Query 014524
Match_columns 423
No_of_seqs 352 out of 2186
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 05:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1E-36 2.3E-41 253.3 14.0 380 8-413 73-461 (483)
2 KOG4341 F-box protein containi 100.0 1.4E-30 3.1E-35 217.0 10.7 327 94-422 108-444 (483)
3 KOG2120 SCF ubiquitin ligase, 100.0 1.5E-27 3.2E-32 190.5 13.4 269 6-311 97-373 (419)
4 PLN00113 leucine-rich repeat r 99.8 2.6E-20 5.6E-25 187.9 15.5 331 60-418 88-441 (968)
5 PLN00113 leucine-rich repeat r 99.8 3.6E-20 7.7E-25 186.9 14.5 329 58-415 111-463 (968)
6 KOG4194 Membrane glycoprotein 99.8 9.5E-21 2.1E-25 165.3 0.1 324 66-417 79-428 (873)
7 KOG4194 Membrane glycoprotein 99.8 7.5E-21 1.6E-25 166.0 -2.0 325 67-419 54-406 (873)
8 cd00116 LRR_RI Leucine-rich re 99.8 7.3E-17 1.6E-21 142.3 21.5 278 126-413 2-316 (319)
9 KOG2120 SCF ubiquitin ligase, 99.8 2.9E-18 6.2E-23 137.8 10.6 203 174-408 186-391 (419)
10 cd00116 LRR_RI Leucine-rich re 99.7 5E-16 1.1E-20 137.0 22.3 279 100-389 2-318 (319)
11 KOG1947 Leucine rich repeat pr 99.7 7.1E-17 1.5E-21 151.1 11.2 378 6-400 44-449 (482)
12 KOG1947 Leucine rich repeat pr 99.6 2.4E-15 5.1E-20 140.9 14.2 288 95-386 160-460 (482)
13 PLN03210 Resistant to P. syrin 99.5 3.2E-14 6.9E-19 144.4 12.0 131 274-419 777-908 (1153)
14 KOG1909 Ran GTPase-activating 99.5 1.4E-13 3.1E-18 113.6 12.3 201 197-404 90-325 (382)
15 PLN03210 Resistant to P. syrin 99.5 2E-13 4.3E-18 138.7 10.9 108 300-419 777-884 (1153)
16 KOG1909 Ran GTPase-activating 99.4 5.6E-12 1.2E-16 104.3 11.8 244 165-417 22-310 (382)
17 KOG0444 Cytoskeletal regulator 99.4 9.9E-15 2.1E-19 129.6 -5.7 298 94-415 76-373 (1255)
18 KOG3207 Beta-tubulin folding c 99.3 8.7E-13 1.9E-17 112.2 0.5 37 172-209 196-232 (505)
19 KOG0444 Cytoskeletal regulator 99.3 2.9E-13 6.4E-18 120.4 -2.7 301 61-391 74-375 (1255)
20 KOG3207 Beta-tubulin folding c 99.3 2.6E-12 5.7E-17 109.3 3.0 63 146-209 120-182 (505)
21 KOG0618 Serine/threonine phosp 99.1 1.6E-11 3.4E-16 114.2 -0.5 128 250-389 360-487 (1081)
22 KOG3665 ZYG-1-like serine/thre 99.0 1.9E-09 4E-14 102.2 10.5 206 173-388 60-285 (699)
23 PF12937 F-box-like: F-box-lik 98.9 2.7E-10 5.8E-15 67.9 1.4 38 7-45 1-38 (47)
24 KOG0618 Serine/threonine phosp 98.9 1.3E-10 2.7E-15 108.4 -0.0 248 93-364 216-488 (1081)
25 KOG3665 ZYG-1-like serine/thre 98.9 4E-09 8.7E-14 100.0 9.8 213 140-362 53-285 (699)
26 COG5238 RNA1 Ran GTPase-activa 98.8 1.5E-07 3.2E-12 76.0 13.6 70 326-398 185-261 (388)
27 KOG4237 Extracellular matrix p 98.8 1.1E-09 2.3E-14 92.6 -0.6 85 322-412 270-354 (498)
28 PRK15387 E3 ubiquitin-protein 98.7 4E-08 8.6E-13 93.9 7.6 83 302-399 383-465 (788)
29 PRK15387 E3 ubiquitin-protein 98.7 1.5E-08 3.1E-13 96.8 4.1 237 122-418 222-458 (788)
30 KOG4237 Extracellular matrix p 98.7 8.4E-09 1.8E-13 87.3 2.2 280 94-389 65-357 (498)
31 COG5238 RNA1 Ran GTPase-activa 98.7 7E-07 1.5E-11 72.2 12.8 193 196-393 89-317 (388)
32 KOG2982 Uncharacterized conser 98.6 1.5E-07 3.2E-12 77.0 6.7 207 149-363 47-260 (418)
33 PF00646 F-box: F-box domain; 98.6 1.7E-08 3.8E-13 60.5 1.0 39 6-45 2-40 (48)
34 KOG3864 Uncharacterized conser 98.5 1.3E-07 2.8E-12 72.9 5.0 106 303-410 103-210 (221)
35 PF14580 LRR_9: Leucine-rich r 98.5 2.6E-08 5.7E-13 77.3 0.3 37 274-314 41-77 (175)
36 KOG3864 Uncharacterized conser 98.5 1E-07 2.2E-12 73.5 3.1 85 327-414 102-186 (221)
37 smart00256 FBOX A Receptor for 98.5 1.7E-07 3.7E-12 54.1 3.2 35 10-45 1-35 (41)
38 KOG2982 Uncharacterized conser 98.5 8.2E-08 1.8E-12 78.4 2.4 209 200-419 46-263 (418)
39 PF14580 LRR_9: Leucine-rich r 98.3 8.9E-07 1.9E-11 68.9 4.0 81 122-211 19-100 (175)
40 KOG4658 Apoptotic ATPase [Sign 98.3 4.3E-07 9.4E-12 88.8 2.6 108 120-232 543-651 (889)
41 PRK15370 E3 ubiquitin-protein 98.2 9.1E-06 2E-10 78.4 10.4 87 301-398 346-434 (754)
42 KOG1259 Nischarin, modulator o 98.2 1.4E-06 3E-11 71.6 3.5 126 273-413 282-408 (490)
43 KOG4658 Apoptotic ATPase [Sign 98.1 1.3E-06 2.8E-11 85.6 1.8 107 197-308 569-675 (889)
44 PRK15370 E3 ubiquitin-protein 98.1 1.7E-05 3.8E-10 76.5 9.3 250 122-419 178-429 (754)
45 KOG1859 Leucine-rich repeat pr 97.9 1.6E-06 3.6E-11 79.7 -1.0 35 299-336 185-219 (1096)
46 KOG1259 Nischarin, modulator o 97.8 6.6E-06 1.4E-10 67.7 1.5 63 92-156 178-246 (490)
47 KOG0472 Leucine-rich repeat pr 97.8 7.1E-06 1.5E-10 70.3 1.6 107 247-363 433-539 (565)
48 KOG0472 Leucine-rich repeat pr 97.8 8.5E-06 1.8E-10 69.8 1.7 40 295-336 429-468 (565)
49 KOG1859 Leucine-rich repeat pr 97.5 3.1E-05 6.7E-10 71.7 0.3 42 117-158 79-120 (1096)
50 PF13855 LRR_8: Leucine rich r 97.4 2.8E-05 6E-10 49.3 -0.4 16 297-312 21-36 (61)
51 PF13855 LRR_8: Leucine rich r 97.3 3.9E-05 8.5E-10 48.6 -0.3 36 197-232 23-58 (61)
52 smart00367 LRR_CC Leucine-rich 97.2 0.00041 8.8E-09 34.9 2.8 22 378-399 2-23 (26)
53 KOG4308 LRR-containing protein 97.2 5.9E-05 1.3E-09 69.0 -1.1 189 222-416 114-330 (478)
54 smart00367 LRR_CC Leucine-rich 97.1 0.00071 1.5E-08 34.0 3.0 24 351-374 1-24 (26)
55 PLN03150 hypothetical protein; 97.1 0.00088 1.9E-08 64.4 6.0 40 296-336 437-476 (623)
56 KOG2123 Uncharacterized conser 97.0 0.00025 5.5E-09 58.0 0.9 79 276-362 20-98 (388)
57 KOG0617 Ras suppressor protein 96.9 9E-06 1.9E-10 61.2 -7.0 18 295-312 144-161 (264)
58 PRK15386 type III secretion pr 96.9 0.0012 2.5E-08 58.6 4.5 134 196-361 49-186 (426)
59 KOG4308 LRR-containing protein 96.9 0.0006 1.3E-08 62.6 2.7 112 249-364 204-330 (478)
60 PLN03150 hypothetical protein; 96.7 0.0039 8.4E-08 60.1 6.6 88 272-363 439-526 (623)
61 KOG2739 Leucine-rich acidic nu 96.7 0.00075 1.6E-08 54.9 1.3 86 172-257 64-151 (260)
62 KOG2739 Leucine-rich acidic nu 96.7 0.00022 4.8E-09 57.9 -1.8 89 143-233 61-153 (260)
63 KOG0617 Ras suppressor protein 96.6 7.7E-06 1.7E-10 61.5 -9.5 106 198-312 32-138 (264)
64 KOG2123 Uncharacterized conser 96.6 0.0011 2.3E-08 54.5 1.8 115 249-374 19-136 (388)
65 PF12799 LRR_4: Leucine Rich r 96.6 0.0038 8.3E-08 36.1 3.5 38 378-419 1-38 (44)
66 PLN03215 ascorbic acid mannose 96.5 0.0019 4.2E-08 56.5 3.1 40 5-44 2-41 (373)
67 KOG2997 F-box protein FBX9 [Ge 96.3 0.0029 6.2E-08 52.8 2.7 40 5-44 105-148 (366)
68 PF12799 LRR_4: Leucine Rich r 96.1 0.008 1.7E-07 34.7 2.9 34 302-337 2-35 (44)
69 KOG1644 U2-associated snRNP A' 96.0 0.0034 7.4E-08 49.1 1.5 107 275-388 42-150 (233)
70 KOG0281 Beta-TrCP (transducin 95.7 0.0074 1.6E-07 50.9 2.3 41 3-44 71-115 (499)
71 COG4886 Leucine-rich repeat (L 95.7 0.014 3.1E-07 53.1 4.5 33 199-232 116-149 (394)
72 KOG1644 U2-associated snRNP A' 95.6 0.0064 1.4E-07 47.7 1.7 107 249-363 42-151 (233)
73 PF13516 LRR_6: Leucine Rich r 94.9 0.026 5.6E-07 27.6 2.1 22 378-400 2-23 (24)
74 PF13516 LRR_6: Leucine Rich r 94.0 0.05 1.1E-06 26.5 2.0 21 301-321 2-22 (24)
75 PRK15386 type III secretion pr 94.0 0.15 3.2E-06 45.7 6.1 72 271-361 48-121 (426)
76 PF13013 F-box-like_2: F-box-l 93.8 0.095 2.1E-06 37.1 3.6 30 6-36 21-50 (109)
77 COG4886 Leucine-rich repeat (L 93.7 0.056 1.2E-06 49.3 3.2 174 144-336 113-287 (394)
78 KOG4579 Leucine-rich repeat (L 93.3 0.03 6.4E-07 41.1 0.5 59 248-312 76-134 (177)
79 KOG0531 Protein phosphatase 1, 92.9 0.019 4E-07 52.7 -1.3 103 274-389 94-197 (414)
80 KOG4579 Leucine-rich repeat (L 92.6 0.019 4.1E-07 42.1 -1.3 33 301-335 77-109 (177)
81 KOG0531 Protein phosphatase 1, 92.0 0.038 8.3E-07 50.6 -0.5 126 198-337 71-197 (414)
82 KOG3763 mRNA export factor TAP 91.5 0.4 8.7E-06 44.0 5.3 38 299-336 216-254 (585)
83 smart00368 LRR_RI Leucine rich 91.0 0.34 7.3E-06 24.7 2.6 23 301-323 2-24 (28)
84 smart00368 LRR_RI Leucine rich 90.7 0.43 9.4E-06 24.3 2.9 21 353-374 3-23 (28)
85 KOG0274 Cdc4 and related F-box 88.1 0.15 3.3E-06 47.9 0.1 44 4-48 105-148 (537)
86 PF13504 LRR_7: Leucine rich r 85.4 0.64 1.4E-05 20.4 1.3 9 380-388 3-11 (17)
87 KOG3763 mRNA export factor TAP 84.3 1.9 4.1E-05 39.9 4.9 87 269-358 212-307 (585)
88 KOG3926 F-box proteins [Amino 76.3 6.1 0.00013 32.9 4.8 40 4-43 199-238 (332)
89 PF13306 LRR_5: Leucine rich r 70.8 1.4 3E-05 32.5 0.1 8 199-206 12-19 (129)
90 PF07723 LRR_2: Leucine Rich R 69.2 4.9 0.00011 20.0 1.8 7 329-335 3-9 (26)
91 PF00560 LRR_1: Leucine Rich R 64.5 3.9 8.4E-05 19.2 0.9 9 380-388 2-10 (22)
92 KOG3735 Tropomodulin and leiom 61.1 23 0.0005 30.8 5.4 25 376-401 253-277 (353)
93 smart00370 LRR Leucine-rich re 55.9 12 0.00026 18.3 1.8 15 404-419 2-16 (26)
94 smart00369 LRR_TYP Leucine-ric 55.9 12 0.00026 18.3 1.8 15 404-419 2-16 (26)
95 smart00365 LRR_SD22 Leucine-ri 47.0 20 0.00043 17.9 1.7 15 404-419 2-16 (26)
96 KOG3735 Tropomodulin and leiom 45.0 55 0.0012 28.7 5.1 35 240-274 189-223 (353)
97 KOG0532 Leucine-rich repeat (L 41.4 7 0.00015 36.7 -0.6 13 198-210 120-132 (722)
98 KOG0532 Leucine-rich repeat (L 34.4 11 0.00024 35.5 -0.5 125 277-414 145-270 (722)
99 KOG2502 Tub family proteins [G 33.8 27 0.00058 30.6 1.7 41 5-45 43-90 (355)
100 smart00364 LRR_BAC Leucine-ric 24.8 51 0.0011 16.5 1.1 13 405-418 3-15 (26)
101 PF11985 DUF3486: Protein of u 24.6 54 0.0012 26.0 1.9 23 1-23 1-23 (180)
102 PF12586 DUF3760: Protein of u 23.2 46 0.001 19.4 0.9 29 12-41 6-34 (46)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1e-36 Score=253.34 Aligned_cols=380 Identities=23% Similarity=0.387 Sum_probs=296.6
Q ss_pred ccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccccccchHHHHHHHhhcCCCcceEeecCCC-CCChhHHHHH
Q 014524 8 DVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCP-RVNDGTVSFL 86 (423)
Q Consensus 8 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~l 86 (423)
-.||+|++..||++|+ ...+.+++++|+.|...+....-+ +.+|+.... .+....++.+
T Consensus 73 ~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~-------------------q~idL~t~~rDv~g~VV~~~ 132 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCW-------------------QHIDLFTFQRDVDGGVVENM 132 (483)
T ss_pred ccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccc-------------------eeeehhcchhcCCCcceehH
Confidence 4699999999999999 999999999999999876443222 222322111 1122223333
Q ss_pred hhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhc-CCCCcEEecCCCCCCChHHH
Q 014524 87 LSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF-ASGLKEVKLDKCLNVTDVGL 165 (423)
Q Consensus 87 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~ 165 (423)
.......|+.|.+.++....+..+..+...||++++|.+.+|..+++.....+++ +++|++|++..|..+++..+
T Consensus 133 ----~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 133 ----ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred ----hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 1233467788888888777777777777788888888888888888877777766 78888888888888888888
Q ss_pred HHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCc-ccChhHHHHhhc-cCCccEEEecCCCCCCchhHHH
Q 014524 166 AKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTNDSFCSIAT-LAKLESLVMVGCPCVDDTGLRF 243 (423)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~ 243 (423)
..+.++|++|+++++++|+.+...++..+...+..++.+...+| ....+.+..... ++.+..+++..|..+++..+..
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 88888888888888888888888888888878888888877777 555555555554 6777777777888888888877
Q ss_pred HHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhc-CCcccEEEccCcc-CChhhHHHH
Q 014524 244 LESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD-LKNLEAITMDGAR-ISDSCFQTI 321 (423)
Q Consensus 244 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~~l 321 (423)
+..++..|+.|..++|..+++..+.++..++++|+.|.+..|.. +++..+..+++ ++.|+.+++..+. +.+..+..+
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 88878888888888888888888888888888888888888887 78877777764 7788888888875 555568888
Q ss_pred HhcCCCccEEeeccCCCCChHHHHHHHh---cCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHH
Q 014524 322 SFNCKSLVEIGLSKCLGVTNTGITQLVS---GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQ 398 (423)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~ 398 (423)
+.+|+.|+.+.++.|..++|+++..+.. ....|+.+.+.+|+.+++..++.+. .|++|+.+++.+|..++..++..
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHH
Confidence 8899999999999999899988766643 4578889999999999988888777 59999999999999999999999
Q ss_pred HHhcCCCCCEEeccC
Q 014524 399 LGSFCLRLEEIDLTD 413 (423)
Q Consensus 399 l~~~~~~L~~L~l~~ 413 (423)
+...+|++++..+-.
T Consensus 447 ~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 447 FATHLPNIKVHAYFA 461 (483)
T ss_pred HHhhCccceehhhcc
Confidence 998899888766543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=216.96 Aligned_cols=327 Identities=24% Similarity=0.458 Sum_probs=288.2
Q ss_pred cCCCccEEEeccCC-CCchhHHHHHHHhC-CCccEEEccCcCCCChHHHHHhhc-CCCCcEEecCCCCCCChHHHHHHHH
Q 014524 94 WTRSLKSLILSRST-GLRYRGLEMLARAC-PLLESVDLSYCCGFGDREAAALSF-ASGLKEVKLDKCLNVTDVGLAKIAV 170 (423)
Q Consensus 94 ~~~~L~~L~l~~~~-~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~ 170 (423)
...+.++.++.... .+....+..+.+.| ..|++|.+.++..+.+.....+.+ +|++++|.+.+|..+++..+..+.+
T Consensus 108 D~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~ 187 (483)
T KOG4341|consen 108 DGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR 187 (483)
T ss_pred ccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH
Confidence 44556666665332 23344555666555 479999999999888888776665 9999999999999999999999999
Q ss_pred hCccccccccccccccchhhHHHHHhcCCCCcEEeccCc-ccChhHHHHhhc-cCCccEEEecCCCCCCchhHHHHHhcC
Q 014524 171 RCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTNDSFCSIAT-LAKLESLVMVGCPCVDDTGLRFLESGC 248 (423)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~ 248 (423)
.|++|++|.+..|..+++..++.+.+.|++|+++.++.+ .+...++..+.. +..++.+...||.......+..+..++
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 999999999999999999999999999999999999999 777777777664 888999988999999999898888889
Q ss_pred CCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhh-cCCcccEEEccCcc-CChhhHHHHHhcCC
Q 014524 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR-DLKNLEAITMDGAR-ISDSCFQTISFNCK 326 (423)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~l~~~~~ 326 (423)
+.+..+++..|..+++.++..+...+..|+.|..++|.. +++....++. ++++|+.|.+.+|+ +++.++..++.+++
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 999999999999999999999999999999999999998 8888888876 58999999999995 99999999999999
Q ss_pred CccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHh---hCCCccEEEeccCCCCCHHHHHHHHhcC
Q 014524 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESCNMITEKGLYQLGSFC 403 (423)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 403 (423)
.|+.+++..|..+++..+..+..+||.|+.+.++.|..++|+++..+.. ....|+.+.++.|+.+++..++.+. .|
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c 425 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-IC 425 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hC
Confidence 9999999999988888899999999999999999999999998887765 3578999999999989988888887 99
Q ss_pred CCCCEEeccCCCCCCCCCC
Q 014524 404 LRLEEIDLTDCNGVNDKGE 422 (423)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~ 422 (423)
++|+.+++.+|..++.+++
T Consensus 426 ~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAI 444 (483)
T ss_pred cccceeeeechhhhhhhhh
Confidence 9999999999999988775
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=190.49 Aligned_cols=269 Identities=19% Similarity=0.297 Sum_probs=169.4
Q ss_pred ccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhcccc------ccchHHHHHHHhhcCCCcceEeecCCCCCC
Q 014524 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTL------RVLRVEFLFILLDKYPYIKTLDLSVCPRVN 79 (423)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 79 (423)
.|+.|||||+..||+.|+ .+++.+++.|||||+++....+.+. +.+.+..+.++.++ .+..+.+.+ ....
T Consensus 97 ~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar-~~~~ 172 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLAR-SFMD 172 (419)
T ss_pred CcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcch-hhhc
Confidence 489999999999999999 9999999999999999976665432 23334445555443 233344333 1122
Q ss_pred hh-HHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCC
Q 014524 80 DG-TVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCL 158 (423)
Q Consensus 80 ~~-~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 158 (423)
+. ..+.. ...-..|++|++++. .++...+..+...|.+|+.|++.+ ..+.|.....+++-.+|+.|+++.|.
T Consensus 173 ~prlae~~-----~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 173 QPRLAEHF-----SPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred Cchhhhhh-----hhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeecccccc
Confidence 22 12222 223456888888876 578888888888899999999988 56788877888888899999999988
Q ss_pred CCChHHHHHHHHhCccccccccccccccchhhHHHHH-hcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCC
Q 014524 159 NVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLC-KKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVD 237 (423)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (423)
+++..++..+.++|+.|.+|++++|...++. +..+. .--++|+.|.++++. ..+.
T Consensus 246 G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~r-----------------------rnl~ 301 (419)
T KOG2120|consen 246 GFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYR-----------------------RNLQ 301 (419)
T ss_pred ccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhH-----------------------hhhh
Confidence 8998888888888999999999988544433 33332 223455666655541 0122
Q ss_pred chhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCc
Q 014524 238 DTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGA 311 (423)
Q Consensus 238 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 311 (423)
...+..+...||+|.+|+++.+..+++..+..+.+ ++.|++|.++.|.. +..+.+-.+...|.|.+|++.++
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~-i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYD-IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcC-CChHHeeeeccCcceEEEEeccc
Confidence 22344444455555555555554444433333332 45555555555544 33333333334444444444333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=2.6e-20 Score=187.87 Aligned_cols=331 Identities=19% Similarity=0.189 Sum_probs=163.3
Q ss_pred HhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHH
Q 014524 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDRE 139 (423)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 139 (423)
.+..+++|+.|+++++. +.......+ ...+.+|++|+++++. +... ++ ...+++|++|+++++ .+....
T Consensus 88 ~~~~l~~L~~L~Ls~n~-~~~~ip~~~-----~~~l~~L~~L~Ls~n~-l~~~-~p--~~~l~~L~~L~Ls~n-~~~~~~ 156 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQ-LSGPIPDDI-----FTTSSSLRYLNLSNNN-FTGS-IP--RGSIPNLETLDLSNN-MLSGEI 156 (968)
T ss_pred HHhCCCCCCEEECCCCc-cCCcCChHH-----hccCCCCCEEECcCCc-cccc-cC--ccccCCCCEEECcCC-cccccC
Confidence 34566777777777643 322111111 2355677777776653 2111 00 013566777777663 233333
Q ss_pred HHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHh
Q 014524 140 AAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSI 219 (423)
Q Consensus 140 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 219 (423)
...+..+++|++|+++++ .+.......+ ..+++|++|+++++ .+.......+ ..+++|+.|++++|.+.......+
T Consensus 157 p~~~~~l~~L~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGN-VLVGKIPNSL-TNLTSLEFLTLASN-QLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred ChHHhcCCCCCEEECccC-cccccCChhh-hhCcCCCeeeccCC-CCcCcCChHH-cCcCCccEEECcCCccCCcCChhH
Confidence 344566777777777764 2222212222 23667777777665 2322212222 355667777777665555444556
Q ss_pred hccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhc
Q 014524 220 ATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD 299 (423)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (423)
..+++|++|++.++. +.......+. .+++|+.|++.++. +... .......+++|+.|+++++. +.......+.+
T Consensus 233 ~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~ 306 (968)
T PLN00113 233 GGLTSLNHLDLVYNN-LTGPIPSSLG-NLKNLQYLFLYQNK-LSGP-IPPSIFSLQKLISLDLSDNS--LSGEIPELVIQ 306 (968)
T ss_pred hcCCCCCEEECcCce-eccccChhHh-CCCCCCEEECcCCe-eecc-CchhHhhccCcCEEECcCCe--eccCCChhHcC
Confidence 666677777776542 2211112222 25666666666542 2211 11122235666666666554 33344444555
Q ss_pred CCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCC----------------
Q 014524 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH---------------- 363 (423)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------- 363 (423)
+++|+.|++++|.+.......+. .+++|+.|+++++. ++.... .....+++|+.|++++|.
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNK-FSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCC-CcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 66666666666554433222222 45556666665544 322111 111234455555555431
Q ss_pred -------CCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 014524 364 -------SITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 364 -------~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (423)
.++......+. .+++|+.|++++|. ++......+. .+++|+.|++++ +.++
T Consensus 384 ~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~Ls~-N~l~ 441 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNS-FSGELPSEFT-KLPLVYFLDISN-NNLQ 441 (968)
T ss_pred EEECcCCEecccCCHHHh-CCCCCCEEECcCCE-eeeECChhHh-cCCCCCEEECcC-Cccc
Confidence 12212122222 46677777777765 5433222333 677788888877 4444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=3.6e-20 Score=186.87 Aligned_cols=329 Identities=15% Similarity=0.091 Sum_probs=172.7
Q ss_pred HHHhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCCh
Q 014524 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD 137 (423)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 137 (423)
..+...+++|++|+++++. +... + .....++|++|+++++. +... ++.....+++|++|+++++. +..
T Consensus 111 ~~~~~~l~~L~~L~Ls~n~-l~~~----~----p~~~l~~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~~n~-l~~ 178 (968)
T PLN00113 111 DDIFTTSSSLRYLNLSNNN-FTGS----I----PRGSIPNLETLDLSNNM-LSGE-IPNDIGSFSSLKVLDLGGNV-LVG 178 (968)
T ss_pred hHHhccCCCCCEEECcCCc-cccc----c----CccccCCCCEEECcCCc-cccc-CChHHhcCCCCCEEECccCc-ccc
Confidence 3445577899999998753 3211 1 12345778888887763 3221 12223367778888887632 333
Q ss_pred HHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHH
Q 014524 138 REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC 217 (423)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 217 (423)
.....+.++++|++|+++++ .++...... ...+++|+.|+++++ .+.......+ ..+++|++|++++|.+......
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASN-QLVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cCChhhhhCcCCCeeeccCC-CCcCcCChH-HcCcCCccEEECcCC-ccCCcCChhH-hcCCCCCEEECcCceeccccCh
Confidence 33334566777777777764 332221222 233666777766655 2322222222 3556666666666655444444
Q ss_pred HhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHh
Q 014524 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (423)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (423)
.+..+++|+.|++.++. +.......+.. +++|++|+++++. +... +......+++|+.|+++++. +.......+
T Consensus 255 ~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n~--~~~~~~~~~ 328 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNK-LSGPIPPSIFS-LQKLISLDLSDNS-LSGE-IPELVIQLQNLEILHLFSNN--FTGKIPVAL 328 (968)
T ss_pred hHhCCCCCCEEECcCCe-eeccCchhHhh-ccCcCEEECcCCe-eccC-CChhHcCCCCCcEEECCCCc--cCCcCChhH
Confidence 55556666666666532 21111112222 4555555555432 1111 11222234455555554443 232333334
Q ss_pred hcCCcccEEEccCccCC------------------------hhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCC
Q 014524 298 RDLKNLEAITMDGARIS------------------------DSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVN 353 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~------------------------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 353 (423)
..+++|+.|++++|.+. ......+. ..++|+.|+++++. +.... ......+++
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~-l~~~~-p~~~~~~~~ 405 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNS-LEGEI-PKSLGACRS 405 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCE-ecccC-CHHHhCCCC
Confidence 44444444444444433 22222222 33455555555443 32221 122347899
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 014524 354 LKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCN 415 (423)
Q Consensus 354 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~ 415 (423)
|+.|++.+| .++......+. .+++|+.|++++|. ++......+ ..+++|+.|++++|.
T Consensus 406 L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 406 LRRVRLQDN-SFSGELPSEFT-KLPLVYFLDISNNN-LQGRINSRK-WDMPSLQMLSLARNK 463 (968)
T ss_pred CCEEECcCC-EeeeECChhHh-cCCCCCEEECcCCc-ccCccChhh-ccCCCCcEEECcCce
Confidence 999999986 44433333343 58999999999987 665333323 368999999999964
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=9.5e-21 Score=165.33 Aligned_cols=324 Identities=19% Similarity=0.178 Sum_probs=150.5
Q ss_pred CcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhc
Q 014524 66 YIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF 145 (423)
Q Consensus 66 ~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 145 (423)
..+.|++++ ..+.+..+..+ ...++|+++++..+. ++ .++.+.....+|++|++.+ +.++...-..+..
T Consensus 79 ~t~~Ldlsn-Nkl~~id~~~f------~nl~nLq~v~l~~N~-Lt--~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSN-NKLSHIDFEFF------YNLPNLQEVNLNKNE-LT--RIPRFGHESGHLEKLDLRH-NLISSVTSEELSA 147 (873)
T ss_pred ceeeeeccc-cccccCcHHHH------hcCCcceeeeeccch-hh--hcccccccccceeEEeeec-cccccccHHHHHh
Confidence 345566665 33444444333 355666666665542 11 1222222344566666655 3344444444444
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCc
Q 014524 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (423)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 225 (423)
++.|++|+|+. +.++......+. .-.++++|++.++ .++..+...+. .+.+|..|.++.|.++.-....+.++|+|
T Consensus 148 l~alrslDLSr-N~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 148 LPALRSLDLSR-NLISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred Hhhhhhhhhhh-chhhcccCCCCC-CCCCceEEeeccc-ccccccccccc-ccchheeeecccCcccccCHHHhhhcchh
Confidence 55555555554 222221111111 1234555555544 34333332222 23345555555554444444444444555
Q ss_pred cEEEecCCCCCCchhHHHH-----------------------HhcCCCCceEecCCCcccCcchHHHHHHhCCCCceecc
Q 014524 226 ESLVMVGCPCVDDTGLRFL-----------------------ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDA 282 (423)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~l-----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (423)
+.|++... .+.....-.+ ...+.++++|++..+ ++....-. ...++..|+.|++
T Consensus 224 ~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g-~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 224 ESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEG-WLFGLTSLEQLDL 300 (873)
T ss_pred hhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcc-cccccchhhhhcc
Confidence 55444431 1111100000 112344455544431 11111000 1112455666666
Q ss_pred CCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCC
Q 014524 283 GHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (423)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (423)
+++. +.......+..+++|+.|++++|.++.-.-..+. .+..|++|.++.+. ++... +.....+.+|+.|+++.+
T Consensus 301 S~Na--I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Ns-i~~l~-e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 301 SYNA--IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNS-IDHLA-EGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred chhh--hheeecchhhhcccceeEeccccccccCChhHHH-HHHHhhhhcccccc-hHHHH-hhHHHHhhhhhhhcCcCC
Confidence 5554 3333344445566666666666654332222222 33466666666544 32221 112235678888888763
Q ss_pred CC---CCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCC
Q 014524 363 HS---ITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGV 417 (423)
Q Consensus 363 ~~---l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i 417 (423)
.- +.| +. .....+++|++|++.++. +......++. +++.|+.|++.+ |-|
T Consensus 376 ~ls~~IED-aa-~~f~gl~~LrkL~l~gNq-lk~I~krAfs-gl~~LE~LdL~~-Nai 428 (873)
T KOG4194|consen 376 ELSWCIED-AA-VAFNGLPSLRKLRLTGNQ-LKSIPKRAFS-GLEALEHLDLGD-NAI 428 (873)
T ss_pred eEEEEEec-ch-hhhccchhhhheeecCce-eeecchhhhc-cCcccceecCCC-Ccc
Confidence 21 223 22 223357888888888876 6666666665 788888888877 544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=7.5e-21 Score=165.98 Aligned_cols=325 Identities=18% Similarity=0.157 Sum_probs=201.2
Q ss_pred cceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhh-c
Q 014524 67 IKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS-F 145 (423)
Q Consensus 67 l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~ 145 (423)
-+.++.++ ..+.......+ .....+..++|+++++ .+....+..+. ..|+|+++++.. +.++. ++.++ .
T Consensus 54 ~~lldcs~-~~lea~~~~~l----~g~lp~~t~~LdlsnN-kl~~id~~~f~-nl~nLq~v~l~~-N~Lt~--IP~f~~~ 123 (873)
T KOG4194|consen 54 TRLLDCSD-RELEAIDKSRL----KGFLPSQTQTLDLSNN-KLSHIDFEFFY-NLPNLQEVNLNK-NELTR--IPRFGHE 123 (873)
T ss_pred ceeeecCc-ccccccccccc----CCcCccceeeeecccc-ccccCcHHHHh-cCCcceeeeecc-chhhh--ccccccc
Confidence 34455544 33443333333 2445677889999987 45555555444 899999999987 33322 12222 3
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCc
Q 014524 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (423)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 225 (423)
..+|+.|+|.. +.++...-..+.. .|.|+.|+++.+ .+.......+ ..-.++++|++++|.++.-....+.++.+|
T Consensus 124 sghl~~L~L~~-N~I~sv~se~L~~-l~alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 124 SGHLEKLDLRH-NLISSVTSEELSA-LPALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ccceeEEeeec-cccccccHHHHHh-Hhhhhhhhhhhc-hhhcccCCCC-CCCCCceEEeeccccccccccccccccchh
Confidence 56799999998 4555544444443 788999999986 4443332222 234689999999999988888888888899
Q ss_pred cEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHh------------------------CCCCceec
Q 014524 226 ESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRG------------------------HSGLLQLD 281 (423)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------------------~~~L~~L~ 281 (423)
..|.++.. .++..... ..+++|+|+.|++..+ .+....... +.+ +.++++|+
T Consensus 200 ~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN-~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 200 LTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRN-RIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred eeeecccC-cccccCHH-Hhhhcchhhhhhcccc-ceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 99999973 44443333 3344899999998763 222221111 122 34555555
Q ss_pred cCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 282 AGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
+..+. +....-.++..+.+|+.|++++|.|......... .+++|+.|+++++. ++.-.-..+ ..+..|+.|+++.
T Consensus 276 L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~-i~~l~~~sf-~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 276 LETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNR-ITRLDEGSF-RVLSQLEELNLSH 350 (873)
T ss_pred cccch--hhhhhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccc-cccCChhHH-HHHHHhhhhcccc
Confidence 55444 3333344555677788888887765554444433 67888888888765 544322222 2446788888887
Q ss_pred CCCCCHHHHHHHHhhCCCccEEEeccCCCCC---HHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 362 CHSITDDAISAIADSCRGLVCLKIESCNMIT---EKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~---~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
+.++.-. +.....+.+|++|+++.+. ++ +++-..+ ..+++|+.|.+.+ |++..
T Consensus 351 -Nsi~~l~-e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f-~gl~~LrkL~l~g-Nqlk~ 406 (873)
T KOG4194|consen 351 -NSIDHLA-EGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAF-NGLPSLRKLRLTG-NQLKS 406 (873)
T ss_pred -cchHHHH-hhHHHHhhhhhhhcCcCCe-EEEEEecchhhh-ccchhhhheeecC-ceeee
Confidence 3443222 2222357899999988765 43 2232333 3689999999988 76643
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=7.3e-17 Score=142.35 Aligned_cols=278 Identities=22% Similarity=0.286 Sum_probs=185.3
Q ss_pred EEEccCcCCCChHHH-HHhhcCCCCcEEecCCCCCCChHHHHH---HHHhCccccccccccccccc--hhhHH---HHHh
Q 014524 126 SVDLSYCCGFGDREA-AALSFASGLKEVKLDKCLNVTDVGLAK---IAVRCVNLERLSLKWCMEIS--DLGID---LLCK 196 (423)
Q Consensus 126 ~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~---~~~~ 196 (423)
.|++.. ..+.+..+ ..+..+.+|++|++.++ .+++..... .....++++++.+.++ .+. ...+. ....
T Consensus 2 ~l~L~~-~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKG-ELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLT 78 (319)
T ss_pred cccccc-CcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHH
Confidence 345544 33443333 33445777999999995 566654444 3445677999998876 333 22222 2233
Q ss_pred cCCCCcEEeccCcccChhHHHHhhcc---CCccEEEecCCCCCCchhHHHHH---hcC-CCCceEecCCCcccCcch---
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATL---AKLESLVMVGCPCVDDTGLRFLE---SGC-PLLKTIFVSRCKFVSSTG--- 266 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~l~---~~~-~~L~~L~l~~~~~~~~~~--- 266 (423)
.+++|+.|+++++.+.......+..+ ++|++|+++++. +.+.....+. ..+ ++|+.|++.+|. ++...
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 156 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEA 156 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHH
Confidence 57799999999997765444444443 459999999864 4443333322 235 889999999864 44333
Q ss_pred HHHHHHhCCCCceeccCCCcccchHHHH----HHhhcCCcccEEEccCccCChhhHHHHH---hcCCCccEEeeccCCCC
Q 014524 267 LISVIRGHSGLLQLDAGHCFSELSTTLL----HHMRDLKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKCLGV 339 (423)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~ 339 (423)
+......+++|+.|+++++. +.+... ..+..+++|+.|++++|.+++.+...+. ..+++|++|++++|. +
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l 233 (319)
T cd00116 157 LAKALRANRDLKELNLANNG--IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-L 233 (319)
T ss_pred HHHHHHhCCCcCEEECcCCC--CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-C
Confidence 33344556789999999887 554333 3445667999999999988776654443 467889999999976 8
Q ss_pred ChHHHHHHHhcC----CCCcEEecCCCCCCCHHHHHHHHh---hCCCccEEEeccCCCCCHHHHHHHHh---cC-CCCCE
Q 014524 340 TNTGITQLVSGC----VNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESCNMITEKGLYQLGS---FC-LRLEE 408 (423)
Q Consensus 340 ~~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c~~i~~~~~~~l~~---~~-~~L~~ 408 (423)
++.++..+...+ +.|+.|++.+| .+++.+...+.+ .+++|+.+++++|. +++.+...+++ .. +.|+.
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~ 311 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELES 311 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhh
Confidence 887777666554 79999999986 666555544443 35789999999987 88776666553 22 58898
Q ss_pred EeccC
Q 014524 409 IDLTD 413 (423)
Q Consensus 409 L~l~~ 413 (423)
+++.+
T Consensus 312 ~~~~~ 316 (319)
T cd00116 312 LWVKD 316 (319)
T ss_pred cccCC
Confidence 88876
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.9e-18 Score=137.79 Aligned_cols=203 Identities=22% Similarity=0.368 Sum_probs=124.9
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCce
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (423)
.|++|+++.. .++...+..+...|.+|+.|.+.++.+.+.....+++-.+|+.|+++.|++++..++..+...|..|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3555555543 344444444444555555555555555555555555555555555555555555555444444555555
Q ss_pred EecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhc-CCcccEEEccCc--cCChhhHHHHHhcCCCccE
Q 014524 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD-LKNLEAITMDGA--RISDSCFQTISFNCKSLVE 330 (423)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~ 330 (423)
|+++. |.. .++..-.++.. -++|+.|+++|+ ++.+..+..+...||+|.+
T Consensus 265 LNlsW--------------------------c~l-~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 265 LNLSW--------------------------CFL-FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred cCchH--------------------------hhc-cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 55554 442 22222222222 235555555555 3555567788888999999
Q ss_pred EeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCE
Q 014524 331 IGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408 (423)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~ 408 (423)
|+++.|..+++..+..+. .++.|++|.++.|..+..+.+..+. ..|.|..|++.+| +++...+.+.+.+++|+.
T Consensus 318 LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeec-cCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 999998888885555554 7889999999999988877777665 4789999999987 566666767667777653
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=5e-16 Score=137.04 Aligned_cols=279 Identities=20% Similarity=0.209 Sum_probs=184.8
Q ss_pred EEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHH----hhcCCCCcEEecCCCCCCC--hHHHHH---HHH
Q 014524 100 SLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAA----LSFASGLKEVKLDKCLNVT--DVGLAK---IAV 170 (423)
Q Consensus 100 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~--~~~~~~---~~~ 170 (423)
.|+|.++ .+.......+....++|++|+++++. +++.+... +...+++++++++++ .+. ...+.. ...
T Consensus 2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccC-cccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHH
Confidence 3455544 35444455555567789999999854 55544333 334678999999874 344 233322 333
Q ss_pred hCccccccccccccccchhh---HHHHHhcCCCCcEEeccCcccChhHHHH----hhcc-CCccEEEecCCCCCCchhHH
Q 014524 171 RCVNLERLSLKWCMEISDLG---IDLLCKKCLDLKSLDVSYLKLTNDSFCS----IATL-AKLESLVMVGCPCVDDTGLR 242 (423)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~ 242 (423)
.+++|++|+++++ .+.... +..+... ++|++|+++++.+.+..... +..+ ++|+.|++.+|. ++.....
T Consensus 79 ~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 155 (319)
T cd00116 79 KGCGLQELDLSDN-ALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCE 155 (319)
T ss_pred hcCceeEEEccCC-CCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHH
Confidence 4679999999887 343222 2233333 56999999999877655443 3345 899999999864 4433322
Q ss_pred ---HHHhcCCCCceEecCCCcccCcchHHHHHH---hCCCCceeccCCCcccchHHH----HHHhhcCCcccEEEccCcc
Q 014524 243 ---FLESGCPLLKTIFVSRCKFVSSTGLISVIR---GHSGLLQLDAGHCFSELSTTL----LHHMRDLKNLEAITMDGAR 312 (423)
Q Consensus 243 ---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~ 312 (423)
.....+++|++|++.++ .+.+.++..+.. ..++|+.|++++|. +.+.. ...+..+++|+.|++++|.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 156 ALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG--LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc--cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 22334678999999885 455555544433 34699999999886 44333 3345568899999999999
Q ss_pred CChhhHHHHHhcC----CCccEEeeccCCCCChHHHHHH---HhcCCCCcEEecCCCCCCCHHHHHHHHhh---C-CCcc
Q 014524 313 ISDSCFQTISFNC----KSLVEIGLSKCLGVTNTGITQL---VSGCVNLKTIDLTCCHSITDDAISAIADS---C-RGLV 381 (423)
Q Consensus 313 ~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~-~~L~ 381 (423)
+++.++..+...+ +.|++|++.+|. +++.+...+ ...+++|+.+++++ +.+++++...+++. . +.|+
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchh
Confidence 8887777766543 799999999986 776555444 34557899999998 57777766555543 3 5889
Q ss_pred EEEeccCC
Q 014524 382 CLKIESCN 389 (423)
Q Consensus 382 ~L~l~~c~ 389 (423)
.+++.+.+
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 99888754
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.70 E-value=7.1e-17 Score=151.10 Aligned_cols=378 Identities=28% Similarity=0.425 Sum_probs=192.3
Q ss_pred ccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhcccccc-----chHHHHHHHhhcCCCcceEeecCCCCCCh
Q 014524 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRV-----LRVEFLFILLDKYPYIKTLDLSVCPRVND 80 (423)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 80 (423)
.....|++....++...+ ..+......+++.|............. ............+.....+..........
T Consensus 44 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (482)
T KOG1947|consen 44 FTLLLPDELLADLLLKLV-VLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSKVST 122 (482)
T ss_pred eeeccccchhhhcccccc-cccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCccccc
Confidence 444566667777777666 666667777888887764433211111 11122233333333333333222111111
Q ss_pred hHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCC-ChHHHHHhh-cCCCCcEEecCCCC
Q 014524 81 GTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGF-GDREAAALS-FASGLKEVKLDKCL 158 (423)
Q Consensus 81 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~ 158 (423)
.....+.. ........ .....................+..++.+....+... .......+. .++.|+.|.+.+|.
T Consensus 123 ~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 199 (482)
T KOG1947|consen 123 LSLLSIFS--LLVKLRNL-LLNLSLRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCS 199 (482)
T ss_pred cchhhhhh--hhhhcchh-hccccccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccc
Confidence 11111100 01111111 122221111222223333334455555555543322 222222233 36777777777777
Q ss_pred CCChHHHHHHHHhCcccccccccc-ccccchh--hHHHHHhcCCCCcEEeccCcc-cChhHHHHhhc-cCCccEEEecCC
Q 014524 159 NVTDVGLAKIAVRCVNLERLSLKW-CMEISDL--GIDLLCKKCLDLKSLDVSYLK-LTNDSFCSIAT-LAKLESLVMVGC 233 (423)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~ 233 (423)
.+++..+..+...+++|+.|++.+ +...... ....+...|++|+.|+++++. +++.++..+.. +++|++|.+.+|
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 777766667777777777777765 2222221 123344566777777777774 77777777665 777777777777
Q ss_pred CCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCcc-
Q 014524 234 PCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR- 312 (423)
Q Consensus 234 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~- 312 (423)
..+++.++..+...+++|++|+++.|..+++.++..+...+++++.|.+..... ++.++.+.+.++.
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLT 347 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhc
Confidence 667777777777777777777777777777777776666677766665444321 2222222222221
Q ss_pred CC-hhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCC--------------CCcEEecCCCCCCCHHHHHHHHhhC
Q 014524 313 IS-DSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV--------------NLKTIDLTCCHSITDDAISAIADSC 377 (423)
Q Consensus 313 ~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------~L~~L~l~~~~~l~~~~~~~~~~~~ 377 (423)
.. +.........+++++.+.+.++. ..+.+...+...|| .++.|++..|..+++..+......+
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~ 426 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSC 426 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhh
Confidence 11 12223333344555555544444 33333333333333 2456666666555555555554435
Q ss_pred CCccEEEeccCCCCCHHHHHHHH
Q 014524 378 RGLVCLKIESCNMITEKGLYQLG 400 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l~ 400 (423)
.+++.+++.+|..++......+.
T Consensus 427 ~~~~~l~~~~~~~~~~~~~~~~~ 449 (482)
T KOG1947|consen 427 SNLKDLDLSGCRVITLKSLEGFA 449 (482)
T ss_pred hccccCCccCcccccchhhhhhh
Confidence 55666666666655555554444
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=140.87 Aligned_cols=288 Identities=29% Similarity=0.470 Sum_probs=183.3
Q ss_pred CCCccEEEeccCCC-CchhHHHHHHHhCCCccEEEccCcCCCChHHHHHh-hcCCCCcEEecCC-CCCCCh--HHHHHHH
Q 014524 95 TRSLKSLILSRSTG-LRYRGLEMLARACPLLESVDLSYCCGFGDREAAAL-SFASGLKEVKLDK-CLNVTD--VGLAKIA 169 (423)
Q Consensus 95 ~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~-~~~~~~--~~~~~~~ 169 (423)
...++.+.+..+.. ........+...+++|+.|.+..+..+.+.....+ ..+++|+.|++++ +..... .....+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence 34555555554432 33444555555688888888888777777654433 3488888888876 222222 2234466
Q ss_pred HhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcc-cChhHHHHhhc-cCCccEEEecCCCCCCchhHHHHHhc
Q 014524 170 VRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLK-LTNDSFCSIAT-LAKLESLVMVGCPCVDDTGLRFLESG 247 (423)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~ 247 (423)
..|++|+.|++.++..+++.++..+...|++|+.|.+.++. +++.++..+.. +++|++|++++|..+++.++..+..+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 66788888888888668888888888778888888877774 78888887775 88888888888888877777777777
Q ss_pred CCCCceEecCCCc---ccCcchHHHHHHhCC-CCceeccCCCcccchHHHHHHhhcCCccc-EEEccCcc-CChhhHHHH
Q 014524 248 CPLLKTIFVSRCK---FVSSTGLISVIRGHS-GLLQLDAGHCFSELSTTLLHHMRDLKNLE-AITMDGAR-ISDSCFQTI 321 (423)
Q Consensus 248 ~~~L~~L~l~~~~---~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~-~~~~~~~~l 321 (423)
|++++.|.+..+. .+++..+........ .+..+.+.+|.. +++..+...+ ..... .+.+.+|. ++ ..+...
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~-l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~ 396 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPK-LTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELR 396 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCC-cchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHH
Confidence 8887776655433 233333322222121 333333333333 3322222222 11111 23344443 33 444444
Q ss_pred HhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEec
Q 014524 322 SFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIE 386 (423)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 386 (423)
...+..++.|++..|..+++..+......+.+++.+.+.+|..++......+.... ......+.
T Consensus 397 ~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 460 (482)
T KOG1947|consen 397 LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASNC-DLISLDVG 460 (482)
T ss_pred hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhccc-cccccccc
Confidence 43444589999999998999888887655889999999999999888877666543 44444443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=3.2e-14 Score=144.37 Aligned_cols=131 Identities=21% Similarity=0.329 Sum_probs=79.0
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCcc-CChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR-ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV 352 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 352 (423)
.++|+.|+++++.. .......+.++++|+.|++.+|. +.. +.... .+++|++|++++|..+.. +....+
T Consensus 777 ~~sL~~L~Ls~n~~--l~~lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~ 846 (1153)
T PLN03210 777 SPSLTRLFLSDIPS--LVELPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRT-----FPDIST 846 (1153)
T ss_pred cccchheeCCCCCC--ccccChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccc-----cccccc
Confidence 35777777777652 23344556777888888887763 221 11111 467788888887765432 112235
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 353 NLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
+|+.|+++++ .++. +..-...+++|+.|++.+|++++.... ....+++|+.+++++|.+++.
T Consensus 847 nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 847 NISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccc
Confidence 7777777763 4432 112223578888888888877765322 223577888888888877653
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-13 Score=113.56 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=122.5
Q ss_pred cCCCCcEEeccCcccChhHHHHh----hccCCccEEEecCCCCCCchhHHHH------------HhcCCCCceEecCCCc
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSI----ATLAKLESLVMVGCPCVDDTGLRFL------------ESGCPLLKTIFVSRCK 260 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l------------~~~~~~L~~L~l~~~~ 260 (423)
.+|+|+.|++++|.+...+++.+ .++..|++|.+.+|. +...+-..+ ...-+.|+.+...++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN- 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN- 167 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence 56677777777775555544432 346677777777653 222221111 112467777777663
Q ss_pred ccCcch---HHHHHHhCCCCceeccCCCcccchH----HHHHHhhcCCcccEEEccCccCChhhHHHHH---hcCCCccE
Q 014524 261 FVSSTG---LISVIRGHSGLLQLDAGHCFSELST----TLLHHMRDLKNLEAITMDGARISDSCFQTIS---FNCKSLVE 330 (423)
Q Consensus 261 ~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~ 330 (423)
.+.+.+ +...++..+.|+.+.+..+.. .. .....+..+++|+.|++..|-++..+-..++ ..+|+|+.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I--~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGI--RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccc--cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 333333 334455567788888777653 22 2334566788888888888876665554444 45677888
Q ss_pred EeeccCCCCChHHHHHHH----hcCCCCcEEecCCCCCCCHHHHHHHHh---hCCCccEEEeccCCCC--CHHHHHHHHh
Q 014524 331 IGLSKCLGVTNTGITQLV----SGCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESCNMI--TEKGLYQLGS 401 (423)
Q Consensus 331 L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c~~i--~~~~~~~l~~ 401 (423)
|.+++|. +.+.+...+. ...|+|+.|.+.+| .++.++...+.. ..|.|++|++++|. + .+.++..+..
T Consensus 246 l~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 246 LNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDEIAS 322 (382)
T ss_pred ecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHHHHH
Confidence 8888887 6665544443 34578888888884 566665554433 24788888888887 6 5566666665
Q ss_pred cCC
Q 014524 402 FCL 404 (423)
Q Consensus 402 ~~~ 404 (423)
.++
T Consensus 323 ~~~ 325 (382)
T KOG1909|consen 323 KFD 325 (382)
T ss_pred hcc
Confidence 553
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=2e-13 Score=138.66 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=71.1
Q ss_pred CCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 014524 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (423)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 379 (423)
+++|+.|++++|.........+ ..+++|+.|++++|..+... .... .+++|+.|++++|..+.. +....++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~n 847 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRT-----FPDISTN 847 (1153)
T ss_pred cccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCcccc-----ccccccc
Confidence 4678888888775332222223 36788888888888755431 1111 467888888888876532 2223468
Q ss_pred ccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 380 L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
|+.|+++++. ++.. ..-...+++|+.|++++|+++..
T Consensus 848 L~~L~Ls~n~-i~~i--P~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 848 ISDLNLSRTG-IEEV--PWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred cCEeECCCCC-CccC--hHHHhcCCCCCEEECCCCCCcCc
Confidence 8888888875 6542 22234789999999999998865
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=5.6e-12 Score=104.32 Aligned_cols=244 Identities=18% Similarity=0.269 Sum_probs=165.9
Q ss_pred HHHHHHhCccccccccccccccchhhHHHHH---hcCCCCcEEeccCc---ccChhH---HH----HhhccCCccEEEec
Q 014524 165 LAKIAVRCVNLERLSLKWCMEISDLGIDLLC---KKCLDLKSLDVSYL---KLTNDS---FC----SIATLAKLESLVMV 231 (423)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~---~~~~~~---~~----~~~~~~~L~~L~l~ 231 (423)
+.........+++++++++ .+.......+. ...++|+..++++. ...++. +. .+..+|+|+.++++
T Consensus 22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3444445788999999987 56555544443 34567777777765 222222 22 23457899999999
Q ss_pred CCCCCCc---hhHHHHHhcCCCCceEecCCCcccCcchHHHH------------HHhCCCCceeccCCCcccchH----H
Q 014524 232 GCPCVDD---TGLRFLESGCPLLKTIFVSRCKFVSSTGLISV------------IRGHSGLLQLDAGHCFSELST----T 292 (423)
Q Consensus 232 ~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~~~~----~ 292 (423)
++. +.. ..+..+...+..|++|.+.+|. +...+-..+ ...-+.|+.+....+. +.+ .
T Consensus 101 DNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr--len~ga~~ 176 (382)
T KOG1909|consen 101 DNA-FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR--LENGGATA 176 (382)
T ss_pred ccc-cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc--cccccHHH
Confidence 843 332 3455666668999999999874 433332221 1234688888877765 332 3
Q ss_pred HHHHhhcCCcccEEEccCccCChhhHHHHH---hcCCCccEEeeccCCCCChHHHHHHH---hcCCCCcEEecCCCCCCC
Q 014524 293 LLHHMRDLKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKCLGVTNTGITQLV---SGCVNLKTIDLTCCHSIT 366 (423)
Q Consensus 293 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~ 366 (423)
+...+...+.|+.+.+..|.|..++...+. ..||+|+.|++..+. ++..+-..++ ..+|+|+.|++++| .+.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dc-ll~ 254 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDC-LLE 254 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccc-ccc
Confidence 344566789999999999988777764433 479999999999876 7766644443 46688999999998 455
Q ss_pred HHHHHHHHh----hCCCccEEEeccCCCCCHHHHHHHHh---cCCCCCEEeccCCCCC
Q 014524 367 DDAISAIAD----SCRGLVCLKIESCNMITEKGLYQLGS---FCLRLEEIDLTDCNGV 417 (423)
Q Consensus 367 ~~~~~~~~~----~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~L~~L~l~~c~~i 417 (423)
+.+...+.+ ..|+|+.|.+.+|. |+.++...+.. ..|.|+.|++++ +..
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLng-N~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNG-NRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCc-ccc
Confidence 555554443 46899999999998 88877666552 368899999999 566
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.37 E-value=9.9e-15 Score=129.58 Aligned_cols=298 Identities=16% Similarity=0.158 Sum_probs=133.7
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
.++.||++.+..+. +...+++.-.-++..|..|++++ +.+.. ....+...+++-.|+|++ +++... ...+..++.
T Consensus 76 ~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLSh-NqL~E-vP~~LE~AKn~iVLNLS~-N~IetI-Pn~lfinLt 150 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSH-NQLRE-VPTNLEYAKNSIVLNLSY-NNIETI-PNSLFINLT 150 (1255)
T ss_pred cchhhHHHhhhccc-cccCCCCchhcccccceeeecch-hhhhh-cchhhhhhcCcEEEEccc-CccccC-CchHHHhhH
Confidence 34555555554432 22222221111445566666655 22221 122233455566666665 333332 122333345
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCce
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (423)
.|-.|+++.+ .+.. ++.-...+..|++|++++|++....+..+..+.+|+.|++++....-+.....+. .+.+|..
T Consensus 151 DLLfLDLS~N-rLe~--LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~d 226 (1255)
T KOG0444|consen 151 DLLFLDLSNN-RLEM--LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRD 226 (1255)
T ss_pred hHhhhccccc-hhhh--cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhh
Confidence 5555566544 2211 1112234556777777777666655666666666666666653221111111122 2455666
Q ss_pred EecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEee
Q 014524 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (423)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (423)
++++.+ +++. ++...-.+++|+.|+++++. +++ .-.......+|++|+++.|+++.-. .++. .++.|+.|.+
T Consensus 227 vDlS~N-~Lp~--vPecly~l~~LrrLNLS~N~--ite-L~~~~~~W~~lEtLNlSrNQLt~LP-~avc-KL~kL~kLy~ 298 (1255)
T KOG0444|consen 227 VDLSEN-NLPI--VPECLYKLRNLRRLNLSGNK--ITE-LNMTEGEWENLETLNLSRNQLTVLP-DAVC-KLTKLTKLYA 298 (1255)
T ss_pred cccccc-CCCc--chHHHhhhhhhheeccCcCc--eee-eeccHHHHhhhhhhccccchhccch-HHHh-hhHHHHHHHh
Confidence 666642 2221 22233335666666666654 221 1111223345666666666543311 1111 3445555555
Q ss_pred ccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
.++. ++-+++..-...+.+|+.+...++ .+ .-..+.++ .|++|++|.++.+.-||-..... .++.|+.||+.+
T Consensus 299 n~Nk-L~FeGiPSGIGKL~~Levf~aanN-~L-ElVPEglc-RC~kL~kL~L~~NrLiTLPeaIH---lL~~l~vLDlre 371 (1255)
T KOG0444|consen 299 NNNK-LTFEGIPSGIGKLIQLEVFHAANN-KL-ELVPEGLC-RCVKLQKLKLDHNRLITLPEAIH---LLPDLKVLDLRE 371 (1255)
T ss_pred ccCc-ccccCCccchhhhhhhHHHHhhcc-cc-ccCchhhh-hhHHHHHhcccccceeechhhhh---hcCCcceeeccC
Confidence 4433 444444333334445555555432 11 11122233 36667777776665554322111 346666666665
Q ss_pred CC
Q 014524 414 CN 415 (423)
Q Consensus 414 c~ 415 (423)
.+
T Consensus 372 Np 373 (1255)
T KOG0444|consen 372 NP 373 (1255)
T ss_pred Cc
Confidence 33
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.7e-13 Score=112.18 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=16.6
Q ss_pred CccccccccccccccchhhHHHHHhcCCCCcEEeccCc
Q 014524 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL 209 (423)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 209 (423)
+++|+.|.++.| +++...+..+...+|+|+.|.+.+|
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 344444444444 4444444444444444444444444
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.26 E-value=2.9e-13 Score=120.42 Aligned_cols=301 Identities=15% Similarity=0.092 Sum_probs=160.7
Q ss_pred hhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHH
Q 014524 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (423)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 140 (423)
+...|.|+++.++.. .+....+..- ......|..|+++.+. +.. ++.-.+...++-.|++++ +++....-
T Consensus 74 Ls~Lp~LRsv~~R~N-~LKnsGiP~d-----iF~l~dLt~lDLShNq-L~E--vP~~LE~AKn~iVLNLS~-N~IetIPn 143 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDN-NLKNSGIPTD-----IFRLKDLTILDLSHNQ-LRE--VPTNLEYAKNSIVLNLSY-NNIETIPN 143 (1255)
T ss_pred hccchhhHHHhhhcc-ccccCCCCch-----hcccccceeeecchhh-hhh--cchhhhhhcCcEEEEccc-CccccCCc
Confidence 334566666666552 2222221110 2356677777777652 221 222234567788888887 44554444
Q ss_pred HHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccCh-hHHHHh
Q 014524 141 AALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN-DSFCSI 219 (423)
Q Consensus 141 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~ 219 (423)
..+.++..|-.|+|++ +.+.. +..-.+.+.+|++|.+++++ +....+..+ ..+.+|+.|.+++.+-+- .....+
T Consensus 144 ~lfinLtDLLfLDLS~-NrLe~--LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSN-NRLEM--LPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred hHHHhhHhHhhhcccc-chhhh--cCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhcccccchhhcCCCch
Confidence 4555677777788877 33332 22223346678888887653 222222221 123345555555552221 122334
Q ss_pred hccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhc
Q 014524 220 ATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD 299 (423)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (423)
..+.+|..++++. ++++.. .+.+. .+++|+.|+++++ .++.... -...+.+|++|+++.+.. .....++.+
T Consensus 219 d~l~NL~dvDlS~-N~Lp~v-Pecly-~l~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrNQL---t~LP~avcK 289 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSE-NNLPIV-PECLY-KLRNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRNQL---TVLPDAVCK 289 (1255)
T ss_pred hhhhhhhhccccc-cCCCcc-hHHHh-hhhhhheeccCcC-ceeeeec--cHHHHhhhhhhccccchh---ccchHHHhh
Confidence 4567777777775 333321 12222 3678888888873 3433222 223367788888877642 234556677
Q ss_pred CCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 014524 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (423)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 379 (423)
+++|+.|.+.+|+++-+++..=...+.+|+.+...++. + +.+..-+..|++|+.|.++.+.-++- ..-...++.
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-L--ElVPEglcRC~kL~kL~L~~NrLiTL---PeaIHlL~~ 363 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-L--ELVPEGLCRCVKLQKLKLDHNRLITL---PEAIHLLPD 363 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-c--ccCchhhhhhHHHHHhcccccceeec---hhhhhhcCC
Confidence 77888887777776655554322244455555555432 1 11222233677777777777655552 222223567
Q ss_pred ccEEEeccCCCC
Q 014524 380 LVCLKIESCNMI 391 (423)
Q Consensus 380 L~~L~l~~c~~i 391 (423)
|+.|++..++++
T Consensus 364 l~vLDlreNpnL 375 (1255)
T KOG0444|consen 364 LKVLDLRENPNL 375 (1255)
T ss_pred cceeeccCCcCc
Confidence 777777776654
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.6e-12 Score=109.32 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=24.9
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCc
Q 014524 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL 209 (423)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 209 (423)
+.+|+.+.|+++ .+...+.....+.|++++.|+++.+---.-..+..+++.+|+|+.|.++.|
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 344444444442 233222223333444444444444311122233344444444444444444
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-11 Score=114.19 Aligned_cols=128 Identities=16% Similarity=0.287 Sum_probs=60.0
Q ss_pred CCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCcc
Q 014524 250 LLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLV 329 (423)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 329 (423)
.|+.|.+.+ +.+++..++.+ ...++|+.|+++++. +...-...+.+++.|+.|.++||.+..-. ..++ .|+.|+
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLsyNr--L~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~ 433 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLSYNR--LNSFPASKLRKLEELEELNLSGNKLTTLP-DTVA-NLGRLH 433 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhh-ccccceeeeeecccc--cccCCHHHHhchHHhHHHhcccchhhhhh-HHHH-hhhhhH
Confidence 344444443 23444433333 235556666665554 23223334445555666666666544322 2222 445555
Q ss_pred EEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 330 EIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
+|...++. +. .+..+. .+|.|+.++++. +.++...+..... -|+|+.|+++|+.
T Consensus 434 tL~ahsN~-l~--~fPe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQ-LL--SFPELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCc-ee--echhhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCc
Confidence 55544332 21 122232 456666666664 4555444433221 1566666666665
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=102.20 Aligned_cols=206 Identities=19% Similarity=0.261 Sum_probs=111.9
Q ss_pred ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChh------------HHHHhh---ccCCccEEEecCCCCCC
Q 014524 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTND------------SFCSIA---TLAKLESLVMVGCPCVD 237 (423)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~~~---~~~~L~~L~l~~~~~~~ 237 (423)
-++.+.++.+. .+....+..+.+ ..|+++.+.+...... .+..+. .-.+|++|+++|...+.
T Consensus 60 f~ltki~l~~~-~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 60 FNLTKIDLKNV-TLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred heeEEeeccce-ecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 35666666654 344444444432 3388888876511111 111111 14567777776654555
Q ss_pred chhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCCh-h
Q 014524 238 DTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD-S 316 (423)
Q Consensus 238 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~ 316 (423)
......++..+|+|++|.+.+. .+....+..+..++|+|..|+++++. ++. ...++++++|+.|.+.+-.+.. .
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~n--l~GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN--ISN--LSGISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred ccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC--ccC--cHHHhccccHHHHhccCCCCCchh
Confidence 5555556666677777777663 34444466666666777777776654 222 2445566666666666665443 4
Q ss_pred hHHHHHhcCCCccEEeeccCCCCChHH-HHHH---HhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccC
Q 014524 317 CFQTISFNCKSLVEIGLSKCLGVTNTG-ITQL---VSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESC 388 (423)
Q Consensus 317 ~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 388 (423)
.+..+. .+++|+.||++......+.. +... ...+|+|+.|+.++ +.++.+.++.+...-|+|+.+.+-+|
T Consensus 212 ~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 212 DLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred hHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCccHhhhhhhhh
Confidence 444554 56666666666544333321 1111 12356666666666 56666666666665566666655443
No 23
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.95 E-value=2.7e-10 Score=67.89 Aligned_cols=38 Identities=18% Similarity=0.438 Sum_probs=32.9
Q ss_pred cccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhh
Q 014524 7 LDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (423)
Q Consensus 7 ~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~ 45 (423)
|..||+||+.+||+||+ .+|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999999 999999999999999987543
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.95 E-value=1.3e-10 Score=108.38 Aligned_cols=248 Identities=18% Similarity=0.171 Sum_probs=142.5
Q ss_pred ccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhC
Q 014524 93 SWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRC 172 (423)
Q Consensus 93 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 172 (423)
...++++.|....++ ++.... ...-.+|+.+++++ ..+.... ..+..+.+|+.+++.. +.++.. +..+.. .
T Consensus 216 ~~g~~l~~L~a~~n~-l~~~~~---~p~p~nl~~~dis~-n~l~~lp-~wi~~~~nle~l~~n~-N~l~~l-p~ri~~-~ 286 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNP-LTTLDV---HPVPLNLQYLDISH-NNLSNLP-EWIGACANLEALNANH-NRLVAL-PLRISR-I 286 (1081)
T ss_pred ecCcchheeeeccCc-ceeecc---ccccccceeeecch-hhhhcch-HHHHhcccceEecccc-hhHHhh-HHHHhh-h
Confidence 345666666666553 221000 00234677788776 3344333 5566778888887776 334221 122222 4
Q ss_pred ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHH----------Hh-------------h--ccCCccE
Q 014524 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC----------SI-------------A--TLAKLES 227 (423)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------~~-------------~--~~~~L~~ 227 (423)
.+|+.|.+..+ .+.. +.......+.|++|++..|.+..-... .+ . .++.|+.
T Consensus 287 ~~L~~l~~~~n-el~y--ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 287 TSLVSLSAAYN-ELEY--IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhHHHHHhhhh-hhhh--CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence 55666665544 2211 122223456677777776643321100 00 0 1334566
Q ss_pred EEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEE
Q 014524 228 LVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAIT 307 (423)
Q Consensus 228 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 307 (423)
|.+.+ +.+++..++.+.. +++|+.|+++.+ .+..... .....++.|++|.++++. + ......+.+++.|++|.
T Consensus 364 Lylan-N~Ltd~c~p~l~~-~~hLKVLhLsyN-rL~~fpa-s~~~kle~LeeL~LSGNk--L-~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 364 LYLAN-NHLTDSCFPVLVN-FKHLKVLHLSYN-RLNSFPA-SKLRKLEELEELNLSGNK--L-TTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHhc-Ccccccchhhhcc-ccceeeeeeccc-ccccCCH-HHHhchHHhHHHhcccch--h-hhhhHHHHhhhhhHHHh
Confidence 66665 4566666665554 789999999874 2222111 223346788999998875 2 34446777888899998
Q ss_pred ccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCC
Q 014524 308 MDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHS 364 (423)
Q Consensus 308 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (423)
..+|.+.... .++ ..++|+.++++.+. ++...+.... ..|+|++|+++|+..
T Consensus 437 ahsN~l~~fP--e~~-~l~qL~~lDlS~N~-L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHSNQLLSFP--ELA-QLPQLKVLDLSCNN-LSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCCceeech--hhh-hcCcceEEecccch-hhhhhhhhhC-CCcccceeeccCCcc
Confidence 8888765433 444 67899999998654 7666655544 338999999998764
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.94 E-value=4e-09 Score=99.96 Aligned_cols=213 Identities=22% Similarity=0.189 Sum_probs=147.6
Q ss_pred HHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhh-------HHHHH------hcCCCCcEEec
Q 014524 140 AAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLG-------IDLLC------KKCLDLKSLDV 206 (423)
Q Consensus 140 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~------~~~~~L~~L~l 206 (423)
...+...-++...++.+ .......+..+.+ ..|+++.+.......... +..+. ..-.+|++|++
T Consensus 53 ~~~~~~~f~ltki~l~~-~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI 129 (699)
T KOG3665|consen 53 LERIIRKFNLTKIDLKN-VTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDI 129 (699)
T ss_pred HHhhhhhheeEEeeccc-eecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCc
Confidence 33344455788888887 4555555555544 238888887653332211 11111 12368999999
Q ss_pred cCc-ccChhHHHHhhc-cCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCC
Q 014524 207 SYL-KLTNDSFCSIAT-LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGH 284 (423)
Q Consensus 207 ~~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (423)
++. .+.......++. +|+|++|.+.+. .+....+..+..++|+|..|+|+++ +++.. .-...+++|+.|.+.+
T Consensus 130 ~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 130 SGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred cccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccC
Confidence 998 455555667776 999999999984 4444557777778999999999985 44443 3344578999999888
Q ss_pred CcccchHHHHHHhhcCCcccEEEccCccCChhh--HH---HHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEec
Q 014524 285 CFSELSTTLLHHMRDLKNLEAITMDGARISDSC--FQ---TISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDL 359 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 359 (423)
-.. .+......+..+++|+.|+++.....+.. +. .....+|+|+.|+.++.. ++...++.+...-|+|+.+.+
T Consensus 205 Le~-e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 205 LEF-ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred CCC-CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHhhhhh
Confidence 764 44566778889999999999987533322 21 122458999999999855 888899999888899998877
Q ss_pred CCC
Q 014524 360 TCC 362 (423)
Q Consensus 360 ~~~ 362 (423)
-+|
T Consensus 283 ~~~ 285 (699)
T KOG3665|consen 283 LDC 285 (699)
T ss_pred hhh
Confidence 653
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.84 E-value=1.5e-07 Score=75.98 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCccEEeeccCCCCChHHHHHHH----hcCCCCcEEecCCCCCCCHHHHHHHHhhC---CCccEEEeccCCCCCHHHHHH
Q 014524 326 KSLVEIGLSKCLGVTNTGITQLV----SGCVNLKTIDLTCCHSITDDAISAIADSC---RGLVCLKIESCNMITEKGLYQ 398 (423)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~---~~L~~L~l~~c~~i~~~~~~~ 398 (423)
.+|+.+.+.++. +..+++..++ .++.+|+.|++.+ +..+..+-..++..+ +.|+.|.+..|- ++..+...
T Consensus 185 ~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~ 261 (388)
T COG5238 185 ENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKS 261 (388)
T ss_pred cCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchh-hccccHHH
Confidence 345555554433 4444332221 2445555555554 233444433333322 344555555554 44433333
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-09 Score=92.59 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=47.8
Q ss_pred HhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHh
Q 014524 322 SFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGS 401 (423)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 401 (423)
...+++|++|+++++. ++...-..+ .....++.|.+..+ .+.... ..+.+.+..|+.|+++++. ||-.....+-
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-e~~a~l~eL~L~~N-~l~~v~-~~~f~~ls~L~tL~L~~N~-it~~~~~aF~- 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-EGAAELQELYLTRN-KLEFVS-SGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQ- 343 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-cchhhhhhhhcCcc-hHHHHH-HHhhhccccceeeeecCCe-eEEEeccccc-
Confidence 3467788888887755 554332222 34557777777763 332211 2233456778888888765 6644433332
Q ss_pred cCCCCCEEecc
Q 014524 402 FCLRLEEIDLT 412 (423)
Q Consensus 402 ~~~~L~~L~l~ 412 (423)
....|.+|.+-
T Consensus 344 ~~~~l~~l~l~ 354 (498)
T KOG4237|consen 344 TLFSLSTLNLL 354 (498)
T ss_pred ccceeeeeehc
Confidence 44566666653
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.69 E-value=4e-08 Score=93.90 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=37.4
Q ss_pred cccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCcc
Q 014524 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (423)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 381 (423)
+|+.|++++|.+.... ...++|+.|+++++. ++. +.. ..++|+.|++++| .++. ....+. .+++|+
T Consensus 383 ~L~~LdLs~N~Lt~LP-----~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~N-qLt~-LP~sl~-~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNRLTSLP-----VLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRN-QLTR-LPESLI-HLSSET 448 (788)
T ss_pred ccceEEecCCcccCCC-----CcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccC-cccc-cChHHh-hccCCC
Confidence 4555555555443211 112455566665544 331 111 1234555566552 3331 111222 356666
Q ss_pred EEEeccCCCCCHHHHHHH
Q 014524 382 CLKIESCNMITEKGLYQL 399 (423)
Q Consensus 382 ~L~l~~c~~i~~~~~~~l 399 (423)
.|++++|+ ++...+..+
T Consensus 449 ~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 449 TVNLEGNP-LSERTLQAL 465 (788)
T ss_pred eEECCCCC-CCchHHHHH
Confidence 66666665 555444443
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.68 E-value=1.5e-08 Score=96.80 Aligned_cols=237 Identities=17% Similarity=0.095 Sum_probs=110.9
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
++|+.|.+.+ +.++... ...++|++|+++++ .++... ...++|+.|++.++ .+.. +....++|
T Consensus 222 ~~L~~L~L~~-N~Lt~LP----~lp~~Lk~LdLs~N-~LtsLP-----~lp~sL~~L~Ls~N-~L~~-----Lp~lp~~L 284 (788)
T PRK15387 222 AHITTLVIPD-NNLTSLP----ALPPELRTLEVSGN-QLTSLP-----VLPPGLLELSIFSN-PLTH-----LPALPSGL 284 (788)
T ss_pred cCCCEEEccC-CcCCCCC----CCCCCCcEEEecCC-ccCccc-----CcccccceeeccCC-chhh-----hhhchhhc
Confidence 3566666665 3333211 01456777777663 444321 11356666666654 2221 11123456
Q ss_pred cEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceec
Q 014524 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (423)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (423)
+.|++++|.+.... ...++|+.|+++++ .+.. +.....+|+.|.+.++ .++. +.. ..++|+.|+
T Consensus 285 ~~L~Ls~N~Lt~LP----~~p~~L~~LdLS~N-~L~~-----Lp~lp~~L~~L~Ls~N-~L~~--LP~---lp~~Lq~Ld 348 (788)
T PRK15387 285 CKLWIFGNQLTSLP----VLPPGLQELSVSDN-QLAS-----LPALPSELCKLWAYNN-QLTS--LPT---LPSGLQELS 348 (788)
T ss_pred CEEECcCCcccccc----ccccccceeECCCC-cccc-----CCCCcccccccccccC-cccc--ccc---cccccceEe
Confidence 66666666444211 12356677776653 2221 1111234566666553 2221 111 123566666
Q ss_pred cCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 282 AGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
++++. +.. . . ...++|+.|.+++|.+.. +.. ...+|+.|+++++. ++. +....++|+.|++++
T Consensus 349 LS~N~--Ls~-L-P--~lp~~L~~L~Ls~N~L~~--LP~---l~~~L~~LdLs~N~-Lt~-----LP~l~s~L~~LdLS~ 411 (788)
T PRK15387 349 VSDNQ--LAS-L-P--TLPSELYKLWAYNNRLTS--LPA---LPSGLKELIVSGNR-LTS-----LPVLPSELKELMVSG 411 (788)
T ss_pred cCCCc--cCC-C-C--CCCcccceehhhcccccc--Ccc---cccccceEEecCCc-ccC-----CCCcccCCCEEEccC
Confidence 66654 221 0 0 012456666666665442 111 22456777776654 432 111224667777776
Q ss_pred CCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 014524 362 CHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (423)
| .++. +. ....+|+.|+++++. ++... ..+. .+++|+.|++++ |.++
T Consensus 412 N-~Lss--IP---~l~~~L~~L~Ls~Nq-Lt~LP-~sl~-~L~~L~~LdLs~-N~Ls 458 (788)
T PRK15387 412 N-RLTS--LP---MLPSGLLSLSVYRNQ-LTRLP-ESLI-HLSSETTVNLEG-NPLS 458 (788)
T ss_pred C-cCCC--CC---cchhhhhhhhhccCc-ccccC-hHHh-hccCCCeEECCC-CCCC
Confidence 4 3331 11 112356666666655 54211 1222 566777777766 5554
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=8.4e-09 Score=87.31 Aligned_cols=280 Identities=18% Similarity=0.127 Sum_probs=129.8
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
..+....+.|..+. ++.-. +.....+++|++|+++. +.+......++..+++|.+|.+.+.+.+++.. .....++.
T Consensus 65 LP~~tveirLdqN~-I~~iP-~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k~~F~gL~ 140 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQ-ISSIP-PGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLP-KGAFGGLS 140 (498)
T ss_pred CCCcceEEEeccCC-cccCC-hhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhh-hhHhhhHH
Confidence 34566667776652 22211 11223567888888887 56777777777777788777777755666543 22333466
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHh-------
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLES------- 246 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~------- 246 (423)
.|+.|.+..+ .+.-. ....+..+++|..|.+++|.+....-..+..+..++.+++.....+.+-.+..++.
T Consensus 141 slqrLllNan-~i~Ci-r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 141 SLQRLLLNAN-HINCI-RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHhcChh-hhcch-hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 6777776644 22211 22233456777777777773322111123334555555554432221111111110
Q ss_pred ---cCCCCceEecCCCcccCcchHHHHHHhCCCCcee---ccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHH
Q 014524 247 ---GCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL---DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQT 320 (423)
Q Consensus 247 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 320 (423)
.........+.. ..+.......+.. .++.+ -.+.|.. ...--...+.++++|+.|++++|.++...-..
T Consensus 219 etsgarc~~p~rl~~-~Ri~q~~a~kf~c---~~esl~s~~~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYY-KRINQEDARKFLC---SLESLPSRLSSEDFP-DSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hcccceecchHHHHH-HHhcccchhhhhh---hHHhHHHhhccccCc-CCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 001111111110 0011111111111 11111 1111111 11112233666777777777777655433222
Q ss_pred HHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 321 ISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 321 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
+. ....+++|.+..+. +... -..+.+.+.+|+.|++.+ +.|+-.+..++. ....|.+|.+-+++
T Consensus 294 Fe-~~a~l~eL~L~~N~-l~~v-~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~-~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 294 FE-GAAELQELYLTRNK-LEFV-SSGMFQGLSGLKTLSLYD-NQITTVAPGAFQ-TLFSLSTLNLLSNP 357 (498)
T ss_pred hc-chhhhhhhhcCcch-HHHH-HHHhhhccccceeeeecC-CeeEEEeccccc-ccceeeeeehccCc
Confidence 22 34466666665543 2211 122334566777777776 355544433333 34566666665544
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=7e-07 Score=72.16 Aligned_cols=193 Identities=18% Similarity=0.206 Sum_probs=100.9
Q ss_pred hcCCCCcEEeccCcccChhHH----HHhhccCCccEEEecCCCCCCchhHH-------HHH-----hcCCCCceEecCCC
Q 014524 196 KKCLDLKSLDVSYLKLTNDSF----CSIATLAKLESLVMVGCPCVDDTGLR-------FLE-----SGCPLLKTIFVSRC 259 (423)
Q Consensus 196 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-------~l~-----~~~~~L~~L~l~~~ 259 (423)
..||+|+..++++|.+..... ..+++-..|.+|.+.+|. +....-. .++ ..-|.|+++.+..+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 367888888888885443332 234557778888887753 2211111 111 12367777766553
Q ss_pred cc--cCcchHHHHHHhCCCCceeccCCCcccchHHH-----HHHhhcCCcccEEEccCccCChhhHHHHH---hcCCCcc
Q 014524 260 KF--VSSTGLISVIRGHSGLLQLDAGHCFSELSTTL-----LHHMRDLKNLEAITMDGARISDSCFQTIS---FNCKSLV 329 (423)
Q Consensus 260 ~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~ 329 (423)
.. .+..-....++.-.+|+.+.+..+. +..+. +..+..+.+|+.|++..|.++..+-..++ ..++.|+
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNg--Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNG--IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecC--cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 21 1122222333333567777776665 33332 22334577777777777766655544433 3556677
Q ss_pred EEeeccCCCCChHHHHHHHhc-----CCCCcEEecCCCCC----CCHHHHHHHH-hhCCCccEEEeccCCCCCH
Q 014524 330 EIGLSKCLGVTNTGITQLVSG-----CVNLKTIDLTCCHS----ITDDAISAIA-DSCRGLVCLKIESCNMITE 393 (423)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~----l~~~~~~~~~-~~~~~L~~L~l~~c~~i~~ 393 (423)
+|.+..|- ++..+...+.+. .|+|..|...++.. +-+..+..+. ...|-|..|.+.++. ++.
T Consensus 246 EL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E 317 (388)
T COG5238 246 ELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKE 317 (388)
T ss_pred hccccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chh
Confidence 77777776 555554444432 36677666655321 1111122222 135566666666654 443
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.5e-07 Score=77.01 Aligned_cols=207 Identities=17% Similarity=0.150 Sum_probs=111.1
Q ss_pred CcEEecCCCCCCChHHHHHHHHhCccccccccccccccch-hhHHHHHhcCCCCcEEeccCcccChhHHHHh-hccCCcc
Q 014524 149 LKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISD-LGIDLLCKKCLDLKSLDVSYLKLTNDSFCSI-ATLAKLE 226 (423)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 226 (423)
++-|.+.+|.--+...+..+...+..++.+++.++ .+++ ..+..+.+.+|.|+.|.++.|++.... ..+ ....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceE
Confidence 33444555432233345556666777788887776 3433 346666777888888888887655321 122 2355777
Q ss_pred EEEecCCCCCCchhHHHHHhcCCCCceEecCCCc----ccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCc
Q 014524 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCK----FVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302 (423)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 302 (423)
.|.+.| +.++......+...+|.++.|.++.++ ++.+..... ..+.+++|+...|......+.......+|+
T Consensus 125 ~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 125 VLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 777776 455555555556666777777665431 111111111 124566666666543111122222234667
Q ss_pred ccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCC-hHHHHHHHhcCCCCcEEecCCCC
Q 014524 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVT-NTGITQLVSGCVNLKTIDLTCCH 363 (423)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 363 (423)
+..+-+..+++.+..-..-...+|.+.-|.++... +. +..+.++ ..+|.|..|.+.+.+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~L-n~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDAL-NGFPQLVDLRVSENP 260 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccc-cccHHHHHHH-cCCchhheeeccCCc
Confidence 77776666655544433333345566666665544 43 3334444 366777777777643
No 33
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.57 E-value=1.7e-08 Score=60.53 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=32.9
Q ss_pred ccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhh
Q 014524 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (423)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~ 45 (423)
+|.+||+|++.+||++|+ ..|+.+++.|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 578999999999999999 999999999999999986544
No 34
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.3e-07 Score=72.89 Aligned_cols=106 Identities=18% Similarity=0.292 Sum_probs=74.6
Q ss_pred ccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccE
Q 014524 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVC 382 (423)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 382 (423)
++.++-+++.|..+++..+. .++.++.|.+.+|..+.|.++..+..-.|+|+.|+|++|+.||+.++..+. .+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence 45566666667777777776 777888888888888888888777776788888888888888888877776 4788888
Q ss_pred EEeccCCCCCHHHH--HHHHhcCCCCCEEe
Q 014524 383 LKIESCNMITEKGL--YQLGSFCLRLEEID 410 (423)
Q Consensus 383 L~l~~c~~i~~~~~--~~l~~~~~~L~~L~ 410 (423)
|.+.+-+.+..... ..+-..+|+++..-
T Consensus 181 L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 181 LHLYDLPYVANLELVQRQLEEALPKCDIVG 210 (221)
T ss_pred HHhcCchhhhchHHHHHHHHHhCcccceec
Confidence 88877665544322 22334566665543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=2.6e-08 Score=77.34 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=8.2
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARIS 314 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 314 (423)
+.+|+.|+++++.. . .+..+..+++|+.|.+++|.++
T Consensus 41 l~~L~~L~Ls~N~I--~--~l~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 41 LDKLEVLDLSNNQI--T--KLEGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp -TT--EEE-TTS----S----TT----TT--EEE--SS---
T ss_pred hcCCCEEECCCCCC--c--cccCccChhhhhhcccCCCCCC
Confidence 34455555555442 1 1122333444455555444443
No 36
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1e-07 Score=73.46 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=75.8
Q ss_pred CccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCC
Q 014524 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406 (423)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L 406 (423)
.++.++=+++. +..++++.+- .++.++.|.+.+|..+.|.++..+....++|+.|+|++|++||+.++..+. .+++|
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 45667767765 8888988874 899999999999999999999999988899999999999999999999998 89999
Q ss_pred CEEeccCC
Q 014524 407 EEIDLTDC 414 (423)
Q Consensus 407 ~~L~l~~c 414 (423)
+.|++.+=
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 99998773
No 37
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.46 E-value=1.7e-07 Score=54.08 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhh
Q 014524 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (423)
Q Consensus 10 LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~ 45 (423)
||+|++.+||.+++ ..|+.+++.|||+|+.+....
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999999 999999999999999986543
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=8.2e-08 Score=78.43 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=132.4
Q ss_pred CCcEEeccCcccChhH-HHHhhc-cCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCC
Q 014524 200 DLKSLDVSYLKLTNDS-FCSIAT-LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (423)
.++-|.+.++.+...+ +..++. ...++.+++.++.--....+..+..++|.|+.|+++.+.-.++.. .......+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccce
Confidence 3445555666554433 334443 788888888874333334566677788999999998643222221 111124578
Q ss_pred ceeccCCCcccchHHHHH-HhhcCCcccEEEccCcc-----CChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcC
Q 014524 278 LQLDAGHCFSELSTTLLH-HMRDLKNLEAITMDGAR-----ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351 (423)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~-----~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 351 (423)
+.|-+.+.. +...... .+..+|.++.|.++.|+ +.++.... .-+.+++|++..|....+.....+.+.+
T Consensus 124 ~~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 124 RVLVLNGTG--LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred EEEEEcCCC--CChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 888887766 4433333 35567888888887772 33333322 3457778888787755566667777888
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCH-HHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITE-KGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 352 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
|++..+-+..|+ +.+.....-.+.+|.+-.|.++... |.. .++.++. ++++|+.|.+++ +-+.|
T Consensus 199 pnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln-~f~~l~dlRv~~-~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALN-GFPQLVDLRVSE-NPLSD 263 (418)
T ss_pred ccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHc-CCchhheeeccC-Ccccc
Confidence 999999888864 3333344444457888888888766 654 4566665 899999999988 54443
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=8.9e-07 Score=68.89 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=14.9
Q ss_pred CCccEEEccCcCCCChHHHHHhh-cCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALS-FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 200 (423)
.++++|++.+ ..++.. ..+. .+.+|+.|+++++ .++.. ..+ ..+++|+.|.++++ .++..+ ..+...+|+
T Consensus 19 ~~~~~L~L~~-n~I~~I--e~L~~~l~~L~~L~Ls~N-~I~~l--~~l-~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 19 VKLRELNLRG-NQISTI--ENLGATLDKLEVLDLSNN-QITKL--EGL-PGLPRLKTLDLSNN-RISSIS-EGLDKNLPN 89 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HHHHHH-TT
T ss_pred cccccccccc-cccccc--cchhhhhcCCCEEECCCC-CCccc--cCc-cChhhhhhcccCCC-CCCccc-cchHHhCCc
Confidence 3456666655 222221 1222 2455666666553 33321 111 12445555555544 333221 111123455
Q ss_pred CcEEeccCccc
Q 014524 201 LKSLDVSYLKL 211 (423)
Q Consensus 201 L~~L~l~~~~~ 211 (423)
|++|.+++|.+
T Consensus 90 L~~L~L~~N~I 100 (175)
T PF14580_consen 90 LQELYLSNNKI 100 (175)
T ss_dssp --EEE-TTS--
T ss_pred CCEEECcCCcC
Confidence 55555555533
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.26 E-value=4.3e-07 Score=88.82 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=54.6
Q ss_pred hCCCccEEEccCcCC-CChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcC
Q 014524 120 ACPLLESVDLSYCCG-FGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKC 198 (423)
Q Consensus 120 ~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 198 (423)
.+++|++|-+..... +.......+..+|.|+.|++++|..... ++.....+-+|++|++++. .+. .++.-...+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t-~I~--~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDT-GIS--HLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCC-Ccc--ccchHHHHH
Confidence 355666666655221 2333333455577777777776433322 2333333666777777655 333 122222345
Q ss_pred CCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
..|.+|++..+..-.........+++|++|.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeec
Confidence 5667777666521111112223367777777765
No 41
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.21 E-value=9.1e-06 Score=78.44 Aligned_cols=87 Identities=11% Similarity=0.169 Sum_probs=40.5
Q ss_pred CcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCH--HHHHHHHhhCC
Q 014524 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITD--DAISAIADSCR 378 (423)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~ 378 (423)
++|+.|++++|.+..... .+ .++|++|++++|. ++... ..+. +.|+.|++++| .++. ..+..+...++
T Consensus 346 ~sL~~L~Ls~N~L~~LP~-~l---p~~L~~LdLs~N~-Lt~LP-~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 346 PELQVLDVSKNQITVLPE-TL---PPTITTLDVSRNA-LTNLP-ENLP---AALQIMQASRN-NLVRLPESLPHFRGEGP 415 (754)
T ss_pred CcccEEECCCCCCCcCCh-hh---cCCcCEEECCCCc-CCCCC-HhHH---HHHHHHhhccC-CcccCchhHHHHhhcCC
Confidence 466666666665442110 11 2466666666654 33210 0111 24566666653 2221 12223333346
Q ss_pred CccEEEeccCCCCCHHHHHH
Q 014524 379 GLVCLKIESCNMITEKGLYQ 398 (423)
Q Consensus 379 ~L~~L~l~~c~~i~~~~~~~ 398 (423)
++..|++.+++ ++...+..
T Consensus 416 ~l~~L~L~~Np-ls~~tl~~ 434 (754)
T PRK15370 416 QPTRIIVEYNP-FSERTIQN 434 (754)
T ss_pred CccEEEeeCCC-ccHHHHHH
Confidence 66667776666 55544443
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=1.4e-06 Score=71.55 Aligned_cols=126 Identities=22% Similarity=0.230 Sum_probs=65.3
Q ss_pred hCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCC
Q 014524 273 GHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV 352 (423)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 352 (423)
.+..|++++++++. ...+-..+.-.|.++.|++++|.+...+- ++ ..++|+.|+++++. ++. +..+...+.
T Consensus 282 TWq~LtelDLS~N~---I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La-~L~~L~~LDLS~N~-Ls~--~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNL---ITQIDESVKLAPKLRRLILSQNRIRTVQN--LA-ELPQLQLLDLSGNL-LAE--CVGWHLKLG 352 (490)
T ss_pred hHhhhhhccccccc---hhhhhhhhhhccceeEEeccccceeeehh--hh-hcccceEeecccch-hHh--hhhhHhhhc
Confidence 35567777776653 22333344456677777777775443221 22 45677777777654 322 222333456
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCH-HHHHHHHhcCCCCCEEeccC
Q 014524 353 NLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITE-KGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~L~~L~l~~ 413 (423)
|.+.|.++++ .+. .+..+. .+-+|..|++.++. |.. +.+..+. ++|.|+.+.+.+
T Consensus 353 NIKtL~La~N-~iE--~LSGL~-KLYSLvnLDl~~N~-Ie~ldeV~~IG-~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIE--TLSGLR-KLYSLVNLDLSSNQ-IEELDEVNHIG-NLPCLETLRLTG 408 (490)
T ss_pred CEeeeehhhh-hHh--hhhhhH-hhhhheeccccccc-hhhHHHhcccc-cccHHHHHhhcC
Confidence 6666666653 221 111222 13456666666655 433 2333333 566666666655
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=1.3e-06 Score=85.58 Aligned_cols=107 Identities=18% Similarity=0.093 Sum_probs=44.6
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (423)
.+|.|+.|++++|.-....+..++++-+|++|+++++ .+. .++.-...+..|.+|++......... ..+...+++
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~ 643 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQS 643 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-Ccc--ccchHHHHHHhhheeccccccccccc--cchhhhccc
Confidence 4555555555554333333344555555555555542 222 11111122445555555543222211 222233455
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEc
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITM 308 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 308 (423)
|+.|.+.......+......+.++.+|+.+.+
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 55555544321022233333444444444444
No 44
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.08 E-value=1.7e-05 Score=76.55 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=147.3
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
.+...|++++. .++.... .+ .++|+.|+++++ .++.... .+ +++|+.|+++++ .+..... . ..++|
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-~I--p~~L~~L~Ls~N-~LtsLP~-~l---~~nL~~L~Ls~N-~LtsLP~-~---l~~~L 243 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-CI--PEQITTLILDNN-ELKSLPE-NL---QGNIKTLYANSN-QLTSIPA-T---LPDTI 243 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-cc--ccCCcEEEecCC-CCCcCCh-hh---ccCCCEEECCCC-ccccCCh-h---hhccc
Confidence 45778888762 2332110 11 257888998884 5553221 11 368999998876 4443211 1 12578
Q ss_pred cEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceec
Q 014524 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (423)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (423)
+.|++++|.+... ...+ ..+|+.|+++++ .+.. +.. ...++|+.|+++++ .++... .. ..++|+.|+
T Consensus 244 ~~L~Ls~N~L~~L-P~~l--~s~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~N-~Lt~LP--~~--lp~sL~~L~ 310 (754)
T PRK15370 244 QEMELSINRITEL-PERL--PSALQSLDLFHN-KISC--LPE--NLPEELRYLSVYDN-SIRTLP--AH--LPSGITHLN 310 (754)
T ss_pred cEEECcCCccCcC-ChhH--hCCCCEEECcCC-ccCc--ccc--ccCCCCcEEECCCC-ccccCc--cc--chhhHHHHH
Confidence 9999999865532 1112 257899999863 4432 111 11358999999875 333211 10 124688888
Q ss_pred cCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 282 AGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
++++. +.. ... ...++|+.|.+++|.++.... . .+++|+.|+++++. ++... ..+ .++|+.|++++
T Consensus 311 Ls~N~--Lt~-LP~--~l~~sL~~L~Ls~N~Lt~LP~-~---l~~sL~~L~Ls~N~-L~~LP-~~l---p~~L~~LdLs~ 376 (754)
T PRK15370 311 VQSNS--LTA-LPE--TLPPGLKTLEAGENALTSLPA-S---LPPELQVLDVSKNQ-ITVLP-ETL---PPTITTLDVSR 376 (754)
T ss_pred hcCCc--ccc-CCc--cccccceeccccCCccccCCh-h---hcCcccEEECCCCC-CCcCC-hhh---cCCcCEEECCC
Confidence 88765 321 111 123689999999987654211 1 23799999999876 55311 112 36899999999
Q ss_pred CCCCCHHHHHHHHhhCCCccEEEeccCCCCCH--HHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 362 CHSITDDAISAIADSCRGLVCLKIESCNMITE--KGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~--~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
| .++.- ...+. +.|+.|++++|. ++. ..+..+...++++..|++.+ |.++.
T Consensus 377 N-~Lt~L-P~~l~---~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~-Npls~ 429 (754)
T PRK15370 377 N-ALTNL-PENLP---AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEY-NPFSE 429 (754)
T ss_pred C-cCCCC-CHhHH---HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeC-CCccH
Confidence 6 44421 11222 368899999986 653 23444444678999999998 77653
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=1.6e-06 Score=79.71 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=16.6
Q ss_pred cCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccC
Q 014524 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKC 336 (423)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 336 (423)
-++.|+.|++++|++.+.. .+ ..|+.|++|+|+++
T Consensus 185 ll~ale~LnLshNk~~~v~--~L-r~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NL-RRLPKLKHLDLSYN 219 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HH-Hhcccccccccccc
Confidence 3445555555555544422 11 24555555555543
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.84 E-value=6.6e-06 Score=67.70 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=31.5
Q ss_pred cccCCCccEEEeccCCC------CchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCC
Q 014524 92 LSWTRSLKSLILSRSTG------LRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (423)
Q Consensus 92 ~~~~~~L~~L~l~~~~~------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (423)
...+.+|+.|.+++... +....++--...+.+|+.+.++.|..-. .......-|.|+.+.+.+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHN 246 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeec
Confidence 45667788887765431 1111111112346778888887754211 111112245666666654
No 47
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.83 E-value=7.1e-06 Score=70.30 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=51.1
Q ss_pred cCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCC
Q 014524 247 GCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCK 326 (423)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 326 (423)
.+++|..|+++++ .+.+... -......|+.|+++.+.. ......+.....++.+-.+++++.......+. ++.
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~--e~~~lv~Lq~LnlS~NrF---r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~-nm~ 505 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPE--EMGSLVRLQTLNLSFNRF---RMLPECLYELQTLETLLASNNQIGSVDPSGLK-NMR 505 (565)
T ss_pred hhhcceeeecccc-hhhhcch--hhhhhhhhheeccccccc---ccchHHHhhHHHHHHHHhccccccccChHHhh-hhh
Confidence 3566666666652 1222111 111234466666665431 11111122223344444454544433333333 556
Q ss_pred CccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCC
Q 014524 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH 363 (423)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 363 (423)
+|..|++.++. -..+..+..+|.+|++|++.|++
T Consensus 506 nL~tLDL~nNd---lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 506 NLTTLDLQNND---LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hcceeccCCCc---hhhCChhhccccceeEEEecCCc
Confidence 77777776543 23344555677777777777753
No 48
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.80 E-value=8.5e-06 Score=69.85 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=21.7
Q ss_pred HHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccC
Q 014524 295 HHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKC 336 (423)
Q Consensus 295 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 336 (423)
..+..+++|..|++++|.+.+-..+.. ....|+.|+++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~~--~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEEMG--SLVRLQTLNLSFN 468 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchhhh--hhhhhheeccccc
Confidence 344556677777777764443222221 2344677777654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=3.1e-05 Score=71.70 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=23.1
Q ss_pred HHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCC
Q 014524 117 LARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCL 158 (423)
Q Consensus 117 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 158 (423)
+..-.++++.|.+-....-...+...+..+.+|++|.+.+|.
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcc
Confidence 334455666666554332222223345567778888887764
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.41 E-value=2.8e-05 Score=49.26 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=7.0
Q ss_pred hhcCCcccEEEccCcc
Q 014524 297 MRDLKNLEAITMDGAR 312 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~ 312 (423)
+..+++|+.|++++|.
T Consensus 21 f~~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNN 36 (61)
T ss_dssp TTTGTTESEEEETSSS
T ss_pred HcCCCCCCEeEccCCc
Confidence 3344444444444443
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.34 E-value=3.9e-05 Score=48.56 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=18.3
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
.+++|+.|++++|.+.......+..+++|++|++++
T Consensus 23 ~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 445555555555544433333444555555555554
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.24 E-value=0.00041 Score=34.91 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=10.6
Q ss_pred CCccEEEeccCCCCCHHHHHHH
Q 014524 378 RGLVCLKIESCNMITEKGLYQL 399 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l 399 (423)
++|+.|++++|++||+.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444555555544554444444
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.18 E-value=5.9e-05 Score=69.02 Aligned_cols=189 Identities=24% Similarity=0.333 Sum_probs=104.0
Q ss_pred cCCccEEEecCCCCCCchhHHHHHhcC----CCCceEecCCCcccCcchHHHHHH---hCCCCceeccCCCcccchHH--
Q 014524 222 LAKLESLVMVGCPCVDDTGLRFLESGC----PLLKTIFVSRCKFVSSTGLISVIR---GHSGLLQLDAGHCFSELSTT-- 292 (423)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~-- 292 (423)
.++|+.|+++++ .+.+.+...+...+ ..++.|++..| .++..+...+.. ..+.++.+++..+.. ....
T Consensus 114 ~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l-~~~g~~ 190 (478)
T KOG4308|consen 114 LPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGL-IELGLL 190 (478)
T ss_pred cccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhccc-chhhhH
Confidence 455555555552 33344444333322 23455555554 344444433333 356777777777663 2111
Q ss_pred -HHHHhh----cCCcccEEEccCccCChhhHHHHHh---cCCC-ccEEeeccCCCCChHHHHHHHhcC----CCCcEEec
Q 014524 293 -LLHHMR----DLKNLEAITMDGARISDSCFQTISF---NCKS-LVEIGLSKCLGVTNTGITQLVSGC----VNLKTIDL 359 (423)
Q Consensus 293 -~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~-L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l 359 (423)
....+. ...++++|++.++.+++.....+.. ..++ +.++++..+. +.+.++..+.+.+ +.++.+++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhh
Confidence 111222 3567888888888777655554442 3333 5567777655 7776666655444 35588888
Q ss_pred CCCCCCCHHHHHHHHh---hCCCccEEEeccCCCCCHHHHHHHHhc---CCCCCEEeccCCCC
Q 014524 360 TCCHSITDDAISAIAD---SCRGLVCLKIESCNMITEKGLYQLGSF---CLRLEEIDLTDCNG 416 (423)
Q Consensus 360 ~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~---~~~L~~L~l~~c~~ 416 (423)
..| .+++.+...+.+ .++.++.+.+..++ +++.+...+.+. ...+-.+.+.+++.
T Consensus 270 ~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 270 SRN-SITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred hcC-CccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchhhhccccCc
Confidence 885 555555554443 36788888888877 776666655543 23344444444333
No 54
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.12 E-value=0.00071 Score=34.02 Aligned_cols=24 Identities=46% Similarity=0.947 Sum_probs=16.2
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHH
Q 014524 351 CVNLKTIDLTCCHSITDDAISAIA 374 (423)
Q Consensus 351 ~~~L~~L~l~~~~~l~~~~~~~~~ 374 (423)
||+|+.|++++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466777777777777777766654
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.12 E-value=0.00088 Score=64.41 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=16.5
Q ss_pred HhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccC
Q 014524 296 HMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKC 336 (423)
Q Consensus 296 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 336 (423)
.+..+++|+.|++++|.+.......+. .+++|+.|+++++
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N 476 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYN 476 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCC
Confidence 344444444444444443322222222 3444444444443
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.00025 Score=58.03 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=36.8
Q ss_pred CCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCc
Q 014524 276 GLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLK 355 (423)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 355 (423)
+.+.|+..+|. +++ +....+++.|+.|.|+-|.|+. +..+. .|.+|++|.|..+. +.+..-...++++|+|+
T Consensus 20 ~vkKLNcwg~~--L~D--Isic~kMp~lEVLsLSvNkIss--L~pl~-rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCG--LDD--ISICEKMPLLEVLSLSVNKISS--LAPLQ-RCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCC--ccH--HHHHHhcccceeEEeecccccc--chhHH-HHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 44455555544 222 2333455555555555555443 22222 45555555555433 44433333334555555
Q ss_pred EEecCCC
Q 014524 356 TIDLTCC 362 (423)
Q Consensus 356 ~L~l~~~ 362 (423)
.|.|..+
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 5555543
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.95 E-value=9e-06 Score=61.18 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=9.7
Q ss_pred HHhhcCCcccEEEccCcc
Q 014524 295 HHMRDLKNLEAITMDGAR 312 (423)
Q Consensus 295 ~~~~~~~~L~~L~l~~~~ 312 (423)
..++++.+|+.|.+..++
T Consensus 144 ~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhhhhcceeEEeeccCc
Confidence 344555556666555554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.93 E-value=0.0012 Score=58.58 Aligned_cols=134 Identities=13% Similarity=0.221 Sum_probs=69.3
Q ss_pred hcCCCCcEEeccCcccChhHHHHhhcc-CCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhC
Q 014524 196 KKCLDLKSLDVSYLKLTNDSFCSIATL-AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGH 274 (423)
Q Consensus 196 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 274 (423)
..|++++.|++++|.+..- ..+ ++|++|.+.+|..++... ..+ .++|+.|.+.+|..+.. -.
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-----P~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~s--------LP 111 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-----PVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEISG--------LP 111 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-----CCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCcccccc--------cc
Confidence 3568888888888744322 133 368888888776543211 011 25788888887654331 13
Q ss_pred CCCceeccCCCcccchHHHHHHhhcC-CcccEEEccCcc-CChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcC-
Q 014524 275 SGLLQLDAGHCFSELSTTLLHHMRDL-KNLEAITMDGAR-ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC- 351 (423)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~- 351 (423)
++|+.|.+..... . .+..+ ++|+.|.+.++. ........ .-.++|++|.+++|..+. +...+
T Consensus 112 ~sLe~L~L~~n~~--~-----~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~LP 176 (426)
T PRK15386 112 ESVRSLEIKGSAT--D-----SIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEKLP 176 (426)
T ss_pred cccceEEeCCCCC--c-----ccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccccc
Confidence 4677777654321 1 12222 356666664432 11111110 012577777777766331 11112
Q ss_pred CCCcEEecCC
Q 014524 352 VNLKTIDLTC 361 (423)
Q Consensus 352 ~~L~~L~l~~ 361 (423)
.+|+.|.++.
T Consensus 177 ~SLk~L~ls~ 186 (426)
T PRK15386 177 ESLQSITLHI 186 (426)
T ss_pred ccCcEEEecc
Confidence 3677777765
No 59
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.91 E-value=0.0006 Score=62.56 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=56.1
Q ss_pred CCCceEecCCCcccCcchHHHH---HHhCCC-CceeccCCCcccchHHHHHHhh----cC-CcccEEEccCccCChhhHH
Q 014524 249 PLLKTIFVSRCKFVSSTGLISV---IRGHSG-LLQLDAGHCFSELSTTLLHHMR----DL-KNLEAITMDGARISDSCFQ 319 (423)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~---~~~~~~-L~~L~l~~~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~ 319 (423)
.++++|++.+|. ++......+ ....+. +..+++..+. +.+..+..+. .. ++++.+++..|.+++.+..
T Consensus 204 ~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~--l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 204 SSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNK--LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred ccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcC--cchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 456666666652 333332222 222233 4446665554 4444333322 23 4567777777766665544
Q ss_pred HHH---hcCCCccEEeeccCCCCChHHHHHHHhc---CCCCcEEecCCCCC
Q 014524 320 TIS---FNCKSLVEIGLSKCLGVTNTGITQLVSG---CVNLKTIDLTCCHS 364 (423)
Q Consensus 320 ~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~ 364 (423)
.+. ..+++++.+.+.+.. +++.+.....+. ...+..+.+.++..
T Consensus 281 ~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 281 DLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred HHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchhhhccccCc
Confidence 333 456677777776655 666554443332 23445555554333
No 60
>PLN03150 hypothetical protein; Provisional
Probab=96.70 E-value=0.0039 Score=60.06 Aligned_cols=88 Identities=10% Similarity=0.088 Sum_probs=48.5
Q ss_pred HhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcC
Q 014524 272 RGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351 (423)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 351 (423)
..+++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|+.|+++++. ++...-..+....
T Consensus 439 ~~L~~L~~L~Ls~N~--l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N~-l~g~iP~~l~~~~ 514 (623)
T PLN03150 439 SKLRHLQSINLSGNS--IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNS-LSGRVPAALGGRL 514 (623)
T ss_pred hCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCCc-ccccCChHHhhcc
Confidence 346677777776665 4444455566677777777777766544433343 56677777776654 3322212222222
Q ss_pred CCCcEEecCCCC
Q 014524 352 VNLKTIDLTCCH 363 (423)
Q Consensus 352 ~~L~~L~l~~~~ 363 (423)
.++..+++.++.
T Consensus 515 ~~~~~l~~~~N~ 526 (623)
T PLN03150 515 LHRASFNFTDNA 526 (623)
T ss_pred ccCceEEecCCc
Confidence 345556665543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.00075 Score=54.91 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=43.1
Q ss_pred CccccccccccccccchhhHHHHHhcCCCCcEEeccCcccC-hhHHHHhhccCCccEEEecCCCCCCchh-HHHHHhcCC
Q 014524 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLT-NDSFCSIATLAKLESLVMVGCPCVDDTG-LRFLESGCP 249 (423)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~ 249 (423)
+|+|++|.++.+..-...++..++..+|+|+++.+++|.+. -..+..+..+++|..|++..|....-.. -+.++..++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 45666666655422333344555556677777777777544 2333444455666666666553222111 122333345
Q ss_pred CCceEecC
Q 014524 250 LLKTIFVS 257 (423)
Q Consensus 250 ~L~~L~l~ 257 (423)
+|+.|+-.
T Consensus 144 ~L~~LD~~ 151 (260)
T KOG2739|consen 144 SLKYLDGC 151 (260)
T ss_pred hhcccccc
Confidence 55555443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.00022 Score=57.89 Aligned_cols=89 Identities=24% Similarity=0.191 Sum_probs=51.1
Q ss_pred hhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccch-hhHHHHHhcCCCCcEEeccCccc---ChhHHHH
Q 014524 143 LSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISD-LGIDLLCKKCLDLKSLDVSYLKL---TNDSFCS 218 (423)
Q Consensus 143 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~ 218 (423)
+..+++|+.|.++....-...++..++..+|+|++++++++ .+.. ..+.. .+.+++|..|++.+|.. .+..-..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhcchhhhhcccCCccccccHHHHH
Confidence 33466777777776433334455666666778888877766 3432 12222 23566777888877733 2322233
Q ss_pred hhccCCccEEEecCC
Q 014524 219 IATLAKLESLVMVGC 233 (423)
Q Consensus 219 ~~~~~~L~~L~l~~~ 233 (423)
+.-+|+|+.|+-..+
T Consensus 139 f~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHhhhhcccccccc
Confidence 344777777776543
No 63
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.61 E-value=7.7e-06 Score=61.54 Aligned_cols=106 Identities=22% Similarity=0.149 Sum_probs=48.1
Q ss_pred CCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCC
Q 014524 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (423)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (423)
..+++.|.+++|.++.. ...++.+.+|+.|.+.+. .+.+. -..+.. +++|+.|++.-+ .+. .+..-+..+|.|
T Consensus 32 ~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nn-qie~l-p~~iss-l~klr~lnvgmn-rl~--~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNN-QIEEL-PTSISS-LPKLRILNVGMN-RLN--ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccc-hhhhc-Chhhhh-chhhhheecchh-hhh--cCccccCCCchh
Confidence 35667777777754321 234555666777766642 22211 111222 566666655431 110 011112234566
Q ss_pred ceeccCCCcccchHH-HHHHhhcCCcccEEEccCcc
Q 014524 278 LQLDAGHCFSELSTT-LLHHMRDLKNLEAITMDGAR 312 (423)
Q Consensus 278 ~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 312 (423)
+.|++.++. +.+. ....+..+..|+.|.++.++
T Consensus 105 evldltynn--l~e~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 105 EVLDLTYNN--LNENSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred hhhhccccc--cccccCCcchhHHHHHHHHHhcCCC
Confidence 666666554 2222 12223334455555555553
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0011 Score=54.54 Aligned_cols=115 Identities=15% Similarity=0.053 Sum_probs=76.5
Q ss_pred CCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCc
Q 014524 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL 328 (423)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 328 (423)
.+.+.|+.++| .+++. .+...++.|+.|.++-+.. ..+..+..|.+|+.|.|..|.|.+..-.....+.|+|
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkI----ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKI----SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeecccc----ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 56778888886 34543 3445688999998887653 3355677888999999988887764433344588999
Q ss_pred cEEeeccCCCCChH---HHHHHHhcCCCCcEEecCCCCCCCHHHHHHHH
Q 014524 329 VEIGLSKCLGVTNT---GITQLVSGCVNLKTIDLTCCHSITDDAISAIA 374 (423)
Q Consensus 329 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 374 (423)
+.|.|..++..... --...++.+|+|++|+= ..++.+.++...
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~AL 136 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEEAL 136 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHHHH
Confidence 99998765533222 23445567888888863 455655555443
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.56 E-value=0.0038 Score=36.06 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=19.9
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 378 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
++|+.|+++++. |++. ......+++|+.|++++ +.+++
T Consensus 1 ~~L~~L~l~~N~-i~~l--~~~l~~l~~L~~L~l~~-N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDL--PPELSNLPNLETLNLSN-NPISD 38 (44)
T ss_dssp TT-SEEEETSSS--SSH--GGHGTTCTTSSEEEETS-SCCSB
T ss_pred CcceEEEccCCC-Cccc--CchHhCCCCCCEEEecC-CCCCC
Confidence 356666666665 5542 22123666666666666 45554
No 66
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.54 E-value=0.0019 Score=56.47 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=35.8
Q ss_pred CccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhh
Q 014524 5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (423)
Q Consensus 5 ~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~ 44 (423)
..|.+||.|++..|..+|+..-|+.+++.||+.||.....
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3589999999999999998678999999999999997543
No 67
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.33 E-value=0.0029 Score=52.82 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.2
Q ss_pred CccccchHHHHHHHHHhcC----CcchhhHHHHHHHHHHHHHhh
Q 014524 5 SALDVLTEDLLVRVREKIG----DELDSKTWRLVCKEFSRVDSV 44 (423)
Q Consensus 5 ~~~~~LP~eil~~If~~L~----~~~d~~~~~~vcr~w~~~~~~ 44 (423)
..|..|||||+..||...- +.+++.++++|||.|+..+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARD 148 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence 3578999999999998552 268999999999999987643
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.05 E-value=0.008 Score=34.74 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=14.3
Q ss_pred cccEEEccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
+|++|++++|.+++-.. .+ ..+++|+.|+++++.
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l-~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-EL-SNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HG-TTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCc-hH-hCCCCCCEEEecCCC
Confidence 44555555554443211 12 245555555555543
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.99 E-value=0.0034 Score=49.11 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=67.3
Q ss_pred CCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChH-HHHHHHhcCCC
Q 014524 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNT-GITQLVSGCVN 353 (423)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~ 353 (423)
.+...+++.++.. .....+..++.|..|.+++|.|+...- .+....|+|+.|.+.++. +..- .+..++ .||.
T Consensus 42 d~~d~iDLtdNdl----~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa-~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL----RKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNS-IQELGDLDPLA-SCPK 114 (233)
T ss_pred cccceecccccch----hhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcc-hhhhhhcchhc-cCCc
Confidence 4566667666542 334556778889999999997765322 233356889999998866 4433 344443 7899
Q ss_pred CcEEecCCCCCCCHHHHHH-HHhhCCCccEEEeccC
Q 014524 354 LKTIDLTCCHSITDDAISA-IADSCRGLVCLKIESC 388 (423)
Q Consensus 354 L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~c 388 (423)
|++|.+-+++.-....... +...+|+|+.||+.+-
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9999998854322111111 1113689999998873
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.66 E-value=0.0074 Score=50.92 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=36.9
Q ss_pred CCCccccch----HHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhh
Q 014524 3 GSSALDVLT----EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (423)
Q Consensus 3 ~~~~~~~LP----~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~ 44 (423)
..|.+..|| ++|...||+||+ ..++.++-+|||+|+.+...
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhcc
Confidence 457888999 999999999999 99999999999999998543
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.66 E-value=0.014 Score=53.15 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=16.1
Q ss_pred CCCcEEeccCcccChhHHHHhhcc-CCccEEEecC
Q 014524 199 LDLKSLDVSYLKLTNDSFCSIATL-AKLESLVMVG 232 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~ 232 (423)
+.++.|++.++.+++-. ...... ++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~ 149 (394)
T COG4886 116 TNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSD 149 (394)
T ss_pred cceeEEecCCcccccCc-cccccchhhcccccccc
Confidence 56777777766443211 111112 2566666654
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.64 E-value=0.0064 Score=47.66 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=68.8
Q ss_pred CCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChh-hHHHHHhcCCC
Q 014524 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDS-CFQTISFNCKS 327 (423)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~ 327 (423)
.....+++.++..... ..+.++++|.+|.+.++. ++......-..+++|+.|.+.+|.+..- .+..++ .||+
T Consensus 42 d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNr--It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNR--ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPK 114 (233)
T ss_pred cccceecccccchhhc----ccCCCccccceEEecCCc--ceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCc
Confidence 4555666665322222 223456888899988876 5554444445678899999999875442 244444 7899
Q ss_pred ccEEeeccCCCCChHH-H-HHHHhcCCCCcEEecCCCC
Q 014524 328 LVEIGLSKCLGVTNTG-I-TQLVSGCVNLKTIDLTCCH 363 (423)
Q Consensus 328 L~~L~l~~~~~~~~~~-~-~~~~~~~~~L~~L~l~~~~ 363 (423)
|++|.+-+++ ++... . ..++..+|+|+.|++.+-.
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998866 44322 2 2334567999999998643
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.93 E-value=0.026 Score=27.57 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=11.0
Q ss_pred CCccEEEeccCCCCCHHHHHHHH
Q 014524 378 RGLVCLKIESCNMITEKGLYQLG 400 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l~ 400 (423)
++|+.|++++|. |++.++..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 455566666555 5555555443
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.05 E-value=0.05 Score=26.50 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=10.3
Q ss_pred CcccEEEccCccCChhhHHHH
Q 014524 301 KNLEAITMDGARISDSCFQTI 321 (423)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l 321 (423)
++|+.|++++|.+++++...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555555544
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.05 E-value=0.15 Score=45.71 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHhCCCCceeccCCCcccchHHHHHHhhcC-CcccEEEccCcc-CChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHH
Q 014524 271 IRGHSGLLQLDAGHCFSELSTTLLHHMRDL-KNLEAITMDGAR-ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLV 348 (423)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 348 (423)
...+++++.|++++|. +.. +..+ ++|+.|.+++|. +.. +... ..++|++|.+++|..+.. +
T Consensus 48 ~~~~~~l~~L~Is~c~--L~s-----LP~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~s-----L- 110 (426)
T PRK15386 48 IEEARASGRLYIKDCD--IES-----LPVLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEISG-----L- 110 (426)
T ss_pred HHHhcCCCEEEeCCCC--Ccc-----cCCCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCcccccc-----c-
Confidence 3447899999999885 222 1233 369999998874 211 1111 125899999998864531 1
Q ss_pred hcCCCCcEEecCC
Q 014524 349 SGCVNLKTIDLTC 361 (423)
Q Consensus 349 ~~~~~L~~L~l~~ 361 (423)
-+.|+.|++.+
T Consensus 111 --P~sLe~L~L~~ 121 (426)
T PRK15386 111 --PESVRSLEIKG 121 (426)
T ss_pred --ccccceEEeCC
Confidence 14566666654
No 76
>PF13013 F-box-like_2: F-box-like domain
Probab=93.79 E-value=0.095 Score=37.07 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=26.8
Q ss_pred ccccchHHHHHHHHHhcCCcchhhHHHHHHH
Q 014524 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCK 36 (423)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~d~~~~~~vcr 36 (423)
.+.+||.|++..||++.. ..+...+..+|+
T Consensus 21 tl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 378899999999999999 888888888887
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.71 E-value=0.056 Score=49.29 Aligned_cols=174 Identities=22% Similarity=0.238 Sum_probs=78.8
Q ss_pred hcCCCCcEEecCCCCCCChHHHHHHHHhC-ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhcc
Q 014524 144 SFASGLKEVKLDKCLNVTDVGLAKIAVRC-VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL 222 (423)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 222 (423)
...+.++.|++.+ ..+++. ....... ++|+.|+++.. .+... ..-...+++|+.|++++|.+.+... .....
T Consensus 113 ~~~~~l~~L~l~~-n~i~~i--~~~~~~~~~nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~ 185 (394)
T COG4886 113 LELTNLTSLDLDN-NNITDI--PPLIGLLKSNLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFNDLSDLPK-LLSNL 185 (394)
T ss_pred hcccceeEEecCC-cccccC--ccccccchhhccccccccc-chhhh--hhhhhccccccccccCCchhhhhhh-hhhhh
Confidence 3446677777666 333332 1122223 26777777655 23221 1112356777777777775543211 11145
Q ss_pred CCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCc
Q 014524 223 AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302 (423)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 302 (423)
++|+.|++++. .+.... ........|+++.+.+...... ........++..+.+.+... ......+..+++
T Consensus 186 ~~L~~L~ls~N-~i~~l~--~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~---~~~~~~~~~l~~ 256 (394)
T COG4886 186 SNLNNLDLSGN-KISDLP--PEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKL---EDLPESIGNLSN 256 (394)
T ss_pred hhhhheeccCC-ccccCc--hhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCcee---eeccchhccccc
Confidence 66666666653 222211 1111123466666655321111 11122234444444333321 111234445555
Q ss_pred ccEEEccCccCChhhHHHHHhcCCCccEEeeccC
Q 014524 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKC 336 (423)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 336 (423)
++.|++.++.+++... + ....+++.|++++.
T Consensus 257 l~~L~~s~n~i~~i~~--~-~~~~~l~~L~~s~n 287 (394)
T COG4886 257 LETLDLSNNQISSISS--L-GSLTNLRELDLSGN 287 (394)
T ss_pred cceecccccccccccc--c-cccCccCEEeccCc
Confidence 6666666665544322 2 24456666666553
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.31 E-value=0.03 Score=41.14 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=26.3
Q ss_pred CCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCcc
Q 014524 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR 312 (423)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 312 (423)
+|.++.|++.+ +.+++.... +..+|.|+.|+++.++. . .....+..+.++-.|+..++.
T Consensus 76 f~t~t~lNl~~-neisdvPeE--~Aam~aLr~lNl~~N~l--~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 76 FPTATTLNLAN-NEISDVPEE--LAAMPALRSLNLRFNPL--N-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cchhhhhhcch-hhhhhchHH--HhhhHHhhhcccccCcc--c-cchHHHHHHHhHHHhcCCCCc
Confidence 45555665554 233333222 33355666666655541 1 112222334445555554443
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.92 E-value=0.019 Score=52.68 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=56.1
Q ss_pred CCCCceeccCCCcccchHHHHHH-hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHH-MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV 352 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 352 (423)
+.+|+.|.+..+.. .-... +..+++|+.|++++|.|++. ..+. .++.|+.|++.++. +++.. .+ ..++
T Consensus 94 ~~~l~~l~l~~n~i----~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~-~l~~L~~L~l~~N~-i~~~~--~~-~~l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYDNKI----EKIENLLSSLVNLQVLDLSFNKITKL--EGLS-TLTLLKELNLSGNL-ISDIS--GL-ESLK 162 (414)
T ss_pred ccceeeeeccccch----hhcccchhhhhcchheeccccccccc--cchh-hccchhhheeccCc-chhcc--CC-ccch
Confidence 45666676666532 11222 55677777777777766552 2222 33457777777765 33311 11 1256
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 353 NLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
+|+.++++++ .+++..... ...+.+++.+.+.++.
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 7777777774 333222211 2346677777777765
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.63 E-value=0.019 Score=42.14 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=12.9
Q ss_pred CcccEEEccCccCChhhHHHHHhcCCCccEEeecc
Q 014524 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSK 335 (423)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 335 (423)
+.++.|++.+|.+++...+ ++ .+|.|+.|+++.
T Consensus 77 ~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~ 109 (177)
T KOG4579|consen 77 PTATTLNLANNEISDVPEE-LA-AMPALRSLNLRF 109 (177)
T ss_pred chhhhhhcchhhhhhchHH-Hh-hhHHhhhccccc
Confidence 3344444444443333222 22 334444444443
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.99 E-value=0.038 Score=50.65 Aligned_cols=126 Identities=20% Similarity=0.172 Sum_probs=71.1
Q ss_pred CCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCc-chHHHHHHhCCC
Q 014524 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSS-TGLISVIRGHSG 276 (423)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~ 276 (423)
+..++.+.+..+.+.. ....+..+.+|+.|++.+. .+.. +......+++|+.|+++++ .++. .++. .++.
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----~l~~ 141 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLS----TLTL 141 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeecccc-chhh--cccchhhhhcchheecccc-ccccccchh----hccc
Confidence 3444444444443322 1223556788888888763 2221 2221234788999999874 3333 2222 2455
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
|+.|.+.++.. .....+..++.|+.++++++.+....... ...+.+++.+.+.++.
T Consensus 142 L~~L~l~~N~i----~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 142 LKELNLSGNLI----SDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhhheeccCcc----hhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 88888887753 22233334777888888888765533311 2366778888887755
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=91.54 E-value=0.4 Score=44.03 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=19.7
Q ss_pred cCCcccEEEccCccCC-hhhHHHHHhcCCCccEEeeccC
Q 014524 299 DLKNLEAITMDGARIS-DSCFQTISFNCKSLVEIGLSKC 336 (423)
Q Consensus 299 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~~L~~L~l~~~ 336 (423)
+.+.+..+++++|.+- -+.+..+....|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4555566666555422 2334445555555555555554
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.98 E-value=0.34 Score=24.65 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=14.7
Q ss_pred CcccEEEccCccCChhhHHHHHh
Q 014524 301 KNLEAITMDGARISDSCFQTISF 323 (423)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~ 323 (423)
++|+.|+|++|.+.+++...++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 35666777777676666666553
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.65 E-value=0.43 Score=24.26 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=9.8
Q ss_pred CCcEEecCCCCCCCHHHHHHHH
Q 014524 353 NLKTIDLTCCHSITDDAISAIA 374 (423)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~~~ 374 (423)
+|+.|+|++ +.+++++...++
T Consensus 3 ~L~~LdL~~-N~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSN-NKLGDEGARALA 23 (28)
T ss_pred ccCEEECCC-CCCCHHHHHHHH
Confidence 445555554 344444444444
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.12 E-value=0.15 Score=47.88 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccc
Q 014524 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTT 48 (423)
Q Consensus 4 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~~ 48 (423)
++.+..||.|+..+|+.+|+ .+++..+++||+.|+.+......+
T Consensus 105 ~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhccchh
Confidence 46788999999999999999 899999999999999986554433
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.38 E-value=0.64 Score=20.37 Aligned_cols=9 Identities=22% Similarity=0.302 Sum_probs=3.1
Q ss_pred ccEEEeccC
Q 014524 380 LVCLKIESC 388 (423)
Q Consensus 380 L~~L~l~~c 388 (423)
|+.|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 333333333
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.35 E-value=1.9 Score=39.88 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=43.9
Q ss_pred HHHHhCCCCceeccCCCcccchHHHHHHh-hcCCcccEEEccCc--cCCh-hhHHHHHhcCCCccEEeeccCCCCCh---
Q 014524 269 SVIRGHSGLLQLDAGHCFSELSTTLLHHM-RDLKNLEAITMDGA--RISD-SCFQTISFNCKSLVEIGLSKCLGVTN--- 341 (423)
Q Consensus 269 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~--- 341 (423)
.+....|.+..+.++++.. ..-+.+..+ ...|+|+.|+|++| .+.. ..+..+ ....|++|.+.+++-.+.
T Consensus 212 ~~~~n~p~i~sl~lsnNrL-~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 212 HIEENFPEILSLSLSNNRL-YHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HhhcCCcceeeeecccchh-hchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhh
Confidence 3344456666666666553 222233333 34677777777776 2222 122222 345667777766552211
Q ss_pred --HHHHHHHhcCCCCcEEe
Q 014524 342 --TGITQLVSGCVNLKTID 358 (423)
Q Consensus 342 --~~~~~~~~~~~~L~~L~ 358 (423)
+.+..+.+.+|+|..|+
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 22344555666666664
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=76.32 E-value=6.1 Score=32.88 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=33.5
Q ss_pred CCccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHh
Q 014524 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDS 43 (423)
Q Consensus 4 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~ 43 (423)
...+.+||.|++.+|+..+++.+|+.++++|--..+.+..
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 3478899999999999999999999999998666655543
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.80 E-value=1.4 Score=32.52 Aligned_cols=8 Identities=25% Similarity=0.434 Sum_probs=2.4
Q ss_pred CCCcEEec
Q 014524 199 LDLKSLDV 206 (423)
Q Consensus 199 ~~L~~L~l 206 (423)
++|+.+.+
T Consensus 12 ~~l~~i~~ 19 (129)
T PF13306_consen 12 SNLESITF 19 (129)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 33444443
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=69.23 E-value=4.9 Score=19.97 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.8
Q ss_pred cEEeecc
Q 014524 329 VEIGLSK 335 (423)
Q Consensus 329 ~~L~l~~ 335 (423)
++|.|..
T Consensus 3 KtL~L~~ 9 (26)
T PF07723_consen 3 KTLHLDS 9 (26)
T ss_pred eEEEeeE
Confidence 3444433
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.47 E-value=3.9 Score=19.22 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=5.2
Q ss_pred ccEEEeccC
Q 014524 380 LVCLKIESC 388 (423)
Q Consensus 380 L~~L~l~~c 388 (423)
|+.|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 555555555
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=61.12 E-value=23 Score=30.84 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=12.8
Q ss_pred hCCCccEEEeccCCCCCHHHHHHHHh
Q 014524 376 SCRGLVCLKIESCNMITEKGLYQLGS 401 (423)
Q Consensus 376 ~~~~L~~L~l~~c~~i~~~~~~~l~~ 401 (423)
.++.|+.|++.++. ||..++.++..
T Consensus 253 ~n~sl~slnvesnF-Itg~gi~a~~~ 277 (353)
T KOG3735|consen 253 ENKSLTSLNVESNF-ITGLGIMALLR 277 (353)
T ss_pred hcchhhheeccccc-cccHHHHHHHH
Confidence 34555555555544 55555554443
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.87 E-value=12 Score=18.26 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=9.6
Q ss_pred CCCCEEeccCCCCCCC
Q 014524 404 LRLEEIDLTDCNGVND 419 (423)
Q Consensus 404 ~~L~~L~l~~c~~i~~ 419 (423)
++|+.|++++ ++++.
T Consensus 2 ~~L~~L~L~~-N~l~~ 16 (26)
T smart00370 2 PNLRELDLSN-NQLSS 16 (26)
T ss_pred CCCCEEECCC-CcCCc
Confidence 5677777777 55543
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.87 E-value=12 Score=18.26 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=9.6
Q ss_pred CCCCEEeccCCCCCCC
Q 014524 404 LRLEEIDLTDCNGVND 419 (423)
Q Consensus 404 ~~L~~L~l~~c~~i~~ 419 (423)
++|+.|++++ ++++.
T Consensus 2 ~~L~~L~L~~-N~l~~ 16 (26)
T smart00369 2 PNLRELDLSN-NQLSS 16 (26)
T ss_pred CCCCEEECCC-CcCCc
Confidence 5677777777 55543
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=46.97 E-value=20 Score=17.86 Aligned_cols=15 Identities=40% Similarity=0.694 Sum_probs=10.2
Q ss_pred CCCCEEeccCCCCCCC
Q 014524 404 LRLEEIDLTDCNGVND 419 (423)
Q Consensus 404 ~~L~~L~l~~c~~i~~ 419 (423)
.+|+.|++++ |+|+.
T Consensus 2 ~~L~~L~L~~-NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQ-NKIKK 16 (26)
T ss_pred CccCEEECCC-Cccce
Confidence 4677777777 66643
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=44.98 E-value=55 Score=28.66 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=21.3
Q ss_pred hHHHHHhcCCCCceEecCCCcccCcchHHHHHHhC
Q 014524 240 GLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGH 274 (423)
Q Consensus 240 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 274 (423)
.++.+..+-+.++.+++.+...++...+..+...+
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal 223 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEAL 223 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHH
Confidence 44555555577777777776666665555554433
No 97
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=41.41 E-value=7 Score=36.69 Aligned_cols=13 Identities=31% Similarity=0.156 Sum_probs=7.3
Q ss_pred CCCCcEEeccCcc
Q 014524 198 CLDLKSLDVSYLK 210 (423)
Q Consensus 198 ~~~L~~L~l~~~~ 210 (423)
+..|+.++++.|+
T Consensus 120 L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 120 LEALTFLDLSSNQ 132 (722)
T ss_pred hhHHHHhhhccch
Confidence 4455666666553
No 98
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=34.36 E-value=11 Score=35.47 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=60.9
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcE
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (423)
|+.|-++++.. + -....++..++|..|+.+.|++....- .+. ...+|+.|.+..+. +.+ -.+++. .+ .|..
T Consensus 145 Lkvli~sNNkl--~-~lp~~ig~~~tl~~ld~s~nei~slps-ql~-~l~slr~l~vrRn~-l~~-lp~El~-~L-pLi~ 215 (722)
T KOG0532|consen 145 LKVLIVSNNKL--T-SLPEEIGLLPTLAHLDVSKNEIQSLPS-QLG-YLTSLRDLNVRRNH-LED-LPEELC-SL-PLIR 215 (722)
T ss_pred ceeEEEecCcc--c-cCCcccccchhHHHhhhhhhhhhhchH-Hhh-hHHHHHHHHHhhhh-hhh-CCHHHh-CC-ceee
Confidence 66666665542 1 112223345566666666665332111 111 33455555554433 111 112222 23 4788
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHh-cCCCCCEEeccCC
Q 014524 357 IDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGS-FCLRLEEIDLTDC 414 (423)
Q Consensus 357 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~-~~~~L~~L~l~~c 414 (423)
|+++. ++++..-+ -...+..|+.|-+.+++ ++.-...-..+ ..+--++|+..-|
T Consensus 216 lDfSc-Nkis~iPv--~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 216 LDFSC-NKISYLPV--DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeccc-Cceeecch--hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 88885 56553222 22347788888888888 54432221111 2344566666665
No 99
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=33.78 E-value=27 Score=30.57 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=32.7
Q ss_pred CccccchHHHHHHHHHhcCCc-------chhhHHHHHHHHHHHHHhhh
Q 014524 5 SALDVLTEDLLVRVREKIGDE-------LDSKTWRLVCKEFSRVDSVT 45 (423)
Q Consensus 5 ~~~~~LP~eil~~If~~L~~~-------~d~~~~~~vcr~w~~~~~~~ 45 (423)
+.|..||+|.+..|....... +...+++-||+.|+......
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 478899999999999988632 35677889999999975443
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=24.85 E-value=51 Score=16.46 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=7.2
Q ss_pred CCCEEeccCCCCCC
Q 014524 405 RLEEIDLTDCNGVN 418 (423)
Q Consensus 405 ~L~~L~l~~c~~i~ 418 (423)
+|+.|++++ |+++
T Consensus 3 ~L~~L~vs~-N~Lt 15 (26)
T smart00364 3 SLKELNVSN-NQLT 15 (26)
T ss_pred ccceeecCC-Cccc
Confidence 455666665 5543
No 101
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.55 E-value=54 Score=26.03 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.5
Q ss_pred CCCCCccccchHHHHHHHHHhcC
Q 014524 1 MPGSSALDVLTEDLLVRVREKIG 23 (423)
Q Consensus 1 m~~~~~~~~LP~eil~~If~~L~ 23 (423)
||..+.|+.||+||...+-+.|-
T Consensus 1 m~r~SkId~LP~eir~~l~~~L~ 23 (180)
T PF11985_consen 1 MGRRSKIDLLPPEIREWLDQMLR 23 (180)
T ss_pred CCCCchHhhCCHHHHHHHHHHHH
Confidence 88899999999999888888775
No 102
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=23.22 E-value=46 Score=19.39 Aligned_cols=29 Identities=3% Similarity=0.063 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 014524 12 EDLLVRVREKIGDELDSKTWRLVCKEFSRV 41 (423)
Q Consensus 12 ~eil~~If~~L~~~~d~~~~~~vcr~w~~~ 41 (423)
.++...|++.+. .-.-..+.++||.+++.
T Consensus 6 ~~v~~lI~~~l~-~i~P~t~l~lSr~~yk~ 34 (46)
T PF12586_consen 6 GPVHDLILDELS-RIRPLTYLRLSRYHYKR 34 (46)
T ss_pred HhHHHHHHHHHH-hcCChhheeeeHHHhhh
Confidence 578888888887 44446667778877754
Done!