RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014523
(423 letters)
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 76.9 bits (188), Expect = 2e-16
Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 92/274 (33%)
Query: 131 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--ANGD 188
P++EI +L Y++++GA GF+L +SGG DS + G + QL V+ I GD
Sbjct: 17 DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGD 71
Query: 189 EQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM---------------------GSEN 227
Q A + G + + + +F K F
Sbjct: 72 AQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNK 131
Query: 228 SSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT--------------LTGKRPRY 273
+ + R R G L V + ++ F T LT ++ R
Sbjct: 132 GNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRT 191
Query: 274 KL--------------------------DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKN 307
L DE ++G++Y+E+ Y +++
Sbjct: 192 LLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV----------- 240
Query: 308 LCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 341
++V+E ++ K YS+ HK V
Sbjct: 241 ----------SAKVSEALE---KRYSMTEHKRQV 261
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 52.6 bits (125), Expect = 2e-08
Identities = 37/271 (13%), Positives = 71/271 (26%), Gaps = 54/271 (19%)
Query: 132 PEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKE--IANGD 188
EEEI +L YL+ +L +SGG DS + G +CQ+ + E + G+
Sbjct: 18 AEEEIRRSVD-FLKSYLQTYPFIKSLVLGISGGQDS----TLAGKLCQMAINELRLETGN 72
Query: 189 EQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHL 248
E ++ A+R+ + + +A L
Sbjct: 73 ESLQFIAVRL--------------------------PYGVQADEQDCQDAIAFIQPDRVL 106
Query: 249 DVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNL 308
V+I V A + + + + + G + +
Sbjct: 107 TVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAI 166
Query: 309 CYRWGARLTPSEVAEKVKHFFKY-------YSINRHKMTVLTPSYHAESYSPEDNRFD-- 359
+ + K + P+ A+ + D
Sbjct: 167 TGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPT--ADLEDDRPSLPDEV 224
Query: 360 --------LRQFLYNARWPYQ-FRKIDELVK 381
+ +L P Q R I+
Sbjct: 225 ALGVTYDNIDDYLEGKNVPQQVARTIENWYL 255
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 48.4 bits (114), Expect = 5e-07
Identities = 34/240 (14%), Positives = 60/240 (25%), Gaps = 49/240 (20%)
Query: 143 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGD-----------EQV 191
+L +++ G + LSGG DS+ V + CQ V KE A+ +
Sbjct: 13 FLEKEVQKRGFKKVVYGLSGGLDSAVVGVL----CQKVFKENAHALLMPSSVSMPENKTD 68
Query: 192 KADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVS 251
+ E+ + + + + R+R L D V
Sbjct: 69 ALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVI 128
Query: 252 IDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFH-CGPVSMFKNLCY 310
+ S + + TL G + E+ R I +L
Sbjct: 129 GTSNKSERMLGYGTLFGD--LACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFV 186
Query: 311 R-------------------------WGARLTPSEVA------EKVKHFFKYYSINRHKM 339
+ +A VK+ N K+
Sbjct: 187 GQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQLGYDEILVKNITSRIQKNAFKL 246
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 271
Score = 42.4 bits (98), Expect = 5e-05
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 14 DYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLRDVEV 72
+ + + + Q G + G S VV G ++AQ S V++
Sbjct: 193 AHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCS----ERVDM 248
Query: 73 VVAQVDLDAVAGFRGSISSFQ 93
A++DL V R F
Sbjct: 249 CFAEIDLSYVDTLREMQPVFS 269
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 39.4 bits (90), Expect = 5e-04
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 31 YMYSNQQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSI 89
M + + G S VV G ++A+ E++ A++D + + FR ++
Sbjct: 218 VMLCSPARNLQSSYHAYGHSIVVDPRGKIVAEAG----EGEEIIYAELDPEVIESFRQAV 273
Query: 90 SSFQ 93
+
Sbjct: 274 PLTK 277
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 30.0 bits (66), Expect = 0.53
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 160 LSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFY 219
LSGG DSS ++AI + + + + E+ +A ++ +A G + + A+ +
Sbjct: 41 LSGGLDSSIISAI---TKKYAARRVED-QERSEAWWPQLHSFAVGLPGSPDLKAAQEVAN 96
Query: 220 TVFM 223
+
Sbjct: 97 HLGT 100
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal
domains {Bacillus stearothermophilus [TaxId: 1422]}
Length = 265
Score = 28.3 bits (62), Expect = 1.8
Identities = 19/189 (10%), Positives = 50/189 (26%), Gaps = 20/189 (10%)
Query: 180 VVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKL 239
+++ + +++ + DA+R+ R F + + + + +T +
Sbjct: 1 IIRTVGEAEKRFREDALRMMRAV---------RFVSELGFAL-------APDTEQAIVQN 44
Query: 240 ADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGRLRKIFHC 299
A + +S++ + L R L E + L+ + ++
Sbjct: 45 APLLA----HISVERMTMEMEKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQLRLAAA 100
Query: 300 GPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFD 359
RW V E + N+ + +
Sbjct: 101 YRWPWLAAREERWALLCHALGVQESRPFLRAWKLPNKVVDEAGAILTALADIPRPEAWTN 160
Query: 360 LRQFLYNAR 368
+ F
Sbjct: 161 EQLFSAGLE 169
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.7 bits (60), Expect = 2.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 150 RSGASGFLLPLSGGADSSSVAAIVGCMC 177
+ G +L LSGG DSS A ++
Sbjct: 17 QVGDDKVILGLSGGVDSSVTAMLLHRAI 44
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 27.2 bits (59), Expect = 3.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 160 LSGGADSSSVAAI 172
LSGG DSS V A+
Sbjct: 40 LSGGLDSSLVTAL 52
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
{Enterococcus faecalis [TaxId: 1351]}
Length = 167
Score = 26.5 bits (58), Expect = 4.1
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 365 YNARWPYQFRKIDELVKELDGEKVPFSESSDHEKMGTTS 403
Y W QF + + +K++ E E H +G+TS
Sbjct: 5 YQPAWVEQFEEEAQALKQILKENCLKVE---H--IGSTS 38
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 26.9 bits (58), Expect = 4.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 160 LSGGADSSSVAAIV 173
LSGG DSS VAA
Sbjct: 39 LSGGIDSSGVAACA 52
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 381
Score = 26.1 bits (57), Expect = 9.8
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 313 GARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQ 372
++ VA + + K L + +D RF N W Q
Sbjct: 273 PRTISDQNVAARSDLLVDQW----KKKAELYRTNVLLIPLGDDFRFK-----QNTEWDVQ 323
Query: 373 FRKIDELVKELDGEKVPFSESSDHEKMGTTSD 404
+ L + ++ + + + GT +
Sbjct: 324 RVNYERLFEHIN----SQAHFNVQAQFGTLQE 351
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,636,846
Number of extensions: 78479
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 14
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)