+02 Score=31.86 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=50.9
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCC---C-
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS---S- 229 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~S---S- 229 (423)
..++|++||+..|.-+ +..-+|++-+ +... ++.+|.-+..+ +
T Consensus 249 e~ilvcI~~~~~~e~l---iR~a~RlA~~---------------~~a~----------------~~av~v~~~~~~~~~~ 294 (890)
T COG2205 249 ERILVCISGSPGSEKL---IRRAARLASR---------------LHAK----------------WTAVYVETPELHRLSE 294 (890)
T ss_pred ceEEEEECCCCchHHH---HHHHHHHHHH---------------hCCC----------------eEEEEEeccccccccH
Confidence 4699999999998653 3322333222 2222 78888766553 2
Q ss_pred --HHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHh
Q 014523 230 --QETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 263 (423)
Q Consensus 230 --~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~ 263 (423)
......+.+||++||....++.=+++.+++...-
T Consensus 295 ~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ya 330 (890)
T COG2205 295 KEARRLHENLRLAEELGAEIVTLYGGDVAKAIARYA 330 (890)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHHHH
Confidence 2344578899999999999998777777765543
No 152
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=26.66 E-value=1.3e+02 Score=31.22 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=46.5
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..+.+|-|||-||++.|..+ +++.. |-.+.... .+..++=+...--....
T Consensus 52 e~v~igasGgkdstvlA~v~--------~~Ln~----------r~~~g~~l------------~Lls~degi~gyrd~sl 101 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVL--------DALNE----------RHDYGLRL------------FLLSIDEGIRGYRDDSL 101 (347)
T ss_pred CccccccccchhHHHHHHHH--------HHhhh----------hcCCCcee------------eeeeccccccceeccHH
Confidence 35889999999999999877 55321 00111101 14455555443333344
Q ss_pred HHHHHHHHHhCCceEEEecHHHHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDTVVS 257 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~~v~ 257 (423)
..-+....+.|++..++...+++.
T Consensus 102 ~avkrn~~~~~lPL~ivs~~dl~~ 125 (347)
T KOG2840|consen 102 EAVKRNGVQYGLPLCIVSYKDLYG 125 (347)
T ss_pred HHHHHhhhhcCCceEEecHHHHhc
Confidence 555667888999999998888777
No 153
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=26.48 E-value=1.9e+02 Score=25.43 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=33.3
Q ss_pred hhHHHHHHHhhccC--CCCCCCchhhh-cCCeEEEEEeCCCCCCHHH----HHHHHHHHHHhCCceEEEe
Q 014523 189 EQVKADAIRIGRYA--NGEFPTESREF-AKRIFYTVFMGSENSSQET----RMRAKKLADEIGSWHLDVS 251 (423)
Q Consensus 189 ~~v~~d~~~ig~~~--~~~~p~~~~el-~~~~v~tv~m~s~~SS~~t----~~~A~~LA~~iG~~h~~i~ 251 (423)
.++.++++++.... .+...+++-.| |+.++|++.+...+.+... ...+.++|++.|+.-.-++
T Consensus 43 ~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p~~~~~~~~~l~~~~~~~L~~a~~~~~~SIAfP 112 (137)
T cd02903 43 PELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLPNWSNGALKILKDIVSECLEKCEELSYTSISFP 112 (137)
T ss_pred HHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHCCCcEEEEC
Confidence 35556666555433 23445555567 8888888876533221111 2345555666665544443
No 154
>PRK10490 sensor protein KdpD; Provisional
Probab=26.13 E-value=5.9e+02 Score=29.64 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=31.8
Q ss_pred EEEEEeCCCC---CCHHHH---HHHHHHHHHhCCceEEEecHHHHHHHHHHh
Q 014523 218 FYTVFMGSEN---SSQETR---MRAKKLADEIGSWHLDVSIDTVVSAFLSLF 263 (423)
Q Consensus 218 v~tv~m~s~~---SS~~t~---~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~ 263 (423)
++.+|--+.+ -+.+.+ .+..+||+++|+....+.=+++.+++.+.-
T Consensus 281 ~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~i~~~A 332 (895)
T PRK10490 281 WHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVLRYA 332 (895)
T ss_pred EEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence 7777776543 223333 355679999999988887777777776554
No 155
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=26.07 E-value=79 Score=30.51 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCC---CceEEeccCCccH
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGA---SGFLLPLSGGADS 166 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~---~g~~l~LSGGiDS 166 (423)
...+++....+..|-..+++.-. .+.+||||||---
T Consensus 7 ~~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T~ 45 (261)
T PRK00443 7 KTAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSSP 45 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCCH
Confidence 46778999999999999885432 4578999999653
No 156
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.62 E-value=4.2e+02 Score=28.10 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCch--h---HHHHHHHhhccCCCCCCCchhhhcCCe
Q 014523 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDE--Q---VKADAIRIGRYANGEFPTESREFAKRI 217 (423)
Q Consensus 143 ~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~--~---v~~d~~~ig~~~~~~~p~~~~el~~~~ 217 (423)
.+.+.|+++|+..+.+|+=.|-|..+- .+++|.. + .++.+++.|-. .
T Consensus 288 e~l~~l~~aG~~~v~iGiES~s~~~L~-------------~~~K~~~~~~~~~~i~~~~~~Gi~---------------v 339 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGYESGDQQILK-------------NIKKGLTVEIARRFTRDCHKLGIK---------------V 339 (472)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHH-------------HhcCCCCHHHHHHHHHHHHHCCCe---------------E
Confidence 355677888888887777666555442 2222221 1 22223222211 1
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec
Q 014523 218 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 252 (423)
Q Consensus 218 v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~I 252 (423)
...+.++..+-+.++..+-.+.+.+++..+..+.+
T Consensus 340 ~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~ 374 (472)
T TIGR03471 340 HGTFILGLPGETRETIRKTIDFAKELNPHTIQVSL 374 (472)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeee
Confidence 23344455566777777777888888877655543
No 157
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=24.52 E-value=91 Score=30.96 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=26.4
Q ss_pred CCCHHHHHhcHHHHHHHHHHHhCCCc--eEEeccCC
Q 014523 130 HSPEEEIAFGPGCWLWDYLRRSGASG--FLLPLSGG 163 (423)
Q Consensus 130 ~~~~eei~~~~a~~L~Dylrrsg~~g--~~l~LSGG 163 (423)
....+|+..+++.++.+-..++-.++ |-|+||||
T Consensus 14 ~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGG 49 (252)
T KOG3147|consen 14 FSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGG 49 (252)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 35678888888888887776664444 89999999
No 158
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=24.48 E-value=38 Score=34.39 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCCceEEcC-Ceeee-eCCceeeeeCCCccCCcceEEEEEecccccccccC
Q 014523 19 AFISATHSRGGVYMYSNQQGCDGGRLYFDG-CSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 88 (423)
Q Consensus 19 Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG-~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDle~vr~~R~~ 88 (423)
+.+..+-.+-.....+|..+-+++.....| ++++. +.|+||+...-=+ +++++++|++.+.+.|..
T Consensus 212 ~~~~~a~~n~~~v~~~s~~~~~s~~y~~~gshs~~~~p~gkvl~a~~~~~----e~~~a~~d~~~~~~~rq~ 279 (298)
T KOG0806|consen 212 LMRARANDNAANVHAPSPARTGSGIYAPRGSHSIMVNPTGKVLAAAVEKE----EIIYADVDPSAIASRRQG 279 (298)
T ss_pred HHhCCcccceeeeeccCcCcCCceeeecCCcceeecCCcceEeeeccCCC----ccccccCCHHHHHHHhcc
Confidence 344444555666777777777767777888 99998 8999998865322 367899999988665543
No 159
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=24.10 E-value=1.2e+02 Score=25.38 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=29.5
Q ss_pred ccccccHHHHHH---HHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeeeeCCce
Q 014523 7 HHQLRKLDYRIR---AFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDM 58 (423)
Q Consensus 7 h~~lgK~~~R~~---Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~~nG~l 58 (423)
||.||+.+-|.. ++.....+++.-+-| +||++-|.+.. .+|.|
T Consensus 9 ~H~Lg~~eAr~~~e~~a~~l~~~~~~e~~W------~GD~l~F~~~g---v~G~l 54 (91)
T TIGR02610 9 DHSLGPAAARAKAEDLARKLTDRYGLASHW------EGDTLRIARSG---VDGAV 54 (91)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCEeEE------eCCEEEEEEee---eeEEE
Confidence 789999887743 666667777765555 55788888752 55555
No 160
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=23.66 E-value=70 Score=30.11 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=23.6
Q ss_pred HHHhcHHHHHHHHHHHhCCCceEEeccCCcc
Q 014523 135 EIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 165 (423)
Q Consensus 135 ei~~~~a~~L~Dylrrsg~~g~~l~LSGGiD 165 (423)
++....+..|.+++++. .++.|+||||--
T Consensus 2 ~~~~~~a~~l~~~i~~~--~~~~i~lsgG~T 30 (232)
T cd01399 2 EMSEAAAELIAELIREK--PPAVLGLATGST 30 (232)
T ss_pred hHHHHHHHHHHHHHHhC--CCcEEEEcCCCC
Confidence 56777888888888875 478999999954
No 161
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.96 E-value=3.3e+02 Score=26.71 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHH
Q 014523 144 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKE 183 (423)
Q Consensus 144 L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a 183 (423)
+.+|+-..|..|++++-|.|==.+++..==..+.+.++++
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~ 66 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEA 66 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH
Confidence 3477778899999998887755555544333344444444
No 162
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=22.48 E-value=76 Score=31.76 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCC-------------------CceEEcCCeeee-eCCceeeeeCCCccCCcceEE
Q 014523 15 YRIRAFISATHSRGGVYMYSNQQGCDG-------------------GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVV 74 (423)
Q Consensus 15 ~R~~Li~~~s~k~g~~yvYaN~~G~d~-------------------~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~ 74 (423)
....-++..+.+-+|-.+-|||.=-+. |..+-.|+|.|+ +-|+|+| +|.|.-+. +++
T Consensus 209 ~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~Vla-gP~~~~Eg--L~t 285 (337)
T KOG0805|consen 209 EWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLA-GPNFESEG--LIT 285 (337)
T ss_pred HHHHhhhheeecCceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCcEEEccccceec-CCCcCccc--eEE
Confidence 344455555556666666666532111 567788999999 8899986 57776542 479
Q ss_pred EEEecccccc
Q 014523 75 AQVDLDAVAG 84 (423)
Q Consensus 75 a~vDle~vr~ 84 (423)
|++||.++..
T Consensus 286 adldl~dIA~ 295 (337)
T KOG0805|consen 286 ADLDLGDIAR 295 (337)
T ss_pred Eeccchhhhh
Confidence 9999998863
No 163
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=22.40 E-value=1.7e+02 Score=24.13 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=32.3
Q ss_pred ccccccHHHHHH---HHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeeeeCCcee
Q 014523 7 HHQLRKLDYRIR---AFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMI 59 (423)
Q Consensus 7 h~~lgK~~~R~~---Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~~nG~lv 59 (423)
||.||+.+-|.. ++.....+++.-+-|. ||++-|.|.. .+|.|-
T Consensus 6 ~H~Lg~~eAr~~~~~~~~~l~~~~~~~~~W~------gd~l~f~~~g---v~G~l~ 52 (87)
T PF09650_consen 6 PHSLGREEARRRAEELAEKLAEEYGVECTWE------GDRLSFSGQG---VDGTLD 52 (87)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCEEEEE------cCEEEEEeCC---ceEEEE
Confidence 688999887643 6777778888877776 5788888754 366653
No 164
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=21.82 E-value=1.2e+02 Score=29.53 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCHHHHHhcHHHHHHHHHHH-h--CCCceEEeccCCccHHHH
Q 014523 131 SPEEEIAFGPGCWLWDYLRR-S--GASGFLLPLSGGADSSSV 169 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrr-s--g~~g~~l~LSGGiDSa~~ 169 (423)
...+|+....+..+-+.+++ . .-..+.|+||||-.-.-.
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP~~~ 48 (253)
T PTZ00285 7 EDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPT 48 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCHHHH
Confidence 46788999999999999987 4 234699999999665333
No 165
>COG4703 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=41 Score=27.02 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=26.5
Q ss_pred CCCCCCCccccchhhccCCCCCcchhhHHHHHHhh
Q 014523 349 ESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 383 (423)
Q Consensus 349 e~yspDdnr~d~r~fly~~~~~~~f~~id~~~~~~ 383 (423)
-+||+|++=|-||-|=-+. .++|..||-..-++
T Consensus 37 V~ys~~~e~F~lr~~~~~e--~y~FD~IDlvaiEI 69 (74)
T COG4703 37 VKYSEDNETFELRDVEDRE--KYPFDDIDLVAIEI 69 (74)
T ss_pred EEecCCCceEEEEEcccCc--cCccccccchhHHH
Confidence 4799999999999876555 59999999765543
No 166
>PLN02360 probable 6-phosphogluconolactonase
Probab=21.42 E-value=1.3e+02 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCHHHHHhcHHHHHHHHHHHh--CCCceEEeccCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 163 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrs--g~~g~~l~LSGG 163 (423)
...+|+....+..+.+.++.. ....+.|+||||
T Consensus 17 ~~~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGG 51 (268)
T PLN02360 17 ENLDELSTDLAEYIAELSEASVKERGVFAIALSGG 51 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 467888888898888888763 334589999999
No 167
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=21.41 E-value=99 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccc
Q 014523 314 ARLTPSEVAEKVKHFFKYYSINRHK 338 (423)
Q Consensus 314 ~~~~~~ei~~kvk~Ff~~y~~nqhK 338 (423)
..++..|+.+||++.-+.|..+..|
T Consensus 47 ~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 47 FDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999998888
No 168
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=21.01 E-value=71 Score=34.08 Aligned_cols=50 Identities=30% Similarity=0.568 Sum_probs=0.0
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccccchhhccC
Q 014523 308 LCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYN 366 (423)
Q Consensus 308 l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~d~r~fly~ 366 (423)
|..-|+.+ +|++++.-+.|..++|.. +||.+..- +-.||. =-|.=||.||
T Consensus 296 LRYfW~~r-tPe~~a~Dl~r~i~~y~~-~w~~~~~~----liGySf---GADvlP~~~n 345 (456)
T COG3946 296 LRYFWSER-TPEQIAADLSRLIRFYAR-RWGAKRVL----LIGYSF---GADVLPFAYN 345 (456)
T ss_pred hhhhhccC-CHHHHHHHHHHHHHHHHH-hhCcceEE----EEeecc---cchhhHHHHH
No 169
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=20.83 E-value=2.8e+02 Score=30.05 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=65.8
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCch
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 210 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~ 210 (423)
-|.+|.+ .-|-+.-.+..-.=|++|---|.+==.- -+....-.++|++.++.++..
T Consensus 127 IPF~eAA---eiGT~KVI~dHSTIGiVVTTDGSi~dip------------Re~Y~eAEervI~ELk~igKP--------- 182 (492)
T PF09547_consen 127 IPFEEAA---EIGTRKVITDHSTIGIVVTTDGSITDIP------------RENYVEAEERVIEELKEIGKP--------- 182 (492)
T ss_pred CCHHHHH---hhcccceeccCCceeEEEecCCCccCCC------------hHHHHHHHHHHHHHHHHhCCC---------
Confidence 4555443 3455555555556688887766542111 122222346888899888743
Q ss_pred hhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhh
Q 014523 211 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT 265 (423)
Q Consensus 211 ~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~~~~ 265 (423)
|.-+.=.+.-.|++|++-|.+|.+..|++...+|+..+-+. +..+++.
T Consensus 183 -------FvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 183 -------FVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred -------EEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 55444334446889999999999999999999998876553 2344443
No 170
>PRK12342 hypothetical protein; Provisional
Probab=20.59 E-value=2.3e+02 Score=28.08 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCC-ceEEec--cCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCC
Q 014523 152 GAS-GFLLPL--SGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS 228 (423)
Q Consensus 152 g~~-g~~l~L--SGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~S 228 (423)
|+. +++|.= =+|.|+.+||.+++ .+++. ++++ + +..|...+
T Consensus 77 GaD~avli~d~~~~g~D~~ata~~La-------~~i~~-----------~~~D---------------L---Vl~G~~s~ 120 (254)
T PRK12342 77 GPHSLYLVQDAQLEHALPLDTAKALA-------AAIEK-----------IGFD---------------L---LLFGEGSG 120 (254)
T ss_pred CCCEEEEEecCccCCCCHHHHHHHHH-------HHHHH-----------hCCC---------------E---EEEcCCcc
Confidence 544 566641 25789999999884 55432 4433 2 23333333
Q ss_pred CHHHHHHHHHHHHHhCCceEE
Q 014523 229 SQETRMRAKKLADEIGSWHLD 249 (423)
Q Consensus 229 S~~t~~~A~~LA~~iG~~h~~ 249 (423)
...|-.-.-.||+.||.++..
T Consensus 121 D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 121 DLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred cCCCCCHHHHHHHHhCCCcEe
Confidence 345666788999999999744
No 171
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=20.55 E-value=1.3e+02 Score=29.43 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCHHHHHhcHHHHHHHHHHH-hC--CCceEEeccCCccHHHHHHHH
Q 014523 131 SPEEEIAFGPGCWLWDYLRR-SG--ASGFLLPLSGGADSSSVAAIV 173 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrr-sg--~~g~~l~LSGGiDSa~~A~lv 173 (423)
...+|+....+..+-+.+++ .. ...|.|+||||---..+.-.+
T Consensus 7 ~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP~~~y~~L 52 (259)
T TIGR00502 7 QTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIGTYKQL 52 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCChHHHHHHH
Confidence 46788999999999999998 43 346999999996655444433
Done!