Query 014524
Match_columns 423
No_of_seqs 352 out of 2186
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 13:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2.8E-40 9.5E-45 315.5 29.3 396 3-415 2-517 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.8E-39 6.1E-44 309.7 30.7 400 9-422 15-530 (592)
3 2p1m_B Transport inhibitor res 100.0 5.4E-31 1.8E-35 251.4 28.1 346 54-413 119-540 (594)
4 2ast_B S-phase kinase-associat 100.0 8.8E-30 3E-34 225.2 20.4 290 4-381 6-299 (336)
5 3ogk_B Coronatine-insensitive 100.0 8.4E-29 2.9E-33 236.0 27.6 344 57-413 129-547 (592)
6 1z7x_W Ribonuclease inhibitor; 100.0 5.3E-27 1.8E-31 216.7 31.1 345 60-419 23-412 (461)
7 1z7x_W Ribonuclease inhibitor; 100.0 4.1E-25 1.4E-29 204.1 33.2 346 56-414 47-437 (461)
8 4fmz_A Internalin; leucine ric 99.9 3.3E-22 1.1E-26 177.4 19.7 305 63-418 42-346 (347)
9 2ast_B S-phase kinase-associat 99.9 5.5E-21 1.9E-25 168.8 18.5 254 149-419 49-307 (336)
10 3v47_A TOLL-like receptor 5B a 99.9 2E-23 6.8E-28 192.4 0.0 333 65-418 30-408 (455)
11 4fmz_A Internalin; leucine ric 99.9 4.4E-20 1.5E-24 163.7 21.1 285 61-392 62-346 (347)
12 2ca6_A RAN GTPase-activating p 99.8 7.6E-19 2.6E-23 157.9 25.3 271 135-413 16-339 (386)
13 2ca6_A RAN GTPase-activating p 99.8 2.9E-19 9.8E-24 160.7 22.4 260 120-387 30-339 (386)
14 3t6q_A CD180 antigen; protein- 99.8 7.8E-23 2.7E-27 195.3 -4.0 159 198-362 300-459 (606)
15 1o6v_A Internalin A; bacterial 99.8 2.5E-19 8.4E-24 165.1 19.2 301 61-413 64-384 (466)
16 3rgz_A Protein brassinosteroid 99.8 2.2E-22 7.4E-27 196.6 -2.7 281 120-417 221-526 (768)
17 2z81_A CD282 antigen, TOLL-lik 99.8 1.5E-20 5.1E-25 177.4 8.1 181 65-259 26-206 (549)
18 1o6v_A Internalin A; bacterial 99.8 5.5E-19 1.9E-23 162.8 18.2 252 64-361 45-296 (466)
19 3t6q_A CD180 antigen; protein- 99.8 5.7E-22 1.9E-26 189.4 -2.3 209 198-418 277-489 (606)
20 3rgz_A Protein brassinosteroid 99.8 4.3E-22 1.5E-26 194.5 -4.5 303 93-414 220-548 (768)
21 2id5_A Lingo-1, leucine rich r 99.8 4.6E-22 1.6E-26 184.2 -4.3 228 120-361 78-305 (477)
22 3o6n_A APL1; leucine-rich repe 99.8 1.8E-20 6.1E-25 168.8 3.7 129 94-232 67-195 (390)
23 3v47_A TOLL-like receptor 5B a 99.8 7.1E-21 2.4E-25 175.3 0.7 309 94-419 28-385 (455)
24 3vq2_A TLR4, TOLL-like recepto 99.8 7.9E-22 2.7E-26 188.4 -6.0 61 94-157 102-163 (606)
25 2id5_A Lingo-1, leucine rich r 99.8 3.2E-21 1.1E-25 178.6 -3.5 301 94-414 30-330 (477)
26 3vq2_A TLR4, TOLL-like recepto 99.8 2.3E-21 8E-26 185.1 -4.9 113 60-183 51-163 (606)
27 2z63_A TOLL-like receptor 4, v 99.8 1.1E-21 3.9E-26 186.1 -8.0 112 61-183 48-159 (570)
28 2z7x_B TOLL-like receptor 1, v 99.8 2.5E-19 8.5E-24 167.8 7.4 106 60-183 40-148 (520)
29 3goz_A Leucine-rich repeat-con 99.8 1.4E-17 4.8E-22 148.1 18.3 247 114-368 14-299 (362)
30 2z63_A TOLL-like receptor 4, v 99.8 2.8E-21 9.4E-26 183.4 -6.7 88 60-157 71-159 (570)
31 3o6n_A APL1; leucine-rich repe 99.8 3.5E-19 1.2E-23 160.4 6.7 306 58-407 62-367 (390)
32 3goz_A Leucine-rich repeat-con 99.8 1.8E-17 6.2E-22 147.4 17.3 259 127-394 3-299 (362)
33 3oja_B Anopheles plasmodium-re 99.8 8.8E-20 3E-24 173.2 2.3 282 94-413 73-354 (597)
34 2z81_A CD282 antigen, TOLL-lik 99.8 7.7E-19 2.6E-23 165.7 8.4 183 94-286 24-207 (549)
35 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-19 3.7E-24 175.9 1.2 330 65-418 25-394 (680)
36 2z7x_B TOLL-like receptor 1, v 99.7 1.3E-18 4.5E-23 162.9 8.3 128 65-211 21-150 (520)
37 4eco_A Uncharacterized protein 99.7 3.9E-20 1.3E-24 176.6 -4.2 329 60-413 201-596 (636)
38 1ziw_A TOLL-like receptor 3; i 99.7 1.6E-19 5.6E-24 174.7 -0.1 213 197-418 403-623 (680)
39 3oja_B Anopheles plasmodium-re 99.7 1.4E-18 4.7E-23 165.0 6.1 303 58-404 68-370 (597)
40 3j0a_A TOLL-like receptor 5; m 99.7 8.4E-21 2.9E-25 187.3 -9.7 322 64-413 23-390 (844)
41 4ecn_A Leucine-rich repeat pro 99.7 9.1E-19 3.1E-23 170.3 4.4 163 60-233 443-629 (876)
42 4eco_A Uncharacterized protein 99.7 1.8E-19 6.3E-24 171.9 -0.5 325 63-418 247-633 (636)
43 3bz5_A Internalin-J, INLJ; leu 99.7 3.6E-18 1.2E-22 156.1 7.1 298 62-419 39-353 (457)
44 4ecn_A Leucine-rich repeat pro 99.7 9.7E-19 3.3E-23 170.1 2.3 323 63-418 489-840 (876)
45 3j0a_A TOLL-like receptor 5; m 99.7 1.7E-19 5.7E-24 178.1 -3.1 113 61-183 44-158 (844)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 5.4E-19 1.9E-23 166.9 -0.9 134 274-419 352-487 (562)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.5E-18 5E-23 163.9 1.1 154 247-414 351-507 (562)
48 1xku_A Decorin; proteoglycan, 99.7 9.6E-19 3.3E-23 153.8 -0.9 270 122-413 52-328 (330)
49 2z80_A TOLL-like receptor 2, v 99.7 1.1E-17 3.9E-22 148.3 3.4 111 274-389 197-312 (353)
50 2ft3_A Biglycan; proteoglycan, 99.7 7.6E-19 2.6E-23 154.5 -5.3 270 122-414 54-330 (332)
51 3bz5_A Internalin-J, INLJ; leu 99.7 1.2E-16 4.1E-21 146.0 9.1 277 94-419 40-332 (457)
52 2z80_A TOLL-like receptor 2, v 99.7 1E-17 3.6E-22 148.6 1.6 212 197-418 98-314 (353)
53 1xku_A Decorin; proteoglycan, 99.6 3.9E-17 1.3E-21 143.5 1.6 290 66-388 32-329 (330)
54 3o53_A Protein LRIM1, AGAP0063 99.6 3.2E-17 1.1E-21 143.0 -0.1 35 121-156 33-67 (317)
55 3zyj_A Leucine-rich repeat-con 99.6 5.7E-17 1.9E-21 148.2 0.5 156 197-362 134-289 (440)
56 3zyi_A Leucine-rich repeat-con 99.6 6.8E-17 2.3E-21 148.2 1.0 227 122-363 75-301 (452)
57 1ogq_A PGIP-2, polygalacturona 99.6 2E-18 6.9E-23 150.1 -9.2 132 197-337 123-255 (313)
58 1wwl_A Monocyte differentiatio 99.6 2.1E-17 7.3E-22 143.7 -4.3 209 197-421 93-312 (312)
59 2z66_A Variable lymphocyte rec 99.6 8.6E-18 2.9E-22 146.1 -6.9 203 122-336 28-233 (306)
60 2ft3_A Biglycan; proteoglycan, 99.6 2.2E-17 7.5E-22 145.2 -4.9 291 66-389 34-331 (332)
61 1ogq_A PGIP-2, polygalacturona 99.6 4.1E-18 1.4E-22 148.2 -9.4 252 96-364 50-303 (313)
62 1ozn_A Reticulon 4 receptor; N 99.6 2.4E-16 8.3E-21 135.4 0.7 206 172-389 31-236 (285)
63 3e4g_A ATP synthase subunit S, 99.6 5.7E-15 2E-19 113.5 7.8 105 302-408 62-171 (176)
64 4g8a_A TOLL-like receptor 4; l 99.6 3.1E-17 1.1E-21 157.7 -6.0 86 94-183 98-183 (635)
65 3o53_A Protein LRIM1, AGAP0063 99.6 5.8E-16 2E-20 135.0 2.1 241 92-360 30-270 (317)
66 3e4g_A ATP synthase subunit S, 99.6 3E-15 1E-19 115.0 5.4 93 326-421 61-156 (176)
67 3zyi_A Leucine-rich repeat-con 99.5 2.4E-16 8.3E-21 144.6 -1.6 227 147-389 75-301 (452)
68 2z66_A Variable lymphocyte rec 99.5 5.6E-17 1.9E-21 140.9 -6.1 229 146-389 27-259 (306)
69 1ozn_A Reticulon 4 receptor; N 99.5 1.4E-15 4.9E-20 130.5 2.8 64 297-363 173-236 (285)
70 3zyj_A Leucine-rich repeat-con 99.5 2.1E-16 7.2E-21 144.5 -2.6 204 172-389 87-290 (440)
71 3un9_A NLR family member X1; l 99.5 1.8E-13 6.2E-18 121.1 15.9 173 197-375 70-261 (372)
72 1wwl_A Monocyte differentiatio 99.5 8E-17 2.7E-21 140.1 -5.9 181 197-392 119-309 (312)
73 3oja_A Leucine-rich immune mol 99.5 1.4E-15 4.7E-20 140.3 1.0 123 120-258 56-178 (487)
74 4g8a_A TOLL-like receptor 4; l 99.5 2.4E-16 8.1E-21 151.5 -6.1 111 297-413 465-576 (635)
75 3oja_A Leucine-rich immune mol 99.5 1.7E-15 6E-20 139.6 -1.6 35 198-232 143-178 (487)
76 1h6u_A Internalin H; cell adhe 99.5 1.6E-13 5.5E-18 118.8 9.3 189 172-389 40-228 (308)
77 3un9_A NLR family member X1; l 99.5 1.6E-12 5.5E-17 115.1 15.6 182 222-410 71-274 (372)
78 4fcg_A Uncharacterized protein 99.4 2.6E-15 8.9E-20 131.3 -2.7 36 350-387 275-310 (328)
79 4fcg_A Uncharacterized protein 99.4 5.8E-15 2E-19 129.1 -0.9 35 198-233 182-216 (328)
80 4glp_A Monocyte differentiatio 99.4 1.1E-14 3.6E-19 126.6 0.7 136 274-421 168-310 (310)
81 4glp_A Monocyte differentiatio 99.4 8.4E-15 2.9E-19 127.3 -0.2 85 298-392 221-307 (310)
82 3g06_A SSPH2 (leucine-rich rep 99.4 6.5E-13 2.2E-17 125.1 11.8 266 65-400 40-305 (622)
83 1jl5_A Outer protein YOPM; leu 99.4 4.8E-13 1.7E-17 122.1 10.1 77 122-211 131-207 (454)
84 1h6u_A Internalin H; cell adhe 99.4 8.9E-13 3E-17 114.2 11.1 189 145-362 39-227 (308)
85 1jl5_A Outer protein YOPM; leu 99.4 2.6E-13 8.9E-18 123.9 7.7 284 65-419 71-371 (454)
86 3g06_A SSPH2 (leucine-rich rep 99.4 5.7E-13 1.9E-17 125.5 9.6 258 96-418 40-297 (622)
87 2z62_A TOLL-like receptor 4, v 99.4 2E-14 6.9E-19 122.7 -2.9 203 173-389 28-235 (276)
88 2z62_A TOLL-like receptor 4, v 99.3 4.2E-14 1.4E-18 120.8 -2.4 204 122-363 28-235 (276)
89 2ra8_A Uncharacterized protein 99.3 4.3E-11 1.5E-15 105.0 13.9 158 244-413 167-339 (362)
90 4ezg_A Putative uncharacterize 99.3 1.8E-12 6.3E-17 104.4 4.4 111 298-419 85-195 (197)
91 2xwt_C Thyrotropin receptor; s 99.3 4.2E-14 1.4E-18 118.0 -6.6 129 274-416 104-238 (239)
92 4ezg_A Putative uncharacterize 99.3 6E-12 2.1E-16 101.3 6.0 35 198-232 87-121 (197)
93 1h6t_A Internalin B; cell adhe 99.2 9.7E-12 3.3E-16 106.6 7.6 168 197-389 44-211 (291)
94 2o6q_A Variable lymphocyte rec 99.2 6.8E-13 2.3E-17 112.7 0.1 58 173-232 37-94 (270)
95 2o6q_A Variable lymphocyte rec 99.2 9.7E-13 3.3E-17 111.8 0.5 40 297-337 177-216 (270)
96 2xwt_C Thyrotropin receptor; s 99.2 1.8E-13 6.1E-18 114.1 -4.4 106 123-233 32-140 (239)
97 3rfs_A Internalin B, repeat mo 99.2 2.4E-12 8.2E-17 109.4 2.1 178 197-389 39-216 (272)
98 3rfs_A Internalin B, repeat mo 99.2 5.6E-12 1.9E-16 107.1 3.5 33 121-156 40-72 (272)
99 1h6t_A Internalin B; cell adhe 99.2 6.3E-11 2.2E-15 101.5 9.9 166 172-362 45-210 (291)
100 1m9s_A Internalin B; cell inva 99.2 2E-11 6.7E-16 115.0 6.3 170 197-392 41-210 (605)
101 1p9a_G Platelet glycoprotein I 99.2 2.4E-12 8.1E-17 110.3 -0.3 201 143-363 6-206 (290)
102 1m9s_A Internalin B; cell inva 99.1 1.6E-10 5.4E-15 108.8 11.1 168 145-337 41-208 (605)
103 1io0_A Tropomodulin; LRR prote 99.1 7.9E-10 2.7E-14 87.6 12.7 125 267-395 28-167 (185)
104 2ra8_A Uncharacterized protein 99.1 8.1E-11 2.8E-15 103.2 7.2 148 266-421 163-323 (362)
105 1p9a_G Platelet glycoprotein I 99.1 1.3E-11 4.3E-16 105.8 0.6 103 122-232 31-133 (290)
106 2je0_A Acidic leucine-rich nuc 99.1 9.5E-11 3.2E-15 89.7 4.5 108 298-412 39-148 (149)
107 3m19_A Variable lymphocyte rec 99.0 5E-11 1.7E-15 100.0 1.8 84 274-362 106-189 (251)
108 1io0_A Tropomodulin; LRR prote 99.0 9.5E-09 3.3E-13 81.3 14.9 126 291-420 26-166 (185)
109 3m19_A Variable lymphocyte rec 99.0 7.2E-11 2.5E-15 99.0 1.3 156 147-337 35-190 (251)
110 1xeu_A Internalin C; cellular 99.0 3E-10 1E-14 95.7 4.8 58 297-361 124-181 (263)
111 2je0_A Acidic leucine-rich nuc 99.0 2.5E-10 8.5E-15 87.3 3.7 58 95-156 16-73 (149)
112 2ell_A Acidic leucine-rich nuc 98.9 1.5E-10 5E-15 90.6 0.8 111 297-415 45-158 (168)
113 3sb4_A Hypothetical leucine ri 98.9 1.7E-11 5.7E-16 107.3 -5.6 287 95-411 24-328 (329)
114 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 6E-10 2E-14 67.6 3.0 42 3-45 5-46 (53)
115 2ell_A Acidic leucine-rich nuc 98.8 7.6E-10 2.6E-14 86.5 2.2 131 199-337 24-158 (168)
116 4ay9_X Follicle-stimulating ho 98.8 2.3E-11 7.9E-16 107.4 -7.3 225 123-361 31-255 (350)
117 1xeu_A Internalin C; cellular 98.8 5.8E-09 2E-13 87.8 7.1 57 274-337 127-183 (263)
118 1dce_A Protein (RAB geranylger 98.8 3.6E-10 1.2E-14 105.7 -0.5 102 248-358 462-566 (567)
119 1dce_A Protein (RAB geranylger 98.8 3.3E-10 1.1E-14 106.0 -2.3 123 276-411 442-567 (567)
120 2o6s_A Variable lymphocyte rec 98.8 9.2E-10 3.2E-14 89.4 -0.0 34 199-232 28-61 (208)
121 3sb4_A Hypothetical leucine ri 98.7 6.6E-10 2.3E-14 97.1 -1.1 111 299-419 200-311 (329)
122 2o6s_A Variable lymphocyte rec 98.7 5.9E-10 2E-14 90.5 -2.0 36 197-232 98-133 (208)
123 2v9t_B SLIT homolog 2 protein 98.7 4.6E-09 1.6E-13 85.9 1.9 17 297-313 124-140 (220)
124 2xot_A Amphoterin-induced prot 98.7 4E-09 1.4E-13 93.4 1.6 109 173-286 39-147 (361)
125 2v9t_B SLIT homolog 2 protein 98.6 5.9E-09 2E-13 85.2 1.7 61 197-259 102-162 (220)
126 3e6j_A Variable lymphocyte rec 98.6 2.6E-09 9.1E-14 87.9 -0.4 132 248-389 39-170 (229)
127 2xot_A Amphoterin-induced prot 98.6 4.5E-09 1.5E-13 93.1 0.8 160 147-314 39-202 (361)
128 1a9n_A U2A', U2A'; complex (nu 98.6 2E-08 6.7E-13 79.0 4.2 62 274-337 87-151 (176)
129 3cvr_A Invasion plasmid antige 98.6 3.6E-08 1.2E-12 91.9 6.5 134 121-286 58-191 (571)
130 3e6j_A Variable lymphocyte rec 98.6 1.2E-08 4.2E-13 83.9 2.9 34 199-232 40-73 (229)
131 1a9n_A U2A', U2A'; complex (nu 98.6 1.7E-08 5.8E-13 79.4 2.8 90 297-389 60-151 (176)
132 2v70_A SLIT-2, SLIT homolog 2 98.6 5.8E-09 2E-13 85.3 0.1 36 197-232 55-90 (220)
133 3cvr_A Invasion plasmid antige 98.6 3.3E-08 1.1E-12 92.1 4.8 189 147-372 59-249 (571)
134 1ds9_A Outer arm dynein; leuci 98.6 4.7E-09 1.6E-13 84.4 -1.3 15 197-211 46-60 (198)
135 1ds9_A Outer arm dynein; leuci 98.6 9.9E-09 3.4E-13 82.5 0.5 124 274-410 47-180 (198)
136 2v70_A SLIT-2, SLIT homolog 2 98.5 1.8E-08 6.3E-13 82.3 1.9 34 199-232 32-66 (220)
137 4ay9_X Follicle-stimulating ho 98.5 6E-10 2E-14 98.3 -8.5 224 173-413 30-255 (350)
138 1pgv_A TMD-1, tropomodulin TMD 98.4 5E-06 1.7E-10 65.2 12.7 88 300-388 69-167 (197)
139 1pgv_A TMD-1, tropomodulin TMD 98.4 8.6E-06 2.9E-10 63.8 13.8 120 292-413 32-166 (197)
140 4fdw_A Leucine rich hypothetic 98.2 2E-08 6.9E-13 89.7 -5.6 240 121-389 112-356 (401)
141 2wfh_A SLIT homolog 2 protein 98.1 9.8E-07 3.3E-11 70.3 1.9 12 248-259 125-136 (193)
142 2wfh_A SLIT homolog 2 protein 98.1 1.7E-06 5.8E-11 68.8 3.1 32 200-232 32-63 (193)
143 2o6r_A Variable lymphocyte rec 98.1 1.5E-06 5.1E-11 68.2 2.5 34 199-232 28-61 (177)
144 1w8a_A SLIT protein; signaling 98.0 5.3E-07 1.8E-11 71.8 -0.8 84 274-362 53-136 (192)
145 2o6r_A Variable lymphocyte rec 98.0 1.2E-06 4E-11 68.8 0.9 34 122-156 28-61 (177)
146 3l2o_B F-box only protein 4; s 98.0 1.5E-06 5E-11 71.5 1.3 42 5-47 3-44 (312)
147 1w8a_A SLIT protein; signaling 98.0 1E-06 3.5E-11 70.1 0.1 33 123-156 30-63 (192)
148 4fs7_A Uncharacterized protein 98.0 4.5E-08 1.5E-12 87.8 -8.8 11 350-360 341-351 (394)
149 4b8c_D Glucose-repressible alc 97.9 5.3E-07 1.8E-11 87.2 -4.0 159 199-370 173-333 (727)
150 2e31_A FBS1, F-box only protei 97.8 4.3E-06 1.5E-10 69.7 1.6 40 5-45 49-89 (297)
151 4b8c_D Glucose-repressible alc 97.8 5.7E-06 1.9E-10 80.0 2.4 114 218-343 219-332 (727)
152 4fdw_A Leucine rich hypothetic 97.7 2.8E-06 9.5E-11 75.9 -1.2 237 97-361 136-379 (401)
153 4gt6_A Cell surface protein; l 97.7 2.9E-06 9.8E-11 76.0 -2.0 123 273-413 263-387 (394)
154 4fs7_A Uncharacterized protein 97.6 6.9E-07 2.4E-11 80.1 -7.8 104 297-413 272-375 (394)
155 3v7d_B Cell division control p 97.4 3.9E-05 1.3E-09 70.3 2.1 40 4-44 12-51 (464)
156 4gt6_A Cell surface protein; l 97.4 6.5E-06 2.2E-10 73.7 -3.7 107 294-413 258-366 (394)
157 3g39_A Variable lymphocyte rec 97.4 3.7E-05 1.3E-09 59.6 0.8 63 297-362 50-112 (170)
158 2r9u_A Variable lymphocyte rec 97.4 3.9E-05 1.3E-09 59.7 0.8 63 297-362 53-115 (174)
159 3rw6_A Nuclear RNA export fact 97.3 0.00058 2E-08 56.6 7.7 12 347-358 246-257 (267)
160 1p22_A F-BOX/WD-repeat protein 97.3 7E-05 2.4E-09 68.0 2.4 42 3-45 7-52 (435)
161 3rw6_A Nuclear RNA export fact 97.3 0.00051 1.7E-08 57.0 6.8 83 299-385 168-258 (267)
162 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00013 4.6E-09 66.3 2.1 40 3-43 15-54 (445)
163 3g39_A Variable lymphocyte rec 97.1 8.6E-05 2.9E-09 57.5 0.7 36 197-232 76-111 (170)
164 2r9u_A Variable lymphocyte rec 97.1 9.8E-05 3.3E-09 57.4 0.7 36 197-232 79-114 (174)
165 2ifg_A High affinity nerve gro 96.5 0.00086 2.9E-08 58.7 1.8 62 120-183 29-90 (347)
166 2ifg_A High affinity nerve gro 96.3 0.0014 4.8E-08 57.3 1.9 62 196-259 28-90 (347)
167 4h09_A Hypothetical leucine ri 91.6 0.024 8.3E-07 50.1 -1.0 150 121-284 193-342 (379)
168 4h09_A Hypothetical leucine ri 88.5 0.11 3.9E-06 45.7 0.8 129 220-361 214-342 (379)
169 3rfe_A Platelet glycoprotein I 71.0 2.3 7.9E-05 30.5 2.3 33 200-232 32-64 (130)
170 3rfe_A Platelet glycoprotein I 61.5 3.7 0.00013 29.5 1.8 13 299-311 53-65 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.8e-40 Score=315.51 Aligned_cols=396 Identities=20% Similarity=0.317 Sum_probs=209.5
Q ss_pred CCCccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccccccch--H--------------------------
Q 014524 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLR--V-------------------------- 54 (423)
Q Consensus 3 ~~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~~~~~~~--~-------------------------- 54 (423)
..+.|+.||+|++.+||+||+..+|+.++++|||+|+++....+..+.... .
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 357899999999999999999889999999999999998544332221111 0
Q ss_pred -------------HHHHHHhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhC
Q 014524 55 -------------EFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARAC 121 (423)
Q Consensus 55 -------------~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 121 (423)
..+..+...+++|++|+++++. +++..+..+ ...+++|++|++.+|..++...+..+...+
T Consensus 82 ~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l-----~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 155 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELI-----AKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHH-----HHHCTTCCEEEEESCEEEEHHHHHHHHHHC
T ss_pred cccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHH-----HHhCCCCcEEeCCCcCCCCHHHHHHHHHhC
Confidence 1123333444555555555432 444444444 223556666666665545555555555556
Q ss_pred CCccEEEccCcCCCChHHHHHhh----cCCCCcEEecCCCC-CCChHHHHHHHHhCccccccccccccccchhhHHHHHh
Q 014524 122 PLLESVDLSYCCGFGDREAAALS----FASGLKEVKLDKCL-NVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCK 196 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 196 (423)
++|++|+++++. +++.+...+. .+++|++|+++++. .++...+..+...+++|++|++.++..+.. +..+..
T Consensus 156 ~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~ 232 (594)
T 2p1m_B 156 RNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQ 232 (594)
T ss_dssp TTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHH
T ss_pred CCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHh
Confidence 666666666543 2222211121 35567777776653 355666777777788888888887632221 222223
Q ss_pred cC------------------------------------------------------CCCcEEeccCcccChhHHHHh-hc
Q 014524 197 KC------------------------------------------------------LDLKSLDVSYLKLTNDSFCSI-AT 221 (423)
Q Consensus 197 ~~------------------------------------------------------~~L~~L~l~~~~~~~~~~~~~-~~ 221 (423)
.+ ++|++|++++|.+.+..+..+ ..
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~ 312 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhc
Confidence 33 344444444444433333332 23
Q ss_pred cCCccEEEecCCCCCCchhHHHHHhcCCCCceEec--------CCCcccCcchHHHHHHhCCCCceeccCCCcccchHHH
Q 014524 222 LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFV--------SRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTL 293 (423)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 293 (423)
+++|++|++.++ +.+..+..+...+++|++|++ ..+..+++.++..+...+++|+.|.+..+. +++..
T Consensus 313 ~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~--l~~~~ 388 (594)
T 2p1m_B 313 CPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ--MTNAA 388 (594)
T ss_dssp CTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC--CCHHH
T ss_pred CCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC--cCHHH
Confidence 444555544443 233334444444455555555 223344444444444445555555332222 44444
Q ss_pred HHHhh-cCCcccEEEcc--C----ccCC----hhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCC
Q 014524 294 LHHMR-DLKNLEAITMD--G----ARIS----DSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (423)
Q Consensus 294 ~~~~~-~~~~L~~L~l~--~----~~~~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (423)
...+. .+++|+.|++. + +.++ +.++..+...+++|++|++++ .+++.++..+...+++|+.|++++|
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC
Confidence 44433 35555555555 2 2344 344444444555566666544 3555555555545666666666654
Q ss_pred CCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 014524 363 HSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCN 415 (423)
Q Consensus 363 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~ 415 (423)
.+++.++..+...+++|+.|++++|. +++.++..+...+++|+.|++++|.
T Consensus 467 -~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 467 -GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp -CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred -CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 35666666655556666666666666 4666665555556666666666653
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.8e-39 Score=309.69 Aligned_cols=400 Identities=21% Similarity=0.331 Sum_probs=267.3
Q ss_pred cchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccccccch--HHHHHHHhhcCCCcceEeecCCCC---------
Q 014524 9 VLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLR--VEFLFILLDKYPYIKTLDLSVCPR--------- 77 (423)
Q Consensus 9 ~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~--------- 77 (423)
+||+|++.+||+||+..+|+.++++|||+|+.+....+..+.... ......+.++++++++|++++|+.
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 94 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPE 94 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCT
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccc
Confidence 799999999999993399999999999999999655544333221 122344455555555555544332
Q ss_pred -----------------------------CChhHHHHHhhhcccccCCC-ccEEEeccCCCCchhHHHHHHHhCCCccEE
Q 014524 78 -----------------------------VNDGTVSFLLSQLSLSWTRS-LKSLILSRSTGLRYRGLEMLARACPLLESV 127 (423)
Q Consensus 78 -----------------------------~~~~~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 127 (423)
+++..+..+ ...+++ |++|++.+|..++...+..+...+++|++|
T Consensus 95 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l-----~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 95 NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL-----AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH-----HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH-----HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 333333333 111223 666666655545555555555566666666
Q ss_pred EccCcCCCChHH---H-HHhhcCCCCcEEecCCCCC--CChHHHHHHHHhCccccccccccccccch-------------
Q 014524 128 DLSYCCGFGDRE---A-AALSFASGLKEVKLDKCLN--VTDVGLAKIAVRCVNLERLSLKWCMEISD------------- 188 (423)
Q Consensus 128 ~l~~~~~~~~~~---~-~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------- 188 (423)
+++++. +.+.+ + .....+++|++|+++++.- ++...+..+...+++|++|++.++. +..
T Consensus 170 ~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~ 247 (592)
T 3ogk_B 170 LMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEE 247 (592)
T ss_dssp ECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCE
T ss_pred ECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHh
Confidence 666542 22211 1 1223466666666655311 2345566666667777777777652 211
Q ss_pred -----------------------------------hhHHHHHhcCCCCcEEeccCcccChhHHHH-hhccCCccEEEecC
Q 014524 189 -----------------------------------LGIDLLCKKCLDLKSLDVSYLKLTNDSFCS-IATLAKLESLVMVG 232 (423)
Q Consensus 189 -----------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~ 232 (423)
..+..+...+++|++|++++|.+++..+.. +..+++|++|++.
T Consensus 248 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR- 326 (592)
T ss_dssp EEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-
T ss_pred hcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-
Confidence 111122234556666666666655555533 3457777777776
Q ss_pred CCCCCchhHHHHHhcCCCCceEecCC----------CcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhc-CC
Q 014524 233 CPCVDDTGLRFLESGCPLLKTIFVSR----------CKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD-LK 301 (423)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~ 301 (423)
..+.+..+..+...+++|++|++.+ |..+++.++..+...+++|+.|.++.+ . +++..+..+.. ++
T Consensus 327 -~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~-l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 327 -NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-D-ITNESLESIGTYLK 403 (592)
T ss_dssp -GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-C-CCHHHHHHHHHHCC
T ss_pred -CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-C-ccHHHHHHHHhhCC
Confidence 3445555666666678888888874 667777777777777888888888433 3 67777776665 88
Q ss_pred cccEEEcc----CccCCh----hhHHHHHhcCCCccEEeeccCC-CCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHH
Q 014524 302 NLEAITMD----GARISD----SCFQTISFNCKSLVEIGLSKCL-GVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISA 372 (423)
Q Consensus 302 ~L~~L~l~----~~~~~~----~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 372 (423)
+|+.|++. .+.+++ .++..+...+++|++|++++|. .+++..+..+...+++|+.|++++| .+++.++..
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~ 482 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLME 482 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHH
Confidence 88888886 334554 4666667778899999987654 3788888888888999999999985 688888888
Q ss_pred HHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCCCCC
Q 014524 373 IADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGE 422 (423)
Q Consensus 373 ~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~ 422 (423)
+...+++|+.|++++|. +++.++..+...+++|+.|++++| ++++.|+
T Consensus 483 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~ 530 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY-RASMTGQ 530 (592)
T ss_dssp HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC-BCCTTCT
T ss_pred HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC-cCCHHHH
Confidence 88889999999999998 999988888888999999999996 4988875
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=5.4e-31 Score=251.38 Aligned_cols=346 Identities=20% Similarity=0.309 Sum_probs=270.5
Q ss_pred HHHHHHHhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCch---hHHHHHHHhCCCccEEEcc
Q 014524 54 VEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRY---RGLEMLARACPLLESVDLS 130 (423)
Q Consensus 54 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L~~L~l~ 130 (423)
...+..+.+.+++|++|++++|..+++..+..+ ...+++|++|++++|. +++ ..+..+...+++|++|+++
T Consensus 119 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~ 192 (594)
T 2p1m_B 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-----AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNIS 192 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH-----HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECT
T ss_pred HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH-----HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEec
Confidence 344566666799999999999877777777766 5578999999999885 332 3344455578999999999
Q ss_pred CcC-CCChHHHHHh-hcCCCCcEEecCCCCCCCh----------------------------------------------
Q 014524 131 YCC-GFGDREAAAL-SFASGLKEVKLDKCLNVTD---------------------------------------------- 162 (423)
Q Consensus 131 ~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~---------------------------------------------- 162 (423)
++. .+++..+..+ ..+++|++|++.+|..++.
T Consensus 193 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~ 272 (594)
T 2p1m_B 193 CLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272 (594)
T ss_dssp TCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred ccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC
Confidence 865 4566666554 4589999999987632211
Q ss_pred ------HHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhc-cCCccEEEe-----
Q 014524 163 ------VGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIAT-LAKLESLVM----- 230 (423)
Q Consensus 163 ------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l----- 230 (423)
..+..+...+++|++|+++++. +++..+..+...+++|++|++.++ +.+..+..+.. +++|++|++
T Consensus 273 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 273 FWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp CBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCT
T ss_pred CcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcc
Confidence 1122222345677777777774 776677777778999999999988 66666766665 899999999
Q ss_pred ---cCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccC-----CCcccch----HHHH-HHh
Q 014524 231 ---VGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAG-----HCFSELS----TTLL-HHM 297 (423)
Q Consensus 231 ---~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~~~~----~~~~-~~~ 297 (423)
.++..+++..+..+...+++|++|.+. +..+++..+..+...+++|+.|++. +|.. ++ +..+ ..+
T Consensus 351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY-LTLEPLDIGFGAIV 428 (594)
T ss_dssp TCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT-TTCCCTHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCccc-ccCCchhhHHHHHH
Confidence 345677888888888779999999664 5678888888888889999999998 4444 55 3333 346
Q ss_pred hcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 014524 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSC 377 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 377 (423)
..+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++..+...+++|+.|++++|.. ++.++..+...+
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l 505 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKL 505 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhC
Confidence 7799999999987 78999999888779999999999987 89999988888899999999999764 888888887779
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 378 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
++|+.|++++|+ ++..++..+...+|+|+...+..
T Consensus 506 ~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 506 ETMRSLWMSSCS-VSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp GGSSEEEEESSC-CBHHHHHHHHHHCTTEEEEEECS
T ss_pred CCCCEEeeeCCC-CCHHHHHHHHHhCCCCEEEEecC
Confidence 999999999998 79999999988899998776654
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.97 E-value=8.8e-30 Score=225.22 Aligned_cols=290 Identities=19% Similarity=0.265 Sum_probs=158.6
Q ss_pred CCccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccccccchHHHHHHHhhcCCCcceEeecCCCCCChhHH
Q 014524 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTV 83 (423)
Q Consensus 4 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 83 (423)
...|++||+|++.+||+||+ .+|+.+++.|||+|+++.... ..++.+++++. .+.+..+
T Consensus 6 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~-------------------~~~~~l~l~~~-~~~~~~~ 64 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDE-------------------SLWQTLDLTGK-NLHPDVT 64 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCS-------------------TTSSEEECTTC-BCCHHHH
T ss_pred cCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCc-------------------hhheeeccccc-cCCHHHH
Confidence 45789999999999999999 999999999999999985221 23567777663 2333222
Q ss_pred HHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChH
Q 014524 84 SFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDV 163 (423)
Q Consensus 84 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 163 (423)
..+ ..+ +++.|++++. .+.... ..+..+++|++|+++++ .++..
T Consensus 65 ~~~-------~~~--------------------------~l~~L~l~~n-~l~~~~-~~~~~~~~L~~L~L~~~-~l~~~ 108 (336)
T 2ast_B 65 GRL-------LSQ--------------------------GVIAFRCPRS-FMDQPL-AEHFSPFRVQHMDLSNS-VIEVS 108 (336)
T ss_dssp HHH-------HHT--------------------------TCSEEECTTC-EECSCC-CSCCCCBCCCEEECTTC-EECHH
T ss_pred Hhh-------hhc--------------------------cceEEEcCCc-cccccc-hhhccCCCCCEEEccCC-CcCHH
Confidence 211 113 4444444431 111100 01224556666666653 34443
Q ss_pred HHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHH
Q 014524 164 GLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRF 243 (423)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 243 (423)
.+..... .+++|++|++++|.+.+..+..+..+++|++|++++|..+++..+..
T Consensus 109 ~~~~~~~--------------------------~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 109 TLHGILS--------------------------QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp HHHHHHT--------------------------TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred HHHHHHh--------------------------hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 3343344 44444444444444444444444445555555555543444444444
Q ss_pred HHhcCCCCceEecCCCcccCcchHHHHHHhCC-CCceeccCCCc-ccch-HHHHHHhhcCCcccEEEccCcc-CChhhHH
Q 014524 244 LESGCPLLKTIFVSRCKFVSSTGLISVIRGHS-GLLQLDAGHCF-SELS-TTLLHHMRDLKNLEAITMDGAR-ISDSCFQ 319 (423)
Q Consensus 244 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~ 319 (423)
+...+++|++|++.+|..+++.++......++ +|+.|+++++. . ++ ......+..+++|+.|++++|. +++..+.
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc-CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 34445666666666544455544455555555 66666666553 2 33 2233344456666666666665 5555554
Q ss_pred HHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCcc
Q 014524 320 TISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (423)
Q Consensus 320 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 381 (423)
.+. .+++|++|++++|..+++.++..+ ..+++|+.|++++| ++++++..+...+++|+
T Consensus 242 ~l~-~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 242 EFF-QLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp GGG-GCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred HHh-CCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc--cCHHHHHHHHhhCcceE
Confidence 443 556666666666655555544333 24667777777665 66656655554444443
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=8.4e-29 Score=236.05 Aligned_cols=344 Identities=16% Similarity=0.179 Sum_probs=265.3
Q ss_pred HHHHhhcCCC-cceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCC---chhHHHHHHHhCCCccEEEccCc
Q 014524 57 LFILLDKYPY-IKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGL---RYRGLEMLARACPLLESVDLSYC 132 (423)
Q Consensus 57 ~~~~~~~~~~-l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~l~~~~~~L~~L~l~~~ 132 (423)
+..+...++. |++|++++|..+++..+..+ ...+++|++|++++|. + ...++..+...+++|++|++++.
T Consensus 129 ~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n 202 (592)
T 3ogk_B 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSI-----VTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMT 202 (592)
T ss_dssp HHHHHHHHGGGCCEEEEESCEEEEHHHHHHH-----HHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTC
T ss_pred HHHHHHhccccCcEEECcCCCCcCHHHHHHH-----HhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeecc
Confidence 4444444566 99999998876677677666 5578999999999884 3 22335556667777777777653
Q ss_pred CC--CChHHHHH-hhcCCCCcEEecCCCCC-----------------------------------------------CCh
Q 014524 133 CG--FGDREAAA-LSFASGLKEVKLDKCLN-----------------------------------------------VTD 162 (423)
Q Consensus 133 ~~--~~~~~~~~-l~~~~~L~~L~l~~~~~-----------------------------------------------~~~ 162 (423)
.. +....+.. +..+++|++|++.++.. ...
T Consensus 203 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence 21 12333332 33467777776666421 011
Q ss_pred HHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhh-ccCCccEEEecC---------
Q 014524 163 VGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA-TLAKLESLVMVG--------- 232 (423)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~--------- 232 (423)
..+..+...+++|++|+++++. +++..+..+...+++|+.|++. +.+.+..+..+. .+++|++|++.+
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred hHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 2233344567889999999884 7777776777789999999999 556666666664 599999999995
Q ss_pred -CCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCC---CcccchH-----HHHHHhhcCCcc
Q 014524 233 -CPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGH---CFSELST-----TLLHHMRDLKNL 303 (423)
Q Consensus 233 -~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~~~~~-----~~~~~~~~~~~L 303 (423)
|..+++.++..+...+++|++|++. +..+++..+..+...+++|+.|++.+ +.. +++ .....+..+++|
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~-l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREER-ITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC-CSSCCCHHHHHHHHHHCTTC
T ss_pred ccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCcc-ccCchHHHHHHHHHHhCCCC
Confidence 7888888888888889999999994 57788888888888899999999974 333 543 344456779999
Q ss_pred cEEEccCcc--CChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCcc
Q 014524 304 EAITMDGAR--ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (423)
Q Consensus 304 ~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 381 (423)
+.|++++|. +++.++..+...+++|++|++++|. +++.++..+...+++|+.|++++|. +++.++..+...+++|+
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLR 516 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCC
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccC
Confidence 999998654 8899999998889999999999887 9999999998899999999999987 89998988888899999
Q ss_pred EEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 382 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 382 ~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
.|++++|. +++.++..++..+|.++...+..
T Consensus 517 ~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 517 YLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred eeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 99999998 99999988988899887776655
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.3e-27 Score=216.72 Aligned_cols=345 Identities=18% Similarity=0.280 Sum_probs=155.6
Q ss_pred HhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCC----CccEEEccCcCCC
Q 014524 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACP----LLESVDLSYCCGF 135 (423)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~ 135 (423)
++..++++++|++++|. +++.....++.. ...+++|++|+++++ .+++..+..+...++ +|++|+++++ .+
T Consensus 23 ~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i 97 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCG-LTEARCKDISSA--LRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CL 97 (461)
T ss_dssp HHHHHTTCSEEEEESSC-CCHHHHHHHHHH--HHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CC
T ss_pred HHhhcCCccEEEccCCC-CCHHHHHHHHHH--HHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC-CC
Confidence 34445555556655543 444433333221 233455555555554 344444444444444 4555555553 24
Q ss_pred ChHH----HHHhhcCCCCcEEecCCCCCCChHHHHHHHHh----CccccccccccccccchhhHH---HHHhcCCCCcEE
Q 014524 136 GDRE----AAALSFASGLKEVKLDKCLNVTDVGLAKIAVR----CVNLERLSLKWCMEISDLGID---LLCKKCLDLKSL 204 (423)
Q Consensus 136 ~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L 204 (423)
++.+ ...+..+++|++|+++++ .+++.++..+... .++|++|+++++ .++..+.. .....+++|++|
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEE
Confidence 4322 223344555555555553 3444444443332 234555555554 34333322 222334555555
Q ss_pred eccCcccChhHHHHhhc-----cCCccEEEecCCCCCCchhHH---HHHhcCCCCceEecCCCcccCcchHHHHHH----
Q 014524 205 DVSYLKLTNDSFCSIAT-----LAKLESLVMVGCPCVDDTGLR---FLESGCPLLKTIFVSRCKFVSSTGLISVIR---- 272 (423)
Q Consensus 205 ~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 272 (423)
++++|.+.+..+..+.. .++|++|++++| .++..+.. .....+++|++|+++++ .+.+.++..+..
T Consensus 176 ~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLH 253 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTS
T ss_pred ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhc
Confidence 55555554444433332 345555555553 23332211 11122455555555553 333333333222
Q ss_pred hCCCCceeccCCCcccchHH----HHHHhhcCCcccEEEccCccCChhhHHHHHhc----CCCccEEeeccCCCCChHH-
Q 014524 273 GHSGLLQLDAGHCFSELSTT----LLHHMRDLKNLEAITMDGARISDSCFQTISFN----CKSLVEIGLSKCLGVTNTG- 343 (423)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~- 343 (423)
.+++|+.|++++|. +++. ....+..+++|+.|++++|.+++.+...+... .++|++|++++|. +++.+
T Consensus 254 ~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 330 (461)
T 1z7x_W 254 PSSRLRTLWIWECG--ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC 330 (461)
T ss_dssp TTCCCCEEECTTSC--CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred CCCCceEEECcCCC--CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH
Confidence 24555555555553 3333 22233345555555555555554444433321 2355555555554 44332
Q ss_pred --HHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhh----CCCccEEEeccCCCCCHHHHHHHH---hcCCCCCEEeccCC
Q 014524 344 --ITQLVSGCVNLKTIDLTCCHSITDDAISAIADS----CRGLVCLKIESCNMITEKGLYQLG---SFCLRLEEIDLTDC 414 (423)
Q Consensus 344 --~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~----~~~L~~L~l~~c~~i~~~~~~~l~---~~~~~L~~L~l~~c 414 (423)
+......+++|+.|++++| .+++.++..+.+. .++|+.|++++|. +++.++..+. ..+++|++|++++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~- 407 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN- 407 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS-
T ss_pred HHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC-
Confidence 2222234455555555553 4454444444332 3455555555554 5543333322 1345555555555
Q ss_pred CCCCC
Q 014524 415 NGVND 419 (423)
Q Consensus 415 ~~i~~ 419 (423)
+.+++
T Consensus 408 N~i~~ 412 (461)
T 1z7x_W 408 NCLGD 412 (461)
T ss_dssp SSCCH
T ss_pred CCCCH
Confidence 34443
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=4.1e-25 Score=204.09 Aligned_cols=346 Identities=22% Similarity=0.310 Sum_probs=255.3
Q ss_pred HHHHHhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhH---HHHHHHhCCCccEEEccCc
Q 014524 56 FLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRG---LEMLARACPLLESVDLSYC 132 (423)
Q Consensus 56 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~ 132 (423)
.+...+..++++++|+++++ .+++.....+.... ....++|++|+++++ .++... +......+++|++|+++++
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l-~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL-QTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT-CSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred HHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH-hhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 35566778899999999984 47776666652211 111227999999998 466543 4444457899999999984
Q ss_pred CCCChHHHHHhhc-----CCCCcEEecCCCCCCChHHH---HHHHHhCccccccccccccccchhhHHHHHh----cCCC
Q 014524 133 CGFGDREAAALSF-----ASGLKEVKLDKCLNVTDVGL---AKIAVRCVNLERLSLKWCMEISDLGIDLLCK----KCLD 200 (423)
Q Consensus 133 ~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~ 200 (423)
.+.+.+...+.. .++|++|++++| .++.... ......+++|++|+++++ .+.+.++..+.. ..++
T Consensus 124 -~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 124 -LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp -BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCC
T ss_pred -cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCC
Confidence 477666655543 568999999996 6666543 344455899999999988 576666655543 3569
Q ss_pred CcEEeccCcccChhHH----HHhhccCCccEEEecCCCCCCchhHHHHHh----cCCCCceEecCCCcccCcchH---HH
Q 014524 201 LKSLDVSYLKLTNDSF----CSIATLAKLESLVMVGCPCVDDTGLRFLES----GCPLLKTIFVSRCKFVSSTGL---IS 269 (423)
Q Consensus 201 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~---~~ 269 (423)
|+.|++++|.+.+... ..+..+++|++|+++++ .+.+.+...+.. .+++|++|++++| .+++.+. ..
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~ 278 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCR 278 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHH
Confidence 9999999998887653 34456899999999985 566655544443 4789999999986 6776653 44
Q ss_pred HHHhCCCCceeccCCCcccchHHHHHHhhc-----CCcccEEEccCccCChhhHHHHH---hcCCCccEEeeccCCCCCh
Q 014524 270 VIRGHSGLLQLDAGHCFSELSTTLLHHMRD-----LKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKCLGVTN 341 (423)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~ 341 (423)
....+++|+.|+++++. +++.....+.. .++|+.|++++|.+++.+...+. ..+++|++|+++++. +++
T Consensus 279 ~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 355 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNE--LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LED 355 (461)
T ss_dssp HHHHCTTCCEEECTTCC--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHH
T ss_pred HHhhCCCcceEECCCCC--CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-ccc
Confidence 45568999999999986 67665555543 37999999999998887654433 467999999999985 888
Q ss_pred HHHHHHHhc----CCCCcEEecCCCCCCCHHHHHHHHh---hCCCccEEEeccCCCCCHHHHHHHHhcCC----CCCEEe
Q 014524 342 TGITQLVSG----CVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESCNMITEKGLYQLGSFCL----RLEEID 410 (423)
Q Consensus 342 ~~~~~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~~~----~L~~L~ 410 (423)
.+...+... .++|+.|++++| .+++.++..+.. .+++|+.|++++|. +++.++..+...++ +|+.|.
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~ 433 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLV 433 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhhee
Confidence 777666543 679999999996 788866555443 48999999999997 99998888886544 599999
Q ss_pred ccCC
Q 014524 411 LTDC 414 (423)
Q Consensus 411 l~~c 414 (423)
+.++
T Consensus 434 ~~~~ 437 (461)
T 1z7x_W 434 LYDI 437 (461)
T ss_dssp CTTC
T ss_pred eccc
Confidence 8773
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.3e-22 Score=177.38 Aligned_cols=305 Identities=16% Similarity=0.169 Sum_probs=221.4
Q ss_pred cCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHH
Q 014524 63 KYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAA 142 (423)
Q Consensus 63 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 142 (423)
.+++++.++++++. +.+.. . ...+++|++|+++++. ++... . ...+++|++|+++++ .+.+. ..
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~--~------~~~~~~L~~L~l~~n~-i~~~~--~-~~~l~~L~~L~L~~n-~i~~~--~~ 105 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQ--G------IEYLTNLEYLNLNGNQ-ITDIS--P-LSNLVKLTNLYIGTN-KITDI--SA 105 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCT--T------GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSS-CCCCC--GG
T ss_pred hcccccEEEEeCCc-cccch--h------hhhcCCccEEEccCCc-cccch--h-hhcCCcCCEEEccCC-cccCc--hH
Confidence 56889999999854 33321 1 2467999999999884 43321 1 447899999999985 44443 35
Q ss_pred hhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhcc
Q 014524 143 LSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL 222 (423)
Q Consensus 143 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 222 (423)
+..+++|++|+++++ .++.... ...+++|++|+++++........ ...+++|+.|+++++.+..... +..+
T Consensus 106 ~~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~l 176 (347)
T 4fmz_A 106 LQNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP--IANL 176 (347)
T ss_dssp GTTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred HcCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh--hccC
Confidence 778999999999985 4544322 44689999999998854443221 3578999999999996654432 7789
Q ss_pred CCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCc
Q 014524 223 AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302 (423)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 302 (423)
++|++|+++++. +..... ...+++|+.|++.++. +..... ...+++|+.|+++++. +..... +..+++
T Consensus 177 ~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~--l~~~~~--~~~l~~ 244 (347)
T 4fmz_A 177 TDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNK--ITDLSP--LANLSQ 244 (347)
T ss_dssp TTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC--CCCCGG--GTTCTT
T ss_pred CCCCEEEccCCc-cccccc---ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCc--cCCCcc--hhcCCC
Confidence 999999999864 333221 3448999999999863 333322 4568999999999987 333222 788999
Q ss_pred ccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccE
Q 014524 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVC 382 (423)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 382 (423)
|+.|++++|.+.+. ..+ ..+++|++|+++++. +++. .....+++|+.|++++| .+++.....+. .+++|+.
T Consensus 245 L~~L~l~~n~l~~~--~~~-~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~ 315 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAV-KDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTT 315 (347)
T ss_dssp CCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSE
T ss_pred CCEEECCCCccCCC--hhH-hcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCC-cCCCcChhHhh-ccccCCE
Confidence 99999999987763 223 478999999999986 6553 23468899999999996 66766666565 5999999
Q ss_pred EEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 014524 383 LKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 383 L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (423)
|++++|+ ++.... ...+++|+.|++++ +.++
T Consensus 316 L~L~~n~-l~~~~~---~~~l~~L~~L~l~~-N~i~ 346 (347)
T 4fmz_A 316 LFLSQNH-ITDIRP---LASLSKMDSADFAN-QVIK 346 (347)
T ss_dssp EECCSSS-CCCCGG---GGGCTTCSEESSSC-C---
T ss_pred EEccCCc-cccccC---hhhhhccceeehhh-hccc
Confidence 9999998 765432 34899999999999 5554
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.5e-21 Score=168.76 Aligned_cols=254 Identities=15% Similarity=0.216 Sum_probs=191.1
Q ss_pred CcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHH-HhhccCCccE
Q 014524 149 LKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC-SIATLAKLES 227 (423)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~ 227 (423)
++.+++++ ..+.+..+..+. .++++.|++.++ .+...... + ..+++|++|++++|.+.+..+. .+..+++|++
T Consensus 49 ~~~l~l~~-~~~~~~~~~~~~--~~~l~~L~l~~n-~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTG-KNLHPDVTGRLL--SQGVIAFRCPRS-FMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTT-CBCCHHHHHHHH--HTTCSEEECTTC-EECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeecccc-ccCCHHHHHhhh--hccceEEEcCCc-cccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 55555555 233433222221 145666666554 22221111 1 2578999999999988877444 5667999999
Q ss_pred EEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHH-HHHHhhcCC-cccE
Q 014524 228 LVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTT-LLHHMRDLK-NLEA 305 (423)
Q Consensus 228 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~-~L~~ 305 (423)
|+++++ .+++.....+.. +++|++|++.+|..+++..+......+++|+.|++++|.. +++. ....+..++ +|++
T Consensus 123 L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 123 LSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp EECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHHSCTTCCE
T ss_pred EeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHhcccCCCE
Confidence 999986 466666666666 9999999999987788878888888899999999999944 6665 456678899 9999
Q ss_pred EEccCc--cCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEE
Q 014524 306 ITMDGA--RISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCL 383 (423)
Q Consensus 306 L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 383 (423)
|++++| .+++..+......+++|++|++++|..+++.....+ ..+++|+.|++++|..+++.++..+. .+++|+.|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L 277 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTL 277 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEE
Confidence 999999 678777877777899999999999886777766655 47899999999999888888776565 59999999
Q ss_pred EeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 384 KIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 384 ~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
++++| +++.++..+...+++|+ +++ +.++.
T Consensus 278 ~l~~~--i~~~~~~~l~~~l~~L~---l~~-n~l~~ 307 (336)
T 2ast_B 278 QVFGI--VPDGTLQLLKEALPHLQ---INC-SHFTT 307 (336)
T ss_dssp ECTTS--SCTTCHHHHHHHSTTSE---ESC-CCSCC
T ss_pred eccCc--cCHHHHHHHHhhCcceE---Eec-ccCcc
Confidence 99998 88888888875666665 554 66654
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2e-23 Score=192.39 Aligned_cols=333 Identities=15% Similarity=0.127 Sum_probs=192.3
Q ss_pred CCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhh
Q 014524 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (423)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (423)
+++++|+++++ .++...... ...+++|++|+++++..... ........+++|++|+++++ .+.......+.
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~------~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS------FSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYN-QFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT------TSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTC-TTCEECTTTTT
T ss_pred CccCEEEecCC-ccCcCChhH------hccCccccEEECcCCcccce-ECcccccccccCCEEeCCCC-ccCccChhhcc
Confidence 56888888874 344332211 35678888888887742111 11111235788888888873 35544445567
Q ss_pred cCCCCcEEecCCCCCCChHHHHH-HHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhcc-
Q 014524 145 FASGLKEVKLDKCLNVTDVGLAK-IAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL- 222 (423)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~- 222 (423)
.+++|++|+++++ .++...+.. ....+++|++|+++++ .+.......+...+++|+.|++++|.+.......+..+
T Consensus 101 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 101 GLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred CcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 7888888888885 454432222 2344788888888876 44433222333467888888888886554333333322
Q ss_pred -CCccEEEecCCC-------------------------------CCCchhHHHHHhc--CCCCceEecCCCcccCc----
Q 014524 223 -AKLESLVMVGCP-------------------------------CVDDTGLRFLESG--CPLLKTIFVSRCKFVSS---- 264 (423)
Q Consensus 223 -~~L~~L~l~~~~-------------------------------~~~~~~~~~l~~~--~~~L~~L~l~~~~~~~~---- 264 (423)
++|+.|++.++. .+.......+... .++|+.|++.++.....
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 344444444322 2222222222111 14444444443211000
Q ss_pred -----chHHHH-HHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCC
Q 014524 265 -----TGLISV-IRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLG 338 (423)
Q Consensus 265 -----~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 338 (423)
.....+ .-..++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|+++++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSK--IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNF- 334 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-
T ss_pred hhhccCcccccccccccCceEEEecCcc--ccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCc-
Confidence 000000 0012577788877776 4444455677788999999998877654433333 67889999998876
Q ss_pred CChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 014524 339 VTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (423)
++..... ....+++|+.|++++| .++......+. .+++|+.|++++|. ++..... ....+++|+.|++++ +.++
T Consensus 335 l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~-N~l~ 408 (455)
T 3v47_A 335 LGSIDSR-MFENLDKLEVLDLSYN-HIRALGDQSFL-GLPNLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHT-NPWD 408 (455)
T ss_dssp CCEECGG-GGTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCS-SCBC
T ss_pred cCCcChh-HhcCcccCCEEECCCC-cccccChhhcc-ccccccEEECCCCc-cccCCHh-HhccCCcccEEEccC-CCcc
Confidence 5443222 2346889999999985 45543333333 57899999999886 6653322 223788999999988 4444
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4.4e-20 Score=163.71 Aligned_cols=285 Identities=19% Similarity=0.211 Sum_probs=207.7
Q ss_pred hhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHH
Q 014524 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (423)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 140 (423)
+..++++++|+++++. +++... ...+++|++|+++++. +... .. ...+++|++|+++++. +....
T Consensus 62 ~~~~~~L~~L~l~~n~-i~~~~~--------~~~l~~L~~L~L~~n~-i~~~--~~-~~~l~~L~~L~l~~n~-i~~~~- 126 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ-ITDISP--------LSNLVKLTNLYIGTNK-ITDI--SA-LQNLTNLRELYLNEDN-ISDIS- 126 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG--------GTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCSEEECTTSC-CCCCG-
T ss_pred hhhcCCccEEEccCCc-cccchh--------hhcCCcCCEEEccCCc-ccCc--hH-HcCCCcCCEEECcCCc-ccCch-
Confidence 5678999999999864 444222 2577999999999884 4332 22 3478999999999843 44332
Q ss_pred HHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhh
Q 014524 141 AALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA 220 (423)
Q Consensus 141 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 220 (423)
.+..+++|++|+++++...+.... ...+++|++|+++++ .+..... ...+++|+.|++++|.+.... .+.
T Consensus 127 -~~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~-~~~~~~~---~~~l~~L~~L~l~~n~l~~~~--~~~ 196 (347)
T 4fmz_A 127 -PLANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTES-KVKDVTP---IANLTDLYSLSLNYNQIEDIS--PLA 196 (347)
T ss_dssp -GGTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECTTSCCCCCG--GGG
T ss_pred -hhccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCC-CcCCchh---hccCCCCCEEEccCCcccccc--ccc
Confidence 277899999999999755544222 455899999999987 3433322 457899999999999766533 277
Q ss_pred ccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcC
Q 014524 221 TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDL 300 (423)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 300 (423)
.+++|+.|++.++. +..... ...+++|++|+++++. +..... ...+++|+.|+++++. ++. ...+..+
T Consensus 197 ~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~--l~~--~~~~~~l 264 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ--ISD--INAVKDL 264 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC--CCC--CGGGTTC
T ss_pred CCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc--cCC--ChhHhcC
Confidence 89999999999853 333221 3458999999999864 333322 5568999999999986 443 2457889
Q ss_pred CcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCc
Q 014524 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGL 380 (423)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 380 (423)
++|+.|++++|.+.+.. . ...+++|++|++++|. ++......+ ..+++|+.|++++|. +++... ...+++|
T Consensus 265 ~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L 335 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDIS--V-LNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFLSQNH-ITDIRP---LASLSKM 335 (347)
T ss_dssp TTCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEECCSSS-CCCCGG---GGGCTTC
T ss_pred CCcCEEEccCCccCCCh--h-hcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEccCCc-cccccC---hhhhhcc
Confidence 99999999999877642 2 3478999999999987 776655555 479999999999975 444322 3469999
Q ss_pred cEEEeccCCCCC
Q 014524 381 VCLKIESCNMIT 392 (423)
Q Consensus 381 ~~L~l~~c~~i~ 392 (423)
+.|++++|+ ++
T Consensus 336 ~~L~l~~N~-i~ 346 (347)
T 4fmz_A 336 DSADFANQV-IK 346 (347)
T ss_dssp SEESSSCC----
T ss_pred ceeehhhhc-cc
Confidence 999999987 54
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=7.6e-19 Score=157.90 Aligned_cols=271 Identities=16% Similarity=0.220 Sum_probs=181.8
Q ss_pred CChHHHH----HhhcCCCCcEEecCCCCCCChHHHHHHHH---hCcccccccccccc--ccch---hhHHHH---HhcCC
Q 014524 135 FGDREAA----ALSFASGLKEVKLDKCLNVTDVGLAKIAV---RCVNLERLSLKWCM--EISD---LGIDLL---CKKCL 199 (423)
Q Consensus 135 ~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~--~~~~---~~~~~~---~~~~~ 199 (423)
+++.+.. .+..+++|++|+++++ .++......+.. .+++|++|+++++. .+.. .++..+ ...++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 4445544 3445889999999995 777776666543 57889999998762 2222 122222 34678
Q ss_pred CCcEEeccCcccChhH----HHHhhccCCccEEEecCCCCCCchhHHHHHhc---C---------CCCceEecCCCcccC
Q 014524 200 DLKSLDVSYLKLTNDS----FCSIATLAKLESLVMVGCPCVDDTGLRFLESG---C---------PLLKTIFVSRCKFVS 263 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~---------~~L~~L~l~~~~~~~ 263 (423)
+|++|++++|.+...+ ...+..+++|++|++++| .++......+... + ++|++|+++++ .++
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~ 172 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLE 172 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCT
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCC
Confidence 9999999999887743 335567899999999885 4444333333331 3 88999999875 466
Q ss_pred cchHHH---HHHhCCCCceeccCCCcccchHH----HHH-HhhcCCcccEEEccCccCChhhHHHH---HhcCCCccEEe
Q 014524 264 STGLIS---VIRGHSGLLQLDAGHCFSELSTT----LLH-HMRDLKNLEAITMDGARISDSCFQTI---SFNCKSLVEIG 332 (423)
Q Consensus 264 ~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L~~L~ 332 (423)
+.++.. .+..+++|+.|+++++. +++. ... .+..+++|+.|++++|.+++.+...+ ...+++|++|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNG--IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSC--CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCC--CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 555553 44567889999998886 5543 233 56678889999998888876554433 34678889999
Q ss_pred eccCCCCChHHHHHHHhc-----CCCCcEEecCCCCCCCHHHHHHHH----hhCCCccEEEeccCCCCCHHH--HHHHHh
Q 014524 333 LSKCLGVTNTGITQLVSG-----CVNLKTIDLTCCHSITDDAISAIA----DSCRGLVCLKIESCNMITEKG--LYQLGS 401 (423)
Q Consensus 333 l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~c~~i~~~~--~~~l~~ 401 (423)
+++|. +++.+...+... +++|+.|++++| .+++.++..+. ..+++|+.|++++|. ++... +..+..
T Consensus 251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIRE 327 (386)
T ss_dssp CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHH
T ss_pred CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHH
Confidence 98877 877765544432 788999999884 67775433332 347889999998887 66554 455665
Q ss_pred cCCCCCEEeccC
Q 014524 402 FCLRLEEIDLTD 413 (423)
Q Consensus 402 ~~~~L~~L~l~~ 413 (423)
.+++++.+++..
T Consensus 328 ~l~~~~~~~l~~ 339 (386)
T 2ca6_A 328 VFSTRGRGELDE 339 (386)
T ss_dssp HHHHHTCCEECC
T ss_pred HhhhcCcchhhh
Confidence 566665555543
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.9e-19 Score=160.66 Aligned_cols=260 Identities=14% Similarity=0.129 Sum_probs=149.8
Q ss_pred hCCCccEEEccCcCCCChHHHHH----hhcCCCCcEEecCCC--CCCCh---HHHHHH---HHhCccccccccccccccc
Q 014524 120 ACPLLESVDLSYCCGFGDREAAA----LSFASGLKEVKLDKC--LNVTD---VGLAKI---AVRCVNLERLSLKWCMEIS 187 (423)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~--~~~~~---~~~~~~---~~~~~~L~~L~l~~~~~~~ 187 (423)
.+++|++|+++++ .+++.+... +..+++|++|+++++ ..++. ..+..+ ...+++|++|+++++ .++
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 4555555555552 344443333 224555555555553 11111 112111 234566666666655 344
Q ss_pred hhh---HHHHHhcCCCCcEEeccCcccChhHHHHhhc----c---------CCccEEEecCCCCCCchhHHHH---HhcC
Q 014524 188 DLG---IDLLCKKCLDLKSLDVSYLKLTNDSFCSIAT----L---------AKLESLVMVGCPCVDDTGLRFL---ESGC 248 (423)
Q Consensus 188 ~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~~~~l---~~~~ 248 (423)
..+ +......+++|++|++++|.+.+.....+.. + ++|++|+++++ .+++..+..+ ...+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhC
Confidence 332 2222345666777777766665444333332 2 67777777764 4444444422 2246
Q ss_pred CCCceEecCCCcccCcchHHHHHH----hCCCCceeccCCCcccch----HHHHHHhhcCCcccEEEccCccCChhhHHH
Q 014524 249 PLLKTIFVSRCKFVSSTGLISVIR----GHSGLLQLDAGHCFSELS----TTLLHHMRDLKNLEAITMDGARISDSCFQT 320 (423)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 320 (423)
++|++|++.++ .+.+.++..+.. .+++|+.|+++++. ++ ......+..+++|+.|++++|.+++.+...
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 78888888775 455555444333 56788888888876 55 334445677888999999888888776555
Q ss_pred HHhc-----CCCccEEeeccCCCCChHHHHHHH----hcCCCCcEEecCCCCCCCHHH--HHHHHhhCCCccEEEecc
Q 014524 321 ISFN-----CKSLVEIGLSKCLGVTNTGITQLV----SGCVNLKTIDLTCCHSITDDA--ISAIADSCRGLVCLKIES 387 (423)
Q Consensus 321 l~~~-----~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~ 387 (423)
+... +++|++|++++|. +++.++..+. ..+++|+.|++++| .++... +..+...+++++.+.+..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 4432 7889999998877 7775443332 45789999999885 445444 456666666666666554
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=7.8e-23 Score=195.34 Aligned_cols=159 Identities=19% Similarity=0.123 Sum_probs=63.3
Q ss_pred CCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcch-HHHHHHhCCC
Q 014524 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTG-LISVIRGHSG 276 (423)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~ 276 (423)
+++|+.|++++|.+.......+..+++|++|+++++......... ....+++|++|+++++. +.... .......+++
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDD-IETSDCCNLQLRNLSH 377 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTT
T ss_pred cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCc-cccccCcchhcccCCC
Confidence 344444444444443332333444555555555543211000000 01124555555555432 22111 0111223455
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcE
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (423)
|+.|+++++. +.......+..+++|+.|++++|.+...........+++|++|+++++. ++.... .....+++|+.
T Consensus 378 L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 453 (606)
T 3t6q_A 378 LQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQH 453 (606)
T ss_dssp CCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCE
T ss_pred CCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCE
Confidence 5555555554 2222233344455555555555543322111111244555555555543 222111 11123455555
Q ss_pred EecCCC
Q 014524 357 IDLTCC 362 (423)
Q Consensus 357 L~l~~~ 362 (423)
|++++|
T Consensus 454 L~L~~n 459 (606)
T 3t6q_A 454 LNLQGN 459 (606)
T ss_dssp EECTTC
T ss_pred EECCCC
Confidence 555553
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=2.5e-19 Score=165.14 Aligned_cols=301 Identities=18% Similarity=0.213 Sum_probs=136.0
Q ss_pred hhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHH
Q 014524 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (423)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 140 (423)
+..+++|++|+++++. +++... + ..+++|++|+++++. +.... . ...+++|++|+++++ .+....
T Consensus 64 ~~~l~~L~~L~Ls~n~-l~~~~~--~------~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n-~l~~~~- 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-LTDITP--L------KNLTKLVDILMNNNQ-IADIT--P-LANLTNLTGLTLFNN-QITDID- 128 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG--G------TTCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSS-CCCCCG-
T ss_pred hhhhcCCCEEECCCCc-cCCchh--h------hccccCCEEECCCCc-cccCh--h-hcCCCCCCEEECCCC-CCCCCh-
Confidence 4567788888888754 333211 2 456778888887764 22211 1 336777888888764 333322
Q ss_pred HHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhh
Q 014524 141 AALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA 220 (423)
Q Consensus 141 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 220 (423)
.+..+++|++|+++++ .++... . ...+++|++|.+... +.... . ...+++|+.|++++|.+... ..+.
T Consensus 129 -~~~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~~--~~~~~--~-~~~l~~L~~L~l~~n~l~~~--~~l~ 196 (466)
T 1o6v_A 129 -PLKNLTNLNRLELSSN-TISDIS--A-LSGLTSLQQLSFGNQ--VTDLK--P-LANLTTLERLDISSNKVSDI--SVLA 196 (466)
T ss_dssp -GGTTCTTCSEEEEEEE-EECCCG--G-GTTCTTCSEEEEEES--CCCCG--G-GTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred -HHcCCCCCCEEECCCC-ccCCCh--h-hccCCcccEeecCCc--ccCch--h-hccCCCCCEEECcCCcCCCC--hhhc
Confidence 2566777777777764 233211 1 223455555554321 11110 1 22445555555555543322 1234
Q ss_pred ccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchH--------------------HHHHHhCCCCcee
Q 014524 221 TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGL--------------------ISVIRGHSGLLQL 280 (423)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~~~~L~~L 280 (423)
.+++|++|+++++. +..... + ..+++|+.|++.++. +..... .. ...+++|+.|
T Consensus 197 ~l~~L~~L~l~~n~-l~~~~~--~-~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQ-ISDITP--L-GILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSC-CCCCGG--G-GGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred cCCCCCEEEecCCc-cccccc--c-cccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 44555555555432 111100 1 124444444444431 221100 00 2234445555
Q ss_pred ccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecC
Q 014524 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (423)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (423)
+++++. +.... .+..+++|+.|++++|.+.+... + ..+++|+.|+++++. +++... ...+++|+.|+++
T Consensus 271 ~l~~n~--l~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 271 KLGANQ--ISNIS--PLAGLTALTNLELNENQLEDISP--I-SNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFY 339 (466)
T ss_dssp ECCSSC--CCCCG--GGTTCTTCSEEECCSSCCSCCGG--G-GGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECC
T ss_pred ECCCCc--cCccc--cccCCCccCeEEcCCCcccCchh--h-cCCCCCCEEECcCCc-CCCchh---hccCccCCEeECC
Confidence 544443 11111 13445555555555554433211 1 245555555555543 332211 2345555555555
Q ss_pred CCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 361 CCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
+| .+++. ..+ ..+++|+.|++++|. +++... ...+++|+.|++++
T Consensus 340 ~n-~l~~~--~~l-~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 340 NN-KVSDV--SSL-ANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLND 384 (466)
T ss_dssp SS-CCCCC--GGG-TTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCC
T ss_pred CC-ccCCc--hhh-ccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccC
Confidence 54 22221 111 235555666665554 433221 23555666666655
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=2.2e-22 Score=196.57 Aligned_cols=281 Identities=16% Similarity=0.135 Sum_probs=141.3
Q ss_pred hCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCC
Q 014524 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (423)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 199 (423)
.+++|++|+++++ .+.......+..+++|++|+++++. ++..... . .+++|++|+++++ .+.......+...++
T Consensus 221 ~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~-~--~l~~L~~L~L~~n-~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 221 DCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQ-FVGPIPP-L--PLKSLQYLSLAEN-KFTGEIPDFLSGACD 294 (768)
T ss_dssp TCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSC-CEESCCC-C--CCTTCCEEECCSS-EEEESCCCCSCTTCT
T ss_pred cCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCc-ccCccCc-c--ccCCCCEEECcCC-ccCCccCHHHHhhcC
Confidence 4455555555552 2333334445555555555555532 1110000 0 2455555555544 222111111222346
Q ss_pred CCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCccc--CcchHHHHH------
Q 014524 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFV--SSTGLISVI------ 271 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~------ 271 (423)
+|+.|++++|.+.......+..+++|++|+++++..........+. .+++|++|+++++... ....+....
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-cCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 6777777666554444445566677777777664211111112222 3667777777664211 011111110
Q ss_pred -----------------HhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeec
Q 014524 272 -----------------RGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLS 334 (423)
Q Consensus 272 -----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 334 (423)
..+++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|+.|+++
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~ 450 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLW 450 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECC
Confidence 002345555555554 3333444566677777777777765433222333 56777777777
Q ss_pred cCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 014524 335 KCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDC 414 (423)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c 414 (423)
++. ++..... ....+++|+.|++++| .++......+ ..+++|+.|++++|. ++......+. .+++|+.|++++|
T Consensus 451 ~n~-l~~~~p~-~~~~l~~L~~L~L~~N-~l~~~~p~~l-~~l~~L~~L~L~~N~-l~~~~p~~~~-~l~~L~~L~L~~N 524 (768)
T 3rgz_A 451 LNM-LEGEIPQ-ELMYVKTLETLILDFN-DLTGEIPSGL-SNCTNLNWISLSNNR-LTGEIPKWIG-RLENLAILKLSNN 524 (768)
T ss_dssp SSC-CCSCCCG-GGGGCTTCCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSC-CCSCCCGGGG-GCTTCCEEECCSS
T ss_pred CCc-ccCcCCH-HHcCCCCceEEEecCC-cccCcCCHHH-hcCCCCCEEEccCCc-cCCcCChHHh-cCCCCCEEECCCC
Confidence 765 4322111 2236778888888875 3332222222 357888888888876 5543323333 6788888888884
Q ss_pred CCC
Q 014524 415 NGV 417 (423)
Q Consensus 415 ~~i 417 (423)
.+
T Consensus 525 -~l 526 (768)
T 3rgz_A 525 -SF 526 (768)
T ss_dssp -CC
T ss_pred -cc
Confidence 44
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.5e-20 Score=177.42 Aligned_cols=181 Identities=18% Similarity=0.114 Sum_probs=104.4
Q ss_pred CCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhh
Q 014524 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (423)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (423)
+.+++|+++++. ++...... ...+++|++|+++++. +....... ...+++|++|++++ ..+.......+.
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~------~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGD------LRACANLQVLILKSSR-INTIEGDA-FYSLGSLEHLDLSD-NHLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSC-CCEECSST------TSSCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTT-SCCCSCCHHHHT
T ss_pred CCccEEECcCCc-cCccChhh------hhcCCcccEEECCCCC-cCccChhh-ccccccCCEEECCC-CccCccCHHHhc
Confidence 578888888743 44322111 3466788888888773 33211111 23577888888887 345555555577
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCC
Q 014524 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (423)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 224 (423)
.+++|++|+++++ .++..........+++|++|+++++..+....... ...+++|++|++++|.+.......+..+++
T Consensus 96 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 96 PLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp TCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred cCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCcccccChhhhhcccc
Confidence 7888888888874 34322111223447788888887763232221111 235677888888877666554455666677
Q ss_pred ccEEEecCCCCCCchhHHHHHhcCCCCceEecCCC
Q 014524 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRC 259 (423)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 259 (423)
|++|++.++. ... ....+...+++|+.|+++++
T Consensus 174 L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 174 IHHLTLHLSE-SAF-LLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp EEEEEEECSB-STT-HHHHHHHSTTTBSEEEEESC
T ss_pred CceEecccCc-ccc-cchhhHhhcccccEEEccCC
Confidence 7777776532 221 11222333666777666653
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=5.5e-19 Score=162.80 Aligned_cols=252 Identities=19% Similarity=0.210 Sum_probs=161.4
Q ss_pred CCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHh
Q 014524 64 YPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAAL 143 (423)
Q Consensus 64 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 143 (423)
+++++.|++.++. +... .. ...+++|++|+++++. +.... . ...+++|++|+++++. +..... +
T Consensus 45 l~~l~~L~l~~~~-i~~l--~~------~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~--~ 108 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKSI--DG------VEYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQ-IADITP--L 108 (466)
T ss_dssp HHTCCEEECCSSC-CCCC--TT------GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCCGG--G
T ss_pred hccccEEecCCCC-CccC--cc------hhhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECCCCc-cccChh--h
Confidence 4678999988753 3321 11 2467999999999884 33321 1 4478999999999853 443322 7
Q ss_pred hcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccC
Q 014524 144 SFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLA 223 (423)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 223 (423)
..+++|++|+++++ .++.... ...+++|++|+++++ .+.... . ...+++|+.|++.++ +.. ...+..++
T Consensus 109 ~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~~-~~~--~~~~~~l~ 177 (466)
T 1o6v_A 109 ANLTNLTGLTLFNN-QITDIDP---LKNLTNLNRLELSSN-TISDIS--A-LSGLTSLQQLSFGNQ-VTD--LKPLANLT 177 (466)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG---GTTCTTCSEEEEEEE-EECCCG--G-GTTCTTCSEEEEEES-CCC--CGGGTTCT
T ss_pred cCCCCCCEEECCCC-CCCCChH---HcCCCCCCEEECCCC-ccCCCh--h-hccCCcccEeecCCc-ccC--chhhccCC
Confidence 78999999999985 4554322 456899999999987 454432 2 357899999999754 222 22377899
Q ss_pred CccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcc
Q 014524 224 KLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNL 303 (423)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 303 (423)
+|+.|+++++. +... ..+ ..+++|++|++.++. +..... ...+++|+.|+++++. +.. ...+..+++|
T Consensus 178 ~L~~L~l~~n~-l~~~--~~l-~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~--l~~--~~~l~~l~~L 245 (466)
T 1o6v_A 178 TLERLDISSNK-VSDI--SVL-AKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQ--LKD--IGTLASLTNL 245 (466)
T ss_dssp TCCEEECCSSC-CCCC--GGG-GGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC--CCC--CGGGGGCTTC
T ss_pred CCCEEECcCCc-CCCC--hhh-ccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCC--ccc--chhhhcCCCC
Confidence 99999999864 3332 123 348999999999864 333221 3457888988888876 332 1345667777
Q ss_pred cEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 304 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
+.|++++|.+..... ...+++|++|+++++. ++.... ...+++|+.|++++
T Consensus 246 ~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 246 TDLDLANNQISNLAP---LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNE 296 (466)
T ss_dssp SEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCS
T ss_pred CEEECCCCccccchh---hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCC
Confidence 777777776544322 2255666666666554 332111 22444555555544
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=5.7e-22 Score=189.37 Aligned_cols=209 Identities=16% Similarity=0.153 Sum_probs=103.4
Q ss_pred CCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCC
Q 014524 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (423)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (423)
+++|+.|++++|.+.. ....+..+++|++|+++++ .+.......+ ..+++|++|++.++...... .......+++|
T Consensus 277 l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L 352 (606)
T 3t6q_A 277 FSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSAN-KFENLCQISA-SNFPSLTHLSIKGNTKRLEL-GTGCLENLENL 352 (606)
T ss_dssp CTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTC-CCSBGGGGCG-GGCTTCSEEECCSCSSCCBC-CSSTTTTCTTC
T ss_pred ccCCCEEeccCCccCC-CChhhcccccCCEEECccC-CcCcCchhhh-hccCcCCEEECCCCCccccc-chhhhhccCcC
Confidence 3445555555443331 1112333455555555543 2222111112 22555666666554211110 01112335666
Q ss_pred ceeccCCCcccchHHH--HHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCc
Q 014524 278 LQLDAGHCFSELSTTL--LHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLK 355 (423)
Q Consensus 278 ~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 355 (423)
+.|+++++. +.... ...+..+++|+.|++++|.+.......+. .+++|++|+++++. ++..........+++|+
T Consensus 353 ~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 353 RELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTR-LKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCC-EECCTTCCTTTTCTTCC
T ss_pred CEEECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCc-CCCcccchhhhCcccCC
Confidence 666666655 22221 33455677777777777765443322332 56778888887765 33222222234678888
Q ss_pred EEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHH--HHHhcCCCCCEEeccCCCCCC
Q 014524 356 TIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLY--QLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 356 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~--~l~~~~~~L~~L~l~~c~~i~ 418 (423)
.|++++|. ++......+ ..+++|+.|++++|. +++..+. .....+++|+.|++++| .++
T Consensus 429 ~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~ 489 (606)
T 3t6q_A 429 VLNLSHSL-LDISSEQLF-DGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLS 489 (606)
T ss_dssp EEECTTCC-CBTTCTTTT-TTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCC
T ss_pred EEECCCCc-cCCcCHHHH-hCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccC
Confidence 88888853 333222222 247788888888776 5432111 11235667777777773 443
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=4.3e-22 Score=194.47 Aligned_cols=303 Identities=18% Similarity=0.140 Sum_probs=176.5
Q ss_pred ccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhC
Q 014524 93 SWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRC 172 (423)
Q Consensus 93 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 172 (423)
..+++|++|+++++. +..... .....+++|++|+++++. +..... ...+++|++|+++++ .++......+...+
T Consensus 220 ~~l~~L~~L~Ls~n~-l~~~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~L~~n-~l~~~ip~~~~~~~ 293 (768)
T 3rgz_A 220 GDCSALQHLDISGNK-LSGDFS-RAISTCTELKLLNISSNQ-FVGPIP--PLPLKSLQYLSLAEN-KFTGEIPDFLSGAC 293 (768)
T ss_dssp TTCCSCCEEECCSSC-CCSCHH-HHTTTCSSCCEEECCSSC-CEESCC--CCCCTTCCEEECCSS-EEEESCCCCSCTTC
T ss_pred ccCCCCCEEECcCCc-CCCccc-HHHhcCCCCCEEECCCCc-ccCccC--ccccCCCCEEECcCC-ccCCccCHHHHhhc
Confidence 456788888888773 443322 233478888888888753 221100 114566777766663 22211111111223
Q ss_pred ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhH-HHHhhccCCccEEEecCCCCC--CchhHHHH-----
Q 014524 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDS-FCSIATLAKLESLVMVGCPCV--DDTGLRFL----- 244 (423)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l----- 244 (423)
++|++|+++++ .+....... ...+++|+.|++++|.+.... ...+..+++|++|+++++... ....+..+
T Consensus 294 ~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 294 DTLTGLDLSGN-HFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TTCSEEECCSS-EEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred CcCCEEECcCC-cCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 55666666554 222111111 124555555555555443221 122444555555555543210 00111111
Q ss_pred -----------------H-hcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEE
Q 014524 245 -----------------E-SGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAI 306 (423)
Q Consensus 245 -----------------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 306 (423)
. ..+++|+.|++.++. +... +...+..+++|+.|+++++. +.......+..+++|+.|
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGK-IPPTLSNCSELVSLHLSFNY--LSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEE-CCGGGGGCTTCCEEECCSSE--EESCCCGGGGGCTTCCEE
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCc-cccc-cCHHHhcCCCCCEEECcCCc--ccCcccHHHhcCCCCCEE
Confidence 0 014567777777653 2211 22234568999999999987 565666678899999999
Q ss_pred EccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEec
Q 014524 307 TMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIE 386 (423)
Q Consensus 307 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 386 (423)
++++|.+.......+. .+++|++|+++++. ++... ......+++|+.|++++|. ++......+. .+++|+.|+++
T Consensus 448 ~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~-~l~~L~~L~L~ 522 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELM-YVKTLETLILDFND-LTGEI-PSGLSNCTNLNWISLSNNR-LTGEIPKWIG-RLENLAILKLS 522 (768)
T ss_dssp ECCSSCCCSCCCGGGG-GCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECCSSC-CCSCCCGGGG-GCTTCCEEECC
T ss_pred ECCCCcccCcCCHHHc-CCCCceEEEecCCc-ccCcC-CHHHhcCCCCCEEEccCCc-cCCcCChHHh-cCCCCCEEECC
Confidence 9999987654444444 78999999999986 54322 2223578999999999964 4433333333 58999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 014524 387 SCNMITEKGLYQLGSFCLRLEEIDLTDC 414 (423)
Q Consensus 387 ~c~~i~~~~~~~l~~~~~~L~~L~l~~c 414 (423)
+|. ++......+. .+++|+.|++++|
T Consensus 523 ~N~-l~~~~p~~l~-~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 523 NNS-FSGNIPAELG-DCRSLIWLDLNTN 548 (768)
T ss_dssp SSC-CEEECCGGGG-GCTTCCEEECCSS
T ss_pred CCc-ccCcCCHHHc-CCCCCCEEECCCC
Confidence 997 6543333333 7999999999995
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=4.6e-22 Score=184.25 Aligned_cols=228 Identities=14% Similarity=0.066 Sum_probs=90.1
Q ss_pred hCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCC
Q 014524 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (423)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 199 (423)
.+++|++|+++++ .+.......+..+++|++|+++++ .++..... ....+++|++|+++++ .+.......+ ..++
T Consensus 78 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~ 152 (477)
T 2id5_A 78 NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDY-MFQDLYNLKSLEVGDN-DLVYISHRAF-SGLN 152 (477)
T ss_dssp TCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEEECCT-TCCEECTTSS-TTCT
T ss_pred CCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCC-ccccCChh-HccccccCCEEECCCC-ccceeChhhc-cCCC
Confidence 4455555555542 233222222344555555555552 22221111 1123455555555543 2221111111 2345
Q ss_pred CCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCce
Q 014524 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (423)
+|+.|++++|.+.......+..+++|+.|++.++. +.......+ ..+++|+.|++.++......... . ....+|+.
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~-~-~~~~~L~~ 228 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSF-KRLYRLKVLEISHWPYLDTMTPN-C-LYGLNLTS 228 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCS-CSCTTCCEEEEECCTTCCEECTT-T-TTTCCCSE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhc-ccCcccceeeCCCCccccccCcc-c-ccCccccE
Confidence 55555555554444333344445555555555431 111110011 12455555555543322211100 0 01224555
Q ss_pred eccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEec
Q 014524 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDL 359 (423)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 359 (423)
|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|+++++. ++...... ...+++|+.|++
T Consensus 229 L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L 303 (477)
T 2id5_A 229 LSITHCN--LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH-ELLRLQEIQLVGGQ-LAVVEPYA-FRGLNYLRVLNV 303 (477)
T ss_dssp EEEESSC--CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT-TCTTCCEEECCSSC-CSEECTTT-BTTCTTCCEEEC
T ss_pred EECcCCc--ccccCHHHhcCccccCeeECCCCcCCccChhhcc-ccccCCEEECCCCc-cceECHHH-hcCcccCCEEEC
Confidence 5555543 3322223344455555555555544332222121 34455555555443 32211111 124455555555
Q ss_pred CC
Q 014524 360 TC 361 (423)
Q Consensus 360 ~~ 361 (423)
++
T Consensus 304 ~~ 305 (477)
T 2id5_A 304 SG 305 (477)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1.8e-20 Score=168.84 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=60.0
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
.+++|++|+++++. +....... ...+++|++|+++++ .+.......+..+++|++|+++++ .++... ..+...++
T Consensus 67 ~l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~ 141 (390)
T 3o6n_A 67 SFRQVELLNLNDLQ-IEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLP-RGIFHNTP 141 (390)
T ss_dssp HCCCCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred ccccCcEEECCCCc-ccccChhh-ccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCC-ccCcCC-HHHhcCCC
Confidence 34566666666552 22211111 124566666666652 233333333455666666666653 333211 11123356
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
+|++|+++++ .+....... ...+++|+.|++++|.+... .+..+++|++|++++
T Consensus 142 ~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 142 KLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp TCCEEECCSS-CCCBCCTTT-TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred CCcEEECCCC-ccCccChhh-ccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence 6666666654 232221111 12456666666666654432 133355555555554
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=7.1e-21 Score=175.34 Aligned_cols=309 Identities=12% Similarity=0.041 Sum_probs=190.0
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
..++|++|+++++. +...... ....+++|++|+++++..........+..+++|++|+++++ .++......+ ..++
T Consensus 28 l~~~l~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNS-IAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF-NGLA 103 (455)
T ss_dssp CCTTCCEEECCSSC-CCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT-TTCT
T ss_pred CCCccCEEEecCCc-cCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhc-cCcc
Confidence 44789999999874 4332111 22378999999999854322333445777999999999985 4544322222 3489
Q ss_pred cccccccccccccchhhHHH-HHhcCCCCcEEeccCcccChhHHHH-hhccCCccEEEecCCCCCCchhHHHHHh-cCCC
Q 014524 174 NLERLSLKWCMEISDLGIDL-LCKKCLDLKSLDVSYLKLTNDSFCS-IATLAKLESLVMVGCPCVDDTGLRFLES-GCPL 250 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~ 250 (423)
+|++|+++++ .+....+.. ....+++|+.|++++|.+....... +..+++|++|+++++. +.......+.. ..++
T Consensus 104 ~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccc
Confidence 9999999988 555433322 2346899999999999776654433 6789999999999853 22211111111 0134
Q ss_pred CceEecCCCcccCcchH---H--H--HHHhCCCCceeccCCCcccchHHHHHHhh-------------------------
Q 014524 251 LKTIFVSRCKFVSSTGL---I--S--VIRGHSGLLQLDAGHCFSELSTTLLHHMR------------------------- 298 (423)
Q Consensus 251 L~~L~l~~~~~~~~~~~---~--~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------------------- 298 (423)
|+.|++.++. +..... . . ....+++|+.|+++++. +.......+.
T Consensus 182 L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 182 FTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp EEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccCc-ccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccch
Confidence 4455544432 111000 0 0 00112345555554443 2222222111
Q ss_pred --------------cCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCC
Q 014524 299 --------------DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHS 364 (423)
Q Consensus 299 --------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (423)
..++|+.|++++|.+.......+ ..+++|++|+++++. ++...... ...+++|+.|++++| .
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N-~ 334 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQN-F 334 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCCc-ccccChhH-hcCcccCCEEECCCC-c
Confidence 13578888888887665433333 377899999999876 65432222 246899999999986 5
Q ss_pred CCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 365 ITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 365 l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
++......+ ..+++|+.|++++|. ++......+. .+++|++|++++ ++++.
T Consensus 335 l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~-N~l~~ 385 (455)
T 3v47_A 335 LGSIDSRMF-ENLDKLEVLDLSYNH-IRALGDQSFL-GLPNLKELALDT-NQLKS 385 (455)
T ss_dssp CCEECGGGG-TTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCS-SCCSC
T ss_pred cCCcChhHh-cCcccCCEEECCCCc-ccccChhhcc-ccccccEEECCC-Ccccc
Confidence 544333333 358999999999987 7654333343 789999999999 67765
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=7.9e-22 Score=188.38 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=29.6
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCCh-HHHHHhhcCCCCcEEecCCC
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD-REAAALSFASGLKEVKLDKC 157 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 157 (423)
.+++|++|+++++. +....... ...+++|++|+++++. +.. .....+.++++|++|+++++
T Consensus 102 ~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 102 GLTSLENLVAVETK-LASLESFP-IGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TCTTCCEEECTTSC-CCCSSSSC-CTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CcccCCEEEccCCc-cccccccc-cCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCC
Confidence 44555555555542 11100000 2245666666666532 322 11234556777777777763
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=3.2e-21 Score=178.59 Aligned_cols=301 Identities=17% Similarity=0.121 Sum_probs=191.5
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
..+++++|+++++. ++...... ...+++|++|+++++ .+.......+..+++|++|+++++ .++..... ....++
T Consensus 30 ~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLGKNR-IKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLG-VFTGLS 104 (477)
T ss_dssp CCTTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTT-SSTTCT
T ss_pred CCCCCcEEECCCCc-cceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcc-cccCCC
Confidence 34678888888763 33221111 236788999999873 455554556777889999999884 44432211 223478
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCce
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (423)
+|++|+++++ .+...... ....+++|+.|++++|.+.......+..+++|++|++.++ .+.......+. .+++|+.
T Consensus 105 ~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~ 180 (477)
T 2id5_A 105 NLTKLDISEN-KIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALS-HLHGLIV 180 (477)
T ss_dssp TCCEEECTTS-CCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHT-TCTTCCE
T ss_pred CCCEEECCCC-ccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhc-ccCCCcE
Confidence 8999999876 34332211 2246789999999988776655556677889999999875 44443333343 4889999
Q ss_pred EecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEee
Q 014524 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (423)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (423)
|++.++. +..... ..+..+++|+.|+++++.. . ...........+|+.|++++|.+.......+. .+++|+.|++
T Consensus 181 L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~~~~-~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 255 (477)
T 2id5_A 181 LRLRHLN-INAIRD-YSFKRLYRLKVLEISHWPY-L-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR-HLVYLRFLNL 255 (477)
T ss_dssp EEEESCC-CCEECT-TCSCSCTTCCEEEEECCTT-C-CEECTTTTTTCCCSEEEEESSCCCSCCHHHHT-TCTTCCEEEC
T ss_pred EeCCCCc-CcEeCh-hhcccCcccceeeCCCCcc-c-cccCcccccCccccEEECcCCcccccCHHHhc-CccccCeeEC
Confidence 9988752 332211 1223468899999888753 2 22222233345899999998887765544444 7789999999
Q ss_pred ccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
+++. ++..... ....+++|+.|++++| .++......+. .+++|+.|++++|. ++......+ ..+++|+.|++++
T Consensus 256 s~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~ 329 (477)
T 2id5_A 256 SYNP-ISTIEGS-MLHELLRLQEIQLVGG-QLAVVEPYAFR-GLNYLRVLNVSGNQ-LTTLEESVF-HSVGNLETLILDS 329 (477)
T ss_dssp CSSC-CCEECTT-SCTTCTTCCEEECCSS-CCSEECTTTBT-TCTTCCEEECCSSC-CSCCCGGGB-SCGGGCCEEECCS
T ss_pred CCCc-CCccChh-hccccccCCEEECCCC-ccceECHHHhc-CcccCCEEECCCCc-CceeCHhHc-CCCcccCEEEccC
Confidence 8876 5532222 2246788999999885 44443222232 57889999999886 664332222 3678899999988
Q ss_pred C
Q 014524 414 C 414 (423)
Q Consensus 414 c 414 (423)
+
T Consensus 330 N 330 (477)
T 2id5_A 330 N 330 (477)
T ss_dssp S
T ss_pred C
Confidence 3
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=2.3e-21 Score=185.12 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=67.7
Q ss_pred HhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHH
Q 014524 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDRE 139 (423)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 139 (423)
.+..+++|++|+++++. ++...... ...+++|++|+++++. +.... +.....+++|++|+++++. +....
T Consensus 51 ~~~~l~~L~~L~Ls~n~-l~~i~~~~------~~~l~~L~~L~Ls~n~-l~~~~-p~~~~~l~~L~~L~L~~n~-l~~~~ 120 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCE-IETIEDKA------WHGLHHLSNLILTGNP-IQSFS-PGSFSGLTSLENLVAVETK-LASLE 120 (606)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTT------TTTCTTCCEEECTTCC-CCCCC-TTSSTTCTTCCEEECTTSC-CCCSS
T ss_pred hccCCccCcEEeCCCCc-ccccCHHH------hhchhhcCEeECCCCc-ccccC-hhhcCCcccCCEEEccCCc-ccccc
Confidence 35567778888887743 43321111 2466788888888764 32211 1112367888888888743 43333
Q ss_pred HHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccc
Q 014524 140 AAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWC 183 (423)
Q Consensus 140 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (423)
...+..+++|++|+++++ .++...+......+++|++|+++++
T Consensus 121 ~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp SSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred ccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence 233667888888888884 4443222233445888999988876
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.1e-21 Score=186.06 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=51.5
Q ss_pred hhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHH
Q 014524 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (423)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 140 (423)
+..+++|++|+++++. ++...... ...+++|++|+++++. ++.... .....+++|++|+++++ .+.....
T Consensus 48 ~~~l~~L~~L~Ls~n~-i~~i~~~~------~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~ 117 (570)
T 2z63_A 48 FFSFPELQVLDLSRCE-IQTIEDGA------YQSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVET-NLASLEN 117 (570)
T ss_dssp TTTCSSCCEEECTTCC-CCEECTTT------TTTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTS-CCCCSTT
T ss_pred hhCCCCceEEECCCCc-CCccCccc------ccCchhCCEEeCcCCc-CCccCH-hhhcCcccccccccccc-ccccCCC
Confidence 3445566666666532 32211111 2345666666666552 221110 11124566666666652 2332222
Q ss_pred HHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccc
Q 014524 141 AALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWC 183 (423)
Q Consensus 141 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (423)
..+..+++|++|+++++ .++...+......+++|++|+++++
T Consensus 118 ~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred ccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCC
Confidence 22555666666666663 3332111112233666777776655
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=167.82 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=57.9
Q ss_pred HhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChH-
Q 014524 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDR- 138 (423)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~- 138 (423)
.+..+++|++|+++++. ++...... ...+++|++|+++++. ++. ++.. .+++|++|+++++ .+...
T Consensus 40 ~~~~l~~L~~L~Ls~n~-l~~~~~~~------~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~L~~N-~l~~~~ 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNR-IQYLDISV------FKFNQELEYLDLSHNK-LVK--ISCH--PTVNLKHLDLSFN-AFDALP 106 (520)
T ss_dssp HHTTCTTCCEEECCSSC-CCEEEGGG------GTTCTTCCEEECCSSC-CCE--EECC--CCCCCSEEECCSS-CCSSCC
T ss_pred hccccccccEEecCCCc-cCCcChHH------hhcccCCCEEecCCCc-eee--cCcc--ccCCccEEeccCC-cccccc
Confidence 44566777777777643 43321111 2456777777777663 321 1111 5677777777763 33331
Q ss_pred HHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccc--cccccccc
Q 014524 139 EAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNL--ERLSLKWC 183 (423)
Q Consensus 139 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~ 183 (423)
....+..+++|++|+++++ .++...+ ..+++| ++|++.++
T Consensus 107 ~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTT-HLEKSSV----LPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCGGGGGCTTCCEEEEEES-SCCGGGG----GGGTTSCEEEEEEEEC
T ss_pred chhhhccCCcceEEEecCc-ccchhhc----cccccceeeEEEeecc
Confidence 1234666777788777773 4554322 234555 66666654
No 29
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=1.4e-17 Score=148.09 Aligned_cols=247 Identities=13% Similarity=0.110 Sum_probs=135.4
Q ss_pred HHHHHHhCCCccEEEccCcCCCChHHH----HHhhcCC-CCcEEecCCCCCCChHHHHHHHH---hC-cccccccccccc
Q 014524 114 LEMLARACPLLESVDLSYCCGFGDREA----AALSFAS-GLKEVKLDKCLNVTDVGLAKIAV---RC-VNLERLSLKWCM 184 (423)
Q Consensus 114 ~~~l~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~---~~-~~L~~L~l~~~~ 184 (423)
++.+....++|++|+++++ .+++.+. ..+..++ +|++|+++++ .+++.....+.. .. ++|++|+++++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 90 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN- 90 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-
T ss_pred HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-
Confidence 4444544556888888874 3555444 4555677 7888888874 555544433333 22 77888888776
Q ss_pred ccchhhHHHH---HhcC-CCCcEEeccCcccChhHHHHhhc-----cCCccEEEecCCCCCCchhHHHHH---hcCC-CC
Q 014524 185 EISDLGIDLL---CKKC-LDLKSLDVSYLKLTNDSFCSIAT-----LAKLESLVMVGCPCVDDTGLRFLE---SGCP-LL 251 (423)
Q Consensus 185 ~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~---~~~~-~L 251 (423)
.+++.+...+ ...+ ++|+.|++++|.+.+.....+.. .++|++|+++++ .+.+.+...+. ...+ +|
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccc
Confidence 4554433332 2234 67888888887666555444332 247777777764 44433333222 2233 77
Q ss_pred ceEecCCCcccCcchHH---HHHHhC-CCCceeccCCCcccchHH----HHHHhhc-CCcccEEEccCccCChhhHHH--
Q 014524 252 KTIFVSRCKFVSSTGLI---SVIRGH-SGLLQLDAGHCFSELSTT----LLHHMRD-LKNLEAITMDGARISDSCFQT-- 320 (423)
Q Consensus 252 ~~L~l~~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~~~-- 320 (423)
++|+++++ .+++.+.. .....+ ++|+.|+++++. +++. ....+.. .++|+.|++++|.+++.+...
T Consensus 170 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 170 NSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL--LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp CEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred cEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 77777764 34333332 223334 367777777665 4432 2233333 346777777777666544332
Q ss_pred -HHhcCCCccEEeeccCC--CCChHHHHHHHhc---CCCCcEEecCCCCCCCHH
Q 014524 321 -ISFNCKSLVEIGLSKCL--GVTNTGITQLVSG---CVNLKTIDLTCCHSITDD 368 (423)
Q Consensus 321 -l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~ 368 (423)
+...+++|++|+++++. .++...+..+... +++|+.|+++++ .+.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 22345667777766653 3445544444433 345556666663 34443
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.8e-21 Score=183.39 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=50.3
Q ss_pred HhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCCh-H
Q 014524 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD-R 138 (423)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~ 138 (423)
.+..+++|++|+++++. ++...... ...+++|++|+++++. +....... ...+++|++|+++++. +.. .
T Consensus 71 ~~~~l~~L~~L~L~~n~-l~~~~~~~------~~~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~ 140 (570)
T 2z63_A 71 AYQSLSHLSTLILTGNP-IQSLALGA------FSGLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNL-IQSFK 140 (570)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTT------TTTCTTCCEEECTTSC-CCCSTTCS-CTTCTTCCEEECCSSC-CCCCC
T ss_pred cccCchhCCEEeCcCCc-CCccCHhh------hcCccccccccccccc-cccCCCcc-ccccccccEEecCCCc-cceec
Confidence 35567788888887743 33322111 3456788888887763 22110000 2357788888887742 332 1
Q ss_pred HHHHhhcCCCCcEEecCCC
Q 014524 139 EAAALSFASGLKEVKLDKC 157 (423)
Q Consensus 139 ~~~~l~~~~~L~~L~l~~~ 157 (423)
....+..+++|++|+++++
T Consensus 141 lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCGGGGGCTTCCEEECTTS
T ss_pred ChhhhcccCCCCEEeCcCC
Confidence 1234666788888888774
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=3.5e-19 Score=160.38 Aligned_cols=306 Identities=15% Similarity=0.152 Sum_probs=213.2
Q ss_pred HHHhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCCh
Q 014524 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD 137 (423)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 137 (423)
..++..+++|++|+++++. +....... ...+++|++|+++++. +.... +.....+++|++|+++++ .+..
T Consensus 62 ~~~~~~l~~L~~L~L~~n~-i~~~~~~~------~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~ 131 (390)
T 3o6n_A 62 AALLDSFRQVELLNLNDLQ-IEEIDTYA------FAYAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERN-DLSS 131 (390)
T ss_dssp THHHHHCCCCSEEECTTSC-CCEECTTT------TTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCC
T ss_pred hhHhcccccCcEEECCCCc-ccccChhh------ccCCCCcCEEECCCCC-CCcCC-HHHhcCCCCCCEEECCCC-ccCc
Confidence 4456778999999999853 44332211 3567999999999874 33211 112246899999999984 4554
Q ss_pred HHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHH
Q 014524 138 REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC 217 (423)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 217 (423)
.....+..+++|++|+++++ .++..... ....+++|++|+++++ .++... ...+++|+.|+++++.+..
T Consensus 132 l~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~l~~---- 200 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNLLST---- 200 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSCCSE----
T ss_pred CCHHHhcCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCC-cCCccc----cccccccceeecccccccc----
Confidence 33334567999999999985 44433222 2244899999999987 454433 2467999999999986653
Q ss_pred HhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHh
Q 014524 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (423)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (423)
+...++|++|+++++. +..... ...++|+.|++.++ .+.+. .....+++|+.|+++++. +.......+
T Consensus 201 -~~~~~~L~~L~l~~n~-l~~~~~----~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~--l~~~~~~~~ 268 (390)
T 3o6n_A 201 -LAIPIAVEELDASHNS-INVVRG----PVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNE--LEKIMYHPF 268 (390)
T ss_dssp -EECCSSCSEEECCSSC-CCEEEC----CCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC--CCEEESGGG
T ss_pred -cCCCCcceEEECCCCe-eeeccc----cccccccEEECCCC-CCccc---HHHcCCCCccEEECCCCc--CCCcChhHc
Confidence 2346789999999853 332211 22579999999986 34443 234568999999999987 555555677
Q ss_pred hcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 014524 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSC 377 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 377 (423)
..+++|+.|++++|.+..... ....+++|++|+++++. ++.. ......+++|+.|++++|. ++... ...+
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~ 338 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNH-LLHV--ERNQPQFDRLENLYLDHNS-IVTLK----LSTH 338 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEEC--SSSCCTTCCEEECCSSC-CCCC--GGGHHHHTTCSEEECCSSC-CCCCC----CCTT
T ss_pred cccccCCEEECCCCcCcccCc--ccCCCCCCCEEECCCCc-ceec--CccccccCcCCEEECCCCc-cceeC----chhh
Confidence 889999999999998765321 12367999999999986 5532 1112357899999999964 44332 3358
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhcCCCCC
Q 014524 378 RGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~ 407 (423)
++|+.|++++++ ++......+....+...
T Consensus 339 ~~L~~L~l~~N~-~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 339 HTLKNLTLSHND-WDCNSLRALFRNVARPA 367 (390)
T ss_dssp CCCSEEECCSSC-EEHHHHHHHTTTCCTTT
T ss_pred ccCCEEEcCCCC-ccchhHHHHHHHHHhhc
Confidence 999999999998 88888877776655544
No 32
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.8e-17 Score=147.39 Aligned_cols=259 Identities=10% Similarity=0.081 Sum_probs=166.6
Q ss_pred EEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHH---HHHHhCc-cccccccccccccchhhHHHHHh---c-C
Q 014524 127 VDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLA---KIAVRCV-NLERLSLKWCMEISDLGIDLLCK---K-C 198 (423)
Q Consensus 127 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~---~-~ 198 (423)
++++. ..+.......+...++|++|+++++ .+++.... .....++ +|++|+++++ .+++.+...+.. . +
T Consensus 3 ~~ls~-n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTL-HPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCC-CTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred ccccc-ccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 34444 3344444444444566999999985 56654442 3334467 8999999987 666655444432 2 3
Q ss_pred CCCcEEeccCcccChhHHHHhh----cc-CCccEEEecCCCCCCchhHHHHHh---c-CCCCceEecCCCcccCcchHHH
Q 014524 199 LDLKSLDVSYLKLTNDSFCSIA----TL-AKLESLVMVGCPCVDDTGLRFLES---G-CPLLKTIFVSRCKFVSSTGLIS 269 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~~l~~---~-~~~L~~L~l~~~~~~~~~~~~~ 269 (423)
++|++|++++|.+.+.....+. .+ ++|++|+++++ .+++.....+.. . +++|++|+++++ .+.+.+...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHH
Confidence 8999999999977665554443 34 78999999885 455544444433 2 368999999875 455544443
Q ss_pred H---HHhCC-CCceeccCCCcccchHHHH----HHhhcC-CcccEEEccCccCChhhHHHHH----hcCCCccEEeeccC
Q 014524 270 V---IRGHS-GLLQLDAGHCFSELSTTLL----HHMRDL-KNLEAITMDGARISDSCFQTIS----FNCKSLVEIGLSKC 336 (423)
Q Consensus 270 ~---~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~~~~l~----~~~~~L~~L~l~~~ 336 (423)
+ ....+ +|+.|+++++. +++... ..+..+ ++|+.|++++|.+++.+...+. ...++|++|+++++
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNN--LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCCC--CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 3 33344 88888888886 444333 344455 4888888888887775554333 22468888888887
Q ss_pred CCCChHH---HHHHHhcCCCCcEEecCCCC--CCCHHHHHHHHhh---CCCccEEEeccCCCCCHH
Q 014524 337 LGVTNTG---ITQLVSGCVNLKTIDLTCCH--SITDDAISAIADS---CRGLVCLKIESCNMITEK 394 (423)
Q Consensus 337 ~~~~~~~---~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~~---~~~L~~L~l~~c~~i~~~ 394 (423)
. +++.+ +..+...+++|+.|++++|. .+++..+..+... +++|+.|+++++. +.+.
T Consensus 236 ~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 236 C-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp C-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred C-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence 6 66643 34444567888888888764 4677777766654 4567777888876 6554
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=8.8e-20 Score=173.20 Aligned_cols=282 Identities=12% Similarity=0.078 Sum_probs=117.8
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
.+++|++|+++++. +....... ...+++|++|+++++ .+.......+..+++|++|+++++ .++... ..+...++
T Consensus 73 ~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~ 147 (597)
T 3oja_B 73 SFRQVELLNLNDLQ-IEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLP-RGIFHNTP 147 (597)
T ss_dssp HCCCCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred cCCCCcEEECCCCC-CCCCChHH-hcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC-CCCCCC-HHHhccCC
Confidence 34556666665542 22111111 124556666666552 233333333445566666666653 333211 11122355
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCce
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (423)
+|++|+++++ .+.......+ ..+++|+.|++++|.+... .+..+++|+.|+++++ .+... ...++|+.
T Consensus 148 ~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n-~l~~l------~~~~~L~~ 215 (597)
T 3oja_B 148 KLTTLSMSNN-NLERIEDDTF-QATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN-LLSTL------AIPIAVEE 215 (597)
T ss_dssp TCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS-CCSEE------ECCTTCSE
T ss_pred CCCEEEeeCC-cCCCCChhhh-hcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC-ccccc------cCCchhhe
Confidence 6666666554 2322211111 2455666666666644432 1333555555555542 22211 11334555
Q ss_pred EecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEee
Q 014524 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (423)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (423)
|+++++. +..... ...++|+.|+++++. +++ ...+..+++|+.|++++|.+.......+. .+++|+.|++
T Consensus 216 L~ls~n~-l~~~~~----~~~~~L~~L~L~~n~--l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L 285 (597)
T 3oja_B 216 LDASHNS-INVVRG----PVNVELTILKLQHNN--LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYI 285 (597)
T ss_dssp EECCSSC-CCEEEC----SCCSCCCEEECCSSC--CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEEC
T ss_pred eeccCCc-cccccc----ccCCCCCEEECCCCC--CCC--ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEEC
Confidence 5554431 111100 012345555555544 222 13344455555555555544433222222 4455555555
Q ss_pred ccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
+++. ++.. ......+|+|+.|++++|. ++.. ...+ ..+++|+.|++++|. ++... ...+++|+.|++++
T Consensus 286 s~N~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i-~~~~-~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 286 SNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHV-ERNQ-PQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSH 354 (597)
T ss_dssp TTSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCC-GGGH-HHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCS
T ss_pred CCCC-CCCC--CcccccCCCCcEEECCCCC-CCcc-Cccc-ccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeC
Confidence 5543 3221 1111234555555555532 2210 0111 134555555555554 33221 12345555555555
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=7.7e-19 Score=165.73 Aligned_cols=183 Identities=18% Similarity=0.160 Sum_probs=123.7
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
..++|++|+++++. ++...... ...+++|++|+++++ .+.......+..+++|++|+++++ .++......+ ..++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGD-LRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWF-GPLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSST-TSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHH-TTCT
T ss_pred CCCCccEEECcCCc-cCccChhh-hhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccCHHHh-ccCC
Confidence 34789999999884 43321111 237899999999984 465555556778999999999995 5655443334 4599
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcc-cChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCc
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLK-LTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (423)
+|++|+++++ .+...........+++|+.|++++|. +.......+..+++|++|++.++ .+.......+. .+++|+
T Consensus 99 ~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLK-SIRDIH 175 (549)
T ss_dssp TCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTT-TCSEEE
T ss_pred CCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhh-ccccCc
Confidence 9999999987 45432222233478999999999986 44333346778999999999985 34332222233 378999
Q ss_pred eEecCCCcccCcchHHHHHHhCCCCceeccCCCc
Q 014524 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCF 286 (423)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (423)
+|++..+. ... ....+...+++|+.|+++++.
T Consensus 176 ~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 176 HLTLHLSE-SAF-LLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEECSB-STT-HHHHHHHSTTTBSEEEEESCB
T ss_pred eEecccCc-ccc-cchhhHhhcccccEEEccCCc
Confidence 99998753 222 122334457888888887765
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1.1e-19 Score=175.92 Aligned_cols=330 Identities=15% Similarity=0.129 Sum_probs=157.4
Q ss_pred CCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhh
Q 014524 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (423)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (423)
+++++|+++++. ++...... ...+++|++|+++++. +..... .....+++|++|+++++ .+.......+.
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~------~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAAN------FTRYSQLTSLDVGFNT-ISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGG------GGGGTTCSEEECCSSC-CCCCCT-THHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEECCCCC-CCCcCHHH------HhCCCcCcEEECCCCc-cCccCH-HHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 457777777632 33221111 2345677777777653 222111 12235677777777763 34333333455
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhh--cc
Q 014524 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA--TL 222 (423)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~ 222 (423)
.+++|++|+++++ .++...... ...+++|++|+++++ .+.......+ ..+++|+.|++++|.+.......+. .+
T Consensus 95 ~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 95 FCTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TCTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred cCCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCCcccccCHHHhhcccc
Confidence 6677777777763 333221111 123667777777665 2322211111 2456677777776655443333332 34
Q ss_pred CCccEEEecCCCCCCchhHHHHHh--------------------------cCCCCceEecCCCcccCcchHHHHHHhC--
Q 014524 223 AKLESLVMVGCPCVDDTGLRFLES--------------------------GCPLLKTIFVSRCKFVSSTGLISVIRGH-- 274 (423)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~l~~--------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~-- 274 (423)
++|++|+++++. +.......+.. ..++|+.|++.++ .+.......+ ..+
T Consensus 171 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~ 247 (680)
T 1ziw_A 171 SSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTF-LGLKW 247 (680)
T ss_dssp CEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTTTT-GGGGG
T ss_pred ccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-cccccChhHh-hccCc
Confidence 666666666542 21111111111 1255666666553 2222111111 112
Q ss_pred CCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHH-------H
Q 014524 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQ-------L 347 (423)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-------~ 347 (423)
++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|+.|+++++..-....... .
T Consensus 248 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 248 TNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp SCCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCCCEEECCCCC--cCccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhh
Confidence 346777766665 3333334456667777777777765543322232 56677777776542111110000 1
Q ss_pred HhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHH--HHHH-hcCCCCCEEeccCCCCCC
Q 014524 348 VSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGL--YQLG-SFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 348 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~--~~l~-~~~~~L~~L~l~~c~~i~ 418 (423)
...+++|+.|++++| .++......+ ..+++|+.|++++|. ++...+ ..+. ...++|+.|++++ ++++
T Consensus 325 ~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-~~~~~l~~~~f~~~~~~~L~~L~L~~-n~l~ 394 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDN-DIPGIKSNMF-TGLINLKYLSLSNSF-TSLRTLTNETFVSLAHSPLHILNLTK-NKIS 394 (680)
T ss_dssp TTTCTTCCEEECCSC-CBCCCCTTTT-TTCTTCCEEECTTCB-SCCCEECTTTTGGGTTSCCCEEECTT-SCCC
T ss_pred cccCCCCCEEECCCC-ccCCCChhHh-ccccCCcEEECCCCc-hhhhhcchhhhcccccCcCceEECCC-CCCC
Confidence 235677777777764 3332211112 246777888777764 211000 0011 0235788888877 4444
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=162.90 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=75.7
Q ss_pred CCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhh
Q 014524 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (423)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (423)
++++.|+++++. +.......+ ..+++|++|+++++. ++.... .....+++|++|+++++ .+.... ..
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~------~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp--~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDI------LSLSKLRILIISHNR-IQYLDI-SVFKFNQELEYLDLSHN-KLVKIS--CH- 87 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHH------TTCTTCCEEECCSSC-CCEEEG-GGGTTCTTCCEEECCSS-CCCEEE--CC-
T ss_pred ccccEEECCCCc-ccccChhhc------cccccccEEecCCCc-cCCcCh-HHhhcccCCCEEecCCC-ceeecC--cc-
Confidence 678888888753 443322222 456788888888773 332111 11236788888888873 344211 11
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC--cEEeccCccc
Q 014524 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL--KSLDVSYLKL 211 (423)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 211 (423)
.+++|++|+++++ .++...+......+++|++|+++++ .+....+ ..+++| +.|++++|.+
T Consensus 88 ~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT-HLEKSSV----LPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES-SCCGGGG----GGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCc-ccchhhc----cccccceeeEEEeecccc
Confidence 6788888888874 4443222222344788888888876 4544322 345666 8888877655
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=3.9e-20 Score=176.58 Aligned_cols=329 Identities=13% Similarity=0.151 Sum_probs=163.5
Q ss_pred HhhcCCCcceEeecCCCCCChh-------------HHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccE
Q 014524 60 LLDKYPYIKTLDLSVCPRVNDG-------------TVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLES 126 (423)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~-------------~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 126 (423)
.+..+++|++|+++++. ++.. ....++..+....+++|++|+++++.-.. . ++.....+++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~-~p~~l~~l~~L~~ 277 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-K-LPTFLKALPEMQL 277 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-S-CCTTTTTCSSCCE
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-c-ChHHHhcCCCCCE
Confidence 46678899999999854 5541 11113322111267888999988774221 1 1122236788888
Q ss_pred EEccCcCCCCh-HHHHHhhcC------CCCcEEecCCCCCCChHHHHH--HHHhCccccccccccccccc-hhhHHHHHh
Q 014524 127 VDLSYCCGFGD-REAAALSFA------SGLKEVKLDKCLNVTDVGLAK--IAVRCVNLERLSLKWCMEIS-DLGIDLLCK 196 (423)
Q Consensus 127 L~l~~~~~~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 196 (423)
|+++++..+.. .....+..+ ++|++|+++++ .++. +.. ....+++|++|+++++ .+. ... ...
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N-~l~g~ip---~~~ 350 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYN-QLEGKLP---AFG 350 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSC-CCEEECC---CCE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCC-cCccchh---hhC
Confidence 88887443554 344444443 78888888874 4442 222 3445777888887766 333 211 112
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCC-ccEEEecCCC------------------------CCCchhHHHHH------
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAK-LESLVMVGCP------------------------CVDDTGLRFLE------ 245 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~------------------------~~~~~~~~~l~------ 245 (423)
.+++|+.|++++|.+. .....+..+++ |++|+++++. .+.......+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 4455555555555333 11122334444 5555555432 11110000000
Q ss_pred hcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhh-------cCCcccEEEccCccCChhhH
Q 014524 246 SGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR-------DLKNLEAITMDGARISDSCF 318 (423)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~ 318 (423)
-.+++|+.|+++++ .+... ...+...+++|+.|+++++. +.......+. ++++|+.|++++|.+....
T Consensus 430 ~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~--l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp- 504 (636)
T 4eco_A 430 FKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM--LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS- 504 (636)
T ss_dssp CCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC--CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-
T ss_pred ccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC--CCCcCHHHhccccccccccCCccEEECcCCcCCccC-
Confidence 01345556666553 22211 11233345666666666654 2211011111 1226777777776655211
Q ss_pred HHHH-hcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCC-----CCCHHHHHHHHhhCCCccEEEeccCCCCC
Q 014524 319 QTIS-FNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH-----SITDDAISAIADSCRGLVCLKIESCNMIT 392 (423)
Q Consensus 319 ~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 392 (423)
..+. ..+++|++|+++++. ++. +......+++|+.|++++|. .+.......+. .+++|+.|++++|. ++
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~-l~ 579 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSND-IR 579 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSC-CC
T ss_pred hhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHh-cCCCCCEEECCCCc-CC
Confidence 1111 256677777777655 443 22223356777777775422 11211112222 46777777777766 43
Q ss_pred HHHHHHHHhcCCCCCEEeccC
Q 014524 393 EKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 393 ~~~~~~l~~~~~~L~~L~l~~ 413 (423)
..... ..++|+.|++++
T Consensus 580 ~ip~~----~~~~L~~L~Ls~ 596 (636)
T 4eco_A 580 KVNEK----ITPNISVLDIKD 596 (636)
T ss_dssp BCCSC----CCTTCCEEECCS
T ss_pred ccCHh----HhCcCCEEECcC
Confidence 21110 236777777777
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.73 E-value=1.6e-19 Score=174.66 Aligned_cols=213 Identities=14% Similarity=0.084 Sum_probs=116.7
Q ss_pred cCCCCcEEeccCcccChhHH-HHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSF-CSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHS 275 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 275 (423)
.+++|+.|++++|.+..... ..+..+++|++|+++++. +.......+ ..+++|+.|++.++...........+..++
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhh-hcCcccccchhccccccccccCCcccccCC
Confidence 44555666665554432111 233445566666665532 111100111 125666666666542111111112234467
Q ss_pred CCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHH-------HHhcCCCccEEeeccCCCCChHHHHHHH
Q 014524 276 GLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQT-------ISFNCKSLVEIGLSKCLGVTNTGITQLV 348 (423)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 348 (423)
+|+.|+++++. ++......+..+++|+.|++++|.+....... ....+++|+.|+++++. ++.... ...
T Consensus 481 ~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~ 556 (680)
T 1ziw_A 481 NLTILDLSNNN--IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV-EVF 556 (680)
T ss_dssp TCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT-TTT
T ss_pred CCCEEECCCCC--CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH-HHc
Confidence 78888887765 44333345667788888888888665421111 12366788888888765 542111 123
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 014524 349 SGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 349 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (423)
..+++|+.|+++++ .++..... ....+++|+.|++++|. ++......+...+++|+.|++++++..-
T Consensus 557 ~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 557 KDLFELKIIDLGLN-NLNTLPAS-VFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred ccccCcceeECCCC-CCCcCCHh-HhCCCCCCCEEECCCCc-CCccChhHhcccccccCEEEccCCCccc
Confidence 46788888888874 44422211 22357889999998886 6654444443357889999988855443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.4e-18 Score=165.01 Aligned_cols=303 Identities=15% Similarity=0.159 Sum_probs=211.6
Q ss_pred HHHhhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCCh
Q 014524 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD 137 (423)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 137 (423)
..++..+++|+.|+++++. ++...... ...+++|++|+++++. +.... +.....+++|++|+++++ .+..
T Consensus 68 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~------~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~ 137 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQ-IEEIDTYA------FAYAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERN-DLSS 137 (597)
T ss_dssp THHHHHCCCCSEEECTTSC-CCEECTTT------TTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCC
T ss_pred HHHHccCCCCcEEECCCCC-CCCCChHH------hcCCCCCCEEECCCCc-CCCCC-HHHHcCCCCCCEEEeeCC-CCCC
Confidence 4456778999999999854 54432211 3577999999999884 33211 112246899999999984 4554
Q ss_pred HHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHH
Q 014524 138 REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC 217 (423)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 217 (423)
.....+..+++|++|+++++ .++...... ...+++|+.|+++++ .+.... ...+++|+.|++++|.+..
T Consensus 138 l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~l~~---- 206 (597)
T 3oja_B 138 LPRGIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNLLST---- 206 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSCCSE----
T ss_pred CCHHHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCcccc----
Confidence 43334577999999999985 454432222 244899999999987 454433 2468999999999996653
Q ss_pred HhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHh
Q 014524 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (423)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (423)
+...++|+.|+++++. +.... ....++|+.|++.++. +++. .....+++|+.|+++++. +.......+
T Consensus 207 -l~~~~~L~~L~ls~n~-l~~~~----~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~--l~~~~~~~~ 274 (597)
T 3oja_B 207 -LAIPIAVEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNE--LEKIMYHPF 274 (597)
T ss_dssp -EECCTTCSEEECCSSC-CCEEE----CSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC--CCEEESGGG
T ss_pred -ccCCchhheeeccCCc-ccccc----cccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCCc--cCCCCHHHh
Confidence 3446789999999853 33221 1124789999999863 4443 234568999999999987 555556678
Q ss_pred hcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 014524 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSC 377 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 377 (423)
..+++|+.|++++|.+.... .....+++|+.|+++++. ++. +......+++|+.|++++|. ++... ...+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~L~Ls~N~-l~~--i~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~ 344 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHNS-IVTLK----LSTH 344 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEE--CSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSSC-CCCCC----CCTT
T ss_pred cCccCCCEEECCCCCCCCCC--cccccCCCCcEEECCCCC-CCc--cCcccccCCCCCEEECCCCC-CCCcC----hhhc
Confidence 88999999999999876532 122358999999999986 553 22222467999999999965 44322 3358
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhcCC
Q 014524 378 RGLVCLKIESCNMITEKGLYQLGSFCL 404 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l~~~~~ 404 (423)
++|+.|++++|+ ++......+.....
T Consensus 345 ~~L~~L~l~~N~-~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 345 HTLKNLTLSHND-WDCNSLRALFRNVA 370 (597)
T ss_dssp CCCSEEECCSSC-EEHHHHHHHTTTCC
T ss_pred CCCCEEEeeCCC-CCChhHHHHHHHHh
Confidence 999999999998 88777766654433
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=8.4e-21 Score=187.28 Aligned_cols=322 Identities=20% Similarity=0.115 Sum_probs=160.4
Q ss_pred CCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHh
Q 014524 64 YPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAAL 143 (423)
Q Consensus 64 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 143 (423)
.++++.|+++++. ++...... ...+++|++|+++++.....-. +.....+++|++|++++ ..+.......+
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~------~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~ 93 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASS------FPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGS-SKIYFLHPDAF 93 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSS------CSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTT-CCCCEECTTSS
T ss_pred CCCcCEEECCCCc-CCccChhH------CcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCC-CcCcccCHhHc
Confidence 3567888888743 44322111 3566788888887763221110 11123677888888877 33554444556
Q ss_pred hcCCCCcEEecCCCCCCChHHHH-HHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhcc
Q 014524 144 SFASGLKEVKLDKCLNVTDVGLA-KIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL 222 (423)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 222 (423)
..+++|++|+++++ .++...+. .....+++|++|+++++ .+...........+++|+.|++++|.+.......+..+
T Consensus 94 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 94 QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 67788888888774 34321111 11234677888888776 33332222223467788888888775544322233332
Q ss_pred --CCccEEEecCCCCCCchhHHHHHhcCC------CCceEecCCCcccCcchHHHH------------------------
Q 014524 223 --AKLESLVMVGCPCVDDTGLRFLESGCP------LLKTIFVSRCKFVSSTGLISV------------------------ 270 (423)
Q Consensus 223 --~~L~~L~l~~~~~~~~~~~~~l~~~~~------~L~~L~l~~~~~~~~~~~~~~------------------------ 270 (423)
++|+.|+++++.. .......+. .++ +|+.|+++++. +.......+
T Consensus 172 ~~~~L~~L~L~~n~l-~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 172 QGKTLSFFSLAANSL-YSRVSVDWG-KCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHCSSCCCEECCSBS-CCCCCCCCC-SSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred cCCccceEECCCCcc-ccccccchh-hcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceeccccccccccc
Confidence 5666666665321 110000000 011 25666665431 111000000
Q ss_pred -----------HHh--CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 271 -----------IRG--HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 271 -----------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
+.. .++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|+++++.
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNL 325 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCc--ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCC
Confidence 001 2466667666654 3333333455666777777777765543222222 56677777776654
Q ss_pred CCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 338 GVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
++..... ....+++|+.|++++| .++......+ ..+++|+.|++++|. ++.. ..+++|+.|++++
T Consensus 326 -l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~i------~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 326 -LGELYSS-NFYGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDNA-LTTI------HFIPSIPDIFLSG 390 (844)
T ss_dssp -CSCCCSC-SCSSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETCC-SCCC------SSCCSCSEEEEES
T ss_pred -CCccCHH-HhcCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCCC-CCcc------cCCCCcchhccCC
Confidence 3321111 1235566777777664 3322111111 235667777776665 4321 1245555555555
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=9.1e-19 Score=170.28 Aligned_cols=163 Identities=13% Similarity=0.182 Sum_probs=95.2
Q ss_pred HhhcCCCcceEeecCCCCCChh-------------HHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccE
Q 014524 60 LLDKYPYIKTLDLSVCPRVNDG-------------TVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLES 126 (423)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~-------------~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 126 (423)
.+..+++|+.|+++++. ++.. .-..++..+....+++|++|+++++..... ++.....+++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQS 519 (876)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCE
T ss_pred HHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCE
Confidence 46678899999998854 5441 001132221122678899999987742211 1122336788888
Q ss_pred EEccCcCCCCh-HHHHHhhc-------CCCCcEEecCCCCCCChHHHHH--HHHhCccccccccccccccchhhHHHHHh
Q 014524 127 VDLSYCCGFGD-REAAALSF-------ASGLKEVKLDKCLNVTDVGLAK--IAVRCVNLERLSLKWCMEISDLGIDLLCK 196 (423)
Q Consensus 127 L~l~~~~~~~~-~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 196 (423)
|+++++..+.. .....+.. +++|++|+++++ .++. +.. ....+++|+.|+++++ .+.. ++ ...
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~l~~L~~L~~L~Ls~N-~l~~--lp-~~~ 592 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--FPASASLQKMVKLGLLDCVHN-KVRH--LE-AFG 592 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--CCCHHHHTTCTTCCEEECTTS-CCCB--CC-CCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--cCChhhhhcCCCCCEEECCCC-Cccc--ch-hhc
Confidence 88887432554 33333333 458888888874 4542 222 3445788888888776 3442 22 223
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCC-ccEEEecCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAK-LESLVMVGC 233 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 233 (423)
.+++|+.|++++|.+. .....+..+++ |+.|+++++
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 5677777777777555 22234555666 777777664
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1.8e-19 Score=171.94 Aligned_cols=325 Identities=12% Similarity=0.112 Sum_probs=191.1
Q ss_pred cCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCch-hHHHHHHH-----hCCCccEEEccCcCCCC
Q 014524 63 KYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRY-RGLEMLAR-----ACPLLESVDLSYCCGFG 136 (423)
Q Consensus 63 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~ 136 (423)
.+++|++|+++++.-..... .. ...+++|++|+++++..++. .....+.. .+++|++|+++++ .+.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p-~~------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~ 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLP-TF------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCC-TT------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS
T ss_pred ccCCCCEEEecCCcCCccCh-HH------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC
Confidence 78899999999864322111 11 35678999999998853654 22222221 2489999999884 344
Q ss_pred hHH-HHHhhcCCCCcEEecCCCCCCC-hHHHHHHHHhCccccccccccccccchhhHHHHHhcCC---------------
Q 014524 137 DRE-AAALSFASGLKEVKLDKCLNVT-DVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL--------------- 199 (423)
Q Consensus 137 ~~~-~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------- 199 (423)
... ...+..+++|++|+++++ .++ ... ....+++|++|+++++ .+.. +......++
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip---~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYN-QLEGKLP---AFGSEIKLASLNLAYN-QITE--IPANFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSC-CCEEECC---CCEEEEEESEEECCSS-EEEE--CCTTSEEECTTCCEEECCSSCCSS
T ss_pred ccCchhhhccCCCCCEEeCcCC-cCccchh---hhCCCCCCCEEECCCC-cccc--ccHhhhhhcccCcEEEccCCcCcc
Confidence 211 125777888999988874 333 211 1223455666666554 2221 100011233
Q ss_pred -----------CCcEEeccCcccChhHHHHhh-------ccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcc
Q 014524 200 -----------DLKSLDVSYLKLTNDSFCSIA-------TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKF 261 (423)
Q Consensus 200 -----------~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 261 (423)
+|+.|++++|.+.......+. .+++|++|+++++ .+.... ..+...+++|+.|+++++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~N~- 468 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFP-KELFSTGSPLSSINLMGNM- 468 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCSSC-
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCCCC-
Confidence 455555555544433333333 4668999999985 343322 2234458999999999853
Q ss_pred cCcchHHHHHH-------hCCCCceeccCCCcccchHHHHHHhh--cCCcccEEEccCccCChhhHHHHHhcCCCccEEe
Q 014524 262 VSSTGLISVIR-------GHSGLLQLDAGHCFSELSTTLLHHMR--DLKNLEAITMDGARISDSCFQTISFNCKSLVEIG 332 (423)
Q Consensus 262 ~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 332 (423)
+...... ... .+++|+.|+++++. +. .....+. .+++|+.|++++|.+.. ....+. .+++|+.|+
T Consensus 469 l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N~--l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~-~l~~L~~L~ 542 (636)
T 4eco_A 469 LTEIPKN-SLKDENENFKNTYLLTSIDLRFNK--LT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL-NSSTLKGFG 542 (636)
T ss_dssp CSBCCSS-SSEETTEECTTGGGCCEEECCSSC--CC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCSSCCEEE
T ss_pred CCCcCHH-HhccccccccccCCccEEECcCCc--CC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh-cCCCCCEEE
Confidence 3321111 111 12389999999987 44 3444554 89999999999998776 222333 789999999
Q ss_pred eccCCC-----CChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHH----HHHHHhc-
Q 014524 333 LSKCLG-----VTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKG----LYQLGSF- 402 (423)
Q Consensus 333 l~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~----~~~l~~~- 402 (423)
++++.. +... +......+++|+.|++++|. ++.-. .. ..++|+.|++++|+ ++... ...+...
T Consensus 543 Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~ip-~~---~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~ 615 (636)
T 4eco_A 543 IRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSND-IRKVN-EK---ITPNISVLDIKDNP-NISIDLSYVCPYIEAGM 615 (636)
T ss_dssp CCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSC-CCBCC-SC---CCTTCCEEECCSCT-TCEEECTTTHHHHHTTC
T ss_pred CCCCcccccCccccc-ChHHHhcCCCCCEEECCCCc-CCccC-Hh---HhCcCCEEECcCCC-CccccHHhcchhhhccc
Confidence 965331 2211 11223478999999999964 33211 11 23899999999997 43211 1222222
Q ss_pred --CCCCCEEeccCCCCCC
Q 014524 403 --CLRLEEIDLTDCNGVN 418 (423)
Q Consensus 403 --~~~L~~L~l~~c~~i~ 418 (423)
+...+..++.+|+.+.
T Consensus 616 ~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 616 YMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CEEECCTTSEEESCGGGC
T ss_pred ceeecCCccccCCCcccc
Confidence 2234556778887654
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=3.6e-18 Score=156.12 Aligned_cols=298 Identities=14% Similarity=0.144 Sum_probs=194.6
Q ss_pred hcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHH
Q 014524 62 DKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAA 141 (423)
Q Consensus 62 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 141 (423)
..++++++|+++++. +++.. . ...+++|++|+++++. ++... ...+++|++|+++++ .+...
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~~--~------l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N-~l~~~--- 100 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDMT--G------IEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSN-KLTNL--- 100 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCCT--T------GGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSS-CCSCC---
T ss_pred hHcCCCCEEEccCCC-cccCh--h------hcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCC-CCcee---
Confidence 346889999998853 44321 2 3567899999999874 44321 336889999999884 34443
Q ss_pred HhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCc-ccChhHHHHhh
Q 014524 142 ALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTNDSFCSIA 220 (423)
Q Consensus 142 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~ 220 (423)
.+..+++|++|+++++ .++... ...+++|++|+++++ .++... ...+++|+.|++++| .+... .+.
T Consensus 101 ~~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~ 167 (457)
T 3bz5_A 101 DVTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL---DVT 167 (457)
T ss_dssp CCTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC---CCT
T ss_pred ecCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc---ccc
Confidence 2677899999999885 555432 345788999999877 454432 346789999999988 33322 356
Q ss_pred ccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcC
Q 014524 221 TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDL 300 (423)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 300 (423)
.+++|++|+++++ .++... ...+++|+.|++.++ .++... ...+++|+.|+++++. ++. .. +..+
T Consensus 168 ~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~--l~~--ip-~~~l 232 (457)
T 3bz5_A 168 PQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNK--LTE--ID-VTPL 232 (457)
T ss_dssp TCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSC--CSC--CC-CTTC
T ss_pred cCCcCCEEECCCC-ccceec----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCc--ccc--cC-cccc
Confidence 6889999999875 444322 234788999999875 344432 3457889999998886 443 12 6778
Q ss_pred CcccEEEccCccCChhhHHHHHhcCCCccEEee----------ccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHH
Q 014524 301 KNLEAITMDGARISDSCFQTISFNCKSLVEIGL----------SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAI 370 (423)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l----------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 370 (423)
++|+.|++++|.+..... ..+++|+.|++ +++....... ...+++|+.|++++|..+.....
T Consensus 233 ~~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TTCSEEECCSSCCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCCCEEEeeCCcCCCcCH----HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc
Confidence 899999999987765432 24555555544 4333111110 23568888888888753221000
Q ss_pred -----HH-HHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 371 -----SA-IADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 371 -----~~-~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
.. -...+++|+.|++++|. ++.. .+ ..+++|+.|++++ +++++
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l---~l-~~l~~L~~L~l~~-N~l~~ 353 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTE-LTEL---DV-SHNTKLKSLSCVN-AHIQD 353 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCC-CSCC---CC-TTCTTCSEEECCS-SCCCB
T ss_pred CCCcceEechhhcccCCEEECCCCc-cccc---cc-ccCCcCcEEECCC-CCCCC
Confidence 00 01246788889988876 6653 23 3789999999998 77765
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=9.7e-19 Score=170.10 Aligned_cols=323 Identities=15% Similarity=0.149 Sum_probs=204.8
Q ss_pred cCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHH-HH------HhCCCccEEEccCcCCC
Q 014524 63 KYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEM-LA------RACPLLESVDLSYCCGF 135 (423)
Q Consensus 63 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~------~~~~~L~~L~l~~~~~~ 135 (423)
.+++|+.|+++++....... .. ...+++|++|+++++..++...++. +. ..+++|++|+++++ .+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP-~~------l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L 560 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP-DF------LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NL 560 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC-GG------GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CC
T ss_pred cCCCCCEEECcCCCCCccCh-HH------HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cC
Confidence 78899999999865332211 11 3578999999999985355412222 21 23569999999984 34
Q ss_pred ChHH-HHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCC-CcEEeccCcccCh
Q 014524 136 GDRE-AAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD-LKSLDVSYLKLTN 213 (423)
Q Consensus 136 ~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 213 (423)
.... ...+..+++|+.|+++++ .++. +. ....+++|+.|+++++ .+.. +......+++ |+.|++++|.+..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N-~l~~--lp-~~~~L~~L~~L~Ls~N-~l~~--lp~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHN-KVRH--LE-AFGTNVKLTDLKLDYN-QIEE--IPEDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTS-CCCB--CC-CCCTTSEESEEECCSS-CCSC--CCTTSCEECTTCCEEECCSSCCCS
T ss_pred CccCChhhhhcCCCCCEEECCCC-Cccc--ch-hhcCCCcceEEECcCC-cccc--chHHHhhccccCCEEECcCCCCCc
Confidence 4221 125788999999999985 5553 22 3345889999999987 4442 2222346677 9999999997662
Q ss_pred hHHHHhhc--cCCccEEEecCCCCCCchh--HH-HHH-hcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcc
Q 014524 214 DSFCSIAT--LAKLESLVMVGCPCVDDTG--LR-FLE-SGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFS 287 (423)
Q Consensus 214 ~~~~~~~~--~~~L~~L~l~~~~~~~~~~--~~-~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (423)
....+.. .++|+.|+++++. +.... +. .+. ..+++|+.|+++++ .+... ...+...+++|+.|+++++.
T Consensus 634 -lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~- 708 (876)
T 4ecn_A 634 -IPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL- 708 (876)
T ss_dssp -CCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC-
T ss_pred -CchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc-
Confidence 2222333 3459999999853 32210 00 000 12358999999985 34432 23344568999999999886
Q ss_pred cchHHHHHHh--------hcCCcccEEEccCccCChhhHHHHH-hcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEe
Q 014524 288 ELSTTLLHHM--------RDLKNLEAITMDGARISDSCFQTIS-FNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTID 358 (423)
Q Consensus 288 ~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 358 (423)
+. .....+ .++++|+.|++++|.+.... ..+. ..+++|+.|+++++. ++. +..-...+++|+.|+
T Consensus 709 -L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 709 -MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFG 782 (876)
T ss_dssp -CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEE
T ss_pred -CC-ccChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEE
Confidence 33 111111 12348999999999876322 1221 367899999999876 654 332344789999999
Q ss_pred cCCCC-----CCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 014524 359 LTCCH-----SITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 359 l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (423)
+++|. .+.......+ ..+++|+.|++++|. ++..... ..++|+.|++++| .+.
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l-~~L~~L~~L~Ls~N~-L~~Ip~~----l~~~L~~LdLs~N-~l~ 840 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGI-TTCPSLIQLQIGSND-IRKVDEK----LTPQLYILDIADN-PNI 840 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSC-CCBCCSC----CCSSSCEEECCSC-TTC
T ss_pred CCCCCCcccccccccChHHH-hcCCCCCEEECCCCC-CCccCHh----hcCCCCEEECCCC-CCC
Confidence 97632 2222222233 358999999999987 5422111 2478999999994 443
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=1.7e-19 Score=178.06 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=52.6
Q ss_pred hhcCCCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHH
Q 014524 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (423)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 140 (423)
+..+++|++|+++++.......... ...+++|++|+++++. +.... +.....+++|++|+++++ .+.....
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~------f~~L~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~Ls~n-~l~~~~~ 114 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEA------FRNLPNLRILDLGSSK-IYFLH-PDAFQGLFHLFELRLYFC-GLSDAVL 114 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTT------TSSCTTCCEEECTTCC-CCEEC-TTSSCSCSSCCCEECTTC-CCSSCCS
T ss_pred CcccccCeEEeCCCCCCccccCHHH------hcCCCCCCEEECCCCc-CcccC-HhHccCCcccCEeeCcCC-CCCcccc
Confidence 3456677777777653222211111 2455666777766653 22111 111124566666666653 2322111
Q ss_pred H--HhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccc
Q 014524 141 A--ALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWC 183 (423)
Q Consensus 141 ~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (423)
. .+..+++|++|+++++ .++..........+++|++|+++++
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 1 1445666666666653 3332222122234566666666554
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=5.4e-19 Score=166.87 Aligned_cols=134 Identities=12% Similarity=0.169 Sum_probs=71.6
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChh-hHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDS-CFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV 352 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 352 (423)
+++|+.|+++++. +.+.....+..+++|+.|++++|.+... .+......+++|++|+++++. ++..........++
T Consensus 352 l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 352 PSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAE 428 (562)
T ss_dssp CCCCCEEECCSSC--CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCT
T ss_pred CCCceEEECCCCc--cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcc
Confidence 4566666666654 3443444455666666666666665542 122222356666777766654 33211111123456
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhhC-CCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 353 NLKTIDLTCCHSITDDAISAIADSC-RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
+|+.|++++| .++... ...+ ++|+.|++++|. ++... ..+. .+++|+.|++++ ++++.
T Consensus 429 ~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N~-l~~ip-~~~~-~l~~L~~L~L~~-N~l~~ 487 (562)
T 3a79_B 429 SILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNNR-IMSIP-KDVT-HLQALQELNVAS-NQLKS 487 (562)
T ss_dssp TCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSSC-CCCCC-TTTT-SSCCCSEEECCS-SCCCC
T ss_pred cCCEEECCCC-CCCcch----hhhhcCcCCEEECCCCc-CcccC-hhhc-CCCCCCEEECCC-CCCCC
Confidence 6777777764 344322 1223 577888887775 65211 1122 577888888887 56653
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=1.5e-18 Score=163.93 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=101.7
Q ss_pred cCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchH--HHHHHhhcCCcccEEEccCccCChhhHHHHHhc
Q 014524 247 GCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELST--TLLHHMRDLKNLEAITMDGARISDSCFQTISFN 324 (423)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 324 (423)
.+++|++|+++++ .+..... .....+++|+.|+++++. +.. .....+..+++|+.|++++|.+...........
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVF-QGCSTLKRLQTLILQRNG--LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTT-TTCCSCSSCCEEECCSSC--CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred CCCCceEEECCCC-ccccchh-hhhcccCCCCEEECCCCC--cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 4678888888875 3333211 223457899999999886 443 444567788999999999987665222222336
Q ss_pred CCCccEEeeccCCCCChHHHHHHHhcC-CCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcC
Q 014524 325 CKSLVEIGLSKCLGVTNTGITQLVSGC-VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFC 403 (423)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 403 (423)
+++|++|+++++. ++... ...+ ++|+.|++++| .++. ....+. .+++|+.|++++|. ++..... ....+
T Consensus 427 l~~L~~L~l~~n~-l~~~~----~~~l~~~L~~L~L~~N-~l~~-ip~~~~-~l~~L~~L~L~~N~-l~~l~~~-~~~~l 496 (562)
T 3a79_B 427 AESILVLNLSSNM-LTGSV----FRCLPPKVKVLDLHNN-RIMS-IPKDVT-HLQALQELNVASNQ-LKSVPDG-VFDRL 496 (562)
T ss_dssp CTTCCEEECCSSC-CCGGG----GSSCCTTCSEEECCSS-CCCC-CCTTTT-SSCCCSEEECCSSC-CCCCCTT-STTTC
T ss_pred cccCCEEECCCCC-CCcch----hhhhcCcCCEEECCCC-cCcc-cChhhc-CCCCCCEEECCCCC-CCCCCHH-HHhcC
Confidence 7899999999876 65422 2334 68999999986 5542 111222 57899999999886 6642221 13468
Q ss_pred CCCCEEeccCC
Q 014524 404 LRLEEIDLTDC 414 (423)
Q Consensus 404 ~~L~~L~l~~c 414 (423)
++|+.|+++++
T Consensus 497 ~~L~~L~l~~N 507 (562)
T 3a79_B 497 TSLQYIWLHDN 507 (562)
T ss_dssp TTCCCEECCSC
T ss_pred CCCCEEEecCC
Confidence 89999999984
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=9.6e-19 Score=153.79 Aligned_cols=270 Identities=14% Similarity=0.091 Sum_probs=147.8
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
++++.|+++++ .+.......+..+++|++|+++++ .++......+ ..+++|++|+++++ .+..... ...++|
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAF-APLVKLERLYLSKN-QLKELPE----KMPKTL 123 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSS-CCSBCCS----SCCTTC
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHh-cCCCCCCEEECCCC-cCCccCh----hhcccc
Confidence 45555555552 233332223445556666666553 2332211111 23556666666554 2221110 122567
Q ss_pred cEEeccCcccChhHHHHhhccCCccEEEecCCCCCCch-hHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCcee
Q 014524 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDT-GLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (423)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (423)
+.|++++|.+.......+..+++|+.|+++++. +... ........+++|+.|++.++. +..... ...++|+.|
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~----~~~~~L~~L 197 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ----GLPPSLTEL 197 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----SCCTTCSEE
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-cccCCc----cccccCCEE
Confidence 777777776665555556667777777776642 2211 111112336777777777642 222110 012678888
Q ss_pred ccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecC
Q 014524 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (423)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (423)
+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|+++++. ++. +......+++|+.|+++
T Consensus 198 ~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 198 HLDGNK--ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVYLH 271 (330)
T ss_dssp ECTTSC--CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEECC
T ss_pred ECCCCc--CCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEECC
Confidence 888776 4444445667788888888888876654333333 67888999988875 542 22223467889999998
Q ss_pred CCCCCCHHHHHHHHh-----hCCCccEEEeccCCCCCHHHHH-HHHhcCCCCCEEeccC
Q 014524 361 CCHSITDDAISAIAD-----SCRGLVCLKIESCNMITEKGLY-QLGSFCLRLEEIDLTD 413 (423)
Q Consensus 361 ~~~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~i~~~~~~-~l~~~~~~L~~L~l~~ 413 (423)
+| .++......+.. ..+.|+.|++.+++ ++...+. .....++.++.+++++
T Consensus 272 ~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 272 NN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC--
T ss_pred CC-cCCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEecc
Confidence 85 444332222211 14678899999887 5432221 1223577899999887
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-17 Score=148.32 Aligned_cols=111 Identities=9% Similarity=0.070 Sum_probs=58.8
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHH--HhcCCCccEEeeccCCCCChHHHHHH---H
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTI--SFNCKSLVEIGLSKCLGVTNTGITQL---V 348 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~~---~ 348 (423)
+++|++|+++++. +.......+..+++|+.|++++|.+.......+ ....+.++.+++.++. +++..+..+ .
T Consensus 197 l~~L~~L~l~~n~--l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l 273 (353)
T 2z80_A 197 IQNVSHLILHMKQ--HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLL 273 (353)
T ss_dssp CSEEEEEEEECSC--STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHH
T ss_pred cccCCeecCCCCc--cccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhhHHHH
Confidence 4556666665554 332222333446666666666665443221111 1245567777777654 666544332 3
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 349 SGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 349 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
..+++|+.|++++| .++.. ...+...+++|+.|++++|+
T Consensus 274 ~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRN-QLKSV-PDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCC-CCCcc-CHHHHhcCCCCCEEEeeCCC
Confidence 46677777777774 34321 11222346777888887776
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=7.6e-19 Score=154.53 Aligned_cols=270 Identities=12% Similarity=0.081 Sum_probs=157.3
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
++|++|+++++ .+.......+..+++|++|+++++ .++......+ ..+++|++|+++++ .+..... ...++|
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~----~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAF-SPLRKLQKLYISKN-HLVEIPP----NLPSSL 125 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGS-TTCTTCCEEECCSS-CCCSCCS----SCCTTC
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHh-hCcCCCCEEECCCC-cCCccCc----cccccC
Confidence 45666666652 333333334555666677766663 3433222222 23666777776655 3332111 122678
Q ss_pred cEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhH-HHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCcee
Q 014524 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGL-RFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (423)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (423)
++|++++|.+.......+..+++|++|++.++. +..... ......+ +|+.|+++++. +..... ...++|+.|
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~----~~~~~L~~L 198 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK----DLPETLNEL 198 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS----SSCSSCSCC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC-CCccCc----cccCCCCEE
Confidence 888888886654444446678888888887743 221110 0011113 78888887753 322110 012688888
Q ss_pred ccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecC
Q 014524 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (423)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (423)
+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|+++++. ++. +......+++|+.|+++
T Consensus 199 ~l~~n~--i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 199 HLDHNK--IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp BCCSSC--CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEECC
T ss_pred ECCCCc--CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCc-Cee--cChhhhcCccCCEEECC
Confidence 888876 4444445677888999999999876654333333 77899999998876 552 22224578999999999
Q ss_pred CCCCCCHHHHHHHHhh-----CCCccEEEeccCCCCCHHHHH-HHHhcCCCCCEEeccCC
Q 014524 361 CCHSITDDAISAIADS-----CRGLVCLKIESCNMITEKGLY-QLGSFCLRLEEIDLTDC 414 (423)
Q Consensus 361 ~~~~l~~~~~~~~~~~-----~~~L~~L~l~~c~~i~~~~~~-~l~~~~~~L~~L~l~~c 414 (423)
+| .++......+... .++|+.|++.+++ ++...+. .....+++|+.++++++
T Consensus 273 ~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 273 TN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CC-CCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhcccc
Confidence 85 5554433333221 4678999999987 5422111 22336889999999884
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=1.2e-16 Score=145.99 Aligned_cols=277 Identities=16% Similarity=0.099 Sum_probs=193.8
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
.+++|++|+++++. ++.. +. ...+++|++|+++++ .+... .+..+++|++|+++++ .++... ...++
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~--~~-l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDM--TG-IEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSN-KLTNLD----VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSC-CCCC--TT-GGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSS-CCSCCC----CTTCT
T ss_pred HcCCCCEEEccCCC-cccC--hh-hcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCC-CCceee----cCCCC
Confidence 45899999999874 4432 22 347899999999984 45443 2778999999999995 455532 34589
Q ss_pred cccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCce
Q 014524 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (423)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (423)
+|++|+++++ .+.... ...+++|+.|++++|.+... .+..+++|++|+++++....... + ..+++|+.
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~-~~l~~L~~ 174 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---V-TPQTQLTT 174 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---C-TTCTTCCE
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---c-ccCCcCCE
Confidence 9999999987 555432 35789999999999977663 36779999999999875544432 2 34799999
Q ss_pred EecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEee
Q 014524 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (423)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (423)
|+++++ .++... ...+++|+.|+++++. ++.. .+..+++|+.|++++|.+.... + ..+++|+.|++
T Consensus 175 L~ls~n-~l~~l~----l~~l~~L~~L~l~~N~--l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~-~~l~~L~~L~l 240 (457)
T 3bz5_A 175 LDCSFN-KITELD----VSQNKLLNRLNCDTNN--ITKL---DLNQNIQLTFLDCSSNKLTEID---V-TPLTQLTYFDC 240 (457)
T ss_dssp EECCSS-CCCCCC----CTTCTTCCEEECCSSC--CSCC---CCTTCTTCSEEECCSSCCSCCC---C-TTCTTCSEEEC
T ss_pred EECCCC-ccceec----cccCCCCCEEECcCCc--CCee---ccccCCCCCEEECcCCcccccC---c-cccCCCCEEEe
Confidence 999985 444433 4457999999999987 4432 3778999999999999887733 3 37899999999
Q ss_pred ccCCCCChHHHHHHHhcCCCCcE----------EecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHH-----HHH
Q 014524 334 SKCLGVTNTGITQLVSGCVNLKT----------IDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKG-----LYQ 398 (423)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~----------L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~-----~~~ 398 (423)
+++. ++... ...+++|+. |++++|....... ...+++|+.|++++|..+.... +..
T Consensus 241 ~~N~-l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 241 SVNP-LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp CSSC-CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred eCCc-CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceE
Confidence 9876 65432 234555554 4555543322211 1357899999999986332210 000
Q ss_pred H-HhcCCCCCEEeccCCCCCCC
Q 014524 399 L-GSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 399 l-~~~~~~L~~L~l~~c~~i~~ 419 (423)
+ ...+++|+.|++++ ++++.
T Consensus 312 L~l~~~~~L~~L~L~~-N~l~~ 332 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNN-TELTE 332 (457)
T ss_dssp CCCTTCTTCCEEECTT-CCCSC
T ss_pred echhhcccCCEEECCC-Ccccc
Confidence 0 12567888888888 66655
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=1e-17 Score=148.57 Aligned_cols=212 Identities=17% Similarity=0.102 Sum_probs=127.1
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (423)
.+++|++|++++|.+.......+..+++|++|+++++. +...........+++|++|++.++..+..... ..+..+++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~ 175 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTF 175 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCE
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCC
Confidence 34555555555554443333334455555555555431 21110000112356666666665432332211 11234677
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHH--HHhcCCCC
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQ--LVSGCVNL 354 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L 354 (423)
|+.|+++++. +.......+..+++|+.|++++|.+...... +...+++|++|+++++. ++...... .....+.+
T Consensus 176 L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 176 LEELEIDASD--LQSYEPKSLKSIQNVSHLILHMKQHILLLEI-FVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLI 251 (353)
T ss_dssp EEEEEEEETT--CCEECTTTTTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEEEEEEESCB-CTTCCCC------CCCCC
T ss_pred CCEEECCCCC--cCccCHHHHhccccCCeecCCCCccccchhh-hhhhcccccEEECCCCc-cccccccccccccccchh
Confidence 8888887775 4444455677889999999999987654433 33468999999999876 54422111 12356789
Q ss_pred cEEecCCCCCCCHHHHHHHH---hhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 014524 355 KTIDLTCCHSITDDAISAIA---DSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (423)
Q Consensus 355 ~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (423)
+.+++.++ .+++..+..+. ..+++|+.|++++|. ++... ..+...+++|++|+++++ .++
T Consensus 252 ~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~L~~N-~~~ 314 (353)
T 2z80_A 252 KKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVP-DGIFDRLTSLQKIWLHTN-PWD 314 (353)
T ss_dssp CEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CBC
T ss_pred hccccccc-cccCcchhhhHHHHhcccCCCEEECCCCC-CCccC-HHHHhcCCCCCEEEeeCC-Ccc
Confidence 99999984 67777655543 358999999999987 76322 122247899999999994 443
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=3.9e-17 Score=143.52 Aligned_cols=290 Identities=9% Similarity=0.061 Sum_probs=187.5
Q ss_pred CcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhc
Q 014524 66 YIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF 145 (423)
Q Consensus 66 ~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 145 (423)
.++.+++++.. ++. + .....+++++|+++++. ++...... ...+++|++|+++++ .+.......+..
T Consensus 32 ~l~~l~~~~~~-l~~-----l----p~~~~~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLG-LEK-----V----PKDLPPDTALLDLQNNK-ITEIKDGD-FKNLKNLHTLILINN-KISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSC-CCS-----C----CCSCCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTTTT
T ss_pred CCeEEEecCCC-ccc-----c----CccCCCCCeEEECCCCc-CCEeChhh-hccCCCCCEEECCCC-cCCeeCHHHhcC
Confidence 57777776532 322 2 12345789999999874 33221111 236899999999984 455544456778
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccCh--hHHHHhhccC
Q 014524 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN--DSFCSIATLA 223 (423)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~ 223 (423)
+++|++|+++++ .++.... ...++|++|+++++ .+.......+ ..+++|+.|++++|.+.. .....+..++
T Consensus 99 l~~L~~L~Ls~n-~l~~l~~----~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 99 LVKLERLYLSKN-QLKELPE----KMPKTLQELRVHEN-EITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp CTTCCEEECCSS-CCSBCCS----SCCTTCCEEECCSS-CCCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCCCEEECCCC-cCCccCh----hhcccccEEECCCC-cccccCHhHh-cCCccccEEECCCCcCCccCcChhhccCCC
Confidence 999999999984 4443211 11378999999987 4554443333 478999999999997754 2334567799
Q ss_pred CccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcc
Q 014524 224 KLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNL 303 (423)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 303 (423)
+|++|+++++. +..... ...++|++|+++++ .+...... .+..+++|+.|+++++. +.......+..+++|
T Consensus 172 ~L~~L~l~~n~-l~~l~~----~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 172 KLSYIRIADTN-ITTIPQ----GLPPSLTELHLDGN-KITKVDAA-SLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHL 242 (330)
T ss_dssp TCCEEECCSSC-CCSCCS----SCCTTCSEEECTTS-CCCEECTG-GGTTCTTCCEEECCSSC--CCEECTTTGGGSTTC
T ss_pred CcCEEECCCCc-cccCCc----cccccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc--CceeChhhccCCCCC
Confidence 99999999853 322110 11378999999985 34443222 23457999999999987 444444567789999
Q ss_pred cEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHH-----hcCCCCcEEecCCCCCCCHHH-HHHHHhhC
Q 014524 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLV-----SGCVNLKTIDLTCCHSITDDA-ISAIADSC 377 (423)
Q Consensus 304 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~ 377 (423)
+.|++++|.+.... ..+ ..+++|++|+++++. ++......+. ...+.|+.|++.+++ +.... .......+
T Consensus 243 ~~L~L~~N~l~~lp-~~l-~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 243 RELHLNNNKLVKVP-GGL-ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCV 318 (330)
T ss_dssp CEEECCSSCCSSCC-TTT-TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTC
T ss_pred CEEECCCCcCccCC-hhh-ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc-ccccccCccccccc
Confidence 99999999876321 112 367899999999876 6543322221 124789999999864 33211 11223347
Q ss_pred CCccEEEeccC
Q 014524 378 RGLVCLKIESC 388 (423)
Q Consensus 378 ~~L~~L~l~~c 388 (423)
++++.++++++
T Consensus 319 ~~l~~l~L~~N 329 (330)
T 1xku_A 319 YVRAAVQLGNY 329 (330)
T ss_dssp CCGGGEEC---
T ss_pred cceeEEEeccc
Confidence 88999999875
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=3.2e-17 Score=143.00 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=15.5
Q ss_pred CCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCC
Q 014524 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (423)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (423)
+++|++|++++ ..+.......+..+++|++|++++
T Consensus 33 ~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~ 67 (317)
T 3o53_A 33 AWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSS 67 (317)
T ss_dssp GGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTT
T ss_pred CCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCC
Confidence 44455555544 223333333344445555555544
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=5.7e-17 Score=148.22 Aligned_cols=156 Identities=19% Similarity=0.128 Sum_probs=67.2
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (423)
.+++|+.|++++|.+.......+..+++|++|++.++..+.......+ ..+++|++|+++++. ++... . ...+++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~ 208 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMCN-LREIP--N-LTPLIK 208 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTTSC-CSSCC--C-CTTCSS
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCCCc-Ccccc--c-cCCCcc
Confidence 345555555555544333223344455555555554333222111111 124555555555432 22111 0 123455
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcE
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (423)
|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|+++++. ++.... .....+++|+.
T Consensus 209 L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~ 283 (440)
T 3zyj_A 209 LDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNN-LTLLPH-DLFTPLHHLER 283 (440)
T ss_dssp CCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSC-CCCCCT-TTTSSCTTCCE
T ss_pred cCEEECCCCc--cCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCC-CCccCh-hHhccccCCCE
Confidence 5555555553 3333333444555555555555554433222222 44555555555543 332111 11224455555
Q ss_pred EecCCC
Q 014524 357 IDLTCC 362 (423)
Q Consensus 357 L~l~~~ 362 (423)
|++++|
T Consensus 284 L~L~~N 289 (440)
T 3zyj_A 284 IHLHHN 289 (440)
T ss_dssp EECCSS
T ss_pred EEcCCC
Confidence 555554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.61 E-value=6.8e-17 Score=148.23 Aligned_cols=227 Identities=13% Similarity=0.077 Sum_probs=118.8
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
+++++|++++ ..+.......+..+++|++|+++++ .++...... ...+++|++|+++++ .+...... ....+++|
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLTVIPSG-AFEYLSKL 149 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSBCCTT-TSSSCTTC
T ss_pred CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCCccChh-hhcccCCC
Confidence 3555666655 2333333334455666666666653 333322111 123566666666654 23322111 12346677
Q ss_pred cEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceec
Q 014524 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (423)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (423)
+.|++++|.+.......+..+++|++|++.++..+.......+ ..+++|+.|+++++. +.... ....+++|+.|+
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~ 224 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCN-IKDMP---NLTPLVGLEELE 224 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTSC-CSSCC---CCTTCTTCCEEE
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCCc-ccccc---cccccccccEEE
Confidence 7777777755543333455677777777776544433221112 236677777777642 22211 123456777777
Q ss_pred cCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 282 AGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
++++. +.......+..+++|+.|++++|.+.......+. .+++|+.|+++++. ++.... .....+++|+.|++++
T Consensus 225 Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 225 MSGNH--FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNN-LSSLPH-DLFTPLRYLVELHLHH 299 (452)
T ss_dssp CTTSC--CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CSCCCT-TSSTTCTTCCEEECCS
T ss_pred CcCCc--CcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCc-CCccCh-HHhccccCCCEEEccC
Confidence 77765 4444445566677777777777765543333332 56677777777654 442211 1223566777777776
Q ss_pred CC
Q 014524 362 CH 363 (423)
Q Consensus 362 ~~ 363 (423)
|+
T Consensus 300 Np 301 (452)
T 3zyi_A 300 NP 301 (452)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=2e-18 Score=150.12 Aligned_cols=132 Identities=18% Similarity=0.132 Sum_probs=58.5
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCC-CCceEecCCCcccCcchHHHHHHhCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCP-LLKTIFVSRCKFVSSTGLISVIRGHS 275 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~ 275 (423)
.+++|++|++++|.+.......+..+++|++|+++++ .+.......+.. ++ +|+.|+++++. +..... ..+..++
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~-l~~~L~~L~L~~N~-l~~~~~-~~~~~l~ 198 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGS-FSKLFTSMTISRNR-LTGKIP-PTFANLN 198 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGC-CCTTCCEEECCSSE-EEEECC-GGGGGCC
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhh-hhhcCcEEECcCCe-eeccCC-hHHhCCc
Confidence 4566666666666544333334555666666666653 222111111222 33 56666665532 211111 1111222
Q ss_pred CCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 276 GLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
|+.|+++++. +.......+..+++|+.|++++|.+...... ...+++|++|+++++.
T Consensus 199 -L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 199 -LAFVDLSRNM--LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp -CSEEECCSSE--EEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSC
T ss_pred -ccEEECcCCc--ccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCc
Confidence 5666665554 3333334445555666666665544321111 1234455555555443
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=2.1e-17 Score=143.74 Aligned_cols=209 Identities=15% Similarity=0.144 Sum_probs=136.5
Q ss_pred cCCCCcEEeccCcccChhHHHHh--hccCCccEEEecCCCCCCch--hHHHHHh-cCCCCceEecCCCcccCcchHHHHH
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSI--ATLAKLESLVMVGCPCVDDT--GLRFLES-GCPLLKTIFVSRCKFVSSTGLISVI 271 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 271 (423)
.+++|++|++++|.+.......+ ..+++|++|+++++. +... .+..+.. ..++|++|+++++. +...... .+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~-~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCE-QV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTT-TC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHH-Hh
Confidence 47888888888886665443433 568888888888753 3322 2222222 12788888888753 3332211 22
Q ss_pred HhCCCCceeccCCCcccchHH-HHHHh--hcCCcccEEEccCccCCh--hhHHHHHhcCCCccEEeeccCCCCChHHHHH
Q 014524 272 RGHSGLLQLDAGHCFSELSTT-LLHHM--RDLKNLEAITMDGARISD--SCFQTISFNCKSLVEIGLSKCLGVTNTGITQ 346 (423)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 346 (423)
..+++|+.|+++++.. .... ....+ ..+++|+.|++++|.+.. .....+...+++|++|+++++. ++......
T Consensus 170 ~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP 247 (312)
T ss_dssp CCCSSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS
T ss_pred ccCCCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh
Confidence 3478899999988863 2221 23344 678999999999998874 2233444577899999999876 55432111
Q ss_pred HHhcCCCCcEEecCCCCCCCHHHHHHHHhh-CCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCCCC
Q 014524 347 LVSGCVNLKTIDLTCCHSITDDAISAIADS-CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG 421 (423)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~ 421 (423)
....+++|+.|++++| .++. +... .++|+.|++++|. ++.. .. ...+++|++|++++ +.+++.|
T Consensus 248 ~~~~l~~L~~L~Ls~N-~l~~-----ip~~~~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~~-N~l~~~~ 312 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFT-GLKQ-----VPKGLPAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLKG-NPFLDSE 312 (312)
T ss_dssp CCCCCTTCCEEECTTS-CCSS-----CCSSCCSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECTT-CTTTCCC
T ss_pred hhhhcCCCCEEECCCC-ccCh-----hhhhccCCceEEECCCCC-CCCC--hh-HhhCCCCCEEeccC-CCCCCCC
Confidence 2234689999999985 4441 1111 2689999999987 7654 22 34789999999999 8888764
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=8.6e-18 Score=146.09 Aligned_cols=203 Identities=14% Similarity=0.070 Sum_probs=83.7
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHH--HHHHHHhCccccccccccccccchhhHHHHHhcCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVG--LAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 199 (423)
++|++|+++++ .+.......+..+++|++|+++++ .++..+ ...+ ..+++|++|+++++ .+.... .....++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n-~i~~l~--~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFN-GVITMS--SNFLGLE 101 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSC-SEEEEE--EEEETCT
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCC-ccccCh--hhcCCCC
Confidence 34555555542 232222222344556666666552 333211 0111 12555555555554 222110 0012456
Q ss_pred CCcEEeccCcccChhHH-HHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCc
Q 014524 200 DLKSLDVSYLKLTNDSF-CSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLL 278 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 278 (423)
+|++|++++|.+..... ..+..+++|++|+++++. +...... ....+++|++|++.++. +........+..+++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCC
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh-hcccCcCCCEEECCCCc-cccccchhHHhhCcCCC
Confidence 66666666664433221 234445666666665532 1111111 11224555555555532 21111111122344555
Q ss_pred eeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccC
Q 014524 279 QLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKC 336 (423)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 336 (423)
.|+++++. +.......+..+++|+.|++++|.+.......+ ..+++|++|+++++
T Consensus 179 ~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 233 (306)
T 2z66_A 179 FLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLN 233 (306)
T ss_dssp EEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTS
T ss_pred EEECCCCC--cCCcCHHHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCC
Confidence 55555543 222222334445555555555554333221111 13445555555544
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=2.2e-17 Score=145.18 Aligned_cols=291 Identities=13% Similarity=0.071 Sum_probs=184.9
Q ss_pred CcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhc
Q 014524 66 YIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF 145 (423)
Q Consensus 66 ~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 145 (423)
.++.++++++. ++. ++ ....+++++|+++++. +...... ....+++|++|+++++ .+.......+..
T Consensus 34 ~l~~l~~~~~~-l~~-----ip----~~~~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKA-----VP----KEISPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNN-KISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSC-CSS-----CC----SCCCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCCEECGGGSTT
T ss_pred cCCEEECCCCC-ccc-----cC----CCCCCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCC-ccCccCHhHhhC
Confidence 57888887643 321 21 2335789999999874 3322111 1247899999999984 466555556778
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChh--HHHHhhccC
Q 014524 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTND--SFCSIATLA 223 (423)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~ 223 (423)
+++|++|+++++ .++.... ...++|++|+++++ .+...... ....+++|+.|++++|.+... ....+..+
T Consensus 101 l~~L~~L~L~~n-~l~~l~~----~~~~~L~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 101 LRKLQKLYISKN-HLVEIPP----NLPSSLVELRIHDN-RIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp CTTCCEEECCSS-CCCSCCS----SCCTTCCEEECCSS-CCCCCCSG-GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred cCCCCEEECCCC-cCCccCc----cccccCCEEECCCC-ccCccCHh-HhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 999999999984 4443211 11378999999887 44433221 234689999999999977532 22233345
Q ss_pred CccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcc
Q 014524 224 KLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNL 303 (423)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 303 (423)
+|++|+++++. +..... ...++|++|+++++ .+...... .+..+++|+.|+++++. +.......+..+++|
T Consensus 173 ~L~~L~l~~n~-l~~l~~----~~~~~L~~L~l~~n-~i~~~~~~-~l~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 173 KLNYLRISEAK-LTGIPK----DLPETLNELHLDHN-KIQAIELE-DLLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTL 243 (332)
T ss_dssp CCSCCBCCSSB-CSSCCS----SSCSSCSCCBCCSS-CCCCCCTT-SSTTCTTCSCCBCCSSC--CCCCCTTGGGGCTTC
T ss_pred ccCEEECcCCC-CCccCc----cccCCCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc--CCcCChhHhhCCCCC
Confidence 89999998753 322110 11378999999875 34333221 22357899999999986 554444567889999
Q ss_pred cEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHh-----cCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 014524 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVS-----GCVNLKTIDLTCCHSITDDAISAIADSCR 378 (423)
Q Consensus 304 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 378 (423)
+.|++++|.+.... ..+ ..+++|+.|+++++. ++..+...+.. ..+.|+.|++.+++.............++
T Consensus 244 ~~L~L~~N~l~~lp-~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 244 RELHLDNNKLSRVP-AGL-PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp CEEECCSSCCCBCC-TTG-GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CEEECCCCcCeecC-hhh-hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 99999999876321 113 378999999999876 66543332221 14679999999865321111222233578
Q ss_pred CccEEEeccCC
Q 014524 379 GLVCLKIESCN 389 (423)
Q Consensus 379 ~L~~L~l~~c~ 389 (423)
+|+.+++++|.
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 99999998875
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=4.1e-18 Score=148.15 Aligned_cols=252 Identities=13% Similarity=0.055 Sum_probs=147.0
Q ss_pred CCccEEEeccCCCCch-hHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCcc
Q 014524 96 RSLKSLILSRSTGLRY-RGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVN 174 (423)
Q Consensus 96 ~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 174 (423)
.++++|+++++. +.. ..++.....+++|++|+++++..+.......+..+++|++|+++++ .++..... ....+++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~-~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPD-FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCG-GGGGCTT
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCH-HHhCCCC
Confidence 567777777663 322 0111223367788888887423333333344667788888888773 33321111 2234778
Q ss_pred ccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccC-CccEEEecCCCCCCchhHHHHHhcCCCCce
Q 014524 175 LERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLA-KLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (423)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (423)
|++|+++++ .+....... ...+++|++|++++|.+.......+..++ +|++|+++++. +.......+.. ++ |+.
T Consensus 127 L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~-l~-L~~ 201 (313)
T 1ogq_A 127 LVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFAN-LN-LAF 201 (313)
T ss_dssp CCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGG-CC-CSE
T ss_pred CCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhC-Cc-ccE
Confidence 888888776 343221112 23678888888888876655555666766 88888888742 22111112222 44 888
Q ss_pred EecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEee
Q 014524 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (423)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (423)
|+++++. +... ....+..+++|+.|+++++. +.... ..+..+++|+.|++++|.+.......+. .+++|++|++
T Consensus 202 L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L 275 (313)
T 1ogq_A 202 VDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS--LAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNV 275 (313)
T ss_dssp EECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE--ECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEEC
T ss_pred EECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc--eeeec-CcccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEEC
Confidence 8888753 3222 12223457888899888876 33222 2256788999999999877643333333 6778888888
Q ss_pred ccCCCCChHHHHHHHhcCCCCcEEecCCCCC
Q 014524 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHS 364 (423)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (423)
+++. ++.. +... ..+++|+.+++.+++.
T Consensus 276 s~N~-l~~~-ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 276 SFNN-LCGE-IPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CSSE-EEEE-CCCS-TTGGGSCGGGTCSSSE
T ss_pred cCCc-cccc-CCCC-ccccccChHHhcCCCC
Confidence 8765 4321 1111 3456777777776543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=2.4e-16 Score=135.36 Aligned_cols=206 Identities=21% Similarity=0.212 Sum_probs=132.6
Q ss_pred CccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCC
Q 014524 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (423)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (423)
.++|++|+++++ .+.......+ ..+++|+.|+++++.+.......+..+++|++|+++++..+.......+ ..+++|
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRL 107 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTC
T ss_pred CCCceEEEeeCC-cCCccCHHHc-ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh-cCCcCC
Confidence 468899998876 4544332222 4678999999998877665555677788999999987643433222222 337889
Q ss_pred ceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEE
Q 014524 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (423)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (423)
++|++.++. +.... ...+..+++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|
T Consensus 108 ~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L 182 (285)
T 1ozn_A 108 HTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRL 182 (285)
T ss_dssp CEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEE
T ss_pred CEEECCCCc-CCEEC-HhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCcccccCHHHhc-CccccCEE
Confidence 999988753 33221 1223457888888888876 4433334466788888888888876643332233 57788888
Q ss_pred eeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 332 GLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
+++++. ++...... ...+++|+.|++++| .++......+ ..+++|+.|++++++
T Consensus 183 ~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 183 LLHQNR-VAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred ECCCCc-ccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccCCC
Confidence 888765 54432222 246788888888875 4444333333 357888888888776
No 63
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.56 E-value=5.7e-15 Score=113.46 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=83.8
Q ss_pred cccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhc---CCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 014524 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSG---CVNLKTIDLTCCHSITDDAISAIADSCR 378 (423)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 378 (423)
.|+.|++++|.+++.++..+. .|++|++|+|++|..++|.++..+... +++|+.|++++|..+||.++..+. .++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence 578888888888888888775 788888888888888888888888752 567888888888888888888876 588
Q ss_pred CccEEEeccCCCCCHHH--HHHHHhcCCCCCE
Q 014524 379 GLVCLKIESCNMITEKG--LYQLGSFCLRLEE 408 (423)
Q Consensus 379 ~L~~L~l~~c~~i~~~~--~~~l~~~~~~L~~ 408 (423)
+|+.|++++|+.||+.+ ...+.+.+|+++.
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 88888888888888765 3445566777654
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.56 E-value=3.1e-17 Score=157.72 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=37.2
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCc
Q 014524 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (423)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (423)
.+++|++|+|+++. +..-.. .....+++|++|+++++ .+.......+..+++|++|+++++ .++..........++
T Consensus 98 ~L~~L~~L~Ls~N~-l~~l~~-~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 98 SLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLT 173 (635)
T ss_dssp TCTTCCEEECTTCC-CCEECG-GGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCT
T ss_pred CCCCCCEEEccCCc-CCCCCH-HHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccch
Confidence 34555555555542 221100 11124555555555552 233222223445556666666552 332222222233356
Q ss_pred cccccccccc
Q 014524 174 NLERLSLKWC 183 (423)
Q Consensus 174 ~L~~L~l~~~ 183 (423)
+|++|+++++
T Consensus 174 ~L~~L~L~~N 183 (635)
T 4g8a_A 174 NLEHLDLSSN 183 (635)
T ss_dssp TCCEEECCSS
T ss_pred hhhhhcccCc
Confidence 6666666544
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=5.8e-16 Score=135.01 Aligned_cols=241 Identities=14% Similarity=0.034 Sum_probs=141.5
Q ss_pred cccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHh
Q 014524 92 LSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVR 171 (423)
Q Consensus 92 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 171 (423)
....++|++|+++++. +...... ....+++|++|+++++. +.... .+..+++|++|+++++ .++... .
T Consensus 30 ~~~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~--~~~~l~~L~~L~Ls~n-~l~~l~------~ 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP-LSQISAA-DLAPFTKLELLNLSSNV-LYETL--DLESLSTLRTLDLNNN-YVQELL------V 97 (317)
T ss_dssp HTTGGGCSEEECTTSC-CCCCCHH-HHTTCTTCCEEECTTSC-CEEEE--EETTCTTCCEEECCSS-EEEEEE------E
T ss_pred hccCCCCCEEECcCCc-cCcCCHH-HhhCCCcCCEEECCCCc-CCcch--hhhhcCCCCEEECcCC-cccccc------C
Confidence 3456788888888873 4332222 23478889999998743 33221 2667888999998884 444321 2
Q ss_pred CccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCC
Q 014524 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (423)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (423)
.++|++|+++++ .+..... ..+++|+.|++++|.+.......+..+++|++|+++++ .+.......+...+++|
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTL 171 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTC
T ss_pred CCCcCEEECCCC-ccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcC
Confidence 478888888776 3433221 24678888888888776654445566788888888874 44443333344446788
Q ss_pred ceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEE
Q 014524 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (423)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (423)
++|+++++. ++.... ...+++|+.|+++++. +... ...+..+++|+.|++++|.+.... .....+++|+.|
T Consensus 172 ~~L~L~~N~-l~~~~~---~~~l~~L~~L~Ls~N~--l~~l-~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L 242 (317)
T 3o53_A 172 EHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK--LAFM-GPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHF 242 (317)
T ss_dssp CEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC--CCEE-CGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEE
T ss_pred CEEECCCCc-Cccccc---ccccccCCEEECCCCc--CCcc-hhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEE
Confidence 888887753 332210 0125677777777665 2221 122555666777777766654311 112245666666
Q ss_pred eeccCCCCChHHHHHHHhcCCCCcEEecC
Q 014524 332 GLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (423)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (423)
+++++. ++..........+++|+.|++.
T Consensus 243 ~l~~N~-~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 243 DLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECTTCC-CBHHHHHHHHHTCHHHHHHHHH
T ss_pred EccCCC-ccCcCHHHHHhccccceEEECC
Confidence 666655 5433444444555666665555
No 66
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.55 E-value=3e-15 Score=115.01 Aligned_cols=93 Identities=24% Similarity=0.434 Sum_probs=86.3
Q ss_pred CCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhh---CCCccEEEeccCCCCCHHHHHHHHhc
Q 014524 326 KSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADS---CRGLVCLKIESCNMITEKGLYQLGSF 402 (423)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~~L~~L~l~~c~~i~~~~~~~l~~~ 402 (423)
.+|++|++++|. +++.++..+ ..|++|+.|++++|..++|.++..+... +++|+.|++++|.+||+.++..+. .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 479999999998 999999887 5899999999999999999999999862 578999999999999999999997 7
Q ss_pred CCCCCEEeccCCCCCCCCC
Q 014524 403 CLRLEEIDLTDCNGVNDKG 421 (423)
Q Consensus 403 ~~~L~~L~l~~c~~i~~~~ 421 (423)
+++|+.|++++|++|+|.|
T Consensus 138 ~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CTTCCEEEEESCTTCCCHH
T ss_pred CCCCCEEECCCCCCCCchH
Confidence 9999999999999999865
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.54 E-value=2.4e-16 Score=144.58 Aligned_cols=227 Identities=17% Similarity=0.167 Sum_probs=156.1
Q ss_pred CCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCcc
Q 014524 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (423)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 226 (423)
+++++|+++++ .++......+ ..+++|++|+++++ .+.......+ ..+++|+.|++++|.+.......+..+++|+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCC-cCceECHHHc-CCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 68999999984 5554332222 35899999999987 4544332222 4689999999999977655445567799999
Q ss_pred EEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEE
Q 014524 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAI 306 (423)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 306 (423)
+|+++++ .+.......+ ..+++|+.|++.++..+...... .+..+++|+.|+++++. +.. ...+..+++|+.|
T Consensus 151 ~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~--l~~--~~~~~~l~~L~~L 223 (452)
T 3zyi_A 151 ELWLRNN-PIESIPSYAF-NRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCN--IKD--MPNLTPLVGLEEL 223 (452)
T ss_dssp EEECCSC-CCCEECTTTT-TTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSC--CSS--CCCCTTCTTCCEE
T ss_pred EEECCCC-CcceeCHhHH-hcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCc--ccc--cccccccccccEE
Confidence 9999985 3433221122 34899999999987655543322 23457899999999886 332 2346678899999
Q ss_pred EccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEec
Q 014524 307 TMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIE 386 (423)
Q Consensus 307 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 386 (423)
++++|.+.......+. .+++|++|+++++. ++...... ...+++|+.|++++| .++..... ....+++|+.|+++
T Consensus 224 ~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLH 298 (452)
T ss_dssp ECTTSCCSEECGGGGT-TCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECC
T ss_pred ECcCCcCcccCccccc-CccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEECCCC-cCCccChH-HhccccCCCEEEcc
Confidence 9999987765444443 78899999999876 55432222 346899999999985 44432222 22357899999999
Q ss_pred cCC
Q 014524 387 SCN 389 (423)
Q Consensus 387 ~c~ 389 (423)
+++
T Consensus 299 ~Np 301 (452)
T 3zyi_A 299 HNP 301 (452)
T ss_dssp SSC
T ss_pred CCC
Confidence 866
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.54 E-value=5.6e-17 Score=140.94 Aligned_cols=229 Identities=15% Similarity=0.124 Sum_probs=149.3
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhh--HHHHHhcCCCCcEEeccCcccChhHHHHhhccC
Q 014524 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLG--IDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLA 223 (423)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 223 (423)
.++|++|+++++ .++... ......+++|++|+++++ .+...+ ...+ ..+++|+.|++++|.+... ...+..++
T Consensus 27 ~~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l-~~~~~~l~ 101 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM-SSNFLGLE 101 (306)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE-EEEEETCT
T ss_pred CCCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCccccC-hhhcCCCC
Confidence 368999999984 454322 222345899999999987 444321 1222 2689999999999965431 12355689
Q ss_pred CccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchH-HHHHHhhcCCc
Q 014524 224 KLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELST-TLLHHMRDLKN 302 (423)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~ 302 (423)
+|++|+++++. +...........+++|++|+++++. +... ....+..+++|+.|+++++. +.. .....+..+++
T Consensus 102 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 102 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRN 176 (306)
T ss_dssp TCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTT
T ss_pred CCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCc--cccccchhHHhhCcC
Confidence 99999998753 2221110112347899999998853 2221 12223457899999999886 443 34455778899
Q ss_pred ccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhC-CCcc
Q 014524 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSC-RGLV 381 (423)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~ 381 (423)
|+.|++++|.+.......+. .+++|++|+++++. ++...... ...+++|+.|++++| .++......+. .+ ++|+
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~ 251 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLA 251 (306)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCC
T ss_pred CCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC-CCcccCHHHHH-hhhccCC
Confidence 99999999987664333333 67899999998876 54422212 346789999999985 45443333333 34 4899
Q ss_pred EEEeccCC
Q 014524 382 CLKIESCN 389 (423)
Q Consensus 382 ~L~l~~c~ 389 (423)
.|++++++
T Consensus 252 ~L~L~~N~ 259 (306)
T 2z66_A 252 FLNLTQND 259 (306)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 99999887
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=1.4e-15 Score=130.52 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=30.0
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCC
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH 363 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 363 (423)
+..+++|+.|++++|.+.......+. .+++|++|+++++. ++..... ....+++|+.|++++++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANN-LSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-CSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCc-CCcCCHH-HcccCcccCEEeccCCC
Confidence 33445555555555544433222222 44556666665543 4332221 22355666666666643
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.54 E-value=2.1e-16 Score=144.46 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=134.5
Q ss_pred CccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCC
Q 014524 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (423)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (423)
+++|++|+++++ .+....... +..+++|+.|++++|.+.......+..+++|++|+++++ .+.......+ ..+++|
T Consensus 87 l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L 162 (440)
T 3zyj_A 87 LRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAF-NRIPSL 162 (440)
T ss_dssp CSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTT-TTCTTC
T ss_pred CCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHh-hhCccc
Confidence 455555555544 232222112 236789999999999776544445677999999999985 3433221122 348999
Q ss_pred ceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEE
Q 014524 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (423)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (423)
++|++.++..+...... .+..+++|+.|+++++. +.. ...+..+++|+.|++++|.+.......+. .+++|++|
T Consensus 163 ~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~--l~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L 236 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCN--LRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKL 236 (440)
T ss_dssp CEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSC--CSS--CCCCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEE
T ss_pred CEeCCCCCCCcceeCcc-hhhcccccCeecCCCCc--Ccc--ccccCCCcccCEEECCCCccCccChhhhc-cCccCCEE
Confidence 99999986555443322 23457899999999986 332 22467788999999999987764433343 78899999
Q ss_pred eeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 332 GLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
+++++. ++...... ...+++|+.|++++| .++...... ...+++|+.|++++++
T Consensus 237 ~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 237 WMIQSQ-IQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTCC-CCEECTTS-STTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred ECCCCc-eeEEChhh-hcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence 999876 65432222 246789999999985 454322222 2357899999998765
No 71
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.53 E-value=1.8e-13 Score=121.12 Aligned_cols=173 Identities=12% Similarity=0.153 Sum_probs=117.8
Q ss_pred cCCCCcEEeccCcccChhHHHHhhc-----cCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHH
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIAT-----LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVI 271 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 271 (423)
..+.|+.|++++|.+++.....+.. .++|++|+++++ .+++.+...+...+++|++|++++| .+++.+...+.
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 3467888888888877766655543 267888888874 5666666666665677888888875 56666555544
Q ss_pred H----hCCCCceeccCCCcccchHHHHHH----hhcCCcccEEEccCccCChhhHHHHH---hcCCCccEEeeccCCCCC
Q 014524 272 R----GHSGLLQLDAGHCFSELSTTLLHH----MRDLKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKCLGVT 340 (423)
Q Consensus 272 ~----~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~ 340 (423)
. ..++|+.|++++|. +++..... +...++|++|++++|.+++.+...+. ...++|++|++++|. ++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHHhcCCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 3 24678888888876 55544433 35677888888888887777655443 345678888888776 77
Q ss_pred hHHHHHHH---hcCCCCcEEecCCCCCCCHHHHHHHHh
Q 014524 341 NTGITQLV---SGCVNLKTIDLTCCHSITDDAISAIAD 375 (423)
Q Consensus 341 ~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~ 375 (423)
+.+...+. ..+++|+.|++++| .+++.++..+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 76655443 34577888888874 677777777665
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=8e-17 Score=140.10 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=90.1
Q ss_pred cCCCCcEEeccCcccChhHHHHhhcc-----CCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHH
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATL-----AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVI 271 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 271 (423)
.+++|+.|++++|.+... ...+..+ ++|++|+++++. +.......+. .+++|++|+++++.......+....
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR-VFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHH
Confidence 455566666666544332 1222222 566666665532 2221111112 2566666666654211111111111
Q ss_pred --HhCCCCceeccCCCcccch---HHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHH
Q 014524 272 --RGHSGLLQLDAGHCFSELS---TTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQ 346 (423)
Q Consensus 272 --~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 346 (423)
..+++|+.|+++++. +. ......+..+++|+.|++++|.+...........+++|++|+++++. ++. +..
T Consensus 196 ~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--ip~ 270 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAG--METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ--VPK 270 (312)
T ss_dssp CTTSCTTCCEEECTTSC--CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSS--CCS
T ss_pred HhccCCCCCEEECCCCc--CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cCh--hhh
Confidence 345666666666665 33 22223345667777777777765543311111245677777777765 441 111
Q ss_pred HHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCC
Q 014524 347 LVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMIT 392 (423)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 392 (423)
.. .++|+.|++++| .+++. .. ...+++|+.|++++++ ++
T Consensus 271 ~~--~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~-l~ 309 (312)
T 1wwl_A 271 GL--PAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNP-FL 309 (312)
T ss_dssp SC--CSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCT-TT
T ss_pred hc--cCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCC-CC
Confidence 11 157888888874 44433 11 2357788888888776 54
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=1.4e-15 Score=140.32 Aligned_cols=123 Identities=16% Similarity=0.095 Sum_probs=50.5
Q ss_pred hCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCC
Q 014524 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (423)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 199 (423)
.+++|++|+++++. +.... .+..+++|++|+++++ .++... ..++|+.|+++++ .+..... ..++
T Consensus 56 ~l~~L~~L~Ls~N~-l~~~~--~l~~l~~L~~L~Ls~N-~l~~l~------~~~~L~~L~L~~N-~l~~~~~----~~l~ 120 (487)
T 3oja_A 56 PFTKLELLNLSSNV-LYETL--DLESLSTLRTLDLNNN-YVQELL------VGPSIETLHAANN-NISRVSC----SRGQ 120 (487)
T ss_dssp TCTTCCEEECTTSC-CEEEE--ECTTCTTCCEEECCSS-EEEEEE------ECTTCCEEECCSS-CCCCEEE----CCCS
T ss_pred CCCCCCEEEeeCCC-CCCCc--ccccCCCCCEEEecCC-cCCCCC------CCCCcCEEECcCC-cCCCCCc----cccC
Confidence 44555555555422 22111 1444555555555553 222211 1244555555544 2222111 1234
Q ss_pred CCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCC
Q 014524 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSR 258 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 258 (423)
+|+.|++++|.+.......+..+++|+.|+++++ .+.......+...+++|+.|++++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCC
Confidence 5555555555444333333344455555555542 232222222222244555555544
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=2.4e-16 Score=151.55 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=54.0
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhh
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADS 376 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 376 (423)
+..++.|+.|++++|.............+++|+.|+++++. ++...-. ....+++|+.|++++| .++......+ ..
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~ 540 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMSHN-NFFSLDTFPY-KC 540 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTS-CCCBCCCGGG-TT
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH-HHcCCCCCCEEECCCC-cCCCCChhHH-hC
Confidence 34455666666666542221111122245666677776654 4332111 1235666777777664 3332211112 24
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhcC-CCCCEEeccC
Q 014524 377 CRGLVCLKIESCNMITEKGLYQLGSFC-LRLEEIDLTD 413 (423)
Q Consensus 377 ~~~L~~L~l~~c~~i~~~~~~~l~~~~-~~L~~L~l~~ 413 (423)
+++|+.|++++|. ++......+. .+ ++|+.|++++
T Consensus 541 l~~L~~L~Ls~N~-l~~~~~~~l~-~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 541 LNSLQVLDYSLNH-IMTSKKQELQ-HFPSSLAFLNLTQ 576 (635)
T ss_dssp CTTCCEEECTTSC-CCBCCSSCTT-CCCTTCCEEECTT
T ss_pred CCCCCEEECCCCc-CCCCCHHHHH-hhhCcCCEEEeeC
Confidence 5667777776665 5433222222 33 4567777665
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=1.7e-15 Score=139.61 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=16.6
Q ss_pred CCCCcEEeccCcccChhHHHHhh-ccCCccEEEecC
Q 014524 198 CLDLKSLDVSYLKLTNDSFCSIA-TLAKLESLVMVG 232 (423)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~ 232 (423)
+++|+.|++++|.+....+..+. .+++|+.|++++
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 44555555555544443333333 345555555554
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=1.6e-13 Score=118.81 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=103.1
Q ss_pred CccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCC
Q 014524 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (423)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (423)
+++|++|++.++ .+.... . ...+++|+.|++++|.+.+... +..+++|++|+++++. +... ..+ ..+++|
T Consensus 40 l~~L~~L~l~~~-~i~~l~--~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~--~~~-~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIE--G-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNV--SAI-AGLQSI 109 (308)
T ss_dssp HHTCCEEECTTS-CCCCCT--T-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCC--GGG-TTCTTC
T ss_pred cCCcCEEEeeCC-CccCch--h-hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCc--hhh-cCCCCC
Confidence 566777777766 343321 1 2356777777777776554332 6667777777777643 3322 122 236777
Q ss_pred ceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEE
Q 014524 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (423)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (423)
++|+++++. +.... . ...+++|+.|+++++. +... ..+..+++|+.|++++|.+.+... ...+++|++|
T Consensus 110 ~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~--l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L 178 (308)
T 1h6u_A 110 KTLDLTSTQ-ITDVT--P-LAGLSNLQVLYLDLNQ--ITNI--SPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTL 178 (308)
T ss_dssp CEEECTTSC-CCCCG--G-GTTCTTCCEEECCSSC--CCCC--GGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred CEEECCCCC-CCCch--h-hcCCCCCCEEECCCCc--cCcC--ccccCCCCccEEEccCCcCCCChh---hcCCCCCCEE
Confidence 777777643 33221 1 3446667777776665 2221 115566666777766665554222 2256666666
Q ss_pred eeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 332 GLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
+++++. +++... ...+++|+.|++++| .+++.. .+ ..+++|+.|++++|+
T Consensus 179 ~l~~n~-l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~l-~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 179 KADDNK-ISDISP---LASLPNLIEVHLKNN-QISDVS--PL-ANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSSC-CCCCGG---GGGCTTCCEEECTTS-CCCBCG--GG-TTCTTCCEEEEEEEE
T ss_pred ECCCCc-cCcChh---hcCCCCCCEEEccCC-ccCccc--cc-cCCCCCCEEEccCCe
Confidence 666654 433211 345666666666664 333222 12 346666666666655
No 77
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.6e-12 Score=115.07 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=142.7
Q ss_pred cCCccEEEecCCCCCCchhHHHHHhc----CCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHh
Q 014524 222 LAKLESLVMVGCPCVDDTGLRFLESG----CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (423)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (423)
.++|++|+++++ .++......+... .++|++|+++++ .+++.++..+...+++|+.|++++|. +++.....+
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHH
Confidence 678999999985 5666655554442 369999999986 57888888887778899999999997 777666655
Q ss_pred h-----cCCcccEEEccCccCChhhHHHHH---hcCCCccEEeeccCCCCChHHHHHHH---hcCCCCcEEecCCCCCCC
Q 014524 298 R-----DLKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKCLGVTNTGITQLV---SGCVNLKTIDLTCCHSIT 366 (423)
Q Consensus 298 ~-----~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~ 366 (423)
. ..++|+.|++++|.+++.+...++ ...++|++|+++++. +++.+...+. ..+++|+.|++++| .++
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 3 468999999999999887776664 467899999999987 8887765544 46789999999995 789
Q ss_pred HHHHHHHHh---hCCCccEEEeccCCCCCHHHHHHHHhcC-CC---CCEEe
Q 014524 367 DDAISAIAD---SCRGLVCLKIESCNMITEKGLYQLGSFC-LR---LEEID 410 (423)
Q Consensus 367 ~~~~~~~~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~~-~~---L~~L~ 410 (423)
+.+...+.. .+++|+.|++++|. +++.++..+.... +. |+.+.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVV 274 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEEC
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhH
Confidence 888776655 46999999999998 9999998887432 11 66665
No 78
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=2.6e-15 Score=131.26 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=16.4
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEecc
Q 014524 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIES 387 (423)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 387 (423)
.+++|+.|++++|...+ .....+ ..+++|+.+.+..
T Consensus 275 ~l~~L~~L~L~~n~~~~-~iP~~l-~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLS-RLPSLI-AQLPANCIILVPP 310 (328)
T ss_dssp GCTTCCEEECTTCTTCC-CCCGGG-GGSCTTCEEECCG
T ss_pred cCCCCCEEeCCCCCchh-hccHHH-hhccCceEEeCCH
Confidence 45555556555543322 111122 2355555555553
No 79
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=5.8e-15 Score=129.05 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=18.6
Q ss_pred CCCCcEEeccCcccChhHHHHhhccCCccEEEecCC
Q 014524 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGC 233 (423)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (423)
+++|+.|++++|.+. .....+..+++|++|+++++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 556666666666444 11223445556666666553
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.1e-14 Score=126.60 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=73.5
Q ss_pred CCCCceeccCCCcccchHHHHH---HhhcCCcccEEEccCccCCh--hhHHHHHhcCCCccEEeeccCCCCChHHHHHHH
Q 014524 274 HSGLLQLDAGHCFSELSTTLLH---HMRDLKNLEAITMDGARISD--SCFQTISFNCKSLVEIGLSKCLGVTNTGITQLV 348 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 348 (423)
+++|+.|+++++.. ....... .+..+++|++|++++|.++. .....+...+++|++|+++++. ++......+.
T Consensus 168 l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~ 245 (310)
T 4glp_A 168 FPALTSLDLSDNPG-LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAP 245 (310)
T ss_dssp CTTCCEEECCSCTT-CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCS
T ss_pred CCCCCEEECCCCCC-ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHH
Confidence 45555555555542 2211111 12355666666666666542 1122223355677777776654 4332111111
Q ss_pred --hcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCCCC
Q 014524 349 --SGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG 421 (423)
Q Consensus 349 --~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~ 421 (423)
..+++|+.|++++| .++.- ... ..++|+.|++++|. ++.... ...+++|+.|++++ |.+++.|
T Consensus 246 ~~~~~~~L~~L~Ls~N-~l~~l-p~~---~~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~L~~-N~l~~~g 310 (310)
T 4glp_A 246 RCMWSSALNSLNLSFA-GLEQV-PKG---LPAKLRVLDLSSNR-LNRAPQ---PDELPEVDNLTLDG-NPFLVPG 310 (310)
T ss_dssp SCCCCTTCCCEECCSS-CCCSC-CSC---CCSCCSCEECCSCC-CCSCCC---TTSCCCCSCEECSS-TTTSCCC
T ss_pred hccCcCcCCEEECCCC-CCCch-hhh---hcCCCCEEECCCCc-CCCCch---hhhCCCccEEECcC-CCCCCCC
Confidence 11267888888774 44411 111 13688888888886 664211 24678899999998 8888765
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=8.4e-15 Score=127.26 Aligned_cols=85 Identities=9% Similarity=0.101 Sum_probs=38.5
Q ss_pred hcCCcccEEEccCccCChhhHHHHHh--cCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHh
Q 014524 298 RDLKNLEAITMDGARISDSCFQTISF--NCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIAD 375 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 375 (423)
..+++|+.|++++|.+.+.....+.. ..++|++|+++++. ++. +.. .-.++|+.|++++| .++.. .. ..
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~--lp~--~~~~~L~~L~Ls~N-~l~~~--~~-~~ 291 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQ--VPK--GLPAKLRVLDLSSN-RLNRA--PQ-PD 291 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCS--CCS--CCCSCCSCEECCSC-CCCSC--CC-TT
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCc--hhh--hhcCCCCEEECCCC-cCCCC--ch-hh
Confidence 34455555555555443321111110 12456666665544 331 100 01256666666664 33321 11 23
Q ss_pred hCCCccEEEeccCCCCC
Q 014524 376 SCRGLVCLKIESCNMIT 392 (423)
Q Consensus 376 ~~~~L~~L~l~~c~~i~ 392 (423)
.+++|+.|++++++ ++
T Consensus 292 ~l~~L~~L~L~~N~-l~ 307 (310)
T 4glp_A 292 ELPEVDNLTLDGNP-FL 307 (310)
T ss_dssp SCCCCSCEECSSTT-TS
T ss_pred hCCCccEEECcCCC-CC
Confidence 45677777777665 44
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=6.5e-13 Score=125.11 Aligned_cols=266 Identities=17% Similarity=0.082 Sum_probs=169.8
Q ss_pred CCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhh
Q 014524 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (423)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (423)
.+++.++++++. ++. ++ ....++|++|+++++. ++. + ...+++|++|+++++. ++....
T Consensus 40 ~~l~~L~ls~n~-L~~-----lp----~~l~~~L~~L~L~~N~-l~~--l---p~~l~~L~~L~Ls~N~-l~~lp~---- 98 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT-----LP----DCLPAHITTLVIPDNN-LTS--L---PALPPELRTLEVSGNQ-LTSLPV---- 98 (622)
T ss_dssp HCCCEEECCSSC-CSC-----CC----SCCCTTCSEEEECSCC-CSC--C---CCCCTTCCEEEECSCC-CSCCCC----
T ss_pred CCCcEEEecCCC-cCc-----cC----hhhCCCCcEEEecCCC-CCC--C---CCcCCCCCEEEcCCCc-CCcCCC----
Confidence 357889888743 432 21 1233789999999874 332 1 1157899999998843 432111
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCC
Q 014524 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (423)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 224 (423)
.+++|++|+++++ .++.... .+++|+.|+++++ .++... ..+++|++|++++|.+.... ..+++
T Consensus 99 ~l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N-~l~~lp-----~~l~~L~~L~Ls~N~l~~l~----~~~~~ 162 (622)
T 3g06_A 99 LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGN-QLTSLP-----VLPPGLQELSVSDNQLASLP----ALPSE 162 (622)
T ss_dssp CCTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCSCCC----CCCTT
T ss_pred CCCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCC-CCCcCC-----CCCCCCCEEECcCCcCCCcC----CccCC
Confidence 5789999999884 4443211 4688999998876 344321 23588999999998665311 13578
Q ss_pred ccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCccc
Q 014524 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304 (423)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 304 (423)
|+.|++.++ .++... ..+++|+.|+++++. ++... ...++|+.|.++++.. +.. -..+++|+
T Consensus 163 L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N~-l~~l~-----~~~~~L~~L~L~~N~l--~~l----~~~~~~L~ 224 (622)
T 3g06_A 163 LCKLWAYNN-QLTSLP-----MLPSGLQELSVSDNQ-LASLP-----TLPSELYKLWAYNNRL--TSL----PALPSGLK 224 (622)
T ss_dssp CCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCC--SSC----CCCCTTCC
T ss_pred CCEEECCCC-CCCCCc-----ccCCCCcEEECCCCC-CCCCC-----CccchhhEEECcCCcc--ccc----CCCCCCCC
Confidence 888888874 333311 446889999988753 33211 1247888888888762 210 01357889
Q ss_pred EEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEE
Q 014524 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLK 384 (423)
Q Consensus 305 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 384 (423)
.|++++|.++... ..+++|+.|+++++. ++. +...+++|+.|++++| .++. +......+++|+.|+
T Consensus 225 ~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~-L~~-----lp~~~~~L~~L~Ls~N-~L~~--lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 225 ELIVSGNRLTSLP-----VLPSELKELMVSGNR-LTS-----LPMLPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVN 290 (622)
T ss_dssp EEECCSSCCSCCC-----CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCCS--CCGGGGGSCTTCEEE
T ss_pred EEEccCCccCcCC-----CCCCcCcEEECCCCC-CCc-----CCcccccCcEEeCCCC-CCCc--CCHHHhhccccCEEE
Confidence 9999888776522 466889999998875 543 1125678999999885 4442 112233588899999
Q ss_pred eccCCCCCHHHHHHHH
Q 014524 385 IESCNMITEKGLYQLG 400 (423)
Q Consensus 385 l~~c~~i~~~~~~~l~ 400 (423)
+++|+ ++......+.
T Consensus 291 L~~N~-l~~~~~~~l~ 305 (622)
T 3g06_A 291 LEGNP-LSERTLQALR 305 (622)
T ss_dssp CCSCC-CCHHHHHHHH
T ss_pred ecCCC-CCCcCHHHHH
Confidence 99887 7766555443
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.42 E-value=4.8e-13 Score=122.09 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=35.0
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
++|++|+++++ .+... ..+..+++|++|+++++ .++.. ....++|++|+++++ .+... .. ...+++|
T Consensus 131 ~~L~~L~L~~n-~l~~l--p~~~~l~~L~~L~l~~N-~l~~l-----p~~~~~L~~L~L~~n-~l~~l--~~-~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKL--PELQNSSFLKIIDVDNN-SLKKL-----PDLPPSLEFIAAGNN-QLEEL--PE-LQNLPFL 197 (454)
T ss_dssp TTCCEEECCSS-CCSSC--CCCTTCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSC--CC-CTTCTTC
T ss_pred CCCCEEECcCC-CCCCC--cccCCCCCCCEEECCCC-cCccc-----CCCcccccEEECcCC-cCCcC--cc-ccCCCCC
Confidence 45666666653 23221 13455666666666653 23220 011235566665554 23221 11 1245555
Q ss_pred cEEeccCccc
Q 014524 202 KSLDVSYLKL 211 (423)
Q Consensus 202 ~~L~l~~~~~ 211 (423)
+.|++++|.+
T Consensus 198 ~~L~l~~N~l 207 (454)
T 1jl5_A 198 TAIYADNNSL 207 (454)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 5555555543
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=8.9e-13 Score=114.15 Aligned_cols=189 Identities=22% Similarity=0.284 Sum_probs=130.3
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCC
Q 014524 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (423)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 224 (423)
.+++|++|++.++ .++.. .. ...+++|++|+++++ .+..... ...+++|+.|++++|.+... ..+..+++
T Consensus 39 ~l~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred HcCCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 4678889998885 44432 12 345888999999877 4544332 45788999999998876653 35677889
Q ss_pred ccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCccc
Q 014524 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304 (423)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 304 (423)
|++|+++++. +.... .+ ..+++|++|+++++. +..... ...+++|+.|+++++. +.+.. .+..+++|+
T Consensus 109 L~~L~l~~n~-l~~~~--~l-~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~--l~~~~--~l~~l~~L~ 176 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVT--PL-AGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNAQ--VSDLT--PLANLSKLT 176 (308)
T ss_dssp CCEEECTTSC-CCCCG--GG-TTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC--CCCCG--GGTTCTTCC
T ss_pred CCEEECCCCC-CCCch--hh-cCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCCc--CCCCh--hhcCCCCCC
Confidence 9999998853 33321 22 447889999998753 333222 4567889999998886 33321 277888999
Q ss_pred EEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCC
Q 014524 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (423)
Q Consensus 305 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (423)
.|++++|.+.+... + ..+++|++|+++++. +++.. . ...+++|+.|++++|
T Consensus 177 ~L~l~~n~l~~~~~--l-~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 177 TLKADDNKISDISP--L-ASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp EEECCSSCCCCCGG--G-GGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEE
T ss_pred EEECCCCccCcChh--h-cCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCC
Confidence 99999887765432 3 478899999998876 55433 2 357889999998875
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.41 E-value=2.6e-13 Score=123.88 Aligned_cols=284 Identities=15% Similarity=0.124 Sum_probs=164.8
Q ss_pred CCcceEeecCCCCCChhHHHHHhhhcccccCCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhh
Q 014524 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (423)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (423)
..+++++++++. ++. + ....++|++|+++++. +.. ++ ...++|++|+++++ .+.. +.
T Consensus 71 ~~l~~L~l~~~~-l~~-----l-----p~~~~~L~~L~l~~n~-l~~--lp---~~~~~L~~L~l~~n-~l~~-----l~ 127 (454)
T 1jl5_A 71 RQAHELELNNLG-LSS-----L-----PELPPHLESLVASCNS-LTE--LP---ELPQSLKSLLVDNN-NLKA-----LS 127 (454)
T ss_dssp HTCSEEECTTSC-CSC-----C-----CSCCTTCSEEECCSSC-CSS--CC---CCCTTCCEEECCSS-CCSC-----CC
T ss_pred cCCCEEEecCCc-ccc-----C-----CCCcCCCCEEEccCCc-CCc--cc---cccCCCcEEECCCC-ccCc-----cc
Confidence 467889998854 332 2 2234789999998874 332 11 23579999999884 3432 22
Q ss_pred cC-CCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccC
Q 014524 145 FA-SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLA 223 (423)
Q Consensus 145 ~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 223 (423)
.. ++|++|+++++ .++.. .. ...+++|++|+++++ .+... ....++|+.|++++|.+... ..+..++
T Consensus 128 ~~~~~L~~L~L~~n-~l~~l--p~-~~~l~~L~~L~l~~N-~l~~l-----p~~~~~L~~L~L~~n~l~~l--~~~~~l~ 195 (454)
T 1jl5_A 128 DLPPLLEYLGVSNN-QLEKL--PE-LQNSSFLKIIDVDNN-SLKKL-----PDLPPSLEFIAAGNNQLEEL--PELQNLP 195 (454)
T ss_dssp SCCTTCCEEECCSS-CCSSC--CC-CTTCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSCCSSC--CCCTTCT
T ss_pred CCCCCCCEEECcCC-CCCCC--cc-cCCCCCCCEEECCCC-cCccc-----CCCcccccEEECcCCcCCcC--ccccCCC
Confidence 22 68999999985 45442 22 345899999999987 44431 12346999999999976652 3567799
Q ss_pred CccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcc
Q 014524 224 KLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNL 303 (423)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 303 (423)
+|++|+++++. +.. +....++|++|+++++. +.... . ...+++|+.|+++++. +.. .. ..+++|
T Consensus 196 ~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n~-l~~lp--~-~~~l~~L~~L~l~~N~--l~~--l~--~~~~~L 259 (454)
T 1jl5_A 196 FLTAIYADNNS-LKK-----LPDLPLSLESIVAGNNI-LEELP--E-LQNLPFLTTIYADNNL--LKT--LP--DLPPSL 259 (454)
T ss_dssp TCCEEECCSSC-CSS-----CCCCCTTCCEEECCSSC-CSSCC--C-CTTCTTCCEEECCSSC--CSS--CC--SCCTTC
T ss_pred CCCEEECCCCc-CCc-----CCCCcCcccEEECcCCc-CCccc--c-cCCCCCCCEEECCCCc--CCc--cc--cccccc
Confidence 99999998753 322 11223578888887753 32211 1 3346777777777765 221 00 123556
Q ss_pred cEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHH---------------HHHHHhcC-CCCcEEecCCCCCCCH
Q 014524 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTG---------------ITQLVSGC-VNLKTIDLTCCHSITD 367 (423)
Q Consensus 304 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~-~~L~~L~l~~~~~l~~ 367 (423)
+.|++++|.+... ....++|++|+++++. ++... +..+ ..+ ++|+.|++++| .++.
T Consensus 260 ~~L~l~~N~l~~l-----~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i-~~~~~~L~~L~Ls~N-~l~~ 331 (454)
T 1jl5_A 260 EALNVRDNYLTDL-----PELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNN-KLIE 331 (454)
T ss_dssp CEEECCSSCCSCC-----CCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSS-CCSC
T ss_pred CEEECCCCccccc-----CcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcc-cCCcCcCCEEECCCC-cccc
Confidence 6666666554331 1122444455444433 22100 0001 122 46777777764 3332
Q ss_pred HHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 368 DAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 368 ~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
+...+++|+.|++++|. ++. +.. .+++|++|++++ +.++.
T Consensus 332 -----lp~~~~~L~~L~L~~N~-l~~--lp~---~l~~L~~L~L~~-N~l~~ 371 (454)
T 1jl5_A 332 -----LPALPPRLERLIASFNH-LAE--VPE---LPQNLKQLHVEY-NPLRE 371 (454)
T ss_dssp -----CCCCCTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCS-SCCSS
T ss_pred -----ccccCCcCCEEECCCCc-ccc--ccc---hhhhccEEECCC-CCCCc
Confidence 12235778888888775 553 111 467788888887 55554
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=5.7e-13 Score=125.52 Aligned_cols=258 Identities=16% Similarity=0.047 Sum_probs=177.9
Q ss_pred CCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccc
Q 014524 96 RSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNL 175 (423)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 175 (423)
.++++|+++++. ++. ++. .-.++|++|+++++ .+..... .+++|++|+++++ .++... ..+++|
T Consensus 40 ~~l~~L~ls~n~-L~~--lp~--~l~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N-~l~~lp-----~~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT--LPD--CLPAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLTSLP-----VLPPGL 103 (622)
T ss_dssp HCCCEEECCSSC-CSC--CCS--CCCTTCSEEEECSC-CCSCCCC----CCTTCCEEEECSC-CCSCCC-----CCCTTC
T ss_pred CCCcEEEecCCC-cCc--cCh--hhCCCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCC-cCCcCC-----CCCCCC
Confidence 468999998774 331 111 01379999999984 3442111 4789999999995 454321 157999
Q ss_pred cccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEe
Q 014524 176 ERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIF 255 (423)
Q Consensus 176 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 255 (423)
++|+++++ .+.... ..+++|+.|++++|.+.... ..+++|++|+++++ .+.. +...+++|+.|+
T Consensus 104 ~~L~Ls~N-~l~~l~-----~~l~~L~~L~L~~N~l~~lp----~~l~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~ 167 (622)
T 3g06_A 104 LELSIFSN-PLTHLP-----ALPSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDN-QLAS-----LPALPSELCKLW 167 (622)
T ss_dssp CEEEECSC-CCCCCC-----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEE
T ss_pred CEEECcCC-cCCCCC-----CCCCCcCEEECCCCCCCcCC----CCCCCCCEEECcCC-cCCC-----cCCccCCCCEEE
Confidence 99999987 444321 15689999999999665411 13589999999986 3332 112468899999
Q ss_pred cCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeecc
Q 014524 256 VSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSK 335 (423)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 335 (423)
+.++ .++... ..+++|+.|+++++. +.. .-..+++|+.|.+++|.+... ....++|+.|++++
T Consensus 168 L~~N-~l~~l~-----~~~~~L~~L~Ls~N~--l~~----l~~~~~~L~~L~L~~N~l~~l-----~~~~~~L~~L~Ls~ 230 (622)
T 3g06_A 168 AYNN-QLTSLP-----MLPSGLQELSVSDNQ--LAS----LPTLPSELYKLWAYNNRLTSL-----PALPSGLKELIVSG 230 (622)
T ss_dssp CCSS-CCSCCC-----CCCTTCCEEECCSSC--CSC----CCCCCTTCCEEECCSSCCSSC-----CCCCTTCCEEECCS
T ss_pred CCCC-CCCCCc-----ccCCCCcEEECCCCC--CCC----CCCccchhhEEECcCCccccc-----CCCCCCCCEEEccC
Confidence 9885 344322 446899999999986 332 011357999999999976642 22458999999998
Q ss_pred CCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 014524 336 CLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCN 415 (423)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~ 415 (423)
+. ++.. ...+++|+.|++++| .++. +...+++|+.|++++|. ++.. ......+++|+.|++++ +
T Consensus 231 N~-L~~l-----p~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N~-L~~l--p~~l~~l~~L~~L~L~~-N 294 (622)
T 3g06_A 231 NR-LTSL-----PVLPSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRNQ-LTRL--PESLIHLSSETTVNLEG-N 294 (622)
T ss_dssp SC-CSCC-----CCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CCSC--CGGGGGSCTTCEEECCS-C
T ss_pred Cc-cCcC-----CCCCCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCCC-CCcC--CHHHhhccccCEEEecC-C
Confidence 76 6542 256799999999996 4442 11257899999999996 7732 22234799999999999 5
Q ss_pred CCC
Q 014524 416 GVN 418 (423)
Q Consensus 416 ~i~ 418 (423)
.++
T Consensus 295 ~l~ 297 (622)
T 3g06_A 295 PLS 297 (622)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.36 E-value=2e-14 Score=122.75 Aligned_cols=203 Identities=18% Similarity=0.213 Sum_probs=120.5
Q ss_pred ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCc
Q 014524 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (423)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (423)
++|++|+++++ .++......+ ..+++|+.|++++|.+.......+..+++|++|+++++ .+.......+ ..+++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF-SGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTT-TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCC
T ss_pred CCccEEECCCC-cccccCHhHh-ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhh-cCCcccc
Confidence 46888888876 4544332222 36788999999888766554445677888888888874 3333222222 3378888
Q ss_pred eEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchH-HHHHHhhcCCcccEEEccCccCChh---hHHHHHhcCCCc
Q 014524 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELST-TLLHHMRDLKNLEAITMDGARISDS---CFQTISFNCKSL 328 (423)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~~L 328 (423)
+|++.++. +...... ....+++|+.|+++++. +.. .....+..+++|+.|++++|.+... .+..+. ..+.|
T Consensus 104 ~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l 178 (276)
T 2z62_A 104 KLVAVETN-LASLENF-PIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLL 178 (276)
T ss_dssp EEECTTSC-CCCSTTC-CCTTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTC
T ss_pred EEECCCCC-ccccCch-hcccCCCCCEEECcCCc--cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-hcccc
Confidence 88887753 2221111 13346788888888776 332 2345667788888888888865542 333332 33333
Q ss_pred c-EEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 329 V-EIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 329 ~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
. +|+++++. ++..... .....+|+.|++++| .++.... .....+++|+.|++++++
T Consensus 179 ~l~L~ls~n~-l~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 179 NLSLDLSLNP-MNFIQPG--AFKEIRLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEECCSSC-CCEECTT--SSCSCCEEEEECCSS-CCSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred ceeeecCCCc-ccccCcc--ccCCCcccEEECCCC-ceeecCH-hHhcccccccEEEccCCc
Confidence 3 77777765 4432111 112347888888875 3442221 222357788888888655
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.33 E-value=4.2e-14 Score=120.76 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=97.4
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
++|++|++++ ..+.......+..+++|++|+++++ .++...... .. .+++|
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~--------------------------~l~~L 78 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-YQ--------------------------SLSHL 78 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTT-TT--------------------------TCTTC
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCC-cCCccCHHH-cc--------------------------CCcCC
Confidence 4577777776 3344443334556677777777763 333211111 12 33444
Q ss_pred cEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceec
Q 014524 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (423)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (423)
+.|++++|.+.......+..+++|++|++.++. +.......+ ..+++|++|+++++ .+....+...+..+++|+.|+
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEE
T ss_pred CEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhc-ccCCCCCEEECcCC-ccceecCchhhccCCCCCEEE
Confidence 444444444333332333444555555554422 111100001 22455666666553 222222222233456666666
Q ss_pred cCCCcccchH---HHHHHhhcCCccc-EEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEE
Q 014524 282 AGHCFSELST---TLLHHMRDLKNLE-AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357 (423)
Q Consensus 282 l~~~~~~~~~---~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 357 (423)
++++. ++. ..+..+..++.|. .|++++|.+.......+ ...+|++|+++++. ++... ......+++|+.|
T Consensus 156 Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L 229 (276)
T 2z62_A 156 LSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQ-LKSVP-DGIFDRLTSLQKI 229 (276)
T ss_dssp CCSSC--CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSC-CSCCC-TTTTTTCCSCCEE
T ss_pred CCCCC--CCcCCHHHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCc-eeecC-HhHhcccccccEE
Confidence 66654 222 2233333344443 67777776554322211 23478888887765 54321 1223467888888
Q ss_pred ecCCCC
Q 014524 358 DLTCCH 363 (423)
Q Consensus 358 ~l~~~~ 363 (423)
++++++
T Consensus 230 ~l~~N~ 235 (276)
T 2z62_A 230 WLHTNP 235 (276)
T ss_dssp ECCSSC
T ss_pred EccCCc
Confidence 888743
No 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.29 E-value=4.3e-11 Score=104.96 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=92.1
Q ss_pred HHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhh--cCCcccEEEccCc--c-CChh--
Q 014524 244 LESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR--DLKNLEAITMDGA--R-ISDS-- 316 (423)
Q Consensus 244 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~-~~~~-- 316 (423)
+...+|+|+.|.+.++....... + ..++|+.|.+..+. ++......+. .+|+|+.|+|+.+ . ..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHhcCCCCcEEEEeCCCCceecc---c--cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 33345666666665432111111 0 14566666666554 4555555544 5667777666421 1 1111
Q ss_pred -hHHHHH--hcCCCccEEeeccCCCCChHHHHHHHh--cCCCCcEEecCCCCCCCHHHHHHHHh---hCCCccEEEeccC
Q 014524 317 -CFQTIS--FNCKSLVEIGLSKCLGVTNTGITQLVS--GCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESC 388 (423)
Q Consensus 317 -~~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c 388 (423)
.+..+. ..+|+|+.|.+.+|. +.+.+...+.. .+|+|+.|+++. +.+++.+...+.. .+++|+.|++++|
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 111111 246788888887766 66555444442 467888888876 5678877766653 3688888888887
Q ss_pred CCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 389 NMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 389 ~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
. +++.++..+...+ ...+++++
T Consensus 318 ~-i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 318 Y-LSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp B-CCHHHHHHHHHHC--CSEEECCS
T ss_pred c-CCHHHHHHHHHHc--CCEEEecC
Confidence 6 8888888777544 44567766
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.8e-12 Score=104.37 Aligned_cols=111 Identities=18% Similarity=0.241 Sum_probs=53.4
Q ss_pred hcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 014524 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSC 377 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 377 (423)
..+++|+.|++++|.+.+.....+. .+++|++|+++++. +++.....+ ..+++|+.|++++|..+++.. . ...+
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~-l~~l 158 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSA-HDDSILTKI-NTLPKVNSIDLSYNGAITDIM--P-LKTL 158 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSSB-CBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--G-GGGC
T ss_pred hcCCCCCEEEeECCccCcccChhhc-CCCCCCEEEecCCc-cCcHhHHHH-hhCCCCCEEEccCCCCccccH--h-hcCC
Confidence 3444455555555544433333232 44555555555544 444333333 255666666666554233321 1 2246
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 378 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
++|+.|++++|. +++.. .+ ..+++|+.|++++ +.|++
T Consensus 159 ~~L~~L~l~~n~-i~~~~--~l-~~l~~L~~L~l~~-N~i~~ 195 (197)
T 4ezg_A 159 PELKSLNIQFDG-VHDYR--GI-EDFPKLNQLYAFS-QTIGG 195 (197)
T ss_dssp SSCCEEECTTBC-CCCCT--TG-GGCSSCCEEEECB-C----
T ss_pred CCCCEEECCCCC-CcChH--Hh-ccCCCCCEEEeeC-cccCC
Confidence 666666666665 54422 22 3566777777776 55554
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.26 E-value=4.2e-14 Score=117.95 Aligned_cols=129 Identities=11% Similarity=-0.005 Sum_probs=63.2
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCccc---EEEccCc-cCChhhHHHHHhcCCCcc-EEeeccCCCCChHHHHHHH
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLE---AITMDGA-RISDSCFQTISFNCKSLV-EIGLSKCLGVTNTGITQLV 348 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~ 348 (423)
+++|+.|+++++. +.. +..+..+++|+ .|++++| .+.......+. .+++|+ +|+++++. ++..... ..
T Consensus 104 l~~L~~L~l~~n~--l~~--lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~-l~~i~~~-~~ 176 (239)
T 2xwt_C 104 LPLLKFLGIFNTG--LKM--FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNG-FTSVQGY-AF 176 (239)
T ss_dssp CTTCCEEEEEEEC--CCS--CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTT-TTBSSEEEEECCSCC-CCEECTT-TT
T ss_pred CCCCCEEeCCCCC--Ccc--ccccccccccccccEEECCCCcchhhcCccccc-chhcceeEEEcCCCC-CcccCHh-hc
Confidence 4555555555543 111 11134444554 6666666 44432222222 456666 77776654 4321111 11
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhhC-CCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCC
Q 014524 349 SGCVNLKTIDLTCCHSITDDAISAIADSC-RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNG 416 (423)
Q Consensus 349 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~ 416 (423)
..++|+.|++++|..++......+ ..+ ++|+.|+++++. ++.... ..+++|+.|+++++..
T Consensus 177 -~~~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~----~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 177 -NGTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPS----KGLEHLKELIARNTWT 238 (239)
T ss_dssp -TTCEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTCC-CCCCCC----TTCTTCSEEECTTC--
T ss_pred -CCCCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCCc-cccCCh----hHhccCceeeccCccC
Confidence 125677777776533442222222 235 677777777765 543211 1467777777777543
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=6e-12 Score=101.32 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=15.7
Q ss_pred CCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 44455555554444433333334444444444444
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=9.7e-12 Score=106.61 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=106.2
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (423)
.+++|+.|+++++.+... ..+..+++|++|+++++ .+..... ...+++|+.|+++++. +.... . ...+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~ 113 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLS--S-LKDLKK 113 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGG--G-GTTCTT
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCCh--h-hccCCC
Confidence 457899999998866543 34667888899988875 3333221 3347888888888753 33321 1 345678
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcE
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (423)
|+.|+++++. +.. ...+..+++|+.|++++|.+... ..+ ..+++|++|+++++. +++... ...+++|+.
T Consensus 114 L~~L~L~~n~--i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 114 LKSLSLEHNG--ISD--INGLVHLPQLESLYLGNNKITDI--TVL-SRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQN 182 (291)
T ss_dssp CCEEECTTSC--CCC--CGGGGGCTTCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSC-CCCCGG---GTTCTTCCE
T ss_pred CCEEECCCCc--CCC--ChhhcCCCCCCEEEccCCcCCcc--hhh-ccCCCCCEEEccCCc-cccchh---hcCCCccCE
Confidence 8888887776 333 23466777788888877766553 222 366777777777765 544221 446777777
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 357 IDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 357 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
|++++| .+++. ..+ ..+++|+.|++++|+
T Consensus 183 L~L~~N-~i~~l--~~l-~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKN-HISDL--RAL-AGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSS-CCCBC--GGG-TTCTTCSEEEEEEEE
T ss_pred EECCCC-cCCCC--hhh-ccCCCCCEEECcCCc
Confidence 777774 44432 122 346777777777765
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.24 E-value=6.8e-13 Score=112.71 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=28.7
Q ss_pred ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
+++++|+++++ .+....... ...+++|+.|+++++.+.......+..+++|++|++++
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKA-FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTS-SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEECcCC-CCCeeCHHH-hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35666666655 333221111 12456666666666654432222234456666666655
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.23 E-value=9.7e-13 Score=111.77 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=19.5
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
+..+++|+.|++++|.+.......+ ..+++|+.|++++++
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAF-DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred hccCCCcCEEECCCCcCCcCCHHHh-ccccCCCEEEecCCC
Confidence 3445555666665554443221112 245566666665543
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.22 E-value=1.8e-13 Score=114.12 Aligned_cols=106 Identities=10% Similarity=0.078 Sum_probs=44.9
Q ss_pred CccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCc
Q 014524 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLK 202 (423)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 202 (423)
+|++|++++ ..+.......+..+++|++|+++++..++...... ...+++|++|+++++..+....... ...+++|+
T Consensus 32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDA-LKELPLLK 108 (239)
T ss_dssp TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTTS-EECCTTCC
T ss_pred cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHH-hCCCCCCC
Confidence 455555554 22332222234445556666655532132211111 1224555555555422332221111 12456666
Q ss_pred EEeccCcccChhHHHHhhccCCcc---EEEecCC
Q 014524 203 SLDVSYLKLTNDSFCSIATLAKLE---SLVMVGC 233 (423)
Q Consensus 203 ~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~ 233 (423)
.|++++|.+.. +..+..+++|+ .|+++++
T Consensus 109 ~L~l~~n~l~~--lp~~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 109 FLGIFNTGLKM--FPDLTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEEECCCS--CCCCTTCCBCCSEEEEEEESC
T ss_pred EEeCCCCCCcc--ccccccccccccccEEECCCC
Confidence 66666664433 11133444444 6666553
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=2.4e-12 Score=109.42 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=122.9
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (423)
.+++|+.|.+.++.+.. +..+..+++|++|+++++. +... ..+ ..+++|++|+++++ .++.... ..+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~-l~~~--~~l-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 110 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNK-LHDI--SAL-KELTNLTYLILTGN-QLQSLPN-GVFDKLTN 110 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSC-CCCC--GGG-TTCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCC-CCCc--hhh-cCCCCCCEEECCCC-ccCccCh-hHhcCCcC
Confidence 46899999999986654 2357779999999999854 4332 223 34899999999986 3433221 22345789
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcE
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (423)
|+.|+++++. +.......+..+++|+.|++++|.+.......+ ..+++|++|+++++. ++.... .....+++|+.
T Consensus 111 L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 185 (272)
T 3rfs_A 111 LKELVLVENQ--LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF-DKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQLKD 185 (272)
T ss_dssp CCEEECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCCc--CCccCHHHhccCCCCCEEECCCCccCccCHHHh-ccCccCCEEECCCCC-cCccCH-HHhcCCccCCE
Confidence 9999999887 444444456788999999999997764333222 367899999999876 553221 22346789999
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 357 IDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 357 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
|++++| .++.... .....+++|+.|++++|+
T Consensus 186 L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 186 LRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred EECCCC-cCCccCH-HHHhCCcCCCEEEccCCC
Confidence 999985 4443222 222358899999999886
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=5.6e-12 Score=107.13 Aligned_cols=33 Identities=3% Similarity=0.107 Sum_probs=15.3
Q ss_pred CCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCC
Q 014524 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (423)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (423)
+++|++|++.++. +.. +..+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~-i~~--~~~l~~l~~L~~L~l~~ 72 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKS--VQGIQYLPNVRYLALGG 72 (272)
T ss_dssp HTTCCEEECTTSC-CCC--CTTGGGCTTCCEEECTT
T ss_pred ccceeeeeeCCCC-ccc--ccccccCCCCcEEECCC
Confidence 4455556555522 221 11244455555555555
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=6.3e-11 Score=101.54 Aligned_cols=166 Identities=19% Similarity=0.174 Sum_probs=118.6
Q ss_pred CccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCC
Q 014524 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (423)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (423)
+++|+.|+++++ .+... .. ...+++|+.|++++|.+..... +..+++|++|+++++ .+... ..+ ..+++|
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDL--SSL-KDLKKL 114 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCG--GGG-TTCTTC
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCC--hhh-ccCCCC
Confidence 678899998877 44432 12 3468899999999997765432 778899999999885 34332 223 347899
Q ss_pred ceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEE
Q 014524 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (423)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (423)
++|+++++ .+... .....+++|+.|+++++. +... ..+..+++|+.|++++|.+.+... ...+++|+.|
T Consensus 115 ~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~--l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L 183 (291)
T 1h6t_A 115 KSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK--ITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNL 183 (291)
T ss_dssp CEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC--CCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred CEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc--CCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEE
Confidence 99999886 34432 123457899999999886 3332 567788999999999998766433 3478899999
Q ss_pred eeccCCCCChHHHHHHHhcCCCCcEEecCCC
Q 014524 332 GLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (423)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (423)
+++++. +++. .. ...+++|+.|++++|
T Consensus 184 ~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 184 YLSKNH-ISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSC-CCBC--GG-GTTCTTCSEEEEEEE
T ss_pred ECCCCc-CCCC--hh-hccCCCCCEEECcCC
Confidence 998876 6653 22 457889999999885
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=2e-11 Score=114.95 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=114.8
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (423)
.+++|+.|++.++.+... ..+..+++|+.|+++++. +..... + ..+++|+.|+++++ .+.... .+..+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~-l~~~~~--l-~~l~~L~~L~Ls~N-~l~~l~---~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK-LTDIKP--L-TNLKNLGWLFLDEN-KIKDLS---SLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSC-CCCCGG--G-GGCTTCCEEECCSS-CCCCCT---TSTTCTT
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCC-CCCChh--h-ccCCCCCEEECcCC-CCCCCh---hhccCCC
Confidence 568899999999866543 357779999999998853 333221 3 34889999999886 343322 2345788
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcE
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (423)
|+.|+++++. +.. +..+..+++|+.|++++|.+... ..+ ..+++|+.|+|+++. ++.... ...+++|+.
T Consensus 111 L~~L~Ls~N~--l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~ 179 (605)
T 1m9s_A 111 LKSLSLEHNG--ISD--INGLVHLPQLESLYLGNNKITDI--TVL-SRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQN 179 (605)
T ss_dssp CCEEECTTSC--CCC--CGGGGGCTTCSEEECCSSCCCCC--GGG-GSCTTCSEEECCSSC-CCCCGG---GTTCTTCCE
T ss_pred CCEEEecCCC--CCC--CccccCCCccCEEECCCCccCCc--hhh-cccCCCCEEECcCCc-CCCchh---hccCCCCCE
Confidence 8888888876 332 24577788888888888876654 223 367888888888775 544322 457788888
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCC
Q 014524 357 IDLTCCHSITDDAISAIADSCRGLVCLKIESCNMIT 392 (423)
Q Consensus 357 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 392 (423)
|+|++| .+++. ..+ ..+++|+.|++++|+ ++
T Consensus 180 L~Ls~N-~i~~l--~~l-~~l~~L~~L~L~~N~-l~ 210 (605)
T 1m9s_A 180 LYLSKN-HISDL--RAL-AGLKNLDVLELFSQE-CL 210 (605)
T ss_dssp EECCSS-CCCBC--GGG-TTCTTCSEEECCSEE-EE
T ss_pred EECcCC-CCCCC--hHH-ccCCCCCEEEccCCc-Cc
Confidence 888875 44432 222 357888888888776 44
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.17 E-value=2.4e-12 Score=110.30 Aligned_cols=201 Identities=19% Similarity=0.097 Sum_probs=102.2
Q ss_pred hhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhcc
Q 014524 143 LSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL 222 (423)
Q Consensus 143 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 222 (423)
+.++++++++++.+ ..++.... ...++++.|+++++ .+.......+ ..+++|+.|++++|.+..... ...+
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~----~~~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~--~~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPP----DLPKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRAELTKLQV--DGTL 76 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCS----CCCTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTSCCCEEEC--CSCC
T ss_pred ccccCCccEEECCC-CCCCcCCC----CCCCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCCccCcccC--CCCC
Confidence 34567888888877 34433110 01356777777766 3433222222 356778888887775543221 2456
Q ss_pred CCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCc
Q 014524 223 AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302 (423)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 302 (423)
++|+.|+++++ .+... ......+++|+.|+++++ .++.... ..+..+++|+.|+++++. +.......+..+++
T Consensus 77 ~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQSL--PLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGNE--LKTLPPGLLTPTPK 149 (290)
T ss_dssp TTCCEEECCSS-CCSSC--CCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTSC--CCCCCTTTTTTCTT
T ss_pred CcCCEEECCCC-cCCcC--chhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCCC--CCccChhhcccccC
Confidence 77777777764 22211 111233567777777664 2222111 112335666777666664 33322333455666
Q ss_pred ccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCC
Q 014524 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH 363 (423)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 363 (423)
|+.|++++|.+...... ....+++|+.|+++++. ++. +..-....++|+.|++.+++
T Consensus 150 L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~L~~N~-l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAG-LLNGLENLDTLLLQENS-LYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSCCSCCCTT-TTTTCTTCCEEECCSSC-CCC--CCTTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCcCCccCHH-HhcCcCCCCEEECCCCc-CCc--cChhhcccccCCeEEeCCCC
Confidence 66666666655432211 11245666666666654 331 11111234556666666544
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=1.6e-10 Score=108.80 Aligned_cols=168 Identities=18% Similarity=0.195 Sum_probs=85.6
Q ss_pred cCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCC
Q 014524 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (423)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 224 (423)
.+++|+.|+++++ .+.... . ...+++|+.|+++++ .+..... ...+++|+.|++++|.+... ..+..+++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQ--G-IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENKIKDL--SSLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCT--T-GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSCCCCC--TTSTTCTT
T ss_pred cCCCCCEEECcCC-CCCCCh--H-HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCCCCCC--hhhccCCC
Confidence 4567777777764 333321 1 234677777777765 3333221 34667777777777755432 24555666
Q ss_pred ccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCccc
Q 014524 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304 (423)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 304 (423)
|+.|+++++. +... ..+. .+++|+.|+++++ .+... ..+..+++|+.|+++++. +..... +..+++|+
T Consensus 111 L~~L~Ls~N~-l~~l--~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 111 LKSLSLEHNG-ISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQ 178 (605)
T ss_dssp CCEEECTTSC-CCCC--GGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCC
T ss_pred CCEEEecCCC-CCCC--cccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc--CCCchh--hccCCCCC
Confidence 6666666542 2221 1122 2566666666654 23222 122345556666665554 222111 45555566
Q ss_pred EEEccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 305 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
.|+|++|.+.+. ..+ ..+++|+.|+++++.
T Consensus 179 ~L~Ls~N~i~~l--~~l-~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 179 NLYLSKNHISDL--RAL-AGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCBC--GGG-TTCTTCSEEECCSEE
T ss_pred EEECcCCCCCCC--hHH-ccCCCCCEEEccCCc
Confidence 666655554442 122 245555555555543
No 103
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.13 E-value=7.9e-10 Score=87.57 Aligned_cols=125 Identities=12% Similarity=0.206 Sum_probs=68.9
Q ss_pred HHHHHHhCCCCceeccCCCcccchHHHHHH----hhcCCcccEEEccCccCChhhHHHHHh---cCCCccEEeeccCCCC
Q 014524 267 LISVIRGHSGLLQLDAGHCFSELSTTLLHH----MRDLKNLEAITMDGARISDSCFQTISF---NCKSLVEIGLSKCLGV 339 (423)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~ 339 (423)
+.......+.|++|+++++.. +++..... +...++|++|++++|.+++++...++. ..++|++|+++++. +
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-I 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred HHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence 344445556677777766622 55443333 334566666666666666665544432 34566666666655 6
Q ss_pred ChHHHHHHHh---cCCCCcEEec--CCCCCCCHHHHHHHHhh---CCCccEEEeccCCCCCHHH
Q 014524 340 TNTGITQLVS---GCVNLKTIDL--TCCHSITDDAISAIADS---CRGLVCLKIESCNMITEKG 395 (423)
Q Consensus 340 ~~~~~~~~~~---~~~~L~~L~l--~~~~~l~~~~~~~~~~~---~~~L~~L~l~~c~~i~~~~ 395 (423)
++.+...+.. ..+.|+.|++ ++ +.+++++...+.+. .++|++|++++|. +++.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 6666544433 3356666666 43 45666654444432 4566666666665 55443
No 104
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.12 E-value=8.1e-11 Score=103.22 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=108.6
Q ss_pred hHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHh-cCCCccEEeeccCCC--CC--
Q 014524 266 GLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISF-NCKSLVEIGLSKCLG--VT-- 340 (423)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~--~~-- 340 (423)
.+..+...+|+|+.|.+.++.. ... ..+ ..++|++|.+..+.+++..+..+.. .+|+|++|+|+.+.+ ..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~-l~l---~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNN-LSI---GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBT-CBC---CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred CHHHHHhcCCCCcEEEEeCCCC-cee---ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch
Confidence 3567778899999999988642 211 112 3789999999999999988888874 689999999863211 11
Q ss_pred -hHHHHHHH--hcCCCCcEEecCCCCCCCHHHHHHHHh--hCCCccEEEeccCCCCCHHHHHHHHh---cCCCCCEEecc
Q 014524 341 -NTGITQLV--SGCVNLKTIDLTCCHSITDDAISAIAD--SCRGLVCLKIESCNMITEKGLYQLGS---FCLRLEEIDLT 412 (423)
Q Consensus 341 -~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~L~~L~l~ 412 (423)
...+..+. ..+|+|+.|++.+| .+++.....+.. .+|+|+.|+++.|. +++.+...+.. .+++|+.|+++
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECC
Confidence 11122222 25799999999985 566666666664 47899999998876 99988877763 47999999999
Q ss_pred CCCCCCCCC
Q 014524 413 DCNGVNDKG 421 (423)
Q Consensus 413 ~c~~i~~~~ 421 (423)
+| .+++.|
T Consensus 316 ~n-~i~d~~ 323 (362)
T 2ra8_A 316 YN-YLSDEM 323 (362)
T ss_dssp SB-BCCHHH
T ss_pred CC-cCCHHH
Confidence 85 788765
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.09 E-value=1.3e-11 Score=105.81 Aligned_cols=103 Identities=24% Similarity=0.249 Sum_probs=46.6
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 201 (423)
+++++|++++ ..+.......+..+++|++|+++++ .++..... ..+++|++|+++++ .+... ......+++|
T Consensus 31 ~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSL--PLLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSC--CCCTTTCTTC
T ss_pred CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCC-cCCcC--chhhccCCCC
Confidence 3555555555 2233333334455566666666652 33321110 23455555555544 22211 1111245566
Q ss_pred cEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
+.|++++|.+.......+..+++|++|++++
T Consensus 103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp CEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 6666666654433223344455555555554
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=9.5e-11 Score=89.66 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=57.8
Q ss_pred hcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 014524 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSC 377 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 377 (423)
..+++|+.|++++|.+... ..+ ..+++|++|+++++. ++.. +......+++|+.|++++| .+++.........+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l 112 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANL-PKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL 112 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTC-CCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred hhcCCCcEEECcCCCCCCc--hhh-hcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence 4455566666666655443 222 255666666666655 4332 2333345667777777764 34442221222356
Q ss_pred CCccEEEeccCCCCCHHHH--HHHHhcCCCCCEEecc
Q 014524 378 RGLVCLKIESCNMITEKGL--YQLGSFCLRLEEIDLT 412 (423)
Q Consensus 378 ~~L~~L~l~~c~~i~~~~~--~~l~~~~~~L~~L~l~ 412 (423)
++|+.|++++|. ++.... ......+++|+.|+++
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 777777777765 554322 1233367777777765
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.03 E-value=5e-11 Score=99.98 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=36.5
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVN 353 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 353 (423)
+++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|+++++. ++.... .....+++
T Consensus 106 l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~ 180 (251)
T 3m19_A 106 LTQLDKLYLGGNQ--LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQ-LQSVPH-GAFDRLGK 180 (251)
T ss_dssp CTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC-CSCCCT-TTTTTCTT
T ss_pred cCCCCEEEcCCCc--CCCcChhHhccCCcccEEECcCCcCCccCHHHcC-cCcCCCEEECCCCc-CCccCH-HHHhCCCC
Confidence 4455555555443 2222222234455555555555544432211121 44555555555543 332111 11234555
Q ss_pred CcEEecCCC
Q 014524 354 LKTIDLTCC 362 (423)
Q Consensus 354 L~~L~l~~~ 362 (423)
|+.|++++|
T Consensus 181 L~~L~l~~N 189 (251)
T 3m19_A 181 LQTITLFGN 189 (251)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeeCC
Confidence 666666554
No 108
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.03 E-value=9.5e-09 Score=81.31 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=80.4
Q ss_pred HHHHHHhhcCCcccEEEccCc-cCChhhHHHHHh---cCCCccEEeeccCCCCChHHHHHHH---hcCCCCcEEecCCCC
Q 014524 291 TTLLHHMRDLKNLEAITMDGA-RISDSCFQTISF---NCKSLVEIGLSKCLGVTNTGITQLV---SGCVNLKTIDLTCCH 363 (423)
Q Consensus 291 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 363 (423)
......+...++|+.|++++| .+++.+...++. ..++|++|+++++. +++.+...+. ...++|+.|++++ +
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~-N 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES-N 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC-C
Confidence 344455666777777777777 777766655542 35677777777766 7776654443 3446777777777 3
Q ss_pred CCCHHHHHHHHhh---CCCccEEEe--ccCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCCCC
Q 014524 364 SITDDAISAIADS---CRGLVCLKI--ESCNMITEKGLYQLGS---FCLRLEEIDLTDCNGVNDK 420 (423)
Q Consensus 364 ~l~~~~~~~~~~~---~~~L~~L~l--~~c~~i~~~~~~~l~~---~~~~L~~L~l~~c~~i~~~ 420 (423)
.+++.++..+++. .++|+.|++ ++|. +++.+...+.. ..+.|++|++++ +.+++.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~-n~i~~~ 166 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHF-TQQGPR 166 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCC-SSHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccC-CCCChH
Confidence 6777776666554 356777777 5555 77766555543 356777777777 455443
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.99 E-value=7.2e-11 Score=99.02 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=70.0
Q ss_pred CCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCcc
Q 014524 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (423)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 226 (423)
++++.|+++++ .++...... ...+++|++|+++++ .+....... ...+++|+.|++++|.+.......+..+++|+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDAT-FRGLTKLTWLNLDYN-QLQTLSAGV-FDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEccCC-CcCccCHhH-hcCcccCCEEECCCC-cCCccCHhH-hccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 46777777763 333321111 123555666665554 232221111 12445555555555544433222333445555
Q ss_pred EEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEE
Q 014524 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAI 306 (423)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 306 (423)
+|+++++ . ++.... ..+..+++|+.|+++++. +.......+..+++|+.|
T Consensus 111 ~L~L~~N-~--------------------------l~~~~~-~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 111 KLYLGGN-Q--------------------------LKSLPS-GVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp EEECCSS-C--------------------------CCCCCT-TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEE
T ss_pred EEEcCCC-c--------------------------CCCcCh-hHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEE
Confidence 5555442 2 221110 111224555555555543 232222234455666666
Q ss_pred EccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 307 TMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 307 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
++++|.+.......+ ..+++|+.|+++++.
T Consensus 161 ~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQLQSVPHGAF-DRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSCCSCCCTTTT-TTCTTCCEEECCSCC
T ss_pred ECCCCcCCccCHHHH-hCCCCCCEEEeeCCc
Confidence 666665443222222 245666677666654
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=3e-10 Score=95.71 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=24.5
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
+..+++|+.|++++|.+++.. .+ ..+++|+.|+++++. +++. .....+++|+.|++++
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~~--~l-~~l~~L~~L~L~~N~-i~~~---~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSIV--ML-GFLSKLEVLDLHGNE-ITNT---GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBCG--GG-GGCTTCCEEECTTSC-CCBC---TTSTTCCCCCEEEEEE
T ss_pred hcCcccccEEECCCCcCCCCh--HH-ccCCCCCEEECCCCc-Ccch---HHhccCCCCCEEeCCC
Confidence 444455555555555443321 11 234455555554443 3332 1122344455554444
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.97 E-value=2.5e-10 Score=87.32 Aligned_cols=58 Identities=26% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCC
Q 014524 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (423)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (423)
.+++++|+++++. +.+..++.....+++|++|+++++ .+... ..+..+++|++|++++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~ 73 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSD 73 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCS
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCC
Confidence 3455555555542 221111112224455555555553 23222 3344455555555555
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.93 E-value=1.5e-10 Score=90.61 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=64.7
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHH-HHHHHHh
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDD-AISAIAD 375 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~ 375 (423)
+..+++|+.|++++|.+... .. ...+++|++|+++++. ++.. +......+++|+.|++++| .+++. .+..+ .
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l-~ 117 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--SN-LPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPL-K 117 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--SS-CCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGG-S
T ss_pred HHhCCCCCEEeCcCCCCCCh--hh-hccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHH-h
Confidence 34556666666666655543 22 2356677777777665 4432 2333445777788877775 44432 11222 2
Q ss_pred hCCCccEEEeccCCCCCHHHH--HHHHhcCCCCCEEeccCCC
Q 014524 376 SCRGLVCLKIESCNMITEKGL--YQLGSFCLRLEEIDLTDCN 415 (423)
Q Consensus 376 ~~~~L~~L~l~~c~~i~~~~~--~~l~~~~~~L~~L~l~~c~ 415 (423)
.+++|+.|++++|. ++.... ......+++|+.|++++|.
T Consensus 118 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 118 KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 47788888888776 554322 1234478888888888753
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=1.7e-11 Score=107.34 Aligned_cols=287 Identities=18% Similarity=0.129 Sum_probs=140.7
Q ss_pred CCCccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCC--hHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHh-
Q 014524 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFG--DREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVR- 171 (423)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 171 (423)
..++++|.+.+. +....+..+...+++|+.|++++.. +. .... ..++.++.+.+.. ..+.+. ....
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~---~~~~~~~~~~~~~-~~I~~~----aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKA---GTYPNGKFYIYMA-NFVPAY----AFSNV 92 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESS---SSSGGGCCEEECT-TEECTT----TTEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcce-eEEecCcc---ccccccccccccc-cccCHH----Hhccc
Confidence 356777777753 5555566655447788888887632 22 0000 0111122222222 122221 1234
Q ss_pred -------CccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCC-CCchhHH-
Q 014524 172 -------CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPC-VDDTGLR- 242 (423)
Q Consensus 172 -------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~- 242 (423)
|++|++|.+.. .+...+-..+ ..|++|+.+++.++.+..-....+..+.++..+....... .....+.
T Consensus 93 ~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp ETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred ccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 77888888765 3333222222 4678888888887754433223344455555554432000 0000000
Q ss_pred HHHhcCCCCc-eEecCCCcccCcchHHHHHHh---CCCCceeccCCCcccchHHHHHHhh-cCCcccEEEccCccCChhh
Q 014524 243 FLESGCPLLK-TIFVSRCKFVSSTGLISVIRG---HSGLLQLDAGHCFSELSTTLLHHMR-DLKNLEAITMDGARISDSC 317 (423)
Q Consensus 243 ~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 317 (423)
.....|..|+ .+.+.....+. ..+... ..+++.+.+.+. +.......+. .+++|+.+++.++.+..-+
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~----~~~~~~~~~~~~~~~l~~~~~---l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLE----DEIMKAGLQPRDINFLTIEGK---LDNADFKLIRDYMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHH----HHHHHTTCCGGGCSEEEEEEC---CCHHHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred cccccccccceeEEecCCCcHH----HHHhhcccCccccceEEEeee---ecHHHHHHHHHhcCCCeEEECCCCCcceec
Confidence 0011245555 44443321111 111111 245555555543 2333333333 3778888888776544333
Q ss_pred HHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCc-EEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHH
Q 014524 318 FQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLK-TIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGL 396 (423)
Q Consensus 318 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~ 396 (423)
-..+. .|++|+++++... ++..+-.. ...|++|+ .+.+.+ .++.-....+. .|++|+.|++..+. ++..+-
T Consensus 243 ~~aF~-~~~~L~~l~l~~n--i~~I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~l~l~~n~-i~~I~~ 314 (329)
T 3sb4_A 243 DFTFA-QKKYLLKIKLPHN--LKTIGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFM-GCDNLRYVLATGDK-ITTLGD 314 (329)
T ss_dssp TTTTT-TCTTCCEEECCTT--CCEECTTT-TTTCTTCCEEEEECT--TCCEECTTTTT-TCTTEEEEEECSSC-CCEECT
T ss_pred Hhhhh-CCCCCCEEECCcc--cceehHHH-hhCChhccEEEEEcc--cceEEchhhhh-CCccCCEEEeCCCc-cCccch
Confidence 33333 6778888888653 33222122 24678888 888874 44332222232 58888888887654 554443
Q ss_pred HHHHhcCCCCCEEec
Q 014524 397 YQLGSFCLRLEEIDL 411 (423)
Q Consensus 397 ~~l~~~~~~L~~L~l 411 (423)
..+. +|++|+.|+.
T Consensus 315 ~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFG-NGVPSKLIYK 328 (329)
T ss_dssp TTTC-TTCCCCEEEC
T ss_pred hhhc-CCcchhhhcc
Confidence 3333 7888888763
No 114
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.91 E-value=6e-10 Score=67.57 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCCccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhh
Q 014524 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (423)
Q Consensus 3 ~~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~ 45 (423)
+...|..||+|++.+||+||+ .+|+.++++|||+|+.+....
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~ 46 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDE 46 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCG
T ss_pred CCCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCh
Confidence 356899999999999999999 999999999999999987543
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=7.6e-10 Score=86.49 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCCcEEeccCcccChhHHH-HhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCC
Q 014524 199 LDLKSLDVSYLKLTNDSFC-SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (423)
++|+.|++++|.+.+..+. .+..+++|+.|+++++. +... ..+ ..+++|++|+++++. +... +......+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNL-PKLPKLKKLELSENR-IFGG-LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSC-CCCSSCCEEEEESCC-CCSC-CCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhh-ccCCCCCEEECcCCc-CchH-HHHHHhhCCCC
Confidence 4455555555544311111 12345555555555432 2221 111 224556666665532 2221 22333345666
Q ss_pred ceeccCCCcccchH-HHHHHhhcCCcccEEEccCccCChhhH--HHHHhcCCCccEEeeccCC
Q 014524 278 LQLDAGHCFSELST-TLLHHMRDLKNLEAITMDGARISDSCF--QTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 278 ~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~ 337 (423)
+.|+++++. +.. .....+..+++|+.|++++|.+..... ......+++|++|+++++.
T Consensus 98 ~~L~Ls~N~--l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNK--LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSS--CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCc--cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666666654 332 122455666777777777776554322 1233367777777777654
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.84 E-value=2.3e-11 Score=107.37 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=105.5
Q ss_pred CccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCc
Q 014524 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLK 202 (423)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 202 (423)
++++|++++ ..++......+..+++|++|+|+++.-.+... ......+++++++....+..+...... ....+++|+
T Consensus 31 ~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~L~ 107 (350)
T 4ay9_X 31 NAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQ 107 (350)
T ss_dssp TCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTT-SBCCCTTCC
T ss_pred CCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCch-hhhhccccc
Confidence 455555554 23333222234455566666665532111110 011122344444333322233222111 123566777
Q ss_pred EEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceecc
Q 014524 203 SLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDA 282 (423)
Q Consensus 203 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (423)
.|++++|.+.......+....++..+++.++..+.......+......++.|+++++ .++...... ....+|+.|.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~--f~~~~L~~l~l 184 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSA--FNGTQLDELNL 184 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTS--STTEEEEEEEC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhh--ccccchhHHhh
Confidence 777777755432222223345566666665444332221112221245677777763 333221111 12356777777
Q ss_pred CCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 283 GHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
.++.. ++......+..+++|+.|++++|.++.-.. ..+.+|++|.+.++.++.... . ...+++|+.+++.+
T Consensus 185 ~~~n~-l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 185 SDNNN-LEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP--T-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTT-CCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC--C-TTTCCSCCEEECSC
T ss_pred ccCCc-ccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC--C-chhCcChhhCcCCC
Confidence 65443 333333445677788888888886554221 134566677666554443211 1 23567777777764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.82 E-value=5.8e-09 Score=87.79 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=28.8
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 337 (423)
+++|+.|+++++. +++. ..+..+++|+.|++++|.+.+. ..+ ..+++|+.|+++++.
T Consensus 127 l~~L~~L~Ls~N~--i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l-~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 127 LKNLEILSIRNNK--LKSI--VMLGFLSKLEVLDLHGNEITNT--GGL-TRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTCCEEECTTSC--CCBC--GGGGGCTTCCEEECTTSCCCBC--TTS-TTCCCCCEEEEEEEE
T ss_pred cccccEEECCCCc--CCCC--hHHccCCCCCEEECCCCcCcch--HHh-ccCCCCCEEeCCCCc
Confidence 4555555555544 2221 2345556666666666655443 112 245566666665543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=3.6e-10 Score=105.70 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=51.1
Q ss_pred CCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhh-HHHHHhcCC
Q 014524 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSC-FQTISFNCK 326 (423)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~ 326 (423)
+++|+.|+++++ .++. ++..+..+++|+.|+++++. ++. +..+..+++|+.|++++|.++... ...+. .++
T Consensus 462 l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~--l~~--lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~ 533 (567)
T 1dce_A 462 LLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNA--LEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLV-SCP 533 (567)
T ss_dssp GTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSC--CCC--CGGGTTCSSCCEEECCSSCCCSSSTTGGGG-GCT
T ss_pred cccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCCC--CCC--CcccCCCCCCcEEECCCCCCCCCCCcHHHh-cCC
Confidence 455555555543 2221 11223345666666666654 222 124556666666666666655432 22232 566
Q ss_pred CccEEeeccCCCCChH--HHHHHHhcCCCCcEEe
Q 014524 327 SLVEIGLSKCLGVTNT--GITQLVSGCVNLKTID 358 (423)
Q Consensus 327 ~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~ 358 (423)
+|+.|+++++. ++.. ....+...+|+|+.|+
T Consensus 534 ~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 534 RLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 67777776654 3321 1223334567777665
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.77 E-value=3.3e-10 Score=105.97 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCc
Q 014524 276 GLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLK 355 (423)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 355 (423)
.|+.|+++++. ++. +..+..+++|+.|++++|.+..- ...+ ..+++|+.|+++++. ++. +. -...+++|+
T Consensus 442 ~L~~L~Ls~n~--l~~--lp~~~~l~~L~~L~Ls~N~l~~l-p~~~-~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKD--LTV--LCHLEQLLLVTHLDLSHNRLRAL-PPAL-AALRCLEVLQASDNA-LEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSC--CSS--CCCGGGGTTCCEEECCSSCCCCC-CGGG-GGCTTCCEEECCSSC-CCC--CG-GGTTCSSCC
T ss_pred CceEEEecCCC--CCC--CcCccccccCcEeecCccccccc-chhh-hcCCCCCEEECCCCC-CCC--Cc-ccCCCCCCc
Confidence 46677776664 332 11266677777777777766521 1122 367788888887765 554 22 234678888
Q ss_pred EEecCCCCCCCHHH-HHHHHhhCCCccEEEeccCCCCCHH--HHHHHHhcCCCCCEEec
Q 014524 356 TIDLTCCHSITDDA-ISAIADSCRGLVCLKIESCNMITEK--GLYQLGSFCLRLEEIDL 411 (423)
Q Consensus 356 ~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~i~~~--~~~~l~~~~~~L~~L~l 411 (423)
.|++++| .++... +..+. .+++|+.|++++|+ ++.. ....+...+|+|+.|++
T Consensus 512 ~L~Ls~N-~l~~~~~p~~l~-~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNN-RLQQSAAIQPLV-SCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSS-CCCSSSTTGGGG-GCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCC-CCCCCCCcHHHh-cCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 8888874 444332 23333 57888888888876 5432 22334445788888764
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.75 E-value=9.2e-10 Score=89.36 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=16.0
Q ss_pred CCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
++|+.|+++++.+.......+..+++|++|++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC
Confidence 3555555555544332222233455555555554
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=6.6e-10 Score=97.14 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=74.5
Q ss_pred cCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 014524 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCR 378 (423)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 378 (423)
...++..+.+.+. +....+..+...|++|+++++.++. ++..+-.. ...|++|+.|++.++ ++.-+-..+ ..|+
T Consensus 200 ~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF-~~~~ 273 (329)
T 3sb4_A 200 QPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQRVF-SNCG 273 (329)
T ss_dssp CGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTT-TTTCTTCCEEECCTT--CCEECTTTT-TTCT
T ss_pred CccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhh-hhCCCCCCEEECCcc--cceehHHHh-hCCh
Confidence 3556667776655 4555566666679999999998754 44322222 357899999999863 443333333 3689
Q ss_pred Ccc-EEEeccCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCC
Q 014524 379 GLV-CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (423)
Q Consensus 379 ~L~-~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (423)
+|+ .+.+.. .++..+-..+. +|++|+.|++++ ++++.
T Consensus 274 ~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 274 RLAGTLELPA--SVTAIEFGAFM-GCDNLRYVLATG-DKITT 311 (329)
T ss_dssp TCCEEEEECT--TCCEECTTTTT-TCTTEEEEEECS-SCCCE
T ss_pred hccEEEEEcc--cceEEchhhhh-CCccCCEEEeCC-CccCc
Confidence 999 999987 36544434444 899999999977 66654
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=5.9e-10 Score=90.50 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=17.4
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
.+++|+.|++++|.+.......+..+++|++|++++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 345555555555544432222234455555555554
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.68 E-value=4.6e-09 Score=85.87 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=8.0
Q ss_pred hhcCCcccEEEccCccC
Q 014524 297 MRDLKNLEAITMDGARI 313 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~ 313 (423)
+..+++|+.|++++|.+
T Consensus 124 ~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred cCCCCCCCEEECCCCcC
Confidence 33444455555554443
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=4e-09 Score=93.40 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=50.3
Q ss_pred ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCc
Q 014524 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (423)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (423)
+.++.|+++++ .++......+...+++|+.|++++|.+.......+..+++|++|+++++ .+.......+ ..+++|+
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLF-SDLQALE 115 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCC
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHh-CCCcCCC
Confidence 34666666665 3433222111114566777777766555443334555666666666653 2222111111 2255566
Q ss_pred eEecCCCcccCcchHHHHHHhCCCCceeccCCCc
Q 014524 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCF 286 (423)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (423)
.|+++++ .+..... ..+..+++|+.|+++++.
T Consensus 116 ~L~L~~N-~i~~~~~-~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 116 VLLLYNN-HIVVVDR-NAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp EEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cccEECH-HHhCCcccCCEEECCCCc
Confidence 6666553 2222111 111234555555555543
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.64 E-value=5.9e-09 Score=85.22 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=30.5
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRC 259 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 259 (423)
.+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+ ..+++|+.|++.++
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCC
Confidence 4566666666666554443344555666666666653 2222111111 22556666666554
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.64 E-value=2.6e-09 Score=87.93 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=89.8
Q ss_pred CCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCC
Q 014524 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (423)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 327 (423)
.++|+.|+++++ .+..... ..+..+++|+.|+++++. +.......+..+++|+.|++++|.+.......+ ..+++
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N~--l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF-DRLVH 113 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred CCCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCCC--CCCcChhhcccCCCcCEEECCCCcCCccChhHh-Ccchh
Confidence 378999999985 3443221 223457899999999886 443333456788999999999998764332222 36789
Q ss_pred ccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
|+.|+++++. ++. +......+++|+.|++++| .++.... .....+++|+.|++++++
T Consensus 114 L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 114 LKELFMCCNK-LTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred hCeEeccCCc-ccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 9999999876 552 2222357899999999985 4443222 222357899999999877
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.64 E-value=4.5e-09 Score=93.07 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=101.6
Q ss_pred CCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCcc
Q 014524 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (423)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 226 (423)
+.++.|++++ ..++......+...+++|+.|+++++ .+.......+ ..+++|+.|++++|.+.......+..+++|+
T Consensus 39 ~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 5689999998 45655433222225889999999887 4544332222 4688999999999977665445577899999
Q ss_pred EEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHH--HHhCCCCceeccCCCcccchHHHHHHhhcCCc--
Q 014524 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISV--IRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN-- 302 (423)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-- 302 (423)
.|+++++ .+.......+ ..+++|+.|+++++ .+.......+ ...+++|+.|+++++. +.......+..++.
T Consensus 116 ~L~L~~N-~i~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 116 VLLLYNN-HIVVVDRNAF-EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK--LKKLPLTDLQKLPAWV 190 (361)
T ss_dssp EEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC--CCCCCHHHHHHSCHHH
T ss_pred EEECCCC-cccEECHHHh-CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC--CCccCHHHhhhccHhh
Confidence 9999985 4433222222 34799999999885 3433221111 1346788888888775 44333445555665
Q ss_pred ccEEEccCccCC
Q 014524 303 LEAITMDGARIS 314 (423)
Q Consensus 303 L~~L~l~~~~~~ 314 (423)
++.|++++|.+.
T Consensus 191 l~~l~l~~N~~~ 202 (361)
T 2xot_A 191 KNGLYLHNNPLE 202 (361)
T ss_dssp HTTEECCSSCEE
T ss_pred cceEEecCCCcc
Confidence 367777777644
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=2e-08 Score=79.01 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=29.1
Q ss_pred CCCCceeccCCCcccchH-HHHHHhhcCCcccEEEccCccCChhhH--HHHHhcCCCccEEeeccCC
Q 014524 274 HSGLLQLDAGHCFSELST-TLLHHMRDLKNLEAITMDGARISDSCF--QTISFNCKSLVEIGLSKCL 337 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~ 337 (423)
+++|+.|+++++. +.. .....+..+++|+.|++++|.+..... ......+++|+.|+++++.
T Consensus 87 l~~L~~L~L~~N~--i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNS--LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCC--CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCc--CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 4455555555443 211 111234455666666666665432111 1122356666666666544
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=3.6e-08 Score=91.85 Aligned_cols=134 Identities=17% Similarity=0.065 Sum_probs=70.5
Q ss_pred CCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCC
Q 014524 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (423)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 200 (423)
+.+|+.|+++++ .+.... ..+ +++|++|+++++ .++... ..+++|+.|+++++ .++... .+ ..+
T Consensus 58 ~~~L~~L~Ls~n-~L~~lp-~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip--~l---~~~ 121 (571)
T 3cvr_A 58 INQFSELQLNRL-NLSSLP-DNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLP--EL---PAS 121 (571)
T ss_dssp HTTCSEEECCSS-CCSCCC-SCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCC--CC---CTT
T ss_pred cCCccEEEeCCC-CCCccC-HhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcc--hh---hcC
Confidence 458889998874 343211 011 467888888874 454322 33677777777766 343311 11 127
Q ss_pred CcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCcee
Q 014524 201 LKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (423)
Q Consensus 201 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (423)
|+.|++++|.++.. .. .+++|+.|+++++ .++.. ...+++|+.|+++++. ++.... + .++|+.|
T Consensus 122 L~~L~Ls~N~l~~l--p~--~l~~L~~L~Ls~N-~l~~l-----p~~l~~L~~L~Ls~N~-L~~lp~--l---~~~L~~L 185 (571)
T 3cvr_A 122 LKHLDVDNNQLTML--PE--LPALLEYINADNN-QLTML-----PELPTSLEVLSVRNNQ-LTFLPE--L---PESLEAL 185 (571)
T ss_dssp CCEEECCSSCCSCC--CC--CCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-CSCCCC--C---CTTCCEE
T ss_pred CCEEECCCCcCCCC--CC--cCccccEEeCCCC-ccCcC-----CCcCCCcCEEECCCCC-CCCcch--h---hCCCCEE
Confidence 77777777755431 11 4566777777653 22221 1134566666666542 222111 1 1556666
Q ss_pred ccCCCc
Q 014524 281 DAGHCF 286 (423)
Q Consensus 281 ~l~~~~ 286 (423)
+++++.
T Consensus 186 ~Ls~N~ 191 (571)
T 3cvr_A 186 DVSTNL 191 (571)
T ss_dssp ECCSSC
T ss_pred ECcCCC
Confidence 655554
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=1.2e-08 Score=83.91 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=16.5
Q ss_pred CCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
++|+.|++++|.+.......+..+++|++|++++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence 4555555555544433223344455555555554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.59 E-value=1.7e-08 Score=79.37 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=44.0
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHH--HHHHH
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDA--ISAIA 374 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~ 374 (423)
+..+++|+.|++++|.+...... +...+++|++|+++++. +++.........+++|+.|++++|. ++... ...+.
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~ 136 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEG-LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVI 136 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSC-HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHH
T ss_pred cccCCCCCEEECCCCcccccCcc-hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHH
Confidence 44555666666666654432111 11245666666666654 4332111122356667777766643 22111 11123
Q ss_pred hhCCCccEEEeccCC
Q 014524 375 DSCRGLVCLKIESCN 389 (423)
Q Consensus 375 ~~~~~L~~L~l~~c~ 389 (423)
..+++|+.|+++++.
T Consensus 137 ~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCSEETTEECC
T ss_pred HHCCccceeCCCcCC
Confidence 356777777776655
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.59 E-value=5.8e-09 Score=85.26 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=15.5
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
.+++|+.|++++|.+.......+..+++|++|++++
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 344455555554443332222333444444444444
No 133
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.58 E-value=3.3e-08 Score=92.09 Aligned_cols=189 Identities=14% Similarity=0.063 Sum_probs=91.1
Q ss_pred CCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChhHHHHhhccCCcc
Q 014524 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (423)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 226 (423)
.+|+.|+++++ .++... . ..+++|++|+++++ .++... ..+++|+.|++++|.++.. ..+.. +|+
T Consensus 59 ~~L~~L~Ls~n-~L~~lp--~--~l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~l~~i--p~l~~--~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLP--D--NLPPQITVLEITQN-ALISLP-----ELPASLEYLDACDNRLSTL--PELPA--SLK 123 (571)
T ss_dssp TTCSEEECCSS-CCSCCC--S--CCCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCSCC--CCCCT--TCC
T ss_pred CCccEEEeCCC-CCCccC--H--hHcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCCCCCc--chhhc--CCC
Confidence 47888888774 443311 1 01366777777766 444222 3467777777777755431 11222 777
Q ss_pred EEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEE
Q 014524 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAI 306 (423)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 306 (423)
+|+++++ .++. +.. .+++|+.|+++++. ++.... .+++|+.|+++++. ++. ... +. ++|+.|
T Consensus 124 ~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~--L~~-lp~-l~--~~L~~L 185 (571)
T 3cvr_A 124 HLDVDNN-QLTM--LPE---LPALLEYINADNNQ-LTMLPE-----LPTSLEVLSVRNNQ--LTF-LPE-LP--ESLEAL 185 (571)
T ss_dssp EEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC--CSC-CCC-CC--TTCCEE
T ss_pred EEECCCC-cCCC--CCC---cCccccEEeCCCCc-cCcCCC-----cCCCcCEEECCCCC--CCC-cch-hh--CCCCEE
Confidence 7777764 2322 111 35677777776642 322111 35667777766665 222 111 22 566666
Q ss_pred EccCccCChhhH--HHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHH
Q 014524 307 TMDGARISDSCF--QTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISA 372 (423)
Q Consensus 307 ~l~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 372 (423)
++++|.++.... ..+....+.|+.|+++++. ++. +..-...+++|+.|++++| .++...+..
T Consensus 186 ~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~L~~N-~l~~~~p~~ 249 (571)
T 3cvr_A 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITH--IPENILSLDPTCTIILEDN-PLSSRIRES 249 (571)
T ss_dssp ECCSSCCSSCCCCC--------CCEEEECCSSC-CCC--CCGGGGGSCTTEEEECCSS-SCCHHHHHH
T ss_pred ECcCCCCCchhhHHHhhhcccccceEEecCCCc-cee--cCHHHhcCCCCCEEEeeCC-cCCCcCHHH
Confidence 666665442111 0000011122666665543 432 1111123555666666553 444444333
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.55 E-value=4.7e-09 Score=84.35 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=7.4
Q ss_pred cCCCCcEEeccCccc
Q 014524 197 KCLDLKSLDVSYLKL 211 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~ 211 (423)
.+++|+.|++++|.+
T Consensus 46 ~l~~L~~L~ls~n~l 60 (198)
T 1ds9_A 46 TLKACKHLALSTNNI 60 (198)
T ss_dssp HTTTCSEEECSEEEE
T ss_pred cCCCCCEEECCCCCC
Confidence 445555555555433
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.55 E-value=9.9e-09 Score=82.46 Aligned_cols=124 Identities=14% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVN 353 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 353 (423)
+++|+.|+++++. +.. +..+..+++|+.|++++|.+.. +......+++|+.|+++++. ++.. .. ...+++
T Consensus 47 l~~L~~L~ls~n~--l~~--l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l--~~-~~~l~~ 116 (198)
T 1ds9_A 47 LKACKHLALSTNN--IEK--ISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASL--SG-IEKLVN 116 (198)
T ss_dssp TTTCSEEECSEEE--ESC--CCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEE-CCCH--HH-HHHHHH
T ss_pred CCCCCEEECCCCC--Ccc--ccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCc-CCcC--Cc-cccCCC
Confidence 4445555544443 222 1134445555555555554332 11111233556666666554 4432 12 224556
Q ss_pred CcEEecCCCCCCCHHH-HHHHHhhCCCccEEEeccCCCCCHHH---------HHHHHhcCCCCCEEe
Q 014524 354 LKTIDLTCCHSITDDA-ISAIADSCRGLVCLKIESCNMITEKG---------LYQLGSFCLRLEEID 410 (423)
Q Consensus 354 L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~i~~~~---------~~~l~~~~~~L~~L~ 410 (423)
|+.|++++| .+++.. +..+ ..+++|+.|++++|+ ++... .......+++|+.|+
T Consensus 117 L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 666666653 333322 2222 246666666666654 43221 112233567777666
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.54 E-value=1.8e-08 Score=82.26 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=18.7
Q ss_pred CCCcEEeccCcccChhHH-HHhhccCCccEEEecC
Q 014524 199 LDLKSLDVSYLKLTNDSF-CSIATLAKLESLVMVG 232 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 232 (423)
+.++.|++++|.+..... ..+..+++|+.|++++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~ 66 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN 66 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC
Confidence 356677777775543311 1244566666666665
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.51 E-value=6e-10 Score=98.31 Aligned_cols=224 Identities=14% Similarity=0.066 Sum_probs=133.4
Q ss_pred ccccccccccccccchhhHHHHHhcCCCCcEEeccCcccChh-HHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCC
Q 014524 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTND-SFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (423)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (423)
+++++|+++++ .++...... +..+++|+.|++++|.+... ....+.++++++++.+.+++.+...... ....+++|
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTS-STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT-SBCCCTTC
T ss_pred CCCCEEEccCC-cCCCcCHHH-HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch-hhhhcccc
Confidence 57999999886 555432222 24689999999999965432 2234556778777655544444432211 12347899
Q ss_pred ceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcC-CcccEEEccCccCChhhHHHHHhcCCCccE
Q 014524 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDL-KNLEAITMDGARISDSCFQTISFNCKSLVE 330 (423)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 330 (423)
+.|++.++. +....-... ....++..|++.++.. +.......+..+ ..++.|++++|.+.......+ ...+|++
T Consensus 107 ~~L~l~~n~-l~~~~~~~~-~~~~~l~~l~l~~~~~-i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f--~~~~L~~ 181 (350)
T 4ay9_X 107 QYLLISNTG-IKHLPDVHK-IHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF--NGTQLDE 181 (350)
T ss_dssp CEEEEEEEC-CSSCCCCTT-CCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS--TTEEEEE
T ss_pred ccccccccc-cccCCchhh-cccchhhhhhhccccc-cccccccchhhcchhhhhhccccccccCCChhhc--cccchhH
Confidence 999998742 322111111 1234566677655433 332222233444 368899999997764222211 3468999
Q ss_pred EeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEe
Q 014524 331 IGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEID 410 (423)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~ 410 (423)
+.+.++..++...- .....+++|+.|+++++ .++.-. ...+.+|++|.+.++.+++... . ...+++|+.++
T Consensus 182 l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N-~l~~lp----~~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 182 LNLSDNNNLEELPN-DVFHGASGPVILDISRT-RIHSLP----SYGLENLKKLRARSTYNLKKLP--T-LEKLVALMEAS 252 (350)
T ss_dssp EECTTCTTCCCCCT-TTTTTEECCSEEECTTS-CCCCCC----SSSCTTCCEEECTTCTTCCCCC--C-TTTCCSCCEEE
T ss_pred HhhccCCcccCCCH-HHhccCcccchhhcCCC-CcCccC----hhhhccchHhhhccCCCcCcCC--C-chhCcChhhCc
Confidence 99987654544221 12347789999999985 444211 1236788999888877665322 2 23688999999
Q ss_pred ccC
Q 014524 411 LTD 413 (423)
Q Consensus 411 l~~ 413 (423)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 865
No 138
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.42 E-value=5e-06 Score=65.16 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCcccEEEccCccCChhhHHHHH---hcCCCccEEeeccCCCCChHHHHHHHhcC---CCCcEEecCCCC--CCCHHHHH
Q 014524 300 LKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKCLGVTNTGITQLVSGC---VNLKTIDLTCCH--SITDDAIS 371 (423)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~--~l~~~~~~ 371 (423)
-..|+.|+|++|.+++.+...++ ..-+.|++|+|+.+. +++.+...++..+ +.|+.|+++++. .+.+.+..
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 44555556655555555543333 233456666666544 6666655554433 456666666431 45555444
Q ss_pred HHHh---hCCCccEEEeccC
Q 014524 372 AIAD---SCRGLVCLKIESC 388 (423)
Q Consensus 372 ~~~~---~~~~L~~L~l~~c 388 (423)
.+++ .-++|++|++..+
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHhCCCcCeEeccCC
Confidence 3332 2456666666554
No 139
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.41 E-value=8.6e-06 Score=63.82 Aligned_cols=120 Identities=12% Similarity=0.217 Sum_probs=92.9
Q ss_pred HHHHHhhcCCcccEEEccCc-cCChhhHHHHHh---cCCCccEEeeccCCCCChHHHHHHH---hcCCCCcEEecCCCCC
Q 014524 292 TLLHHMRDLKNLEAITMDGA-RISDSCFQTISF---NCKSLVEIGLSKCLGVTNTGITQLV---SGCVNLKTIDLTCCHS 364 (423)
Q Consensus 292 ~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 364 (423)
.....+..-++|+.|+++++ .+.+++...++. .-..|++|+|+++. +.+.+...++ +.-+.|+.|+|++ +.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-NF 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-SB
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-Cc
Confidence 34444556778999999885 788888776663 34689999999987 9998865444 4568999999998 68
Q ss_pred CCHHHHHHHHhhC---CCccEEEeccCC--CCCHHHHHHHHh---cCCCCCEEeccC
Q 014524 365 ITDDAISAIADSC---RGLVCLKIESCN--MITEKGLYQLGS---FCLRLEEIDLTD 413 (423)
Q Consensus 365 l~~~~~~~~~~~~---~~L~~L~l~~c~--~i~~~~~~~l~~---~~~~L~~L~l~~ 413 (423)
+++.+...+++.+ +.|+.|+++++. .+.+.+...+++ .-+.|..|+++.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 9999999998875 579999998763 478776555553 457899999976
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.23 E-value=2e-08 Score=89.69 Aligned_cols=240 Identities=17% Similarity=0.230 Sum_probs=113.0
Q ss_pred CCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCC
Q 014524 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (423)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 200 (423)
+..++++.+.. .+...+...+..+ +|+.+.+.. +++..+-..+.. | +|+.+.+.. .+...+-.. +..|++
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~-~-~L~~i~lp~--~l~~I~~~a-F~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFN-S-TVQEIVFPS--TLEQLKEDI-FYYCYN 181 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTT-C-CCCEEECCT--TCCEECSST-TTTCTT
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCC--CccEECHHhcCC-C-CceEEEeCC--CccEehHHH-hhCccc
Confidence 45666666654 2232222333343 577776654 232222122221 2 466666653 222221111 236777
Q ss_pred CcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCcee
Q 014524 201 LKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (423)
Q Consensus 201 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (423)
|+.+++..+.+..-.-..+. +.+|+.+.+.. .+....-..+ .+|++|+.+.+.. ++...+-.++.. .+|+.+
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF-~~~~~L~~l~l~~--~l~~I~~~aF~~--~~L~~i 253 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAF-LKTSQLKTIEIPE--NVSTIGQEAFRE--SGITTV 253 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTT-TTCTTCCCEECCT--TCCEECTTTTTT--CCCSEE
T ss_pred CCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHh-hCCCCCCEEecCC--CccCcccccccc--CCccEE
Confidence 77777776533322222222 46677777753 2222211112 3367777777754 233222222221 467777
Q ss_pred ccCCCcccchHHHHHHhhcCCcccEEEccCccCCh-----hhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCc
Q 014524 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD-----SCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLK 355 (423)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 355 (423)
.+... +......++..|++|+.+.+.++.+.. -+-..+ ..|++|+.+.+... ++..+-..+ ..|++|+
T Consensus 254 ~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~~--i~~I~~~aF-~~c~~L~ 326 (401)
T 4fdw_A 254 KLPNG---VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPES--IRILGQGLL-GGNRKVT 326 (401)
T ss_dssp EEETT---CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCTT--CCEECTTTT-TTCCSCC
T ss_pred EeCCC---ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-hCCccCCeEEeCCc--eEEEhhhhh-cCCCCcc
Confidence 66432 333333456667777777776653320 111111 26677777777531 322221122 3567777
Q ss_pred EEecCCCCCCCHHHHHHHHhhCCCccEEEeccCC
Q 014524 356 TIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (423)
Q Consensus 356 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 389 (423)
.+.+.. .++.-+...+. .| +|+.+.+.++.
T Consensus 327 ~l~lp~--~l~~I~~~aF~-~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 327 QLTIPA--NVTQINFSAFN-NT-GIKEVKVEGTT 356 (401)
T ss_dssp EEEECT--TCCEECTTSSS-SS-CCCEEEECCSS
T ss_pred EEEECc--cccEEcHHhCC-CC-CCCEEEEcCCC
Confidence 777753 33322222222 45 77777777653
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.08 E-value=9.8e-07 Score=70.26 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=6.2
Q ss_pred CCCCceEecCCC
Q 014524 248 CPLLKTIFVSRC 259 (423)
Q Consensus 248 ~~~L~~L~l~~~ 259 (423)
+++|+.|++.++
T Consensus 125 l~~L~~L~L~~N 136 (193)
T 2wfh_A 125 LSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSS
T ss_pred CccccEEEeCCC
Confidence 455555555543
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.07 E-value=1.7e-06 Score=68.84 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=13.2
Q ss_pred CCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
+|+.|++++|.+.... ..+..+++|+.|++++
T Consensus 32 ~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~ 63 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVP-KELSNYKHLTLIDLSN 63 (193)
T ss_dssp TCCEEECCSSCCCSCC-GGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhH-HHhhcccCCCEEECCC
Confidence 4444555444333211 2333344444444443
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.05 E-value=1.5e-06 Score=68.23 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=15.4
Q ss_pred CCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
++|+.|+++++.+.......+..+++|++|++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ 61 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC
Confidence 4555555555544322222233445555555544
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.01 E-value=5.3e-07 Score=71.79 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=35.6
Q ss_pred CCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCC
Q 014524 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVN 353 (423)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 353 (423)
+++|+.|+++++. ++......+..+++|+.|++++|.+.......+. .+++|++|+++++. ++.... .....+++
T Consensus 53 l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~ 127 (192)
T 1w8a_A 53 LPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQ-ISCVMP-GSFEHLNS 127 (192)
T ss_dssp CTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSC-CCEECT-TSSTTCTT
T ss_pred CCCCCEEECCCCC--CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCc-CCeeCH-HHhhcCCC
Confidence 3444444444443 2222223344455555555555544332221121 34555555555543 332111 11124456
Q ss_pred CcEEecCCC
Q 014524 354 LKTIDLTCC 362 (423)
Q Consensus 354 L~~L~l~~~ 362 (423)
|+.|+++++
T Consensus 128 L~~L~L~~N 136 (192)
T 1w8a_A 128 LTSLNLASN 136 (192)
T ss_dssp CCEEECTTC
T ss_pred CCEEEeCCC
Confidence 666666654
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.00 E-value=1.2e-06 Score=68.85 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=14.6
Q ss_pred CCccEEEccCcCCCChHHHHHhhcCCCCcEEecCC
Q 014524 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (423)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (423)
++|++|++++ ..+.......+..+++|++|++++
T Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 61 (177)
T 2o6r_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQ 61 (177)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCcEEEeCC-CcccEeCHHHhcCcccccEEECCC
Confidence 3455555554 222222222233445555555554
No 146
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.98 E-value=1.5e-06 Score=71.55 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhcc
Q 014524 5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRT 47 (423)
Q Consensus 5 ~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~~~~ 47 (423)
..++.||+||+.+||+||+ ++|+.++++|||+|+.++.....
T Consensus 3 ~~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~L 44 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPIL 44 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHHH
T ss_pred chhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccchH
Confidence 4689999999999999999 99999999999999998755433
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.97 E-value=1e-06 Score=70.13 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=15.6
Q ss_pred CccEEEccCcCCCChHHHH-HhhcCCCCcEEecCC
Q 014524 123 LLESVDLSYCCGFGDREAA-ALSFASGLKEVKLDK 156 (423)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~ 156 (423)
+|++|++++. .+...... .+..+++|++|++++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKR 63 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCS
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCC
Confidence 5666666652 23222111 134455555555555
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.96 E-value=4.5e-08 Score=87.80 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=5.5
Q ss_pred cCCCCcEEecC
Q 014524 350 GCVNLKTIDLT 360 (423)
Q Consensus 350 ~~~~L~~L~l~ 360 (423)
.|.+|+.+.+.
T Consensus 341 ~c~~L~~i~lp 351 (394)
T 4fs7_A 341 GCTSLSNINFP 351 (394)
T ss_dssp TCTTCCEECCC
T ss_pred CCCCCCEEEEC
Confidence 44555555554
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.86 E-value=5.3e-07 Score=87.18 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=65.8
Q ss_pred CCCcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCc--hhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCC
Q 014524 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDD--TGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (423)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (423)
++++.|++.++.+... ...+.....|..+.+........ .........+++|+.|+++++. +.... .-...+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~--~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNIS--ANIFKYDF 248 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC-CSCCC--GGGGGCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCC--hhhcCCCC
Confidence 5677777776644332 11222233344444432110000 0111223346788888887753 22211 11124778
Q ss_pred CceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcE
Q 014524 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (423)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (423)
|+.|+++++. ++ .....+..+++|+.|+|++|.++.. ...+ ..+++|++|+|+++. ++. +..-...+++|+.
T Consensus 249 L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~-~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 249 LTRLYLNGNS--LT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAEL-GSCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQF 320 (727)
T ss_dssp CSCCBCTTSC--CS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSG-GGGTTCSEEECCSSC-CCC--CCSSTTSCTTCCC
T ss_pred CCEEEeeCCc--Cc-ccChhhhCCCCCCEEeCcCCcCCcc-Chhh-cCCCCCCEEECCCCC-CCc--cChhhhcCCCccE
Confidence 8888888776 34 3344567777888888888766521 1122 356777777777764 432 1111346677777
Q ss_pred EecCCCCCCCHHHH
Q 014524 357 IDLTCCHSITDDAI 370 (423)
Q Consensus 357 L~l~~~~~l~~~~~ 370 (423)
|+|++| .++....
T Consensus 321 L~L~~N-~l~~~~p 333 (727)
T 4b8c_D 321 LGVEGN-PLEKQFL 333 (727)
T ss_dssp EECTTS-CCCSHHH
T ss_pred EeCCCC-ccCCCCh
Confidence 777774 4444333
No 150
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.84 E-value=4.3e-06 Score=69.75 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=36.5
Q ss_pred CccccchHHHHHHHHHhcCCcchhh-HHHHHHHHHHHHHhhh
Q 014524 5 SALDVLTEDLLVRVREKIGDELDSK-TWRLVCKEFSRVDSVT 45 (423)
Q Consensus 5 ~~~~~LP~eil~~If~~L~~~~d~~-~~~~vcr~w~~~~~~~ 45 (423)
..+..||+|++.+||.+|| .+++. ++++|||+|+.++...
T Consensus 49 ~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred cChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 4788999999999999999 99999 9999999999986543
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.82 E-value=5.7e-06 Score=80.02 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=79.2
Q ss_pred HhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHh
Q 014524 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (423)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (423)
.+..+++|+.|+++++. +.... ..+. .+++|++|+|+++ .++. +...+..+++|+.|+++++. ++ .....+
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l~-~~~~-~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~--l~-~lp~~~ 289 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNIS-ANIF-KYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSHNR--LT-SLPAEL 289 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCCC-GGGG-GCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTTSC--CS-SCCSSG
T ss_pred hhccCCCCcEEECCCCC-CCCCC-hhhc-CCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcCCc--CC-ccChhh
Confidence 45568999999999854 32211 1122 4899999999985 3442 22334568999999999987 44 445567
Q ss_pred hcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHH
Q 014524 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTG 343 (423)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 343 (423)
..+++|+.|+|++|.++.... .+ ..+++|+.|+|+++. ++...
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~-~~-~~l~~L~~L~L~~N~-l~~~~ 332 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPW-EF-GNLCNLQFLGVEGNP-LEKQF 332 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCS-ST-TSCTTCCCEECTTSC-CCSHH
T ss_pred cCCCCCCEEECCCCCCCccCh-hh-hcCCCccEEeCCCCc-cCCCC
Confidence 889999999999998763211 23 378999999999987 76543
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.73 E-value=2.8e-06 Score=75.90 Aligned_cols=237 Identities=12% Similarity=0.210 Sum_probs=125.7
Q ss_pred CccEEEeccCCCCchhHHHHHHHhCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCcccc
Q 014524 97 SLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLE 176 (423)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 176 (423)
+|+.+.+... +..-.-.++. . .+|+++.+.. .+...+...+..+++|+.+++.. ..++...-..+. +.+|+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~-~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~--~~~L~ 206 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFF-N-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV--YAGIE 206 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTT-T-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT--TCCCS
T ss_pred CccEEEeCCC--ccEECHHhcC-C-CCceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEe--ecccC
Confidence 5777777542 2211111111 2 3688888765 34444444566788888888875 233322211121 56788
Q ss_pred ccccccccccchhhHHHHHhcCCCCcEEeccCc--ccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceE
Q 014524 177 RLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL--KLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTI 254 (423)
Q Consensus 177 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 254 (423)
.+.+... +...+-..+ ..|++|+.+.+..+ .+... .+.. .+|+.+.+.. .+....-..+ .+|++|+.+
T Consensus 207 ~l~lp~~--l~~I~~~aF-~~~~~L~~l~l~~~l~~I~~~---aF~~-~~L~~i~lp~--~i~~I~~~aF-~~c~~L~~l 276 (401)
T 4fdw_A 207 EVLLPVT--LKEIGSQAF-LKTSQLKTIEIPENVSTIGQE---AFRE-SGITTVKLPN--GVTNIASRAF-YYCPELAEV 276 (401)
T ss_dssp EEECCTT--CCEECTTTT-TTCTTCCCEECCTTCCEECTT---TTTT-CCCSEEEEET--TCCEECTTTT-TTCTTCCEE
T ss_pred EEEeCCc--hheehhhHh-hCCCCCCEEecCCCccCcccc---cccc-CCccEEEeCC--CccEEChhHh-hCCCCCCEE
Confidence 8777532 332222222 36788888888765 23322 2333 5788888853 3322211222 347888888
Q ss_pred ecCCCccc----CcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCccCChhhHHHHHhcCCCccE
Q 014524 255 FVSRCKFV----SSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVE 330 (423)
Q Consensus 255 ~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 330 (423)
.+.+.... ...+ ...+..|++|+.+.+... +......++..|.+|+.+.+..+ +..-+-.++. .| +|++
T Consensus 277 ~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~-~~-~L~~ 349 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIH-PYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN-NT-GIKE 349 (401)
T ss_dssp EEESSCCCCCTTCEEC-TTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS-SS-CCCE
T ss_pred EeCCccccCCcccEEC-HHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC-CC-CCCE
Confidence 88653210 0011 123345788888888743 33334456777888999888665 2221222222 66 8999
Q ss_pred EeeccCCCCChHHHHHHHhcC-CCCcEEecCC
Q 014524 331 IGLSKCLGVTNTGITQLVSGC-VNLKTIDLTC 361 (423)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~ 361 (423)
+.+.+.. .....-. ....+ .+++.|.+..
T Consensus 350 l~l~~n~-~~~l~~~-~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 350 VKVEGTT-PPQVFEK-VWYGFPDDITVIRVPA 379 (401)
T ss_dssp EEECCSS-CCBCCCS-SCCCSCTTCCEEEECG
T ss_pred EEEcCCC-Ccccccc-cccCCCCCccEEEeCH
Confidence 9887653 2221101 11234 3677887775
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=2.9e-06 Score=76.02 Aligned_cols=123 Identities=18% Similarity=0.253 Sum_probs=62.8
Q ss_pred hCCCCceeccCCCcccchHHHHHHhhcCCcccEEEccCc--cCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhc
Q 014524 273 GHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGA--RISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSG 350 (423)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (423)
.+..|+.+.+.... ......++..+++|+.+.+... .+.+..+ ..|.+|+++.+... ++.-+-.. ...
T Consensus 263 ~c~~L~~i~lp~~~---~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~--v~~I~~~a-F~~ 332 (394)
T 4gt6_A 263 SCAYLASVKMPDSV---VSIGTGAFMNCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEG--ITQILDDA-FAG 332 (394)
T ss_dssp TCSSCCEEECCTTC---CEECTTTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTT--CCEECTTT-TTT
T ss_pred ecccccEEeccccc---ceecCcccccccccccccCCCcccccCceee----cCCCCcCEEEeCCc--ccEehHhH-hhC
Confidence 46667777665432 2222334556777887777543 2333322 26778888888542 32211112 246
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 351 CVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 351 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
|.+|+.+.|.. .++.-+-.++ ..|.+|+.+++.+.. .....+ ..+..|+.+.+..
T Consensus 333 C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~~----~~~~~~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGSR----SQWNAI-STDSGLQNLPVAP 387 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSCH----HHHHTC-BCCCCC-------
T ss_pred CCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCce----eehhhh-hccCCCCEEEeCC
Confidence 78888888863 3332222222 258888888887642 112222 3577788777764
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.56 E-value=6.9e-07 Score=80.05 Aligned_cols=104 Identities=18% Similarity=0.390 Sum_probs=60.0
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhh
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADS 376 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 376 (423)
+..+..++.+......+.+.. ...+.+|+.+.+... ++.-+-.. ...|++|+.+++.. .++.-+-.++ ..
T Consensus 272 F~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~~--i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF-~~ 341 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLDS--VKFIGEEA-FESCTSLVSIDLPY--LVEEIGKRSF-RG 341 (394)
T ss_dssp TTTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECTT--CCEECTTT-TTTCTTCCEECCCT--TCCEECTTTT-TT
T ss_pred cccccccceeccCceeecccc----ccccccccccccccc--cceechhh-hcCCCCCCEEEeCC--cccEEhHHhc-cC
Confidence 344555666555544333322 236788888888542 32211112 24788999999874 3433222223 25
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 377 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
|.+|+.+.+... ++..+-.++. +|++|+.+++..
T Consensus 342 c~~L~~i~lp~~--l~~I~~~aF~-~C~~L~~i~lp~ 375 (394)
T 4fs7_A 342 CTSLSNINFPLS--LRKIGANAFQ-GCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECCCTT--CCEECTTTBT-TCTTCCEEEEEG
T ss_pred CCCCCEEEECcc--ccEehHHHhh-CCCCCCEEEECC
Confidence 889999998653 4433323333 789999998865
No 155
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.44 E-value=3.9e-05 Score=70.29 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=37.2
Q ss_pred CCccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHhh
Q 014524 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (423)
Q Consensus 4 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~~ 44 (423)
.|.+..||+|++.+||+||+ .+++.++++|||+|+++...
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 57899999999999999999 99999999999999998754
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.38 E-value=6.5e-06 Score=73.69 Aligned_cols=107 Identities=26% Similarity=0.442 Sum_probs=68.1
Q ss_pred HHHhhcCCcccEEEccCcc--CChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCCCCCCHHHHH
Q 014524 294 LHHMRDLKNLEAITMDGAR--ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAIS 371 (423)
Q Consensus 294 ~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 371 (423)
..++..+..|+.+.+.... +....+ ..|+.|+.+.+... ++..+-. ....|.+|+.+.|.. .++.-+-.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~--i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSR--ITELPES-VFAGCISLKSIDIPE--GITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTT--CCEECTT-TTTTCTTCCEEECCT--TCCEECTT
T ss_pred cceeeecccccEEecccccceecCccc----ccccccccccCCCc--ccccCce-eecCCCCcCEEEeCC--cccEehHh
Confidence 3456778899999987652 333222 37889999998642 3222211 234789999999974 34322222
Q ss_pred HHHhhCCCccEEEeccCCCCCHHHHHHHHhcCCCCCEEeccC
Q 014524 372 AIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (423)
Q Consensus 372 ~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 413 (423)
++ ..|.+|+.+.+... ++..+-.++. +|.+|+.+++.+
T Consensus 329 aF-~~C~~L~~i~ip~s--v~~I~~~aF~-~C~~L~~i~~~~ 366 (394)
T 4gt6_A 329 AF-AGCEQLERIAIPSS--VTKIPESAFS-NCTALNNIEYSG 366 (394)
T ss_dssp TT-TTCTTCCEEEECTT--CCBCCGGGGT-TCTTCCEEEESS
T ss_pred Hh-hCCCCCCEEEECcc--cCEEhHhHhh-CCCCCCEEEECC
Confidence 23 36899999999652 4433333343 899999999876
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.36 E-value=3.7e-05 Score=59.60 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=24.7
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCC
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (423)
+..+++|+.|++++|.+.......+ ..+++|++|+++++. ++.... .....+++|+.|+++++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVF-DKLTQLTQLSLNDNQ-LKSIPR-GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCCCCcCccChhhc-cCCCCCCEEECCCCc-cCEeCH-HHhcCCCCCCEEEeCCC
Confidence 3344445555555444332111111 134455555554433 321110 11123455555555553
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.35 E-value=3.9e-05 Score=59.74 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=27.4
Q ss_pred hhcCCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCCC
Q 014524 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (423)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (423)
+..+++|+.|++++|.+.......+ ..+++|+.|+++++. ++... ......+++|+.|+++++
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAIPTGVF-DKLTQLTQLDLNDNH-LKSIP-RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS
T ss_pred hcCCcCCCEEECCCCCCCccChhHh-CCcchhhEEECCCCc-cceeC-HHHhccccCCCEEEeCCC
Confidence 3445555555555554433111111 244555555555543 33211 011234556666666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=0.00058 Score=56.63 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=6.2
Q ss_pred HHhcCCCCcEEe
Q 014524 347 LVSGCVNLKTID 358 (423)
Q Consensus 347 ~~~~~~~L~~L~ 358 (423)
+...+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 334555555554
No 160
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.33 E-value=7e-05 Score=67.99 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCCccccchHH----HHHHHHHhcCCcchhhHHHHHHHHHHHHHhhh
Q 014524 3 GSSALDVLTED----LLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (423)
Q Consensus 3 ~~~~~~~LP~e----il~~If~~L~~~~d~~~~~~vcr~w~~~~~~~ 45 (423)
-.|++..||+| ++.+||+||+ .+++.++++|||+|+.+....
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHT
T ss_pred hcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 35789999999 9999999999 999999999999999987643
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.28 E-value=0.00051 Score=56.98 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=37.7
Q ss_pred cCCcccEEEccCccCChh-hHHHHHhcCCCccEEeeccCCCCChH-HHHHHHhcCCCCcEEecCCCCCCCH------HHH
Q 014524 299 DLKNLEAITMDGARISDS-CFQTISFNCKSLVEIGLSKCLGVTNT-GITQLVSGCVNLKTIDLTCCHSITD------DAI 370 (423)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~------~~~ 370 (423)
++++|+.|+|++|.+..- ++..+...+++|+.|+|+++. +++. .+..+ ..+ +|+.|++.+|+ ++. ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l-~~l-~L~~L~L~~Np-l~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKI-KGL-KLEELWLDGNS-LCDTFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGG-TTS-CCSEEECTTST-TGGGCSSHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhc-ccC-CcceEEccCCc-CccccCcchhHH
Confidence 455555555555544331 122222345566666665544 4332 11111 122 66666666643 321 222
Q ss_pred HHHHhhCCCccEEEe
Q 014524 371 SAIADSCRGLVCLKI 385 (423)
Q Consensus 371 ~~~~~~~~~L~~L~l 385 (423)
..+...+|+|+.|+=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 334445677766653
No 162
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.15 E-value=0.00013 Score=66.31 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=36.9
Q ss_pred CCCccccchHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHh
Q 014524 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDS 43 (423)
Q Consensus 3 ~~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~w~~~~~ 43 (423)
..+.+..||+|++.+||+||+ .+|+.++++|||+|+.+..
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred cCChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence 357899999999999999999 9999999999999999864
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.14 E-value=8.6e-05 Score=57.54 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=17.0
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
.+++|+.|++++|.+.......+..+++|+.|++.+
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 344555555555544332222344455555555554
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.11 E-value=9.8e-05 Score=57.44 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=17.3
Q ss_pred cCCCCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
.+++|+.|++++|.+.......+..+++|++|++.+
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 345555555555544332222244455555555554
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.47 E-value=0.00086 Score=58.70 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=32.6
Q ss_pred hCCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccc
Q 014524 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWC 183 (423)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (423)
.+++|++|++++...+.......+..+++|+.|+|+++ .++..... ....+++|++|+|+++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC
Confidence 45667777776434444444344556677777777663 44332111 1223555666666554
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.26 E-value=0.0014 Score=57.35 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=35.5
Q ss_pred hcCCCCcEEeccC-cccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCC
Q 014524 196 KKCLDLKSLDVSY-LKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRC 259 (423)
Q Consensus 196 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 259 (423)
..+++|+.|++++ |.+.......+..+++|+.|+++++ .+....-..+ ..+++|+.|+|+++
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFN 90 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSS
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHh-cCCcCCCEEeCCCC
Confidence 3556778888875 6665444445566777777777763 3333211112 23666666666653
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.57 E-value=0.024 Score=50.09 Aligned_cols=150 Identities=14% Similarity=0.215 Sum_probs=76.6
Q ss_pred CCCccEEEccCcCCCChHHHHHhhcCCCCcEEecCCCCCCChHHHHHHHHhCccccccccccccccchhhHHHHHhcCCC
Q 014524 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (423)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 200 (423)
+..+..+.+... ........+..+.+|+.+.+... +....-. ....|.+|+.+.+... +...+-. ....|.+
T Consensus 193 ~~~~~~~~~~~~--~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~-~f~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~ 264 (379)
T 4h09_A 193 AKTGTEFTIPST--VKTVTAYGFSYGKNLKKITITSG--VTTLGDG-AFYGMKALDEIAIPKN--VTSIGSF-LLQNCTA 264 (379)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCSSCSEEECCTT--CCEECTT-TTTTCSSCCEEEECTT--CCEECTT-TTTTCTT
T ss_pred cccccccccccc--eeEEeecccccccccceeeeccc--eeEEccc-cccCCccceEEEcCCC--ccEeCcc-ccceeeh
Confidence 445555555431 12222223445677777777542 2221111 1233677777777542 2222211 2236778
Q ss_pred CcEEeccCcccChhHHHHhhccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCcee
Q 014524 201 LKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (423)
Q Consensus 201 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (423)
|+.+.+... +.......+..+++|+.+.+.+. .+...+-. ...+|.+|+.+.+.. .+...+-.+ +..|.+|+.+
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i 338 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPR-VFMDCVKLSSVTLPT--ALKTIQVYA-FKNCKALSTI 338 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTT-TTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCCC
T ss_pred hcccccccc-ceecccccccccccccccccccc-ccceehhh-hhcCCCCCCEEEcCc--cccEEHHHH-hhCCCCCCEE
Confidence 888887654 22222234566788888888642 22221111 123478888888864 233332222 2357888888
Q ss_pred ccCC
Q 014524 281 DAGH 284 (423)
Q Consensus 281 ~l~~ 284 (423)
.+..
T Consensus 339 ~ip~ 342 (379)
T 4h09_A 339 SYPK 342 (379)
T ss_dssp CCCT
T ss_pred EECC
Confidence 8754
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.50 E-value=0.11 Score=45.73 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=69.2
Q ss_pred hccCCccEEEecCCCCCCchhHHHHHhcCCCCceEecCCCcccCcchHHHHHHhCCCCceeccCCCcccchHHHHHHhhc
Q 014524 220 ATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD 299 (423)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (423)
..+.+|+.+.+.. .+.......+ ..+..|+.+.+.. .+...+-. ....+.+|+.+.+... +......++..
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~~~f-~~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l~~i~l~~~---i~~i~~~aF~~ 284 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGDGAF-YGMKALDEIAIPK--NVTSIGSF-LLQNCTALKTLNFYAK---VKTVPYLLCSG 284 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECTTTT-TTCSSCCEEEECT--TCCEECTT-TTTTCTTCCEEEECCC---CSEECTTTTTT
T ss_pred ccccccceeeecc--ceeEEccccc-cCCccceEEEcCC--CccEeCcc-ccceeehhcccccccc---ceecccccccc
Confidence 3456677776653 2222111111 2367788777754 23222211 2234667777776543 23333345667
Q ss_pred CCcccEEEccCccCChhhHHHHHhcCCCccEEeeccCCCCChHHHHHHHhcCCCCcEEecCC
Q 014524 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (423)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (423)
+.+|+.+.+.++.+..-+-.++. .|.+|+.+.+... ++.-+-..+ ..|++|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~-~c~~L~~i~lp~~--l~~I~~~aF-~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFM-DCVKLSSVTLPTA--LKTIQVYAF-KNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTT-TCTTCCEEECCTT--CCEECTTTT-TTCTTCCCCCCCT
T ss_pred ccccccccccccccceehhhhhc-CCCCCCEEEcCcc--ccEEHHHHh-hCCCCCCEEEECC
Confidence 88888888876643322222222 7788888888532 322221222 4788888888863
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=70.98 E-value=2.3 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=16.9
Q ss_pred CCcEEeccCcccChhHHHHhhccCCccEEEecC
Q 014524 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (423)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (423)
+|+.|+|++|.+.......+..+++|+.|+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 566666666654433223334445555555554
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=61.52 E-value=3.7 Score=29.46 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.9
Q ss_pred cCCcccEEEccCc
Q 014524 299 DLKNLEAITMDGA 311 (423)
Q Consensus 299 ~~~~L~~L~l~~~ 311 (423)
.+++|+.|.|.+|
T Consensus 53 ~l~~L~~L~L~~N 65 (130)
T 3rfe_A 53 ALPALRTAHLGAN 65 (130)
T ss_dssp GCTTCCEEECCSS
T ss_pred hccccCEEEecCC
Confidence 3444444444444
Done!