Query 014523
Match_columns 423
No_of_seqs 412 out of 2198
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 100.0 2.5E-64 8.5E-69 543.7 28.9 336 1-385 187-626 (634)
2 3sdb_A Glutamine-dependent NAD 100.0 7.2E-50 2.5E-54 434.0 25.1 324 1-362 199-660 (680)
3 4f4h_A Glutamine dependent NAD 100.0 2.1E-49 7.2E-54 422.4 24.8 263 1-354 190-551 (565)
4 3n05_A NH(3)-dependent NAD(+) 100.0 1.6E-40 5.3E-45 355.4 23.6 298 1-371 185-581 (590)
5 1wxi_A NH(3)-dependent NAD(+) 99.9 1.8E-25 6E-30 218.7 13.4 104 131-264 18-123 (275)
6 1kqp_A NAD+ synthase, NH(3)-de 99.9 9.3E-25 3.2E-29 212.9 14.1 103 131-265 17-120 (271)
7 1xng_A NH(3)-dependent NAD(+) 99.9 1E-24 3.4E-29 211.6 14.1 176 132-356 4-264 (268)
8 3q4g_A NH(3)-dependent NAD(+) 99.9 3.4E-24 1.2E-28 210.2 13.0 101 131-261 19-120 (279)
9 3p52_A NH(3)-dependent NAD(+) 99.9 1.1E-23 3.8E-28 203.2 10.5 163 131-346 4-247 (249)
10 2e18_A NH(3)-dependent NAD(+) 99.9 2.8E-23 9.5E-28 200.0 11.0 168 132-352 5-254 (257)
11 3dpi_A NAD+ synthetase; ssgcid 99.9 1.2E-22 4.2E-27 199.6 13.2 101 133-264 26-127 (285)
12 3fiu_A NH(3)-dependent NAD(+) 99.9 3.5E-22 1.2E-26 192.6 14.1 94 132-263 8-101 (249)
13 2hma_A Probable tRNA (5-methyl 98.9 3.1E-09 1.1E-13 107.9 9.2 111 147-295 3-137 (376)
14 2vxo_A GMP synthase [glutamine 98.9 4.8E-09 1.7E-13 114.3 10.3 88 132-258 222-309 (697)
15 2der_A TRNA-specific 2-thiouri 98.7 3E-08 1E-12 100.9 10.7 104 153-294 17-145 (380)
16 1gpm_A GMP synthetase, XMP ami 98.7 4.2E-08 1.4E-12 103.6 9.5 84 133-256 210-294 (525)
17 3hkx_A Amidase; alpha-beta-BET 98.7 2.3E-08 7.9E-13 96.9 6.9 81 1-88 186-267 (283)
18 2dpl_A GMP synthetase, GMP syn 98.7 7.4E-08 2.5E-12 95.1 10.3 83 134-256 4-87 (308)
19 3p8k_A Hydrolase, carbon-nitro 98.6 3.8E-08 1.3E-12 95.3 6.2 80 1-87 187-267 (281)
20 3ivz_A Nitrilase; alpha-beta s 98.6 2.5E-08 8.4E-13 95.3 4.8 78 1-87 167-245 (262)
21 2uxy_A Aliphatic amidase; nitr 98.6 5.5E-08 1.9E-12 97.0 6.3 80 1-86 187-267 (341)
22 2ywb_A GMP synthase [glutamine 98.5 3.5E-07 1.2E-11 96.0 11.4 83 133-256 192-274 (503)
23 2pg3_A Queuosine biosynthesis 98.5 2.2E-07 7.6E-12 87.1 8.6 66 152-255 1-67 (232)
24 3uow_A GMP synthetase; structu 98.5 3.2E-07 1.1E-11 97.6 10.0 75 146-257 247-324 (556)
25 2e11_A Hydrolase; dimethylarse 98.5 7.4E-08 2.5E-12 91.9 4.4 81 1-87 170-251 (266)
26 3bl5_A Queuosine biosynthesis 98.4 3.7E-07 1.3E-11 84.1 7.3 64 154-255 4-67 (219)
27 1uf5_A N-carbamyl-D-amino acid 98.3 6.9E-07 2.4E-11 86.5 7.9 83 2-88 196-284 (303)
28 2dyu_A Formamidase; AMIF, CEK, 98.3 3.3E-07 1.1E-11 91.1 5.3 82 1-88 187-269 (334)
29 2w1v_A Nitrilase-2, nitrilase 98.3 4E-07 1.4E-11 87.4 5.6 83 1-88 174-257 (276)
30 3tqi_A GMP synthase [glutamine 98.3 9.5E-07 3.2E-11 93.3 8.7 82 135-256 215-297 (527)
31 1vl2_A Argininosuccinate synth 98.2 1.3E-06 4.4E-11 90.0 7.3 99 154-292 15-131 (421)
32 1jgt_A Beta-lactam synthetase; 98.2 3E-06 1E-10 89.2 9.6 84 131-254 217-302 (513)
33 1f89_A 32.5 kDa protein YLR351 98.2 1.1E-06 3.7E-11 84.9 5.5 82 1-87 190-272 (291)
34 3k32_A Uncharacterized protein 98.2 1.7E-06 5.7E-11 80.1 6.3 64 153-256 6-69 (203)
35 1q15_A CARA; CMPR, (2S,5S)-5-c 98.1 8.5E-06 2.9E-10 85.5 9.5 90 131-260 214-307 (503)
36 1ems_A Nitfhit, NIT-fragIle hi 98.1 2E-06 6.7E-11 88.2 4.5 83 1-88 190-273 (440)
37 2c5s_A THII, probable thiamine 98.0 9.6E-06 3.3E-10 83.1 8.9 100 154-291 188-300 (413)
38 2vhh_A CG3027-PA; hydrolase; 2 98.0 3.3E-06 1.1E-10 86.2 5.2 83 1-87 255-353 (405)
39 1kor_A Argininosuccinate synth 98.0 7.2E-06 2.5E-10 83.9 7.5 64 154-256 1-65 (400)
40 1sur_A PAPS reductase; assimil 98.0 1.7E-05 5.7E-10 73.5 9.1 64 154-255 45-108 (215)
41 1ct9_A Asparagine synthetase B 98.0 2.5E-05 8.5E-10 82.9 10.4 75 154-254 227-301 (553)
42 1wy5_A TILS, hypothetical UPF0 97.9 1.3E-05 4.4E-10 79.0 7.6 86 136-254 7-94 (317)
43 1k92_A Argininosuccinate synth 97.9 1.1E-05 3.9E-10 83.7 6.4 100 154-291 11-131 (455)
44 2nz2_A Argininosuccinate synth 97.8 1.8E-05 6.3E-10 81.2 6.9 98 154-291 6-121 (413)
45 3rjz_A N-type ATP pyrophosphat 97.8 2.7E-05 9.2E-10 74.4 5.9 66 152-255 3-74 (237)
46 3a2k_A TRNA(Ile)-lysidine synt 97.7 9.7E-05 3.3E-09 76.6 9.0 74 146-253 7-87 (464)
47 1vbk_A Hypothetical protein PH 97.6 7E-05 2.4E-09 73.9 7.0 79 154-292 180-266 (307)
48 2o8v_A Phosphoadenosine phosph 97.5 0.00021 7.3E-09 68.1 8.8 63 154-254 46-108 (252)
49 1ni5_A Putative cell cycle pro 97.4 0.00031 1E-08 72.3 8.2 76 144-254 6-83 (433)
50 2wsi_A FAD synthetase; transfe 97.1 0.0012 4E-08 65.0 8.2 95 143-253 41-137 (306)
51 1zun_A Sulfate adenylyltransfe 97.0 0.003 1E-07 62.7 10.4 80 140-255 35-114 (325)
52 2oq2_A Phosphoadenosine phosph 96.9 0.0023 7.8E-08 61.3 8.6 73 144-253 34-110 (261)
53 2goy_A Adenosine phosphosulfat 96.4 0.013 4.5E-07 56.4 9.8 62 154-254 55-116 (275)
54 3fwk_A FMN adenylyltransferase 94.1 0.13 4.3E-06 50.8 8.2 101 134-251 37-140 (308)
55 2v79_A DNA replication protein 40.8 16 0.00056 31.1 2.9 87 278-387 26-117 (135)
56 1fs5_A Glucosamine-6-phosphate 31.4 45 0.0015 31.0 4.6 34 131-164 7-43 (266)
57 2bkx_A Glucosamine-6-phosphate 25.2 61 0.0021 29.5 4.2 31 131-163 7-37 (242)
58 1y89_A DEVB protein; structura 24.9 50 0.0017 30.4 3.5 31 131-163 8-38 (238)
59 1u6t_A SH3 domain-binding glut 23.0 1.2E+02 0.004 25.5 5.2 35 219-253 2-39 (121)
60 3oa3_A Aldolase; structural ge 22.9 3.4E+02 0.012 26.1 9.1 88 146-251 103-208 (288)
61 1ne7_A Glucosamine-6-phosphate 22.6 77 0.0026 30.0 4.5 33 131-163 7-42 (289)
62 3hn6_A Glucosamine-6-phosphate 21.9 79 0.0027 30.3 4.4 35 131-165 28-65 (289)
63 3css_A 6-phosphogluconolactona 20.3 88 0.003 29.3 4.3 35 131-165 12-48 (267)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=2.5e-64 Score=543.66 Aligned_cols=336 Identities=26% Similarity=0.390 Sum_probs=288.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeeeeCCceeeeeCCCccCCcceEEEEEecc
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLD 80 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~~nG~lvaq~~qFs~~dv~v~~a~vDle 80 (423)
+|+||||+..||.+.|..|++.++.+++++|+|||++|+++++++|||+|+|+++|+|++++++|++++.++++++||++
T Consensus 187 ~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~p~G~vla~~~~f~~~~~~vi~a~iDl~ 266 (634)
T 3ilv_A 187 LNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMIYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATD 266 (634)
T ss_dssp EEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCEEECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC-
T ss_pred EEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceEEcceEEEEcCCeEEEECCCCCCCCceEEEEEEEhH
Confidence 58999999999999999999999999999999999999998899999999999999999999999976788999999999
Q ss_pred cccccccCCCchhhhhhccccceeeEEeecccCccccccCCCCCCcCCCCCCHHHHHhcHHHHHHHHHHHhCCCceEEec
Q 014523 81 AVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPL 160 (423)
Q Consensus 81 ~vr~~R~~~~s~~~~a~~~~~~~~v~~~~~l~~~~~~~~~p~~p~~~~~~~~~eei~~~~a~~L~Dylrrsg~~g~~l~L 160 (423)
.++..|.+ + . ...+.++|||+.+++|||||||+++|.+|++|||
T Consensus 267 ~~~~~R~~---~-------------------~--------------~~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlgl 310 (634)
T 3ilv_A 267 SAETPETV---L-------------------T--------------QDDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSL 310 (634)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred HhHHHHhc---C-------------------C--------------CCCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 88755531 0 0 0023578999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH-----HhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHH
Q 014523 161 SGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAI-----RIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 235 (423)
Q Consensus 161 SGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~-----~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~ 235 (423)
|||+|||++|+||++||+++++++ |+++|+.+++ ++......+.|++++++|+..++|||||+.+|+.+++++
T Consensus 311 SGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~d 388 (634)
T 3ilv_A 311 SGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTS 388 (634)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHh--CchhhhhhhhcccccccccccccccccchhHhhhheeeeeecCCCCCCHHHHHH
Confidence 999999999999999999999997 8899999987 344333446788899999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEecHHHHHHHHHHhhhhcCCCCccc-----------------------------------------
Q 014523 236 AKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK----------------------------------------- 274 (423)
Q Consensus 236 A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~~g~~p~f~----------------------------------------- 274 (423)
|+++|+.||++|++|||+++++++.+.+...+|++|.++
T Consensus 389 A~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~~~A~~~g~lvlgTgnksE~~~G 468 (634)
T 3ilv_A 389 AKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIWMLTNVKQALLITTSNRSEGDVG 468 (634)
T ss_dssp HHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHHHHHHHHTCEEBCCCCHHHHHTT
T ss_pred HHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHHHHHHhcCCEEeccCchhhHhhC
Confidence 999999999999999999999999988877777766433
Q ss_pred ----------------------------------------------------------cchhhcCCCchhhhheeeeeee
Q 014523 275 ----------------------------------------------------------LDEVDMGMTYEELSVYGRLRKI 296 (423)
Q Consensus 275 ----------------------------------------------------------tDE~dmGmtY~~ld~~~rlr~~ 296 (423)
+||++| |||++||.|++++++
T Consensus 469 y~T~ygD~~~~~~Pl~~l~KteVr~la~~l~~~~glp~l~~i~~k~pSaeL~p~~~~q~de~~l-~~Y~~lD~~l~~~~~ 547 (634)
T 3ilv_A 469 YATMDGDTAGGIAPIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAELRPSEYTQTDERDL-MPYDVLARIERKAIK 547 (634)
T ss_dssp CSCTTTTTCSSBBTTTTSCHHHHHHHHHHHHHHSCCGGGSSCC-------------------CC-CTTTHHHHHHHHHTT
T ss_pred CccccCCcccCCcccCCCcHHHHHHHHHHHHHcCCCchHHHHcCCCCCcCcCcCCCCCCCcccc-CCHHHHHHHHHHHHH
Confidence 679999 999999999999999
Q ss_pred cCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccccchhhccCCCCCcchhhH
Q 014523 297 FHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKI 376 (423)
Q Consensus 297 ~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~~~~~f~~i 376 (423)
.+++|.+|+.++.+.|+ |++++|++||++||++|++|||||+++||++|+++||+|. |.|+|- |.- +-.|+
T Consensus 548 ~~~~~~~i~~~~~~~~~--~~~~~i~~~v~~~~~~~~~~~~Kr~~~pp~~~v~~~~~~p-r~~~r~---Pi~-~~~~~-- 618 (634)
T 3ilv_A 548 ERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFHMDDFNIDP-RSWYRF---PIL-SSGFA-- 618 (634)
T ss_dssp SCCCHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHTHHHHTTCCCBCCCSSCCCCT-TTTCCC---CSS-CCTTH--
T ss_pred cCCCHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHhHhccccCCCceEEeCCCCCC-CCceeC---CcC-CccHH--
Confidence 99999999999999997 9999999999999999999999999999999999999985 555552 222 22333
Q ss_pred HHHHHhhhC
Q 014523 377 DELVKELDG 385 (423)
Q Consensus 377 d~~~~~~~~ 385 (423)
+.+++|+.
T Consensus 619 -~~~~~~~~ 626 (634)
T 3ilv_A 619 -KELNDLDQ 626 (634)
T ss_dssp -HHHHHTTC
T ss_pred -HHHHHHHh
Confidence 66666664
No 2
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=100.00 E-value=7.2e-50 Score=434.00 Aligned_cols=324 Identities=18% Similarity=0.160 Sum_probs=248.3
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCC-CceEEcCCeeeeeCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG-GRLYFDGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~-~rlvfDG~S~I~~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+||||+..||.+.|..|++.++++++++|||+|+++|++ ++++|+|+|||++||+|++++++|+.+ -++++++||+
T Consensus 199 l~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~G~~~~~l~f~G~S~I~p~G~vla~~~~f~~~-e~ll~adiDl 277 (680)
T 3sdb_A 199 ANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTTDLAWDGQTMIWENGALLAESERFPKG-VRRSVADVDT 277 (680)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTSCCSSCCCCCCEEEEETTEEEEECCSSCSS-CEEEEEEEEH
T ss_pred EEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCcccCCCCeEEeccEEEEcCCEEEEECCCCCCC-CcEEEEEEcH
Confidence 58999999999999999999999999999999999977775 799999999999999999999999653 4678999999
Q ss_pred ccccccccCCCchhhh----hhccccceeeEEeecccCcccccc-----CCCCCCcC-CCCCCHHHHHhcHHHHHHHHHH
Q 014523 80 DAVAGFRGSISSFQEQ----ASCKTKISSVAVQYSLCQPFNLKM-----SLSGPLKI-TYHSPEEEIAFGPGCWLWDYLR 149 (423)
Q Consensus 80 e~vr~~R~~~~s~~~~----a~~~~~~~~v~~~~~l~~~~~~~~-----~p~~p~~~-~~~~~~eei~~~~a~~L~Dylr 149 (423)
+.++..|.+..++... +.....|++|.+++..+..+.... .|+.|-+. .....+++++..++.|||||++
T Consensus 278 ~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (680)
T 3sdb_A 278 ELLRSERLRMGTFDDNRRHHRELTESFRRIDFALDPPAGDIGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLR 357 (680)
T ss_dssp HHHHHHHHHCHHHHHHHHHTHHHHHTCEEEEECCCCCCSCCCCCSCCCSCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchhhhhhhhccccccceeeeeeccCccccccccccccCCCCCCcchhhcchhHHHHHHHHHHHHHHHHH
Confidence 9998877655443321 111234777664443211110000 12222100 0112357899999999999999
Q ss_pred HhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhh--ccCCCCCCCchhhhcCCeEEEEEeCCCC
Q 014523 150 RSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIG--RYANGEFPTESREFAKRIFYTVFMGSEN 227 (423)
Q Consensus 150 rsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig--~~~~~~~p~~~~el~~~~v~tv~m~s~~ 227 (423)
++|.++++||||||+||+++|+++ ++|++. +| .++ +++|+||+.+
T Consensus 358 ~~g~~~vvvglSGGvDSsvaa~l~-------~~a~~~-----------lg~~~~~---------------v~~v~m~~~~ 404 (680)
T 3sdb_A 358 ALDYPKVVIGVSGGLDSTHALIVA-------THAMDR-----------EGRPRSD---------------ILAFALPGFA 404 (680)
T ss_dssp HTTSCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------TTCCGGG---------------EEEEECCC--
T ss_pred HcCCCcEEEEecCCccHHHHHHHH-------HHHHHH-----------hCCCCce---------------EEEEEECCCC
Confidence 999999999999999999887777 455432 55 233 8999999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhh-----------------------------------------
Q 014523 228 SSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL----------------------------------------- 266 (423)
Q Consensus 228 SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~~----------------------------------------- 266 (423)
++++|+++|++||+.||++|++|||+++++++...+...
T Consensus 405 ~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn~ 484 (680)
T 3sdb_A 405 TGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGDL 484 (680)
T ss_dssp ------CHHHHHHHHHTCEEEECCCHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCcH
Confidence 999999999999999999999999999998776544211
Q ss_pred ----cCCCCcc-c-----------------------------------------------------------cchhhcCC
Q 014523 267 ----TGKRPRY-K-----------------------------------------------------------LDEVDMGM 282 (423)
Q Consensus 267 ----~g~~p~f-~-----------------------------------------------------------tDE~dmGm 282 (423)
.|.-.++ . +||++||
T Consensus 485 sE~~~Gy~T~~~gD~~~~~~Pl~~l~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~eL~p~~~~~~q~de~~lg- 563 (680)
T 3sdb_A 485 SELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGEEELQSSEAKVG- 563 (680)
T ss_dssp HHHHHTCSCCSSSTTCCSEETTTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-------------CHHHHC-
T ss_pred HhHhcCeeeccCCCccccccccCCCcHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcCcCCCCCCCCCCchhhcC-
Confidence 0111112 1 5899998
Q ss_pred CchhhhheeeeeeecCCChHHHHHHHHHhhCCC----------------CCHHHHHHHHHHHHHHHhh-hccccccCCCc
Q 014523 283 TYEELSVYGRLRKIFHCGPVSMFKNLCYRWGAR----------------LTPSEVAEKVKHFFKYYSI-NRHKMTVLTPS 345 (423)
Q Consensus 283 tY~~ld~~~rlr~~~~~gp~~m~~~l~~~w~~~----------------~~~~ei~~kvk~Ff~~y~~-nqhKrt~l~Ps 345 (423)
||+.+|.|++...+.+++|.+|+.++.++|++. |++++|..|+++||++|+. |||||+++||+
T Consensus 564 ~Y~~~D~~L~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~f~~rf~~~~qfKr~~~p~g 643 (680)
T 3sdb_A 564 PFALQDFSLFQVLRYGFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNG 643 (680)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSCTTSSCCCSSCCGGGCCCCCHHHHHHHHHHHHHHHHTTSHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHhccccccccccccchhhhcCCCHHHHHHHHHHHHHHHhhhccCCcccCCCC
Confidence 999999999999999999999999999999765 9999999999999998888 99999999999
Q ss_pred ccc---CCCCCCCccccchh
Q 014523 346 YHA---ESYSPEDNRFDLRQ 362 (423)
Q Consensus 346 ~h~---e~yspDdnr~d~r~ 362 (423)
+|. .+.|| |.|+|.
T Consensus 644 pkv~~~~~lsp---r~d~r~ 660 (680)
T 3sdb_A 644 PKVSHGGALSP---RGDWRA 660 (680)
T ss_dssp CCCCTTCCCCT---TTTCCC
T ss_pred CEeCCCCCcCC---CcccCC
Confidence 999 46788 888884
No 3
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=2.1e-49 Score=422.40 Aligned_cols=263 Identities=21% Similarity=0.247 Sum_probs=219.2
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+||||++.||.+.|+.|++.++.+++++|+|+|++|++ ++++|||+|||+ .+|+|++|+++|+++ + +++++|.
T Consensus 190 ~~psAs~~~~gk~~~r~~ll~arA~e~~~~vvy~N~vG~~-~~~~f~G~S~iidp~G~vla~~~~f~e~-~--~~~d~d~ 265 (565)
T 4f4h_A 190 IVPNGSPYHMNKDAVRIDILRARIRETGLPMVYVNLVGGQ-DELVFDGGSFVLDGAGELVAKMPQFEEG-N--AIVEFDG 265 (565)
T ss_dssp EEEECCBCCTTHHHHHHHHHHHHHHHHCCCEEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBSCCE-E--EEEEEET
T ss_pred ecccccccccCcHHHHHHHHHHHHHHhCCcEEEeeeecCC-CCeEEECCcceecCCCcEEEEccccccc-e--EEEEecc
Confidence 5899999999999999999999999999999999999999 789999999999 789999999999985 3 3444442
Q ss_pred ccccccccCCCchhhhhhccccceeeEEeecccCccccccCCCCCCcCCCCCCHHHHHhcHHHHHHHHHHHhCCCceEEe
Q 014523 80 DAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLP 159 (423)
Q Consensus 80 e~vr~~R~~~~s~~~~a~~~~~~~~v~~~~~l~~~~~~~~~p~~p~~~~~~~~~eei~~~~a~~L~Dylrrsg~~g~~l~ 159 (423)
. +.. + .. .....++++||+.++++||||||+|+|++|++||
T Consensus 266 ~--~~~--------------------------~---------~~--~~~~~~~~~~~~~a~~~gl~dy~~k~g~~~~vlg 306 (565)
T 4f4h_A 266 A--RAL--------------------------P---------AA--IAPALSVEAQVYRALVLGVRDYIGKNGFPGAIIG 306 (565)
T ss_dssp T--EEC--------------------------C---------CC--BCCCCCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred c--ccc--------------------------c---------cc--cccCcchHHHHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 2 100 0 00 0012357899999999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHHHHHHHH
Q 014523 160 LSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKL 239 (423)
Q Consensus 160 LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~~~A~~L 239 (423)
||||||||+||+|+ ++| ++.++ |++++||+.+||+.|+++|+.|
T Consensus 307 lSGGiDSal~~~la-------~~a--------------lg~~~---------------v~~v~mp~~~ts~~t~~~a~~l 350 (565)
T 4f4h_A 307 LSGGVDSALVLAVA-------VDA--------------LGAER---------------VRAVMMPSRYTAGISTTDAADM 350 (565)
T ss_dssp CCSSHHHHHHHHHH-------HHH--------------HCGGG---------------EEEEECCCTTCCHHHHHHHHHH
T ss_pred cCCCccHHHHHHHH-------HHH--------------hCCcc---------------EEEEeccccccccchHHHHHHH
Confidence 99999999999999 688 67775 9999999999999999999999
Q ss_pred HHHhCCceEEEecHHHHHHHHHHhhhhcCCCC---ccc------------------------------------------
Q 014523 240 ADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRP---RYK------------------------------------------ 274 (423)
Q Consensus 240 A~~iG~~h~~i~Id~~v~a~~~~~~~~~g~~p---~f~------------------------------------------ 274 (423)
|+.||++|.+|+|+++++++...+....+..+ .++
T Consensus 351 a~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~sE~a~Gy~T~~Gd~ 430 (565)
T 4f4h_A 351 ARRVGVRYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNKSEMAVGYCTLYGDM 430 (565)
T ss_dssp HHHHTCEEEECCCHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHTCSCTTTTT
T ss_pred HHHhCCceeeeecchHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCchhhHhhccccccCCc
Confidence 99999999999999999999877765433221 111
Q ss_pred ---------------------------------------------------cchhhcCCCchhhhheeeeeeecCCChHH
Q 014523 275 ---------------------------------------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVS 303 (423)
Q Consensus 275 ---------------------------------------------------tDE~dmGmtY~~ld~~~rlr~~~~~gp~~ 303 (423)
+||++|| ||++||.|++...+.+.+|.+
T Consensus 431 ~~~~~pi~~l~Kt~v~~l~~~~~~~~~~~~~~~ip~~i~~~~psaeL~~~Q~ded~l~-~Y~~lD~~l~~~~~~~~~~~~ 509 (565)
T 4f4h_A 431 AGGFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAELRENQTDQDSLP-PYDVLDAIMRMYMEEDRPLAE 509 (565)
T ss_dssp CSSEETTTTCCHHHHHHHHHHHHHTCCTTCCCSSCHHHHHC---------------CC-CHHHHHHHHHHHTTSCCCHHH
T ss_pred ccCchhccCccHHHHHHHHHHHhhhccccCcccChHHHcCCCCCcCcCCCCCCcccCC-CHHHHHHHHHHHHHcCCCHHH
Confidence 6888897 999999999999999999998
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccC--CCCCC
Q 014523 304 MFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE--SYSPE 354 (423)
Q Consensus 304 m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e--~yspD 354 (423)
++.. .+++ +.|++|+++|.+|||||.++||++|.. +||||
T Consensus 510 i~~~-------~~~~----~~v~~~~~~~~~~~~KR~~~p~g~kv~~~af~~d 551 (565)
T 4f4h_A 510 IVAA-------GYSE----ADVKRVTRLIKINEYKRRQAPVGIRVTHRAFGRD 551 (565)
T ss_dssp HHHT-------TCCH----HHHHHHHHHHHHTHHHHTTSCCBCCCSSSCSSTT
T ss_pred HHHc-------CCCH----HHHHHHHHHHHHhhhchhcCCCceEECCCCCCCC
Confidence 8653 3674 578899999999999999999999976 57773
No 4
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=100.00 E-value=1.6e-40 Score=355.44 Aligned_cols=298 Identities=23% Similarity=0.254 Sum_probs=226.7
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+||||+..||.+.|..+++..+.+++++|+|||++|++ ++++|+|+|+|+ ++|++++++++|+++ +++++||+
T Consensus 185 ~~psa~p~~~gk~~~~~~l~~~rA~e~~~~vv~an~~G~~-~~~~f~G~S~iidp~G~vla~~~~~~e~---~~~~didl 260 (590)
T 3n05_A 185 LSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ-DELVFDGDSIVVDRDGEVVARAPQFSEG---CVVLDLDL 260 (590)
T ss_dssp EEEECCBCCCCSSCHHHHHHHHHHHHHTSEEEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBTSCE---EEEEEEEE
T ss_pred EEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEecccCC-CCeEEeCcEEEECCCCcEEEEcCCCCCc---EEEEEEcc
Confidence 5899999999999999999999999999999999999999 889999999999 999999999999874 47899999
Q ss_pred ccccccccCCCchhhhhhccccceeeEEeecccCccccccCCCCC----Cc---CCCCCCHHHHHhcHHHHHHHHHHHhC
Q 014523 80 DAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGP----LK---ITYHSPEEEIAFGPGCWLWDYLRRSG 152 (423)
Q Consensus 80 e~vr~~R~~~~s~~~~a~~~~~~~~v~~~~~l~~~~~~~~~p~~p----~~---~~~~~~~eei~~~~a~~L~Dylrrsg 152 (423)
+.++..+. +...+. ...+..+. +.. .|.+| .. ...+.++|+++..+++||+|||+++|
T Consensus 261 ~~~~~~~~---~~~~~~--~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (590)
T 3n05_A 261 PAAEAEPP---TGVVDD--GLRIDRLV----ISE------EPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNG 325 (590)
T ss_dssp CCCCSSCC---CSBCTT--SCEEEEEE----SCS------SCCCCCCCCCCCCBCCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccc---cccccc--cccccccc----cCC------CCCCcccccccccccccCCcHHHHHHHHHHHHHHHHHHhC
Confidence 87743210 100000 00011111 110 11111 11 12356789999999999999999999
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
.++++|+||||+||+++|+|+ +++ +|.++ +++++|++.++++.+
T Consensus 326 ~~~vvvglSGGvDSsv~a~la-------~~a--------------lG~~~---------------v~~v~m~~~~~~~~~ 369 (590)
T 3n05_A 326 FRSVLIGLSGGIDSALVAAIA-------CDA--------------LGAQN---------------VYGVSMPSKYSSDHS 369 (590)
T ss_dssp CCCEEEECCSSHHHHHHHHHH-------HHH--------------HCGGG---------------EEEEECCCSSCCHHH
T ss_pred CCcEEEEcCCCHHHHHHHHHH-------HHH--------------hCccc---------------EEEEEECCCCCCHHH
Confidence 999999999999999999998 577 56444 999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhh----------------------h-------hc--------CCCCcc--
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ----------------------T-------LT--------GKRPRY-- 273 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~----------------------~-------~~--------g~~p~f-- 273 (423)
.++|+++|+.||++|++|+|+++++++...+. . .| |...++
T Consensus 370 ~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TGn~se~~~Gy~t~~gd 449 (590)
T 3n05_A 370 KGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGD 449 (590)
T ss_dssp HHHHHHHHHHHTCEEEECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHHHTCCCSSCT
T ss_pred HHHHHHHHHHcCCcEEEEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCCCHHHHhcCchhhcCC
Confidence 99999999999999999999998877642210 0 01 110000
Q ss_pred -------------------------------------c---------------cchhhcCCCchhhhheeeeeeecCCCh
Q 014523 274 -------------------------------------K---------------LDEVDMGMTYEELSVYGRLRKIFHCGP 301 (423)
Q Consensus 274 -------------------------------------~---------------tDE~dmGmtY~~ld~~~rlr~~~~~gp 301 (423)
+ +||++|| ||+++|.|++...+.+.+|
T Consensus 450 ~~~~~~Pl~~l~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~L~p~q~de~~l~-~Y~~~D~~l~~~~~~~~~~ 528 (590)
T 3n05_A 450 SVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRPGQVDTDSLP-DYPVLDAILELYVDRDTGA 528 (590)
T ss_dssp TSCSBCTTTTSCHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC-----------------CHHHHHHHHHHHHTSCCCH
T ss_pred CccceeecCCCcHHHHHHHHHHhCcccccccccccChHHHhCCCCCCCCCCCCcCccccC-CHHHHHHHHHHHHHcCCCH
Confidence 0 6888997 9999999999888889999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCccccchhhccCCCCCc
Q 014523 302 VSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPY 371 (423)
Q Consensus 302 ~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdnr~d~r~fly~~~~~~ 371 (423)
.+|... .++++ .|++++++|.+|||||.++||.+++.+.|++ .|+| ||..+.|
T Consensus 529 ~~i~~~-------~~~~~----~v~~~~~~~~~~~~KR~~~p~~~~v~~~~~~---~~~r---~p~~~~~ 581 (590)
T 3n05_A 529 DAIVAA-------GYDRE----LVVKTLRMVDTAEYKRRQYPPGTKISAKGFG---KDRR---LPITNRW 581 (590)
T ss_dssp HHHHHT-------TCCHH----HHHHHHHHHHHTHHHHHSSCCCCCCSSSSSC---TTSC---CCSSCCC
T ss_pred HHHHHc-------CCCHH----HHHHHHHHHHhchhhhccCCCCceecCCCCC---CCcc---CcccCCC
Confidence 999873 37753 5667778899999999999999999998886 5655 5665544
No 5
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.92 E-value=1.8e-25 Score=218.68 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=80.5
Q ss_pred CCHHHHHhcHHHHHHHHHHHhC-CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCc
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 209 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg-~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~ 209 (423)
.++++|.. +++||||||+++| .++++||||||+|||++|+|+ +++++. +|.+...
T Consensus 18 ~~~~~i~~-~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~-------~~a~~~-----------lg~~~~~----- 73 (275)
T 1wxi_A 18 NAEEEIRR-SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLC-------QMAINE-----------LRLETGN----- 73 (275)
T ss_dssp CHHHHHHH-HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------HHHHHCC-----
T ss_pred CHHHHHHH-HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHH-------HHHHHH-----------hcccccc-----
Confidence 45666666 7999999999999 999999999999999999887 355321 3321000
Q ss_pred hhhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhh
Q 014523 210 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQ 264 (423)
Q Consensus 210 ~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~-~h~~i~Id~~v~a~~~~~~ 264 (423)
-+-.+++++||. .++.+.++|+++|+.||+ +|++|||+++++++.+.+.
T Consensus 74 ----~~~~v~av~~~~--~~~~~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~ 123 (275)
T 1wxi_A 74 ----ESLQFIAVRLPY--GVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALR 123 (275)
T ss_dssp ----TTCEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHH
T ss_pred ----ccceEEEEEeCC--CCccCHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHH
Confidence 000389999994 345689999999999999 9999999999988875554
No 6
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.92 E-value=9.3e-25 Score=212.91 Aligned_cols=103 Identities=26% Similarity=0.378 Sum_probs=79.8
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCch
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 210 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~ 210 (423)
++++++.. +++|||||++++|.++++||||||+|||++|+|+ .++++. +|.++..
T Consensus 17 ~~~~~i~~-~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La-------~~a~~~-----------lg~~~~~------ 71 (271)
T 1kqp_A 17 DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLA-------QLAVES-----------IREEGGD------ 71 (271)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------HHHTTCC------
T ss_pred CHHHHHHH-HHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHH-------HHHHHH-----------hcccCCC------
Confidence 45556655 7999999999999999999999999999999887 344321 4432100
Q ss_pred hhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhhh
Q 014523 211 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT 265 (423)
Q Consensus 211 ~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~-~h~~i~Id~~v~a~~~~~~~ 265 (423)
..+++++||. .++.+.++|+++|+.||+ +|++++|+++++++.+.+..
T Consensus 72 -----~~v~av~~~~--~~~~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~ 120 (271)
T 1kqp_A 72 -----AQFIAVRLPH--GTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQ 120 (271)
T ss_dssp -----CEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH
T ss_pred -----ceEEEEEeCC--CCCCCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhh
Confidence 1389999994 344579999999999999 99999999998887655543
No 7
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.92 E-value=1e-24 Score=211.59 Aligned_cols=176 Identities=19% Similarity=0.142 Sum_probs=137.2
Q ss_pred CHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 132 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
+.++++..+.+||+||++++|.++++|+||||+||+++|+++ +++ . ..+
T Consensus 4 ~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~-------~~~--------------~-~~~--------- 52 (268)
T 1xng_A 4 DYQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKV--------------F-KEN--------- 52 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHH--------------H-GGG---------
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHH-------HHh--------------C-CCC---------
Confidence 468899999999999999999999999999999999999998 455 2 233
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhh--------------------------
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT-------------------------- 265 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~-------------------------- 265 (423)
+++++|++..++.++.++|+++|+.||++|++++|+++++++...+..
T Consensus 53 ------v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g 126 (268)
T 1xng_A 53 ------AHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSD 126 (268)
T ss_dssp ------EEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------EEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCC
Confidence 899999998888999999999999999999999999876655432210
Q ss_pred ----hc--------CCCCccc-------------------------------------------cchhhcCCCchhhhhe
Q 014523 266 ----LT--------GKRPRYK-------------------------------------------LDEVDMGMTYEELSVY 290 (423)
Q Consensus 266 ----~~--------g~~p~f~-------------------------------------------tDE~dmGmtY~~ld~~ 290 (423)
.+ |...++. +||++||++|+++|.|
T Consensus 127 ~~vl~tg~~~E~~~Gy~t~~gd~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa~l~~~q~de~~lg~~y~~ld~~ 206 (268)
T 1xng_A 127 SLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPL 206 (268)
T ss_dssp CEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCCSSTTCCHHHHHSSCHHHHHHH
T ss_pred CEEEECCcHHHHhcCcccccCCCCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCcCcCCCCcchhhcCCCHHHHHHH
Confidence 01 1111111 7899999999999999
Q ss_pred eeee---eec-CCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCCCCCc
Q 014523 291 GRLR---KIF-HCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDN 356 (423)
Q Consensus 291 ~rlr---~~~-~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~yspDdn 356 (423)
++.+ .+. +++|.++..+ .+++ +.|++|+++|.+|||||+ +||++++.+.....+
T Consensus 207 l~~~~~~~~~~~~~~~~i~~~-------~~~~----~~~~~~~~~~~~~~~kr~-~~~~~~~~~~~~~~~ 264 (268)
T 1xng_A 207 LKDIEALFQTKPIDTETLAQL-------GYDE----ILVKNITSRIQKNAFKLE-LPAIAKRFNPELEHH 264 (268)
T ss_dssp HHHHHHHSSSSCCCHHHHHHT-------TCCH----HHHHHHHHHHHHTGGGGS-CCEECCCC-------
T ss_pred HHHHHHHhhccCCCHHHHHHc-------CCCH----HHHHHHHHHHHHhHhccc-CCCCccccchhhccc
Confidence 9987 455 3788888762 3664 358999999999999998 899999887766543
No 8
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.91 E-value=3.4e-24 Score=210.18 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=78.9
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCch
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 210 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~ 210 (423)
.++++|.. +++||+|||+++|+++++||||||+||+++|+|+ .+|++. +|.+.. |.
T Consensus 19 ~~~~~i~~-~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~-------~~A~~~-----------Lg~~~~---~~-- 74 (279)
T 3q4g_A 19 DPQFEIER-RVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLA-------QLAVEE-----------LNQQHN---TT-- 74 (279)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------HHHHTT---CS--
T ss_pred CHHHHHHH-HHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHHHHH-----------hCcccc---cC--
Confidence 44555554 6799999999999999999999999999999887 344322 553300 00
Q ss_pred hhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCC-ceEEEecHHHHHHHHH
Q 014523 211 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLS 261 (423)
Q Consensus 211 ~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~-~h~~i~Id~~v~a~~~ 261 (423)
+..++++.|| ++++.+.++|+.+|+.||+ +|++|||+++++++..
T Consensus 75 ----~~~v~av~~p--~~~~~~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~ 120 (279)
T 3q4g_A 75 ----EYQFIAVRLP--YGEQKDEDEAQLALSFIRPTHSVSVNIKAGVDGLHA 120 (279)
T ss_dssp ----CCEEEEEECC--SSSCSCHHHHHHHHHHHCCSEEEECCCHHHHHHHHH
T ss_pred ----CceEEEEEec--CCChHHHHHHHHHHHHhCCCeEEEEECHHHHHHHHH
Confidence 0138999999 3456678999999999999 9999999999998766
No 9
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.89 E-value=1.1e-23 Score=203.18 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=120.8
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCch
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 210 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~ 210 (423)
.+.++++..+++||+||++++|.++++|+||||+||+++|+++ +++ +| .+
T Consensus 4 ~~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~g-~~-------- 53 (249)
T 3p52_A 4 MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------KRA--------------LK-EN-------- 53 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHH-------HHH--------------HT-TS--------
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-------HHH--------------cC-Cc--------
Confidence 3678999999999999999999999999999999999999998 466 45 33
Q ss_pred hhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhh-----------------------h-
Q 014523 211 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT-----------------------L- 266 (423)
Q Consensus 211 ~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~-----------------------~- 266 (423)
+++++|++..+++++.++|+.+|+.+|++|++++|+++++++...+.. .
T Consensus 54 -------v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~ 126 (249)
T 3p52_A 54 -------VFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALK 126 (249)
T ss_dssp -------EEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------EEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHC
Confidence 899999998888899999999999999999999999988776542210 0
Q ss_pred ------c--------CCCCccc-------------------------------------------cchhhcCCCchhhhh
Q 014523 267 ------T--------GKRPRYK-------------------------------------------LDEVDMGMTYEELSV 289 (423)
Q Consensus 267 ------~--------g~~p~f~-------------------------------------------tDE~dmGmtY~~ld~ 289 (423)
+ |..-++. +||++|||||++||.
T Consensus 127 g~~vl~tgn~se~~~g~~t~~gd~~~~i~PL~~l~K~eV~~la~~~gip~~i~~k~psa~L~~~q~de~~lg~~y~~ld~ 206 (249)
T 3p52_A 127 NSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYTKIDE 206 (249)
T ss_dssp TEEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC-----------------CCCCHHHH
T ss_pred CCeEEeCCCHHHHHccchhhhccccCccccccCCcHHHHHHHHHHcCCcHHhcCCCCCcccCCCCCCHHHcCCCHHHHHH
Confidence 0 0000000 799999999999999
Q ss_pred eeeeeeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCcc
Q 014523 290 YGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY 346 (423)
Q Consensus 290 ~~rlr~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~ 346 (423)
|++.. .++.++- .. .+++ +.|+++.+++.+|+|||. +||..
T Consensus 207 ~l~~~----~~~~~~~-~~------~~~~----~~~~~i~~~~~~~~~kr~-~p~~~ 247 (249)
T 3p52_A 207 GLKAL----ETNDEKL-LR------TLDP----SLIAMLKNRMQKNAFKGK-MPEIL 247 (249)
T ss_dssp HHHHH----HTTCHHH-HH------HSCH----HHHHHHHHHHHHTGGGGS-CCEEC
T ss_pred HHHHc----cChHHHH-Hc------CCCH----HHHHHHHHHHHhhhhccC-CCCCC
Confidence 99764 2333332 11 2454 356667799999999997 88764
No 10
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.89 E-value=2.8e-23 Score=199.97 Aligned_cols=168 Identities=20% Similarity=0.237 Sum_probs=132.1
Q ss_pred CHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 132 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
+.+++...+..||++| |.++++|+||||+||+++|+++ .++ .+..+
T Consensus 5 ~~~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~-------~~~--------------~g~~~--------- 50 (257)
T 2e18_A 5 DYDKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLA-------TKA--------------LGKEK--------- 50 (257)
T ss_dssp CHHHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHH-------HHH--------------HCGGG---------
T ss_pred CHHHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHH-------HHh--------------cCCCc---------
Confidence 3578899999999999 7899999999999999999998 466 33233
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhh--------------------------
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT-------------------------- 265 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~~~-------------------------- 265 (423)
+++++|+... + ++.++|+++|+.||++|++++|+++++.+...+..
T Consensus 51 ------v~av~~~~~~-~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~ 122 (257)
T 2e18_A 51 ------VLGLIMPYFE-N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSL 122 (257)
T ss_dssp ------EEEEECCSSC-S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------EEEEEeCCCC-c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHc
Confidence 8999999874 4 88999999999999999999999876654332210
Q ss_pred -----hcC--------CCCccc-------------------------------------------cchhhcCCCchhhhh
Q 014523 266 -----LTG--------KRPRYK-------------------------------------------LDEVDMGMTYEELSV 289 (423)
Q Consensus 266 -----~~g--------~~p~f~-------------------------------------------tDE~dmGmtY~~ld~ 289 (423)
.+| .-.++. +||++||++|+++|.
T Consensus 123 g~~vl~tg~~~e~~~Gy~t~~g~~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~l~~~q~de~~lg~~y~~ld~ 202 (257)
T 2e18_A 123 GRIVLGTSNRSEFLTGYFTKWGDGASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAGLWEGQTDEDELGISYNLLDE 202 (257)
T ss_dssp TCEEECCCCHHHHHHTCSCTTSTTCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCCSSTTCCHHHHHTSCHHHHHH
T ss_pred CCEEEEcCchhHHhcCCeeccCCCccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCCcCCCCcCHhhcCCCHHHHHH
Confidence 011 100110 788999999999999
Q ss_pred eeeeeeecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCC
Q 014523 290 YGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 352 (423)
Q Consensus 290 ~~rlr~~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~ys 352 (423)
|++...+.+++|.++.... .+++ +.|++|+++|.+|||||+ +||+++..+.|
T Consensus 203 ~l~~~~~~~~~~~~i~~~~------~~~~----~~~~~~~~~~~~~~~kr~-~~~~~~~~~~~ 254 (257)
T 2e18_A 203 ILWRMIDLKIGKEEIAKDL------GIPL----SLVERVEELIKKSEHKRR-LPIGPSFEDLI 254 (257)
T ss_dssp HHHHHHTSCCCHHHHHHTT------TCCH----HHHHHHHHHHHTTGGGSS-CCCCCCCGGGE
T ss_pred HHHHHHhcCCCHHHHHHHh------CCCH----HHHHHHHHHHHHhHhhcc-CCCCCCCCCCC
Confidence 9998777788888887642 2564 468999999999999998 88998876543
No 11
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.88 E-value=1.2e-22 Score=199.57 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=78.3
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhh
Q 014523 133 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 212 (423)
Q Consensus 133 ~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~e 212 (423)
.++....++.||+|||+++|+++++||||||+||+++|+|+ ++|++. +|.+..
T Consensus 26 ~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La-------~~A~da-----------LG~~~~--------- 78 (285)
T 3dpi_A 26 ARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLA-------QLAVER-----------LRASGY--------- 78 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH-------HHHHHH-----------HHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHH-------HHHHHH-----------hcccCc---------
Confidence 34555666899999999999999999999999999999887 344322 554320
Q ss_pred hcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhC-CceEEEecHHHHHHHHHHhh
Q 014523 213 FAKRIFYTVFMGSENSSQETRMRAKKLADEIG-SWHLDVSIDTVVSAFLSLFQ 264 (423)
Q Consensus 213 l~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG-~~h~~i~Id~~v~a~~~~~~ 264 (423)
...++++.||. +++.+.++|+.+|+.|| +.|++|||+++++++.+.+.
T Consensus 79 --~~~viav~~p~--~~~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~ 127 (285)
T 3dpi_A 79 --DARFVAMRLPY--GAQHDEADARRALAFVRADETLTVDVKPAADAMLAALA 127 (285)
T ss_dssp --CCEEEEEECCS--CC---CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHH
T ss_pred --ccEEEEEEcCC--CCHHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHH
Confidence 00378999984 56678899999999999 69999999999999876664
No 12
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.87 E-value=3.5e-22 Score=192.62 Aligned_cols=94 Identities=29% Similarity=0.370 Sum_probs=83.4
Q ss_pred CHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 132 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
..++++..+..||+||++++|.++++|+||||+||+++|+|+ .++ +.+
T Consensus 8 ~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~-------~~~---------------~~~---------- 55 (249)
T 3fiu_A 8 SPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLA-------VKT---------------GLP---------- 55 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHH-------HHT---------------TSC----------
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH-------HHh---------------CCC----------
Confidence 567889999999999999999999999999999999999998 454 233
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHHHHHHh
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLF 263 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~~ 263 (423)
.+ +++|++..++.++.++|+.+|+.||++|++++|++.++++...+
T Consensus 56 -----~~-av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~ 101 (249)
T 3fiu_A 56 -----TT-ALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLAST 101 (249)
T ss_dssp -----EE-EEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHT
T ss_pred -----CE-EEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHH
Confidence 25 99999887889999999999999999999999999998877655
No 13
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.89 E-value=3.1e-09 Score=107.90 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=79.5
Q ss_pred HHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCC
Q 014523 147 YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE 226 (423)
Q Consensus 147 ylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~ 226 (423)
+|++.+..+++|+||||+||+++|.++ .+ .+.+ +++++|...
T Consensus 3 ~~~~~~~~kVlVa~SGGvDSsv~a~lL-------~~---------------~G~~----------------V~~v~~~~~ 44 (376)
T 2hma_A 3 AMSDNSKTRVVVGMSGGVDSSVTALLL-------KE---------------QGYD----------------VIGIFMKNW 44 (376)
T ss_dssp --CCGGGSEEEEECCSSHHHHHHHHHH-------HH---------------TTCE----------------EEEEEEECC
T ss_pred hhhhCCCCeEEEEEeCHHHHHHHHHHH-------HH---------------cCCc----------------EEEEEEECC
Confidence 455566678999999999999999988 23 2433 889999754
Q ss_pred C--------CCHHHHHHHHHHHHHhCCceEEEecHHHHHHH-HHHh-hh-hcCCCC----------ccc---cchhhcCC
Q 014523 227 N--------SSQETRMRAKKLADEIGSWHLDVSIDTVVSAF-LSLF-QT-LTGKRP----------RYK---LDEVDMGM 282 (423)
Q Consensus 227 ~--------SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~-~~~~-~~-~~g~~p----------~f~---tDE~dmGm 282 (423)
. ++.++.++|+++|+.||++|+++++++.+... .+.| .. ..|.+| ||+ .-..++|.
T Consensus 45 ~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~ 124 (376)
T 2hma_A 45 DDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGA 124 (376)
T ss_dssp CCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTC
T ss_pred CcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 25678999999999999999999998766332 2222 11 235555 354 22345899
Q ss_pred Cchhhhheeeeee
Q 014523 283 TYEELSVYGRLRK 295 (423)
Q Consensus 283 tY~~ld~~~rlr~ 295 (423)
+|..++|+++...
T Consensus 125 d~IatGH~a~d~~ 137 (376)
T 2hma_A 125 DYVATGHYARVAR 137 (376)
T ss_dssp SEEECCCSEEEEE
T ss_pred CEEEECcchhhhh
Confidence 9999999987654
No 14
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.87 E-value=4.8e-09 Score=114.29 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=75.3
Q ss_pred CHHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchh
Q 014523 132 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 211 (423)
Q Consensus 132 ~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~ 211 (423)
..+++...+..+|++|+. .++++|+||||+||+++|+|+ .++ +|.++
T Consensus 222 ~~~~~~~~~i~~Ir~~v~---~~~vvv~lSGGvDSsVla~Ll-------~~a--------------lG~~~--------- 268 (697)
T 2vxo_A 222 TVQNRELECIREIKERVG---TSKVLVLLSGGVDSTVCTALL-------NRA--------------LNQEQ--------- 268 (697)
T ss_dssp CHHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHH--------------SCGGG---------
T ss_pred hhhHHHHHHHHHHHHHhc---ccceEEEccCchHHHHHHHHH-------HHh--------------cCCce---------
Confidence 346777888999999984 479999999999999999999 566 56344
Q ss_pred hhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHHHH
Q 014523 212 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA 258 (423)
Q Consensus 212 el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a 258 (423)
+++++|+...++..+.++|+++|+.+|++|+.+++++.+..
T Consensus 269 ------V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~f~~ 309 (697)
T 2vxo_A 269 ------VIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYN 309 (697)
T ss_dssp ------EEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHHHHT
T ss_pred ------EEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHHHHh
Confidence 99999998877777889999999999999999999987755
No 15
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.74 E-value=3e-08 Score=100.90 Aligned_cols=104 Identities=23% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCC-----
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 227 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~----- 227 (423)
..+++|++|||+||+++|+++ .+ .+.+ +++++|....
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL-------~~---------------~G~~----------------V~~v~~~~~~~~~~~ 58 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLL-------QQ---------------QGYQ----------------VEGLFMKNWEEDDGE 58 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHH-------HT---------------TCCE----------------EEEEEEECCCCCSHH
T ss_pred CCEEEEEEEChHHHHHHHHHH-------HH---------------cCCe----------------EEEEEEEcCcccccc
Confidence 357999999999999999988 23 2433 8899996432
Q ss_pred ---CCHHHHHHHHHHHHHhCCceEEEecHHHHHHH-HHHh-hh-hcCCCC----------ccc---cchhh-cCCCchhh
Q 014523 228 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVSAF-LSLF-QT-LTGKRP----------RYK---LDEVD-MGMTYEEL 287 (423)
Q Consensus 228 ---SS~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~-~~~~-~~-~~g~~p----------~f~---tDE~d-mGmtY~~l 287 (423)
++.++.++|+++|+.||++|+++++++.+... .+.+ .. ..|.+| +|+ .-..+ +|.+|..+
T Consensus 59 ~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~Iat 138 (380)
T 2der_A 59 EYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 138 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEEC
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 24678899999999999999999999766322 2222 11 235555 344 11234 89999999
Q ss_pred hheeeee
Q 014523 288 SVYGRLR 294 (423)
Q Consensus 288 d~~~rlr 294 (423)
+||++.+
T Consensus 139 GH~a~d~ 145 (380)
T 2der_A 139 GHYVRRA 145 (380)
T ss_dssp CCSCEEE
T ss_pred ccccccc
Confidence 9998753
No 16
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.67 E-value=4.2e-08 Score=103.56 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=68.9
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhh
Q 014523 133 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 212 (423)
Q Consensus 133 ~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~e 212 (423)
.+++......+|++++.. ++++|+||||+||+++|+++ .++ +| .+
T Consensus 210 ~~~~~~~~~~~ir~~v~~---~~vvvalSGGvDSsv~a~ll-------~~a--------------~G-~~---------- 254 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD---DKVILGLSGGVDSSVTAMLL-------HRA--------------IG-KN---------- 254 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT---CEEEEECCSSHHHHHHHHHH-------HHH--------------HG-GG----------
T ss_pred HHHHHHhhhhhhhhhhcc---cceEEEecCCCCHHHHHHHH-------HHH--------------hC-CC----------
Confidence 456777788888888743 78999999999999999998 466 55 33
Q ss_pred hcCCeEEEEEeCCCCCCHHHHHHHHH-HHHHhCCceEEEecHHHH
Q 014523 213 FAKRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 213 l~~~~v~tv~m~s~~SS~~t~~~A~~-LA~~iG~~h~~i~Id~~v 256 (423)
+++++|+....+..+.+.|++ +|+.+|++|+.+++++.+
T Consensus 255 -----v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f 294 (525)
T 1gpm_A 255 -----LTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRF 294 (525)
T ss_dssp -----EEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHH
T ss_pred -----EEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHH
Confidence 899999987666667778865 899999999999999865
No 17
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=98.67 E-value=2.3e-08 Score=96.93 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=63.2
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...+ ..+..+++..+.++++++++||++|.+ +.+.|+|+|+|+ ++|+++++++ |.+ .+++++||+
T Consensus 186 ~~ps~~~~~~~--~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~~~-~~e---~~l~a~id~ 258 (283)
T 3hkx_A 186 LVPTALAGDET--SVPGILLPARAVENGITLAYANHCGPE-GGLVFDGGSVVVGPAGQPLGELG-VEP---GLLVVDLPD 258 (283)
T ss_dssp EEECCCBSCCT--HHHHTHHHHHHHHHTCEEEEECBEEEE-TTEEEECCCEEECTTSCEEEECC-SSC---EEEEEEEEC
T ss_pred EECCCCCCccc--HHHHHHHHHHHHHhCCEEEEEccccCC-CCeEEeeEEEEECCCCCEEEecC-CCC---eEEEEEECH
Confidence 47888887765 567789999999999999999999999 678999999999 9999999998 655 367999999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 259 ~~~~~~R~~ 267 (283)
T 3hkx_A 259 QSQDAGSDS 267 (283)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999877754
No 18
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.66 E-value=7.4e-08 Score=95.15 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=65.8
Q ss_pred HHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhh
Q 014523 134 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 213 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el 213 (423)
+.+......+|++++. .++++|+||||+||+++|+++ .++ +|.+
T Consensus 4 ~~~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll-------~~~--------------~g~~------------ 47 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLA-------HKA--------------IGDR------------ 47 (308)
T ss_dssp HHHHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHH-------HHH--------------HGGG------------
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHH-------HHh--------------hCCC------------
Confidence 4567778899999985 478999999999999999998 455 4533
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHH-HHHHhCCceEEEecHHHH
Q 014523 214 AKRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 214 ~~~~v~tv~m~s~~SS~~t~~~A~~-LA~~iG~~h~~i~Id~~v 256 (423)
++++++.+......+.+.+++ +|+.+|++|+.+++++.+
T Consensus 48 ----v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~f 87 (308)
T 2dpl_A 48 ----LHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDRF 87 (308)
T ss_dssp ----EEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHHH
T ss_pred ----EEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHHH
Confidence 888998766544456667777 667999999999998753
No 19
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=98.60 E-value=3.8e-08 Score=95.32 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=68.3
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++... ...+..+++..+.++++++++||+.|.+ +.+.|+|+|+|+ ++|+++++ +.|+++ +++++||+
T Consensus 187 ~~psa~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~-~~~~e~---~l~~~id~ 259 (281)
T 3p8k_A 187 FYVAQWPMSR--LQHWHSLLKARAIENNMFVIGTNSTGFD-GNTEYAGHSIVINPNGDLVGE-LNESAD---ILTVDLNL 259 (281)
T ss_dssp EEEECCBGGG--HHHHHHHHHHHHHHHTSEEEEEECEEEC-SSCEEECCCEEECTTSCEEEE-CCSSCE---EEEEEEET
T ss_pred EECCCCCCcc--HHHHHHHHHHHHHHcCCEEEEEccCcCC-CCcEEeeeEEEECCCCCEEEe-cCCCCe---EEEEEEcH
Confidence 4788887754 5667789999999999999999999999 678899999999 89999999 777663 57999999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 260 ~~~~~~R~ 267 (281)
T 3p8k_A 260 NEVEQQRE 267 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876664
No 20
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=98.60 E-value=2.5e-08 Score=95.27 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=67.2
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|++++. .+..+++..+.+++++++++|++|.+ +.+.|+|+|+|+ ++|+++++++.|+++ +++++||+
T Consensus 167 ~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~il~~~~~~~~~---~~~~~id~ 237 (262)
T 3ivz_A 167 AHPANLVMP-----YAPRAMPIRALENKVYTVTADRVGEE-RGLKFIGKSLIASPKAEVLSMASETEEE---VGVAEIDL 237 (262)
T ss_dssp EEEECCCSS-----CHHHHHHHHHHHHTCEEEEEECCSEE-TTEECCCCCEEECTTSCEEEECCSSCCE---EEEEECCH
T ss_pred EEcCCCCch-----HHHHHHHHHHHhcCcEEEEECCCCcC-CCceEeeeEEEECCCCCEeecCCCCCce---EEEEEEcH
Confidence 367887764 45678899999999999999999999 678999999999 899999999988663 57899999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 238 ~~~~~~R~ 245 (262)
T 3ivz_A 238 SLVRNKRI 245 (262)
T ss_dssp HHHHCCEE
T ss_pred HHHHHHhh
Confidence 99887664
No 21
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=98.56 E-value=5.5e-08 Score=97.04 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=68.9
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|++++ .+.+.+..+++..+.+++++++++|+.|.+ +.++|+|+|+|+ .+|+++++++.|.++ +++++||+
T Consensus 187 l~psa~~~--~~~~~~~~l~~arA~En~~~vv~an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~e~---il~a~id~ 260 (341)
T 2uxy_A 187 VRCQGYMY--PAKDQQVMMAKAMAWANNCYVAVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEEMG---IQYAQLSL 260 (341)
T ss_dssp EEEECCBT--TCHHHHHHHHHHHHHHHTCEEEEEECEEEC-SSCEEECCCEEECTTSCEEEECCSCTTC---EEEEEEEH
T ss_pred EEcCCCCC--CcHHHHHHHHHHHHHhCCcEEEEECCCCCC-CCceeeeEEEEECCCCCEEEECCCCCCE---EEEEEEcH
Confidence 46788765 566889999999999999999999999999 678899999999 899999999988664 57899999
Q ss_pred ccccccc
Q 014523 80 DAVAGFR 86 (423)
Q Consensus 80 e~vr~~R 86 (423)
+.++..|
T Consensus 261 ~~~~~~R 267 (341)
T 2uxy_A 261 SQIRDAR 267 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776444
No 22
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.52 E-value=3.5e-07 Score=96.03 Aligned_cols=83 Identities=22% Similarity=0.194 Sum_probs=68.0
Q ss_pred HHHHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhh
Q 014523 133 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 212 (423)
Q Consensus 133 ~eei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~e 212 (423)
.+.+......+|++++. .++++|+||||+||+++|.++ .++ + .+
T Consensus 192 ~~~~~~~~i~~ir~~~~---~~kvvvalSGGvDSsvla~ll-------~~~---------------g-~~---------- 235 (503)
T 2ywb_A 192 PEHVLEELLREVRERAG---KDRVLLAVSGGVDSSTLALLL-------AKA---------------G-VD---------- 235 (503)
T ss_dssp HHHHHHHHHHHHHHHHT---TSEEEEEECSSHHHHHHHHHH-------HHH---------------T-CE----------
T ss_pred chhhhHHHHHhhhhhcc---CccEEEEecCCcchHHHHHHH-------HHc---------------C-Ce----------
Confidence 45566667788888873 378999999999999999998 343 3 32
Q ss_pred hcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHHH
Q 014523 213 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 213 l~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~v 256 (423)
++++++.+.....++.+.++++|+++|++|+.+++++.+
T Consensus 236 -----v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f 274 (503)
T 2ywb_A 236 -----HLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERF 274 (503)
T ss_dssp -----EEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHH
T ss_pred -----EEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHH
Confidence 899999876656678999999999999999999999754
No 23
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.51 E-value=2.2e-07 Score=87.13 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=53.0
Q ss_pred CCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHH
Q 014523 152 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 231 (423)
Q Consensus 152 g~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~ 231 (423)
|+++++|++|||+||++++.++ .++ + .+ ++++++........
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll-------~~~---------------~-~~---------------v~av~~~~g~~~~~ 42 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQA-------LQD---------------Y-DD---------------VHCITFDYGQRHRA 42 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHH-------HHH---------------C-SE---------------EEEEEEESSSSCHH
T ss_pred CCCCEEEEecCcHHHHHHHHHH-------HHc---------------C-CC---------------EEEEEEECCCCCHH
Confidence 4678999999999999999988 343 3 22 77888776555567
Q ss_pred HHHHHHHHHHHhCCc-eEEEecHHH
Q 014523 232 TRMRAKKLADEIGSW-HLDVSIDTV 255 (423)
Q Consensus 232 t~~~A~~LA~~iG~~-h~~i~Id~~ 255 (423)
+.+.|+++|+.+|++ |++++++.+
T Consensus 43 e~~~a~~~a~~lgi~~~~vi~~~~l 67 (232)
T 2pg3_A 43 EIEVAQELSQKLGAAAHKVLDVGLL 67 (232)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred HHHHHHHHHHHhCCCceEEEeChhH
Confidence 789999999999999 999999843
No 24
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.48 E-value=3.2e-07 Score=97.57 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHHHHhC-CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeC
Q 014523 146 DYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG 224 (423)
Q Consensus 146 Dylrrsg-~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~ 224 (423)
+++|+.| .++++|+||||+||+++|+|+ .++ +| ++ +++++|.
T Consensus 247 ~~ir~~g~~~~vvvalSGGvDSsv~a~ll-------~~~--------------~G-~~---------------v~~v~vd 289 (556)
T 3uow_A 247 KNIEKYKHDHYVIAAMSGGIDSTVAAAYT-------HKI--------------FK-ER---------------FFGIFID 289 (556)
T ss_dssp HHHGGGTTTCEEEEECCSSHHHHHHHHHH-------HHH--------------HG-GG---------------EEEEEEE
T ss_pred eeeeecCCCceEEEEcccCCCHHHHHHHH-------HHH--------------hC-Ce---------------EEEEEEe
Confidence 3444446 678999999999999999999 577 56 33 8999998
Q ss_pred CCCCCHHHHHHH-HHHHHHh-CCceEEEecHHHHH
Q 014523 225 SENSSQETRMRA-KKLADEI-GSWHLDVSIDTVVS 257 (423)
Q Consensus 225 s~~SS~~t~~~A-~~LA~~i-G~~h~~i~Id~~v~ 257 (423)
+......+.+.| +.+|+.+ |++|+.+|+++.+.
T Consensus 290 ~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f~ 324 (556)
T 3uow_A 290 NGLLRKNEAENVYTFLKSTFPDMNITKIDASENFL 324 (556)
T ss_dssp CSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHHH
Confidence 765554555566 6799999 99999999998653
No 25
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=98.47 E-value=7.4e-08 Score=91.91 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=68.1
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...+ ..+..+++..+.++++++++||+.|.+++++.|.|+|+|+ ++|+++++.+ +.+ .+++++||+
T Consensus 170 ~~~s~w~~~~~--~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~v~~~~~-~~e---~~l~~~id~ 243 (266)
T 2e11_A 170 LFVANWPSARA--YAWKTLLRARAIENLCFVAAVNRVGVDGNQLHYAGDSAVIDFLGQPQVEIR-EQE---QVVTTTISA 243 (266)
T ss_dssp EEEECCCGGGH--HHHHHHHHHHHHHTTSEEEEEECEEECTTSCEEEEEEEEECTTSCEEEEEE-SSC---EEEEEEECH
T ss_pred EEeCCCCCCch--HHHHHHHHHHHHhcCcEEEEEcCCcCCCCCceEeeeEEEECCCCceeeecC-CCC---eEEEEEEcH
Confidence 46788776544 3577899999999999999999999997778999999999 8999999998 655 357899999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 244 ~~~~~~R~ 251 (266)
T 2e11_A 244 AALAEHRA 251 (266)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876664
No 26
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.41 E-value=3.7e-07 Score=84.08 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=52.0
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
++++|+||||+||++++.++ .+. + .+ ++++++.......++.
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll-------~~~---------------~-~~---------------v~~~~~~~~~~~~~e~ 45 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWA-------LKE---------------F-EE---------------VETVTFHYNQRHSQEV 45 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH---------------C-SE---------------EEEEEEESSCTTCHHH
T ss_pred CCEEEEccCcHHHHHHHHHH-------HHc---------------C-Cc---------------eEEEEEeCCCCCHHHH
Confidence 57999999999999999988 333 3 22 7788887655445778
Q ss_pred HHHHHHHHHhCCceEEEecHHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
+.|+++|+.+|++|+.++++..
T Consensus 46 ~~a~~~a~~lgi~~~~~~~~~~ 67 (219)
T 3bl5_A 46 EVAKSIAEKLGVKNHLLDMSLL 67 (219)
T ss_dssp HHHHHHHHTTCCCEEEEECGGG
T ss_pred HHHHHHHHHhCCCeEEEeChHH
Confidence 9999999999999999999863
No 27
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=98.35 E-value=6.9e-07 Score=86.51 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=67.9
Q ss_pred cccCCccccc-----cHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEE
Q 014523 2 NASGSHHQLR-----KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVA 75 (423)
Q Consensus 2 N~SaSh~~lg-----K~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a 75 (423)
|+++++...+ +...+..+.+..+.+++++.+++|+.|.+ +...|.|+|+|+ ++|+++++.+.|.++ ++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~~~~~~~~---~l~~ 271 (303)
T 1uf5_A 196 NTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGME-ENCMLLGHSCIVAPTGEIVALTTTLEDE---VITA 271 (303)
T ss_dssp CCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEEBCEEE-TTEEECCCCEEECTTSCEEEECCSSSSE---EEEE
T ss_pred CCccccccccCCccccHHHHHHHHHhhhhcCCcEEEEECccccc-CCccccceeEEECCCCCEeccCCCCCCc---EEEE
Confidence 6677766654 34455668899999999999999999998 557899999999 899999999887653 5789
Q ss_pred EEecccccccccC
Q 014523 76 QVDLDAVAGFRGS 88 (423)
Q Consensus 76 ~vDle~vr~~R~~ 88 (423)
+||++.++..|..
T Consensus 272 ~id~~~~~~~R~~ 284 (303)
T 1uf5_A 272 AVDLDRCRELREH 284 (303)
T ss_dssp EEEGGGGHHHHTT
T ss_pred EEcHHHHHHHHhh
Confidence 9999999876754
No 28
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=98.33 E-value=3.3e-07 Score=91.07 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=68.8
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++... .+.+..+++..+.++++.+++||+.|.+ +.+.|+|+|+|+ ++|+++++.+.|+++ +++++||+
T Consensus 187 l~psaw~~~~--~~~~~~~~~arA~En~~~vv~an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~e~---il~a~idl 260 (334)
T 2dyu_A 187 IRISGYSTQV--NDQWILTNRSNAWHNLMYTVSVNLAGYD-NVFYYFGEGQICNFDGTTLVQGHRNPWE---IVTGEIYP 260 (334)
T ss_dssp EEEESSCTTS--HHHHHHHHHHHHHHHTCEEEEEECSBSS-SSCCCCCEEEEECTTSCEEEECCCCTTC---EEEEEECH
T ss_pred EEeCCCCCCc--HHHHHHHHHHHHHhCCCEEEEECCCcCC-CCeeeeeEEEEECCCCCEeeecCCCCCe---EEEEEEcH
Confidence 3678776543 3577889999999999999999999999 678899999999 899999999888653 57899999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 261 ~~~~~~R~~ 269 (334)
T 2dyu_A 261 KMADNARLS 269 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 988776643
No 29
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=98.33 E-value=4e-07 Score=87.38 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=69.6
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...++. ....+++..+.+++++.+++|+.|.+++.+.|+|+|+|+ ++|+++++.+. .+ .+++++||+
T Consensus 174 ~~ps~~~~~~~~~-~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G~v~~~~~~-~e---~~l~~~id~ 248 (276)
T 2w1v_A 174 VYPGAFNLTTGPA-HWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGT-EE---TILYSDIDL 248 (276)
T ss_dssp EEECCCCTTHHHH-HHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEECTTSCEEEECCS-SS---EEEEEEEEH
T ss_pred EECCcCCCcCCHH-HHHHHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEECCCCCEeEEcCC-CC---eEEEEEEcH
Confidence 4788888877664 456789999999999999999999997688999999999 79999999986 33 467999999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 249 ~~~~~~R~~ 257 (276)
T 2w1v_A 249 KKLAEIRQQ 257 (276)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988766643
No 30
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.32 E-value=9.5e-07 Score=93.30 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=61.4
Q ss_pred HHHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhc
Q 014523 135 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFA 214 (423)
Q Consensus 135 ei~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~ 214 (423)
.+.......|++++ |.++++|+||||+||+++|.++ .++ +|..
T Consensus 215 ~~~~~~i~~i~~~v---~~~kvlvalSGGvDSsvla~ll-------~~~--------------~G~~------------- 257 (527)
T 3tqi_A 215 HIIEDSIRDIQEKV---GKEQVIVGLSGGVDSAVTATLV-------HKA--------------IGDQ------------- 257 (527)
T ss_dssp HHHHHHHHHHHHHH---TTSCEEEECTTTHHHHHHHHHH-------HHH--------------HGGG-------------
T ss_pred HHHHHHHHHHHHhc---CCCeEEEEEecCcCHHHHHHHH-------HHH--------------hCCe-------------
Confidence 34444455555555 3488999999999999999999 466 5533
Q ss_pred CCeEEEEEeCCCCCCHHHHHHHHH-HHHHhCCceEEEecHHHH
Q 014523 215 KRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 215 ~~~v~tv~m~s~~SS~~t~~~A~~-LA~~iG~~h~~i~Id~~v 256 (423)
++++++.....+..+.+.+.+ +|+.+|++|+.+++++.+
T Consensus 258 ---v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~ 297 (527)
T 3tqi_A 258 ---LVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRF 297 (527)
T ss_dssp ---EEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHH
T ss_pred ---EEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHH
Confidence 889999765545455566655 999999999999998765
No 31
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.24 E-value=1.3e-06 Score=89.97 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=68.5
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
.+++|++|||+|||++|+++ .++ |.+ +++++|-... .++.
T Consensus 15 ~KVVVA~SGGlDSSv~a~~L-------ke~---------------G~e----------------Viavt~d~Gq--~~El 54 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWL-------CEK---------------GFD----------------VIAYVANVGQ--KDDF 54 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHT---------------TCE----------------EEEEEEESSC--CCCH
T ss_pred CCEEEEeCCcHHHHHHHHHH-------HHC---------------CCe----------------EEEEEEEcCC--HHHH
Confidence 56999999999999999988 333 543 8888886543 2678
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHHH-HHH-HHhhh-h--cCCCC---------ccc---cchhhcCCCchhhhheee
Q 014523 234 MRAKKLADEIGS-WHLDVSIDTVVS-AFL-SLFQT-L--TGKRP---------RYK---LDEVDMGMTYEELSVYGR 292 (423)
Q Consensus 234 ~~A~~LA~~iG~-~h~~i~Id~~v~-a~~-~~~~~-~--~g~~p---------~f~---tDE~dmGmtY~~ld~~~r 292 (423)
++|+++|+.+|+ +|+++|+.+.+. .+. ..+.. . .|..| .++ .-..++|.+|..++++++
T Consensus 55 e~A~~vA~~lGi~~~~VvDl~eef~~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~k 131 (421)
T 1vl2_A 55 VAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGK 131 (421)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHcCCceEEEEecHHHHHHhhhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeC
Confidence 999999999999 999999987553 222 11111 0 11111 111 123458999999999974
No 32
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.22 E-value=3e-06 Score=89.24 Aligned_cols=84 Identities=29% Similarity=0.311 Sum_probs=65.9
Q ss_pred CCHHHHHhcHHHHHHHHHHHhC--CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 208 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg--~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~ 208 (423)
.+.++....+...|.+-+++.- -..+.+.||||+||+++|+++ .+. + .+
T Consensus 217 ~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala-------~~~---------------~-~~------ 267 (513)
T 1jgt_A 217 LPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACA-------HRA---------------A-GE------ 267 (513)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHH-------HHH---------------H-SS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHH-------HHh---------------C-CC------
Confidence 4567888888999999988743 247999999999999999998 344 2 22
Q ss_pred chhhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHH
Q 014523 209 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 209 ~~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
+.|+.++..+ ..+...|+++|+.+|+.|+.+++++
T Consensus 268 ---------v~tfti~~~~--~~E~~~A~~vA~~lg~~h~~i~i~~ 302 (513)
T 1jgt_A 268 ---------LDTVSMGTDT--SNEFREARAVVDHLRTRHREITIPT 302 (513)
T ss_dssp ---------CEEEEEECSS--CCCHHHHHHHHHHHTCEEEEEECCH
T ss_pred ---------ceEEEcCCCC--CCHHHHHHHHHHHhCCCcEEEECCH
Confidence 4555555543 3568899999999999999999986
No 33
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=98.20 E-value=1.1e-06 Score=84.90 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=67.5
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...++. ....+.+..+.+++++.+++|+.|.+.+.+.|+|+|+|+ ++|+++++.+. .+ .+++++||+
T Consensus 190 ~~ps~~~~~~~~~-~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G~vl~~~~~-~e---~~l~~~id~ 264 (291)
T 1f89_A 190 IYPSAFNTVTGPL-HWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPRGKIVAEAGE-GE---EIIYAELDP 264 (291)
T ss_dssp EEECCCBTTHHHH-HHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEECTTSCEEEECCS-SS---EEEEEEECH
T ss_pred EECCcCCCCCcHH-HHHHHHHHHHHHcCCEEEEecCccCCCCCCeeeeEEEEECCCCCEEEecCC-CC---eEEEEEECH
Confidence 4678888776664 346788999999999999999999665778999999999 79999999875 33 467899999
Q ss_pred cccccccc
Q 014523 80 DAVAGFRG 87 (423)
Q Consensus 80 e~vr~~R~ 87 (423)
+.++..|.
T Consensus 265 ~~~~~~R~ 272 (291)
T 1f89_A 265 EVIESFRQ 272 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876553
No 34
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.19 E-value=1.7e-06 Score=80.15 Aligned_cols=64 Identities=23% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHH
Q 014523 153 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 232 (423)
Q Consensus 153 ~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t 232 (423)
.++++|++|||+||++++.++ .. .+.+ +.++++...... +
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll--------~~--------------~g~~----------------v~~~~v~~~~~~--~ 45 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVIL--------KK--------------LGYN----------------PHLITINFGVIP--S 45 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHH--------HH--------------TTEE----------------EEEEEEECSSSC--T
T ss_pred CCeEEEEEECcHHHHHHHHHH--------HH--------------cCCC----------------eEEEEEeCCCch--H
Confidence 467999999999999999877 22 3432 667776654433 6
Q ss_pred HHHHHHHHHHhCCceEEEecHHHH
Q 014523 233 RMRAKKLADEIGSWHLDVSIDTVV 256 (423)
Q Consensus 233 ~~~A~~LA~~iG~~h~~i~Id~~v 256 (423)
.+.|+++|+.+|++|+.++++..+
T Consensus 46 ~~~~~~~a~~lgi~~~~~~~~~~~ 69 (203)
T 3k32_A 46 YKLAEETAKILGFKHKVITLDRKI 69 (203)
T ss_dssp THHHHHHHHHHTCEEEEEECCTHH
T ss_pred HHHHHHHHHHhCCCEEEEECCHHH
Confidence 789999999999999999998653
No 35
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.07 E-value=8.5e-06 Score=85.49 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCHHHHHhcHHHHHHHHHHHhC--CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPT 208 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg--~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~ 208 (423)
.+.++....+...|.+-+++.- -..+.+.||||+||+++|+++. +. + .+
T Consensus 214 ~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~-------~~---------------~-~~------ 264 (503)
T 1q15_A 214 LPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALAS-------RH---------------F-KK------ 264 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHT-------TT---------------C-SE------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHH-------Hh---------------C-CC------
Confidence 4567778888888888877642 3468899999999999999882 32 2 11
Q ss_pred chhhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHH--HHHHHH
Q 014523 209 ESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDT--VVSAFL 260 (423)
Q Consensus 209 ~~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~--~v~a~~ 260 (423)
+.|+.++..++ .+...|+++|+.+|+.|+.+++++ +++.+.
T Consensus 265 ---------~~~~t~~~~~~--~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~ 307 (503)
T 1q15_A 265 ---------LNTYSIGTELS--NEFEFSQQVADALGTHHQMKILSETEVINGII 307 (503)
T ss_dssp ---------EEEEEEEETTB--CCHHHHHHHHHHHTCEEEEEEECHHHHHHHHH
T ss_pred ---------cEEEEEeCCCc--cHHHHHHHHHHHhCCceEEEECCHHHHHHHHH
Confidence 56666555432 568899999999999999999987 444443
No 36
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=98.07 E-value=2e-06 Score=88.21 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=69.2
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCceEEcCCeeee-eCCceeeeeCCCccCCcceEEEEEec
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDL 79 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~~rlvfDG~S~I~-~nG~lvaq~~qFs~~dv~v~~a~vDl 79 (423)
+|+|+++...|+. .+..+++..+.++++.+++||+.|.+++...|.|+|+|+ ++|+++++.+. .+ .+++++||+
T Consensus 190 ~~psa~~~~~~~~-~~~~~~~arA~En~~~vv~an~~G~~~~~~~~~G~S~ii~P~G~vla~~~~-~e---~il~a~idl 264 (440)
T 1ems_A 190 SFPSAFTLNTGLA-HWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSE-RV---DMCFAEIDL 264 (440)
T ss_dssp ECCBCCCHHHHHH-HHHHHHHHHHHHHTCEEEECBBEEEEETTEEEECCCEEECTTSCEEEECCS-SS---CEEEEEEEH
T ss_pred EECCcCCCCCcHH-HHHHHHHHHHHhcCcEEEEecccccCCCCceeeeeeEEECCCCCeeccCCC-CC---cEEEEEeCH
Confidence 4788887776664 677789999999999999999999886678999999999 89999999873 22 468999999
Q ss_pred ccccccccC
Q 014523 80 DAVAGFRGS 88 (423)
Q Consensus 80 e~vr~~R~~ 88 (423)
+.++..|..
T Consensus 265 ~~~~~~R~~ 273 (440)
T 1ems_A 265 SYVDTLREM 273 (440)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988766643
No 37
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.04 E-value=9.6e-06 Score=83.08 Aligned_cols=100 Identities=18% Similarity=0.069 Sum_probs=68.0
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCC-CCCHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-NSSQET 232 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~-~SS~~t 232 (423)
.+++|++|||+||++++.++. + .|.+ ++++++... ..++.+
T Consensus 188 ~kvlvalSGGvDS~vll~ll~-------~---------------~G~~----------------v~av~v~~~~~~~~~~ 229 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTM-------K---------------RGVS----------------VEAVHFHSPPFTSERA 229 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHH-------H---------------BTEE----------------EEEEEEECTTTSCHHH
T ss_pred CeEEEEeCCCChHHHHHHHHH-------H---------------cCCc----------------EEEEEEeCCCCCCHHH
Confidence 469999999999999999882 2 2432 788888653 456788
Q ss_pred HHHHHHHHHHh-----CCceEEEecHHHHHHHHHHhhhhc----CCCCccc---cchhhcCCCchhhhhee
Q 014523 233 RMRAKKLADEI-----GSWHLDVSIDTVVSAFLSLFQTLT----GKRPRYK---LDEVDMGMTYEELSVYG 291 (423)
Q Consensus 233 ~~~A~~LA~~i-----G~~h~~i~Id~~v~a~~~~~~~~~----g~~p~f~---tDE~dmGmtY~~ld~~~ 291 (423)
.+.++++|+.| |++|+.+++++.+.++........ -+.-.|+ .-..+.|.++..+++.+
T Consensus 230 ~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~ 300 (413)
T 2c5s_A 230 KQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESL 300 (413)
T ss_dssp HHHHHHHHHHHGGGSSCEEEEEEECHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 89999999999 999999999988765433221100 0000111 11235688888887754
No 38
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=98.03 E-value=3.3e-06 Score=86.23 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=65.4
Q ss_pred CcccCCccccccHHHHHHHHHHHHHhcCCeEEEEcCCCCCC---------------CceEEcCCeeee-eCCceeeeeCC
Q 014523 1 MNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQ 64 (423)
Q Consensus 1 ~N~SaSh~~lgK~~~R~~Li~~~s~k~g~~yvYaN~~G~d~---------------~rlvfDG~S~I~-~nG~lvaq~~q 64 (423)
+|+||++...++ .....+.+..+.++++.++++|++|.+. +...|.|+|+|+ ++|+++++.+.
T Consensus 255 l~psa~~~~~~~-~~w~~l~raRAiEn~~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~~~f~G~S~IidP~G~vla~~~~ 333 (405)
T 2vhh_A 255 FNPSATIGRLSE-PLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSR 333 (405)
T ss_dssp EEEECCBCTTTH-HHHHHHHHHHHHHHTSEEEEEECEECCCCC-----------------EECCCCCBCTTSCBCCCCCS
T ss_pred EEcccCCCCCCH-HHHHHHHHHHHHHcCceEEEeccccccccccccccccCccccccCceeccccceECCCCCEeeccCC
Confidence 478887765554 3556688899999999999999999873 236899999999 89999999998
Q ss_pred CccCCcceEEEEEeccccccccc
Q 014523 65 FSLRDVEVVVAQVDLDAVAGFRG 87 (423)
Q Consensus 65 Fs~~dv~v~~a~vDle~vr~~R~ 87 (423)
|.++ +++++||++.++..|.
T Consensus 334 ~~e~---il~aeiDl~~~~~~R~ 353 (405)
T 2vhh_A 334 DKDG---LLVVELDLNLCRQVKD 353 (405)
T ss_dssp SSCE---EEEEEEETTHHHHHHH
T ss_pred CCCe---EEEEEECHHHHHHHHH
Confidence 8664 5789999999876664
No 39
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.02 E-value=7.2e-06 Score=83.90 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=52.4
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
++++|++|||+||++++.++ .++ .+.+ ++++++.... .++.
T Consensus 1 ~kVvva~SGG~DSsvll~ll-------~~~--------------~g~~----------------V~av~vd~g~--~~e~ 41 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWL-------KET--------------YRAE----------------VIAFTADIGQ--GEEV 41 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH--------------HTCE----------------EEEEEEESSC--SSCH
T ss_pred CcEEEEEeChHHHHHHHHHH-------HHh--------------hCCc----------------EEEEEEeCCC--HHHH
Confidence 36899999999999999988 354 3433 7888887655 4679
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHH
Q 014523 234 MRAKKLADEIGS-WHLDVSIDTVV 256 (423)
Q Consensus 234 ~~A~~LA~~iG~-~h~~i~Id~~v 256 (423)
+.|+++|+++|+ +|+++++++.+
T Consensus 42 e~a~~~A~~lGi~~~~vvd~~~ef 65 (400)
T 1kor_A 42 EEAREKALRTGASKAIALDLKEEF 65 (400)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeCcHHH
Confidence 999999999999 79999998655
No 40
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.00 E-value=1.7e-05 Score=73.53 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=50.8
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..++|++|||.||++++.|+. +. +. + +..+++-+....++|.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~-------~~---------------~~-~---------------v~~v~vd~g~~~~e~~ 86 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVN-------QI---------------RP-D---------------IPVILTDTGYLFPETY 86 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHH-------HH---------------ST-T---------------CEEEEEECSCBCHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHH-------Hh---------------CC-C---------------CeEEEeeCCCCCHHHH
Confidence 579999999999999999882 33 22 2 5566665555568999
Q ss_pred HHHHHHHHHhCCceEEEecHHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
+.++++|+.+|++++.+..+..
T Consensus 87 ~~v~~~~~~~gi~~~v~~~~~~ 108 (215)
T 1sur_A 87 RFIDELTDKLKLNLKVYRATES 108 (215)
T ss_dssp HHHHHHHHHTTCEEEEEECSSC
T ss_pred HHHHHHHHHhCCcEEEEeCCCC
Confidence 9999999999999999987643
No 41
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=97.95 E-value=2.5e-05 Score=82.91 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=48.2
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..+.+.||||+||+++|+|+. +.... ....+..+.. +.| .++|+.++...+ .++
T Consensus 227 vpvgv~LSGGlDSS~iaala~-------~~~~~---~~~~~~~~~a-----~~~---------~l~tfsig~~~~--~E~ 280 (553)
T 1ct9_A 227 VPYGVLLSGGLDSSIISAITK-------KYAAR---RVEDQERSEA-----WWP---------QLHSFAVGLPGS--PDL 280 (553)
T ss_dssp SCEEEECCSSHHHHHHHHHHH-------HHC---------------------------------CEEEEEESTTC--HHH
T ss_pred CceEEeCCCCccHHHHHHHHH-------Hhhcc---cccccccccc-----ccC---------ceeEEEecCCCC--cHH
Confidence 468899999999999999983 43110 0000000000 000 156777766544 578
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~ 254 (423)
..|+++|+.||+.|++++++.
T Consensus 281 ~~A~~vA~~lg~~h~~i~~~~ 301 (553)
T 1ct9_A 281 KAAQEVANHLGTVHHEIHFTV 301 (553)
T ss_dssp HHHHHHHHHHTCEEEEEECCH
T ss_pred HHHHHHHHHhCCCCEEEECCH
Confidence 899999999999999999865
No 42
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=97.95 E-value=1.3e-05 Score=78.98 Aligned_cols=86 Identities=17% Similarity=0.032 Sum_probs=56.4
Q ss_pred HHhcHHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcC
Q 014523 136 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAK 215 (423)
Q Consensus 136 i~~~~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~ 215 (423)
+......++.+|---...++++|++|||+||++++.++. +..+. .+.+
T Consensus 7 ~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~-------~~~~~-----------~g~~-------------- 54 (317)
T 1wy5_A 7 VIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLL-------KLKNY-----------FSLK-------------- 54 (317)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHH-------HSTTT-----------TTCS--------------
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHH-------HHHHH-----------cCCC--------------
Confidence 344444444444111234679999999999999998883 22000 1222
Q ss_pred CeEEEEEeCCCC--CCHHHHHHHHHHHHHhCCceEEEecHH
Q 014523 216 RIFYTVFMGSEN--SSQETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 216 ~~v~tv~m~s~~--SS~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
.+.++++.... .+.++.+.++++|+.+|++|++++++.
T Consensus 55 -~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~~~~ 94 (317)
T 1wy5_A 55 -EVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDV 94 (317)
T ss_dssp -EEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCH
T ss_pred -EEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 15666665332 356788899999999999999999874
No 43
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=97.89 E-value=1.1e-05 Score=83.69 Aligned_cols=100 Identities=17% Similarity=0.081 Sum_probs=67.3
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
++++|++|||+||++++.++ .+ .+.+ ++++++-......++.
T Consensus 11 ~KVvVA~SGGlDSSvll~~L-------~e---------------~G~e----------------Viavtvd~Gq~~~~el 52 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWM-------RQ---------------KGAV----------------PYAYTANLGQPDEEDY 52 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHH-------HH---------------TTCE----------------EEEEEEECCCTTCSCT
T ss_pred CeEEEEEcChHHHHHHHHHH-------HH---------------cCCE----------------EEEEEEEcCCCCHHHH
Confidence 57999999999999999888 23 2333 7777775443334578
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHHHH-HHHHhhh---h--cCC------CC-----ccc---cchhhcCCCchhhhhee
Q 014523 234 MRAKKLADEIGS-WHLDVSIDTVVSA-FLSLFQT---L--TGK------RP-----RYK---LDEVDMGMTYEELSVYG 291 (423)
Q Consensus 234 ~~A~~LA~~iG~-~h~~i~Id~~v~a-~~~~~~~---~--~g~------~p-----~f~---tDE~dmGmtY~~ld~~~ 291 (423)
+.|+++|+++|+ +|+++|+++.+.. ....+.. . .|+ +| .|+ .-..++|.++..+++.+
T Consensus 53 e~a~~~A~~lGi~~~~vvD~~eef~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~ 131 (455)
T 1k92_A 53 DAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTY 131 (455)
T ss_dssp THHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCT
T ss_pred HHHHHHHHHhCCCeEEEEeChHHHHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 899999999999 8999999865542 1122221 0 222 11 122 12345799999999975
No 44
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=97.84 E-value=1.8e-05 Score=81.23 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=65.7
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
++++|++|||+||++++.++ .+ .+.+ ++++++..... ++.
T Consensus 6 ~kVvvalSGGlDSsvll~lL-------~e---------------~G~e----------------V~av~vd~g~~--~e~ 45 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWL-------KE---------------QGYD----------------VIAYLANIGQK--EDF 45 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHH-------HH---------------TTEE----------------EEEEEEESSCC--CCH
T ss_pred CeEEEEEcChHHHHHHHHHH-------HH---------------cCCE----------------EEEEEEECCcH--HHH
Confidence 57999999999999999888 22 2332 78888875432 568
Q ss_pred HHHHHHHHHhCCc-eEEEecHHHHHH-HH-HHhhh--------hcCCC-Cc---cc---cchhhcCCCchhhhhee
Q 014523 234 MRAKKLADEIGSW-HLDVSIDTVVSA-FL-SLFQT--------LTGKR-PR---YK---LDEVDMGMTYEELSVYG 291 (423)
Q Consensus 234 ~~A~~LA~~iG~~-h~~i~Id~~v~a-~~-~~~~~--------~~g~~-p~---f~---tDE~dmGmtY~~ld~~~ 291 (423)
+.|+++|+++|++ |+++++++.+.. +. ..+.. ..+.. ++ ++ .-..+.|.++..+++.+
T Consensus 46 e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 46 EEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 9999999999998 889999865432 21 12211 01111 11 22 11235789999999886
No 45
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.75 E-value=2.7e-05 Score=74.43 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=43.9
Q ss_pred CCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEe--CCC-CC
Q 014523 152 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM--GSE-NS 228 (423)
Q Consensus 152 g~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m--~s~-~S 228 (423)
+..++++.+|||.||+++++++ .++ |.+ +.++++ +.. .+
T Consensus 3 ~~MKvvvl~SGGkDSs~al~~l-------~~~---------------G~e----------------V~~L~~~~~~~~~s 44 (237)
T 3rjz_A 3 GLADVAVLYSGGKDSNYALYWA-------IKN---------------RFS----------------VKFLVTMVSENEES 44 (237)
T ss_dssp CCSEEEEECCSSHHHHHHHHHH-------HHT---------------TCE----------------EEEEEEEECC----
T ss_pred CCCEEEEEecCcHHHHHHHHHH-------HHc---------------CCe----------------EEEEEEEcCCCCCc
Confidence 3457999999999999999988 333 433 444432 221 11
Q ss_pred ---CHHHHHHHHHHHHHhCCceEEEecHHH
Q 014523 229 ---SQETRMRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 229 ---S~~t~~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
.....+.|+.+|+.||++|+.+++...
T Consensus 45 ~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~ 74 (237)
T 3rjz_A 45 YMYHTINANLTDLQARALGIPLVKGFTQGE 74 (237)
T ss_dssp ----CCSSSHHHHHHHHHTCCEEEEEC---
T ss_pred cccCCccHHHHHHHHHHcCCCEEEEECCCC
Confidence 112356899999999999999999753
No 46
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=97.66 E-value=9.7e-05 Score=76.62 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=52.1
Q ss_pred HHHHHhC----CCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEE
Q 014523 146 DYLRRSG----ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 221 (423)
Q Consensus 146 Dylrrsg----~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv 221 (423)
.++++.+ ..+++|++|||+||++.+.++. +.... .+.+ ++++
T Consensus 7 ~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~-------~~~~~-----------~~~~----------------v~av 52 (464)
T 3a2k_A 7 AFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFL-------SLRDE-----------WKLQ----------------VIAA 52 (464)
T ss_dssp HHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHH-------HHHHT-----------TTCB----------------CEEE
T ss_pred HHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHH-------HHHHH-----------cCCe----------------EEEE
Confidence 4455443 3579999999999999998883 32110 2222 5666
Q ss_pred EeCCCCC---CHHHHHHHHHHHHHhCCceEEEecH
Q 014523 222 FMGSENS---SQETRMRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 222 ~m~s~~S---S~~t~~~A~~LA~~iG~~h~~i~Id 253 (423)
++-.... |.++.+.++++|+.+|++|++++++
T Consensus 53 hvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~ 87 (464)
T 3a2k_A 53 HVDHMFRGRESEEEMEFVKRFCVERRILCETAQID 87 (464)
T ss_dssp EEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEECCCCccccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 6654333 4577889999999999999998886
No 47
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.63 E-value=7e-05 Score=73.86 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=62.0
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
.+++++||| +||+++|+++ .+ .|.+ +++++|- .++.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll-------~~---------------~G~~----------------v~~v~~~---~~~~~~ 217 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLM-------MK---------------RGVE----------------VIPVYIG---KDDKNL 217 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHH-------HH---------------BTCE----------------EEEEEES---CSSHHH
T ss_pred CcEEEEEeC-CcHHHHHHHH-------Hh---------------CCCe----------------EEEEEEE---ECHHHH
Confidence 357999999 9999999988 23 2544 8999998 355778
Q ss_pred HHHHHHHHHh-------CCceEEEe-cHHHHHHHHHHhhhhcCCCCccccchhhcCCCchhhhheee
Q 014523 234 MRAKKLADEI-------GSWHLDVS-IDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGR 292 (423)
Q Consensus 234 ~~A~~LA~~i-------G~~h~~i~-Id~~v~a~~~~~~~~~g~~p~f~tDE~dmGmtY~~ld~~~r 292 (423)
+.|+++|+.| |++++.+| ..+.+ .+ .+++|..+..++|++.
T Consensus 218 ~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~---------------~~---A~~~ga~~I~tG~~~~ 266 (307)
T 1vbk_A 218 EKVRSLWNLLKRYSYGSKGFLVVAESFDRVL---------------KL---IRDFGVKGVIKGLRPN 266 (307)
T ss_dssp HHHHHHHHHHHTTCTTSCCCCEEESSHHHHH---------------HH---HHHHTCCEEECCCCGG
T ss_pred HHHHHHHHHHhhhccCCCCcEEEeCCCHHHH---------------HH---HHHcCCCEEEECcccc
Confidence 9999999999 89999999 87766 11 2347888888888763
No 48
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.54 E-value=0.00021 Score=68.11 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=51.1
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..++|++|||+||++++.|+ .+. .. + +..+++-+....++|.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll-------~~~---------------~~-~---------------v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLV-------NQI---------------RP-D---------------IPVILTDTGYLFPETY 87 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHH-------HHH---------------ST-T---------------CEEEECCCSCBCHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHH-------HHh---------------CC-C---------------CeEEEecCCCCCHHHH
Confidence 57999999999999999888 233 22 2 5677777666678999
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~ 254 (423)
+.++++|+.+|++++++..+.
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCSS
T ss_pred HHHHHHHHHhCCceEEEcCCC
Confidence 999999999999999887664
No 49
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.38 E-value=0.00031 Score=72.29 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEe
Q 014523 144 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 223 (423)
Q Consensus 144 L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m 223 (423)
|.+++.. .++++|++|||+||++.+.++. +.... +.+. .++++++
T Consensus 6 l~~~l~~--~~~vlVa~SGG~DS~~Ll~ll~-------~~~~~----------~~g~----------------~v~avhv 50 (433)
T 1ni5_A 6 LNRQLLT--SRQILVAFSGGLDSTVLLHQLV-------QWRTE----------NPGV----------------ALRAIHV 50 (433)
T ss_dssp HHHHHTT--CSEEEEECCSBHHHHHHHHHHH-------HHHTT----------STTC----------------EEEEEEE
T ss_pred HHHhcCC--CCEEEEEEcchHHHHHHHHHHH-------HHHHh----------cCCC----------------eEEEEEE
Confidence 5555544 3679999999999999998883 32100 0111 2677777
Q ss_pred CCC--CCCHHHHHHHHHHHHHhCCceEEEecHH
Q 014523 224 GSE--NSSQETRMRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 224 ~s~--~SS~~t~~~A~~LA~~iG~~h~~i~Id~ 254 (423)
-.. ..|.++.+.++++|+.+|++|++++++.
T Consensus 51 dhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 83 (433)
T 1ni5_A 51 HHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (433)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred ECCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 533 2355678899999999999999988763
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0012 Score=65.04 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHHHHHhCC--CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEE
Q 014523 143 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYT 220 (423)
Q Consensus 143 ~L~Dylrrsg~--~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~t 220 (423)
-|...+++-+. ..++|++|||.||++++.|+. +++.. ..+.++. ....+..+ ..+-...+..
T Consensus 41 il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~-------~~l~~---~~~~~~~-~~~~~~~~-----~~~~~~~i~v 104 (306)
T 2wsi_A 41 LLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYL-------SCLWE---YFFIKAQ-NSQFDFEF-----QSFPMQRLPT 104 (306)
T ss_dssp HHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHH-------HHHHH---HHHHHHH-HC-------------CCCCCEEE
T ss_pred HHHHHHHHcccccCCEEEEecCCHHHHHHHHHHH-------HHHhh---hcccccc-cccccccc-----cccCCCCeeE
Confidence 44444554443 579999999999999999883 43210 0000000 00000000 0000012678
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCceEEEecH
Q 014523 221 VFMGSENSSQETRMRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 221 v~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id 253 (423)
+|.-+....++|.+.++++++.+|+.++++..+
T Consensus 105 v~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~ 137 (306)
T 2wsi_A 105 VFIDQEETFPTLENFVLETSERYCLSLYESQRQ 137 (306)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 888887788999999999999999999888655
No 51
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=96.99 E-value=0.003 Score=62.65 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEE
Q 014523 140 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 219 (423)
Q Consensus 140 ~a~~L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~ 219 (423)
...-|+..+.. ..+++|++|||.||++++.|+ .+++.. ...+ +.
T Consensus 35 a~~ilr~~~~~--~~~ivVa~SGGkDS~vLL~Ll-------~~~~~~------------~~~~---------------i~ 78 (325)
T 1zun_A 35 SIHIIREVAAE--FDNPVMLYSIGKDSAVMLHLA-------RKAFFP------------GKLP---------------FP 78 (325)
T ss_dssp HHHHHHHHHHH--CSSEEEECCSSHHHHHHHHHH-------HHHHTT------------SCCS---------------SC
T ss_pred HHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHH-------HHhccc------------cCCC---------------EE
Confidence 33444444444 358999999999999999888 354210 0111 45
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecHHH
Q 014523 220 TVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 255 (423)
Q Consensus 220 tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~Id~~ 255 (423)
.++.-+....++|.+.++++|+.+|++++++..+..
T Consensus 79 vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~ 114 (325)
T 1zun_A 79 VMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG 114 (325)
T ss_dssp EEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH
Confidence 566666666789999999999999999999987643
No 52
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0023 Score=61.30 Aligned_cols=73 Identities=7% Similarity=-0.088 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEe
Q 014523 144 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 223 (423)
Q Consensus 144 L~Dylrrsg~~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m 223 (423)
|+..+.+. ..++|++|||.||++++.|+ .+. .... ..+..+++
T Consensus 34 l~~a~~~~--~~v~va~SGGkDS~vLL~ll-------~~~---------------~~~~-------------~~i~vv~i 76 (261)
T 2oq2_A 34 IAWSIVTF--PHLFQTTAFGLTGLVTIDML-------SKL---------------SEKY-------------YMPELLFI 76 (261)
T ss_dssp HHHHHHHC--SSEEEECCCCHHHHHHHHHH-------HHH---------------TTTS-------------CCCEEEEE
T ss_pred HHHHHHHC--CCEEEEecCCHHHHHHHHHH-------HHh---------------CccC-------------CCeeEEEe
Confidence 33334443 47999999999999999888 343 2100 01566777
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----ceEEEecH
Q 014523 224 GSENSSQETRMRAKKLADEIGS----WHLDVSID 253 (423)
Q Consensus 224 ~s~~SS~~t~~~A~~LA~~iG~----~h~~i~Id 253 (423)
-+..-.++|.+.++++++.+|+ +++++..+
T Consensus 77 Dtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~ 110 (261)
T 2oq2_A 77 DTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPD 110 (261)
T ss_dssp CCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECST
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecC
Confidence 7766678999999999999999 88888765
No 53
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.38 E-value=0.013 Score=56.37 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=49.8
Q ss_pred CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccCCCCCCCchhhhcCCeEEEEEeCCCCCCHHHH
Q 014523 154 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 233 (423)
Q Consensus 154 ~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~~~~~p~~~~el~~~~v~tv~m~s~~SS~~t~ 233 (423)
..++|++| |.||++++.|+. +. +.+ +..+++-+....++|.
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~-------~~---------------~~~----------------i~vv~iDtg~~~~et~ 95 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAW-------KL---------------NRN----------------VKVFSLDTGRLHPETY 95 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHH-------HH---------------CTT----------------CCEEEECCSCCCHHHH
T ss_pred CCEEEEee-cHHHHHHHHHHH-------Hh---------------CCC----------------ceEEEEeCCCCCHHHH
Confidence 68999999 999999998882 32 222 4566666666678999
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 014523 234 MRAKKLADEIGSWHLDVSIDT 254 (423)
Q Consensus 234 ~~A~~LA~~iG~~h~~i~Id~ 254 (423)
+.++++++.+|++++++..+.
T Consensus 96 ~~v~~~~~~~gi~l~v~~~~~ 116 (275)
T 2goy_A 96 RFIDQVREHYGIAIDVLSPDP 116 (275)
T ss_dssp HHHHHHHHHHTCCCEEECCCH
T ss_pred HHHHHHHHHHCCeEEEEeCCc
Confidence 999999999999999887764
No 54
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=94.10 E-value=0.13 Score=50.85 Aligned_cols=101 Identities=9% Similarity=0.050 Sum_probs=60.4
Q ss_pred HHHHhcHHHHHHHHHHHhCC--CceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhccC-CCCCCCch
Q 014523 134 EEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA-NGEFPTES 210 (423)
Q Consensus 134 eei~~~~a~~L~Dylrrsg~--~g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~~~v~~d~~~ig~~~-~~~~p~~~ 210 (423)
+.|...+..-|+.-+.+-+. ..++|+.|||.||++++.|+ .+++... ++.+...-..+. ..-.|.
T Consensus 37 ~qir~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~-------~kal~~~---~~~~~~~~~~~~~~~~~p~-- 104 (308)
T 3fwk_A 37 RAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLY-------LSCLWEY---YIVKLSQSQFDGKFHRFPL-- 104 (308)
T ss_dssp HHHHHHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHH-------HHHHHHH---HTCCE----------------
T ss_pred HHHHHHHHHHHHHHHHHcccccCCEEEEecCChhHHHHHHHH-------HHHhhhh---cccccccccccccccccCC--
Confidence 44555444556666666554 57999999999999999988 3553100 000000000000 000000
Q ss_pred hhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEe
Q 014523 211 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 251 (423)
Q Consensus 211 ~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~ 251 (423)
..+-.+|.-|..--+||.+-..++++.+|...+++.
T Consensus 105 -----~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v~~ 140 (308)
T 3fwk_A 105 -----TKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESD 140 (308)
T ss_dssp --------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEECC
T ss_pred -----CCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 126778888888889999999999999999876653
No 55
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=40.78 E-value=16 Score=31.12 Aligned_cols=87 Identities=10% Similarity=0.254 Sum_probs=52.5
Q ss_pred hhcCCCchhhhheeeeee-----ecCCChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhccccccCCCccccCCCC
Q 014523 278 VDMGMTYEELSVYGRLRK-----IFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 352 (423)
Q Consensus 278 ~dmGmtY~~ld~~~rlr~-----~~~~gp~~m~~~l~~~w~~~~~~~ei~~kvk~Ff~~y~~nqhKrt~l~Ps~h~e~ys 352 (423)
.++|++-.++-.++.+.. ....+|..+...+ .+++.+|...+.+--..=.+.+-.+. +.-.
T Consensus 26 ~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~------~~s~~~v~~~L~~L~~KGlI~i~~~~--------d~~g 91 (135)
T 2v79_A 26 KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGM------SISVEECTNRLRMFIQKGFLFIEECE--------DQNG 91 (135)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS------SSCHHHHHHHHHHHHHHTSCEEEEEE--------CTTC
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEeEe--------cCCC
Confidence 357777777777766654 3455666666554 36888888888754444333332221 0002
Q ss_pred CCCccccchhhccCCCCCcchhhHHHHHHhhhCCC
Q 014523 353 PEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 387 (423)
Q Consensus 353 pDdnr~d~r~fly~~~~~~~f~~id~~~~~~~~~~ 387 (423)
--.++|||.|. |.|++.+++.-+.+.
T Consensus 92 ~~~~~ydL~pL---------~ekL~~~~~~~~~~~ 117 (135)
T 2v79_A 92 IKFEKYSLQPL---------WGKLYEYIQLAQNQT 117 (135)
T ss_dssp CEEEEEECHHH---------HHHHHHHHHHHHC--
T ss_pred ceEEEeeHHHH---------HHHHHHHHHHHHHHH
Confidence 22368999998 789999997654433
No 56
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=31.42 E-value=45 Score=30.98 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCHHHHHhcHHHHHHHHHHHh---CCCceEEeccCCc
Q 014523 131 SPEEEIAFGPGCWLWDYLRRS---GASGFLLPLSGGA 164 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrs---g~~g~~l~LSGGi 164 (423)
...+++..+.|..|.+.++.. ...+++|+||||-
T Consensus 7 ~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgGs 43 (266)
T 1fs5_A 7 TTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGG 43 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCCC
Confidence 456789999999999999873 3347999999994
No 57
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=25.22 E-value=61 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=25.7
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 163 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGG 163 (423)
.+.+++..+.|..|.+.+++ ..++.|+||||
T Consensus 7 ~~~~~l~~~aA~~l~~~i~~--~~~~~i~lsgG 37 (242)
T 2bkx_A 7 QTYEELSQIAARITADTIKE--KPDAVLGLATG 37 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--CTTCEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHH--CCCeEEEECCC
Confidence 45678999999999999886 24689999999
No 58
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=24.88 E-value=50 Score=30.37 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCCCceEEeccCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 163 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~~g~~l~LSGG 163 (423)
...+++....+..|.+.+++ ...+.|+||||
T Consensus 8 ~~~~~l~~~aA~~i~~~i~~--~~~~~l~lsgG 38 (238)
T 1y89_A 8 PTADAVVKSLADDMLAYSQQ--GQPVHISLSGG 38 (238)
T ss_dssp SSHHHHHHHHHHHHHHHHTT--SSCEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCEEEEECCC
Confidence 35678888888888888876 34689999999
No 59
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=23.04 E-value=1.2e+02 Score=25.46 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=25.6
Q ss_pred EEEEeCCCCCCHHHH---HHHHHHHHHhCCceEEEecH
Q 014523 219 YTVFMGSENSSQETR---MRAKKLADEIGSWHLDVSID 253 (423)
Q Consensus 219 ~tv~m~s~~SS~~t~---~~A~~LA~~iG~~h~~i~Id 253 (423)
+.+|.-+.-..-+++ .+|+.|-+..|+.|.++||+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~ 39 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIA 39 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECT
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECC
Confidence 456665433333333 68999999999999999996
No 60
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=22.92 E-value=3.4e+02 Score=26.11 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHHHHhCCC-ceEEeccCCccHHHHHHHHHHHHHHHHHHHhcCc-----------------hhHHHHHHHhhccCCCCCC
Q 014523 146 DYLRRSGAS-GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGD-----------------EQVKADAIRIGRYANGEFP 207 (423)
Q Consensus 146 Dylrrsg~~-g~~l~LSGGiDSa~~A~lv~~mc~~~~~a~~~g~-----------------~~v~~d~~~ig~~~~~~~p 207 (423)
++|+.++.+ ..++++..|.+++.+-+- .+.+|++.|= +.|.+|++.+.
T Consensus 103 ~~L~~s~V~V~tVigFP~G~~~~~~Kv~------Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~-------- 168 (288)
T 3oa3_A 103 QYLQGTQVGVTCVIGFHEGTYSTDQKVS------EAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVR-------- 168 (288)
T ss_dssp HHTTTSSCEEEEEESTTTSCSCHHHHHH------HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHH--------
T ss_pred HHcCCCCCeEEEEeCCCCCCCcHHHHHH------HHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHH--------
Confidence 444333332 356788778766533221 1245555432 35666666543
Q ss_pred CchhhhcCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEe
Q 014523 208 TESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 251 (423)
Q Consensus 208 ~~~~el~~~~v~tv~m~s~~SS~~t~~~A~~LA~~iG~~h~~i~ 251 (423)
+.|...++-+.+.+..-+.+....|-++|...|+.+.--+
T Consensus 169 ----~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS 208 (288)
T 3oa3_A 169 ----LAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTS 208 (288)
T ss_dssp ----HHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC
T ss_pred ----HHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcC
Confidence 3344446677777655677788899999999999997665
No 61
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=22.61 E-value=77 Score=30.02 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=26.9
Q ss_pred CCHHHHHhcHHHHHHHHHHHhC--CCc-eEEeccCC
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSG--ASG-FLLPLSGG 163 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg--~~g-~~l~LSGG 163 (423)
...+++..+.|..|.+.++... .++ ++|+||||
T Consensus 7 ~~~~~la~~aA~~i~~~i~~~~~~~~~~~~lglsgG 42 (289)
T 1ne7_A 7 EHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTG 42 (289)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEcCC
Confidence 3567899999999999998743 245 89999999
No 62
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=21.90 E-value=79 Score=30.26 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCC--C-ceEEeccCCcc
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGA--S-GFLLPLSGGAD 165 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~--~-g~~l~LSGGiD 165 (423)
...+++....|..+.+.+++... + .++|+||||--
T Consensus 28 ~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGsT 65 (289)
T 3hn6_A 28 PTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSS 65 (289)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSST
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCcc
Confidence 56789999999999999997542 2 38999999943
No 63
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=20.34 E-value=88 Score=29.29 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCHHHHHhcHHHHHHHHHHHhCC--CceEEeccCCcc
Q 014523 131 SPEEEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGAD 165 (423)
Q Consensus 131 ~~~eei~~~~a~~L~Dylrrsg~--~g~~l~LSGGiD 165 (423)
...+++....+..|.+.+++.-. ..+.|+||||--
T Consensus 12 ~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgGst 48 (267)
T 3css_A 12 ENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGST 48 (267)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 46678999999999898887433 359999999943
Done!