BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014524
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
L+ ++++G R+SD T++ N +LV + LS C G + + L+S C L ++L+ C
Sbjct: 82 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 140
Query: 363 HSITDDAIS-AIADSCRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTD 413
T+ + A+A + L + +K L L C L +DL+D
Sbjct: 141 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 193
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 347 LVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406
++S C L+ + L ++D ++ +A + LV L + C+ +E L L S C RL
Sbjct: 75 ILSQCSKLQNLSLEGLR-LSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRL 132
Query: 407 EEIDLTDCNGVNDK 420
+E++L+ C +K
Sbjct: 133 DELNLSWCFDFTEK 146
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 209 LKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRC-KFVSSTGL 267
L+L++ ++A + L L + GC + L+ L S C L + +S C F
Sbjct: 90 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 149
Query: 268 ISVIRGHSGLLQLD-AGHCFSELSTTLLHHMRDLKNLEAITM-DGARISDSCFQTISFNC 325
++V + QL+ +G+ + + L +R NL + + D + + CFQ F
Sbjct: 150 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQL 208
Query: 326 KSLVEIGLSKCLGVTNTGITQL 347
L + LS+C + + +L
Sbjct: 209 NYLQHLSLSRCYDIIPETLLEL 230
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
L+ ++++G R+SD T++ N +LV + LS C G + + L+S C L ++L+ C
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178
Query: 363 HSITDDAIS-AIADSCRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTD 413
T+ + A+A + L + +K L L C L +DL+D
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 347 LVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406
++S C L+ + L ++D ++ +A + LV L + C+ +E L L S C RL
Sbjct: 113 ILSQCSKLQNLSLEGLR-LSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRL 170
Query: 407 EEIDLTDCNGVNDK 420
+E++L+ C +K
Sbjct: 171 DELNLSWCFDFTEK 184
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
LE I + ++D C + I+ + K+ + LS C G + G+ + + C NLK +DL
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR-- 164
Query: 363 HSITDDA----ISAIADSCRGLVCLKIESC--NMITEKGLYQLGSFCLRLEEIDLT 412
S DD +S D+ LV L I SC + ++ L +L + C L+ + L
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNI-SCLASEVSFSALERLVTRCPNLKSLKLN 219
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 365 ITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCN 415
+TDD + IA S + L + SC + GL + + C L+E+DL + +
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 85/420 (20%), Positives = 162/420 (38%), Gaps = 71/420 (16%)
Query: 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFL--FILLDKYPYI 67
E++L V I + D + LVCK + ++ R + + + ++ ++P +
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68
Query: 68 KTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESV 127
++++L P D +L+ G Y +E ++ + LE +
Sbjct: 69 RSVELKGKPHFADF------------------NLVPDGWGGYVYPWIEAMSSSYTWLEEI 110
Query: 128 DLSYCCGFGD-REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEI 186
L D E A SF + K + L C + GLA IA C NL+ L L+ ++
Sbjct: 111 RLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DV 168
Query: 187 SDLGIXXXXXXXXXXXXXXVSYLKLTNDSFCSIATLAKLESLVMVGCPC--VDDTGLRFL 244
D+ +L D++ S+ +L + C V + L L
Sbjct: 169 DDVS---------------GHWLSHFPDTYTSLVSLN-------ISCLASEVSFSALERL 206
Query: 245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM------- 297
+ CP LK++ ++R V L ++++ L +L G +E+ + +
Sbjct: 207 VTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264
Query: 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357
++L+ L D + + C L + LS V + + +L+ C L+
Sbjct: 265 KELRCLSGF-WDAV---PAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQR- 318
Query: 358 DLTCCHSITDDAISAIADSCRGLVCLKI--------ESCNMITEKGLYQLGSFCLRLEEI 409
L I D + +A +C+ L L++ E +TE+GL + C +LE +
Sbjct: 319 -LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 29/189 (15%)
Query: 12 EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR--TTLRVLRVEFLFILLDKYPYIKT 69
+D++ +V I D D + LVC+ + ++DS TR T+ + L ++P +++
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 70 LDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDL 129
L L PR + + + + +W + + S LR R ++ +DL
Sbjct: 78 LKLKGKPR------AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDL 129
Query: 130 SYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSL--------- 180
DR A A A L+ +KLDKC T GL I C ++ L +
Sbjct: 130 -------DRLAKAR--ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180
Query: 181 -KWCMEISD 188
KW E++
Sbjct: 181 GKWLHELAQ 189
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 251 LKTIFVSRCKFVSSTGLISVI---RGHSGLLQLDAGHCFSELSTTLLH----HMRDLKNL 303
L+T+ + +C ++ GL+S++ R LL ++ FSE LH H L+ L
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVL 197
Query: 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH 363
+ A+IS +TI+ NC+SLV + V + I +LV ++ C
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSV------KVGDFEILELVGFFKAAANLEEFCGG 251
Query: 364 SITDD 368
S+ +D
Sbjct: 252 SLNED 256
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 337 LGVTNTGITQLVSGCVNLKTIDLT-CCHSITDDAISAIADSCRGLVCLKIESCNM-ITEK 394
+G ++ G+ + GC NL+ +++ CC S + AI+A L L ++ +T +
Sbjct: 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFS--ERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530
Query: 395 GLYQLGSFCLRLEEIDLTDCNGVNDKGE 422
L Q+ +E I VN +GE
Sbjct: 531 DLMQMARPYWNIELIPSRRVPEVNQQGE 558
>pdb|3CV7|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Ternary
Complex
pdb|3H4G|A Chain A, Structure Of Aldehyde Reductase Holoenzyme In Complex With
Potent Aldose Reductase Inhibitor Fidarestat:
Implications For Inhibitor Binding And Selectivity
pdb|3FX4|A Chain A, Porcine Aldehyde Reductase In Ternary Complex With
Inhibitor
Length = 325
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1HQT|A Chain A, The Crystal Structure Of An Aldehyde Reductase Y50f
Mutant- Nadp Complex And Its Implications For Substrate
Binding
Length = 326
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 92 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 150
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 151 LVAKGLVRALGL 162
>pdb|1AE4|A Chain A, Aldehyde Reductase Complexed With Cofactor And Inhibitor,
Alpha Carbon Atoms Only
Length = 325
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1CWN|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Holoenzyme
Length = 324
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 148
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 149 LVAKGLVRALGL 160
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351
+D +L +D +I +DSC +I F+ + G
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDH----------------------MEGL 84
Query: 352 VNLKTIDLTCCHSITD---DAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408
++ I L CH I D + +S + + + ++ ++I SC +T+KG+ L F L+
Sbjct: 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY 143
Query: 409 IDLTDCNGVNDK 420
+ L+D GV +K
Sbjct: 144 LFLSDLPGVKEK 155
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351
+D +L +D +I +DSC +I F+ + G
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDH----------------------MEGL 84
Query: 352 VNLKTIDLTCCHSITD---DAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408
++ I L CH I D + +S + + + ++ ++I SC +T+KG+ L F L+
Sbjct: 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY 143
Query: 409 IDLTDCNGVNDK 420
+ L+D GV +K
Sbjct: 144 LFLSDLPGVKEK 155
>pdb|4GAC|A Chain A, High Resolution Structure Of Mouse Aldehyde Reductase
(akr1a4) In Its Apo-form
pdb|4GAC|B Chain B, High Resolution Structure Of Mouse Aldehyde Reductase
(akr1a4) In Its Apo-form
Length = 324
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGTV + + +W ++L+
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTVRYDSTHYKETW-KALEV 148
Query: 101 LI 102
L+
Sbjct: 149 LV 150
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 105 RSTGLRYRGLEMLARACPLLESVDLSYCC---GFGDREAAALSFASGLKEVKLDKCLNVT 161
R G+ + R C L+ V L YCC GF L SGL E+KL N
Sbjct: 308 RKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQM 367
Query: 162 D 162
D
Sbjct: 368 D 368
>pdb|2ALR|A Chain A, Aldehyde Reductase
Length = 324
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTICYDSTHYKETW-KALEA 148
Query: 101 LI 102
L+
Sbjct: 149 LV 150
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 24 DELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKY-PYIKTLD 71
D D T R FS V R RVL+ + F+L+D Y P LD
Sbjct: 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLD 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,494,231
Number of Sequences: 62578
Number of extensions: 365441
Number of successful extensions: 1104
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 39
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)