RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014523
(423 letters)
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 229 bits (587), Expect = 3e-69
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 43/287 (14%)
Query: 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVNGDMIAQ 61
N S SH K R I + Y+Y+N G + GR+ +DG + G +I +
Sbjct: 188 NPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMIYDGEVLIAHKGKLIQR 247
Query: 62 GSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSL 121
+ S ++V ++ A + D+ ++
Sbjct: 248 NDRLSFKNVNLIYADIATDSAETPETVLTQD----------------------------- 278
Query: 122 SGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVV 181
E E L+DY+R+S + GF+L LSGGADSS+ A +V M + +
Sbjct: 279 -------DLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGL 331
Query: 182 KEIANGDEQVKADAIRIG---RYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKK 238
KE+ K++ + + F ++++ T + + NS ET AK
Sbjct: 332 KELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKT 391
Query: 239 LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYE 285
LA+ IG+ + S+D + + + + + + ++ D++ T +
Sbjct: 392 LAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDI----TLQ 434
Score = 116 bits (293), Expect = 2e-28
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 19/153 (12%)
Query: 233 RMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRP--RYKLDEVDMGMTYEELSVY 290
R K L + +A L RP + DE D+ M Y+ L+
Sbjct: 496 RWAEKNRNQHG----LHIVNKLAPTAEL---------RPSEYTQTDERDL-MPYDVLARI 541
Query: 291 GRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES 350
R PV ++ L T +E VK FF+ +SIN+ K L PS+H +
Sbjct: 542 ERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFHMDD 599
Query: 351 YSPEDNRFDLRQFLYNARWPYQFRKIDELVKEL 383
++ + + L + + + +D+
Sbjct: 600 FNIDPRSWYRFPILSSG-FAKELNDLDQEGHHH 631
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 205 bits (524), Expect = 6e-60
Identities = 51/304 (16%), Positives = 97/304 (31%), Gaps = 51/304 (16%)
Query: 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQ-QGCDGGRLYFDGCSCVVVNGDMIA 60
N SGS + + + R SA+ Y+Y+ +G L +DG + + NG ++A
Sbjct: 200 NLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTTDLAWDGQTMIWENGALLA 259
Query: 61 QGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSL-CQPFNLKM 119
+ +F + V VA VD + + R + +F + +++ + P +
Sbjct: 260 ESERFP-KGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRIDFALDPPAGDI 318
Query: 120 SLSGPLKITYHSP---------EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVA 170
L ++ P E L LR ++ +SGG DS+
Sbjct: 319 GLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHAL 378
Query: 171 AIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 230
+ + ++ + + +
Sbjct: 379 IVATHAMDREGRPRSD-------------------------------ILAFALPGFATGE 407
Query: 231 ETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVY 290
T+ A KLA +G ++ I L Y + E +T+E +V
Sbjct: 408 HTKNNAIKLARALGVTFSEIDIGDTARLMLHTIG------HPYSVGEKVYDVTFE--NVQ 459
Query: 291 GRLR 294
LR
Sbjct: 460 AGLR 463
Score = 101 bits (252), Expect = 4e-23
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 40/160 (25%)
Query: 248 LDVSIDTVVSAFLSLFQTLTGKRPRYK----LDEVDMG-MTYEELSVYGRLRKIFHCGPV 302
L +DT ++ L P + E +G ++ S++ LR F P
Sbjct: 535 LQSVLDTEITPEL---------IPTGEEELQSSEAKVGPFALQDFSLFQVLRYGF--RPS 583
Query: 303 SMFKNLCYRWG----------------ARLTPSEVAEK----VKHFFKYYSINRHKMTVL 342
+ + W + +E+ V+ F+ + R +
Sbjct: 584 KIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNG 643
Query: 343 TPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKE 382
H + SP R D R + + +ID V +
Sbjct: 644 PKVSHGGALSP---RGDWRAPSDMSARIW-LDQIDREVPK 679
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 76.6 bits (189), Expect = 3e-15
Identities = 60/266 (22%), Positives = 95/266 (35%), Gaps = 53/266 (19%)
Query: 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGR--LYFDGCSCVV-VNGDM 58
+ + S ++ K D R+ G Y G G+ L FDG S VV +G++
Sbjct: 186 SVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIG---GQDELVFDGDSIVVDRDGEV 242
Query: 59 IAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLK 118
+A+ QF VV +DL A + + IS +P
Sbjct: 243 VARAPQF---SEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISE--------EPLPAY 291
Query: 119 MSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQ 178
+ +EE+ L Y+ ++G L+ LSGG DS+ VAAI
Sbjct: 292 EAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA----- 346
Query: 179 LVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKK 238
DA+ A+ + Y V M S+ SS ++ A +
Sbjct: 347 --------------CDALG----------------AQNV-YGVSMPSKYSSDHSKGDAAE 375
Query: 239 LADEIGSWHLDVSIDTVVSAFLSLFQ 264
LA G VSI+ + A+++
Sbjct: 376 LARRTGLNFRTVSIEPMFDAYMASLG 401
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 1e-11
Identities = 56/398 (14%), Positives = 120/398 (30%), Gaps = 128/398 (32%)
Query: 52 VVVNGDMIAQGSQFSLRDVEVVVAQV--DLDAVAGFRGSIS--SFQEQASCKTKISSVAV 107
V+++G ++ G V V I + +C + + + +
Sbjct: 153 VLIDG-VLGSGKT-------WVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEM 201
Query: 108 QYSLC----QPFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 163
L + + S +K+ HS + E L L+ LL L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--------LRRLLKSKPYENCLLVLLNV 253
Query: 164 ADSSSVAAI-VGCMCQLVV----KEIANGDEQVKADAIRIGRYANGEFPTESRE-FAKRI 217
++ + A + C ++++ K++ + I + ++ P E + K
Sbjct: 254 QNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-- 309
Query: 218 FYTVFMGSENSS--QETR--------MRAKKLADEIGSW----HLDVS-IDTVVSAFLSL 262
++ +E + A+ + D + +W H++ + T++ + L+
Sbjct: 310 ----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN- 364
Query: 263 FQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVA 322
L+ + ++ LSV+ I P L W + S+V
Sbjct: 365 -----------VLEPAEYRKMFDRLSVFPPSAHI----PT---ILLSLIWFD-VIKSDVM 405
Query: 323 EKVKHFFKY-----------YSI------------NR---HKMTV-------------LT 343
V KY SI N H+ V L
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 344 P-----------SYHAESYSPEDNRFDLRQFLY-NARW 369
P +H ++ + R L + ++ + R+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRF 502
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 64.0 bits (156), Expect = 3e-11
Identities = 48/272 (17%), Positives = 88/272 (32%), Gaps = 80/272 (29%)
Query: 2 NASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNGDMIA 60
+GS + + K RI + G +Y N G + FDG S V+ G+++A
Sbjct: 191 VPNGSPYHMNKDAVRIDILRARIRETGLPMVYVNLVGGQDELV-FDGGSFVLDGAGELVA 249
Query: 61 QGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMS 120
+ Q F+E + + A+ ++
Sbjct: 250 KMPQ---------------------------FEEGNAIVEFDGARALPAAIAPAL----- 277
Query: 121 LSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLV 180
S E ++ + DY+ ++G G ++ LSGG DS+ V A+
Sbjct: 278 ----------SVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVD----- 322
Query: 181 VKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLA 240
A G E+V+A V M S ++ + A +A
Sbjct: 323 ----ALGAERVRA---------------------------VMMPSRYTAGISTTDAADMA 351
Query: 241 DEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPR 272
+G + +++I + AF +
Sbjct: 352 RRVGVRYDEIAIAPMFDAFRASLAAEFAGLAE 383
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 53.7 bits (130), Expect = 2e-08
Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 37/127 (29%)
Query: 142 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRY 201
++ + ++ S + G +L LSGG DS+ VA + A+
Sbjct: 15 DFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------------------KRAL----- 50
Query: 202 ANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLS 261
E + + + M ++ S++ A +L ++ + + I +++ AF+
Sbjct: 51 --KE----------NV-FALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIK 97
Query: 262 LFQTLTG 268
+ T
Sbjct: 98 QSENTTL 104
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 53.3 bits (129), Expect = 3e-08
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 38/129 (29%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 202
WL D A GF++ LSGG DS A+ +
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDS----AVAASLAVK----------------------- 51
Query: 203 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 262
+ + S+N+ + A +L + + H +SI AFL+
Sbjct: 52 -----------TGLPTTALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLAS 100
Query: 263 FQTLTGKRP 271
Q+ T +
Sbjct: 101 TQSFTNLQN 109
Score = 31.4 bits (72), Expect = 0.42
Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 25/72 (34%)
Query: 276 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 335
DE +MG+TY+E+ + +++ ++ E++ +++ +
Sbjct: 202 DEDEMGVTYQEIDDFLDGKQV---------------------SAKALERIN---FWHNRS 237
Query: 336 RHKMTV-LTPSY 346
HK + LTP++
Sbjct: 238 HHKRKLALTPNF 249
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 49.9 bits (120), Expect = 5e-07
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 37/128 (28%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 202
+L +++ G + LSGG DS+ V +
Sbjct: 15 FLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------------------QKV------- 48
Query: 203 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 262
F + + + M S S E + A L ++ + + SI + F S
Sbjct: 49 ----------FKENA-HALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSH 97
Query: 263 FQTLTGKR 270
F+ + R
Sbjct: 98 FKDASLTR 105
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 49.9 bits (120), Expect = 5e-07
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 36/133 (27%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--ANGDEQVKADAIRIGR 200
+L Y++++GA GF+L +SGG DS + G + QL V+ I GD Q A
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGDAQFIA------- 76
Query: 201 YANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIG-SWHLDVSIDTVVSAF 259
V + E A+ I I + VSAF
Sbjct: 77 --------------------VRLPHGTQQDED--DAQLALKFIKPDKSWKFDIKSTVSAF 114
Query: 260 LSLFQTLTGKRPR 272
+Q TG +
Sbjct: 115 SDQYQQETGDQLT 127
Score = 34.5 bits (80), Expect = 0.042
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 24/64 (37%)
Query: 276 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 335
DE ++G++Y+E+ Y +++ ++V+E ++ K YS+
Sbjct: 220 DETELGISYDEIDDYLEGKEV---------------------SAKVSEALE---KRYSMT 255
Query: 336 RHKM 339
HK
Sbjct: 256 EHKR 259
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 48.1 bits (115), Expect = 2e-06
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 30/139 (21%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 202
++ DYLR +G +L +SGG DS + G + QL V+ + +
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDS----STAGRLAQLAVERLRASGYDAR---------- 81
Query: 203 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSL 262
F + + E + LA L V + A L+
Sbjct: 82 ---------------FVAMRLPYGAQHDEADA-RRALAFVRADETLTVDVKPAADAMLAA 125
Query: 263 FQTLTGKRPRYKLDEVDMG 281
+ + +G
Sbjct: 126 LAAGGLAYLDHAQQDFVLG 144
Score = 31.2 bits (71), Expect = 0.51
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 24/64 (37%)
Query: 276 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 335
DE G+TYE++ + + + VAE V F Y
Sbjct: 232 DEHAYGITYEQIDDFLEGKPM---------------------DDAVAETVLRF---YDAT 267
Query: 336 RHKM 339
RHK
Sbjct: 268 RHKR 271
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 46.8 bits (112), Expect = 5e-06
Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 38/131 (29%)
Query: 142 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRY 201
+ +++R G +G ++ +SGG DS++VA + K A G E+V
Sbjct: 11 ERILEFIREKGNNGVVIGISGGVDSATVAYL-------ATK--ALGKEKVLG-------- 53
Query: 202 ANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLS 261
+ M + AK +A+++G + ++I +V +F+
Sbjct: 54 -------------------LIMPY--FENKDVEDAKLVAEKLGIGYKVINIKPIVDSFVE 92
Query: 262 LFQTLTGKRPR 272
+ ++
Sbjct: 93 NLELNLDRKGL 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 1e-05
Identities = 91/502 (18%), Positives = 149/502 (29%), Gaps = 172/502 (34%)
Query: 10 LRKLDYRIRAFISATHSRGGVYMYSNQ----QGCDGG--RLY--FDGCSCVVVNGDMIAQ 61
L K I+ +I+A + + + G +L F G Q
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG------------Q 163
Query: 62 GSQ---FS-LRDV----EVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQ 113
G+ F LRD+ V+V DL + S + E V ++ Q
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVG--DL-----IKFSAETLSELIRTTLDAEKV---FT--Q 211
Query: 114 PFNLKMSLSGPLKITYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSG----------- 162
N+ L P +P++ DYL S PL G
Sbjct: 212 GLNILEWLENPSN----TPDK-----------DYLLSIPIS---CPLIGVIQLAHYVVTA 253
Query: 163 -------GADSSSVAAIVGCMCQLVV-KEIANGDE-----QVKADAIR----IGRYANGE 205
G S + G LV IA D AI IG
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 206 FPTESREFAKRIFYTVFMGSENSSQE--TRM------RAKKLADEIGSW--HL----DVS 251
+P S ++ S +++ + M +++ D + HL V
Sbjct: 314 YPNTSLPP------SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 252 I-------DTVVSAF-LSLF---QTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKI---F 297
I + VVS SL+ TL + LD+ + + +L R + F
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 298 HCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES-----YS 352
H L P ++ + ++ S++A+ Y
Sbjct: 428 HS-H--------L-----LVP--ASDLINKDLVKNNV----------SFNAKDIQIPVYD 461
Query: 353 PEDNRFDLRQFLYNARWPYQFRKIDELVKE-LDGEKVPFSESSDH---------EKMGT- 401
D DLR + R +D +++ + E +++ H +G
Sbjct: 462 TFDGS-DLRVLSGSIS----ERIVDCIIRLPVKWETTTQFKAT-HILDFGPGGASGLGVL 515
Query: 402 TSD--GGGGMGVIAAGS--GNP 419
T G G+ VI AG+ NP
Sbjct: 516 THRNKDGTGVRVIVAGTLDINP 537
Score = 39.3 bits (91), Expect = 0.003
Identities = 40/226 (17%), Positives = 61/226 (26%), Gaps = 85/226 (37%)
Query: 61 QGSQF-----SLRDVEVVVAQV----D--LDAVAGFRGSISS------------FQEQAS 97
QGSQ L V D GF SI F +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF--SILDIVINNPVNLTIHFGGEKG 1681
Query: 98 CKTKISSVAVQYSLCQPFNLKM---------SLSGPLKITYHSPEE-------------- 134
+ + + A+ + LK + T+ S +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHST---SYTFRSEKGLLSATQFTQPALTL 1738
Query: 135 -EIAFGPGCWLWDYLRRSGASGFLLP---------------LSGGADS---SSVAAIV-- 173
E A ++ L+ G L+P L+ AD S+ +V
Sbjct: 1739 MEKA------AFEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 174 -GCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES-REFAKRI 217
G Q+ V G AI GR A F E+ + +R+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAAS-FSQEALQYVVERV 1833
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid,
center for structural genomics O infectious diseases,
alpha beta; 2.40A {Vibrio cholerae}
Length = 279
Score = 42.8 bits (101), Expect = 9e-05
Identities = 21/136 (15%), Positives = 35/136 (25%), Gaps = 30/136 (22%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYA 202
++ L + +L +SGG DS G + QL A
Sbjct: 30 FIKRKLTEARYKSLVLGISGGVDS----TTCGRLAQL----------------------A 63
Query: 203 NGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIG-SWHLDVSIDTVVSAFLS 261
E + + F V + E A+ I + + V+I V +
Sbjct: 64 VEELNQQHNTTEYQ-FIAVRLPYGEQKDED--EAQLALSFIRPTHSVSVNIKAGVDGLHA 120
Query: 262 LFQTLTGKRPRYKLDE 277
D
Sbjct: 121 ASHHALANTGLIPSDP 136
Score = 33.9 bits (78), Expect = 0.076
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 24/65 (36%)
Query: 276 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 335
DE + +TYE++ + + + P+EV++++ Y
Sbjct: 232 DEAALNLTYEQIDDFLEGKAV---------------------PAEVSQRLVAI---YHAT 267
Query: 336 RHKMT 340
+HK
Sbjct: 268 QHKRQ 272
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 39.9 bits (94), Expect = 8e-04
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 29 GVYM-YSNQQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFR 86
G+ + Y+N G +GG ++ G S VV G + + + ++V + +
Sbjct: 211 GITLAYANHCGPEGGLVFD-GGSVVVGPAGQPLGELG----VEPGLLVVDLPDQSQDAGS 265
Query: 87 GSISSFQ 93
S Q
Sbjct: 266 DSADYLQ 272
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 40.0 bits (94), Expect = 8e-04
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 35 NQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQ 93
N+ G DG +L++ G S V+ G + +VV + A+A R +
Sbjct: 202 NRVGVDGNQLHYAGDSAVIDFLGQPQVEIR----EQEQVVTTTISAAALAEHRARFPAML 257
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 38.5 bits (90), Expect = 0.002
Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 31/124 (25%)
Query: 143 WLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRY 201
+L YL+ +L +SGG DS + G +CQ+
Sbjct: 29 FLKSYLQTYPFIKSLVLGISGGQDS----TLAGKLCQM---------------------- 62
Query: 202 ANGEFPTESREFAKRIFYTVFM-GSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 260
A E E+ + + F V + + ++ A L V+I V A
Sbjct: 63 AINELRLETGNESLQ-FIAVRLPYGVQADEQDCQDAIAFIQPDRV--LTVNIKGAVLASE 119
Query: 261 SLFQ 264
+
Sbjct: 120 QALR 123
Score = 33.5 bits (77), Expect = 0.10
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 24/65 (36%)
Query: 276 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 335
DEV +G+TY+ + Y + + P +VA ++++ Y
Sbjct: 223 DEVALGVTYDNIDDYLEGKNV---------------------PQQVARTIENW---YLKT 258
Query: 336 RHKMT 340
HK
Sbjct: 259 EHKRR 263
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A
{Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A*
1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Length = 303
Score = 36.2 bits (84), Expect = 0.015
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 29 GVYM-YSNQQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFR 86
G + + + G + + G SC+V G+++A + + EV+ A VDLD R
Sbjct: 227 GAWSAAAGKAGMEENCMLL-GHSCIVAPTGEIVALTTT---LEDEVITAAVDLDRCRELR 282
Query: 87 GSISSF 92
I +F
Sbjct: 283 EHIFNF 288
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori
aliphatic amidase, hydrolase; 1.75A {Helicobacter
pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Length = 334
Score = 35.9 bits (83), Expect = 0.019
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 29 GVYM-YSNQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFR 86
+Y N G D Y+ G + +G + QG + E+V ++ R
Sbjct: 212 LMYTVSVNLAGYDNV-FYYFGEGQICNFDGTTLVQGHR---NPWEIVTGEIYPKMADNAR 267
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 29.6 bits (66), Expect = 0.63
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 375 KIDELVKELDGEKVPFSESSDHEKMGTTSDGGGGMGVIAAGSGNPKA 421
K+ + E V + + + G +G +
Sbjct: 38 KLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRW 84
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 29.1 bits (66), Expect = 3.0
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 24/59 (40%)
Query: 161 SGGADSSSVAAIVGCMCQLVVKE----IANGD-----------EQVKADAIRIGRYANG 204
+G A+ +++ +++ +GD E+ D + + R A G
Sbjct: 169 TGRAEWKALSV---------LEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 218
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 28.9 bits (65), Expect = 3.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 160 LSGGADSSSVAAI 172
LSGG DSS VAA
Sbjct: 248 LSGGIDSSGVAAC 260
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 28.9 bits (65), Expect = 4.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 160 LSGGADSSSVAAI 172
LSGG DSS V A+
Sbjct: 245 LSGGLDSSLVTAL 257
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN;
1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A*
3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A*
2h8x_A*
Length = 363
Score = 28.3 bits (64), Expect = 4.6
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 347 HAESYSPEDNRFDL----RQFLYNARWPYQFRKIDELVKELDGEKVP 389
AE+ + N+ DL R L + W Y K EL E +P
Sbjct: 309 LAEAAL-QANQLDLVSVGRAHLADPHWAYFAAK--ELGVEKASWTLP 352
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 28.2 bits (64), Expect = 5.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 157 LLPLSGGADSSSVAAIV 173
LL +SGG DSS++A ++
Sbjct: 213 LLAVSGGVDSSTLALLL 229
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
pyrococcus horikoshii OT3, structural genomics, NPPSFA;
1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 28.2 bits (64), Expect = 5.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 157 LLPLSGGADSSSVAAIV 173
++ LSGG DSS+ A +
Sbjct: 24 IIALSGGVDSSTAAVLA 40
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 28.2 bits (64), Expect = 5.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 157 LLPLSGGADSSSVAAIV 173
++ LSGG DS+ A +V
Sbjct: 234 IVGLSGGVDSAVTATLV 250
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 27.8 bits (63), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 157 LLPLSGGADSSSVAAIV 173
+L LSGG DSS A ++
Sbjct: 231 ILGLSGGVDSSVTAMLL 247
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 28.0 bits (63), Expect = 6.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 157 LLPLSGGADSSSVAAIV 173
L+ LSGG DS+ A++
Sbjct: 244 LVLLSGGVDSTVCTALL 260
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 27.6 bits (62), Expect = 8.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 157 LLPLSGGADSSSVAAIV 173
+ +SGG DS+ AA
Sbjct: 259 IAAMSGGIDSTVAAAYT 275
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich
protein, enterococcus FAE PSI-2, protein structure
initiative; 1.65A {Enterococcus faecalis} SCOP:
d.218.1.14
Length = 173
Score = 26.9 bits (59), Expect = 9.2
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 365 YNARWPYQFRKIDELVKELDGEKVPFSESSDHEKMGTTS 403
Y W QF + + +K++ E +H +G+TS
Sbjct: 11 YQPAWVEQFEEEAQALKQILKENC---LKVEH--IGSTS 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,744,598
Number of extensions: 416595
Number of successful extensions: 983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 54
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)