Query 014525
Match_columns 423
No_of_seqs 451 out of 3421
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 4.3E-77 9.3E-82 555.9 41.3 363 33-416 35-397 (406)
2 KOG0652 26S proteasome regulat 100.0 1.3E-73 2.8E-78 510.4 32.3 423 1-423 1-424 (424)
3 KOG0727 26S proteasome regulat 100.0 4.1E-64 8.8E-69 447.4 30.2 387 16-423 22-408 (408)
4 KOG0726 26S proteasome regulat 100.0 3.9E-63 8.5E-68 448.9 21.5 360 37-417 73-432 (440)
5 KOG0728 26S proteasome regulat 100.0 1.4E-60 3E-65 424.4 30.5 374 22-416 20-393 (404)
6 PTZ00454 26S protease regulato 100.0 4.1E-57 8.9E-62 447.3 41.7 383 20-423 16-398 (398)
7 KOG0729 26S proteasome regulat 100.0 8.9E-56 1.9E-60 396.8 26.4 364 33-413 45-420 (435)
8 PTZ00361 26 proteosome regulat 100.0 9.3E-54 2E-58 425.7 39.7 370 27-417 59-430 (438)
9 PRK03992 proteasome-activating 100.0 1.9E-52 4.2E-57 415.9 41.9 376 22-418 4-379 (389)
10 TIGR01242 26Sp45 26S proteasom 100.0 8.1E-50 1.8E-54 395.5 40.7 360 31-411 4-363 (364)
11 KOG0730 AAA+-type ATPase [Post 100.0 2.3E-51 4.9E-56 409.1 23.7 258 162-422 426-686 (693)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 2.7E-49 5.9E-54 389.0 24.8 259 154-415 495-773 (802)
13 KOG0651 26S proteasome regulat 100.0 3.9E-49 8.6E-54 361.0 17.5 346 49-416 33-378 (388)
14 KOG0734 AAA+-type ATPase conta 100.0 8E-47 1.7E-51 366.4 21.3 244 166-413 300-543 (752)
15 KOG0736 Peroxisome assembly fa 100.0 1.7E-46 3.7E-51 377.6 23.3 263 158-422 660-944 (953)
16 TIGR03689 pup_AAA proteasome A 100.0 8.3E-43 1.8E-47 351.5 36.6 379 29-413 4-480 (512)
17 KOG0738 AAA+-type ATPase [Post 100.0 5.2E-44 1.1E-48 336.0 21.0 251 161-416 203-474 (491)
18 KOG0733 Nuclear AAA ATPase (VC 100.0 6.4E-44 1.4E-48 351.1 20.7 224 166-394 186-414 (802)
19 KOG0731 AAA+-type ATPase conta 100.0 6.6E-43 1.4E-47 358.6 25.0 249 164-413 305-555 (774)
20 COG1223 Predicted ATPase (AAA+ 100.0 1.6E-41 3.5E-46 303.9 20.7 242 164-413 115-357 (368)
21 COG0465 HflB ATP-dependent Zn 100.0 2.4E-41 5.3E-46 341.8 22.2 249 164-413 144-392 (596)
22 KOG0739 AAA+-type ATPase [Post 100.0 2E-41 4.3E-46 308.5 14.2 233 156-394 119-353 (439)
23 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-39 6.6E-44 346.1 26.4 252 163-416 446-715 (733)
24 KOG0735 AAA+-type ATPase [Post 100.0 3E-39 6.4E-44 322.7 23.8 232 160-394 657-888 (952)
25 COG0464 SpoVK ATPases of the A 100.0 2.7E-39 5.8E-44 333.0 24.0 249 163-414 235-486 (494)
26 TIGR01241 FtsH_fam ATP-depende 100.0 1E-38 2.2E-43 328.0 26.9 250 163-413 48-297 (495)
27 KOG0737 AAA+-type ATPase [Post 100.0 7.6E-39 1.7E-43 301.2 21.7 243 167-414 89-362 (386)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 9.8E-38 2.1E-42 315.3 25.1 242 165-414 223-466 (489)
29 CHL00176 ftsH cell division pr 100.0 1.4E-37 3.1E-42 323.3 25.5 248 165-413 178-425 (638)
30 PRK10733 hflB ATP-dependent me 100.0 5.6E-35 1.2E-39 307.1 26.9 247 166-413 148-394 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.3E-35 1.6E-39 317.9 22.9 213 193-414 1619-1880(2281)
32 KOG0730 AAA+-type ATPase [Post 100.0 3.8E-34 8.2E-39 286.1 21.4 242 165-417 180-422 (693)
33 KOG0732 AAA+-type ATPase conta 100.0 3.6E-34 7.9E-39 301.3 17.6 250 165-417 260-531 (1080)
34 TIGR01243 CDC48 AAA family ATP 100.0 1E-32 2.2E-37 295.8 25.1 249 164-415 172-439 (733)
35 KOG0741 AAA+-type ATPase [Post 100.0 1.2E-33 2.7E-38 274.6 14.3 250 165-415 214-494 (744)
36 KOG0740 AAA+-type ATPase [Post 100.0 7.7E-33 1.7E-37 269.7 17.7 250 161-416 144-409 (428)
37 PLN00020 ribulose bisphosphate 100.0 5.5E-31 1.2E-35 250.7 23.1 244 165-414 110-394 (413)
38 COG0542 clpA ATP-binding subun 99.9 6.6E-25 1.4E-29 227.9 12.5 228 136-391 462-754 (786)
39 CHL00181 cbbX CbbX; Provisiona 99.9 1.5E-22 3.3E-27 193.2 21.3 214 168-394 21-257 (287)
40 TIGR02880 cbbX_cfxQ probable R 99.9 7.5E-23 1.6E-27 195.4 19.0 212 170-394 22-256 (284)
41 KOG0743 AAA+-type ATPase [Post 99.9 2.3E-22 5E-27 195.0 17.6 207 166-382 197-411 (457)
42 TIGR02881 spore_V_K stage V sp 99.9 2.2E-21 4.7E-26 183.7 21.5 212 169-394 5-241 (261)
43 KOG0744 AAA+-type ATPase [Post 99.9 5.5E-22 1.2E-26 183.6 15.2 240 168-415 140-418 (423)
44 KOG0742 AAA+-type ATPase [Post 99.9 6.5E-21 1.4E-25 181.2 20.3 233 165-410 350-611 (630)
45 KOG0735 AAA+-type ATPase [Post 99.9 4.5E-21 9.7E-26 193.0 20.0 240 170-421 408-658 (952)
46 PF00004 AAA: ATPase family as 99.9 2.4E-21 5.1E-26 163.6 14.5 130 207-340 1-132 (132)
47 PF05496 RuvB_N: Holliday junc 99.9 3.4E-21 7.3E-26 173.0 16.0 195 164-388 18-226 (233)
48 PRK10865 protein disaggregatio 99.9 1.4E-21 3E-26 211.6 12.7 235 136-392 539-829 (857)
49 KOG0736 Peroxisome assembly fa 99.9 3.2E-20 6.8E-25 188.5 21.0 241 169-419 400-661 (953)
50 TIGR03346 chaperone_ClpB ATP-d 99.9 9.2E-22 2E-26 213.7 8.7 237 136-394 536-828 (852)
51 COG2255 RuvB Holliday junction 99.9 6E-20 1.3E-24 167.9 19.1 219 164-412 20-252 (332)
52 TIGR00763 lon ATP-dependent pr 99.8 3.9E-21 8.4E-26 207.1 12.2 223 169-409 319-584 (775)
53 PRK00080 ruvB Holliday junctio 99.8 1.8E-19 4E-24 176.2 22.6 218 164-411 19-250 (328)
54 TIGR00635 ruvB Holliday juncti 99.8 2.2E-19 4.8E-24 174.0 21.6 214 168-411 2-229 (305)
55 TIGR02902 spore_lonB ATP-depen 99.8 3.5E-20 7.7E-25 191.2 14.9 220 162-410 57-331 (531)
56 TIGR03345 VI_ClpV1 type VI sec 99.8 2.6E-20 5.7E-25 201.1 11.8 233 136-393 537-832 (852)
57 KOG1051 Chaperone HSP104 and r 99.8 7.4E-20 1.6E-24 192.8 13.5 263 51-355 464-785 (898)
58 COG0466 Lon ATP-dependent Lon 99.8 1.4E-19 3.1E-24 183.5 15.0 225 167-409 320-582 (782)
59 TIGR02639 ClpA ATP-dependent C 99.8 1.3E-18 2.9E-23 186.5 20.1 223 165-412 177-430 (731)
60 COG2256 MGS1 ATPase related to 99.8 1.6E-18 3.4E-23 165.9 17.7 204 165-413 19-240 (436)
61 PRK11034 clpA ATP-dependent Cl 99.8 1.8E-18 4E-23 183.6 18.3 208 169-393 457-717 (758)
62 KOG2004 Mitochondrial ATP-depe 99.8 3.7E-19 8.1E-24 179.6 10.9 196 140-354 382-596 (906)
63 PRK14956 DNA polymerase III su 99.8 1.1E-17 2.4E-22 167.3 19.9 204 163-408 11-243 (484)
64 PRK11034 clpA ATP-dependent Cl 99.8 1.1E-17 2.3E-22 177.8 21.1 221 167-412 183-434 (758)
65 TIGR02928 orc1/cdc6 family rep 99.8 3.1E-17 6.7E-22 163.0 23.0 223 168-413 13-276 (365)
66 TIGR02639 ClpA ATP-dependent C 99.8 5E-18 1.1E-22 182.1 18.5 204 169-393 453-713 (731)
67 CHL00095 clpC Clp protease ATP 99.8 5.2E-18 1.1E-22 184.0 18.2 231 136-392 480-782 (821)
68 COG0464 SpoVK ATPases of the A 99.8 2.1E-17 4.5E-22 170.6 21.5 222 188-414 2-229 (494)
69 PRK14962 DNA polymerase III su 99.8 4.5E-17 9.9E-22 165.1 20.9 207 163-411 7-242 (472)
70 PRK07003 DNA polymerase III su 99.8 3.9E-17 8.4E-22 169.2 19.9 203 163-407 9-240 (830)
71 PRK00411 cdc6 cell division co 99.8 1.5E-16 3.1E-21 159.8 23.0 224 168-413 28-284 (394)
72 PRK06893 DNA replication initi 99.8 8.8E-17 1.9E-21 149.1 19.6 213 162-409 8-228 (229)
73 PRK10787 DNA-binding ATP-depen 99.8 2E-18 4.4E-23 184.6 9.8 223 168-409 320-580 (784)
74 PRK13342 recombination factor 99.7 7.8E-17 1.7E-21 162.3 20.4 200 164-411 6-219 (413)
75 PRK04195 replication factor C 99.7 9.3E-17 2E-21 164.8 20.4 208 162-407 6-221 (482)
76 PRK00149 dnaA chromosomal repl 99.7 9E-17 2E-21 163.7 19.9 191 205-413 149-351 (450)
77 TIGR00362 DnaA chromosomal rep 99.7 1.2E-16 2.6E-21 160.8 20.4 192 204-413 136-339 (405)
78 PRK14960 DNA polymerase III su 99.7 1.1E-16 2.3E-21 164.3 20.1 204 164-409 9-241 (702)
79 PRK12323 DNA polymerase III su 99.7 4.9E-17 1.1E-21 166.4 17.4 202 163-406 9-244 (700)
80 PRK05342 clpX ATP-dependent pr 99.7 9.5E-17 2.1E-21 159.9 18.7 233 171-405 72-399 (412)
81 PRK14961 DNA polymerase III su 99.7 2.5E-16 5.4E-21 156.0 21.5 204 164-409 10-242 (363)
82 PRK14958 DNA polymerase III su 99.7 8.9E-17 1.9E-21 164.6 18.5 207 163-411 9-244 (509)
83 PRK07994 DNA polymerase III su 99.7 2.9E-16 6.2E-21 163.2 21.1 204 164-409 10-242 (647)
84 PRK14949 DNA polymerase III su 99.7 2.5E-16 5.4E-21 166.1 20.7 194 163-388 9-225 (944)
85 TIGR03420 DnaA_homol_Hda DnaA 99.7 5.7E-16 1.2E-20 143.4 20.9 203 166-408 11-225 (226)
86 TIGR03345 VI_ClpV1 type VI sec 99.7 6.1E-16 1.3E-20 167.4 22.9 221 165-411 182-431 (852)
87 PRK08084 DNA replication initi 99.7 1.1E-15 2.5E-20 142.2 21.3 208 163-409 15-234 (235)
88 PRK12402 replication factor C 99.7 9.6E-16 2.1E-20 150.5 21.8 210 163-410 8-248 (337)
89 PRK06645 DNA polymerase III su 99.7 5.8E-16 1.3E-20 157.7 20.6 216 163-411 14-256 (507)
90 PRK08691 DNA polymerase III su 99.7 3.2E-16 6.9E-21 162.2 18.4 213 163-411 9-244 (709)
91 PTZ00112 origin recognition co 99.7 8.1E-16 1.8E-20 160.1 20.8 220 169-414 754-1009(1164)
92 PLN03025 replication factor C 99.7 8.9E-16 1.9E-20 149.6 20.1 200 163-406 6-218 (319)
93 TIGR00382 clpX endopeptidase C 99.7 3.9E-16 8.4E-21 154.8 17.5 223 170-394 77-387 (413)
94 PRK14964 DNA polymerase III su 99.7 9.4E-16 2E-20 155.0 20.4 204 164-409 7-239 (491)
95 PRK08903 DnaA regulatory inact 99.7 2.3E-15 5.1E-20 139.6 21.4 202 164-409 12-224 (227)
96 PRK14951 DNA polymerase III su 99.7 7.3E-16 1.6E-20 159.8 19.2 205 163-409 9-247 (618)
97 TIGR00390 hslU ATP-dependent p 99.7 4.7E-16 1E-20 152.2 16.7 243 170-414 12-433 (441)
98 PHA02544 44 clamp loader, smal 99.7 1.3E-15 2.7E-20 148.5 19.4 160 162-354 13-173 (316)
99 PRK14957 DNA polymerase III su 99.7 1.4E-15 3.1E-20 155.8 20.3 205 164-410 10-243 (546)
100 PRK05201 hslU ATP-dependent pr 99.7 8.3E-16 1.8E-20 150.5 17.4 243 170-414 15-435 (443)
101 PRK14952 DNA polymerase III su 99.7 1.8E-15 3.9E-20 156.4 20.4 205 163-408 6-241 (584)
102 TIGR02640 gas_vesic_GvpN gas v 99.7 1.4E-15 2.9E-20 144.0 17.8 190 204-414 21-260 (262)
103 PRK08727 hypothetical protein; 99.7 4.9E-15 1.1E-19 137.8 21.2 179 205-410 42-230 (233)
104 PRK14088 dnaA chromosomal repl 99.7 2.2E-15 4.7E-20 152.4 19.9 191 205-412 131-333 (440)
105 COG1474 CDC6 Cdc6-related prot 99.7 7.7E-15 1.7E-19 144.3 23.1 218 171-413 18-267 (366)
106 PRK14963 DNA polymerase III su 99.7 2.7E-15 5.8E-20 153.4 20.6 205 163-410 7-239 (504)
107 PRK05563 DNA polymerase III su 99.7 3E-15 6.5E-20 155.4 21.1 204 163-408 9-241 (559)
108 PRK05642 DNA replication initi 99.7 6.3E-15 1.4E-19 137.1 21.1 180 204-409 45-233 (234)
109 PRK14969 DNA polymerase III su 99.7 1.2E-15 2.7E-20 157.2 17.7 204 164-409 10-242 (527)
110 PRK14086 dnaA chromosomal repl 99.7 5.7E-15 1.2E-19 151.6 22.0 191 205-413 315-517 (617)
111 PRK10865 protein disaggregatio 99.7 1.1E-15 2.4E-20 165.9 17.7 169 165-359 173-359 (857)
112 PRK07940 DNA polymerase III su 99.7 1.6E-15 3.5E-20 150.5 17.0 184 167-381 2-212 (394)
113 PRK13341 recombination factor 99.7 2.7E-15 5.9E-20 158.8 19.8 206 164-411 22-247 (725)
114 PRK07764 DNA polymerase III su 99.7 3.4E-15 7.4E-20 159.9 20.4 203 163-406 8-241 (824)
115 PRK05896 DNA polymerase III su 99.7 3.7E-15 8E-20 153.0 19.7 203 163-407 9-240 (605)
116 TIGR03346 chaperone_ClpB ATP-d 99.7 8.6E-15 1.9E-19 159.5 23.5 201 165-391 168-396 (852)
117 KOG2028 ATPase related to the 99.7 2E-15 4.3E-20 142.4 15.9 209 165-411 133-368 (554)
118 PRK14959 DNA polymerase III su 99.7 4.5E-15 9.7E-20 153.1 19.9 203 164-408 10-241 (624)
119 PRK12422 chromosomal replicati 99.7 1.1E-14 2.3E-19 147.1 22.3 193 205-413 142-345 (445)
120 TIGR02397 dnaX_nterm DNA polym 99.7 6.5E-15 1.4E-19 145.7 20.1 204 164-409 8-240 (355)
121 CHL00081 chlI Mg-protoporyphyr 99.7 1E-14 2.3E-19 141.6 20.5 227 164-416 11-327 (350)
122 CHL00095 clpC Clp protease ATP 99.7 5E-15 1.1E-19 160.9 20.3 199 167-391 176-401 (821)
123 PRK07133 DNA polymerase III su 99.7 7.1E-15 1.5E-19 153.7 20.1 210 163-408 11-240 (725)
124 TIGR02903 spore_lon_C ATP-depe 99.6 1.2E-14 2.5E-19 152.6 21.1 217 166-411 150-430 (615)
125 PRK14965 DNA polymerase III su 99.6 5.5E-15 1.2E-19 154.1 18.3 203 163-407 9-240 (576)
126 PRK14953 DNA polymerase III su 99.6 1.1E-14 2.4E-19 148.5 20.0 210 164-409 10-242 (486)
127 PRK13407 bchI magnesium chelat 99.6 4.6E-15 1E-19 143.8 16.3 224 166-416 4-311 (334)
128 PRK08451 DNA polymerase III su 99.6 1.3E-14 2.9E-19 147.9 20.0 202 164-407 8-238 (535)
129 PF05673 DUF815: Protein of un 99.6 1E-14 2.2E-19 133.0 16.8 193 164-385 21-243 (249)
130 PRK14970 DNA polymerase III su 99.6 2.1E-14 4.5E-19 142.8 20.4 211 163-409 10-231 (367)
131 PRK00440 rfc replication facto 99.6 2E-14 4.3E-19 140.0 19.7 205 162-410 9-225 (319)
132 PRK14087 dnaA chromosomal repl 99.6 1E-14 2.2E-19 147.7 18.0 191 205-413 142-350 (450)
133 PRK06647 DNA polymerase III su 99.6 1.6E-14 3.4E-19 149.6 19.6 209 164-408 10-241 (563)
134 PF00308 Bac_DnaA: Bacterial d 99.6 1.8E-14 3.9E-19 132.5 17.9 170 205-391 35-216 (219)
135 COG3829 RocR Transcriptional r 99.6 1.1E-15 2.3E-20 151.9 10.4 211 165-405 240-491 (560)
136 KOG0989 Replication factor C, 99.6 1.3E-14 2.8E-19 134.4 16.5 190 164-389 30-236 (346)
137 PRK06305 DNA polymerase III su 99.6 3.4E-14 7.4E-19 143.9 21.0 202 165-408 12-243 (451)
138 PRK09111 DNA polymerase III su 99.6 3.1E-14 6.8E-19 148.0 21.1 210 164-409 18-255 (598)
139 COG1224 TIP49 DNA helicase TIP 99.6 3.6E-14 7.7E-19 133.8 19.2 132 264-415 292-436 (450)
140 PRK14955 DNA polymerase III su 99.6 1.6E-14 3.5E-19 144.7 17.6 213 164-408 10-254 (397)
141 TIGR02030 BchI-ChlI magnesium 99.6 2.5E-14 5.4E-19 139.0 17.3 221 168-416 2-314 (337)
142 PRK11608 pspF phage shock prot 99.6 2.5E-14 5.4E-19 139.5 16.5 200 168-391 4-240 (326)
143 COG0593 DnaA ATPase involved i 99.6 1.4E-13 2.9E-18 135.3 21.5 193 204-414 113-316 (408)
144 TIGR02974 phageshock_pspF psp 99.6 2.3E-14 4.9E-19 139.7 15.9 193 172-391 1-233 (329)
145 COG2204 AtoC Response regulato 99.6 5.4E-15 1.2E-19 147.1 11.6 211 167-405 138-385 (464)
146 TIGR01817 nifA Nif-specific re 99.6 1.4E-14 3E-19 150.9 14.9 213 166-405 192-439 (534)
147 PRK06620 hypothetical protein; 99.6 8.7E-14 1.9E-18 127.4 18.3 164 205-408 45-213 (214)
148 PRK14954 DNA polymerase III su 99.6 1.5E-13 3.3E-18 143.1 21.1 213 164-408 10-254 (620)
149 TIGR02442 Cob-chelat-sub cobal 99.6 4.9E-14 1.1E-18 148.8 16.6 222 168-416 2-309 (633)
150 PRK11388 DNA-binding transcrip 99.6 3.5E-14 7.7E-19 150.9 15.8 213 166-408 321-568 (638)
151 PRK15424 propionate catabolism 99.6 5.9E-14 1.3E-18 144.1 16.2 211 167-404 216-478 (538)
152 TIGR02329 propionate_PrpR prop 99.6 7.4E-14 1.6E-18 143.5 16.7 213 167-406 209-465 (526)
153 COG2812 DnaX DNA polymerase II 99.6 5.2E-14 1.1E-18 142.0 15.2 213 163-411 9-244 (515)
154 PRK14950 DNA polymerase III su 99.6 1.9E-13 4.1E-18 143.2 20.1 210 163-408 9-242 (585)
155 COG3604 FhlA Transcriptional r 99.6 1.6E-14 3.4E-19 141.9 11.0 201 166-391 219-456 (550)
156 PRK14948 DNA polymerase III su 99.6 2.5E-13 5.4E-18 142.2 20.5 206 164-406 10-240 (620)
157 COG1221 PspF Transcriptional r 99.6 2.3E-14 5.1E-19 140.2 11.6 202 165-392 73-310 (403)
158 TIGR01650 PD_CobS cobaltochela 99.6 2.5E-14 5.5E-19 136.8 11.5 140 203-356 63-235 (327)
159 PRK10820 DNA-binding transcrip 99.5 1.2E-13 2.6E-18 142.9 17.1 210 165-404 199-447 (520)
160 PRK05022 anaerobic nitric oxid 99.5 1.3E-13 2.8E-18 142.5 16.6 198 168-392 185-421 (509)
161 PRK14971 DNA polymerase III su 99.5 6E-13 1.3E-17 139.3 21.5 203 164-408 11-243 (614)
162 PRK09087 hypothetical protein; 99.5 5.4E-13 1.2E-17 123.3 17.0 172 205-411 45-222 (226)
163 PRK13531 regulatory ATPase Rav 99.5 1.3E-12 2.9E-17 130.6 20.7 218 170-416 20-288 (498)
164 cd00009 AAA The AAA+ (ATPases 99.5 4.6E-13 1E-17 114.0 15.0 141 174-340 2-151 (151)
165 TIGR00368 Mg chelatase-related 99.5 5.1E-13 1.1E-17 136.3 17.9 212 167-409 189-497 (499)
166 PF07724 AAA_2: AAA domain (Cd 99.5 3.1E-14 6.7E-19 125.6 7.4 115 203-319 2-130 (171)
167 PRK15429 formate hydrogenlyase 99.5 8E-13 1.7E-17 141.6 16.9 201 167-391 373-609 (686)
168 PHA02244 ATPase-like protein 99.5 1.4E-12 3E-17 126.3 16.8 144 174-343 100-263 (383)
169 COG0714 MoxR-like ATPases [Gen 99.5 2.4E-12 5.1E-17 126.1 18.7 216 171-414 25-299 (329)
170 TIGR03015 pepcterm_ATPase puta 99.5 4.1E-12 8.9E-17 120.7 19.7 192 205-412 44-267 (269)
171 TIGR00764 lon_rel lon-related 99.5 3.8E-12 8.2E-17 133.3 20.2 136 265-413 219-393 (608)
172 PF00158 Sigma54_activat: Sigm 99.4 1E-12 2.2E-17 115.6 12.3 122 172-318 1-143 (168)
173 PF01078 Mg_chelatase: Magnesi 99.4 1.3E-13 2.8E-18 123.3 5.8 146 168-344 1-205 (206)
174 COG2607 Predicted ATPase (AAA+ 99.4 1.2E-11 2.6E-16 111.2 17.9 193 164-385 54-275 (287)
175 smart00350 MCM minichromosome 99.4 3.7E-12 8E-17 131.5 17.0 196 206-414 238-507 (509)
176 PRK09112 DNA polymerase III su 99.4 4.7E-12 1E-16 124.2 16.9 189 164-385 17-242 (351)
177 TIGR02031 BchD-ChlD magnesium 99.4 4.9E-12 1.1E-16 132.3 17.6 196 205-416 17-263 (589)
178 PRK10923 glnG nitrogen regulat 99.4 3.4E-12 7.5E-17 131.1 14.9 214 168-408 136-385 (469)
179 KOG1969 DNA replication checkp 99.4 7E-12 1.5E-16 127.9 16.6 214 160-395 261-519 (877)
180 KOG1942 DNA helicase, TBP-inte 99.4 2.6E-11 5.6E-16 111.8 18.2 134 263-416 296-443 (456)
181 COG1219 ClpX ATP-dependent pro 99.4 3.1E-12 6.7E-17 119.1 12.3 215 171-393 62-369 (408)
182 PF05621 TniB: Bacterial TniB 99.4 3.3E-11 7.2E-16 113.5 18.8 190 204-406 61-284 (302)
183 PRK07471 DNA polymerase III su 99.4 1.9E-11 4.1E-16 120.5 17.9 184 164-382 13-237 (365)
184 TIGR02915 PEP_resp_reg putativ 99.4 7.9E-12 1.7E-16 127.6 15.3 210 168-404 137-382 (445)
185 COG0542 clpA ATP-binding subun 99.4 3.7E-11 8.1E-16 126.0 19.7 169 166-359 166-351 (786)
186 PRK05564 DNA polymerase III su 99.4 1.9E-11 4E-16 118.9 16.3 169 168-374 2-182 (313)
187 PF07728 AAA_5: AAA domain (dy 99.4 1.3E-12 2.8E-17 111.6 7.2 112 206-332 1-139 (139)
188 PRK09862 putative ATP-dependen 99.4 2.1E-11 4.5E-16 124.1 16.7 213 167-410 188-491 (506)
189 PF06068 TIP49: TIP49 C-termin 99.4 1.6E-11 3.5E-16 117.8 14.9 102 264-385 279-393 (398)
190 PRK07399 DNA polymerase III su 99.3 2.8E-11 6E-16 117.1 16.3 183 168-385 2-223 (314)
191 PRK11331 5-methylcytosine-spec 99.3 1.6E-11 3.5E-16 121.9 14.7 144 169-340 174-357 (459)
192 KOG0745 Putative ATP-dependent 99.3 4.9E-11 1.1E-15 115.3 16.3 188 205-394 227-511 (564)
193 COG1220 HslU ATP-dependent pro 99.3 1.8E-11 3.9E-16 114.9 12.6 86 264-351 251-346 (444)
194 PRK15115 response regulator Gl 99.3 2.9E-11 6.3E-16 123.4 14.7 205 171-408 135-381 (444)
195 PRK11361 acetoacetate metaboli 99.3 3.7E-11 8E-16 123.1 15.3 214 168-408 141-390 (457)
196 TIGR01818 ntrC nitrogen regula 99.3 2.2E-11 4.7E-16 125.0 13.0 213 169-408 133-381 (463)
197 TIGR00678 holB DNA polymerase 99.3 4.1E-11 8.8E-16 107.8 13.2 143 203-374 13-183 (188)
198 PRK13765 ATP-dependent proteas 99.3 5.1E-11 1.1E-15 124.6 15.8 134 264-410 227-399 (637)
199 PRK04132 replication factor C 99.3 9.9E-11 2.2E-15 125.1 17.9 173 203-406 563-749 (846)
200 KOG1514 Origin recognition com 99.3 1.6E-10 3.6E-15 117.8 18.4 221 171-414 397-658 (767)
201 KOG2680 DNA helicase TIP49, TB 99.3 1.6E-10 3.4E-15 107.0 16.2 132 264-415 289-433 (454)
202 COG3283 TyrR Transcriptional r 99.3 5.2E-11 1.1E-15 112.6 12.4 199 165-391 199-432 (511)
203 smart00382 AAA ATPases associa 99.3 5.2E-11 1.1E-15 100.4 11.4 126 204-341 2-147 (148)
204 COG0470 HolB ATPase involved i 99.2 1.1E-10 2.3E-15 113.9 14.6 147 171-349 2-176 (325)
205 PTZ00111 DNA replication licen 99.2 2.8E-10 6E-15 121.2 18.3 231 170-414 450-807 (915)
206 COG0606 Predicted ATPase with 99.2 7.9E-12 1.7E-16 123.1 5.5 213 167-410 176-484 (490)
207 PRK08058 DNA polymerase III su 99.2 1.1E-10 2.4E-15 114.1 13.2 149 168-352 3-180 (329)
208 PRK05707 DNA polymerase III su 99.2 2.6E-10 5.6E-15 111.0 15.6 130 203-354 21-178 (328)
209 COG1239 ChlI Mg-chelatase subu 99.2 2.4E-10 5.2E-15 111.2 14.9 225 167-418 14-329 (423)
210 KOG2227 Pre-initiation complex 99.2 8.7E-10 1.9E-14 107.9 16.7 226 168-415 148-419 (529)
211 TIGR00602 rad24 checkpoint pro 99.2 4.9E-10 1.1E-14 117.0 15.9 221 161-408 75-352 (637)
212 PRK08116 hypothetical protein; 99.2 2.1E-10 4.6E-15 108.7 11.2 123 204-343 114-251 (268)
213 PF14532 Sigma54_activ_2: Sigm 99.2 7.5E-11 1.6E-15 100.6 7.3 127 173-341 1-138 (138)
214 KOG0991 Replication factor C, 99.1 7.6E-10 1.7E-14 99.1 13.4 178 161-374 18-206 (333)
215 PF07726 AAA_3: ATPase family 99.1 1.3E-10 2.9E-15 95.7 7.5 115 206-333 1-130 (131)
216 smart00763 AAA_PrkA PrkA AAA d 99.1 9.9E-10 2.1E-14 106.5 14.7 167 168-356 48-329 (361)
217 PRK10365 transcriptional regul 99.1 7.1E-10 1.5E-14 113.0 14.3 210 171-407 140-385 (441)
218 PRK08181 transposase; Validate 99.1 1.1E-09 2.3E-14 103.5 14.3 100 204-319 106-209 (269)
219 PRK12377 putative replication 99.1 6.2E-10 1.3E-14 103.8 11.7 101 204-319 101-206 (248)
220 PF13177 DNA_pol3_delta2: DNA 99.1 9.7E-10 2.1E-14 96.3 12.2 134 174-341 1-161 (162)
221 KOG0741 AAA+-type ATPase [Post 99.1 1E-09 2.2E-14 108.6 13.4 143 203-352 537-684 (744)
222 PRK06871 DNA polymerase III su 99.1 8E-09 1.7E-13 100.0 17.2 128 203-353 23-178 (325)
223 PRK13406 bchD magnesium chelat 99.0 9.2E-09 2E-13 107.0 16.8 196 205-416 26-255 (584)
224 PRK07952 DNA replication prote 99.0 2.7E-09 5.9E-14 99.3 11.5 100 205-319 100-205 (244)
225 PRK06964 DNA polymerase III su 99.0 3.9E-09 8.5E-14 102.8 13.0 133 202-353 19-203 (342)
226 PRK06526 transposase; Provisio 99.0 1.1E-09 2.4E-14 102.8 8.6 100 204-319 98-201 (254)
227 PRK07993 DNA polymerase III su 99.0 1.2E-08 2.5E-13 99.7 15.6 131 203-352 23-178 (334)
228 PRK08769 DNA polymerase III su 99.0 2.2E-08 4.7E-13 96.9 16.6 131 203-352 25-183 (319)
229 PRK06835 DNA replication prote 99.0 4E-09 8.7E-14 102.5 11.5 121 205-342 184-318 (329)
230 PRK06090 DNA polymerase III su 98.9 2.5E-08 5.4E-13 96.3 15.1 128 203-352 24-178 (319)
231 PRK09183 transposase/IS protei 98.9 7.2E-09 1.6E-13 97.8 10.4 102 203-319 101-206 (259)
232 PRK08939 primosomal protein Dn 98.9 7.7E-09 1.7E-13 99.7 10.7 102 203-319 155-261 (306)
233 COG1484 DnaC DNA replication p 98.9 1.4E-08 3E-13 95.4 12.2 101 203-319 104-209 (254)
234 PF13173 AAA_14: AAA domain 98.9 1.3E-08 2.9E-13 85.5 10.9 120 205-345 3-126 (128)
235 COG3284 AcoR Transcriptional a 98.9 4.3E-09 9.3E-14 107.1 8.9 173 205-391 337-540 (606)
236 PF01695 IstB_IS21: IstB-like 98.9 2.7E-09 5.9E-14 94.9 5.6 100 203-318 46-149 (178)
237 PF01637 Arch_ATPase: Archaeal 98.9 1.9E-08 4.1E-13 92.8 11.2 182 173-381 2-232 (234)
238 KOG2035 Replication factor C, 98.9 1.7E-07 3.6E-12 86.4 16.7 179 164-374 7-220 (351)
239 PF03215 Rad17: Rad17 cell cyc 98.8 6.4E-08 1.4E-12 99.4 15.7 206 162-392 11-269 (519)
240 PRK08699 DNA polymerase III su 98.8 2.5E-08 5.5E-13 97.0 11.7 131 202-352 19-183 (325)
241 PRK06921 hypothetical protein; 98.8 3.1E-08 6.8E-13 93.8 11.1 103 204-318 117-224 (266)
242 KOG2170 ATPase of the AAA+ sup 98.8 8.4E-08 1.8E-12 89.4 13.4 129 170-319 82-225 (344)
243 KOG0990 Replication factor C, 98.8 2.9E-08 6.3E-13 93.2 10.0 161 163-357 34-206 (360)
244 PF00493 MCM: MCM2/3/5 family 98.8 9.1E-09 2E-13 100.6 7.0 221 170-413 24-328 (331)
245 KOG0480 DNA replication licens 98.7 8.1E-08 1.8E-12 97.2 11.6 231 168-413 343-645 (764)
246 COG3267 ExeA Type II secretory 98.7 9.3E-07 2E-11 81.0 17.1 184 206-405 53-267 (269)
247 COG1241 MCM2 Predicted ATPase 98.7 2E-07 4.3E-12 97.5 14.3 192 206-414 321-595 (682)
248 KOG0478 DNA replication licens 98.7 4.9E-07 1.1E-11 92.4 16.5 195 206-414 464-727 (804)
249 PF12775 AAA_7: P-loop contain 98.7 5E-08 1.1E-12 92.6 8.3 139 204-356 33-195 (272)
250 PF13401 AAA_22: AAA domain; P 98.7 9.7E-08 2.1E-12 80.2 8.8 73 204-276 4-100 (131)
251 PF12774 AAA_6: Hydrolytic ATP 98.7 2.1E-07 4.6E-12 86.0 11.4 158 205-389 33-225 (231)
252 PF05729 NACHT: NACHT domain 98.6 7.4E-07 1.6E-11 77.6 12.9 142 206-356 2-165 (166)
253 PF03969 AFG1_ATPase: AFG1-lik 98.6 1.8E-07 3.8E-12 92.2 9.0 102 201-319 59-168 (362)
254 COG4650 RtcR Sigma54-dependent 98.5 1.1E-06 2.3E-11 81.8 12.0 215 172-413 186-445 (531)
255 PRK05818 DNA polymerase III su 98.5 4E-06 8.6E-11 78.1 15.9 121 202-341 5-147 (261)
256 PRK05917 DNA polymerase III su 98.5 7E-07 1.5E-11 84.8 11.1 121 203-342 18-155 (290)
257 cd01120 RecA-like_NTPases RecA 98.5 9.2E-07 2E-11 76.6 10.5 109 207-319 2-137 (165)
258 COG1485 Predicted ATPase [Gene 98.5 5E-07 1.1E-11 86.4 9.0 101 201-318 62-170 (367)
259 KOG1970 Checkpoint RAD17-RFC c 98.5 6.4E-06 1.4E-10 82.7 17.0 211 161-391 73-320 (634)
260 KOG2228 Origin recognition com 98.4 2.7E-06 5.8E-11 80.7 12.0 163 169-354 23-219 (408)
261 PF14516 AAA_35: AAA-like doma 98.4 3.4E-05 7.4E-10 75.6 19.7 173 203-388 30-244 (331)
262 PRK07276 DNA polymerase III su 98.4 1.3E-05 2.8E-10 76.4 16.2 143 175-351 7-172 (290)
263 TIGR02237 recomb_radB DNA repa 98.4 1.5E-06 3.2E-11 79.4 9.2 78 200-277 8-111 (209)
264 PRK07132 DNA polymerase III su 98.4 3E-05 6.4E-10 74.5 18.3 125 204-352 18-160 (299)
265 PF00910 RNA_helicase: RNA hel 98.4 1.2E-06 2.5E-11 71.2 7.4 23 207-229 1-23 (107)
266 PLN03210 Resistant to P. syrin 98.4 8.7E-06 1.9E-10 92.5 16.6 177 165-376 179-389 (1153)
267 KOG0482 DNA replication licens 98.3 4.7E-06 1E-10 82.7 11.4 227 171-417 343-644 (721)
268 PF06309 Torsin: Torsin; Inte 98.3 2.7E-06 5.8E-11 70.1 8.0 51 170-228 25-77 (127)
269 KOG0477 DNA replication licens 98.3 2.2E-06 4.8E-11 86.8 8.9 198 206-415 484-761 (854)
270 PF00931 NB-ARC: NB-ARC domain 98.3 2.8E-05 6.1E-10 74.4 16.0 173 176-383 2-202 (287)
271 KOG2543 Origin recognition com 98.3 1.3E-05 2.7E-10 77.4 13.1 161 170-354 6-193 (438)
272 COG1618 Predicted nucleotide k 98.3 1.4E-05 2.9E-10 68.3 11.2 25 204-228 5-29 (179)
273 cd01124 KaiC KaiC is a circadi 98.2 1.4E-05 3.1E-10 71.3 11.5 71 206-276 1-108 (187)
274 cd01121 Sms Sms (bacterial rad 98.2 1.2E-05 2.6E-10 79.7 11.5 80 200-279 78-174 (372)
275 COG5271 MDN1 AAA ATPase contai 98.2 5.5E-06 1.2E-10 91.5 9.5 139 204-357 1543-1706(4600)
276 PRK11823 DNA repair protein Ra 98.2 1.2E-05 2.5E-10 81.9 11.5 80 200-279 76-172 (446)
277 PRK08533 flagellar accessory p 98.2 2.3E-05 5E-10 72.7 12.4 110 200-319 20-163 (230)
278 TIGR01618 phage_P_loop phage n 98.2 5.7E-06 1.2E-10 75.7 8.2 108 204-315 12-141 (220)
279 TIGR02012 tigrfam_recA protein 98.2 1E-05 2.2E-10 78.2 10.2 118 200-317 51-190 (321)
280 KOG0481 DNA replication licens 98.2 2.5E-05 5.5E-10 77.7 12.9 198 206-415 366-643 (729)
281 COG1373 Predicted ATPase (AAA+ 98.2 0.00011 2.5E-09 73.6 17.5 123 206-348 39-161 (398)
282 cd00983 recA RecA is a bacter 98.1 1.1E-05 2.4E-10 78.0 9.7 118 200-317 51-190 (325)
283 PRK09361 radB DNA repair and r 98.1 1.1E-05 2.5E-10 74.4 9.4 39 200-238 19-60 (225)
284 TIGR02688 conserved hypothetic 98.1 4.2E-05 9.1E-10 75.8 13.7 79 203-300 208-290 (449)
285 COG5271 MDN1 AAA ATPase contai 98.1 2E-05 4.2E-10 87.4 11.6 135 205-354 889-1047(4600)
286 PF07693 KAP_NTPase: KAP famil 98.1 0.00018 3.9E-09 70.2 17.2 81 262-357 171-266 (325)
287 PRK06067 flagellar accessory p 98.1 2.1E-05 4.6E-10 73.2 9.7 77 200-276 21-133 (234)
288 PHA00729 NTP-binding motif con 98.1 4.9E-06 1.1E-10 76.0 5.0 25 205-229 18-42 (226)
289 KOG1968 Replication factor C, 98.0 1.4E-05 3.1E-10 86.3 8.9 202 168-390 318-535 (871)
290 PRK15455 PrkA family serine pr 98.0 7.4E-06 1.6E-10 83.8 6.4 64 167-237 73-137 (644)
291 PF13207 AAA_17: AAA domain; P 98.0 4.3E-06 9.3E-11 69.1 3.9 31 207-237 2-32 (121)
292 cd01394 radB RadB. The archaea 98.0 2.7E-05 5.8E-10 71.6 9.3 39 200-238 15-56 (218)
293 KOG1051 Chaperone HSP104 and r 98.0 8E-05 1.7E-09 80.1 13.5 162 169-356 185-365 (898)
294 cd01128 rho_factor Transcripti 98.0 7.3E-05 1.6E-09 70.0 11.6 115 203-317 15-165 (249)
295 COG4619 ABC-type uncharacteriz 98.0 5.3E-05 1.2E-09 65.3 9.2 28 201-228 26-53 (223)
296 PHA02624 large T antigen; Prov 98.0 2.3E-05 5.1E-10 80.6 8.2 123 200-340 427-561 (647)
297 PF13191 AAA_16: AAA ATPase do 97.9 7.4E-06 1.6E-10 72.8 4.1 59 172-240 2-63 (185)
298 PRK00131 aroK shikimate kinase 97.9 1.1E-05 2.3E-10 71.1 4.4 35 202-236 2-36 (175)
299 PRK08118 topology modulation p 97.9 2.1E-05 4.6E-10 69.2 6.1 32 206-237 3-34 (167)
300 PRK09354 recA recombinase A; P 97.9 7E-05 1.5E-09 73.1 9.8 78 200-277 56-152 (349)
301 TIGR00416 sms DNA repair prote 97.9 0.00011 2.4E-09 74.9 11.6 79 200-278 90-185 (454)
302 PRK00771 signal recognition pa 97.9 0.00038 8.2E-09 70.4 15.2 37 203-239 94-133 (437)
303 PRK09376 rho transcription ter 97.9 0.0001 2.3E-09 72.5 10.7 113 204-316 169-317 (416)
304 PF04665 Pox_A32: Poxvirus A32 97.9 0.00029 6.4E-09 65.2 13.1 134 202-354 11-170 (241)
305 PF05707 Zot: Zonular occluden 97.9 3.3E-05 7.1E-10 69.7 6.8 123 207-341 3-146 (193)
306 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00019 4.1E-09 66.9 12.1 38 200-237 17-57 (237)
307 COG3854 SpoIIIAA ncharacterize 97.9 0.00012 2.6E-09 66.2 10.0 70 205-274 138-229 (308)
308 cd01131 PilT Pilus retraction 97.8 7.4E-05 1.6E-09 67.7 8.8 67 206-272 3-83 (198)
309 PF06745 KaiC: KaiC; InterPro 97.8 0.0001 2.2E-09 68.1 9.7 76 200-275 15-127 (226)
310 KOG2383 Predicted ATPase [Gene 97.8 7.7E-05 1.7E-09 72.5 8.9 27 202-228 112-138 (467)
311 PRK07261 topology modulation p 97.8 3.8E-05 8.2E-10 67.9 6.4 33 206-238 2-34 (171)
312 PRK04841 transcriptional regul 97.8 0.00069 1.5E-08 75.4 17.8 157 204-382 32-224 (903)
313 PF13671 AAA_33: AAA domain; P 97.8 5.9E-05 1.3E-09 64.2 7.2 35 207-243 2-36 (143)
314 PHA02774 E1; Provisional 97.8 9.6E-05 2.1E-09 75.9 9.7 134 200-361 430-588 (613)
315 PRK05973 replicative DNA helic 97.8 0.00023 5E-09 66.0 11.4 39 200-238 60-101 (237)
316 cd01393 recA_like RecA is a b 97.8 8.7E-05 1.9E-09 68.5 8.8 40 200-239 15-63 (226)
317 COG1116 TauB ABC-type nitrate/ 97.8 4.8E-05 1E-09 69.9 6.8 27 202-228 27-53 (248)
318 cd01123 Rad51_DMC1_radA Rad51_ 97.8 7.8E-05 1.7E-09 69.3 8.4 117 200-317 15-168 (235)
319 PF03266 NTPase_1: NTPase; In 97.8 2E-05 4.3E-10 69.4 3.9 23 206-228 1-23 (168)
320 COG2804 PulE Type II secretory 97.7 8E-05 1.7E-09 74.9 7.9 112 146-274 213-338 (500)
321 PF00448 SRP54: SRP54-type pro 97.7 0.00021 4.6E-09 64.5 10.0 89 204-301 1-112 (196)
322 TIGR02858 spore_III_AA stage I 97.7 0.0001 2.2E-09 69.9 8.1 69 205-273 112-204 (270)
323 PRK04296 thymidine kinase; Pro 97.7 0.0003 6.6E-09 63.2 10.8 69 206-275 4-90 (190)
324 cd03238 ABC_UvrA The excision 97.7 0.00026 5.7E-09 62.7 10.2 118 201-339 18-162 (176)
325 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.0003 6.4E-09 64.5 10.8 22 205-226 30-51 (213)
326 cd03283 ABC_MutS-like MutS-lik 97.7 0.00017 3.8E-09 65.3 9.1 26 202-227 23-48 (199)
327 PF13604 AAA_30: AAA domain; P 97.7 8.5E-05 1.8E-09 67.2 7.1 34 205-238 19-55 (196)
328 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00036 7.7E-09 66.1 11.5 94 167-274 57-160 (264)
329 cd00984 DnaB_C DnaB helicase C 97.7 0.00017 3.7E-09 67.3 9.3 38 200-237 9-50 (242)
330 PRK10536 hypothetical protein; 97.7 0.00037 7.9E-09 65.0 11.1 45 168-227 53-97 (262)
331 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.00036 7.7E-09 66.0 11.2 38 200-237 32-72 (259)
332 PRK12723 flagellar biosynthesi 97.7 0.00039 8.4E-09 69.2 11.8 131 203-347 173-328 (388)
333 cd03216 ABC_Carb_Monos_I This 97.7 0.00025 5.4E-09 62.1 9.3 104 201-318 23-141 (163)
334 TIGR01420 pilT_fam pilus retra 97.7 6.3E-05 1.4E-09 74.1 6.1 71 203-273 121-205 (343)
335 PRK06762 hypothetical protein; 97.7 0.00014 3E-09 63.7 7.6 38 205-242 3-40 (166)
336 PRK05800 cobU adenosylcobinami 97.7 0.0003 6.5E-09 62.0 9.6 95 206-303 3-114 (170)
337 cd00046 DEXDc DEAD-like helica 97.7 0.00041 8.9E-09 57.7 10.1 23 206-228 2-24 (144)
338 COG0703 AroK Shikimate kinase 97.7 0.00012 2.7E-09 63.8 6.7 32 205-236 3-34 (172)
339 TIGR03880 KaiC_arch_3 KaiC dom 97.6 0.00067 1.4E-08 62.6 11.9 39 200-238 12-53 (224)
340 PRK14974 cell division protein 97.6 0.0003 6.4E-09 68.7 9.9 74 203-276 139-235 (336)
341 PF01745 IPT: Isopentenyl tran 97.6 0.00011 2.3E-09 66.1 6.1 135 206-357 3-142 (233)
342 KOG3928 Mitochondrial ribosome 97.6 0.0049 1.1E-07 60.5 17.8 50 335-385 405-458 (461)
343 PRK11889 flhF flagellar biosyn 97.6 0.00046 9.9E-09 68.1 10.9 96 176-275 217-332 (436)
344 COG4178 ABC-type uncharacteriz 97.6 0.0003 6.4E-09 72.9 10.1 105 200-319 415-574 (604)
345 COG1066 Sms Predicted ATP-depe 97.6 0.00034 7.3E-09 68.5 9.9 100 200-299 89-204 (456)
346 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00032 7E-09 61.6 9.1 102 201-319 24-148 (166)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00039 8.5E-09 59.6 9.3 100 201-319 23-127 (144)
348 PRK09519 recA DNA recombinatio 97.6 0.00029 6.3E-09 75.4 10.2 78 200-277 56-152 (790)
349 PRK13947 shikimate kinase; Pro 97.6 5.2E-05 1.1E-09 66.7 4.0 31 206-236 3-33 (171)
350 PRK03839 putative kinase; Prov 97.6 4.9E-05 1.1E-09 67.7 3.8 31 206-236 2-32 (180)
351 cd00544 CobU Adenosylcobinamid 97.6 0.0004 8.6E-09 61.2 9.4 105 207-317 2-124 (169)
352 COG1126 GlnQ ABC-type polar am 97.6 0.00038 8.2E-09 62.6 9.2 25 202-226 26-50 (240)
353 TIGR02238 recomb_DMC1 meiotic 97.6 0.00026 5.6E-09 68.6 8.9 116 200-316 92-243 (313)
354 PRK04328 hypothetical protein; 97.6 0.00082 1.8E-08 63.2 12.1 38 200-237 19-59 (249)
355 TIGR00767 rho transcription te 97.6 0.00043 9.2E-09 68.5 10.4 114 203-316 167-316 (415)
356 cd00464 SK Shikimate kinase (S 97.6 6.3E-05 1.4E-09 64.8 4.1 31 206-236 1-31 (154)
357 cd01122 GP4d_helicase GP4d_hel 97.6 0.00037 7.9E-09 66.3 9.7 38 200-237 26-67 (271)
358 PRK00625 shikimate kinase; Pro 97.6 5.7E-05 1.2E-09 66.8 3.8 31 206-236 2-32 (173)
359 KOG3347 Predicted nucleotide k 97.6 5.8E-05 1.3E-09 63.6 3.5 32 205-236 8-39 (176)
360 cd03243 ABC_MutS_homologs The 97.6 0.00052 1.1E-08 62.3 10.2 24 203-226 28-51 (202)
361 PRK12724 flagellar biosynthesi 97.6 0.00096 2.1E-08 66.6 12.7 70 203-272 222-308 (432)
362 TIGR02525 plasmid_TraJ plasmid 97.6 0.00057 1.2E-08 67.7 11.1 70 205-274 150-236 (372)
363 PRK13948 shikimate kinase; Pro 97.6 0.00013 2.9E-09 65.0 6.1 43 202-246 8-50 (182)
364 PRK04040 adenylate kinase; Pro 97.6 0.00048 1E-08 61.8 9.6 35 204-240 2-38 (188)
365 PRK10416 signal recognition pa 97.6 0.00068 1.5E-08 65.9 11.3 36 203-238 113-151 (318)
366 cd00227 CPT Chloramphenicol (C 97.6 6.6E-05 1.4E-09 66.6 3.9 36 205-240 3-38 (175)
367 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.00064 1.4E-08 61.6 10.5 21 205-225 29-49 (200)
368 PF00437 T2SE: Type II/IV secr 97.6 0.00012 2.5E-09 69.7 5.8 97 167-274 101-208 (270)
369 COG5245 DYN1 Dynein, heavy cha 97.6 0.00082 1.8E-08 74.6 12.5 181 201-395 1491-1720(3164)
370 PRK12339 2-phosphoglycerate ki 97.6 0.00087 1.9E-08 60.6 11.0 29 204-232 3-31 (197)
371 PLN03187 meiotic recombination 97.5 0.00043 9.3E-09 67.8 9.5 116 200-316 122-273 (344)
372 PRK14722 flhF flagellar biosyn 97.5 0.00036 7.8E-09 68.9 8.9 109 203-326 136-266 (374)
373 TIGR02782 TrbB_P P-type conjug 97.5 0.00018 3.9E-09 69.4 6.5 71 203-273 131-214 (299)
374 TIGR00064 ftsY signal recognit 97.5 0.0019 4.1E-08 61.4 13.4 74 202-275 70-166 (272)
375 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 8.3E-05 1.8E-09 66.2 3.8 36 207-244 2-37 (183)
376 COG4088 Predicted nucleotide k 97.5 0.00051 1.1E-08 61.2 8.5 22 207-228 4-25 (261)
377 PRK13949 shikimate kinase; Pro 97.5 8.1E-05 1.7E-09 65.7 3.6 31 206-236 3-33 (169)
378 TIGR02655 circ_KaiC circadian 97.5 0.00084 1.8E-08 69.3 11.6 77 200-276 259-366 (484)
379 PRK06581 DNA polymerase III su 97.5 0.0011 2.4E-08 60.9 10.8 133 205-358 16-165 (263)
380 PTZ00202 tuzin; Provisional 97.5 0.0074 1.6E-07 60.3 17.2 61 168-238 260-320 (550)
381 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.0008 1.7E-08 58.4 9.7 104 202-319 23-140 (157)
382 cd03246 ABCC_Protease_Secretio 97.5 0.0018 3.8E-08 57.3 11.9 104 202-319 26-156 (173)
383 PRK14532 adenylate kinase; Pro 97.5 8.8E-05 1.9E-09 66.5 3.6 37 206-244 2-38 (188)
384 PRK12608 transcription termina 97.5 0.00067 1.5E-08 66.6 9.9 113 204-316 133-281 (380)
385 smart00534 MUTSac ATPase domai 97.5 0.0012 2.6E-08 59.0 10.9 68 207-274 2-89 (185)
386 PRK04301 radA DNA repair and r 97.5 0.0004 8.7E-09 67.7 8.4 40 200-239 98-146 (317)
387 PLN02200 adenylate kinase fami 97.5 0.00023 4.9E-09 66.2 6.3 41 202-244 41-81 (234)
388 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.0017 3.6E-08 60.1 12.0 38 200-237 16-56 (229)
389 cd03214 ABC_Iron-Siderophores_ 97.5 0.00053 1.1E-08 61.0 8.3 107 201-320 22-159 (180)
390 PRK14531 adenylate kinase; Pro 97.5 0.00011 2.5E-09 65.6 4.0 36 205-242 3-38 (183)
391 cd02021 GntK Gluconate kinase 97.5 0.00011 2.3E-09 63.3 3.6 28 207-234 2-29 (150)
392 cd03282 ABC_MSH4_euk MutS4 hom 97.5 0.001 2.2E-08 60.5 10.2 24 203-226 28-51 (204)
393 PRK06217 hypothetical protein; 97.4 0.00012 2.5E-09 65.5 3.9 31 206-236 3-33 (183)
394 COG0563 Adk Adenylate kinase a 97.4 0.00015 3.3E-09 64.3 4.5 34 206-241 2-35 (178)
395 cd03247 ABCC_cytochrome_bd The 97.4 0.0014 3E-08 58.2 10.7 105 201-320 25-158 (178)
396 TIGR01313 therm_gnt_kin carboh 97.4 0.00012 2.6E-09 64.0 3.7 32 207-240 1-32 (163)
397 COG2874 FlaH Predicted ATPases 97.4 0.00089 1.9E-08 60.1 9.1 127 190-328 12-176 (235)
398 PTZ00088 adenylate kinase 1; P 97.4 0.00014 3.1E-09 67.2 4.4 38 204-243 6-43 (229)
399 PRK13695 putative NTPase; Prov 97.4 0.0022 4.8E-08 56.7 11.8 23 206-228 2-24 (174)
400 TIGR02236 recomb_radA DNA repa 97.4 0.00054 1.2E-08 66.5 8.6 40 200-239 91-139 (310)
401 COG1124 DppF ABC-type dipeptid 97.4 0.00054 1.2E-08 62.7 7.9 27 202-228 31-57 (252)
402 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0011 2.5E-08 58.8 9.9 104 202-318 23-131 (177)
403 PRK06696 uridine kinase; Valid 97.4 0.00027 5.9E-09 65.2 6.1 39 203-241 21-62 (223)
404 cd03228 ABCC_MRP_Like The MRP 97.4 0.0013 2.7E-08 58.1 10.1 106 201-321 25-157 (171)
405 COG1136 SalX ABC-type antimicr 97.4 0.0012 2.5E-08 60.6 10.0 26 202-227 29-54 (226)
406 PTZ00035 Rad51 protein; Provis 97.4 0.00072 1.6E-08 66.3 9.1 115 200-315 114-264 (337)
407 TIGR02239 recomb_RAD51 DNA rep 97.4 0.00055 1.2E-08 66.5 8.1 116 200-316 92-243 (316)
408 COG2805 PilT Tfp pilus assembl 97.4 0.0007 1.5E-08 63.8 8.3 70 205-274 126-209 (353)
409 cd01130 VirB11-like_ATPase Typ 97.4 0.00027 5.9E-09 63.3 5.5 71 203-273 24-110 (186)
410 cd01428 ADK Adenylate kinase ( 97.4 0.00015 3.3E-09 65.1 3.9 35 207-243 2-36 (194)
411 PRK14530 adenylate kinase; Pro 97.4 0.00016 3.4E-09 66.4 4.0 30 206-235 5-34 (215)
412 COG2884 FtsE Predicted ATPase 97.4 0.0017 3.6E-08 57.3 10.1 27 202-228 26-52 (223)
413 cd02020 CMPK Cytidine monophos 97.4 0.00015 3.4E-09 61.8 3.7 30 207-236 2-31 (147)
414 PRK05057 aroK shikimate kinase 97.4 0.00019 4.1E-09 63.5 4.4 34 204-237 4-37 (172)
415 PRK06547 hypothetical protein; 97.4 0.00018 3.8E-09 63.6 4.1 34 203-236 14-47 (172)
416 PRK10867 signal recognition pa 97.4 0.0017 3.6E-08 65.6 11.5 73 203-275 99-195 (433)
417 cd03115 SRP The signal recogni 97.4 0.0022 4.8E-08 56.5 11.1 34 206-239 2-38 (173)
418 PLN02674 adenylate kinase 97.4 0.00048 1E-08 64.1 7.0 39 203-243 30-68 (244)
419 COG1120 FepC ABC-type cobalami 97.4 0.0016 3.4E-08 60.9 10.3 27 202-228 26-52 (258)
420 cd03287 ABC_MSH3_euk MutS3 hom 97.4 0.0013 2.7E-08 60.6 9.6 24 203-226 30-53 (222)
421 smart00487 DEXDc DEAD-like hel 97.3 0.0014 3E-08 58.0 9.7 24 205-228 25-49 (201)
422 PRK13764 ATPase; Provisional 97.3 0.00029 6.2E-09 73.6 5.8 71 203-274 256-335 (602)
423 PRK13900 type IV secretion sys 97.3 0.00024 5.2E-09 69.4 4.8 72 203-274 159-246 (332)
424 PRK03731 aroL shikimate kinase 97.3 0.00022 4.8E-09 62.8 4.1 32 205-236 3-34 (171)
425 TIGR01425 SRP54_euk signal rec 97.3 0.0024 5.2E-08 64.2 11.9 73 203-275 99-194 (429)
426 CHL00195 ycf46 Ycf46; Provisio 97.3 0.016 3.4E-07 59.7 18.1 123 264-408 82-205 (489)
427 PF13245 AAA_19: Part of AAA d 97.3 0.00035 7.6E-09 52.8 4.6 33 205-237 11-50 (76)
428 PLN03186 DNA repair protein RA 97.3 0.00083 1.8E-08 65.8 8.4 117 200-317 119-271 (342)
429 PRK13946 shikimate kinase; Pro 97.3 0.00019 4.2E-09 64.1 3.7 33 204-236 10-42 (184)
430 cd03230 ABC_DR_subfamily_A Thi 97.3 0.0013 2.7E-08 58.2 8.8 103 202-318 24-154 (173)
431 PF08298 AAA_PrkA: PrkA AAA do 97.3 0.00058 1.3E-08 66.2 7.0 61 169-236 59-121 (358)
432 cd02027 APSK Adenosine 5'-phos 97.3 0.001 2.3E-08 57.3 7.9 35 207-241 2-39 (149)
433 TIGR03499 FlhF flagellar biosy 97.3 0.0009 2E-08 64.1 8.1 37 203-239 193-234 (282)
434 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0044 9.5E-08 53.8 11.5 23 206-228 4-26 (159)
435 PF10236 DAP3: Mitochondrial r 97.3 0.014 3E-07 56.6 16.3 47 335-382 258-308 (309)
436 PRK14528 adenylate kinase; Pro 97.3 0.00024 5.2E-09 63.7 3.8 34 206-241 3-36 (186)
437 COG1102 Cmk Cytidylate kinase 97.3 0.00024 5.2E-09 60.8 3.5 28 207-234 3-30 (179)
438 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0022 4.8E-08 56.0 9.8 25 203-227 20-44 (162)
439 TIGR02788 VirB11 P-type DNA tr 97.3 0.00031 6.7E-09 68.2 4.8 73 201-273 141-228 (308)
440 TIGR02533 type_II_gspE general 97.3 0.0025 5.3E-08 65.7 11.5 95 166-274 218-322 (486)
441 COG4608 AppF ABC-type oligopep 97.3 0.00052 1.1E-08 64.0 5.9 91 202-302 37-156 (268)
442 PRK13833 conjugal transfer pro 97.3 0.00076 1.6E-08 65.5 7.3 70 204-273 144-225 (323)
443 PRK08154 anaerobic benzoate ca 97.3 0.00074 1.6E-08 65.6 7.3 36 201-236 130-165 (309)
444 TIGR02655 circ_KaiC circadian 97.2 0.0028 6.1E-08 65.4 11.9 39 200-238 17-59 (484)
445 PRK02496 adk adenylate kinase; 97.2 0.00028 6E-09 63.0 3.8 30 206-235 3-32 (184)
446 TIGR02538 type_IV_pilB type IV 97.2 0.0022 4.8E-08 67.4 11.0 95 166-274 292-396 (564)
447 PRK10263 DNA translocase FtsK; 97.2 0.004 8.7E-08 69.4 13.2 74 265-351 1142-1217(1355)
448 COG2274 SunT ABC-type bacterio 97.2 0.0021 4.4E-08 69.0 10.8 28 201-228 496-523 (709)
449 PRK14527 adenylate kinase; Pro 97.2 0.00025 5.5E-09 63.7 3.4 37 203-241 5-41 (191)
450 PF00406 ADK: Adenylate kinase 97.2 0.00054 1.2E-08 59.1 5.3 35 209-245 1-35 (151)
451 PF05970 PIF1: PIF1-like helic 97.2 0.0017 3.7E-08 64.6 9.5 27 203-229 21-47 (364)
452 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00031 6.8E-09 62.6 3.9 35 206-242 5-39 (188)
453 PRK10436 hypothetical protein; 97.2 0.00093 2E-08 68.1 7.8 94 167-274 195-298 (462)
454 COG1936 Predicted nucleotide k 97.2 0.00024 5.3E-09 61.6 3.0 30 206-236 2-31 (180)
455 PF09848 DUF2075: Uncharacteri 97.2 0.0007 1.5E-08 67.0 6.7 23 206-228 3-25 (352)
456 TIGR00959 ffh signal recogniti 97.2 0.0034 7.3E-08 63.4 11.6 73 203-275 98-194 (428)
457 PRK13894 conjugal transfer ATP 97.2 0.00087 1.9E-08 65.1 7.1 71 203-273 147-229 (319)
458 KOG0479 DNA replication licens 97.2 0.0051 1.1E-07 62.7 12.5 42 372-413 603-644 (818)
459 TIGR01351 adk adenylate kinase 97.2 0.00031 6.6E-09 64.2 3.7 35 207-243 2-36 (210)
460 PRK09302 circadian clock prote 97.2 0.0035 7.6E-08 65.2 12.0 78 200-277 269-377 (509)
461 PRK09302 circadian clock prote 97.2 0.0037 7.9E-08 65.1 12.1 77 200-276 27-143 (509)
462 PF10443 RNA12: RNA12 protein; 97.2 0.013 2.8E-07 58.3 15.1 80 265-356 150-231 (431)
463 PF13238 AAA_18: AAA domain; P 97.2 0.00026 5.7E-09 58.7 2.9 22 207-228 1-22 (129)
464 PRK05703 flhF flagellar biosyn 97.2 0.0056 1.2E-07 61.9 13.0 37 203-239 220-261 (424)
465 PRK13851 type IV secretion sys 97.2 0.00033 7.1E-09 68.7 3.7 72 202-273 160-246 (344)
466 cd02022 DPCK Dephospho-coenzym 97.2 0.003 6.4E-08 56.2 9.6 35 207-244 2-36 (179)
467 PRK00279 adk adenylate kinase; 97.2 0.00037 8E-09 63.9 3.9 35 206-242 2-36 (215)
468 KOG0058 Peptide exporter, ABC 97.2 0.0012 2.5E-08 69.1 7.8 29 200-228 490-518 (716)
469 PF06414 Zeta_toxin: Zeta toxi 97.2 0.0013 2.8E-08 59.6 7.3 41 203-243 14-55 (199)
470 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0015 3.2E-08 61.4 7.9 34 207-240 2-38 (249)
471 PF05272 VirE: Virulence-assoc 97.1 0.00071 1.5E-08 61.1 5.4 111 200-340 48-169 (198)
472 PF08303 tRNA_lig_kinase: tRNA 97.1 0.0073 1.6E-07 52.2 11.2 133 210-358 5-147 (168)
473 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0027 5.8E-08 57.2 9.1 28 201-228 32-59 (194)
474 TIGR01526 nadR_NMN_Atrans nico 97.1 0.0013 2.8E-08 64.3 7.5 39 205-243 163-201 (325)
475 PHA02530 pseT polynucleotide k 97.1 0.0014 3E-08 63.3 7.6 35 206-241 4-38 (300)
476 PRK13541 cytochrome c biogenes 97.1 0.0061 1.3E-07 54.9 11.3 28 201-228 23-50 (195)
477 PF13481 AAA_25: AAA domain; P 97.1 0.00069 1.5E-08 60.8 5.1 75 204-278 32-156 (193)
478 cd02019 NK Nucleoside/nucleoti 97.1 0.00055 1.2E-08 50.7 3.6 22 207-228 2-23 (69)
479 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00052 1.1E-08 57.7 3.8 30 202-231 20-49 (133)
480 PRK12726 flagellar biosynthesi 97.1 0.0032 7E-08 62.0 9.8 61 175-238 180-243 (407)
481 PF02562 PhoH: PhoH-like prote 97.1 0.0015 3.2E-08 59.2 6.9 24 205-228 20-43 (205)
482 cd03232 ABC_PDR_domain2 The pl 97.1 0.0046 9.9E-08 55.6 10.1 26 202-227 31-56 (192)
483 cd03285 ABC_MSH2_euk MutS2 hom 97.1 0.0051 1.1E-07 56.7 10.6 25 203-227 29-53 (222)
484 PRK05541 adenylylsulfate kinas 97.1 0.00063 1.4E-08 60.2 4.4 35 203-237 6-43 (176)
485 cd03233 ABC_PDR_domain1 The pl 97.1 0.0035 7.7E-08 56.8 9.4 27 202-228 31-57 (202)
486 PRK08233 hypothetical protein; 97.1 0.00059 1.3E-08 60.5 4.2 33 205-237 4-37 (182)
487 TIGR01448 recD_rel helicase, p 97.1 0.0028 6.2E-08 68.4 10.1 71 205-275 339-428 (720)
488 COG0552 FtsY Signal recognitio 97.1 0.0073 1.6E-07 58.0 11.6 74 203-276 138-234 (340)
489 PF13086 AAA_11: AAA domain; P 97.1 0.00063 1.4E-08 62.4 4.5 23 206-228 19-41 (236)
490 PF13479 AAA_24: AAA domain 97.0 0.00094 2E-08 61.2 5.3 67 205-275 4-80 (213)
491 COG1117 PstB ABC-type phosphat 97.0 0.0044 9.5E-08 55.8 9.2 25 202-226 31-55 (253)
492 PRK08099 bifunctional DNA-bind 97.0 0.0014 3.1E-08 65.6 6.9 38 204-241 219-256 (399)
493 cd03278 ABC_SMC_barmotin Barmo 97.0 0.011 2.4E-07 53.4 12.1 22 206-227 24-45 (197)
494 PF05872 DUF853: Bacterial pro 97.0 0.0086 1.9E-07 59.7 11.9 86 265-364 257-344 (502)
495 cd03229 ABC_Class3 This class 97.0 0.0066 1.4E-07 53.8 10.3 104 202-318 24-160 (178)
496 PF01583 APS_kinase: Adenylyls 97.0 0.00068 1.5E-08 58.6 3.6 38 205-242 3-43 (156)
497 cd03217 ABC_FeS_Assembly ABC-t 97.0 0.0059 1.3E-07 55.3 9.8 27 201-227 23-49 (200)
498 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.001 2.3E-08 65.7 5.3 71 203-273 133-222 (358)
499 PRK04182 cytidylate kinase; Pr 97.0 0.00072 1.6E-08 59.8 3.7 29 206-234 2-30 (180)
500 COG2074 2-phosphoglycerate kin 97.0 0.018 3.8E-07 53.1 12.6 187 201-413 86-283 (299)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-77 Score=555.89 Aligned_cols=363 Identities=56% Similarity=0.893 Sum_probs=348.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCC
Q 014525 33 NEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTST 112 (423)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (423)
....-+..+..++..+...++.+|+.++++++.++.+|..++++.+.+++. .++++.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~---------------------~~iVks~~ 93 (406)
T COG1222 35 KEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDG---------------------RAIVKSST 93 (406)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCc---------------------eEEEEeCC
Confidence 333333344555666667788899999999999999999999999999976 69999999
Q ss_pred CceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccC
Q 014525 113 RQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTH 192 (423)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~ 192 (423)
++.+++++.+.++...++||++|.++.++..++..||...++.+..|++++.|.++|++|+|+++++++|++.+.+|+.+
T Consensus 94 g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~ 173 (406)
T COG1222 94 GPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKN 173 (406)
T ss_pred CCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCc
Q 014525 193 KERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEI 272 (423)
Q Consensus 193 ~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEi 272 (423)
|++|..+|+.||+|||||||||||||+||||+|++.++.|+++.+|+|+.+|+|++.+.++++|..|+.+.|||||||||
T Consensus 174 PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 174 PELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred HHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHH
Q 014525 273 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQI 352 (423)
Q Consensus 273 d~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~ 352 (423)
|.++.+|.++..++++++|+++++||+++++|+..+++.||++||+++.|||+|+||||||+.|+||+|+.+.|.+||++
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q 014525 353 HSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 353 ~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~ 416 (423)
|.+++.+..++|++.|+..+.|+||+||+++|.+|.+.|+++.+..||++||.+|+.++...+.
T Consensus 334 HtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 334 HTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999988554
No 2
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-73 Score=510.37 Aligned_cols=423 Identities=83% Similarity=1.234 Sum_probs=408.0
Q ss_pred CCccCCCCC-CCChhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeee
Q 014525 1 MATAMVEDP-NLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEI 79 (423)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (423)
|++.+.... +..++++-.+..+.+..+.+.+.+++.-++.+..++.-+.+.+++++....+++.--+..|..++.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~e~~~mste~i~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ 80 (424)
T KOG0652|consen 1 MATAMALEEEDALDQEILSMSTEEIISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLVSNVVEL 80 (424)
T ss_pred CCchhhccchhhhhhhhhhccHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHHhhHHHH
Confidence 566666666 5578899999999999999999999999999999999999999999999999998888999999999999
Q ss_pred ccCCCCcchhccCcccccccccCCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCccccccccc
Q 014525 80 LEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAM 159 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~ 159 (423)
+|..........++.+.+....+|.|.++++++++.+|+|+.+.+++++++|||+|++++++..+++.||.+++.+++.|
T Consensus 81 ld~~~~~~~e~sg~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaM 160 (424)
T KOG0652|consen 81 LDMDPNDDEEDSGANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAM 160 (424)
T ss_pred hcCCcccchhccCCcccccccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhccee
Confidence 98776555556689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch
Q 014525 160 EVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239 (423)
Q Consensus 160 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~ 239 (423)
++++.|+..|.||+|++.+++++.+++.+|+.+++.|..+|+.||+|+|+|||||||||++|++.|...+..|+.+.+++
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ 240 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
++..|+|++.+.++..|..++...|+||||||+|.++.+|++++..+++++|++++++|++++++.+...+.||++||+.
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCc
Q 014525 320 DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV 399 (423)
Q Consensus 320 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~I 399 (423)
+.|||+|+|+||+|+.|+||.|+.+.|..|++++.+++++..++++++||+.|++|+|++..++|-+|.+.|++++...|
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev 400 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEV 400 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhccccC
Q 014525 400 NHEDFNEGIIQVQAKKKASLNYYA 423 (423)
Q Consensus 400 t~~d~~~al~~~~~~~~~~~~~~~ 423 (423)
+.+||.+++..++.++..+++||+
T Consensus 401 ~heDfmegI~eVqakKka~l~yya 424 (424)
T KOG0652|consen 401 THEDFMEGILEVQAKKKASLNYYA 424 (424)
T ss_pred cHHHHHHHHHHHHHhhhhcccccC
Confidence 999999999999999999999996
No 3
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-64 Score=447.44 Aligned_cols=387 Identities=42% Similarity=0.758 Sum_probs=372.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCccc
Q 014525 16 LSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANI 95 (423)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (423)
++.+....+.-+.+.++.+++.++-+-+.++++...++.++-..++++.++++.|..++++.+.+|.+
T Consensus 22 ~~~~~~~dly~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqn------------ 89 (408)
T KOG0727|consen 22 LSGLDKEDLYVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQN------------ 89 (408)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhcc------------
Confidence 44456678888999999999999988899999999999999999999999999999999999988876
Q ss_pred ccccccCCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCc
Q 014525 96 DLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGL 175 (423)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~ 175 (423)
..++...++..+++.+.+.++.+.++|+..|.+.+.+...++.||++-++.+..+...+.|.++|.||+|+
T Consensus 90 ---------t~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggl 160 (408)
T KOG0727|consen 90 ---------TAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGL 160 (408)
T ss_pred ---------CceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccc
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHH
Q 014525 176 EKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDA 255 (423)
Q Consensus 176 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~ 255 (423)
+-+++++++++.+|+.+.++|...|+.||+|+|+|||||||||+||+++|+...+.|+++.+++|+.+|.|++.+.++.+
T Consensus 161 d~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdv 240 (408)
T KOG0727|consen 161 DVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDV 240 (408)
T ss_pred hhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceE
Q 014525 256 FQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRK 335 (423)
Q Consensus 256 ~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~ 335 (423)
|..++.+.|+||||||||.++.+|.+...++++++|++|.++|++|++++...|+.||++||+.+.+||+++||||+|+.
T Consensus 241 frlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrk 320 (408)
T KOG0727|consen 241 FRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 320 (408)
T ss_pred HHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 336 IEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 336 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
|+||.|+..+++-++.....++++..++|++.+..+.+..|+++|.++|++|.+.|.+.++-.|...||++|++.+..+.
T Consensus 321 iefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 321 IEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred ccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhccccC
Q 014525 416 KASLNYYA 423 (423)
Q Consensus 416 ~~~~~~~~ 423 (423)
....+||+
T Consensus 401 ~~~~~fyk 408 (408)
T KOG0727|consen 401 ETQFEFYK 408 (408)
T ss_pred ccchhccC
Confidence 88889986
No 4
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-63 Score=448.92 Aligned_cols=360 Identities=49% Similarity=0.826 Sum_probs=345.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCCCceE
Q 014525 37 VLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTI 116 (423)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (423)
.+++|+-+.++.++......++.+.+++.++..|..++++.+.+|+. +.++.++.+..+
T Consensus 73 LMEEEFI~NQe~~k~~e~~~ee~r~~vd~lRGtPmsvg~leEiidd~---------------------haivst~~g~e~ 131 (440)
T KOG0726|consen 73 LMEEEFIRNQERLKPQEEKQEEERSKVDDLRGTPMSVGTLEEIIDDN---------------------HAIVSTSVGSEY 131 (440)
T ss_pred HHHHHHHhhccccCCchhhhHHHHhHHHhhcCCccccccHHHHhcCC---------------------ceEEecccCchh
Confidence 45566766777777777788888899999999999999999999976 899999999999
Q ss_pred EEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHH
Q 014525 117 FLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERF 196 (423)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~ 196 (423)
|+++.++|+++.+.||+.|.++.....++..|....++.+..|+.++.|..+|.||+|+++++++|.+.+.+|+.+|++|
T Consensus 132 Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~Y 211 (440)
T KOG0726|consen 132 YVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYY 211 (440)
T ss_pred eeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 197 QKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 197 ~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
..+|++||+||+|||+||||||.||+|+|+...+.|+++-+++++.+|.|++.+.++++|..|..+.|+|+||||||.++
T Consensus 212 eemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiG 291 (440)
T KOG0726|consen 212 EEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIG 291 (440)
T ss_pred HHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK 356 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~ 356 (423)
.+|+++.+++.+++|++++++|+++++|++++++.||++||+.+.|||+|+||||+|+.|.||.|+...+..||.++..+
T Consensus 292 tKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~ 371 (440)
T KOG0726|consen 292 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR 371 (440)
T ss_pred cccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhh
Q 014525 357 MNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKA 417 (423)
Q Consensus 357 ~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~~ 417 (423)
+.+..+++++.+...-..+||+||.++|.+|.+.|++..+..+|++||.+|...+.-++..
T Consensus 372 Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~ 432 (440)
T KOG0726|consen 372 MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKE 432 (440)
T ss_pred cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999987754
No 5
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-60 Score=424.36 Aligned_cols=374 Identities=45% Similarity=0.738 Sum_probs=355.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCccccccccc
Q 014525 22 DDIVRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQR 101 (423)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
......+..++..+.+-.+-+.+|+.+.++++.++..+++++..++.+.+.++.+...++..
T Consensus 20 ~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~------------------ 81 (404)
T KOG0728|consen 20 QYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKK------------------ 81 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcc------------------
Confidence 34455666677777777788888999999999999999999999999999999999888765
Q ss_pred CCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHH
Q 014525 102 KGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQE 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~ 181 (423)
+++++......|.+.+...++...++|+.+|.+..++......||...++.+.-|-+++.|..+|+-++|++.++++
T Consensus 82 ---kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIke 158 (404)
T KOG0728|consen 82 ---KVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKE 158 (404)
T ss_pred ---eEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHH
Confidence 78888888888889999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHh
Q 014525 182 LVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE 261 (423)
Q Consensus 182 l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~ 261 (423)
|.+.+.+|..+|++|..+|+..|+|+|||||||||||.||+++|+...+.|+++++++++.+|+|++.+.++.+|-.++.
T Consensus 159 IkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmare 238 (404)
T KOG0728|consen 159 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE 238 (404)
T ss_pred HHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCC
Q 014525 262 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHP 341 (423)
Q Consensus 262 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 341 (423)
+.|+|||+||||.+++.|.++..+++.++|++++++|++++++....++.||++||+.+-|||+++||||+|+.|+||+|
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q 014525 342 TEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 342 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~ 416 (423)
+.+.|.+|++.+.+++++...+++..+|....|.||+++..+|.+|.++|+++.+..+|.+||+-|..++..+.+
T Consensus 319 ~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 319 NEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred CHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654
No 6
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.1e-57 Score=447.25 Aligned_cols=383 Identities=40% Similarity=0.744 Sum_probs=359.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCccccccc
Q 014525 20 TADDIVRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDS 99 (423)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (423)
+...+....+.++.++..++.+...++.+++.++.++..+++++++++.+|..++++.+.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 79 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSN---------------- 79 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCC----------------
Confidence 3445556666777888999999999999999999999999999999999999999999999865
Q ss_pred ccCCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHH
Q 014525 100 QRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQI 179 (423)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~ 179 (423)
+.+++.++++.+++.+.+.++.+.++||+.|.++..+...+..+|......+..+...+.|.++|++|+|++.++
T Consensus 80 -----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k 154 (398)
T PTZ00454 80 -----YGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQK 154 (398)
T ss_pred -----EEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHH
Confidence 788999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHH
Q 014525 180 QELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA 259 (423)
Q Consensus 180 ~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a 259 (423)
+.+.+.+..|+.+|+.|..+|+.+|+++|||||||||||++|+++|++++.+|+.+.++++..+|.|.++..++.+|..+
T Consensus 155 ~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A 234 (398)
T PTZ00454 155 QEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLA 234 (398)
T ss_pred HHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcC
Q 014525 260 KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFP 339 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~ 339 (423)
+.+.|+||||||+|.+++++.+...+.+..+++.+.+++..++++....+++||+|||+++.+||+++|+|||+..|+|+
T Consensus 235 ~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 99999999999999999888666666677889999999999999888889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhhhc
Q 014525 340 HPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 419 (423)
Q Consensus 340 ~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~~~~ 419 (423)
+|+.++|..|++.++.++++..++++..++..++||||+||.++|++|.+.|+++++..|+.+||.+|++++..+....+
T Consensus 315 ~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~~~ 394 (398)
T PTZ00454 315 LPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDRDY 394 (398)
T ss_pred CcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred cccC
Q 014525 420 NYYA 423 (423)
Q Consensus 420 ~~~~ 423 (423)
+||.
T Consensus 395 ~~~~ 398 (398)
T PTZ00454 395 DFYS 398 (398)
T ss_pred hccC
Confidence 9884
No 7
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-56 Score=396.81 Aligned_cols=364 Identities=43% Similarity=0.753 Sum_probs=322.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccc
Q 014525 33 NEIRVLKEELQRTNLELDSF------------KEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQ 100 (423)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
.++.+.+++++++.++++++ -..|+-.-.+..--...|.+++.+...++......
T Consensus 45 ~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wdl~~dkq~mq~eqplqvarctkii~~~~~d~------------- 111 (435)
T KOG0729|consen 45 AQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWDLAADKQRMQEEQPLQVARCTKIISGNSEDP------------- 111 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHHHhhhHHHhcccCCceeheeeeecCCCCCCc-------------
Confidence 34555555555555555443 33466554444333467888888888876542111
Q ss_pred cCCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHH
Q 014525 101 RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQ 180 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~ 180 (423)
.+++....-..+.+.....+.+..+.+|.+|++.+....+.-.||...++.+..|.+++.|.++|.|++|..+++.
T Consensus 112 ----~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqie 187 (435)
T KOG0729|consen 112 ----KYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIE 187 (435)
T ss_pred ----ceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHHH
Confidence 2344332222334455667888999999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHH
Q 014525 181 ELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAK 260 (423)
Q Consensus 181 ~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~ 260 (423)
.+++.+..|+.+|+.|-++|+.||+|+|+|||||||||.+|+|+|+..++.|+++-+|+++.+|+|++.+.++.+|+.++
T Consensus 188 klrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar 267 (435)
T KOG0729|consen 188 KLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR 267 (435)
T ss_pred HHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCC
Q 014525 261 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 340 (423)
....|||||||||.+++.|.+.+.++++++|++++++++++++++.++|+.|+++||+|+.|||+|+||||+|+.++|..
T Consensus 268 tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~l 347 (435)
T KOG0729|consen 268 TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 347 (435)
T ss_pred ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 341 PTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 341 p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
|+.+.|..|+++|.+.+.++.++-++.||..+...+|++|+.+|.+|.+.|++..+...|..||.+|++++..
T Consensus 348 pdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 348 PDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred CcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976
No 8
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=9.3e-54 Score=425.65 Aligned_cols=370 Identities=46% Similarity=0.768 Sum_probs=343.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCc
Q 014525 27 ASRLLDNEIRVLKEELQRTNLEL--DSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGK 104 (423)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (423)
++..++..++.|.-+.+.++.+. ..++.+...+++++++++.+|..++++.+.+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 117 (438)
T PTZ00361 59 RLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDEN--------------------- 117 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCC---------------------
Confidence 44555556666665666666554 4788899999999999999999999999999865
Q ss_pred EEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHH
Q 014525 105 CVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVE 184 (423)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~ 184 (423)
+.+++.+++..+++.+.+.++.+.++||+.|.++..+..++..+|...+..+..+++.+.|..+|++|+|++.+++.+.+
T Consensus 118 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e 197 (438)
T PTZ00361 118 HAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKE 197 (438)
T ss_pred eEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCC
Q 014525 185 AIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSP 264 (423)
Q Consensus 185 ~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~ 264 (423)
.+..++.++++|..+|+.+|+++|||||||||||++|+++|++++.+|+.+.++++...|.|.....++.+|..+..+.|
T Consensus 198 ~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P 277 (438)
T PTZ00361 198 AVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAP 277 (438)
T ss_pred HHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHH
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEE 344 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 344 (423)
+||||||||.++.++.+...+++.++++.+.+++..++++....++.||+|||+++.+|++++|+|||+..|+|++|+.+
T Consensus 278 ~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~ 357 (438)
T PTZ00361 278 SIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEK 357 (438)
T ss_pred cEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHH
Confidence 99999999999988876666677888999999999999888778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhh
Q 014525 345 ARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKA 417 (423)
Q Consensus 345 ~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~~ 417 (423)
+|.+||+.++.++.+..++++..++..+.|+||+||.++|++|++.|+++++..|+.+||.+|+.++...+..
T Consensus 358 ~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~ 430 (438)
T PTZ00361 358 TKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKG 430 (438)
T ss_pred HHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhccc
Confidence 9999999999999998899999999999999999999999999999999999999999999999999876554
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.9e-52 Score=415.89 Aligned_cols=376 Identities=50% Similarity=0.821 Sum_probs=348.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCccccccccc
Q 014525 22 DDIVRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQR 101 (423)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
..+..+...++.+.+.++.++.++..+.+.++.+++.++++++.++.++..++.+.+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------ 65 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDG------------------ 65 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCC------------------
Confidence 34555666677888999999999999999999999999999999999999999999999865
Q ss_pred CCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHH
Q 014525 102 KGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQE 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~ 181 (423)
..++..+.+..+.+.+...++...+++|+.|.++..+......+|......+..+.+...|.+.|++|+|++++++.
T Consensus 66 ---~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~ 142 (389)
T PRK03992 66 ---RVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIRE 142 (389)
T ss_pred ---eEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHH
Confidence 57777778777888888888899999999999999888888888888877778888999999999999999999999
Q ss_pred HHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHh
Q 014525 182 LVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE 261 (423)
Q Consensus 182 l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~ 261 (423)
+.+.+..|+.+++.|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++++...|.|..+..++.+|..++.
T Consensus 143 l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 222 (389)
T PRK03992 143 VREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELARE 222 (389)
T ss_pred HHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCC
Q 014525 262 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHP 341 (423)
Q Consensus 262 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 341 (423)
+.|+||||||+|.+++.+.+....++.++++.+.+++..++++...+++.||+|||.++.++++++|||||+..|+||+|
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 99999999999999988876666667888999999999999888888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhhh
Q 014525 342 TEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 418 (423)
Q Consensus 342 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~~~ 418 (423)
+.++|.+|++.++..+.+..++++..++..+.||+|+||.++|++|++.|++++...|+.+||.+|+..+.++....
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999876654
No 10
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=8.1e-50 Score=395.46 Aligned_cols=360 Identities=51% Similarity=0.838 Sum_probs=335.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEec
Q 014525 31 LDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKT 110 (423)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (423)
++.+.+.|+.++..++.+.+..+.+++.+++++++++.+|..++++.+.++.. ..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 62 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDN---------------------RVVVKS 62 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCC---------------------EEEEEe
Confidence 44567777777788888888888899999999999999999999999999865 677888
Q ss_pred CCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccc
Q 014525 111 STRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPM 190 (423)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l 190 (423)
+.+..++..+.+.+++..+++|+.+.++..+..+...+|......+..+.+...|.+.|++|+|++++++.+.+.+..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~ 142 (364)
T TIGR01242 63 STGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPL 142 (364)
T ss_pred CCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHh
Confidence 88888989999999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred cChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEEC
Q 014525 191 THKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFID 270 (423)
Q Consensus 191 ~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iD 270 (423)
.+++.|..+|+.+|+++||+||||||||++|+++|++++.+|+.+.++++...|.|.....++.+|..++...|+|||||
T Consensus 143 ~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iD 222 (364)
T TIGR01242 143 KHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFID 222 (364)
T ss_pred cCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHH
Q 014525 271 EIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 350 (423)
Q Consensus 271 Eid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il 350 (423)
|+|.++..+.+...+++++.+..+.+++..++++...+++.||+|||.++.++++++++|||+..++|++|+.++|.+|+
T Consensus 223 EiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il 302 (364)
T TIGR01242 223 EIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEIL 302 (364)
T ss_pred hhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHH
Confidence 99999988776666667888899999999998887778999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 351 QIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 351 ~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
+.++....+..++++..++..+.||+|+||.++|++|++.|+++++..|+.+||.+|+.++
T Consensus 303 ~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 303 KIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 9999988888788999999999999999999999999999999999999999999999876
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-51 Score=409.12 Aligned_cols=258 Identities=45% Similarity=0.788 Sum_probs=241.8
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+.|+++|+||+|+++.+.++.+.|.+|+.+|+.|.++|+.||+|||||||||||||++|+++|++.+.+|+.+.+++++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~ 321 (423)
++|+|++++.++.+|..|+..+|+||||||||.++..|.++.. ....+.+.++|.+|+|+....+|+||++||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 9999999999999999999999999999999999999964433 3345788999999999999999999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--CCCc
Q 014525 322 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD--ATEV 399 (423)
Q Consensus 322 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~--~~~I 399 (423)
||++++||||||..|++|+|+.+.|.+|++.+++++++..++|+..||..|+||||+||..+|++|+..|+++. ...|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 5789
Q ss_pred CHHHHHHHHHHHHHhhh-hhcccc
Q 014525 400 NHEDFNEGIIQVQAKKK-ASLNYY 422 (423)
Q Consensus 400 t~~d~~~al~~~~~~~~-~~~~~~ 422 (423)
+..||.+|++.+.++-. ..+.+|
T Consensus 663 ~~~hf~~al~~~r~s~~~~~~~~Y 686 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPSLTSELLEKY 686 (693)
T ss_pred cHHHHHHHHHhhcccCCHHHHHHH
Confidence 99999999999987554 333443
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-49 Score=388.98 Aligned_cols=259 Identities=40% Similarity=0.683 Sum_probs=240.7
Q ss_pred ccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 154 SRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
+..+...+...|.++|+||+|+++...++..+|..|+++|+.|+++|+..|.|||||||||||||.||+|+|++.+.+|+
T Consensus 495 PSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFi 574 (802)
T KOG0733|consen 495 PSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFI 574 (802)
T ss_pred cchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceE
Confidence 33456667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 014525 234 KLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 313 (423)
Q Consensus 234 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI 313 (423)
.|.+++++.+|+|++++.++++|..|+.+.||||||||+|.|.+.|+.+... ...+.+.|||.++++...+.+|+||
T Consensus 575 sVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~---~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 575 SVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS---VSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred eecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCch---hHHHHHHHHHHHhcccccccceEEE
Confidence 9999999999999999999999999999999999999999999999776533 4457889999999999999999999
Q ss_pred EEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhh--cCCCCCCCCHHHHHHhCC--CCcHHHHHHHHHHHHH
Q 014525 314 AATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR--KMNVHPDVNFEELARSTD--DFNGAQLKAVCVEAGM 389 (423)
Q Consensus 314 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~~~--g~s~~dl~~l~~~A~~ 389 (423)
++||+|+.+||+++||||||..+++++|+.++|..|++..++ +..++.++|+++||..+. ||+|+||..+|++|.+
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASI 731 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 788889999999998776 9999999999999999
Q ss_pred HHHHhC----------------CCCcCHHHHHHHHHHHHHhh
Q 014525 390 LALRRD----------------ATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 390 ~A~~~~----------------~~~It~~d~~~al~~~~~~~ 415 (423)
.|+++. ...+|+.||++|++++.++.
T Consensus 732 ~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 732 LALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 998872 12478889999999998743
No 13
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-49 Score=360.98 Aligned_cols=346 Identities=44% Similarity=0.731 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCCCceEEEEcccccCCCC
Q 014525 49 LDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDK 128 (423)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (423)
...+..++..-..-+..+++....++.+.+++++. .++++.+.++.+.+.+...++..+
T Consensus 33 ~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~---------------------~~iVK~s~Gpryvvg~~~~~D~~~ 91 (388)
T KOG0651|consen 33 SRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDE---------------------KFIVKASSGPRYVVGCRRSVDKEK 91 (388)
T ss_pred HHHHhhhcCcccchHHHhhhcCchhHHHHhhcccc---------------------ceEeecCCCCcEEEEcccccchhh
Confidence 33444444444444555666666666666666543 789999999999999999999999
Q ss_pred CCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCce
Q 014525 129 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVL 208 (423)
Q Consensus 129 ~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vL 208 (423)
++.|.++.++-.+..+...||...+ .+..+........+|+.++|.-.++.++++.+..|+.+|++|.+.|++||.+++
T Consensus 92 i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~l 170 (388)
T KOG0651|consen 92 IARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLL 170 (388)
T ss_pred hccCceeeeeeeeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeE
Confidence 9999999999999999999998887 677777778888999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcH
Q 014525 209 LYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 288 (423)
Q Consensus 209 l~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~ 288 (423)
||||||||||++|+++|..+++.|+.+..+++.++|+|++.+.+++.|..|+.+.|||||+||||.+++.+.+..+.++.
T Consensus 171 l~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dr 250 (388)
T KOG0651|consen 171 LYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDR 250 (388)
T ss_pred EeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 014525 289 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEEL 368 (423)
Q Consensus 289 ~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~l 368 (423)
++|++|.++++++++++.-+.|.+|+|||+|+.|+|+|+||||+++.+++|.|+...|..|++.+...+.....++.+.+
T Consensus 251 eiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eai 330 (388)
T KOG0651|consen 251 EIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAI 330 (388)
T ss_pred HHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q 014525 369 ARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~ 416 (423)
.+..+||+|+|+++.|++|.+.|+......+-++||..++.++...+.
T Consensus 331 vK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kk 378 (388)
T KOG0651|consen 331 LKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAKK 378 (388)
T ss_pred HHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887554
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-47 Score=366.38 Aligned_cols=244 Identities=39% Similarity=0.634 Sum_probs=232.2
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 245 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~ 245 (423)
++.|+|+-|.|++++++.+.+ .+++.|+.|.++|-+-|+||||+||||||||+||||+|.+.+.||++..+++|-+.|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 578999999999999999955 5699999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChh
Q 014525 246 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPA 325 (423)
Q Consensus 246 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~ 325 (423)
|.+.+.++.+|..|+.+.||||||||||.++++|..++.. ....++.|+|.+|+++....+|+||++||.|+.||++
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~---y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH---YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH---HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 9999999999999999999999999999999998654322 5667999999999999999999999999999999999
Q ss_pred hhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 326 LMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 326 l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
|.||||||++|.+|.||...|.+|++.|+.++.++.++|+..||+-|.||+|+||.+++++|+..|...+...|||.|++
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE 535 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLE 535 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 014525 406 EGIIQVQA 413 (423)
Q Consensus 406 ~al~~~~~ 413 (423)
.|-+++.-
T Consensus 536 ~akDrIlM 543 (752)
T KOG0734|consen 536 FAKDRILM 543 (752)
T ss_pred hhhhheee
Confidence 99988763
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-46 Score=377.58 Aligned_cols=263 Identities=38% Similarity=0.713 Sum_probs=238.3
Q ss_pred ccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 158 AMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 158 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
.....+.|++.|+||+|+++++.+|.+.|..|+.||++|.. |+++..|+|||||||||||.+|||+|.++...|+.|.+
T Consensus 660 aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKG 738 (953)
T KOG0736|consen 660 AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKG 738 (953)
T ss_pred hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecC
Confidence 34456679999999999999999999999999999999977 78888899999999999999999999999999999999
Q ss_pred chhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC--CCCCeEEEEE
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--SDDRIKVIAA 315 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~v~vI~t 315 (423)
++++..|+|+++..++.+|+.|+...||||||||+|.++|+|+.++.++. -+.+++.|+|.++++.. +...++||++
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 99999999999999999999999999999999999999999987665442 45678899999999987 4558999999
Q ss_pred cCCCCCCChhhhcCCCcceEEEcCCCCH-HHHHHHHHHHhhcCCCCCCCCHHHHHHhCC-CCcHHHHHHHHHHHHHHHHH
Q 014525 316 TNRADILDPALMRSGRLDRKIEFPHPTE-EARARILQIHSRKMNVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 316 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~~~~~~~~~~~l~~la~~~~-g~s~~dl~~l~~~A~~~A~~ 393 (423)
||+|+-|||+|+||||||..+++.++.. +.+..+++...+++.++.++|+.++|+.+. .++|+|+.++|..|.+.|++
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Aik 897 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIK 897 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987754 778899999999999999999999999875 69999999999999999998
Q ss_pred hC-----------------CCCcCHHHHHHHHHHHHHhhh-hhcccc
Q 014525 394 RD-----------------ATEVNHEDFNEGIIQVQAKKK-ASLNYY 422 (423)
Q Consensus 394 ~~-----------------~~~It~~d~~~al~~~~~~~~-~~~~~~ 422 (423)
|. .-.|+++||.++.+++.++.+ +.+++|
T Consensus 898 R~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~y 944 (953)
T KOG0736|consen 898 RTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRY 944 (953)
T ss_pred HHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHH
Confidence 82 235999999999999999776 455554
No 16
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=8.3e-43 Score=351.50 Aligned_cols=379 Identities=28% Similarity=0.480 Sum_probs=301.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeee-ccCCCCcchhc--------cCccccccc
Q 014525 29 RLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEI-LEMNPEDEAEE--------DGANIDLDS 99 (423)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~ 99 (423)
..+..++..|.+++.+|.+.+++.+.++..++++++++..+|..++++... .+. ....=+. -...++...
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~~~~ 82 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDD-ETAEVFTAGRRMRVTVSPNVNAAE 82 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCC-CeEEEEeCCceEEEEeCCCCCHHH
Confidence 346678888899999999999999999999999999999999999999876 321 1111001 111222222
Q ss_pred ccCC--------------------------------cEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeec
Q 014525 100 QRKG--------------------------------KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDT 147 (423)
Q Consensus 100 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~ 147 (423)
..+| ...++..+.+...++.+...+..+.+++|+.+.++..+.+.+..
T Consensus 83 l~~g~~v~l~e~~~~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (512)
T TIGR03689 83 LVPGQTVRLNEALQVVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEA 162 (512)
T ss_pred CCCCCEEEECCcceeeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhc
Confidence 2222 34455556666777778888888889999999999888887777
Q ss_pred CCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 148 LPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+|... +..+...+.|.++|++|+|++.+++.+++.+..|+.++++|..+|+.+|+++|||||||||||++|+++|++
T Consensus 163 ~~~~~---~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 163 VPKAE---VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHhH---HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 77532 445556778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCc----------EEEEccchhhhhhhhchHHHHHHHHHHHHhC----CCeEEEECCchhhhccCCCCCCCCcHHHHHH
Q 014525 228 TNAT----------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 293 (423)
Q Consensus 228 l~~~----------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 293 (423)
++.+ |+.+..+++..+|.|+.+..++.+|..++.. .|+||||||+|.++.+|..+... + .-...
T Consensus 240 L~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~-d-~e~~i 317 (512)
T TIGR03689 240 LAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS-D-VETTV 317 (512)
T ss_pred hccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc-h-HHHHH
Confidence 8543 6677788899999999999999999988763 68999999999999877433221 1 12345
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc-CCCC---------CCC
Q 014525 294 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK-MNVH---------PDV 363 (423)
Q Consensus 294 l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~-~~~~---------~~~ 363 (423)
+.+++..++++...++++||+|||+++.|||+++||||||.+|+|++|+.++|.+|++.++.. +.+. ...
T Consensus 318 l~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a 397 (512)
T TIGR03689 318 VPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREA 397 (512)
T ss_pred HHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHH
Confidence 678888899888878999999999999999999999999999999999999999999998764 3331 111
Q ss_pred CHHHHHHh-----------------------------CCCCcHHHHHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHH
Q 014525 364 NFEELARS-----------------------------TDDFNGAQLKAVCVEAGMLALRR----DATEVNHEDFNEGIIQ 410 (423)
Q Consensus 364 ~l~~la~~-----------------------------~~g~s~~dl~~l~~~A~~~A~~~----~~~~It~~d~~~al~~ 410 (423)
++..++.. ++.+||+.|.++|..|...|+.+ +...|+.+|+..|+..
T Consensus 398 ~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 398 TAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 22223221 45688999999999999999876 3468999999999987
Q ss_pred HHH
Q 014525 411 VQA 413 (423)
Q Consensus 411 ~~~ 413 (423)
-..
T Consensus 478 e~~ 480 (512)
T TIGR03689 478 EFR 480 (512)
T ss_pred hhc
Confidence 544
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-44 Score=336.00 Aligned_cols=251 Identities=39% Similarity=0.633 Sum_probs=227.0
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
+...|.+.|+||.|+.++++-|.++|.+|+..|+.|+.+. .|-++||++||||||||+||+|+|.+++..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 3455789999999999999999999999999999998754 677999999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-C---eEEEEEc
Q 014525 241 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDD-R---IKVIAAT 316 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~-~---v~vI~tt 316 (423)
.++|-|++++.++-+|+.|+...|++|||||||.|++.|.++. .|..-.+.-.+||.+|++..... + |+|+++|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~--EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS--EHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc--chhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 9999999999999999999999999999999999999986552 34444455567777777764432 3 8899999
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-
Q 014525 317 NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD- 395 (423)
Q Consensus 317 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~- 395 (423)
|.|+.||.+|+| ||...|++|+|+.+.|..+++..++......+++++.|+..++||||+||.++|++|.+.+.+|.
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ----------------CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 ----------------ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 ----------------~~~It~~d~~~al~~~~~~~~ 416 (423)
...|++.||++|++++.++.+
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 145999999999999988665
No 18
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-44 Score=351.13 Aligned_cols=224 Identities=47% Similarity=0.801 Sum_probs=210.7
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 245 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~ 245 (423)
.++|.+|+|.+..+.++.+.+.. +.+|+.|..+|+.||+|||||||||||||+||+|+|++++.||+.++.+++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 67999999999999999998877 99999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHH-HHHHHHHHHhhcCCCCC----CCeEEEEEcCCCC
Q 014525 246 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREV-QRTMLELLNQLDGFSSD----DRIKVIAATNRAD 320 (423)
Q Consensus 246 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~-~~~l~~ll~~~~~~~~~----~~v~vI~ttn~~~ 320 (423)
|+++..++.+|+.|+...|||+||||||.++++|.. +..++ ++++.|||..|++.... ..|+||++||+|+
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999855 23343 45677888888876544 4799999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 014525 321 ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 321 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~ 394 (423)
.|||+|+|+|||++.|.+..|+..+|.+||+..++++.++.++++..||..|.||.|+||.++|.+|+..|++|
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-43 Score=358.57 Aligned_cols=249 Identities=44% Similarity=0.748 Sum_probs=233.9
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
...+.|.|+.|.++++++|.+.+ .++.+|+.|.++|.+.|+|+||+||||||||.||+|+|.+.+.||+.+++++|++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 34589999999999999999965 56999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCC-CCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD-SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
++|.....++.+|..++.+.|+||||||||.++..|.+ ....++.+-..+|.|+|-++|++....+++|+++||+++.|
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 99999999999999999999999999999999999853 23345667778999999999999999999999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNH 401 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~ 401 (423)
|++|+||||||+.|.++.|+..+|.+|++.|++...+. .++++..+|..|.||+|+||.++|.+|+..|.++....|+.
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~ 543 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGT 543 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccch
Confidence 99999999999999999999999999999999999885 77889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014525 402 EDFNEGIIQVQA 413 (423)
Q Consensus 402 ~d~~~al~~~~~ 413 (423)
.||..|++++..
T Consensus 544 ~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 544 KDLEYAIERVIA 555 (774)
T ss_pred hhHHHHHHHHhc
Confidence 999999997665
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=303.93 Aligned_cols=242 Identities=34% Similarity=0.587 Sum_probs=221.9
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
.+..+|+|++|++++++.++- +...+.+|+.|..+ .|++||||||||||||++|+++|+++..|++.++..++++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHH-HHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 466899999999999999876 45568889998876 47899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
++|+..+.++++++.|+...|||+||||+|.++-.|..+...+ ++...+..+|.+++++....+++.|++||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765443333 45677888999999999889999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHhCCCCcCHH
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKA-VCVEAGMLALRRDATEVNHE 402 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~-l~~~A~~~A~~~~~~~It~~ 402 (423)
+++++ ||...|+|.+|+.++|.+|++.+.+++++.-+.++..++..+.|+||+||.. ++..|...|+..++..|+.+
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~e 346 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERE 346 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHH
Confidence 99999 9999999999999999999999999999998999999999999999999986 88999999999999999999
Q ss_pred HHHHHHHHHHH
Q 014525 403 DFNEGIIQVQA 413 (423)
Q Consensus 403 d~~~al~~~~~ 413 (423)
||..|+++-..
T Consensus 347 die~al~k~r~ 357 (368)
T COG1223 347 DIEKALKKERK 357 (368)
T ss_pred HHHHHHHhhcc
Confidence 99999998443
No 21
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-41 Score=341.80 Aligned_cols=249 Identities=43% Similarity=0.739 Sum_probs=239.2
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
...+.|.|+.|.+++++++.+.+ .++..|..|..+|.+-|+|+||+||||||||+||+++|.+.+.||+.+++|+|++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 45689999999999999999954 67999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
++|-+...++.+|..++.+.||||||||||.++..|..+..+++.+...++.|+|.+|+++.....++||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999977766778888899999999999999888999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 403 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d 403 (423)
|+|+||||||+.|.++.||...|.+|++.|.++..+..++++..+|+.|.||+|+|+.+++++|+..|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 014525 404 FNEGIIQVQA 413 (423)
Q Consensus 404 ~~~al~~~~~ 413 (423)
|.+|..++..
T Consensus 383 i~ea~drv~~ 392 (596)
T COG0465 383 IEEAIDRVIA 392 (596)
T ss_pred hHHHHHHHhc
Confidence 9999999986
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-41 Score=308.53 Aligned_cols=233 Identities=37% Similarity=0.675 Sum_probs=209.8
Q ss_pred ccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 156 VKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
+...-+.+.|.+.|+||.|++.+++.+.+++.+|+..|++|..- ..|-+++|||||||||||+||+|+|.+.+..|+.|
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 44445567899999999999999999999999999999999763 35778999999999999999999999999999999
Q ss_pred ccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-CCeEEEE
Q 014525 236 AGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIA 314 (423)
Q Consensus 236 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~v~vI~ 314 (423)
+.++++++|.|++++.++++|+.++.+.|+||||||||.+++.|.+++..+. .++-.++|-+|+++... .+++|++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseas---RRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEAS---RRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHH---HHHHHHHHHhhhccccCCCceEEEe
Confidence 9999999999999999999999999999999999999999999877655443 34556788888887554 4799999
Q ss_pred EcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014525 315 ATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 315 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
+||.|+.||.+++| ||+..|++|+|....|..+++.++...+.. .+.|+.+|+..|+||||+||.-+++.|.+..++
T Consensus 275 ATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred cCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHH
Confidence 99999999999999 999999999999999999999999876654 567899999999999999999999999998877
Q ss_pred h
Q 014525 394 R 394 (423)
Q Consensus 394 ~ 394 (423)
+
T Consensus 353 k 353 (439)
T KOG0739|consen 353 K 353 (439)
T ss_pred H
Confidence 6
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.1e-39 Score=346.09 Aligned_cols=252 Identities=46% Similarity=0.784 Sum_probs=231.8
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
+.|...|++|+|++..++.+.+.+..++.+++.|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
+|+|+++..++.+|..++...|+||||||+|.+++.|..... .....+.+.+++..++++....+++||+|||+|+.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999988753322 223456778889999988888899999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------- 395 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~------- 395 (423)
|++++|||||+.++++|+|+.++|.+||+.+.++..+..++++..||..+.||||+||.++|++|++.|+++.
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~ 683 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKE 683 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999999999999889999999999999999999999999999998852
Q ss_pred -----------CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 -----------ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 -----------~~~It~~d~~~al~~~~~~~~ 416 (423)
...|+++||.+|+.++.++-.
T Consensus 684 ~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 684 KLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred hhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 136999999999999987544
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-39 Score=322.66 Aligned_cols=232 Identities=39% Similarity=0.644 Sum_probs=216.5
Q ss_pred ccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch
Q 014525 160 EVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239 (423)
Q Consensus 160 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~ 239 (423)
.........|++|+|+.++++.+.+.+.+|.+||.+|...+++-+.|+|||||||||||+||.++|...+..|+.+.+++
T Consensus 657 k~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE 736 (952)
T KOG0735|consen 657 KLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE 736 (952)
T ss_pred cccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH
Confidence 33333447899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
++.+|+|.++..++.+|+.|+...||||||||+|.++|+|+-...+- ..+.+.|+|.+++|...-.++.|+++|.+|
T Consensus 737 lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 737 LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 99999999999999999999999999999999999999996443332 235788999999999988999999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 014525 320 DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 320 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~ 394 (423)
+.+||+|+||||+|..++-|.|+..+|.+|++.....+....++|++.+|..|+||+|+||..++..|.+.|..+
T Consensus 814 dliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 814 DLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=333.02 Aligned_cols=249 Identities=45% Similarity=0.730 Sum_probs=232.0
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
..+.+.|.+++|++..++.+.+.+..++.+++.|...|+.+++++|||||||||||++|+++|.+++.+|+.+.++++++
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
+|+|++++.++.+|..|+...|+||||||+|.+++.|.++..+. ..+.+.+++..+++.....+++||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~---~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS---GRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH---HHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999886554332 246888899999998888999999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCC--CCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCCc
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV--HPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEV 399 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~--~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~-~~~I 399 (423)
|++++|+|||+..+++|+|+.++|.+|++.++..... ..++++..++..+.||+|+||..+|++|.+.++++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999996554 578899999999999999999999999999999998 7889
Q ss_pred CHHHHHHHHHHHHHh
Q 014525 400 NHEDFNEGIIQVQAK 414 (423)
Q Consensus 400 t~~d~~~al~~~~~~ 414 (423)
|.+||.+|++.+.++
T Consensus 472 ~~~~~~~a~~~~~p~ 486 (494)
T COG0464 472 TLDDFLDALKKIKPS 486 (494)
T ss_pred cHHHHHHHHHhcCCC
Confidence 999999999996554
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1e-38 Score=328.01 Aligned_cols=250 Identities=44% Similarity=0.780 Sum_probs=231.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
+.|..+|++|+|++.+++.+.+.+.. +.+++.|...|..+|+++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35678999999999999999987664 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
.+.|.....++.+|..++...|+||||||||.+++++.......+.+....+.+++..++++....+++||+|||+++.+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998876544444566778888999999988888899999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 402 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~ 402 (423)
||+++|||||+..+++++|+.++|.+|++.++.......+.++..++..+.||+++||.++|++|+..|.+++...|+.+
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~ 286 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMN 286 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999999988877788999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHH
Q 014525 403 DFNEGIIQVQA 413 (423)
Q Consensus 403 d~~~al~~~~~ 413 (423)
||..|+..+..
T Consensus 287 ~l~~a~~~~~~ 297 (495)
T TIGR01241 287 DIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHhc
Confidence 99999998853
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-39 Score=301.18 Aligned_cols=243 Identities=38% Similarity=0.658 Sum_probs=219.5
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhC-CCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLG-VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 245 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~ 245 (423)
++|+||+|++..++.+.+.+..|+.+|++|...+ +.|++|+|||||||||||++|+++|++.+++|+-|.++.+.++|+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 7899999999999999999999999999997544 478899999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC--eEEEEEcCCCCCCC
Q 014525 246 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR--IKVIAATNRADILD 323 (423)
Q Consensus 246 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~--v~vI~ttn~~~~l~ 323 (423)
|+.++.++.+|..+..-.|+||||||+|.+...|.. ..|......-.+|+..-+++.+..+ |+|+++||+|..+|
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlD 245 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLD 245 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc---chHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHH
Confidence 999999999999999999999999999999988832 2344444555678877788777664 99999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----C----
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR----D---- 395 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~----~---- 395 (423)
.+++| |++..++++.|+..+|.+|++..++.-.+++++|+..+|..|.||||+||..+|+.|+...++. .
T Consensus 246 eAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~ 323 (386)
T KOG0737|consen 246 EAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLL 323 (386)
T ss_pred HHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccch
Confidence 99999 9999999999999999999999999999999999999999999999999999999999887654 1
Q ss_pred --------------------CCCcCHHHHHHHHHHHHHh
Q 014525 396 --------------------ATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 396 --------------------~~~It~~d~~~al~~~~~~ 414 (423)
...++++||..|..++.++
T Consensus 324 d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 324 DLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred hhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 2568899999999966553
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.8e-38 Score=315.30 Aligned_cols=242 Identities=26% Similarity=0.436 Sum_probs=210.1
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+..+|++|+|++..++.+.+.... ......++|+.+|+|+|||||||||||++|+++|++++.+|+.++++.+.++|
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999999876532 23355678999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCh
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 324 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~ 324 (423)
+|+++..++.+|..++...|+||||||||.++.++..... +....+.+..++..++. ...+++||+|||.++.+|+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999999875433221 22334556666666653 3457999999999999999
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 014525 325 ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 402 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~--~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~ 402 (423)
+++|+||||.+++++.|+.++|.+|++.++.+.... .+.++..|+..|.||||+||.++|.+|...|..++ ..+|.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 999999999999999999999999999999886543 47789999999999999999999999999998766 468999
Q ss_pred HHHHHHHHHHHh
Q 014525 403 DFNEGIIQVQAK 414 (423)
Q Consensus 403 d~~~al~~~~~~ 414 (423)
||..|++.+.|.
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999999884
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.4e-37 Score=323.33 Aligned_cols=248 Identities=44% Similarity=0.745 Sum_probs=229.4
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+..+|++|+|.+++++.+.+.+ ..+..++.|..+|..+|+++||+||||||||++|+++|++++.||+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 4579999999999999998865 458889999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCh
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 324 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~ 324 (423)
.|.....++.+|..++.+.|+||||||+|.++..|..+....+.+.+..+.+++..++++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888889999999999999999999999999887655555667778899999999998888889999999999999999
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 014525 325 ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 404 (423)
+++|||||+..+.|++|+.++|.+|++.+++......++++..++..+.||+|+||.++|++|+..|.+++...||.+||
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl 416 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999998777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 014525 405 NEGIIQVQA 413 (423)
Q Consensus 405 ~~al~~~~~ 413 (423)
..|+.++..
T Consensus 417 ~~Ai~rv~~ 425 (638)
T CHL00176 417 DTAIDRVIA 425 (638)
T ss_pred HHHHHHHHh
Confidence 999998843
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=5.6e-35 Score=307.12 Aligned_cols=247 Identities=41% Similarity=0.720 Sum_probs=228.2
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 245 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~ 245 (423)
...|.++.|.+..+..+.+.+.. +..+..+..++...|++++|+||||||||++|++++.+++.+|+.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999999987765 56677888888888899999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChh
Q 014525 246 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPA 325 (423)
Q Consensus 246 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~ 325 (423)
|.....++.+|..++...|+||||||+|.++..|..+..+++.+....+.++|..++++....+++||+|||+|+.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999998886655555666777889999999998888899999999999999999
Q ss_pred hhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 326 LMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 326 l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
++|||||++.+.++.|+.++|.+|++.++...++..++++..++..+.||||+||.++|++|+..|.++++..|+..||.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 014525 406 EGIIQVQA 413 (423)
Q Consensus 406 ~al~~~~~ 413 (423)
+|+..+..
T Consensus 387 ~a~~~v~~ 394 (644)
T PRK10733 387 KAKDKIMM 394 (644)
T ss_pred HHHHHHhc
Confidence 99987754
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=7.3e-35 Score=317.93 Aligned_cols=213 Identities=21% Similarity=0.300 Sum_probs=181.6
Q ss_pred hhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh----------------------------
Q 014525 193 KERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF---------------------------- 244 (423)
Q Consensus 193 ~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~---------------------------- 244 (423)
.....++|+.||+|+||+||||||||+||+|+|.+++.||+.++++++++.+
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3455788999999999999999999999999999999999999999998654
Q ss_pred -------------hhchHH--HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC---C
Q 014525 245 -------------IGDGAK--LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS---S 306 (423)
Q Consensus 245 -------------~g~~~~--~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~---~ 306 (423)
++.+.+ .++.+|+.|+.++||||||||||.++.+. .. ...+.++++.+++.. +
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~--~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SN--YLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cc--eehHHHHHHHhccccccCC
Confidence 112222 37889999999999999999999998652 11 124667777777653 4
Q ss_pred CCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHH--hhcCCCCC-CCCHHHHHHhCCCCcHHHHHHH
Q 014525 307 DDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIH--SRKMNVHP-DVNFEELARSTDDFNGAQLKAV 383 (423)
Q Consensus 307 ~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~--~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l 383 (423)
..+|+||||||+|+.+||||+||||||..|.++.|+..+|.+++..+ .+++.+.. .+++..+|..|.|||||||.++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 56899999999999999999999999999999999999999988764 34555553 3679999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 384 CVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 384 ~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
|++|+..|+++++..|+.+++..|+.++...
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988764
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-34 Score=286.08 Aligned_cols=242 Identities=42% Similarity=0.731 Sum_probs=223.3
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+... .+++|...++..+++.+..|+.++..+...|+++|+++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4455 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCC-CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 245 IGDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
.|+++..++..|+.+..+. |++|||||+|.++++|..... ...+...+++..+++....++++||++||+|+.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999998 999999999999998854432 23355667777777777788999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 403 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d 403 (423)
++++| ||||..+.+..|+..+|.+|++.++..++...++++..+|..++||+|+|+.++|.+|.+.+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999888 8899
Q ss_pred HHHHHHHHHHhhhh
Q 014525 404 FNEGIIQVQAKKKA 417 (423)
Q Consensus 404 ~~~al~~~~~~~~~ 417 (423)
|..|...++++..+
T Consensus 409 ~~~A~~~i~psa~R 422 (693)
T KOG0730|consen 409 FQEALMGIRPSALR 422 (693)
T ss_pred HHHHHhcCCchhhh
Confidence 99999888876654
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-34 Score=301.26 Aligned_cols=250 Identities=39% Similarity=0.665 Sum_probs=219.1
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccch
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQ 239 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~ 239 (423)
..+.|++|+|++..+..+.+.+..|+.||+.|..+++.||+++||+||||||||..|+++|..+ ...|+.-.+++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3579999999999999999999999999999999999999999999999999999999999988 35677778899
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
..++|+|+.++.++.+|+.|+.+.|+|||+||||.|++.|+.....-|.. +...+|..|++..+++.++||++||++
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~S---IvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHAS---IVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhh---HHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999885543333333 444566667788889999999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC--
Q 014525 320 DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA-- 396 (423)
Q Consensus 320 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~-- 396 (423)
+.++|+++|||||++.++||.|+.+.|.+|+.++.++.... ...-+..||..+.||.|+||+.+|.+|++.++++.-
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 99999999999999999999999999999999999877633 122368899999999999999999999999998842
Q ss_pred --------------CCcCHHHHHHHHHHHHHhhhh
Q 014525 397 --------------TEVNHEDFNEGIIQVQAKKKA 417 (423)
Q Consensus 397 --------------~~It~~d~~~al~~~~~~~~~ 417 (423)
..|...||..|+.+..+....
T Consensus 497 ~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 237888899888887765443
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-32 Score=295.78 Aligned_cols=249 Identities=45% Similarity=0.762 Sum_probs=221.7
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
.+..+|++|+|++.+++.+.+.+..++.+|+.|..+|+.+++++|||||||||||++|+++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
+.|..+..++.+|..+....|+||||||+|.+++++.......+. ..+.+++..+++....+.++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~---~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK---RVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHH---HHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999999876433222222 34445555556666667899999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-------- 395 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~-------- 395 (423)
++++++|||+..+.++.|+.++|.+|++.+.+.+.+..+.++..++..+.||+++++..+|+.|++.++++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999998888888899999999999999999999999999887652
Q ss_pred -----------CCCcCHHHHHHHHHHHHHhh
Q 014525 396 -----------ATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 396 -----------~~~It~~d~~~al~~~~~~~ 415 (423)
...++.+||..|+..+.++.
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 12588999999999887754
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=274.56 Aligned_cols=250 Identities=36% Similarity=0.600 Sum_probs=213.3
Q ss_pred CCCCccc--ccCchHHHHHHHH-HHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-cEEEEccchh
Q 014525 165 PTEDYND--IGGLEKQIQELVE-AIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-TFLKLAGPQL 240 (423)
Q Consensus 165 ~~~~~~~--i~G~~~~~~~l~~-~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-~~i~v~~~~l 240 (423)
|.-.|++ |+|++.....|.+ +...-.--|+..+++|+++-+|+|||||||||||.+||.|..-+++ +--.||++++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 4445664 6899998888766 4555566688899999999999999999999999999999999964 3456899999
Q ss_pred hhhhhhchHHHHHHHHHHHHh--------CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 241 VQMFIGDGAKLVRDAFQLAKE--------KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~~--------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
+++|+|+++..++.+|..|.. ..--||+|||||.++..|.+...+ ..-....+.|+|..+++...-+|++|
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNNILV 372 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNNILV 372 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhcEEE
Confidence 999999999999999998864 123599999999999988654321 11122467889999999999999999
Q ss_pred EEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCC----CCCCCCHHHHHHhCCCCcHHHHHHHHHHHH
Q 014525 313 IAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMN----VHPDVNFEELARSTDDFNGAQLKAVCVEAG 388 (423)
Q Consensus 313 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~~~~~l~~la~~~~g~s~~dl~~l~~~A~ 388 (423)
|+-||+++.+|.+|+|||||...+++.+||+..|.+|+++|..++. ++.++|+.+||..|..|||++|+.+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987753 357899999999999999999999999999
Q ss_pred HHHHHhC---------------CCCcCHHHHHHHHHHHHHhh
Q 014525 389 MLALRRD---------------ATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 389 ~~A~~~~---------------~~~It~~d~~~al~~~~~~~ 415 (423)
..|..|. .-.||++||..|+..+.|..
T Consensus 453 S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred HHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 9998773 13599999999999998844
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-33 Score=269.68 Aligned_cols=250 Identities=36% Similarity=0.604 Sum_probs=217.2
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
....+.+.|+++.|++.+++.+.+.+.+|+..++.|..+. .|++++||+||||+|||+|++++|.++++.|+.++.+.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3445678999999999999999999999999999998765 567899999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC--CCCCeEEEEEcCC
Q 014525 241 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--SDDRIKVIAATNR 318 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~v~vI~ttn~ 318 (423)
.++|+|++++.++.+|..|+...|+|+||||+|.++.+|.+.....++ +...+++.+..+.. ..++|+||+|||.
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~sr---r~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSR---RLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccch---hhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 999999999999999999999999999999999999999655444433 45566665555443 3458999999999
Q ss_pred CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--
Q 014525 319 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-- 395 (423)
Q Consensus 319 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~-- 395 (423)
|+.+|.+++| ||..++++|+|+.+.|..+|...+...+.. .+.++..|++.|+||+++||.++|.+|++.-++..
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999998776333 45789999999999999999999999998765542
Q ss_pred -----------CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 -----------ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 -----------~~~It~~d~~~al~~~~~~~~ 416 (423)
...|+..||..++..+.++-+
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhccccC
Confidence 245888899999998877443
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=5.5e-31 Score=250.69 Aligned_cols=244 Identities=17% Similarity=0.200 Sum_probs=179.7
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
...+|+++.|--.......+.+...+... ....+|+++|.+++||||||||||++|+++|++++.+++.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34678888444444444443333222221 23346889999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHh-----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC------------CCC
Q 014525 245 IGDGAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF------------SSD 307 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~------------~~~ 307 (423)
+|++++.++++|..|.. ..||||||||||.+++++.+.. .....+....+|++.+++. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999998875 4699999999999999885322 1112223334666655431 335
Q ss_pred CCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCC----CcHHHHHHH
Q 014525 308 DRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDD----FNGAQLKAV 383 (423)
Q Consensus 308 ~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g----~s~~dl~~l 383 (423)
.+++||+|||+|+.|+|+|+|+||||..+ ..|+.++|.+|++.+++..++. ..++..|+..+.| |.|+--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 67999999999999999999999999865 5899999999999999988776 4678889888876 455544444
Q ss_pred HHHHHHHHHHh--------------------CCCCcCHHHHHHHHHHHHHh
Q 014525 384 CVEAGMLALRR--------------------DATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 384 ~~~A~~~A~~~--------------------~~~~It~~d~~~al~~~~~~ 414 (423)
..++...-+.+ .....|.+.+.++=..+...
T Consensus 344 yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 344 YDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 44444333322 12357777777666555443
No 38
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.6e-25 Score=227.89 Aligned_cols=228 Identities=18% Similarity=0.295 Sum_probs=171.3
Q ss_pred eecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCC----CCCCceEEc
Q 014525 136 GVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVR----PPKGVLLYG 211 (423)
Q Consensus 136 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~G 211 (423)
.|++++..++..+.+....++..++. ..-..|+||+.++..+.++|... +.|+. |.+++||.|
T Consensus 462 vv~~~TgIPv~~l~~~e~~kll~le~-----~L~~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~G 528 (786)
T COG0542 462 VVARWTGIPVAKLLEDEKEKLLNLER-----RLKKRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLG 528 (786)
T ss_pred HHHHHHCCChhhhchhhHHHHHHHHH-----HHhcceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeC
Confidence 45555555555444434344433332 45578999999999999999643 44543 445799999
Q ss_pred CCCCChhHHHHHHHHHhC---CcEEEEccchhhhh------------hhhchHHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 212 PPGTGKTLMARACAAQTN---ATFLKLAGPQLVQM------------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 212 p~GtGKT~la~ala~~l~---~~~i~v~~~~l~~~------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
|+|+|||.||+++|..+. ..++++|||+|+++ |+|+.++. .+++.+++++++||+||||++
T Consensus 529 PTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEK-- 604 (786)
T COG0542 529 PTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEK-- 604 (786)
T ss_pred CCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhh--
Confidence 999999999999999995 79999999999877 56666655 689999999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC------CeEEEEEcCCC----------------------------CCC
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDD------RIKVIAATNRA----------------------------DIL 322 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~------~v~vI~ttn~~----------------------------~~l 322 (423)
+|+++.++|+|+|+...-.++++ |++||+|||.. ..+
T Consensus 605 ---------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F 675 (786)
T COG0542 605 ---------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHF 675 (786)
T ss_pred ---------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhC
Confidence 69999999999999877666665 78999999952 126
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC-------CCC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHH
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM-------NVH---PDVNFEELARSTD--DFNGAQLKAVCVEAGML 390 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~---~~~~l~~la~~~~--g~s~~dl~~l~~~A~~~ 390 (423)
.|+|++ |+|.+|.|.+++.+...+|+..++..+ ++. ++.....|+.... .|-++-|+++++.-...
T Consensus 676 ~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~ 753 (786)
T COG0542 676 RPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIED 753 (786)
T ss_pred CHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHH
Confidence 899998 999999999999999999998776542 221 1112455665443 34567777776655544
Q ss_pred H
Q 014525 391 A 391 (423)
Q Consensus 391 A 391 (423)
.
T Consensus 754 ~ 754 (786)
T COG0542 754 P 754 (786)
T ss_pred H
Confidence 3
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=1.5e-22 Score=193.18 Aligned_cols=214 Identities=21% Similarity=0.256 Sum_probs=156.9
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCC---CceEEcCCCCChhHHHHHHHHHh-------CCcEEEEcc
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPK---GVLLYGPPGTGKTLMARACAAQT-------NATFLKLAG 237 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~---~vLl~Gp~GtGKT~la~ala~~l-------~~~~i~v~~ 237 (423)
.+.+++|++.+++.|.+.+.. +..+..+...|+.++. +++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~ 99 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR 99 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence 456899999999999997755 4455677778876543 48999999999999999999976 246999999
Q ss_pred chhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 317 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn 317 (423)
+++.+.|+|..+.....++..+ .++||||||++.+...+.. .....+.+..|.++++. ...+++||++++
T Consensus 100 ~~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~ 169 (287)
T CHL00181 100 DDLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMEN-----QRDDLVVIFAGY 169 (287)
T ss_pred HHHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCC
Confidence 9999999998876666666654 3489999999998654321 11234566666666653 235678888876
Q ss_pred CCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHh-------CCCCcHHHHHHHH
Q 014525 318 RAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARS-------TDDFNGAQLKAVC 384 (423)
Q Consensus 318 ~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~-------~~g~s~~dl~~l~ 384 (423)
... .++|++.+ ||+.+|.|++|+.+++.+|+..++.+....- +.....+... .+..+++++++++
T Consensus 170 ~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 170 KDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred cHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 432 34699998 9999999999999999999999998655431 1123333332 2224589999999
Q ss_pred HHHHHHHHHh
Q 014525 385 VEAGMLALRR 394 (423)
Q Consensus 385 ~~A~~~A~~~ 394 (423)
..|...-..|
T Consensus 248 e~~~~~~~~r 257 (287)
T CHL00181 248 DRARMRQANR 257 (287)
T ss_pred HHHHHHHHHH
Confidence 9888665444
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=7.5e-23 Score=195.39 Aligned_cols=212 Identities=21% Similarity=0.272 Sum_probs=160.2
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCC---CCCceEEcCCCCChhHHHHHHHHHhC-------CcEEEEccch
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRP---PKGVLLYGPPGTGKTLMARACAAQTN-------ATFLKLAGPQ 239 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~~~vLl~Gp~GtGKT~la~ala~~l~-------~~~i~v~~~~ 239 (423)
.+++|++++++.+.+.+.. +..++.+.+.|+.+ ..+++|+||||||||++|+++|+.+. .+++.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 4689999999999997766 66677888888764 34799999999999999999998762 3799999999
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
+...++|.....+..+|..+ .++||||||++.+.+.+.+ .....+.+..|+++++. ...+++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----QRDDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 99999998877777777765 3489999999998643311 11234556666666653 23577888887643
Q ss_pred --C---CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHh-------CCCCcHHHHHHHHHH
Q 014525 320 --D---ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARS-------TDDFNGAQLKAVCVE 386 (423)
Q Consensus 320 --~---~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~-------~~g~s~~dl~~l~~~ 386 (423)
+ .++|+|.+ ||+..|.||+|+.+++..|++.++.+....- +.....+..+ .+..+++++++++..
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 25899999 9999999999999999999999998765431 1123444444 455679999999998
Q ss_pred HHHHHHHh
Q 014525 387 AGMLALRR 394 (423)
Q Consensus 387 A~~~A~~~ 394 (423)
|......|
T Consensus 249 ~~~~~~~r 256 (284)
T TIGR02880 249 ARLRQANR 256 (284)
T ss_pred HHHHHHHH
Confidence 88765443
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-22 Score=195.03 Aligned_cols=207 Identities=25% Similarity=0.310 Sum_probs=162.1
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 245 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~ 245 (423)
+.+|+.++-..+.++.|.+-+..++...+.|.+.|....+|.|||||||||||+++.|+|++++..++-++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 48999999999999999999999999999999999999999999999999999999999999999998888765422
Q ss_pred hchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCC--CCcH--HHHHHHHHHHHhhcCCCCCC--CeEEEEEcCCC
Q 014525 246 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV--SGDR--EVQRTMLELLNQLDGFSSDD--RIKVIAATNRA 319 (423)
Q Consensus 246 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~--~~~~--~~~~~l~~ll~~~~~~~~~~--~v~vI~ttn~~ 319 (423)
... ++.+..... ..+||+|++||+-+.-+..... .+.. ...-+|..||+.++++.+.. .-+||+|||.+
T Consensus 274 --n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 --DSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --cHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 222 555554443 3479999999997653321111 1111 12247788999999887755 67899999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCC--CcHHHHHH
Q 014525 320 DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDD--FNGAQLKA 382 (423)
Q Consensus 320 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g--~s~~dl~~ 382 (423)
+.|||||+||||+|.+|++..-+.++...++..++..-. +..-+.++.+...+ .||+|+..
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 999999999999999999999999999999999987432 12224455444333 58888755
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=2.2e-21 Score=183.74 Aligned_cols=212 Identities=21% Similarity=0.270 Sum_probs=150.6
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCC---CCceEEcCCCCChhHHHHHHHHHh-------CCcEEEEccc
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPP---KGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGP 238 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~---~~vLl~Gp~GtGKT~la~ala~~l-------~~~~i~v~~~ 238 (423)
+++++|++.+++.|.+.+...... ......|+.++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999877655433 23344565433 368999999999999999999875 3478899999
Q ss_pred hhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 239 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
++.+.|+|+....+..+|..+. ++||||||+|.|.... ......+ .+..++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~---~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKE---AIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHH---HHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999998888878877653 4799999999996321 1011123 333444444432 345666666553
Q ss_pred CC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHh---------CCCCcHHHHHHH
Q 014525 319 AD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARS---------TDDFNGAQLKAV 383 (423)
Q Consensus 319 ~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~---------~~g~s~~dl~~l 383 (423)
.+ .++|++.+ ||+..+.||+++.+++.+|++.++......- +..+..++.. ....+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 36889998 9999999999999999999999988655432 2223444321 123578999999
Q ss_pred HHHHHHHHHHh
Q 014525 384 CVEAGMLALRR 394 (423)
Q Consensus 384 ~~~A~~~A~~~ 394 (423)
+..|......+
T Consensus 231 ~e~a~~~~~~r 241 (261)
T TIGR02881 231 IEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHH
Confidence 99888766544
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.5e-22 Score=183.62 Aligned_cols=240 Identities=23% Similarity=0.291 Sum_probs=179.9
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCC-----CCCCceEEcCCCCChhHHHHHHHHHh---------CCcEE
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVR-----PPKGVLLYGPPGTGKTLMARACAAQT---------NATFL 233 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-----~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i 233 (423)
.|+.++=-.+.++.+..++...+. |.+.+.. ..+-+|++||||||||+|++++|+.+ ...++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~----fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALL----FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHH----HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 456666666778888877665543 3333332 33459999999999999999999988 35789
Q ss_pred EEccchhhhhhhhchHHHHHHHHHHHHh-----CCCeEEEECCchhhhccCCC-CCCCCcHHHHHHHHHHHHhhcCCCCC
Q 014525 234 KLAGPQLVQMFIGDGAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFD-SEVSGDREVQRTMLELLNQLDGFSSD 307 (423)
Q Consensus 234 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~l~~ll~~~~~~~~~ 307 (423)
.+++..++++|++++.+.+..+|..+.. ..-..++|||++.++..|.. +......+..+.+..+|.+++.....
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988764 22345679999999987733 22223445667788888888888889
Q ss_pred CCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC------------------CCCCHHHHH
Q 014525 308 DRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH------------------PDVNFEELA 369 (423)
Q Consensus 308 ~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~------------------~~~~l~~la 369 (423)
.|+++++|+|-.+.+|.+|.. |-|.+.++.+|+...+.+|++..+..+-.. .+.....++
T Consensus 296 ~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~ 373 (423)
T KOG0744|consen 296 PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI 373 (423)
T ss_pred CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH
Confidence 999999999999999999999 999999999999999999999877542111 001122233
Q ss_pred Hh-CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 370 RS-TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 370 ~~-~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
.. +.|.||+-|+.+=-.|. |..-...+|+.++|..|+.....+.
T Consensus 374 ~~~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea~~k~ 418 (423)
T KOG0744|consen 374 ELSTVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEAAKKL 418 (423)
T ss_pred HHhhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHHHHHHH
Confidence 33 47999999988655444 2233446899999999887765543
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.5e-21 Score=181.23 Aligned_cols=233 Identities=24% Similarity=0.376 Sum_probs=167.3
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+...|++||-.....+.|.+......+. . ..-.|=+++|||||||||||++|+-||...|..+-.+.+.+....
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNT-K----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANT-K----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccc-c----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 4456888888777777776644322221 0 111344689999999999999999999999988887777665321
Q ss_pred hhchHHHHHHHHHHHHhCCC-eEEEECCchhhhccCCCCCCCCcHHHH-HHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 245 IGDGAKLVRDAFQLAKEKSP-CIIFIDEIDAIGTKRFDSEVSGDREVQ-RTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~-~vl~iDEid~l~~~r~~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
-.+....++.+|+.+..... -+|||||.|.++..|.... ..+.+ ..|..||=. .-+...+++++.+||+|..|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty---mSEaqRsaLNAlLfR--TGdqSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY---MSEAQRSALNALLFR--TGDQSRDIVLVLATNRPGDL 498 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh---hcHHHHHHHHHHHHH--hcccccceEEEeccCCccch
Confidence 12345667899999987554 4778999999998774332 22333 344444421 11334578899999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC-----------------------CC----HHHHHHhCCCC
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD-----------------------VN----FEELARSTDDF 375 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-----------------------~~----l~~la~~~~g~ 375 (423)
|.++-. |||.+++||+|..++|..++..++.++-..+. .+ +.+.|+.|+||
T Consensus 499 DsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 499 DSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred hHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999998 99999999999999999999998876543210 01 46678899999
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 376 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 376 s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
||++|..++.-....++-+....++..-|.+.+..
T Consensus 577 SGREiakLva~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 577 SGREIAKLVASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred cHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 99999999886666666666666766666665544
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.5e-21 Score=192.97 Aligned_cols=240 Identities=20% Similarity=0.233 Sum_probs=184.8
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC----CcEEEEccchhhhhhh
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQLVQMFI 245 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~~~l~~~~~ 245 (423)
.+++-....+++..+....| + ..+.++||+||+|+|||.|+++++++.. +++..++|+.+...-.
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v-~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------V-FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------c-cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 34444555555555543333 1 2345799999999999999999999883 6788899999988777
Q ss_pred hchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhh-cCC-CCCCCeEEEEEcCCCCCCC
Q 014525 246 GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL-DGF-SSDDRIKVIAATNRADILD 323 (423)
Q Consensus 246 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~-~~~-~~~~~v~vI~ttn~~~~l~ 323 (423)
....+.+..+|..+.++.|+||+||++|.|++... .+.+.+......+..+++++ ..+ .....+.+|+|.+....++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 77788899999999999999999999999998322 22222333444444455322 122 2234578999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----CCCC
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR----DATE 398 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~----~~~~ 398 (423)
|.|.++++|+.++.+|+|+..+|.+|+...+.+.... ...|++.++..|+||.+.|+..++.+|...|+.. ....
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kl 635 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKL 635 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999988765533 2345667999999999999999999999999833 2237
Q ss_pred cCHHHHHHHHHHHHHhhhhhccc
Q 014525 399 VNHEDFNEGIIQVQAKKKASLNY 421 (423)
Q Consensus 399 It~~d~~~al~~~~~~~~~~~~~ 421 (423)
+|.++|.++++...+...+.+.+
T Consensus 636 ltke~f~ksL~~F~P~aLR~ik~ 658 (952)
T KOG0735|consen 636 LTKELFEKSLKDFVPLALRGIKL 658 (952)
T ss_pred chHHHHHHHHHhcChHHhhhccc
Confidence 99999999999998877665544
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=2.4e-21 Score=163.63 Aligned_cols=130 Identities=47% Similarity=0.752 Sum_probs=109.0
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCC-CeEEEECCchhhhccCCCCCCC
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVS 285 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~r~~~~~~ 285 (423)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.....+..+|..+.... |+||||||+|.+.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~--- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS--- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc---
Confidence 689999999999999999999999999999999998888999999999999998887 9999999999999876211
Q ss_pred CcHHHHHHHHHHHHhhcCCCCC-CCeEEEEEcCCCCCCChhhhcCCCcceEEEcCC
Q 014525 286 GDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 286 ~~~~~~~~l~~ll~~~~~~~~~-~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 340 (423)
........+..++..++..... .+++||+|||.++.+++.+++ +||+..+++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2333344455556666555444 579999999999999999997 79999999874
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=3.4e-21 Score=172.97 Aligned_cols=195 Identities=25% Similarity=0.353 Sum_probs=133.6
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
..+.+|++++||+..+..+.-.+...... + .+..++|||||||+|||+||+.||++++.+|..++++.+-.
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------G-EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------T-S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------C-CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 45679999999999999987766543322 1 23458999999999999999999999999999888764321
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc-----CCCCC--------CCe
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD-----GFSSD--------DRI 310 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~-----~~~~~--------~~v 310 (423)
.+.+..++.... ...||||||||++ +...|..|+..++... +.... .++
T Consensus 89 -----~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 89 -----AGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred -----HHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 122223333332 3479999999998 5678889998887532 11111 257
Q ss_pred EEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHH
Q 014525 311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAG 388 (423)
Q Consensus 311 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~ 388 (423)
.+|++|++...+.+.|+. ||..+..+..++.++..+|++.....+++.- +....+||.++.| +|+-..++++.+.
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 899999999999999998 9999999999999999999998888777763 2336788888886 7888878887654
No 48
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.86 E-value=1.4e-21 Score=211.57 Aligned_cols=235 Identities=17% Similarity=0.232 Sum_probs=158.2
Q ss_pred eecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCC
Q 014525 136 GVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGT 215 (423)
Q Consensus 136 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~Gt 215 (423)
+|+.++.+++..+......++..+ ....+..|+|++.+++.+...+....... .. .-+|...+||+|||||
T Consensus 539 vv~~~tgip~~~~~~~~~~~l~~l-----~~~l~~~viGQ~~ai~~l~~~i~~~~~gl---~~-~~~p~~~~Lf~Gp~G~ 609 (857)
T PRK10865 539 VLARWTGIPVSRMLESEREKLLRM-----EQELHHRVIGQNEAVEAVSNAIRRSRAGL---SD-PNRPIGSFLFLGPTGV 609 (857)
T ss_pred HHHHHHCCCchhhhhhHHHHHHHH-----HHHhCCeEeCCHHHHHHHHHHHHHHHhcc---cC-CCCCCceEEEECCCCC
Confidence 566666666665544433333333 23567889999999999999986432110 00 0022246999999999
Q ss_pred ChhHHHHHHHHHh---CCcEEEEccchhhhh-----hhhchHHH-----HHHHHHHHHhCCCeEEEECCchhhhccCCCC
Q 014525 216 GKTLMARACAAQT---NATFLKLAGPQLVQM-----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 282 (423)
Q Consensus 216 GKT~la~ala~~l---~~~~i~v~~~~l~~~-----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~ 282 (423)
|||++|+++|+.+ +.+++.++|+++... .+|...++ -..+.+..+..+++||+|||++++
T Consensus 610 GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka------- 682 (857)
T PRK10865 610 GKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------- 682 (857)
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-------
Confidence 9999999999987 467999999987543 23222111 123455666777899999999985
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCC------CCCeEEEEEcCCC-------------------------CCCChhhhcCCC
Q 014525 283 EVSGDREVQRTMLELLNQLDGFSS------DDRIKVIAATNRA-------------------------DILDPALMRSGR 331 (423)
Q Consensus 283 ~~~~~~~~~~~l~~ll~~~~~~~~------~~~v~vI~ttn~~-------------------------~~l~~~l~~~~R 331 (423)
++.+++.|+++++...-.+. -.+++||+|||.. ..+.|+|++ |
T Consensus 683 ----~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--R 756 (857)
T PRK10865 683 ----HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--R 756 (857)
T ss_pred ----CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--h
Confidence 78899999999986532222 2367799999963 236788998 9
Q ss_pred cceEEEcCCCCHHHHHHHHHHHhhcC-------CCCCCCC---HHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 014525 332 LDRKIEFPHPTEEARARILQIHSRKM-------NVHPDVN---FEELARSTD--DFNGAQLKAVCVEAGMLAL 392 (423)
Q Consensus 332 f~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~~---l~~la~~~~--g~s~~dl~~l~~~A~~~A~ 392 (423)
++.++.|.+++.+....|++.++..+ ++.-.++ +..|+.... .+.++.|+++++.-....+
T Consensus 757 ld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~l 829 (857)
T PRK10865 757 IDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPL 829 (857)
T ss_pred CCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHH
Confidence 99999999999999999988777542 2222222 455554322 2335778887776655443
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.2e-20 Score=188.51 Aligned_cols=241 Identities=27% Similarity=0.391 Sum_probs=190.8
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhch
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDG 248 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~ 248 (423)
|-...+++..+..+...+ .|...+.. .++.....+||+|+||||||++++++|.+++.+++.++|.++.....+..
T Consensus 400 ~~~~~~~~~~~~~l~~vl-~p~~~~s~---~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVL-SPQKQPSG---ALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT 475 (953)
T ss_pred cCCCccchHHHHHHHHHh-CcccCcch---hccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh
Confidence 334445666666444433 22222211 12222346999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC-CCCCCeEEEEEcCCCCCCChhhh
Q 014525 249 AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-SSDDRIKVIAATNRADILDPALM 327 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~~v~vI~ttn~~~~l~~~l~ 327 (423)
+..+...|..++.+.|+||||-++|.++-++.+ +.+..++..+..++. .+.+ .+...++||+|++..+.+++.++
T Consensus 476 etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~ 551 (953)
T KOG0736|consen 476 ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQ 551 (953)
T ss_pred HHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHH
Confidence 999999999999999999999999999854422 334455555555555 2223 35668999999999999999999
Q ss_pred cCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh---C---------
Q 014525 328 RSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR---D--------- 395 (423)
Q Consensus 328 ~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~---~--------- 395 (423)
+ -|...|.++.|+.++|.+|++.++....+..++....++..+.||+.+++..++..+-..+..+ .
T Consensus 552 ~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~ 629 (953)
T KOG0736|consen 552 S--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEE 629 (953)
T ss_pred H--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhc
Confidence 8 7888999999999999999999999999999999999999999999999999887773333222 1
Q ss_pred --------CCCcCHHHHHHHHHHHHHhhhhhc
Q 014525 396 --------ATEVNHEDFNEGIIQVQAKKKASL 419 (423)
Q Consensus 396 --------~~~It~~d~~~al~~~~~~~~~~~ 419 (423)
...++++||.+|+.+++..+++++
T Consensus 630 ~~~~~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 630 DEGELCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred cccccccccceecHHHHHHHHHHHHHhhhhhc
Confidence 257999999999999998887755
No 50
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.85 E-value=9.2e-22 Score=213.69 Aligned_cols=237 Identities=18% Similarity=0.245 Sum_probs=162.2
Q ss_pred eecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCC
Q 014525 136 GVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGT 215 (423)
Q Consensus 136 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~Gt 215 (423)
.|+.++..++..+......++..++. .....|+|++.+++.+...+....... .. .-+|...+||+|||||
T Consensus 536 v~~~~tgip~~~~~~~e~~~l~~l~~-----~l~~~v~GQ~~av~~v~~~i~~~~~gl---~~-~~~p~~~~Lf~Gp~Gv 606 (852)
T TIGR03346 536 VVSRWTGIPVSKMLEGEREKLLHMEE-----VLHERVVGQDEAVEAVSDAIRRSRAGL---SD-PNRPIGSFLFLGPTGV 606 (852)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHH-----HhhcccCCChHHHHHHHHHHHHHhccC---CC-CCCCCeEEEEEcCCCC
Confidence 44555555444443333333333222 345679999999999999986532210 00 0124456999999999
Q ss_pred ChhHHHHHHHHHh---CCcEEEEccchhhhh-----hhhchHHH-----HHHHHHHHHhCCCeEEEECCchhhhccCCCC
Q 014525 216 GKTLMARACAAQT---NATFLKLAGPQLVQM-----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 282 (423)
Q Consensus 216 GKT~la~ala~~l---~~~~i~v~~~~l~~~-----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~ 282 (423)
|||++|+++|..+ +.+++.++|+++... ++|...++ ...+...++.++++||+||||+++
T Consensus 607 GKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------- 679 (852)
T TIGR03346 607 GKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------- 679 (852)
T ss_pred CHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-------
Confidence 9999999999987 468999999887543 22222111 124666777888899999999985
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCC------CCCeEEEEEcCCCC-------------------------CCChhhhcCCC
Q 014525 283 EVSGDREVQRTMLELLNQLDGFSS------DDRIKVIAATNRAD-------------------------ILDPALMRSGR 331 (423)
Q Consensus 283 ~~~~~~~~~~~l~~ll~~~~~~~~------~~~v~vI~ttn~~~-------------------------~l~~~l~~~~R 331 (423)
++.+++.|+++++...-.+. -.+++||+|||... .+.|+|+. |
T Consensus 680 ----~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--R 753 (852)
T TIGR03346 680 ----HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--R 753 (852)
T ss_pred ----CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--C
Confidence 78999999999987542222 24688999999732 25678887 9
Q ss_pred cceEEEcCCCCHHHHHHHHHHHhhc-------CCCCCCC---CHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh
Q 014525 332 LDRKIEFPHPTEEARARILQIHSRK-------MNVHPDV---NFEELARSTD--DFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 332 f~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~~~~---~l~~la~~~~--g~s~~dl~~l~~~A~~~A~~~ 394 (423)
++.++.|.+++.+...+|+...+.. .++...+ .+..|+...+ .+..+.|+++++......+.+
T Consensus 754 id~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 754 IDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred cCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999998766542 1222112 2566777644 567899999888887665544
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=6e-20 Score=167.87 Aligned_cols=219 Identities=20% Similarity=0.268 Sum_probs=173.2
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
..+..|++.+|+++.++.+.-++..+.... ....++|||||||.|||+||..+|++++..+-..+++.+-
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 345789999999999999988887654442 3456899999999999999999999999998877776542
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc-------CCCCC------CCe
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD-------GFSSD------DRI 310 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~-------~~~~~------~~v 310 (423)
..+.+..++..... ..|+||||||++. +.+...|+-.++... +...+ ..+
T Consensus 90 ----K~gDlaaiLt~Le~--~DVLFIDEIHrl~-----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 ----KPGDLAAILTNLEE--GDVLFIDEIHRLS-----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ----ChhhHHHHHhcCCc--CCeEEEehhhhcC-----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 23334344444433 4799999999984 456667777776422 11111 267
Q ss_pred EEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014525 311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 311 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~ 389 (423)
.+|++|.+...+...|+. ||..+..+..++.++..+|+......+++.- +....++|.++.| +|+=..+++++..-
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRD 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRD 229 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHH
Confidence 889999999999999998 9999999999999999999999888777763 3346788888886 89988899999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHH
Q 014525 390 LALRRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 390 ~A~~~~~~~It~~d~~~al~~~~ 412 (423)
.|.-++...|+.+-..+|++.+.
T Consensus 230 fa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 230 FAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHhcCCcccHHHHHHHHHHhC
Confidence 99989999999988888887664
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.85 E-value=3.9e-21 Score=207.07 Aligned_cols=223 Identities=23% Similarity=0.363 Sum_probs=151.1
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh-------
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV------- 241 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~------- 241 (423)
-++++|++.+++.+.+.+...... +-..+.+++|+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRG 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcC
Confidence 356899999999999977543222 111234799999999999999999999999999999865432
Q ss_pred --hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc--CCC--------CCCC
Q 014525 242 --QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFS--------SDDR 309 (423)
Q Consensus 242 --~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~--~~~--------~~~~ 309 (423)
..|+|...+.+.+.+..+....| ||||||||++.+... + +..+.|+++++... .+. ..++
T Consensus 392 ~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~--~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 392 HRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----G--DPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----C--CHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 24667777777777777665555 899999999975321 1 22356777765311 111 1247
Q ss_pred eEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhh-----cCCCC------CCCCHHHHHH-hCCCCcH
Q 014525 310 IKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR-----KMNVH------PDVNFEELAR-STDDFNG 377 (423)
Q Consensus 310 v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~-----~~~~~------~~~~l~~la~-~~~g~s~ 377 (423)
+++|+|||..+.++++|++ || .+|.|+.|+.+++.+|++.++. ..++. .+..+..|+. ++..+..
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~ 540 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV 540 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence 8999999999999999999 99 5789999999999999987762 22222 1122455554 3333344
Q ss_pred HHHHH----HHHHHHHHHHHhCC--------CCcCHHHHHHHHH
Q 014525 378 AQLKA----VCVEAGMLALRRDA--------TEVNHEDFNEGII 409 (423)
Q Consensus 378 ~dl~~----l~~~A~~~A~~~~~--------~~It~~d~~~al~ 409 (423)
++|+. +|+.++......+. ..|+.+++.+.+.
T Consensus 541 R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 541 RNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 55555 55555443332121 3678887766553
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.85 E-value=1.8e-19 Score=176.21 Aligned_cols=218 Identities=21% Similarity=0.251 Sum_probs=162.0
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
..+.+|++++|++..++.+...+...... + .++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 34568999999999999998877532211 1 3567899999999999999999999999888777665331
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC-------CC------CCCCe
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-------FS------SDDRI 310 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~-------~~------~~~~v 310 (423)
....+..++... ..++||||||||.+.. ..+..+..+++.... .. ...++
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 112222333332 3468999999999842 334455555543210 00 11247
Q ss_pred EEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014525 311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 311 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~ 389 (423)
.+|++||++..+++++.+ ||...+.|++|+.+++.+|++......++.- +..+..|+..+.| +++.+..++..+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 789999999999999988 9999999999999999999998887665542 2237788888886 57889999999888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHH
Q 014525 390 LALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 390 ~A~~~~~~~It~~d~~~al~~~ 411 (423)
.|...+...|+.+++..++..+
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHh
Confidence 8877777789999999999765
No 54
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=2.2e-19 Score=173.98 Aligned_cols=214 Identities=21% Similarity=0.232 Sum_probs=156.2
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhc
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD 247 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~ 247 (423)
+|++++|++..++.+...+...... -.++.+++|+||||||||++|+++|++++..+..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 6899999999999998877533221 124567999999999999999999999998877666543211
Q ss_pred hHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC-------------CCCCCeEEEE
Q 014525 248 GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-------------SSDDRIKVIA 314 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-------------~~~~~v~vI~ 314 (423)
...+...+... ..+.+|||||+|.+.+ ..+..+..+++..... ....++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11122222222 3457999999999842 3445555555432210 0112477899
Q ss_pred EcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014525 315 ATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 315 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
+||.+..+++++++ ||...+.|++|+.+++.++++......+.. ++..+..++..+.| +++.+..++..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHH
Confidence 99999999999998 998899999999999999999887755443 22236788888877 568888899988877766
Q ss_pred hCCCCcCHHHHHHHHHHH
Q 014525 394 RDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 394 ~~~~~It~~d~~~al~~~ 411 (423)
.+...|+.+++..++..+
T Consensus 212 ~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 212 RGQKIINRDIALKALEML 229 (305)
T ss_pred cCCCCcCHHHHHHHHHHh
Confidence 666789999999999874
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=3.5e-20 Score=191.21 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=157.8
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCc
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NAT 231 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~ 231 (423)
+...+.+|++++|++..++.++..+.. ..+.++||+||||||||++|+++++.+ +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 344668999999999999999865421 234689999999999999999998753 368
Q ss_pred EEEEccchh-------hhhhhhchHHHH---HHH----------HHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHH
Q 014525 232 FLKLAGPQL-------VQMFIGDGAKLV---RDA----------FQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 291 (423)
Q Consensus 232 ~i~v~~~~l-------~~~~~g~~~~~~---~~~----------~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~ 291 (423)
|+.++|... ....+|...... ... .........++||||||+.| ++..|
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----------~~~~q 192 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----------HPVQM 192 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----------CHHHH
Confidence 999998631 111111100000 000 01122334589999999998 56788
Q ss_pred HHHHHHHHhhcCC-----------------------CCCCCeE-EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHH
Q 014525 292 RTMLELLNQLDGF-----------------------SSDDRIK-VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARA 347 (423)
Q Consensus 292 ~~l~~ll~~~~~~-----------------------~~~~~v~-vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 347 (423)
+.|+.+++....+ ....++. |++||+.++.++|++++ |+ ..+.|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 8888888652210 0112344 45667789999999998 87 57889999999999
Q ss_pred HHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 348 RILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 348 ~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
+|++..+++.++. ++..++.|+.+++ +++++.++++.|+..|..+++..|+.+|+.+++..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 9999999876654 2223566666654 79999999999999998888889999999999863
No 56
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.82 E-value=2.6e-20 Score=201.06 Aligned_cols=233 Identities=14% Similarity=0.229 Sum_probs=159.7
Q ss_pred eecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCC
Q 014525 136 GVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGT 215 (423)
Q Consensus 136 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~Gt 215 (423)
.|+.++.+++..+......++..++. ..-..|+|++.+++.+.+.+....... .. .-+|-..+||+|||||
T Consensus 537 vv~~~tgip~~~~~~~e~~~l~~l~~-----~L~~~v~GQ~~Av~~v~~~i~~~~~gl---~~-~~~p~~~~lf~Gp~Gv 607 (852)
T TIGR03345 537 VVADWTGIPVGRMVRDEIEAVLSLPD-----RLAERVIGQDHALEAIAERIRTARAGL---ED-PRKPLGVFLLVGPSGV 607 (852)
T ss_pred HHHHHHCCCchhhchhHHHHHHHHHH-----HhcCeEcChHHHHHHHHHHHHHHhcCC---CC-CCCCceEEEEECCCCC
Confidence 45555565555444333333333222 345689999999999999986542210 00 0122235899999999
Q ss_pred ChhHHHHHHHHHh---CCcEEEEccchhhhh------------hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCC
Q 014525 216 GKTLMARACAAQT---NATFLKLAGPQLVQM------------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 280 (423)
Q Consensus 216 GKT~la~ala~~l---~~~~i~v~~~~l~~~------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~ 280 (423)
|||++|+++|..+ ...++.++|+++... |+|..++. .+.+.+++++++||+||||+++
T Consensus 608 GKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka----- 680 (852)
T TIGR03345 608 GKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA----- 680 (852)
T ss_pred CHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc-----
Confidence 9999999999998 468999999988643 34443332 3567778899999999999984
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCCC------CCeEEEEEcCCC-----------------------------CCCChh
Q 014525 281 DSEVSGDREVQRTMLELLNQLDGFSSD------DRIKVIAATNRA-----------------------------DILDPA 325 (423)
Q Consensus 281 ~~~~~~~~~~~~~l~~ll~~~~~~~~~------~~v~vI~ttn~~-----------------------------~~l~~~ 325 (423)
++++++.|+++++...-.+.. .+++||+|||.. ..+.|+
T Consensus 681 ------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 754 (852)
T TIGR03345 681 ------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPA 754 (852)
T ss_pred ------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHH
Confidence 789999999999875433322 378899999852 126788
Q ss_pred hhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC--------CCC---CCCCHHHHHHhCCC--CcHHHHHHHHHHHHHHHH
Q 014525 326 LMRSGRLDRKIEFPHPTEEARARILQIHSRKM--------NVH---PDVNFEELARSTDD--FNGAQLKAVCVEAGMLAL 392 (423)
Q Consensus 326 l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~--------~~~---~~~~l~~la~~~~g--~s~~dl~~l~~~A~~~A~ 392 (423)
|++ |++ +|.|.+++.++..+|+...+..+ ++. .+.....|+....+ +-++.+.++++.-...++
T Consensus 755 fln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 755 FLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPEL 831 (852)
T ss_pred Hhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 888 996 89999999999999998766432 222 12225667766543 456788887776555444
Q ss_pred H
Q 014525 393 R 393 (423)
Q Consensus 393 ~ 393 (423)
.
T Consensus 832 a 832 (852)
T TIGR03345 832 S 832 (852)
T ss_pred H
Confidence 3
No 57
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.4e-20 Score=192.78 Aligned_cols=263 Identities=16% Similarity=0.207 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCCCceEEEEcccccCCCCCC
Q 014525 51 SFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLK 130 (423)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (423)
.++..|+..++.++.++..+....+..- +....+..++..+..++|..++..... +...... .
T Consensus 464 ~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p~~~~~--~~~~~~~--------------~ 526 (898)
T KOG1051|consen 464 PLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIPDELSE--KSNDNQG--------------G 526 (898)
T ss_pred cchhhhccchhHHhhhccccCCcccchh-hhcccCCCCcchhhhccccccchhhhh--hcccccC--------------C
Confidence 6777888888999999887777766665 667778888888888888888733222 1111110 1
Q ss_pred CCCeeee-cccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceE
Q 014525 131 PGDLVGV-NKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLL 209 (423)
Q Consensus 131 ~g~~~~i-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl 209 (423)
+.++..+ ..++...++.+......++..++- ..-+.|+||++++..|.++|....... .+. +|+..+||
T Consensus 527 ~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~-----~L~~~V~gQ~eAv~aIa~AI~~sr~gl---~~~--~~~awflf 596 (898)
T KOG1051|consen 527 ESDISEVVSRWTGIPVDRLAEAEAERLKKLEE-----RLHERVIGQDEAVAAIAAAIRRSRAGL---KDP--NPDAWFLF 596 (898)
T ss_pred ccchhhhhhhhcCCchhhhhhhHHHHHHHHHH-----HHHhhccchHHHHHHHHHHHHhhhccc---CCC--CCCeEEEE
Confidence 2222222 333333333333322233333322 345679999999999999997654321 110 35667999
Q ss_pred EcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh---------hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhc
Q 014525 210 YGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM---------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 210 ~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~---------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
.||+|+|||.+|+++|..+ .-.|+.+++++|.+. |+|..++. .+++.+++++++||+|||||+
T Consensus 597 lGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~LteavrrrP~sVVLfdeIEk--- 671 (898)
T KOG1051|consen 597 LGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVKRRPYSVVLFEEIEK--- 671 (898)
T ss_pred ECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHhcCCceEEEEechhh---
Confidence 9999999999999999988 467999999976542 55665554 789999999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC------CeEEEEEcCCC--------------------------------
Q 014525 278 KRFDSEVSGDREVQRTMLELLNQLDGFSSDD------RIKVIAATNRA-------------------------------- 319 (423)
Q Consensus 278 ~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~------~v~vI~ttn~~-------------------------------- 319 (423)
+|+.+++.|+++++.++-.++++ |++||+|+|..
T Consensus 672 --------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~ 743 (898)
T KOG1051|consen 672 --------AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVS 743 (898)
T ss_pred --------cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhh
Confidence 69999999999999887777665 89999998751
Q ss_pred --------CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhh
Q 014525 320 --------DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR 355 (423)
Q Consensus 320 --------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~ 355 (423)
..+.|++++ |.+..+.|.+.+.++..+|....+.
T Consensus 744 ~~~~~~~~~~~r~Ef~n--rid~i~lf~~l~~~~~~~i~~~~~~ 785 (898)
T KOG1051|consen 744 DAVRIYNKQFFRKEFLN--RIDELDLNLPLDRDELIEIVNKQLT 785 (898)
T ss_pred hhhhcccccccChHHhc--ccceeeeecccchhhHhhhhhhHHH
Confidence 223456665 7888888888887777777665543
No 58
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-19 Score=183.50 Aligned_cols=225 Identities=22% Similarity=0.369 Sum_probs=159.3
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh-----
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV----- 241 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~----- 241 (423)
+.=.+-.|++++++.|.+++....... + ..+.-++|+||||+|||+|+++||+.++..|++++.....
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~------~-~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEI 392 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTK------K-LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEI 392 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhc------c-CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHh
Confidence 444677899999999999886433221 1 1234588999999999999999999999999999865432
Q ss_pred ----hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--C--------CCC
Q 014525 242 ----QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--F--------SSD 307 (423)
Q Consensus 242 ----~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~--------~~~ 307 (423)
..|+|..++.+-+....+....| |++|||||+++..- .++|. ..|+++|+-=++ | ..-
T Consensus 393 RGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGDPa--SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 393 RGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGDPA--SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCChH--HHHHhhcCHhhcCchhhccccCccch
Confidence 23899999988788888877776 89999999997542 23443 477777753221 1 112
Q ss_pred CCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh-----hcCCCCC------CCCHHHHHHhCCCCc
Q 014525 308 DRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHS-----RKMNVHP------DVNFEELARSTDDFN 376 (423)
Q Consensus 308 ~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~~------~~~l~~la~~~~g~s 376 (423)
++|++|+|+|..+.++.+|+. |+ .+|.++.++.++..+|.+.|+ ...++.. +..+..|.+...--+
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREA 541 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREA 541 (782)
T ss_pred hheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhh
Confidence 489999999999999999999 99 799999999999999999876 2233331 112344443322112
Q ss_pred H-----HHHHHHHHHHHHHHHHhCCC---CcCHHHHHHHHH
Q 014525 377 G-----AQLKAVCVEAGMLALRRDAT---EVNHEDFNEGII 409 (423)
Q Consensus 377 ~-----~dl~~l~~~A~~~A~~~~~~---~It~~d~~~al~ 409 (423)
| ++|..+|+.++..-+..... .|+..++.+-+.
T Consensus 542 GVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 542 GVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 2 56777888777665544332 467666666553
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.3e-18 Score=186.55 Aligned_cols=223 Identities=24% Similarity=0.334 Sum_probs=165.6
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEE
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 234 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~ 234 (423)
.+-.+++++|++..+..+.+.+.. ...++++|+||||||||++|+++|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 345788999999999988875532 234589999999999999999999987 678999
Q ss_pred Eccchhh--hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 235 LAGPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 235 v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
++++.+. .+|.|+.+..++.+++.+..+.+.||||||+|.+.+.+..++ ++.+.++.|...+. .+.+.+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~--~~~~~~~~L~~~l~-------~g~i~~ 314 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG--GSMDASNLLKPALS-------SGKLRC 314 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC--ccHHHHHHHHHHHh-------CCCeEE
Confidence 9998887 468899999999999999887889999999999986543221 23345555555443 367889
Q ss_pred EEEcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCC----CC-CCCCHHHHHHhCCCCc-----H
Q 014525 313 IAATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMN----VH-PDVNFEELARSTDDFN-----G 377 (423)
Q Consensus 313 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~~l~~la~~~~g~s-----~ 377 (423)
|++||..+ ..|+++.| ||. .|.++.|+.+++.+|++.....+. +. .+..+..++..+..|- |
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P 391 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLP 391 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCC
Confidence 99999633 47999999 996 799999999999999997665432 11 2223556666555443 3
Q ss_pred HHHHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHHHH
Q 014525 378 AQLKAVCVEAGMLALRR----DATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 378 ~dl~~l~~~A~~~A~~~----~~~~It~~d~~~al~~~~ 412 (423)
.-...++.+|+.....+ ....|+.+|+..++..+.
T Consensus 392 ~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 392 DKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 44456677776543222 234699999999998874
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-18 Score=165.85 Aligned_cols=204 Identities=26% Similarity=0.370 Sum_probs=139.1
Q ss_pred CCCCcccccCchHHHH---HHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 165 PTEDYNDIGGLEKQIQ---ELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~---~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+.++++++||+..+- -|...+.. ....+++||||||||||++|+.||..++..|..++...
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 4578999999987663 33333322 23458999999999999999999999999999998753
Q ss_pred hhhhhchHHHHHHHHHHHHhCC----CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc-
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT- 316 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~----~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt- 316 (423)
.+.+.++.+++.++... ..||||||||++. ..-|..|+-.++. +.+++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQD~lLp~vE~-------G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQDALLPHVEN-------GTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhhhhhhhhhcC-------CeEEEEeccC
Confidence 24466778888885432 4799999999984 3445666666543 567777766
Q ss_pred -CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh--hcCCCC------CCCCHHHHHHhCCCCcHHHHHHHHHHH
Q 014525 317 -NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHS--RKMNVH------PDVNFEELARSTDDFNGAQLKAVCVEA 387 (423)
Q Consensus 317 -n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~------~~~~l~~la~~~~g~s~~dl~~l~~~A 387 (423)
|+.-.+++++++ |. .++.|.+++.++...++...+ ...++. .+..+..|+..+.| |.+.+++..
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHH
Confidence 445569999999 76 688999999999999998733 222332 12235666776665 444444433
Q ss_pred HHHHHHhCC-CCcCHHHHHHHHHHHHH
Q 014525 388 GMLALRRDA-TEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 388 ~~~A~~~~~-~~It~~d~~~al~~~~~ 413 (423)
-+.+..... ..++.+++.+.+.+-..
T Consensus 214 E~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 214 ELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 333322221 23447777777776555
No 61
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.79 E-value=1.8e-18 Score=183.60 Aligned_cols=208 Identities=19% Similarity=0.253 Sum_probs=147.3
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-----h
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-----M 243 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-----~ 243 (423)
-..|+|++.+++.+...+....... .. .-+|..++||+||||||||++|+++|..++.+++.++|+++.. .
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHH
Confidence 3568999999999999986432210 00 0124457999999999999999999999999999999998753 3
Q ss_pred hhhchHHHH-----HHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC------CCCeEE
Q 014525 244 FIGDGAKLV-----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------DDRIKV 312 (423)
Q Consensus 244 ~~g~~~~~~-----~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~v~v 312 (423)
++|...+++ ..+.+.++.++++||||||||++ ++++++.|+++|+...-.+. -.++++
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 444332221 23556677788899999999996 67899999999986532222 147889
Q ss_pred EEEcCCC-------------------------CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc-------CCCC
Q 014525 313 IAATNRA-------------------------DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK-------MNVH 360 (423)
Q Consensus 313 I~ttn~~-------------------------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~ 360 (423)
|+|||.. ..+.|+|++ |+|.+|.|++++.++..+|+..++.. .++.
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~ 679 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVS 679 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999932 236789988 99999999999999999999876642 2332
Q ss_pred CCC---CHHHHHHhC--CCCcHHHHHHHHHHHHHHHHH
Q 014525 361 PDV---NFEELARST--DDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 361 ~~~---~l~~la~~~--~g~s~~dl~~l~~~A~~~A~~ 393 (423)
-.+ .+..|+... ..+-++.|+.+++.-....+.
T Consensus 680 l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 680 LEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred ceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 222 245566433 234456777776665554443
No 62
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.7e-19 Score=179.57 Aligned_cols=196 Identities=24% Similarity=0.378 Sum_probs=143.8
Q ss_pred cceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhH
Q 014525 140 DSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTL 219 (423)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~ 219 (423)
.+..++..||....+ ..+.++.......=+|-.|++++++.|.+++...... |-..+..++|+||||+|||.
T Consensus 382 NYLdwlt~LPWgk~S-~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTS 453 (906)
T KOG2004|consen 382 NYLDWLTSLPWGKSS-TENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTS 453 (906)
T ss_pred HHHHHHHhCCCCCCC-hhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCccc
Confidence 333344455543322 2233333333344567889999999999988654333 22334568999999999999
Q ss_pred HHHHHHHHhCCcEEEEccchhhh---------hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHH
Q 014525 220 MARACAAQTNATFLKLAGPQLVQ---------MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREV 290 (423)
Q Consensus 220 la~ala~~l~~~~i~v~~~~l~~---------~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~ 290 (423)
++++||+.++..|++++...+.+ .|+|..++.+-+....+..+.| +++|||||+++.. ..++|.
T Consensus 454 I~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g-----~qGDPa- 526 (906)
T KOG2004|consen 454 IAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG-----HQGDPA- 526 (906)
T ss_pred HHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC-----CCCChH-
Confidence 99999999999999998654432 3899999988888888888776 8899999999732 223332
Q ss_pred HHHHHHHHHhhcC----------CCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh
Q 014525 291 QRTMLELLNQLDG----------FSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHS 354 (423)
Q Consensus 291 ~~~l~~ll~~~~~----------~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 354 (423)
..|+++|+-=++ .-.-+.|++|+|+|..+.++++|+. |+ .+|.++-+..++...|.+.|+
T Consensus 527 -sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 527 -SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred -HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 577888753111 1122479999999999999999999 99 689999999999999999887
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.1e-17 Score=167.26 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=144.6
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++++|++.++..+...+... +.+..+||+||+|||||++|+.+|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 345689999999999999998887531 233468999999999999999999998652
Q ss_pred -------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 232 -------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 232 -------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
++.++... ..+...++.+.+.+. ...+.|+||||+|.+. .+.++.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHH
Confidence 22222210 011223444444333 3456799999999983 3455666
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~ 373 (423)
+..+++ ...++++|++|+.+..+.+++++ |+ ..+.|.+++.++..+.++..+...++. .+..+..|+..+.
T Consensus 142 LKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 142 LKTLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 555543 34678888899989999999999 88 578999999999999998888765554 2334777888777
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
| +.++..+++.++...+ ...||.+++.+.+
T Consensus 214 G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 214 G-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred C-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 6 7888888888766432 2357777765543
No 64
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.78 E-value=1.1e-17 Score=177.77 Aligned_cols=221 Identities=26% Similarity=0.354 Sum_probs=162.2
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEEc
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLA 236 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v~ 236 (423)
-.++.++|.+..+..+.+.+.. ..+.++||+||||||||++|+++|... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 4678899999999999986643 134578999999999999999999874 45566666
Q ss_pred cchhh--hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 014525 237 GPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 314 (423)
Q Consensus 237 ~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ 314 (423)
...++ ..|.|+.+..++.++..+....++||||||||.+.+.+..+ .+..++.+.|..++. .+.+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--~g~~d~~nlLkp~L~-------~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLS-------SGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC--CcHHHHHHHHHHHHh-------CCCeEEEe
Confidence 66665 35778888889999998888888999999999998765321 123344455555543 36789999
Q ss_pred EcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCH-----HHHHHhC-----CCCcHHH
Q 014525 315 ATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF-----EELARST-----DDFNGAQ 379 (423)
Q Consensus 315 ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l-----~~la~~~-----~g~s~~d 379 (423)
+|+.++ ..|++|.| ||. .|.++.|+.+++..|++.....+....++.+ ...+..+ ..+-|..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 999764 47999999 995 8999999999999999987766555444443 2222222 2344667
Q ss_pred HHHHHHHHHHHHH----HhCCCCcCHHHHHHHHHHHH
Q 014525 380 LKAVCVEAGMLAL----RRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 380 l~~l~~~A~~~A~----~~~~~~It~~d~~~al~~~~ 412 (423)
...++.+|+.... ......|+.+|+.+.+...-
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 8888888886442 12345688899988876654
No 65
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.78 E-value=3.1e-17 Score=162.98 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=152.7
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---------CcEEEEccc
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---------ATFLKLAGP 238 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---------~~~i~v~~~ 238 (423)
..++++|.++.++.|...+...+.. ..+.+++|+||||||||++++++++.+. ..+++++|.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3457899999999999988643332 2446799999999999999999998762 578888886
Q ss_pred hhhhh----------hh--hc--------hHHHHHHHHHHHH-hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHH
Q 014525 239 QLVQM----------FI--GD--------GAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 297 (423)
Q Consensus 239 ~l~~~----------~~--g~--------~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 297 (423)
..... .. |. .......++.... ...+.||+|||+|.+... . +..+..+
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhH
Confidence 53221 11 11 1122334444443 345679999999999621 1 1244555
Q ss_pred HHhhcC-CCCCCCeEEEEEcCCCC---CCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHhhcCCCC---CCCCHHHH-
Q 014525 298 LNQLDG-FSSDDRIKVIAATNRAD---ILDPALMRSGRLD-RKIEFPHPTEEARARILQIHSRKMNVH---PDVNFEEL- 368 (423)
Q Consensus 298 l~~~~~-~~~~~~v~vI~ttn~~~---~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~---~~~~l~~l- 368 (423)
+..... .....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+...... .+..+..+
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 543111 12235788899998875 47888877 674 679999999999999999887621111 11113333
Q ss_pred --HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 369 --ARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 369 --a~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
+..+.| .++.+..+|+.|...|..++...||.+|+.+|+..+..
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 334444 56777889999999999888899999999999988854
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=5e-18 Score=182.13 Aligned_cols=204 Identities=22% Similarity=0.349 Sum_probs=148.8
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCC----CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh-
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM- 243 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~- 243 (423)
-..|+||+.+++.+...+... +.|+. |..++||+||||||||++|+++|+.++.+++.++|+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKH 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcc
Confidence 467899999999999987532 22332 33458999999999999999999999999999999987653
Q ss_pred ----hhhchHHH-----HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC------CC
Q 014525 244 ----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------DD 308 (423)
Q Consensus 244 ----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~ 308 (423)
++|...++ ...+.+.++.++++||+|||||++ ++++++.|+++++...-.+. -.
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCC
Confidence 23322211 124667777888999999999985 78899999999986532222 23
Q ss_pred CeEEEEEcCCCC-------------------------CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC------
Q 014525 309 RIKVIAATNRAD-------------------------ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM------ 357 (423)
Q Consensus 309 ~v~vI~ttn~~~-------------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~------ 357 (423)
+++||+|||... .+.|+|+. |++.+|.|.+++.++..+|++..+..+
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~ 671 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE 671 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 688999998631 26788887 999999999999999999998877532
Q ss_pred -CCC---CCCCHHHHHHh--CCCCcHHHHHHHHHHHHHHHHH
Q 014525 358 -NVH---PDVNFEELARS--TDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 358 -~~~---~~~~l~~la~~--~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
++. .+..++.|+.. ...+.++.|+.+++.-...++.
T Consensus 672 ~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~ 713 (731)
T TIGR02639 672 KNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLS 713 (731)
T ss_pred CCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHH
Confidence 111 11224556653 3345567888877776655543
No 67
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.78 E-value=5.2e-18 Score=184.00 Aligned_cols=231 Identities=19% Similarity=0.261 Sum_probs=156.3
Q ss_pred eecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCC----CCCCCceEEc
Q 014525 136 GVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV----RPPKGVLLYG 211 (423)
Q Consensus 136 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLl~G 211 (423)
.++.++..++..+......++..++ ...-+.|+||+.+++.+...+.... .|+ +|..++||+|
T Consensus 480 ~~~~~tgip~~~~~~~~~~~l~~l~-----~~L~~~v~GQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~lf~G 546 (821)
T CHL00095 480 IVSAWTGIPVNKLTKSESEKLLHME-----ETLHKRIIGQDEAVVAVSKAIRRAR--------VGLKNPNRPIASFLFSG 546 (821)
T ss_pred HHHHHHCCCchhhchhHHHHHHHHH-----HHhcCcCcChHHHHHHHHHHHHHHh--------hcccCCCCCceEEEEEC
Confidence 4555555555444433333332222 2344679999999999999885432 222 2334589999
Q ss_pred CCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-----hhhchHHH-----HHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 212 PPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 212 p~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~-----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
|||||||++|+++|+.+ +.++++++++++.+. ++|...++ ...+.+.++.++++||+|||+|++
T Consensus 547 p~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka--- 623 (821)
T CHL00095 547 PTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA--- 623 (821)
T ss_pred CCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC---
Confidence 99999999999999988 468999999887432 23322221 124677888888999999999995
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCC------CCCeEEEEEcCCCC--------------------------------
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSS------DDRIKVIAATNRAD-------------------------------- 320 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~v~vI~ttn~~~-------------------------------- 320 (423)
++++++.|+++++...-.+. ..+++||+|||...
T Consensus 624 --------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 695 (821)
T CHL00095 624 --------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVN 695 (821)
T ss_pred --------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHH
Confidence 78999999999987543222 24789999998531
Q ss_pred -----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC-------CCC---CCCCHHHHHHhC--CCCcHHHHHHH
Q 014525 321 -----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM-------NVH---PDVNFEELARST--DDFNGAQLKAV 383 (423)
Q Consensus 321 -----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~---~~~~l~~la~~~--~g~s~~dl~~l 383 (423)
.+.|+|++ |+|.+|.|.+++.++..+|+...+..+ ++. .+.....|+... ..+-++.|+.+
T Consensus 696 ~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~ 773 (821)
T CHL00095 696 EELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRA 773 (821)
T ss_pred HHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHH
Confidence 14577888 999999999999999999988776532 121 111245666642 23446777777
Q ss_pred HHHHHHHHH
Q 014525 384 CVEAGMLAL 392 (423)
Q Consensus 384 ~~~A~~~A~ 392 (423)
++.-...++
T Consensus 774 i~~~i~~~l 782 (821)
T CHL00095 774 IMRLLEDPL 782 (821)
T ss_pred HHHHHHHHH
Confidence 666554443
No 68
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-17 Score=170.55 Aligned_cols=222 Identities=45% Similarity=0.700 Sum_probs=193.0
Q ss_pred ccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEE
Q 014525 188 LPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCII 267 (423)
Q Consensus 188 ~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl 267 (423)
.++.+++.+..+++.++.+++++||||||||.++++++.. +..+..++.++...++.|..+...+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 3567788999999999999999999999999999999999 766688899999999999999999999999999999999
Q ss_pred EECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHH
Q 014525 268 FIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARA 347 (423)
Q Consensus 268 ~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 347 (423)
++|+++.+.+.+.......... ...+++..+++.. ...+++++.+|.+..+++++.+++||+..+.++.|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~---v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERR---VVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccccchhhH---HHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 9999999998886622222233 4444555555555 44488889999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHHh
Q 014525 348 RILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------ATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 348 ~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~------~~~It~~d~~~al~~~~~~ 414 (423)
+|+......+....+.+...++..+.|++++++..+|..+...+..+. ...++.+++.++++.+.++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 999999988888878899999999999999999999999999998885 3468999999999998764
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=4.5e-17 Score=165.11 Aligned_cols=207 Identities=17% Similarity=0.262 Sum_probs=142.1
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC------------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA------------ 230 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~------------ 230 (423)
..++.+|++++|++..++.+...+... ..++++||+||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 345689999999999988888766432 24457999999999999999999998864
Q ss_pred ------------cEEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 231 ------------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 231 ------------~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
.++.++.+. ..+-..++.+.+.+.. ..+.||+|||+|.+. ...+..|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHH
Confidence 233443321 1112334444444432 235799999999984 2334455
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~ 373 (423)
+..++. ..+++++|++|+.+..+++++.+ |+ .++.|++|+.++...+++..+...++. .+..+..|+..+.
T Consensus 138 Lk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 138 LKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 544443 23467777777777889999998 87 589999999999999998887654443 2234777888776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
| +.+.+.+.+..+...+ ...||.+++.+++...
T Consensus 210 G-dlR~aln~Le~l~~~~----~~~It~e~V~~~l~~~ 242 (472)
T PRK14962 210 G-GLRDALTMLEQVWKFS----EGKITLETVHEALGLI 242 (472)
T ss_pred C-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHcCC
Confidence 5 5666666666554332 2349999998887544
No 70
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=3.9e-17 Score=169.16 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=143.5
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++..++.|...+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 345689999999999999999887421 234568999999999999999999988642
Q ss_pred -------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 232 -------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 232 -------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
++.++.+. ..+...++.+.+.+.. ..+.|+||||+|.|. ...++.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHH
Confidence 22222211 1112334455554432 346799999999983 3445666
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~ 373 (423)
+..|++ ...++.||++||.+..|.+.+++ |+ ..+.|..++.++..+.++..+...++. .+..+..|++.+.
T Consensus 140 LKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 140 LKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 666654 23578889999999999999998 88 789999999999999998888765544 2234677788887
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 407 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~a 407 (423)
| +.++..+++.++..+. ...|+.+++...
T Consensus 212 G-smRdALsLLdQAia~~----~~~It~~~V~~~ 240 (830)
T PRK07003 212 G-SMRDALSLTDQAIAYS----ANEVTETAVSGM 240 (830)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCcCHHHHHHH
Confidence 6 6788888877776432 234555555443
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.75 E-value=1.5e-16 Score=159.82 Aligned_cols=224 Identities=23% Similarity=0.302 Sum_probs=152.3
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQ 242 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~ 242 (423)
..+.++|.++.++.+...+...+.. ..+.+++|+||||||||++++.+++.+ +..+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 4467889999999999987543332 234579999999999999999999887 46789998864321
Q ss_pred ----------hhhh--------chHHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC
Q 014525 243 ----------MFIG--------DGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 303 (423)
Q Consensus 243 ----------~~~g--------~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~ 303 (423)
...+ ........+...... ..+.||+|||+|.+.... .. ..+..++.....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~---~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GN---DVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------Cc---hHHHHHHHhhhc
Confidence 1111 012222333333332 346799999999986211 11 244455544333
Q ss_pred CCCCCCeEEEEEcCCCC---CCChhhhcCCCc-ceEEEcCCCCHHHHHHHHHHHhhcCC---CCCCCCHHHHHHhCCC--
Q 014525 304 FSSDDRIKVIAATNRAD---ILDPALMRSGRL-DRKIEFPHPTEEARARILQIHSRKMN---VHPDVNFEELARSTDD-- 374 (423)
Q Consensus 304 ~~~~~~v~vI~ttn~~~---~l~~~l~~~~Rf-~~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~l~~la~~~~g-- 374 (423)
.. ..++.+|+++|..+ .+++.+.+ || ...+.|++++.++..+|++..+..-. .-.+..+..+++.+.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 22 23678888888653 47777776 55 35789999999999999998875321 1122235666666532
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
...+.+..+|..|+..|..++...|+.+|+..|+..+..
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 235666788999999998888899999999999998854
No 72
>PRK06893 DNA replication initiation factor; Validated
Probab=99.75 E-value=8.8e-17 Score=149.13 Aligned_cols=213 Identities=13% Similarity=0.166 Sum_probs=137.2
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
...+..+|++++|.++.. +...+.. .+.. .....++||||||||||+|++++|+++ +....+++..
T Consensus 8 ~~~~~~~fd~f~~~~~~~--~~~~~~~------~~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL--LLDSLRK------NFID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCcccccccccCChHH--HHHHHHH------Hhhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 344567899999776432 2222211 1111 122358999999999999999999986 3344555543
Q ss_pred hhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE-EEEEcC
Q 014525 239 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK-VIAATN 317 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~-vI~ttn 317 (423)
.... ....++... ..+.+|+|||++.+.+ ....+..++.+++.... .+..+ |++++.
T Consensus 77 ~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~---~~~~illits~~ 134 (229)
T PRK06893 77 KSQY--------FSPAVLENL--EQQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE---QGKTLLLISADC 134 (229)
T ss_pred Hhhh--------hhHHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 2211 011222222 2347999999999853 33455677788876532 23333 444555
Q ss_pred CCCCCC---hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014525 318 RADILD---PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 318 ~~~~l~---~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
.|..++ +.+.++.+++..+.+++|+.+++.+|++..+...++. ++..+..|+.+..| +.+.+..++......+..
T Consensus 135 ~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 213 (229)
T PRK06893 135 SPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ 213 (229)
T ss_pred ChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh
Confidence 566654 8898855566799999999999999999777644443 22237788888875 788888888876544554
Q ss_pred hCCCCcCHHHHHHHHH
Q 014525 394 RDATEVNHEDFNEGII 409 (423)
Q Consensus 394 ~~~~~It~~d~~~al~ 409 (423)
++ ..||...+.+++.
T Consensus 214 ~~-~~it~~~v~~~L~ 228 (229)
T PRK06893 214 AQ-RKLTIPFVKEILG 228 (229)
T ss_pred cC-CCCCHHHHHHHhc
Confidence 34 4799999888764
No 73
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.75 E-value=2e-18 Score=184.57 Aligned_cols=223 Identities=19% Similarity=0.257 Sum_probs=149.0
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh------
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV------ 241 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~------ 241 (423)
.-.+..|++.+++.|.+++...... +-.++..++|+||||||||++++.+|+.++.+|++++++...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 3456899999999999877532211 112334699999999999999999999999999999866532
Q ss_pred ---hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC----------CCCCC
Q 014525 242 ---QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----------FSSDD 308 (423)
Q Consensus 242 ---~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~~ 308 (423)
..|.|...+.+.+.+..+.... .||+|||+|++.+... + +.+..|+++++.-.+ ...-+
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-----g--~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-----G--DPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-----C--CHHHHHHHHhccccEEEEecccccccccCC
Confidence 2356666666555555544344 4899999999975421 1 234678888864211 11226
Q ss_pred CeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc-----CCCC------CCCCHHHHHHh-CCCCc
Q 014525 309 RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK-----MNVH------PDVNFEELARS-TDDFN 376 (423)
Q Consensus 309 ~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~-----~~~~------~~~~l~~la~~-~~g~s 376 (423)
++++|+|+|.. .++++|++ || .+|.|++++.++..+|++.++.. .+.. .+..+..++.. +..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 89999999987 59999998 99 58899999999999999888731 1111 11114445542 33333
Q ss_pred HHHHHHHHHHHHHHHHHh----C---CCCcCHHHHHHHHH
Q 014525 377 GAQLKAVCVEAGMLALRR----D---ATEVNHEDFNEGII 409 (423)
Q Consensus 377 ~~dl~~l~~~A~~~A~~~----~---~~~It~~d~~~al~ 409 (423)
.|.++.+++..+..++.+ + ...|+.+++.+.+.
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 466666555544443332 2 23688888877665
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=7.8e-17 Score=162.34 Aligned_cols=200 Identities=26% Similarity=0.371 Sum_probs=142.8
Q ss_pred CCCCCcccccCchHHHHH---HHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 164 KPTEDYNDIGGLEKQIQE---LVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~---l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
..+.+|++++|++..+.. +...+.. ..+.+++|+||||||||++|+++|+.++..|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 345789999999998766 6666532 123479999999999999999999999999999987642
Q ss_pred hhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 241 VQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
....++.+++.+. ...+.||||||+|.+. ...+..|+..++. +.+++|++|
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~-------~~iilI~at 127 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED-------GTITLIGAT 127 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc-------CcEEEEEeC
Confidence 1123334444442 2356899999999973 3445566655542 346666654
Q ss_pred --CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC-----CCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014525 317 --NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM-----NVHPDVNFEELARSTDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 317 --n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~-----~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~ 389 (423)
|....+++++++ |+ .++.|++|+.++...+++..+... .+. +..+..++..+. .+++.+.+++..+..
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~-Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLAN-GDARRALNLLELAAL 202 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 334578999998 88 788999999999999998876542 222 223567777774 467777777777664
Q ss_pred HHHHhCCCCcCHHHHHHHHHHH
Q 014525 390 LALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 390 ~A~~~~~~~It~~d~~~al~~~ 411 (423)
. ...|+.+++..++...
T Consensus 203 ~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 203 G-----VDSITLELLEEALQKR 219 (413)
T ss_pred c-----cCCCCHHHHHHHHhhh
Confidence 3 4568999988888764
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=99.74 E-value=9.3e-17 Score=164.82 Aligned_cols=208 Identities=25% Similarity=0.337 Sum_probs=143.1
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
++..+.++++++|++.++..+..++..... | .+++++||+||||||||++|+++|++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 344567899999999999999998865432 2 2467899999999999999999999999999999988653
Q ss_pred hhhhhchHHHHHHHHHHHHh------CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 014525 242 QMFIGDGAKLVRDAFQLAKE------KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 315 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~t 315 (423)
.. ..+..+...+.. ..+.||+|||+|.+..+ .+......+..++.. .+..+|++
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~~-------~~~~iIli 136 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIKK-------AKQPIILT 136 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHHc-------CCCCEEEe
Confidence 22 112222211111 25689999999998642 122334455555542 23447778
Q ss_pred cCCCCCCCh-hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014525 316 TNRADILDP-ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 316 tn~~~~l~~-~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
+|.+..+.+ .+++ | ...+.|++|+..++..+++..+...++. .+..+..|+..+.| |++.++...... .
T Consensus 137 ~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~--a 207 (482)
T PRK04195 137 ANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAI--A 207 (482)
T ss_pred ccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH--h
Confidence 888888877 5554 4 4789999999999999999888765554 22336777776654 566666555443 3
Q ss_pred hCCCCcCHHHHHHH
Q 014525 394 RDATEVNHEDFNEG 407 (423)
Q Consensus 394 ~~~~~It~~d~~~a 407 (423)
.+...|+.+++...
T Consensus 208 ~~~~~it~~~v~~~ 221 (482)
T PRK04195 208 EGYGKLTLEDVKTL 221 (482)
T ss_pred cCCCCCcHHHHHHh
Confidence 34556777777544
No 76
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.74 E-value=9e-17 Score=163.70 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=137.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchHHH-HHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKL-VRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~~~-~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
++++||||||||||+|++++++++ +..++++++.++...+....... ...+....+ .+.+|+|||+|.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 569999999999999999999987 46688999988877654433211 112222222 4679999999998532
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHH
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLD--RKIEFPHPTEEARARILQIH 353 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~ 353 (423)
...+..++.+++.+... +..+||++...|.. +++.+.+ ||. .++.+.+|+.++|..|++..
T Consensus 227 ---------~~~~~~l~~~~n~l~~~---~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 ---------ERTQEEFFHTFNALHEA---GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred ---------HHHHHHHHHHHHHHHHC---CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 23455666766654321 23345555555544 6788888 885 58999999999999999998
Q ss_pred hhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 354 SRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 354 ~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
+...++. ++..++.|+....| +.+++..++......|...+ ..||.+.+.+++..+..
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLLA 351 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 8764443 22337788887765 78999999998887776554 45899999999998743
No 77
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.74 E-value=1.2e-16 Score=160.81 Aligned_cols=192 Identities=19% Similarity=0.271 Sum_probs=135.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchHH-HHHHHHHHHHhCCCeEEEECCchhhhc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAK-LVRDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
.++++||||||||||+|++++++++ +..++++++.++...+...... .........+ .+.+|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3569999999999999999999987 5778999998877655433211 1112222222 357999999999863
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHH
Q 014525 278 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLD--RKIEFPHPTEEARARILQI 352 (423)
Q Consensus 278 ~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~ 352 (423)
+ ...+..++.+++.+.. .+..+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 214 ~---------~~~~~~l~~~~n~~~~---~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 K---------ERTQEEFFHTFNALHE---NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred C---------HHHHHHHHHHHHHHHH---CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 2 2345667777765432 123345555545544 5678887 775 4899999999999999999
Q ss_pred HhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 353 HSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 353 ~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
.+...++. ++..+..|+....+ +.+++..++......|...+ ..||.+.+.+++.....
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhcc
Confidence 98765554 23347778887764 78999999988887775544 56888888888887643
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.1e-16 Score=164.31 Aligned_cols=204 Identities=17% Similarity=0.213 Sum_probs=145.1
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+.+|++|+|++..++.+...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 45679999999999999999987521 235678999999999999999999998652
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++.+.- .....++.+...+. ...+.|++|||+|.|. ...++.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHH
Confidence 233332211 12233444544442 2346799999999983 34456666
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g 374 (423)
..++. ....+.+|++|+.+..+.+.+++ |+ .++.|.+++.++....++..+...++.- +..+..|+..+.|
T Consensus 140 KtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 140 KTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66654 23456777777878888889887 87 6899999999999999988887665542 2346778877765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+.+++.+++..+... +...||.+++...+.
T Consensus 212 -dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 212 -SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 788888888776643 345688887766543
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=4.9e-17 Score=166.41 Aligned_cols=202 Identities=18% Similarity=0.245 Sum_probs=141.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++..++.|...+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 345689999999999999999987532 234568999999999999999999998751
Q ss_pred ------------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHH
Q 014525 232 ------------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDRE 289 (423)
Q Consensus 232 ------------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~ 289 (423)
++.++... ..+...++++.+.+. ...+.|+||||+|.|. ..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NH 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HH
Confidence 11121110 012233445554443 3446899999999983 34
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCHHHH
Q 014525 290 VQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD-VNFEEL 368 (423)
Q Consensus 290 ~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~l 368 (423)
.++.|+..|++ ...++++|++||.+..|.+.+++ |+ ..+.|+.++.++..+.++..+...++..+ ..+..|
T Consensus 140 AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 140 AFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred HHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555554443 34577888889999999999999 87 78999999999999988887765554422 235667
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 014525 369 ARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 406 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 406 (423)
+..+.| ++++..+++.++.... ...||.+++.+
T Consensus 212 A~~A~G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 777765 7888888887766432 23465554443
No 80
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.74 E-value=9.5e-17 Score=159.94 Aligned_cols=233 Identities=22% Similarity=0.266 Sum_probs=149.1
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhh---hCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-hhhh
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQK---LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIG 246 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~---~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-~~~g 246 (423)
.|+|++.+++.+..++..+......... -...+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 4899999999998777543222100000 00113468999999999999999999999999999999988764 4777
Q ss_pred chH-HHHHHHHHH----HHhCCCeEEEECCchhhhccCCCC---CCCCcHHHHHHHHHHHHhhc------C--CCCCCCe
Q 014525 247 DGA-KLVRDAFQL----AKEKSPCIIFIDEIDAIGTKRFDS---EVSGDREVQRTMLELLNQLD------G--FSSDDRI 310 (423)
Q Consensus 247 ~~~-~~~~~~~~~----a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~l~~ll~~~~------~--~~~~~~v 310 (423)
... ..+..++.. .....++||||||||.+..++.+. ...+...+|+.|+++|+... + .....++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 643 333344332 234567999999999998763211 11223468999999996321 0 1112245
Q ss_pred EEEEEcCCC------------------------------C----------------------CCChhhhcCCCcceEEEc
Q 014525 311 KVIAATNRA------------------------------D----------------------ILDPALMRSGRLDRKIEF 338 (423)
Q Consensus 311 ~vI~ttn~~------------------------------~----------------------~l~~~l~~~~Rf~~~i~~ 338 (423)
++|.|+|.. . -+.|+|+. |++.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeec
Confidence 566666540 0 04677776 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhh-------cCCCC---CCCCHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHhC-------
Q 014525 339 PHPTEEARARILQI----HSR-------KMNVH---PDVNFEELARS--TDDFNGAQLKAVCVEAGMLALRRD------- 395 (423)
Q Consensus 339 ~~p~~~~r~~Il~~----~~~-------~~~~~---~~~~l~~la~~--~~g~s~~dl~~l~~~A~~~A~~~~------- 395 (423)
.+++.++..+|+.. .++ ..++. .+..+..|++. ..++-.+.|+.+++....-...+-
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~~~ 389 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSREDVE 389 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCCCc
Confidence 99999999999872 222 12222 12235667764 334556788887777666554431
Q ss_pred CCCcCHHHHH
Q 014525 396 ATEVNHEDFN 405 (423)
Q Consensus 396 ~~~It~~d~~ 405 (423)
...||.+.+.
T Consensus 390 ~v~I~~~~v~ 399 (412)
T PRK05342 390 KVVITKEVVE 399 (412)
T ss_pred eEEECHHHhc
Confidence 1246666654
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=2.5e-16 Score=155.96 Aligned_cols=204 Identities=18% Similarity=0.229 Sum_probs=143.2
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+.+|++|+|++..++.+...+... +.++.+||+||||||||++|+++|+.+.+.
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45689999999999999998877431 234568999999999999999999988532
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++.+. ......++.+.+.+.. ..+.|++|||+|.+. ...++.++
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHH
Confidence 11111110 0122334455554432 234699999999983 23445555
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 374 (423)
..++. ...++.+|++|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+...+.. .+..+..++..+.|
T Consensus 141 k~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 141 KTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55543 23456677777778889999988 77 688999999999999999888765543 22346667777765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+++++.+++..+... +...||.+++.+++.
T Consensus 213 -~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 213 -SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred -CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 788888888877643 356788888887665
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=8.9e-17 Score=164.61 Aligned_cols=207 Identities=16% Similarity=0.175 Sum_probs=146.7
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++..++.+...+... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 345689999999999999999987431 234568999999999999999999998642
Q ss_pred -------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 232 -------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 232 -------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
++.++.+. ..+...++.+.+.+. ...+.|++|||+|.|. ...++.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHH
Confidence 33333321 112233445554443 2346799999999983 3445566
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~ 373 (423)
+..|++ ...++.+|++|+.+..+.+.+++ |+ ..+.|.+++.++....++..+...++.- +..+..|+..+.
T Consensus 140 Lk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~ 211 (509)
T PRK14958 140 LKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN 211 (509)
T ss_pred HHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 655554 23457777777888888888988 77 6788999999999888888887665542 233667777776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
| +.+++.+++..+..+ +...||.+++.+.+...
T Consensus 212 G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg~~ 244 (509)
T PRK14958 212 G-SVRDALSLLDQSIAY----GNGKVLIADVKTMLGTI 244 (509)
T ss_pred C-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCC
Confidence 4 789999999877643 34568888777665443
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=2.9e-16 Score=163.18 Aligned_cols=204 Identities=18% Similarity=0.233 Sum_probs=144.2
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+.+|++|+|++..++.+...+... +.+..+||+||+|||||++|+.+|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 45689999999999999998877531 233458999999999999999999998652
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++... ......++.+...+. ...+.|+||||+|.|. ...++.|+
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALL 140 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALL 140 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHH
Confidence 12222211 011223444444433 3456799999999983 45566777
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g 374 (423)
..|++ ..+++++|++|+.+..+.+.+++ |+ ..+.|++++.++....++..+...++.. +..+..|+..+.|
T Consensus 141 KtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 141 KTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66664 34567788888888899999998 86 8999999999999999988876555442 2336677777765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+.++..+++..|... +...|+.+++...+.
T Consensus 213 -s~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 213 -SMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 788888888776533 234467666665443
No 84
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.5e-16 Score=166.08 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=135.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE-------EEE
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-------LKL 235 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~-------i~v 235 (423)
+..+.+|++|+|++..++.+...+... +.+..+||+||||||||++|+++|+.+++.. ..+
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 345689999999999999998877431 2345579999999999999999999986531 111
Q ss_pred -ccchhhhhh------h-h---chHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHh
Q 014525 236 -AGPQLVQMF------I-G---DGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 300 (423)
Q Consensus 236 -~~~~l~~~~------~-g---~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ 300 (423)
+|-.+.... + + .....++.+...+. ...+.|+||||+|.| ..+.++.|+..|++
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtLEE 145 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTLEE 145 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHHhc
Confidence 011111000 0 0 11223444444443 244679999999998 34566676666654
Q ss_pred hcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHH
Q 014525 301 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQ 379 (423)
Q Consensus 301 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~d 379 (423)
...++++|++|+.+..+.+.+++ |+ .++.|++++.++...+++..+...++.. +..+..|+..+.| ++|+
T Consensus 146 -----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ 216 (944)
T PRK14949 146 -----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRD 216 (944)
T ss_pred -----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 34567777778888889999998 87 7899999999999999988776544432 2236777777765 7888
Q ss_pred HHHHHHHHH
Q 014525 380 LKAVCVEAG 388 (423)
Q Consensus 380 l~~l~~~A~ 388 (423)
+.++|..+.
T Consensus 217 ALnLLdQal 225 (944)
T PRK14949 217 ALSLTDQAI 225 (944)
T ss_pred HHHHHHHHH
Confidence 999988777
No 85
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.73 E-value=5.7e-16 Score=143.43 Aligned_cols=203 Identities=18% Similarity=0.266 Sum_probs=139.1
Q ss_pred CCCccccc--CchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh
Q 014525 166 TEDYNDIG--GLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 240 (423)
Q Consensus 166 ~~~~~~i~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l 240 (423)
..+|++++ +....+..+...+.. ..+.+++|+||+|||||++|+++++++ +.++++++|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 34566665 355566666665421 245689999999999999999999887 468899999887
Q ss_pred hhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC-CC
Q 014525 241 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN-RA 319 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn-~~ 319 (423)
.... ..++.... .+.+|+|||+|.+.. +.+.+..+..+++.+... +. .+|.|++ .+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~~---~~-~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVREA---GG-RLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHHc---CC-eEEEECCCCh
Confidence 6432 12233222 236999999999842 223456677777654321 22 3444554 34
Q ss_pred CCCC---hhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014525 320 DILD---PALMRSGRL--DRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 320 ~~l~---~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
..++ +.+.+ |+ ...+.+|+|+.+++..+++.+....++. ++..+..|+.. ++.+.+++.++++.+...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 3332 67776 65 4789999999999999999877654443 22236777775 667999999999998876656
Q ss_pred hCCCCcCHHHHHHHH
Q 014525 394 RDATEVNHEDFNEGI 408 (423)
Q Consensus 394 ~~~~~It~~d~~~al 408 (423)
.+ ..||.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 44 579988887765
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=6.1e-16 Score=167.38 Aligned_cols=221 Identities=22% Similarity=0.299 Sum_probs=156.7
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEE
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 234 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~ 234 (423)
.+-.++.++|++..+..+.+.+.. ....+++|+||||||||++|+.+|+.+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 346789999999998888775532 233579999999999999999999986 245777
Q ss_pred Eccchhhh--hhhhchHHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 235 LAGPQLVQ--MFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 235 v~~~~l~~--~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
++.+.+.. .+.|+.+..++.++..+.. ..+.||||||+|.+.+.+.... ..+..+.|...+. .+.+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~n~Lkp~l~-------~G~l~ 318 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG---QGDAANLLKPALA-------RGELR 318 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc---cccHHHHhhHHhh-------CCCeE
Confidence 88877653 5788888999999998865 4578999999999987553211 1122234444332 36788
Q ss_pred EEEEcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-----CCCCHHHHHHhCCCCc-----
Q 014525 312 VIAATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-----PDVNFEELARSTDDFN----- 376 (423)
Q Consensus 312 vI~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----~~~~l~~la~~~~g~s----- 376 (423)
+|+||+..+ .+|++|.| || ..|.+++|+.++...|++.+...+... .+..+..++..+.+|.
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 999998643 38999999 99 589999999999999987666543321 2334666777776654
Q ss_pred HHHHHHHHHHHHHHH-HHhCCCCcCHHHHHHHHHHH
Q 014525 377 GAQLKAVCVEAGMLA-LRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 377 ~~dl~~l~~~A~~~A-~~~~~~~It~~d~~~al~~~ 411 (423)
|...-.++.+|+... +......+..+++.+.+..+
T Consensus 396 PDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~ 431 (852)
T TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRRIAAL 431 (852)
T ss_pred ccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 344556777776544 33344556666666555444
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.72 E-value=1.1e-15 Score=142.23 Aligned_cols=208 Identities=16% Similarity=0.186 Sum_probs=135.9
Q ss_pred cCCCCCccccc-C-chHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEcc
Q 014525 163 EKPTEDYNDIG-G-LEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAG 237 (423)
Q Consensus 163 ~~~~~~~~~i~-G-~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~ 237 (423)
-.+..+|++++ | ...++..+...... ..+.+++||||||||||+|++++++++. ..+.+++.
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 34556788876 4 34455554443321 1235799999999999999999998763 44555555
Q ss_pred chhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC-eEEEEEc
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAAT 316 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~-v~vI~tt 316 (423)
...... ...+.+.... ..+|+|||++.+.. ....+..++.+++.... .++ .++++++
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGD 139 (235)
T ss_pred HHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCC
Confidence 443211 1122222222 25899999999852 34556677777766432 233 3445555
Q ss_pred CCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 317 NRADI---LDPALMRSGRLD--RKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 317 n~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
+.|.. +.|.+++ |+. .++.+.+|+.+++.++++......++. ++.-+..|+.+..| +.+.+..++......
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~ 216 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRA 216 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 55555 5799998 765 799999999999999998866554443 22237888888875 788899988886544
Q ss_pred HHHhCCCCcCHHHHHHHHH
Q 014525 391 ALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 391 A~~~~~~~It~~d~~~al~ 409 (423)
++.. ...||...+.+++.
T Consensus 217 ~l~~-~~~it~~~~k~~l~ 234 (235)
T PRK08084 217 SITA-QRKLTIPFVKEILK 234 (235)
T ss_pred HHhc-CCCCCHHHHHHHHc
Confidence 4443 35599988888763
No 88
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.71 E-value=9.6e-16 Score=150.52 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=139.1
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-----CcEEEEcc
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAG 237 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-----~~~i~v~~ 237 (423)
+..+.+|++++|++.+++.+...+... ...+++|+||||||||++|+++++++. .+++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345678999999999999988876421 123699999999999999999999883 35788888
Q ss_pred chhhhhh-------------hhc-------hHHHHHHHHHHHHh-----CCCeEEEECCchhhhccCCCCCCCCcHHHHH
Q 014525 238 PQLVQMF-------------IGD-------GAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQR 292 (423)
Q Consensus 238 ~~l~~~~-------------~g~-------~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 292 (423)
+++.... .+. ....++.+...... ..+.+|+|||+|.+. ...+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHH
Confidence 7764321 010 01112222222212 234699999999873 34455
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHh
Q 014525 293 TMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARS 371 (423)
Q Consensus 293 ~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~ 371 (423)
.|..+++... .++.+|++++.+..+.+.+.+ |+ ..+.|++|+.++...+++..+...++. ++..+..|+..
T Consensus 144 ~L~~~le~~~-----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 144 ALRRIMEQYS-----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred HHHHHHHhcc-----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6666665421 234456666666677788877 76 678999999999999999888766554 23346778877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
+. .+.+.+.+.+.. .+ .....||.+++.+++..
T Consensus 216 ~~-gdlr~l~~~l~~---~~--~~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 216 AG-GDLRKAILTLQT---AA--LAAGEITMEAAYEALGD 248 (337)
T ss_pred cC-CCHHHHHHHHHH---HH--HcCCCCCHHHHHHHhCC
Confidence 74 355555554443 23 22347999988887654
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=5.8e-16 Score=157.69 Aligned_cols=216 Identities=18% Similarity=0.234 Sum_probs=150.0
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEE---------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFL--------- 233 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i--------- 233 (423)
+..+.+|++++|++..++.+...+... +.+.++||+||||||||++|+++|+.+++...
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 345689999999999999998876431 24568999999999999999999999865211
Q ss_pred --E-Eccchhhhh----h------hhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHH
Q 014525 234 --K-LAGPQLVQM----F------IGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 296 (423)
Q Consensus 234 --~-v~~~~l~~~----~------~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 296 (423)
. -+|..+... + ...+...++.+++.+.. ..+.|++|||+|.+. ...++.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHHHHHH
Confidence 0 011111111 0 01123455666666653 345799999999983 233445554
Q ss_pred HHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCC
Q 014525 297 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDF 375 (423)
Q Consensus 297 ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~ 375 (423)
.++. ....+++|++|+.++.+.+.+.+ |+ ..+.|++++.++...+++..+...+..- +..+..|+..+.|
T Consensus 151 ~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G- 221 (507)
T PRK06645 151 TLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG- 221 (507)
T ss_pred HHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 4443 34567777777878889999988 77 6889999999999999999887666542 2346778887765
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 376 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 376 s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
+.+++.+++..+..++-. ....||.+++.+.+...
T Consensus 222 slR~al~~Ldkai~~~~~-~~~~It~~~V~~llg~~ 256 (507)
T PRK06645 222 SARDAVSILDQAASMSAK-SDNIISPQVINQMLGLV 256 (507)
T ss_pred CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHCCC
Confidence 889999999888755421 23368888877765444
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=3.2e-16 Score=162.25 Aligned_cols=213 Identities=21% Similarity=0.220 Sum_probs=147.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE-------EEE
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-------LKL 235 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~-------i~v 235 (423)
+..+.+|++|+|++..++.|...+... +.+..+||+||+|||||++|+++|+.+++.- -.+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 345689999999999999999987531 2456799999999999999999999875431 100
Q ss_pred c-cch-----hhhh-----hhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHh
Q 014525 236 A-GPQ-----LVQM-----FIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 300 (423)
Q Consensus 236 ~-~~~-----l~~~-----~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ 300 (423)
. |.. +... ..+.+...++.++..+.. ..+.|+||||+|.+. ...++.|+..|+.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLKtLEE 145 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLKTLEE 145 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHHHHHh
Confidence 0 100 0000 001123345556554432 345799999999873 3344555555553
Q ss_pred hcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHH
Q 014525 301 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQ 379 (423)
Q Consensus 301 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~d 379 (423)
...++.+|++|+.+..+.+.+++ |+ ..+.|++++.++....++..+...++.- +..+..|+..+.| +.++
T Consensus 146 -----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRd 216 (709)
T PRK08691 146 -----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRD 216 (709)
T ss_pred -----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHH
Confidence 23466778888888899999987 87 6788999999999999998888766542 2336778887764 7899
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 380 LKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 380 l~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
+.+++..+..+ +...|+.+++...+...
T Consensus 217 AlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 217 ALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 99999887754 24468888777765544
No 91
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.71 E-value=8.1e-16 Score=160.09 Aligned_cols=220 Identities=19% Similarity=0.249 Sum_probs=149.7
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEEccc
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAGP 238 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v~~~ 238 (423)
-+.|+|.++.++.|...+...+.. -.+++.++|+|+||||||.+++.+.+++ ...+++|+|.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 368999999999999988765542 1233345799999999999999998876 2567899995
Q ss_pred hhhhhh----------hh-------chHHHHHHHHHHHH--hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 239 QLVQMF----------IG-------DGAKLVRDAFQLAK--EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 239 ~l~~~~----------~g-------~~~~~~~~~~~~a~--~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
.+...+ .+ .....+..+|.... .....||+|||||.|..+ .+..|+.+++
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHH
Confidence 432221 01 11233445555442 233569999999999642 2456777877
Q ss_pred hhcCCCCCCCeEEEEEcCC---CCCCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHhhcCC-CCCCCCHHHHHHhCCC
Q 014525 300 QLDGFSSDDRIKVIAATNR---ADILDPALMRSGRLDR-KIEFPHPTEEARARILQIHSRKMN-VHPDVNFEELARSTDD 374 (423)
Q Consensus 300 ~~~~~~~~~~v~vI~ttn~---~~~l~~~l~~~~Rf~~-~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~~~g 374 (423)
... .....+.||+.+|. +..++|.+.+ ||.. .+.|++++.+++.+||+..+.... +-.+..+..+|+....
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 543 23457889999985 5567788887 6654 588999999999999999887542 1122235566664332
Q ss_pred --CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 375 --FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 375 --~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
...|..-.+|+.|+.. +....|+.+|+.+|+..+...
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhh
Confidence 2345555577777754 345689999999999887553
No 92
>PLN03025 replication factor C subunit; Provisional
Probab=99.71 E-value=8.9e-16 Score=149.59 Aligned_cols=200 Identities=19% Similarity=0.203 Sum_probs=134.6
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-----CcEEEEcc
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAG 237 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-----~~~i~v~~ 237 (423)
+..+.+|++++|++.++..+...+... ...++||+||||||||++|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 345678999999999999888765321 123699999999999999999999973 24666666
Q ss_pred chhhhhhhhchHHHHHHHHHH-HH------hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCe
Q 014525 238 PQLVQMFIGDGAKLVRDAFQL-AK------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI 310 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~-a~------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v 310 (423)
++..+. ..++..... +. ...+.|++|||+|.+. ...++.|...++.. ...+
T Consensus 73 sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~-----~~~t 130 (319)
T PLN03025 73 SDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIY-----SNTT 130 (319)
T ss_pred cccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhcc-----cCCc
Confidence 543211 112222211 11 1245799999999984 34566776666532 2345
Q ss_pred EEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014525 311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 311 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~ 389 (423)
.+|.++|....+.+++++ |+ ..+.|++|+.++....++..+...++. .+..+..++..+.| +.+.+.+.++.+.
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~~- 205 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQATH- 205 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-
Confidence 577788888889899998 76 589999999999999998887765544 23346777777654 5555555555222
Q ss_pred HHHHhCCCCcCHHHHHH
Q 014525 390 LALRRDATEVNHEDFNE 406 (423)
Q Consensus 390 ~A~~~~~~~It~~d~~~ 406 (423)
. +...||.+++.+
T Consensus 206 --~--~~~~i~~~~v~~ 218 (319)
T PLN03025 206 --S--GFGFVNQENVFK 218 (319)
T ss_pred --h--cCCCCCHHHHHH
Confidence 1 234577666654
No 93
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.70 E-value=3.9e-16 Score=154.77 Aligned_cols=223 Identities=22% Similarity=0.281 Sum_probs=145.8
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhh----hCC-CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-h
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQK----LGV-RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-M 243 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~----~g~-~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-~ 243 (423)
+.|+|++.+++.+..++............ .++ ....++||+||||||||++|+++|..++.+|..++++.+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 45899999999998877432222100000 001 12357999999999999999999999999999999887753 4
Q ss_pred hhhch-HHHHHHHHHH----HHhCCCeEEEECCchhhhccCCCCC---CCCcHHHHHHHHHHHHhhc--------CCCCC
Q 014525 244 FIGDG-AKLVRDAFQL----AKEKSPCIIFIDEIDAIGTKRFDSE---VSGDREVQRTMLELLNQLD--------GFSSD 307 (423)
Q Consensus 244 ~~g~~-~~~~~~~~~~----a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~l~~ll~~~~--------~~~~~ 307 (423)
|+|.. +..+..++.. .....++||||||||++.+++.+.. ......+|+.|+++|+..- ...+.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 77764 3333333332 2334678999999999987542211 1123468999999995211 01112
Q ss_pred CCeEEEEEcCCC---------------------------C-----------------------CCChhhhcCCCcceEEE
Q 014525 308 DRIKVIAATNRA---------------------------D-----------------------ILDPALMRSGRLDRKIE 337 (423)
Q Consensus 308 ~~v~vI~ttn~~---------------------------~-----------------------~l~~~l~~~~Rf~~~i~ 337 (423)
.++++|.|+|.. + .+.|+|+. |++.++.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEee
Confidence 367788888750 0 04467776 9999999
Q ss_pred cCCCCHHHHHHHHHHH----hhc----C---CCC---CCCCHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHh
Q 014525 338 FPHPTEEARARILQIH----SRK----M---NVH---PDVNFEELARS--TDDFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 338 ~~~p~~~~r~~Il~~~----~~~----~---~~~---~~~~l~~la~~--~~g~s~~dl~~l~~~A~~~A~~~ 394 (423)
|.+++.++..+|+... +++ + ++. .+..+..|+.. ...+-++.|+.+++.....+..+
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 9999999999998652 221 1 222 12225667765 33455688888888877766554
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=9.4e-16 Score=155.02 Aligned_cols=204 Identities=15% Similarity=0.248 Sum_probs=147.1
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA------------- 230 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~------------- 230 (423)
..+.+|++++|++..++.+...+... +.+.++||+||+|||||++|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 35689999999999999988876431 34568999999999999999999997643
Q ss_pred -----------cEEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 231 -----------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 231 -----------~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
.++.++++.. .+...++.+.+.+.. ..+.|++|||+|.|. ...++.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHH
Confidence 2334443311 123445666665543 345799999999983 33445555
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 374 (423)
..+++ ....+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++....+...+...+.. .+..+..|+..+.|
T Consensus 138 K~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 138 KTLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55543 23457777777878889999998 77 678999999999999998888765554 23346778887765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+.+++.+++..+..++ ...||.+++.+.+.
T Consensus 210 -slR~alslLdqli~y~----~~~It~e~V~~llg 239 (491)
T PRK14964 210 -SMRNALFLLEQAAIYS----NNKISEKSVRDLLG 239 (491)
T ss_pred -CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 8889999988877543 24788888877643
No 95
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.70 E-value=2.3e-15 Score=139.56 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=137.4
Q ss_pred CCCCCccccc--CchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 164 KPTEDYNDIG--GLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 164 ~~~~~~~~i~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
.++.+|++++ +.+.++..+...+. +.....+++|+||+|||||+||+++++++ +.+++.+++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456788866 33455555544332 12345689999999999999999999976 6688888887
Q ss_pred hhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 239 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
.+.... . ....+.+|+|||+|.+. ...+..+..+++.... .+..++|++++.
T Consensus 80 ~~~~~~------------~--~~~~~~~liiDdi~~l~-----------~~~~~~L~~~~~~~~~---~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLAF------------D--FDPEAELYAVDDVERLD-----------DAQQIALFNLFNRVRA---HGQGALLVAGPA 131 (227)
T ss_pred HhHHHH------------h--hcccCCEEEEeChhhcC-----------chHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 654221 1 12235799999999873 2345667777765432 233334555543
Q ss_pred -CC--CCChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 014525 319 -AD--ILDPALMRSGRL--DRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLAL 392 (423)
Q Consensus 319 -~~--~l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~ 392 (423)
+. .+.+.+.+ || ...+.+|+|+.+++..++.......++.- +..+..|+. .++.+.+++..+++.....|.
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~-~~~gn~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLT-HFRRDMPSLMALLDALDRYSL 208 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-hccCCHHHHHHHHHHHHHHHH
Confidence 21 35677877 66 57999999999988889887766554442 223677777 455689999999998666554
Q ss_pred HhCCCCcCHHHHHHHHH
Q 014525 393 RRDATEVNHEDFNEGII 409 (423)
Q Consensus 393 ~~~~~~It~~d~~~al~ 409 (423)
..+ ..||...+.+++.
T Consensus 209 ~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQK-RPVTLPLLREMLA 224 (227)
T ss_pred HhC-CCCCHHHHHHHHh
Confidence 444 6899999988875
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=7.3e-16 Score=159.83 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=143.4
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++..++.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 345679999999999999999977532 234568999999999999999999998641
Q ss_pred ------------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHH
Q 014525 232 ------------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDRE 289 (423)
Q Consensus 232 ------------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~ 289 (423)
++.++... ..+...++.+.+.+.. ..+.|++|||+|.|. ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~ 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NT 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HH
Confidence 11111110 1122345555555443 235799999999984 33
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHH
Q 014525 290 VQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEEL 368 (423)
Q Consensus 290 ~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~l 368 (423)
.++.|+..+++ ....+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++....++..+...++.- +..+..|
T Consensus 140 a~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~L 211 (618)
T PRK14951 140 AFNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLL 211 (618)
T ss_pred HHHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555444433 33566777777778888888888 77 7899999999999999988887666542 2336778
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 369 ARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+..+.| +.+++.+++..+... +...||.+++.+.+.
T Consensus 212 a~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~Lg 247 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQMLG 247 (618)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 887775 788888888776644 244688777766543
No 97
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.70 E-value=4.7e-16 Score=152.15 Aligned_cols=243 Identities=26% Similarity=0.331 Sum_probs=160.2
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhh-CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-hhhh-
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKL-GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIG- 246 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~-g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-~~~g- 246 (423)
.-|+|++++++.+..++........+...+ .-.+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|.|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 348999999999988876532221111111 1124689999999999999999999999999999999887764 4655
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 014525 247 DGAKLVRDAFQLA------------------------------------------------------------------- 259 (423)
Q Consensus 247 ~~~~~~~~~~~~a------------------------------------------------------------------- 259 (423)
..+..++.+|+.+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 3344444443333
Q ss_pred ------------------------------------------------------------------------HhCCCeEE
Q 014525 260 ------------------------------------------------------------------------KEKSPCII 267 (423)
Q Consensus 260 ------------------------------------------------------------------------~~~~~~vl 267 (423)
+....+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 01235799
Q ss_pred EECCchhhhccCCCC-CCCCcHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEcC----CCCCCChhhhcCCCcceEEE
Q 014525 268 FIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLD-----GFSSDDRIKVIAATN----RADILDPALMRSGRLDRKIE 337 (423)
Q Consensus 268 ~iDEid~l~~~r~~~-~~~~~~~~~~~l~~ll~~~~-----~~~~~~~v~vI~ttn----~~~~l~~~l~~~~Rf~~~i~ 337 (423)
||||||+++.+..+. ...+...+|+.|+.+++.-. +.-...++++|++.- .|+.|-|+|.- ||+.++.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 329 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVE 329 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999999765322 22234458888888875311 112235788887753 46778899985 9999999
Q ss_pred cCCCCHHHHHHHHH----HHh-------hcCCCC---CCCCHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHhC-
Q 014525 338 FPHPTEEARARILQ----IHS-------RKMNVH---PDVNFEELARST-------DDFNGAQLKAVCVEAGMLALRRD- 395 (423)
Q Consensus 338 ~~~p~~~~r~~Il~----~~~-------~~~~~~---~~~~l~~la~~~-------~g~s~~dl~~l~~~A~~~A~~~~- 395 (423)
+.+++.++...||. ... ...++. .+..+..||... .+.-.+-|+.++......+....
T Consensus 330 L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p 409 (441)
T TIGR00390 330 LQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAP 409 (441)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCC
Confidence 99999999999872 122 222222 223356666543 34445677777776665543332
Q ss_pred -----CCCcCHHHHHHHHHHHHHh
Q 014525 396 -----ATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 396 -----~~~It~~d~~~al~~~~~~ 414 (423)
...||.+.+...+..+...
T Consensus 410 ~~~~~~v~I~~~~V~~~l~~~~~~ 433 (441)
T TIGR00390 410 DLSGQNITIDADYVSKKLGALVAD 433 (441)
T ss_pred CCCCCEEEECHHHHHhHHHHHHhc
Confidence 2368888888888877553
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.69 E-value=1.3e-15 Score=148.45 Aligned_cols=160 Identities=21% Similarity=0.259 Sum_probs=115.4
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
++..+.+|++++|++..++.+...+.. | ..|+.+||+||||+|||++|++++++++.+++.+++++
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 344568999999999999999988752 1 23456777999999999999999999999999999876
Q ss_pred hhhhhchHHHHHHHHHHHH-hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 320 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~ 320 (423)
.. .......+........ ...+.||+|||+|.+. ..+.+..+..+++.. ..++.+|+|+|.+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIITANNKN 142 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEEcCChh
Confidence 11 1111111222111111 1356899999999873 234556666666542 24567888999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh
Q 014525 321 ILDPALMRSGRLDRKIEFPHPTEEARARILQIHS 354 (423)
Q Consensus 321 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 354 (423)
.+.+++++ || ..+.|+.|+.+++..+++.+.
T Consensus 143 ~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 143 GIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHH
Confidence 99999998 88 478999999999988776543
No 99
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.4e-15 Score=155.81 Aligned_cols=205 Identities=16% Similarity=0.254 Sum_probs=141.8
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA------------- 230 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~------------- 230 (423)
..+.+|++++|++.+++.+...+... +.+..+||+||+|||||++|+.+|+.+.+
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 35578999999999999998877431 23456899999999999999999998854
Q ss_pred -----------cEEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 231 -----------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 231 -----------~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
.++.++... .. +...++.+.+.+. ...+.|++|||+|.+. ...++.|+
T Consensus 78 sC~~i~~~~~~dlieidaas----~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS----RT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeeccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHH
Confidence 122222211 01 1122334444333 2346799999999983 34566666
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g 374 (423)
..+++ ..+.+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++....++..+...++.- +..+..|+..+.
T Consensus 141 K~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~- 211 (546)
T PRK14957 141 KTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK- 211 (546)
T ss_pred HHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 66664 23456666666668888888888 77 7999999999999988888777655542 233567777775
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
.+.+++.+++..+...+ ...|+.+++.+++..
T Consensus 212 GdlR~alnlLek~i~~~----~~~It~~~V~~~l~~ 243 (546)
T PRK14957 212 GSLRDALSLLDQAISFC----GGELKQAQIKQMLGI 243 (546)
T ss_pred CCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHcc
Confidence 47888888888777443 256888887775443
No 100
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.69 E-value=8.3e-16 Score=150.54 Aligned_cols=243 Identities=25% Similarity=0.330 Sum_probs=160.2
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhC-CCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-hhhh-
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLG-VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIG- 246 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-~~~g- 246 (423)
..|+|++.+++.+..++........+..... -..|+++||+||||||||++|+++|..++.+|+.++++++.+ .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4489999999999988754222111100000 012578999999999999999999999999999999998875 5766
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 014525 247 DGAKLVRDAFQLA------------------------------------------------------------------- 259 (423)
Q Consensus 247 ~~~~~~~~~~~~a------------------------------------------------------------------- 259 (423)
..+..++.++..+
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 3344444444443
Q ss_pred ----------------------------------------------------------------------H-hCCCeEEE
Q 014525 260 ----------------------------------------------------------------------K-EKSPCIIF 268 (423)
Q Consensus 260 ----------------------------------------------------------------------~-~~~~~vl~ 268 (423)
. ....+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 01347999
Q ss_pred ECCchhhhccCCCC-CCCCcHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEcC----CCCCCChhhhcCCCcceEEEc
Q 014525 269 IDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLD-----GFSSDDRIKVIAATN----RADILDPALMRSGRLDRKIEF 338 (423)
Q Consensus 269 iDEid~l~~~r~~~-~~~~~~~~~~~l~~ll~~~~-----~~~~~~~v~vI~ttn----~~~~l~~~l~~~~Rf~~~i~~ 338 (423)
|||||+++.+..++ ...+...+|+.|+.+++.-. +.-...++++|++.- .|+.|-|+|.. ||+.++.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999999764322 22233458888888875311 112235788887753 46778899986 99999999
Q ss_pred CCCCHHHHHHHHH----HHh-------hcCCCC---CCCCHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHhC--
Q 014525 339 PHPTEEARARILQ----IHS-------RKMNVH---PDVNFEELARST-------DDFNGAQLKAVCVEAGMLALRRD-- 395 (423)
Q Consensus 339 ~~p~~~~r~~Il~----~~~-------~~~~~~---~~~~l~~la~~~-------~g~s~~dl~~l~~~A~~~A~~~~-- 395 (423)
.+++.++...||. ... ...++. .+..+..||+.. .+.-.+-|+.++......+....
T Consensus 333 ~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 333 DALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPD 412 (443)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCC
Confidence 9999999999882 222 222222 223366666543 23335677777777665554321
Q ss_pred ----CCCcCHHHHHHHHHHHHHh
Q 014525 396 ----ATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 396 ----~~~It~~d~~~al~~~~~~ 414 (423)
...||.+.+...+..+...
T Consensus 413 ~~~~~v~I~~~~V~~~l~~l~~~ 435 (443)
T PRK05201 413 MSGETVTIDAAYVDEKLGDLVKD 435 (443)
T ss_pred CCCCEEEECHHHHHHHHHHHHhc
Confidence 2368888888888777543
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.8e-15 Score=156.42 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=141.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++..++.+...+... +.++.+||+||+|||||++|+++|+.+.+.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 345689999999999999999987531 234458999999999999999999987642
Q ss_pred ---------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHH
Q 014525 232 ---------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQR 292 (423)
Q Consensus 232 ---------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 292 (423)
++.++++.. .+-..++.+.+.+. ...+.|++|||+|.|. ...++
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHH
Confidence 112222110 01233344433332 2446799999999983 34556
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHh
Q 014525 293 TMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARS 371 (423)
Q Consensus 293 ~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~ 371 (423)
.|+..|++ ...++++|++|+.+..+.+.+++ |. .++.|.+++.++..+.+...+...++.- +..+..++..
T Consensus 137 ALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~ 208 (584)
T PRK14952 137 ALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66666554 33467777777888899999998 75 7899999999999999988887665442 2234556665
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
.. .+.+++.+++..+...+ +...||.+++...+
T Consensus 209 s~-GdlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 209 GG-GSPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred cC-CCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 54 57888888888876432 24467776665543
No 102
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.68 E-value=1.4e-15 Score=144.03 Aligned_cols=190 Identities=24% Similarity=0.305 Sum_probs=127.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch------hhhhhhhchHHH-HH--------------------HHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ------LVQMFIGDGAKL-VR--------------------DAF 256 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~------l~~~~~g~~~~~-~~--------------------~~~ 256 (423)
+.++||+||||||||++|+++|..++.+++.++|.. +++.+.+..... .. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 457999999999999999999999999999998753 333332221111 00 111
Q ss_pred HHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc----CC-------CCCCCeEEEEEcCCCC-----
Q 014525 257 QLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD----GF-------SSDDRIKVIAATNRAD----- 320 (423)
Q Consensus 257 ~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~----~~-------~~~~~v~vI~ttn~~~----- 320 (423)
. +.. .+++|+||||+.+ +++++..|+.+++... +. ..+.++.||+|+|+..
T Consensus 101 ~-A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 L-AVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred H-HHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 1 112 2469999999995 6788999999887532 10 1224778999999763
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHH---HHh---CC-CCcHHHHHHHHHHHHHHHHH
Q 014525 321 ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEEL---ARS---TD-DFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 321 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~l---a~~---~~-g~s~~dl~~l~~~A~~~A~~ 393 (423)
.+++++++ || ..+.++.|+.++..+|++.++. .... ....+ +.. .. ...++ ++.++..|...+..
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQ 239 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHc
Confidence 57899998 98 6889999999999999988752 2211 11222 111 11 11111 44555555555555
Q ss_pred hCCCCcCHHHHHHHHHHHHHh
Q 014525 394 RDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 394 ~~~~~It~~d~~~al~~~~~~ 414 (423)
.....++.+||.+.+..+..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 240 DIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred CCCCCCCcHHHHHHHHHHhcc
Confidence 567889999999999888765
No 103
>PRK08727 hypothetical protein; Validated
Probab=99.68 E-value=4.9e-15 Score=137.76 Aligned_cols=179 Identities=22% Similarity=0.259 Sum_probs=122.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 281 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~ 281 (423)
..++|+||+|||||+|++++++++ +...++++..++... ....+.... .+.+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~--- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQ--- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCC---
Confidence 459999999999999999998875 556667776554322 222333332 3469999999988532
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC-CCCCC---ChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHhh
Q 014525 282 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN-RADIL---DPALMRSGRL--DRKIEFPHPTEEARARILQIHSR 355 (423)
Q Consensus 282 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn-~~~~l---~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~~~ 355 (423)
+..+..++.+++..... +..+|+|+| .|..+ .+++.+ || ..++.+++|+.+++..|++.++.
T Consensus 109 ------~~~~~~lf~l~n~~~~~----~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 109 ------REDEVALFDFHNRARAA----GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred ------hHHHHHHHHHHHHHHHc----CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 33455677777765321 233555554 56554 789998 76 56889999999999999998665
Q ss_pred cCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 356 KMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 356 ~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
..++. ++..+..|+..+.| ..+.+.+++......+...+ ..||...+.+.+..
T Consensus 177 ~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 177 RRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 43333 22237788888774 56677777777665555544 47999998887754
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=2.2e-15 Score=152.39 Aligned_cols=191 Identities=17% Similarity=0.256 Sum_probs=132.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchH-HHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGA-KLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~-~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
++++||||||+|||+|++++++++ +..++++++.+++..+..... +.... |....+..+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 457888999888776543321 11222 22223345789999999988532
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHH
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRL--DRKIEFPHPTEEARARILQIH 353 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~ 353 (423)
...+..++.+++.+.. .+..+||++...|.. +.+.+.+ || ..++.+.+|+.+.|..|++..
T Consensus 210 ---------~~~q~elf~~~n~l~~---~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 ---------TGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred ---------HHHHHHHHHHHHHHHH---cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 2344556666655432 133445555455554 4567777 66 458899999999999999988
Q ss_pred hhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 014525 354 SRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 354 ~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~ 412 (423)
+...++. ++..+..|+....| +.++|..++......+...+ ..||.+...++++.+.
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 8654433 22237778887765 78999999888877665544 5688888888888764
No 105
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.7e-15 Score=144.26 Aligned_cols=218 Identities=21% Similarity=0.351 Sum_probs=155.9
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----EEEEccchhhhhh-
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT-----FLKLAGPQLVQMF- 244 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~-----~i~v~~~~l~~~~- 244 (423)
.+.+.++++..+...+...+.. ..|.++++|||||||||.+++.+++++..+ ++++||..+-+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3889999999999987665554 345579999999999999999999998433 8999997654332
Q ss_pred --------------hhch-HHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC
Q 014525 245 --------------IGDG-AKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDD 308 (423)
Q Consensus 245 --------------~g~~-~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 308 (423)
.|.. ......+++.... ....||+|||+|.|..+. . ..|+.++...... ..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-------~----~~LY~L~r~~~~~--~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-------G----EVLYSLLRAPGEN--KV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-------c----hHHHHHHhhcccc--ce
Confidence 1111 1222333333333 456789999999997543 1 5777777654443 56
Q ss_pred CeEEEEEcCCC---CCCChhhhcCCCc-ceEEEcCCCCHHHHHHHHHHHhhcCCCCC---CCCHHHHH---HhCCCCcHH
Q 014525 309 RIKVIAATNRA---DILDPALMRSGRL-DRKIEFPHPTEEARARILQIHSRKMNVHP---DVNFEELA---RSTDDFNGA 378 (423)
Q Consensus 309 ~v~vI~ttn~~---~~l~~~l~~~~Rf-~~~i~~~~p~~~~r~~Il~~~~~~~~~~~---~~~l~~la---~~~~g~s~~ 378 (423)
++.+|+.+|.. +.++|.+.+ ++ ...|.||+++.++...|++.......... +..+..+| ....| ..+
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR 232 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DAR 232 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHH
Confidence 78899999865 458888887 44 34689999999999999998876432221 11133333 33343 566
Q ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 379 QLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 379 dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
-.-.+|+.|+..|.+++...|+.+++.+|...+..
T Consensus 233 ~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 233 KAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 66679999999999999999999999999666554
No 106
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.7e-15 Score=153.44 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=141.5
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++.++..+...+... ..+..+||+||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 345689999999999999998887531 234557999999999999999999988531
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++.+. ......++.+.+.+.. ..+.||+|||+|.+. ...++.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 33333221 1112334444443332 346799999999863 23334444
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 374 (423)
..++. ...++++|++++.+..+.+.+.+ |+ ..+.|++|+.++....++..+...++. .+..+..|+..+.|
T Consensus 138 k~LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 138 KTLEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 44332 23466777788888899999988 76 589999999999999999888766654 22346777777765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
+.+.+.++++.+... ...||.+++.+.+..
T Consensus 210 -dlR~aln~Lekl~~~-----~~~It~~~V~~~l~~ 239 (504)
T PRK14963 210 -AMRDAESLLERLLAL-----GTPVTRKQVEEALGL 239 (504)
T ss_pred -CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHCC
Confidence 677888888776432 346888887776443
No 107
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=3e-15 Score=155.38 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=143.5
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++++|++..++.+...+... +.++.+||+||+|||||++|+.+|+.+.+.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 346689999999999999999987531 245569999999999999999999987532
Q ss_pred -------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 232 -------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 232 -------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
++.++++. +.+...++.+.+.+.. ..+.|++|||+|.|. ...++.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHH
Confidence 22222211 1223445566665543 346799999999983 2334444
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~ 373 (423)
+..++ . ...++++|++|+.+..+.+.+++ |+ ..+.|++|+.++....++..+...++.- +..+..++..+.
T Consensus 140 LKtLE---e--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 140 LKTLE---E--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHhc---C--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 44443 2 23466777777778899999998 77 5788999999999999998887666542 233667777776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
| +.+++.+++..+...+ ...||.+++.+.+
T Consensus 212 G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 212 G-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 5 7888888888776542 3467777665543
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=99.68 E-value=6.3e-15 Score=137.07 Aligned_cols=180 Identities=16% Similarity=0.224 Sum_probs=125.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 280 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~ 280 (423)
.+.++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..... .+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcC---
Confidence 3579999999999999999999865 5678888888776431 1223333332 5899999998753
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHhh
Q 014525 281 DSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRL--DRKIEFPHPTEEARARILQIHSR 355 (423)
Q Consensus 281 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~~~ 355 (423)
.+..+..++.+++... ..+..++++++..|.. ..|.+.+ || ..++.+.+|+.+++..+++....
T Consensus 112 ------~~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 112 ------KADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ------ChHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 3345667888887643 2234556666555544 3688888 77 46788899999999999996665
Q ss_pred cCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 356 KMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 356 ~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
..++. ++..++.|+....+ +++.+..++......++.. +..||..-+++++.
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~-~~~it~~~~~~~L~ 233 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA-QRKLTIPFLKETLG 233 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHhc
Confidence 44332 22336778887774 7888999888776655443 35689888887764
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.2e-15 Score=157.17 Aligned_cols=204 Identities=18% Similarity=0.236 Sum_probs=142.6
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+.+|++|+|++..++.+...+... +.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45579999999999999999887531 234568999999999999999999998652
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++.+. ......++.+.+.+.. ..+.|++|||+|.+. ...++.|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHH
Confidence 11111110 1122345556555543 335799999999983 33445555
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g 374 (423)
..+++ ...++.+|++|+.+..+.+.+++ |+ ..+.|++++.++....+...+...++.. +..+..|+..+.|
T Consensus 141 K~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 141 KTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55543 33566777777778888888887 76 7899999999999988888776555442 2235667777654
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+.+++.+++..+... +...|+.+++...+.
T Consensus 213 -slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 213 -SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 788888988887644 355688887776654
No 110
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=5.7e-15 Score=151.65 Aligned_cols=191 Identities=17% Similarity=0.243 Sum_probs=137.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
+.++|||++|+|||+|++++++++ +..++++++.+|+..+...........|.... ..+.+|+||||+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~g-- 391 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLED-- 391 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccC--
Confidence 359999999999999999999986 46789999998887765443222222333222 2358999999999863
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC-CC---CCChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHH
Q 014525 280 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR-AD---ILDPALMRSGRL--DRKIEFPHPTEEARARILQIH 353 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~-~~---~l~~~l~~~~Rf--~~~i~~~~p~~~~r~~Il~~~ 353 (423)
....+..|+.+++.+... +.. ||.|+|. |. .+++.|.+ || ..++.+.+|+.+.|..||+.+
T Consensus 392 -------ke~tqeeLF~l~N~l~e~---gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 392 -------KESTQEEFFHTFNTLHNA---NKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred -------CHHHHHHHHHHHHHHHhc---CCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 234556777777765432 222 4456664 33 47889998 76 558899999999999999998
Q ss_pred hhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 354 SRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 354 ~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
+...++.- +.-+..|+....+ +.++|..++......+...+ ..||.+.+.++++.+..
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 87665552 2236778887764 78899999888877665544 55888888888887654
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.67 E-value=1.1e-15 Score=165.87 Aligned_cols=169 Identities=21% Similarity=0.326 Sum_probs=131.8
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEE
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 234 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~ 234 (423)
.+-.++.++|++..+..+.+.+.. ...++++|+||||||||++|+++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 345788999999998888886532 234579999999999999999999987 678889
Q ss_pred Eccchhh--hhhhhchHHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 235 LAGPQLV--QMFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 235 v~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
++++.++ .+|.|..+..++.++..+.. ..+.||||||+|.+.+.+... +..+.++.|...+ ..+.+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~~~~lkp~l-------~~g~l~ 309 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL-------ARGELH 309 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhHHHHhcchh-------hcCCCe
Confidence 9888876 45788888899999987644 567899999999998654321 2234455554444 346788
Q ss_pred EEEEcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCC
Q 014525 312 VIAATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV 359 (423)
Q Consensus 312 vI~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 359 (423)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.....+..
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 999999776 38999999 996 5789999999999999877665443
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=1.6e-15 Score=150.50 Aligned_cols=184 Identities=22% Similarity=0.306 Sum_probs=124.2
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE--------------
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-------------- 232 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~-------------- 232 (423)
..|++|+|++.+++.++..+.....++ ..++.+.++++||+||||+|||++|+++|+.+.+.-
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 358999999999999999997655432 223334567899999999999999999999874431
Q ss_pred ---------EEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 233 ---------LKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 233 ---------i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
..+.... . ......++.+++.+.. ..+.|+||||+|.+. ...++.|+..++
T Consensus 79 ~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhh
Confidence 1111110 0 0122345667666654 335699999999983 344566666665
Q ss_pred hhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHH
Q 014525 300 QLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQ 379 (423)
Q Consensus 300 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~d 379 (423)
+ +..++++|.+|+.++.+.|++++ |+ ..+.|++|+.++..+++.... ++. ......++..+.|..+..
T Consensus 143 e-----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 143 E-----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRA 210 (394)
T ss_pred c-----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHH
Confidence 3 22344555555558999999998 87 699999999999887776322 333 223556788888866644
Q ss_pred HH
Q 014525 380 LK 381 (423)
Q Consensus 380 l~ 381 (423)
+.
T Consensus 211 ~~ 212 (394)
T PRK07940 211 RR 212 (394)
T ss_pred HH
Confidence 43
No 113
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.67 E-value=2.7e-15 Score=158.84 Aligned_cols=206 Identities=23% Similarity=0.258 Sum_probs=138.6
Q ss_pred CCCCCcccccCchHHHH---HHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 164 KPTEDYNDIGGLEKQIQ---ELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~---~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
..+.+|++++|++..+. .+...+.. ....+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 34578999999999885 44444421 123479999999999999999999999999998887531
Q ss_pred hhhhhhchHHHHHHHHHHH-----HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 014525 241 VQMFIGDGAKLVRDAFQLA-----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 315 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~t 315 (423)
. ...++..+..+ ....+.+|||||+|.+. ...+..|+..++. +.+++|++
T Consensus 89 ~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE~-------g~IiLI~a 143 (725)
T PRK13341 89 G-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVEN-------GTITLIGA 143 (725)
T ss_pred h-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhcC-------ceEEEEEe
Confidence 1 11122222222 11345799999999983 3445555554432 45667765
Q ss_pred cC--CCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc-------CCCC-CCCCHHHHHHhCCCCcHHHHHHHHH
Q 014525 316 TN--RADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK-------MNVH-PDVNFEELARSTDDFNGAQLKAVCV 385 (423)
Q Consensus 316 tn--~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~-~~~~l~~la~~~~g~s~~dl~~l~~ 385 (423)
|+ ....+++++++ |+ .++.|++++.+++..+++..+.. ..+. ++..+..|+.... .+.+.+.+++.
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le 219 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALE 219 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 53 33458899998 65 57899999999999999988762 1121 1223677888775 47888888888
Q ss_pred HHHHHHHHhC--CCCcCHHHHHHHHHHH
Q 014525 386 EAGMLALRRD--ATEVNHEDFNEGIIQV 411 (423)
Q Consensus 386 ~A~~~A~~~~--~~~It~~d~~~al~~~ 411 (423)
.|...+.... ...||.+++.+++...
T Consensus 220 ~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 220 LAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 8774432222 2237888888877663
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=3.4e-15 Score=159.88 Aligned_cols=203 Identities=20% Similarity=0.177 Sum_probs=139.4
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.||+.+.+.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 345679999999999999999887531 234468999999999999999999998642
Q ss_pred ---------------EEEEccchhhhhhhhchHHHHHHHHHHH----HhCCCeEEEECCchhhhccCCCCCCCCcHHHHH
Q 014525 232 ---------------FLKLAGPQLVQMFIGDGAKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQR 292 (423)
Q Consensus 232 ---------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 292 (423)
|+.++.... .....++.+.+.+ ....+.|+||||+|.|. ...++
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHH
Confidence 111221110 0122333333322 23456899999999983 45666
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCHHHHHHh
Q 014525 293 TMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD-VNFEELARS 371 (423)
Q Consensus 293 ~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~ 371 (423)
.|+.+|++ ...++++|++|+.++.|.+.+++ |+ .++.|..++.++...+++..+...++.-+ ..+..|+..
T Consensus 139 aLLK~LEE-----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 139 ALLKIVEE-----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777765 23466777777878888899988 76 78899999999999999888876665422 235566666
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 406 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 406 (423)
..| +.+++.+++...+..+ ....||.+++..
T Consensus 211 sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred cCC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 654 7788888887766332 234566665443
No 115
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=3.7e-15 Score=152.95 Aligned_cols=203 Identities=19% Similarity=0.286 Sum_probs=140.5
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
...+.+|++++|++..++.+...+... ..++++||+||+|||||++|+++|+.+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345689999999999999998877421 235679999999999999999999987431
Q ss_pred -------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 232 -------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 232 -------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
++.++++. ..+-..++.+...+.. ..+.|++|||+|.+. ...++.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHH
Confidence 12222111 0122334555554443 235799999999983 3445666
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~ 373 (423)
+..++. +...+++|++|+.+..+.+++++ |+ ..+.|++|+.++....++..+...+.. .+..+..++..+.
T Consensus 140 LKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 140 LKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 666654 33467778888888999999998 77 588999999999999988877665533 2233667777776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 407 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~a 407 (423)
| +++++.+++..+...+ + ..|+.+++.+.
T Consensus 212 G-dlR~AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 212 G-SLRDGLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred C-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 5 6777878777755332 2 23777766653
No 116
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.66 E-value=8.6e-15 Score=159.47 Aligned_cols=201 Identities=21% Similarity=0.296 Sum_probs=146.9
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEE
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 234 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~ 234 (423)
.+-.++.++|++..+..+.+.+.. +..++++|+||||||||++|+++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 345788999999998888886532 234578999999999999999999986 567888
Q ss_pred Eccchhh--hhhhhchHHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 235 LAGPQLV--QMFIGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 235 v~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
++++.++ ..|.|+.+..++.++..+.. ..+.||||||+|.+.+.+... +..+..+.|..++ ..+.+.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~~Lk~~l-------~~g~i~ 304 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGNMLKPAL-------ARGELH 304 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHHHhchhh-------hcCceE
Confidence 8888775 45788888889999988865 358999999999998643221 1223334433332 346788
Q ss_pred EEEEcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCC-----CHHHHHHhCCCCc-----
Q 014525 312 VIAATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDV-----NFEELARSTDDFN----- 376 (423)
Q Consensus 312 vI~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-----~l~~la~~~~g~s----- 376 (423)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+.....+ .+...+..+.+|.
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 999998763 47999999 995 57899999999999999887765544332 2445555555443
Q ss_pred HHHHHHHHHHHHHHH
Q 014525 377 GAQLKAVCVEAGMLA 391 (423)
Q Consensus 377 ~~dl~~l~~~A~~~A 391 (423)
|.-.-.++.+|+...
T Consensus 382 PdkAidlld~a~a~~ 396 (852)
T TIGR03346 382 PDKAIDLIDEAAARI 396 (852)
T ss_pred chHHHHHHHHHHHHH
Confidence 445556777777654
No 117
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.66 E-value=2e-15 Score=142.37 Aligned_cols=209 Identities=27% Similarity=0.368 Sum_probs=132.0
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc---EEEEccchhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAGPQLV 241 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~---~i~v~~~~l~ 241 (423)
.+.+++|.+|++..+.. ...+...+.. ..-.+++||||||||||+||+.|+.....+ |+.++...
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-- 200 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-- 200 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--
Confidence 44577777777766544 1111111111 123479999999999999999999988654 66655432
Q ss_pred hhhhhchHHHHHHHHHHHHh-----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 242 QMFIGDGAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
.....++.+|+.+++ ....||||||||++.. .-|.+++-.++ .+.+.+|++|
T Consensus 201 -----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk-----------sQQD~fLP~VE-------~G~I~lIGAT 257 (554)
T KOG2028|consen 201 -----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK-----------SQQDTFLPHVE-------NGDITLIGAT 257 (554)
T ss_pred -----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-----------hhhhcccceec-------cCceEEEecc
Confidence 233556777777754 4458999999999842 23345444333 3567788766
Q ss_pred --CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCC--------CCC------CCCHHHHHHhCCCCcHHHH
Q 014525 317 --NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMN--------VHP------DVNFEELARSTDDFNGAQL 380 (423)
Q Consensus 317 --n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~--------~~~------~~~l~~la~~~~g~s~~dl 380 (423)
|+.-.++.+|++ |+ .++.+..++.+....|+.+-...++ +.. +.-++.++..+.|-..+.+
T Consensus 258 TENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 258 TENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 444568999999 77 6778888899999999887443211 111 1126778888887655544
Q ss_pred HHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHH
Q 014525 381 KAVCVEAGMLALRRD---ATEVNHEDFNEGIIQV 411 (423)
Q Consensus 381 ~~l~~~A~~~A~~~~---~~~It~~d~~~al~~~ 411 (423)
..+--.+.+.+.+.+ +..++.+|+.+++..-
T Consensus 335 N~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 335 NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 433222222233332 3578899999888653
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.5e-15 Score=153.06 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=138.0
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+.+|++|+|++..++.+...+... +-+..+||+||+|||||++|+.+|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 35678999999999999998877531 123579999999999999999999998642
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++...- ..-..++.+.+.+. ...+.||||||+|.+. ...++.|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLL 140 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALL 140 (624)
T ss_pred HHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHH
Confidence 233332110 01122233322222 3446799999999983 34455665
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 374 (423)
..+++ ...++++|++|+.+..+.+.+++ |+ .++.|++++.++...+++..+...++. .+..+..|+..+.|
T Consensus 141 k~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 141 KTLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55543 22467788888888888888888 77 578999999999999998877665543 22336677777764
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
+.+++.+++..+. ..+...||.+++.+++
T Consensus 213 -dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 -SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred -CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 5667777766543 2244478888766554
No 119
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=1.1e-14 Score=147.12 Aligned_cols=193 Identities=17% Similarity=0.271 Sum_probs=130.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 281 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~ 281 (423)
++++||||+|+|||+|++++++++ +..++++++..+...+...........|.... ..+.+|+|||++.+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k--- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK--- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---
Confidence 569999999999999999999976 67888999887766544322111112333332 34579999999998532
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHhhc
Q 014525 282 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD---ILDPALMRSGRLD--RKIEFPHPTEEARARILQIHSRK 356 (423)
Q Consensus 282 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~ 356 (423)
...+..++.+++.+.. .+..+|++++..|. .+++.+.+ ||. ..+.+++|+.+++..|++..+..
T Consensus 218 ------~~~qeelf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 218 ------GATQEEFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ------hhhHHHHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 2445666677665432 12344444444443 46788988 884 79999999999999999998877
Q ss_pred CCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHH-HHHHh-CCCCcCHHHHHHHHHHHHH
Q 014525 357 MNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGM-LALRR-DATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 357 ~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~-~A~~~-~~~~It~~d~~~al~~~~~ 413 (423)
.++.- +..+..|+....+ +.+++...+...+. .|... ....||.+++.++++.+..
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 65442 2235667777664 66777776666642 23322 2356899999999987643
No 120
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.66 E-value=6.5e-15 Score=145.74 Aligned_cols=204 Identities=22% Similarity=0.299 Sum_probs=140.4
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
.++.+|++++|++..++.+...+... ..++.+||+||||+|||++|+++++.+.+.
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35678999999999999999877431 234579999999999999999999987432
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHHhC----CCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++... ......++.+++.+... .+.||+|||+|.+. ...++.++
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHH
Confidence 22222211 11223345566655432 34699999999873 23334444
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g 374 (423)
..++ . ...++++|++|+.++.+.+++.+ |+ ..+.|++|+.++...+++..+...+..- +..+..++..+.|
T Consensus 139 ~~le---~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 139 KTLE---E--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHh---C--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4443 2 23466777778888888889988 77 5789999999999999998887665442 2335667777654
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+++.+.+.+..+...+ ...||.+++.+++.
T Consensus 211 -~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred -ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 6777777777766543 23488887776553
No 121
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.66 E-value=1e-14 Score=141.60 Aligned_cols=227 Identities=20% Similarity=0.264 Sum_probs=151.8
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-------CcEEEEc
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-------ATFLKLA 236 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-------~~~i~v~ 236 (423)
.+...|.+|+|+++.+..+.-.+..| ..+++||.||+|||||++|+++++.+. .||....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 34568999999999999998876543 235899999999999999999988762 2332000
Q ss_pred ------cchhhhhh-------------------hhchHHHH------HHHHHHH---------HhCCCeEEEECCchhhh
Q 014525 237 ------GPQLVQMF-------------------IGDGAKLV------RDAFQLA---------KEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 237 ------~~~l~~~~-------------------~g~~~~~~------~~~~~~a---------~~~~~~vl~iDEid~l~ 276 (423)
++++.... .|.++..+ ...+... .....++||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 00111100 01111110 1111111 1223479999999997
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEcCCCC-CCChhhhcCCCcceEEEcCCCC-HHHH
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIEFPHPT-EEAR 346 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~v~vI~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p~-~~~r 346 (423)
++..|..|++.++... + .....++++|+|.|..+ .+.++++. ||...+.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 5678888888886521 1 11234788899888765 59999999 999999999887 5899
Q ss_pred HHHHHHHhhcC--CC---------C--------------CCCC--------HHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014525 347 ARILQIHSRKM--NV---------H--------------PDVN--------FEELARSTDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 347 ~~Il~~~~~~~--~~---------~--------------~~~~--------l~~la~~~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
.+|++...... .. . ..+. +..++..+.--+++.-..+++.|...|..
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 89988753210 00 0 0010 12233333334567777888999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHHhhh
Q 014525 394 RDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 394 ~~~~~It~~d~~~al~~~~~~~~ 416 (423)
+++..|+.+|+..+..-+..+..
T Consensus 305 ~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999988665
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.65 E-value=5e-15 Score=160.86 Aligned_cols=199 Identities=23% Similarity=0.329 Sum_probs=146.9
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEEc
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLA 236 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v~ 236 (423)
-.++.++|.++.+..+.+.+.. +.+++++|+||||||||++|+.+|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4688999999999999997642 245689999999999999999999986 36899999
Q ss_pred cchhh--hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 014525 237 GPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 314 (423)
Q Consensus 237 ~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ 314 (423)
++.++ .+|.|+.+..++.+++.+....+.||||||||.+.+..... ++.+..+.|...+. .+.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l~-------rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPALA-------RGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHHh-------CCCcEEEE
Confidence 98887 46788889999999999988888999999999998654321 22234445444443 35788999
Q ss_pred EcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc----CCCC-CCCCHHHHHHhCCCCc-----HHH
Q 014525 315 ATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK----MNVH-PDVNFEELARSTDDFN-----GAQ 379 (423)
Q Consensus 315 ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~-~~~~l~~la~~~~g~s-----~~d 379 (423)
+|+..+ ..++++.+ ||. .|.++.|+.++...|++..... ..+. ++..+..++..+.+|. |.-
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdk 389 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDK 389 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchH
Confidence 998654 47899998 995 5789999999998888754432 2222 2223556666665544 444
Q ss_pred HHHHHHHHHHHH
Q 014525 380 LKAVCVEAGMLA 391 (423)
Q Consensus 380 l~~l~~~A~~~A 391 (423)
.-.++.+|+...
T Consensus 390 aidlld~a~a~~ 401 (821)
T CHL00095 390 AIDLLDEAGSRV 401 (821)
T ss_pred HHHHHHHHHHHH
Confidence 556777777554
No 123
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=7.1e-15 Score=153.71 Aligned_cols=210 Identities=18% Similarity=0.289 Sum_probs=144.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEE---Eccch
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK---LAGPQ 239 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~---v~~~~ 239 (423)
+.++.+|++|+|++.+++.+...+... +.++.+||+||+|+|||++|+++|+.+.+.-.. -.|..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 345689999999999999999988532 234568999999999999999999988653110 01111
Q ss_pred hhh---h----h--hh---chHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC
Q 014525 240 LVQ---M----F--IG---DGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 303 (423)
Q Consensus 240 l~~---~----~--~g---~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~ 303 (423)
... . + -+ .+...++.+.+.+.. ..+.|++|||+|.+. ...++.|+..|++
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLEE--- 144 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLEE--- 144 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhhc---
Confidence 100 0 0 00 123345666666654 345799999999983 3345555555553
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCHHHHHHhCCCCcHHHHHH
Q 014525 304 FSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD-VNFEELARSTDDFNGAQLKA 382 (423)
Q Consensus 304 ~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~s~~dl~~ 382 (423)
+...+++|++|+.++.+.+.+++ |+ .++.|.+|+.++....++..+...++.-+ ..+..++..+.| +.+++..
T Consensus 145 --PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 145 --PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred --CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 33567777788888999999998 87 58999999999999999887776555422 235667777764 6788888
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 383 VCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 383 l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
++..+...+ ...||.+++.+.+
T Consensus 219 lLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 219 IAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHhc----cCCCCHHHHHHHH
Confidence 877765432 2347777776643
No 124
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.65 E-value=1.2e-14 Score=152.64 Aligned_cols=217 Identities=28% Similarity=0.399 Sum_probs=143.1
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 235 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v 235 (423)
+.+|++++|++..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46899999999999988776532 134579999999999999999998765 3578999
Q ss_pred ccchhhh-------hhhhchHHH----HHHHHH----------HHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 236 AGPQLVQ-------MFIGDGAKL----VRDAFQ----------LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 236 ~~~~l~~-------~~~g~~~~~----~~~~~~----------~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
+|..+.. .++|..... .+..+. .......++|||||++.| +...|..+
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHHH
Confidence 9876421 112211000 000000 111223579999999987 56778888
Q ss_pred HHHHHhhcC-----------------------CCCCCCeEEEE-EcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHH
Q 014525 295 LELLNQLDG-----------------------FSSDDRIKVIA-ATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 350 (423)
Q Consensus 295 ~~ll~~~~~-----------------------~~~~~~v~vI~-ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il 350 (423)
..+++.... .....++++|+ |++.+..+++++++ ||. .+.|++++.+++..|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 888865320 00122455555 45667889999988 885 6789999999999999
Q ss_pred HHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHHH
Q 014525 351 QIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--------DATEVNHEDFNEGIIQV 411 (423)
Q Consensus 351 ~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~--------~~~~It~~d~~~al~~~ 411 (423)
+..+...++. .+..+..|+.+++ .++...+++..+...+..+ ....|+.+|+.+++..-
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9988865533 2223556666655 4555555555554443222 22379999999998753
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.5e-15 Score=154.07 Aligned_cols=203 Identities=20% Similarity=0.273 Sum_probs=143.7
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------- 231 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------- 231 (423)
+..+.+|++|+|++.+++.+...+... +.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 345689999999999999999987531 235568999999999999999999998542
Q ss_pred -------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 232 -------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 232 -------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
++.+++.. ..+...++.+.+.+.. ..+.|++|||+|.|. ...++.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHH
Confidence 22222211 1122345555555543 335799999999983 3445666
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~ 373 (423)
+..|++ ...++++|++|+.++.+.+.+++ |+ ..+.|.+++.++....+...+...++. .+..+..|+..+.
T Consensus 140 Lk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~ 211 (576)
T PRK14965 140 LKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGD 211 (576)
T ss_pred HHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 666664 33567788888888999999998 77 588999999999998888877766554 2234677777776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 407 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~a 407 (423)
| +.+++.+++..+..++ ...||.+|+...
T Consensus 212 G-~lr~al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 5 6788888887766443 235777776654
No 126
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.1e-14 Score=148.49 Aligned_cols=210 Identities=20% Similarity=0.253 Sum_probs=140.8
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-------cEEE-E
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-------TFLK-L 235 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-------~~i~-v 235 (423)
.++.+|++++|++..++.+...+... ..++.+|||||+|+|||++|+.+|..+++ |+-. .
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 35678999999999999999988431 23456899999999999999999998863 1111 1
Q ss_pred ccchhhh-----hh-----hhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhh
Q 014525 236 AGPQLVQ-----MF-----IGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 301 (423)
Q Consensus 236 ~~~~l~~-----~~-----~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~ 301 (423)
+|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+. ...++.|+..+..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~LEe- 145 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLKTLEE- 145 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHHHHhc-
Confidence 1111110 00 00112234455444443 345799999999873 2334555555543
Q ss_pred cCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHH
Q 014525 302 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQL 380 (423)
Q Consensus 302 ~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl 380 (423)
....+++|++|+.++.+.+++.+ |+ ..+.|++|+.++...++...+...++.- +..+..|+..+.| +.+++
T Consensus 146 ----pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~a 217 (486)
T PRK14953 146 ----PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDA 217 (486)
T ss_pred ----CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 23455666666777788888888 77 4799999999999999999888766542 2336677777664 67888
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 381 KAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 381 ~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
.+++..+...+ ...||.+++.+++.
T Consensus 218 l~~Ldkl~~~~----~~~It~~~V~~~lg 242 (486)
T PRK14953 218 ASLLDQASTYG----EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHhc----CCCcCHHHHHHHhC
Confidence 88888776442 34688888777543
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.64 E-value=4.6e-15 Score=143.77 Aligned_cols=224 Identities=20% Similarity=0.311 Sum_probs=142.9
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-------Cc--EEEEc
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-------AT--FLKLA 236 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-------~~--~i~v~ 236 (423)
+..|.+|+|++.+++.+.-.+..+ ..+++||+||||||||++|++++.-+. .+ +..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 467999999999999887644211 125799999999999999999999883 21 11111
Q ss_pred c-c--------hhhh---------------hhhhch--HHHH---HHHHH--HHHhCCCeEEEECCchhhhccCCCCCCC
Q 014525 237 G-P--------QLVQ---------------MFIGDG--AKLV---RDAFQ--LAKEKSPCIIFIDEIDAIGTKRFDSEVS 285 (423)
Q Consensus 237 ~-~--------~l~~---------------~~~g~~--~~~~---~~~~~--~a~~~~~~vl~iDEid~l~~~r~~~~~~ 285 (423)
+ . ++.. ..+|.. ...+ ...|. .......++||+||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------
Confidence 0 0 0000 011110 0000 00010 001122379999999997
Q ss_pred CcHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEcCCCC-CCChhhhcCCCcceEEEcCCCCH-HHHHHHHHHHhh
Q 014525 286 GDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIEFPHPTE-EARARILQIHSR 355 (423)
Q Consensus 286 ~~~~~~~~l~~ll~~~~------~--~~~~~~v~vI~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~~ 355 (423)
++..+..|.+.++... + .....++++|+|+|+.+ .++++++. ||...+.+++|.. +++.+|+.....
T Consensus 141 -~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 141 -EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred -CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 5678888888887542 1 11234788999999755 58999998 9999999998877 888999886432
Q ss_pred cCC----C------CCC---------------CC--------HHHHHHhCCCCcH-HHHHHHHHHHHHHHHHhCCCCcCH
Q 014525 356 KMN----V------HPD---------------VN--------FEELARSTDDFNG-AQLKAVCVEAGMLALRRDATEVNH 401 (423)
Q Consensus 356 ~~~----~------~~~---------------~~--------l~~la~~~~g~s~-~dl~~l~~~A~~~A~~~~~~~It~ 401 (423)
.-. + ... +. +..++..+.--++ +++. +++.|...|..+++..|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~ 296 (334)
T PRK13407 218 YDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGR 296 (334)
T ss_pred ccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCH
Confidence 100 0 000 00 1222222221133 4454 8999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 014525 402 EDFNEGIIQVQAKKK 416 (423)
Q Consensus 402 ~d~~~al~~~~~~~~ 416 (423)
+|+..+..-+.....
T Consensus 297 ~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 297 SHLRSVATMALSHRL 311 (334)
T ss_pred HHHHHHHHHhhhhhc
Confidence 999998877776543
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.3e-14 Score=147.94 Aligned_cols=202 Identities=20% Similarity=0.235 Sum_probs=141.4
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA------------- 230 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~------------- 230 (423)
..+.+|++++|++..++.+...+... ..++.+|||||+|+|||++|+++|+.+.+
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45689999999999999999887431 23456899999999999999999998732
Q ss_pred -----------cEEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 231 -----------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 231 -----------~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
.++.++.+.- .+-..++.+...... ..+.|++|||+|.+ +.+.++.|+
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHH
Confidence 1222221110 012344444444322 23469999999998 345566666
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 374 (423)
..+.. ....+.+|++|+.+..+.+++++ |. ..+.|.+++.++....++..+...++. .+..+..|+..+.|
T Consensus 139 K~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 139 KTLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred HHHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66654 23456677777778899999998 85 689999999999999888877765554 23346777777665
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 407 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~a 407 (423)
+.+++.+++..|...+ ...||.+++.+.
T Consensus 211 -dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 211 -SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred -cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 8899999998877654 335676666544
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.64 E-value=1e-14 Score=132.99 Aligned_cols=193 Identities=19% Similarity=0.298 Sum_probs=135.2
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 240 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l 240 (423)
...+.+++++|.+.+++.+.+....++.. .|.+++||+|++|||||++++++.++. +..++.+...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 44578999999999999999998776664 477899999999999999999999977 678888887765
Q ss_pred hhhhhhchHHHHHHHHHHHHhC-CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 241 VQMFIGDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.. +..+++.++.. .+-|||+|++.- . .+......|..+|+..- ...+.|++|.+|||+-
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLsF-e---------~~d~~yk~LKs~LeGgl-e~~P~NvliyATSNRR 151 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLSF-E---------EGDTEYKALKSVLEGGL-EARPDNVLIYATSNRR 151 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCCC-C---------CCcHHHHHHHHHhcCcc-ccCCCcEEEEEecchh
Confidence 32 33455555533 357999998742 1 12233456666665422 2445799999999973
Q ss_pred CCC---------------------ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCC-CHH----HHHHhCC
Q 014525 320 DIL---------------------DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDV-NFE----ELARSTD 373 (423)
Q Consensus 320 ~~l---------------------~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~l~----~la~~~~ 373 (423)
.-+ +..+--..||...+.|.+|+.++-.+|++.++...++.-+. .+. ..+....
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 221 11111124999999999999999999999999877766331 121 1223344
Q ss_pred CCcHHHHHHHHH
Q 014525 374 DFNGAQLKAVCV 385 (423)
Q Consensus 374 g~s~~dl~~l~~ 385 (423)
|.||+-..+.+.
T Consensus 232 ~RSGRtA~QF~~ 243 (249)
T PF05673_consen 232 GRSGRTARQFID 243 (249)
T ss_pred CCCHHHHHHHHH
Confidence 567766555544
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.1e-14 Score=142.81 Aligned_cols=211 Identities=17% Similarity=0.217 Sum_probs=138.8
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh--
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL-- 240 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l-- 240 (423)
+..+.+|++++|++..++.+...+... ..++++|||||||+|||++|+++++.+.++.....+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345679999999999999999887531 235689999999999999999999987542111100000
Q ss_pred ----hhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 241 ----VQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 241 ----~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
...........++.++..+.. ..+.||+|||+|.+. ...++.+...++ . ....+++
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le---~--~~~~~~~ 141 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLE---E--PPAHAIF 141 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHh---C--CCCceEE
Confidence 000001112345555555433 335799999999873 222334444443 2 2334566
Q ss_pred EEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 313 IAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 313 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
|++++.+..+.+++.+ |+ ..+.|++|+.++...++...+...++. ++..+..|+..+.| +.+.+.+.+.....++
T Consensus 142 Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~ 217 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC 217 (367)
T ss_pred EEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 6677777888899988 76 478999999999999998877766653 23346777777654 6777777777666443
Q ss_pred HHhCCCCcCHHHHHHHHH
Q 014525 392 LRRDATEVNHEDFNEGII 409 (423)
Q Consensus 392 ~~~~~~~It~~d~~~al~ 409 (423)
+.. ||.+++...+.
T Consensus 218 ---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 ---GKN-ITRQAVTENLN 231 (367)
T ss_pred ---CCC-CCHHHHHHHhC
Confidence 222 77777776654
No 131
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.63 E-value=2e-14 Score=140.02 Aligned_cols=205 Identities=20% Similarity=0.262 Sum_probs=137.9
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-----CcEEEEc
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLA 236 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-----~~~i~v~ 236 (423)
++..+.+|++++|++.++..+...+... ...+++|+||||||||++++++++++. ..++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3345578999999999999999877421 123589999999999999999999873 3455555
Q ss_pred cchhhhhhhhchHHHHH-HHHHHHHh-----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCe
Q 014525 237 GPQLVQMFIGDGAKLVR-DAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI 310 (423)
Q Consensus 237 ~~~l~~~~~g~~~~~~~-~~~~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v 310 (423)
+++.... ..+. .+...+.. ..+.+|+|||+|.+. ...+..+..+++.. ..++
T Consensus 76 ~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~~~L~~~le~~-----~~~~ 133 (319)
T PRK00440 76 ASDERGI------DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQQALRRTMEMY-----SQNT 133 (319)
T ss_pred cccccch------HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHHHHHHHHHhcC-----CCCC
Confidence 4432110 1111 11122221 235699999999883 23445565555432 2235
Q ss_pred EEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014525 311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 311 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~ 389 (423)
.+|+++|.+..+.+++.+ |+. ++.|++|+.++...+++.++...++. .+..+..++..+.| +.+.+.+.++.+..
T Consensus 134 ~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~ 209 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA 209 (319)
T ss_pred eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 567777777778788887 774 68999999999999999888766553 23347778887665 56666666665443
Q ss_pred HHHHhCCCCcCHHHHHHHHHH
Q 014525 390 LALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 390 ~A~~~~~~~It~~d~~~al~~ 410 (423)
. ...||.+++..++..
T Consensus 210 ~-----~~~it~~~v~~~~~~ 225 (319)
T PRK00440 210 T-----GKEVTEEAVYKITGT 225 (319)
T ss_pred c-----CCCCCHHHHHHHhCC
Confidence 2 356888888777643
No 132
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1e-14 Score=147.69 Aligned_cols=191 Identities=12% Similarity=0.226 Sum_probs=137.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchHH---HHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAK---LVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~~---~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
++++||||+|+|||+|++++++++ +..++++++.++...+...... .+....... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 569999999999999999999965 4678899998888776543222 121111112 345799999999885
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC-CC---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHH
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR-AD---ILDPALMRSGRLD--RKIEFPHPTEEARARIL 350 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~-~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il 350 (423)
. ....+..++.+++.+... +. .+|.|++. |. .+++.+.+ ||. .++.+.+|+.+++.+|+
T Consensus 220 ~---------k~~~~e~lf~l~N~~~~~---~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 220 Y---------KEKTNEIFFTIFNNFIEN---DK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred C---------CHHHHHHHHHHHHHHHHc---CC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 3 345667788888765432 22 35555554 43 35788888 774 58899999999999999
Q ss_pred HHHhhcCCCC---CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHH
Q 014525 351 QIHSRKMNVH---PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-ATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 351 ~~~~~~~~~~---~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~-~~~It~~d~~~al~~~~~ 413 (423)
+..+...++. ++..+..|+..+.| +++.+..+|..+...+.... ...||.+.+.++++.+..
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~ 350 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPT 350 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccc
Confidence 9988765431 22336778887775 78999999999987776653 367999999999987643
No 133
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.6e-14 Score=149.58 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=140.5
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-------EEEE-
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT-------FLKL- 235 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~-------~i~v- 235 (423)
..+.+|++|+|++.+++.+...+... ..++.+|||||+|+|||++|+++|+.+.+. +-.+
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 45679999999999999999988531 234579999999999999999999998542 1111
Q ss_pred ccchhhhh-------hhh---chHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhh
Q 014525 236 AGPQLVQM-------FIG---DGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 301 (423)
Q Consensus 236 ~~~~l~~~-------~~g---~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~ 301 (423)
+|..+... +-| ..-..++.+.+.+. ...+.|++|||+|.+. ...++.|+..++
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK~LE-- 144 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLKTIE-- 144 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHHhhc--
Confidence 01110000 011 11233444443333 2456799999999983 233444444443
Q ss_pred cCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHH
Q 014525 302 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQL 380 (423)
Q Consensus 302 ~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl 380 (423)
. +...+++|++|+.+..+.+++++ |+ ..+.|.+++.++...+++..+...++. .+..+..|+....| +.+++
T Consensus 145 -e--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~a 217 (563)
T PRK06647 145 -E--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDA 217 (563)
T ss_pred -c--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 2 34567777777778889999998 87 478999999999999998877655544 22346667777665 78888
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 381 KAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 381 ~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
.+++..+...+ ...||.+++.+++
T Consensus 218 lslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 218 YTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 88888766442 2457877776654
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.63 E-value=1.8e-14 Score=132.54 Aligned_cols=170 Identities=23% Similarity=0.348 Sum_probs=115.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchHH-HHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAK-LVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
..++||||+|+|||+|+++++++. +..++++++.+|...+...... .+..+.... ....+|+||++|.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~- 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG- 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC-
Confidence 359999999999999999999875 5678999999887776443222 122222222 2457999999999863
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCcce--EEEcCCCCHHHHHHHHHHH
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLDR--KIEFPHPTEEARARILQIH 353 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf~~--~i~~~~p~~~~r~~Il~~~ 353 (423)
....+..+..+++.+.. .++.+|+++...|.. +++.+.+ ||.. .+.+.+|+.+.|..|++.+
T Consensus 112 --------~~~~q~~lf~l~n~~~~---~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 112 --------KQRTQEELFHLFNRLIE---SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHH---TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred --------chHHHHHHHHHHHHHHh---hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 34577888888887643 244555555556654 5688888 7654 8999999999999999998
Q ss_pred hhcCCCCCCC-CHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 354 SRKMNVHPDV-NFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 354 ~~~~~~~~~~-~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
+...++.-+. ....|+.... .+.++|..++......+
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 8877666322 2566777765 47889999888877654
No 135
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-15 Score=151.94 Aligned_cols=211 Identities=23% Similarity=0.302 Sum_probs=141.8
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 241 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~ 241 (423)
...+|++|+|.+.++..+.+.+.... ..+.+|||.|++||||..+|++|++.. +.||+.+||..+-
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 34689999999999999999876533 245689999999999999999999977 6799999997654
Q ss_pred hh-----hhhchHHH--------HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc--CCCC
Q 014525 242 QM-----FIGDGAKL--------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSS 306 (423)
Q Consensus 242 ~~-----~~g~~~~~--------~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~--~~~~ 306 (423)
.. .+|+..+. -..+|+.|. .+.||||||..+ +...|..|+++|++-. .+.+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 43 23332221 123344332 378999999987 4578999999997632 2222
Q ss_pred ----CCCeEEEEEcCCC-------CCCChhhhcCCCcceEEEcCCCCHHHH----HHHHHHHhhc----CCCC----CCC
Q 014525 307 ----DDRIKVIAATNRA-------DILDPALMRSGRLDRKIEFPHPTEEAR----ARILQIHSRK----MNVH----PDV 363 (423)
Q Consensus 307 ----~~~v~vI~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r----~~Il~~~~~~----~~~~----~~~ 363 (423)
+.+|.||+|||+. ..+...|.= |+. ++.+..|...+| ..+...++.+ ++-. .+.
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 2379999999953 223333332 442 455555554444 4455555543 2222 222
Q ss_pred CHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 364 NFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 364 ~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
.+..|.++.|..+.++|++++.++...+ .....|+.+|+.
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 3677888999999999999999998633 333346665555
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.62 E-value=1.3e-14 Score=134.44 Aligned_cols=190 Identities=22% Similarity=0.266 Sum_probs=132.2
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC------cEEEEcc
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA------TFLKLAG 237 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~------~~i~v~~ 237 (423)
..+.+|+++.|++.+++.+...+.. . ...++|||||||||||+.|+++|+++.. .+...+.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~-~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR-R------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh-c------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 3457899999999999999998854 1 1237999999999999999999999865 2233344
Q ss_pred chhhhhhhhchHHHHHHHHHHHHh---------CC-CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLAKE---------KS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD 307 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a~~---------~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 307 (423)
+...+.-++- ..+ .-|+.... ++ +.|++|||.|.+. .+.|..|...++. ..
T Consensus 97 SderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~-----~s 157 (346)
T KOG0989|consen 97 SDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMED-----FS 157 (346)
T ss_pred cccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhc-----cc
Confidence 4332222111 111 12222221 22 3799999999984 4567777777664 23
Q ss_pred CCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCHHHHHHhCCCCcHHHHHHHHHH
Q 014525 308 DRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD-VNFEELARSTDDFNGAQLKAVCVE 386 (423)
Q Consensus 308 ~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~s~~dl~~l~~~ 386 (423)
..+.+|..+|..+.+.+.+.+ |. ..+.|+++..+.....++....+-+++-+ ..+..|+..+.| +-++...+++.
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqs 233 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQS 233 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 467789999999999999998 87 57889999888888888887776666532 236777777765 55666666665
Q ss_pred HHH
Q 014525 387 AGM 389 (423)
Q Consensus 387 A~~ 389 (423)
+..
T Consensus 234 ls~ 236 (346)
T KOG0989|consen 234 LSL 236 (346)
T ss_pred hhc
Confidence 554
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=3.4e-14 Score=143.94 Aligned_cols=202 Identities=19% Similarity=0.281 Sum_probs=136.5
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-------------
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------- 231 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------- 231 (423)
.+.+|++|+|++..+..+...+... ..+..+|||||||+|||++|+++|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 4579999999999999998887531 235679999999999999999999987432
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.+++... . +-..++.+.+.+. ...+.|++|||+|.+. .+.++.|+
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LL 142 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLL 142 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHH
Confidence 222222110 0 1122333332222 2456899999999983 33455555
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 374 (423)
..++. ..+.+++|++|+.+..+.+++.+ |+ ..+.|++++.++....+...+...+.. .+..+..|+..+.|
T Consensus 143 k~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 143 KTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55543 23466777777888889999998 77 578999999999999888877765543 22346777777764
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
+.+.+.+.+..+... .+ ..||.+++.+++
T Consensus 215 -dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 215 -SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred -CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 667777776665433 12 347777665544
No 138
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=3.1e-14 Score=147.97 Aligned_cols=210 Identities=19% Similarity=0.204 Sum_probs=145.2
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc-------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA------- 236 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~------- 236 (423)
..+.+|++|+|++..++.+...+... +.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 35579999999999999999987531 34568999999999999999999999865321111
Q ss_pred ------cchhhhhh------h----hchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHH
Q 014525 237 ------GPQLVQMF------I----GDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 296 (423)
Q Consensus 237 ------~~~l~~~~------~----g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 296 (423)
|..+.... + ..+-..++.+.+.+.. ..+.|++|||+|.+. ...++.|+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~naLLK 154 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAFNALLK 154 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHHHHHHH
Confidence 11111100 0 0123345666665543 336799999999983 334555555
Q ss_pred HHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCHHHHHHhCCCC
Q 014525 297 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD-VNFEELARSTDDF 375 (423)
Q Consensus 297 ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~ 375 (423)
.|++ ....+++|++|+.++.+.+.+++ |+ ..+.|+.|+.++....++..+...+..-+ ..+..|+..+.|
T Consensus 155 tLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 155 TLEE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5554 23456677777777788888888 77 68999999999999999888876655422 335667777765
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 014525 376 NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 376 s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~ 409 (423)
+.+++.+.+..+.... ...||.+++.+.+.
T Consensus 226 dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 226 SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 7888888887765442 34688888887664
No 139
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.62 E-value=3.6e-14 Score=133.76 Aligned_cols=132 Identities=23% Similarity=0.274 Sum_probs=104.7
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC------------CCCCChhhhcCCC
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------ADILDPALMRSGR 331 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~~~~R 331 (423)
|+||||||+|.| +-++...|...+.. .-..+||++||+ |.-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 899999999997 55655555555542 123468888886 5668889988 7
Q ss_pred cceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 332 LDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 332 f~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
+ .+|...|++.++.++|+++....-.+. ++..++.|+.....-|-+--.+++.-|...|.++++..|..+|++.|..-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 7 688888999999999999998776665 33457888888777777888889999999999999999999999999887
Q ss_pred HHHhh
Q 014525 411 VQAKK 415 (423)
Q Consensus 411 ~~~~~ 415 (423)
+...+
T Consensus 432 F~D~k 436 (450)
T COG1224 432 FLDVK 436 (450)
T ss_pred HhhHH
Confidence 76643
No 140
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.6e-14 Score=144.69 Aligned_cols=213 Identities=15% Similarity=0.173 Sum_probs=139.3
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE-E---------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-L--------- 233 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~-i--------- 233 (423)
..+.+|++|+|++.+++.+...+... +.+..+||+||||+|||++|+++|+.+.+.- .
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 45678999999999999988877421 2355799999999999999999999986521 0
Q ss_pred EEccch------hhh-------hhhh---chHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHH
Q 014525 234 KLAGPQ------LVQ-------MFIG---DGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 293 (423)
Q Consensus 234 ~v~~~~------l~~-------~~~g---~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 293 (423)
.-.|.. +.. .+-| .....++.+.+.+.. ....|++|||+|.+. ...++.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~~~~~~ 146 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------IAAFNA 146 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------HHHHHH
Confidence 001110 000 0011 112344455444432 235799999999983 233445
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhC
Q 014525 294 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARST 372 (423)
Q Consensus 294 l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~ 372 (423)
++..++. ....+++|++++.+..+.+++.+ |+ .++.|++++.++....++..+...+.. .+..+..|+..+
T Consensus 147 LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 147 FLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5444442 22355566666667788888887 66 478999999999998888877655433 223367777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-hCCCCcCHHHHHHHH
Q 014525 373 DDFNGAQLKAVCVEAGMLALR-RDATEVNHEDFNEGI 408 (423)
Q Consensus 373 ~g~s~~dl~~l~~~A~~~A~~-~~~~~It~~d~~~al 408 (423)
.| +.+.+.+.+..+..++.. .....||.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 65 778888888877655422 234578888776654
No 141
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.61 E-value=2.5e-14 Score=139.00 Aligned_cols=221 Identities=22% Similarity=0.268 Sum_probs=147.0
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-------CCcEE-------
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-------NATFL------- 233 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-------~~~~i------- 233 (423)
.|..|+|++..+..+.-.+..| ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4888999999999987765432 23579999999999999999999876 22221
Q ss_pred --EEccchh----------------hh--------hhhhchHHHHHHH-------HH--HHHhCCCeEEEECCchhhhcc
Q 014525 234 --KLAGPQL----------------VQ--------MFIGDGAKLVRDA-------FQ--LAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 234 --~v~~~~l----------------~~--------~~~g~~~~~~~~~-------~~--~a~~~~~~vl~iDEid~l~~~ 278 (423)
..+|... .. .+.|.. .+... |. .......++|||||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL--- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC---
Confidence 0011100 00 111111 00000 00 111233479999999997
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEcCCCC-CCChhhhcCCCcceEEEcCCCCH-HHHHH
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-ILDPALMRSGRLDRKIEFPHPTE-EARAR 348 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~v~vI~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~ 348 (423)
++..|..|+++++... + .....++++|+|+|..+ .++++++. ||...+.++.|.. +++.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 4678888888886532 1 11234688899988655 69999999 9999999998876 88888
Q ss_pred HHHHHhhcC----C----CC-----------------CCCC--------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 014525 349 ILQIHSRKM----N----VH-----------------PDVN--------FEELARSTDDFNGAQLKAVCVEAGMLALRRD 395 (423)
Q Consensus 349 Il~~~~~~~----~----~~-----------------~~~~--------l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~ 395 (423)
|++...... . +. ..+. +..++..+..-+++.-..+++.|...|..++
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 887643210 0 00 1111 2233334443356777788999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 ~~~It~~d~~~al~~~~~~~~ 416 (423)
+..|+.+|+..+..-+.....
T Consensus 294 R~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999988664
No 142
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.60 E-value=2.5e-14 Score=139.52 Aligned_cols=200 Identities=20% Similarity=0.198 Sum_probs=136.6
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM- 243 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~- 243 (423)
-|++++|.+..++.+.+.+..... .+.+|||+|++||||+++|++++... +.||+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 467899999999999998865433 34579999999999999999999876 469999999876322
Q ss_pred ----hhhchHHHH----HHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC------CCCC
Q 014525 244 ----FIGDGAKLV----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS------SDDR 309 (423)
Q Consensus 244 ----~~g~~~~~~----~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~ 309 (423)
++|...+.. ............++||||||+.| +...|..|..+++...... ...+
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 222211000 00001112334589999999998 4678888988887532111 1236
Q ss_pred eEEEEEcCCC-------CCCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHhhcC----CCC-----CCCCHHHHHH
Q 014525 310 IKVIAATNRA-------DILDPALMRSGRL-DRKIEFPHPTE--EARARILQIHSRKM----NVH-----PDVNFEELAR 370 (423)
Q Consensus 310 v~vI~ttn~~-------~~l~~~l~~~~Rf-~~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-----~~~~l~~la~ 370 (423)
+.||+||+.. ..+.+.|.. || ...|.+|++.. +++..++.+++..+ +.. ++..+..|..
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~ 219 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN 219 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 8889988753 356677776 77 44778877755 45566666665332 211 1223677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 014525 371 STDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 371 ~~~g~s~~dl~~l~~~A~~~A 391 (423)
+.+..|.++|++++..|+..+
T Consensus 220 y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 220 YRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCCcHHHHHHHHHHHHHHhc
Confidence 889999999999999988653
No 143
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.4e-13 Score=135.27 Aligned_cols=193 Identities=21% Similarity=0.269 Sum_probs=141.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
-+.++||||+|.|||+|++|++++. +..+++++...++..++......-..-|..-. .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3569999999999999999999987 34688888888877766543332223444444 3479999999999743
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCcce--EEEcCCCCHHHHHHHHHHH
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLDR--KIEFPHPTEEARARILQIH 353 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf~~--~i~~~~p~~~~r~~Il~~~ 353 (423)
...+..++.+++.+... ++-+|+.+...|.. +.|.|.+ ||.. ++.+.+|+.+.|..|++..
T Consensus 191 ---------~~~qeefFh~FN~l~~~---~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 ---------ERTQEEFFHTFNALLEN---GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred ---------hhHHHHHHHHHHHHHhc---CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 34566777777765432 33445555555655 4589988 7755 7889999999999999997
Q ss_pred hhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 354 SRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 354 ~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
....++.- +.-...++.... -+.+++..++......|...++ .||.+.+.++++.+...
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 76665552 223667777765 4789999999998888877665 88999999888887764
No 144
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.60 E-value=2.3e-14 Score=139.74 Aligned_cols=193 Identities=21% Similarity=0.241 Sum_probs=131.8
Q ss_pred ccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh----
Q 014525 172 IGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF---- 244 (423)
Q Consensus 172 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~---- 244 (423)
++|.+.+++.+.+.+..... ...+|||+|++||||+++|++|+... +.||+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 57889999999988865432 34579999999999999999999876 4799999998654322
Q ss_pred -hhchHHH-------HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC------CCCCCe
Q 014525 245 -IGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF------SSDDRI 310 (423)
Q Consensus 245 -~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~------~~~~~v 310 (423)
+|...+. ....++ ....++||||||+.| +...|..|+.+++..... ....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchh---hCCCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 2221110 001122 234589999999998 567888999988753211 112468
Q ss_pred EEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhcC----CCC-----CCCCHHHHHHh
Q 014525 311 KVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRKM----NVH-----PDVNFEELARS 371 (423)
Q Consensus 311 ~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-----~~~~l~~la~~ 371 (423)
.+|++|+.. ..+.+.|.. |+. ..|.+|++.. +++..++++++..+ +.. .+..+..|..+
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 899998853 346677776 773 3667776653 55666666665432 211 12236778888
Q ss_pred CCCCcHHHHHHHHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A 391 (423)
.+..|.++|++++..|+..+
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchHHHHHHHHHHHHHhC
Confidence 88889999999999988655
No 145
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.59 E-value=5.4e-15 Score=147.07 Aligned_cols=211 Identities=21% Similarity=0.294 Sum_probs=141.6
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM 243 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~ 243 (423)
..+..++|...+++.+.+.+..... ...+|||+|++||||..+|++|++.. +.||+.+||..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4688999999999999998864322 34579999999999999999999987 469999999865443
Q ss_pred -----hhhchHH----HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc--CCCC----CC
Q 014525 244 -----FIGDGAK----LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSS----DD 308 (423)
Q Consensus 244 -----~~g~~~~----~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~--~~~~----~~ 308 (423)
.+|+..+ ....-.........++||||||..+ ..++|..|+.+|.+.. ...+ .-
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~v 275 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPIKV 275 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcccce
Confidence 3333221 1111111122234589999999987 5688999999997633 2222 23
Q ss_pred CeEEEEEcCCC-------CCCChhhhcCCCcceEEEcCCCCHHHHH----HHHHHHhhc----CCCC-CCC---CHHHHH
Q 014525 309 RIKVIAATNRA-------DILDPALMRSGRLDRKIEFPHPTEEARA----RILQIHSRK----MNVH-PDV---NFEELA 369 (423)
Q Consensus 309 ~v~vI~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~----~Il~~~~~~----~~~~-~~~---~l~~la 369 (423)
++.||++||.. ..+...|.- |+ .++.+..|...+|. -++++++.+ .+.. ..+ .+..|.
T Consensus 276 dvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 276 DVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred eeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 79999999953 234445544 55 25555555554444 466666644 2222 122 356777
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 370 RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 370 ~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
.+.|..|.++|++++..++..+ ....|+.+|+.
T Consensus 353 ~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 353 AYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred hCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 7888888999999999998666 44556655544
No 146
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.59 E-value=1.4e-14 Score=150.86 Aligned_cols=213 Identities=21% Similarity=0.248 Sum_probs=145.9
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 242 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~ 242 (423)
...|++++|.+..++.+.+.+..... ...+|||+|++|||||++|++|+... +.||+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 35799999999999999998865432 34579999999999999999999986 57999999987643
Q ss_pred hh-----hhchHHHH----HHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC--C----CC
Q 014525 243 MF-----IGDGAKLV----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--S----SD 307 (423)
Q Consensus 243 ~~-----~g~~~~~~----~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~--~----~~ 307 (423)
.. +|...+.. ............++||||||+.| +...|..|+++++..... . ..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCCceEe
Confidence 22 12111000 00000011234589999999998 567888999988753211 1 11
Q ss_pred CCeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCC--HHHHHHHHHHHhhcCC----CC---CCCCHHHHHH
Q 014525 308 DRIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPT--EEARARILQIHSRKMN----VH---PDVNFEELAR 370 (423)
Q Consensus 308 ~~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~~~----~~---~~~~l~~la~ 370 (423)
.++.+|+||+.. ..+.+.|.. |+. ..|.+|++. .++...++.+++..+. .. .+..+..|..
T Consensus 330 ~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 407 (534)
T TIGR01817 330 VDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMS 407 (534)
T ss_pred ecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Confidence 257889988753 235556655 553 367888776 3566677777765432 11 1223677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 371 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 371 ~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
+.|..|.++|++++..|+..+ ....|+.+|+.
T Consensus 408 ~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 408 CKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 888889999999999988654 55678888875
No 147
>PRK06620 hypothetical protein; Validated
Probab=99.59 E-value=8.7e-14 Score=127.42 Aligned_cols=164 Identities=16% Similarity=0.253 Sum_probs=112.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 284 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~ 284 (423)
++++||||||||||+|++++++..+..++. .... .. .. . ....+|+|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~~----~~----~-~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------NE----EI----L-EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------ch----hH----H-hcCCEEEEeccccch--------
Confidence 679999999999999999999987753322 1110 00 11 1 123689999999641
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC--CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHhhcCCCC
Q 014525 285 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI--LDPALMRSGRLD--RKIEFPHPTEEARARILQIHSRKMNVH 360 (423)
Q Consensus 285 ~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~--l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 360 (423)
. ..+..+++.+.. .+..++|+++..|.. + |++++ |+. .++.+.+|+.+.+..+++..+...++.
T Consensus 99 --~----~~lf~l~N~~~e---~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 --E----PALLHIFNIINE---KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred --H----HHHHHHHHHHHh---cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 245566655432 245667777666554 5 88888 764 479999999999999998877654443
Q ss_pred -CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 361 -PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 361 -~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
++..++.|+.+..+ +.+.+..++......+...+ ..||...+.+++
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 23337788888775 78889888888655554444 579998888775
No 148
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.5e-13 Score=143.09 Aligned_cols=213 Identities=15% Similarity=0.196 Sum_probs=139.1
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEE---------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK--------- 234 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~--------- 234 (423)
..+.+|++|+|++..++.+...+... +-+.++||+||+|||||++|+.+|+.+.+.-..
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 45679999999999999998876431 234579999999999999999999998662100
Q ss_pred -Eccc------hhhh-------hhhh---chHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHH
Q 014525 235 -LAGP------QLVQ-------MFIG---DGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT 293 (423)
Q Consensus 235 -v~~~------~l~~-------~~~g---~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 293 (423)
-.|. .+.. .+-| .+...++.+.+.+. ...+.|++|||+|.+. ...++.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a~na 146 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAAFNA 146 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHHHHH
Confidence 0111 0000 0011 11234445544442 2345799999999983 233455
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhC
Q 014525 294 MLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARST 372 (423)
Q Consensus 294 l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~ 372 (423)
|+..++. ....+++|++|+.+..+.+.+.+ |. ..+.|.+++.++....+...+...+.. .+..+..|+..+
T Consensus 147 LLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 147 FLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred HHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 5555543 22345566666667888889988 66 689999999999988888777655433 233467777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-hCCCCcCHHHHHHHH
Q 014525 373 DDFNGAQLKAVCVEAGMLALR-RDATEVNHEDFNEGI 408 (423)
Q Consensus 373 ~g~s~~dl~~l~~~A~~~A~~-~~~~~It~~d~~~al 408 (423)
.| +.+++.+.+.....++.. .....||.+++.+.+
T Consensus 219 ~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 219 QG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred CC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 65 677777777766544311 224568877776654
No 149
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.57 E-value=4.9e-14 Score=148.83 Aligned_cols=222 Identities=24% Similarity=0.287 Sum_probs=148.4
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-------------------
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT------------------- 228 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l------------------- 228 (423)
.|..|+|++..+..+.-....+ ...+|||.||+|||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999999998876655332 12479999999999999999999987
Q ss_pred ----------------CCcEEEEccchhhhhhhhch--HHHHH---HHH--HHHHhCCCeEEEECCchhhhccCCCCCCC
Q 014525 229 ----------------NATFLKLAGPQLVQMFIGDG--AKLVR---DAF--QLAKEKSPCIIFIDEIDAIGTKRFDSEVS 285 (423)
Q Consensus 229 ----------------~~~~i~v~~~~l~~~~~g~~--~~~~~---~~~--~~a~~~~~~vl~iDEid~l~~~r~~~~~~ 285 (423)
..+|+.++++......+|.. ...+. ..+ ..+.....+|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC----------
Confidence 24677766654433344431 11010 000 0011123479999999997
Q ss_pred CcHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEcCCC-CCCChhhhcCCCcceEEEcCCCC-HHHHHHHHHHHhh
Q 014525 286 GDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRA-DILDPALMRSGRLDRKIEFPHPT-EEARARILQIHSR 355 (423)
Q Consensus 286 ~~~~~~~~l~~ll~~~~------~--~~~~~~v~vI~ttn~~-~~l~~~l~~~~Rf~~~i~~~~p~-~~~r~~Il~~~~~ 355 (423)
++..+..|+++++... + .....++.+|+|+|+. ..+.++|+. ||+..+.++.+. .+++.++++....
T Consensus 139 -~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 139 -DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred -CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHh
Confidence 5678888888887532 1 1123478999999964 358899999 999999998765 4677777654321
Q ss_pred c-------------------------------CCCCCCCCHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHhCCCCcCH
Q 014525 356 K-------------------------------MNVHPDVNFEELARST--DDF-NGAQLKAVCVEAGMLALRRDATEVNH 401 (423)
Q Consensus 356 ~-------------------------------~~~~~~~~l~~la~~~--~g~-s~~dl~~l~~~A~~~A~~~~~~~It~ 401 (423)
. ..+. +..+..|+..+ .|. +.+....+++-|...|..+++..|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~ 294 (633)
T TIGR02442 216 FDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTA 294 (633)
T ss_pred hccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCH
Confidence 0 0000 00123333322 233 35666678888999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 014525 402 EDFNEGIIQVQAKKK 416 (423)
Q Consensus 402 ~d~~~al~~~~~~~~ 416 (423)
+|+..|+.-+.....
T Consensus 295 ~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 295 EDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999987554
No 150
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.57 E-value=3.5e-14 Score=150.95 Aligned_cols=213 Identities=18% Similarity=0.251 Sum_probs=142.7
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 242 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~ 242 (423)
...|++++|.+..++.+.+.+..... ...+|||+|++||||+++|++|++.. +.||+.+||..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 45799999999999999998865433 24569999999999999999999976 47999999987632
Q ss_pred -----hhhhchH----HHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC--CC----C
Q 014525 243 -----MFIGDGA----KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SS----D 307 (423)
Q Consensus 243 -----~~~g~~~----~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~--~~----~ 307 (423)
.++|... ......|+ ....++||||||+.| +...|..|+++++..... .+ .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~---~a~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFE---LAHGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCcee---ECCCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 2333210 00001122 234589999999998 567888999988753211 11 1
Q ss_pred CCeEEEEEcCCC-------CCCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHhhcC----CCC---CCCCHHHHHH
Q 014525 308 DRIKVIAATNRA-------DILDPALMRSGRL-DRKIEFPHPTE--EARARILQIHSRKM----NVH---PDVNFEELAR 370 (423)
Q Consensus 308 ~~v~vI~ttn~~-------~~l~~~l~~~~Rf-~~~i~~~~p~~--~~r~~Il~~~~~~~----~~~---~~~~l~~la~ 370 (423)
.++.||+||+.. ..+.+.|.. |+ ...|.+|++.. ++...+++.++..+ +.. .+..+..|..
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 267899998853 234444443 44 23566666544 34555666665433 111 2223677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 371 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 371 ~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
+.+..+.++|++++..|+..+ ....|+.+|+...+
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 888889999999999988653 44568888876555
No 151
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.56 E-value=5.9e-14 Score=144.07 Aligned_cols=211 Identities=18% Similarity=0.239 Sum_probs=138.6
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHH-----------hCCcEEEE
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ-----------TNATFLKL 235 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~-----------l~~~~i~v 235 (423)
..|++++|.+..++.+++.+..... .+.+|||+|++||||+++|++|++. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4689999999999999998864322 3457999999999999999999987 35799999
Q ss_pred ccchhhhh-----hhhchHHH--------HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc
Q 014525 236 AGPQLVQM-----FIGDGAKL--------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 302 (423)
Q Consensus 236 ~~~~l~~~-----~~g~~~~~--------~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~ 302 (423)
||+.+... .+|+..+. ...+|+.+ ..++||||||+.| +...|..|+.+++...
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 99876433 23322111 11233332 3479999999998 5678899999987633
Q ss_pred CC--C----CCCCeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhcC----CCC--
Q 014525 303 GF--S----SDDRIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRKM----NVH-- 360 (423)
Q Consensus 303 ~~--~----~~~~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-- 360 (423)
.. . ...++.+|++||.. ..+.+.|.. |+. ..|.+|++.. ++...++.+++.+. +..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 11 1 12367899998853 123444443 442 3566666644 45566777777542 222
Q ss_pred CCC------CHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 014525 361 PDV------NFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404 (423)
Q Consensus 361 ~~~------~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 404 (423)
.+. .+..|..+.|..|.++|++++.+++..+-......|+.+++
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 110 02566777888899999999999887542222234555544
No 152
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.56 E-value=7.4e-14 Score=143.47 Aligned_cols=213 Identities=18% Similarity=0.209 Sum_probs=143.6
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM 243 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~ 243 (423)
..|++++|.+..++.+.+.+..... ...+|||+|++||||+++|++|++.. +.||+.+||..+-+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 5789999999999999998864322 34579999999999999999999875 579999999866432
Q ss_pred -----hhhchHHH--------HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC--CC--
Q 014525 244 -----FIGDGAKL--------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SS-- 306 (423)
Q Consensus 244 -----~~g~~~~~--------~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~--~~-- 306 (423)
.+|+..+. ...+|+.+ ..++||||||+.| +...|..|+.+|...... .+
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 23322111 11233322 3479999999998 567889999998753311 11
Q ss_pred --CCCeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhcCCCC--CCCC---HHH--
Q 014525 307 --DDRIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRKMNVH--PDVN---FEE-- 367 (423)
Q Consensus 307 --~~~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~~~~--~~~~---l~~-- 367 (423)
..++.+|++|+.. ..+.+.|.. |+. ..|.+||+.. ++...++.+++..+... ..++ +..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 2256889988754 234445554 553 4677777755 45666777776543211 1122 333
Q ss_pred -----HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 014525 368 -----LARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 406 (423)
Q Consensus 368 -----la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 406 (423)
|..+.|..|.++|++++.+++..+.......|+.+++..
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 778888899999999999988764322345677777643
No 153
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.56 E-value=5.2e-14 Score=142.05 Aligned_cols=213 Identities=19% Similarity=0.258 Sum_probs=152.1
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-------EEEE
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT-------FLKL 235 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~-------~i~v 235 (423)
+..+..|++++|++...+.|...+... +-..+.||+||.|||||++||.+|+.+++. +..+
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 345678999999999999999988542 234579999999999999999999998653 1111
Q ss_pred c-cchhhhh----------hhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHh
Q 014525 236 A-GPQLVQM----------FIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 300 (423)
Q Consensus 236 ~-~~~l~~~----------~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ 300 (423)
. |.++... -...+-..++.+.+.+.- ..+.|.+|||+|.|.. . .+..+|..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~---afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------Q---AFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------H---HHHHHhcc
Confidence 1 1111110 011233445566665543 4468999999999842 2 44445554
Q ss_pred hcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCC-HHHHHHhCCCCcHHH
Q 014525 301 LDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVN-FEELARSTDDFNGAQ 379 (423)
Q Consensus 301 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~~g~s~~d 379 (423)
++ .+..+|++|++|..+..+++.+++ |+ ..+.|...+.++....+...+.+-++.-+.+ +..+++...| +.+|
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 44 355689999999999999999999 77 6788999999999999999998777764433 6667777765 8999
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 380 LKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 380 l~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
...++.+|...+ ...||.+.+...+..+
T Consensus 217 alslLDq~i~~~----~~~It~~~v~~~lG~~ 244 (515)
T COG2812 217 ALSLLDQAIAFG----EGEITLESVRDMLGLT 244 (515)
T ss_pred HHHHHHHHHHcc----CCcccHHHHHHHhCCC
Confidence 999999988654 2556666666554443
No 154
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.9e-13 Score=143.19 Aligned_cols=210 Identities=17% Similarity=0.205 Sum_probs=136.6
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEE---Ec---
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK---LA--- 236 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~---v~--- 236 (423)
+..+.+|++|+|++..++.+...+... ..+..+||+||+|+|||++|+++|+.+.+..-. ..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 446689999999999999998877431 234468999999999999999999988542110 00
Q ss_pred cc---hhhhh----h------hhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 237 GP---QLVQM----F------IGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 237 ~~---~l~~~----~------~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
|+ .+... + .......++.+.+.+.. ..+.||+|||+|.|. .+.++.|+..++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLLk~LE 145 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALLKTLE 145 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHHHHHh
Confidence 10 00000 0 00112234444443332 345799999999983 233445555544
Q ss_pred hhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHH
Q 014525 300 QLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGA 378 (423)
Q Consensus 300 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~ 378 (423)
. . ..++++|++++..+.+.+.+.+ |+ ..+.|+.++..+...++...+...++. .+..+..|+..+.| +.+
T Consensus 146 e---p--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr 216 (585)
T PRK14950 146 E---P--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMR 216 (585)
T ss_pred c---C--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 3 2 2456667677777778888887 76 578999999999999888877665543 22236677777765 788
Q ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 379 QLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 379 dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
++.+.+.....+ ....||.+++.+.+
T Consensus 217 ~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 217 DAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 888877765432 23468888876543
No 155
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.56 E-value=1.6e-14 Score=141.90 Aligned_cols=201 Identities=25% Similarity=0.297 Sum_probs=136.1
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 242 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~ 242 (423)
...+..|||.+.++..+.+.|..-.. ....|||.|++||||..+|++|++.. ..||+.+||+.+-+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 45778999999999999998875433 34679999999999999999999987 57999999986654
Q ss_pred hhhhc-hHHHHHHHHHHHHh--------CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc--CCCCC----
Q 014525 243 MFIGD-GAKLVRDAFQLAKE--------KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSSD---- 307 (423)
Q Consensus 243 ~~~g~-~~~~~~~~~~~a~~--------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~--~~~~~---- 307 (423)
..... --+..+..|.-|.. ...+.||+|||..| ...+|..|+..|++.+ ...+.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCceeE
Confidence 42111 01122233333322 23479999999887 4688999999998643 22222
Q ss_pred CCeEEEEEcCCCCCCChhhhcCCCcc-------eEEEcCCCCHHHHH----HHHHHHhhc----CCCC----CCCCHHHH
Q 014525 308 DRIKVIAATNRADILDPALMRSGRLD-------RKIEFPHPTEEARA----RILQIHSRK----MNVH----PDVNFEEL 368 (423)
Q Consensus 308 ~~v~vI~ttn~~~~l~~~l~~~~Rf~-------~~i~~~~p~~~~r~----~Il~~~~~~----~~~~----~~~~l~~l 368 (423)
.+|.||++||+ +|..++.. |+|- .++.+..|...+|. -+..+|+.+ .+.. +...++.|
T Consensus 357 VDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L 433 (550)
T COG3604 357 VDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELL 433 (550)
T ss_pred EEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHH
Confidence 27899999995 33333322 3331 24455555554443 244444433 3331 12237788
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 014525 369 ARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~~A~~~A 391 (423)
..+.+..|.+++++++..|+..|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 88999899999999999999877
No 156
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.5e-13 Score=142.20 Aligned_cols=206 Identities=18% Similarity=0.239 Sum_probs=135.1
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEE----Eccc-
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK----LAGP- 238 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~----v~~~- 238 (423)
..+..|++++|++..++.+...+... +-+.++||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 34578999999999999999887532 123479999999999999999999998652110 0111
Q ss_pred -----hh--------h--hhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 239 -----QL--------V--QMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 239 -----~l--------~--~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
.+ + ....+.....++.+.+.+.. ..+.|++|||+|.|. .+.++.|+..++
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK~LE 146 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNALLKTLE 146 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHHHHHHh
Confidence 00 0 00011233456666665543 345799999999983 344555555555
Q ss_pred hhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHH
Q 014525 300 QLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGA 378 (423)
Q Consensus 300 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~ 378 (423)
+ ....+++|++|+.+..+.+.+++ |+ ..+.|+.++.++....+...+.+.+.. ....+..++..+.| +.+
T Consensus 147 e-----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr 217 (620)
T PRK14948 147 E-----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLR 217 (620)
T ss_pred c-----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 3 33567777777778888899988 77 678999999988888777766654433 12236677777765 456
Q ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 014525 379 QLKAVCVEAGMLALRRDATEVNHEDFNE 406 (423)
Q Consensus 379 dl~~l~~~A~~~A~~~~~~~It~~d~~~ 406 (423)
++.+++.....+ ...||.+++.+
T Consensus 218 ~A~~lLeklsL~-----~~~It~e~V~~ 240 (620)
T PRK14948 218 DAESLLDQLSLL-----PGPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHHhc-----cCCCCHHHHHH
Confidence 666666654322 12466555443
No 157
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.55 E-value=2.3e-14 Score=140.19 Aligned_cols=202 Identities=24% Similarity=0.248 Sum_probs=137.9
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQL 240 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l 240 (423)
....+.+++|.+...+.+++.+.... +...+||++|++||||+++|+.|+... +.||+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34678999999999999999997621 123579999999999999999998643 579999999877
Q ss_pred hhhh-----hhchHHH-------HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC----
Q 014525 241 VQMF-----IGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF---- 304 (423)
Q Consensus 241 ~~~~-----~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~---- 304 (423)
.... +|...+. ...+|+.+ ..++||+|||+.+ .++.|..++.+++...-.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCC
Confidence 5442 2222111 11223322 3479999999998 568899999999874321
Q ss_pred --CCCCCeEEEEEcCC--CCCCCh--hhhcCCCcceEEEcCCCCH--HHHHHHHHHHhh----cCCCCCCC----CHHHH
Q 014525 305 --SSDDRIKVIAATNR--ADILDP--ALMRSGRLDRKIEFPHPTE--EARARILQIHSR----KMNVHPDV----NFEEL 368 (423)
Q Consensus 305 --~~~~~v~vI~ttn~--~~~l~~--~l~~~~Rf~~~i~~~~p~~--~~r~~Il~~~~~----~~~~~~~~----~l~~l 368 (423)
....+|.+|++|+. ++.+-. .+.++ |+...|.+|++.. +++..++++++. +++..... ....|
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 22347889999873 122223 44432 5667888877765 444455555553 34443222 24566
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHH
Q 014525 369 ARSTDDFNGAQLKAVCVEAGMLAL 392 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~~A~~~A~ 392 (423)
..+.+..|.+++++++..++..+.
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhc
Confidence 677777789999999999998774
No 158
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.55 E-value=2.5e-14 Score=136.83 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=104.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh--hhhchHHH----------HHHHHHHHHhCCCeEEEEC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM--FIGDGAKL----------VRDAFQLAKEKSPCIIFID 270 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~--~~g~~~~~----------~~~~~~~a~~~~~~vl~iD 270 (423)
..+++||.||||||||++++.+|..++.++++++++..+.. ++|...-. ....+..+.. .+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 45789999999999999999999999999999998765544 44432100 0112233333 34789999
Q ss_pred CchhhhccCCCCCCCCcHHHHHHHHHHHHhh---------cCCCCCCCeEEEEEcCCCC------------CCChhhhcC
Q 014525 271 EIDAIGTKRFDSEVSGDREVQRTMLELLNQL---------DGFSSDDRIKVIAATNRAD------------ILDPALMRS 329 (423)
Q Consensus 271 Eid~l~~~r~~~~~~~~~~~~~~l~~ll~~~---------~~~~~~~~v~vI~ttn~~~------------~l~~~l~~~ 329 (423)
|++.. .++++..|..+|+.- ..+..+.++.||+|+|+.+ .++.+++.
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99984 677888888888731 1122345799999999854 37899999
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHhhc
Q 014525 330 GRLDRKIEFPHPTEEARARILQIHSRK 356 (423)
Q Consensus 330 ~Rf~~~i~~~~p~~~~r~~Il~~~~~~ 356 (423)
||..++.+..|+.++-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999876543
No 159
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.55 E-value=1.2e-13 Score=142.88 Aligned_cols=210 Identities=20% Similarity=0.269 Sum_probs=140.3
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 241 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~ 241 (423)
....|++++|.+..++.+.+.+..... ....|||+|++||||+++|++++... ..||+.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 457899999999999999988754322 23569999999999999999998765 4699999998764
Q ss_pred hh-----hhhchHH-------HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc--CCC--
Q 014525 242 QM-----FIGDGAK-------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFS-- 305 (423)
Q Consensus 242 ~~-----~~g~~~~-------~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~--~~~-- 305 (423)
.. .+|...+ ....+|+. ...++||||||+.+ +...|..|+++++... ...
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCC
Confidence 32 1222110 00122332 33589999999998 5678889999987632 111
Q ss_pred --CCCCeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhc----CCCC----CCCCH
Q 014525 306 --SDDRIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRK----MNVH----PDVNF 365 (423)
Q Consensus 306 --~~~~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~----~~~~l 365 (423)
...++.||+||+.+ ..+.+.|.. |+. ..+.+|++.. +++..++.+++.. .+.. ++..+
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 12367889888753 236666766 654 4666666654 3455555555543 2221 12235
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 014525 366 EELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404 (423)
Q Consensus 366 ~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 404 (423)
..|..+.|..+.++|++++..|+..+ ....|+.+|+
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 67777888889999999999988654 3445666653
No 160
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.54 E-value=1.3e-13 Score=142.54 Aligned_cols=198 Identities=23% Similarity=0.272 Sum_probs=136.6
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM- 243 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~- 243 (423)
.+.+++|.+..++.+.+.+..... .+.+|||+|++||||+++|++|+... +.+|+.++|..+-..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 678899999999999998865322 34679999999999999999999976 579999999876432
Q ss_pred ----hhhchHHH----H---HHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--C----CC
Q 014525 244 ----FIGDGAKL----V---RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--F----SS 306 (423)
Q Consensus 244 ----~~g~~~~~----~---~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~----~~ 306 (423)
.+|...+. . ...|+ ....++||||||+.| +...|..|..+++.... . ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 22221110 0 01222 234589999999998 46788899988875321 1 11
Q ss_pred CCCeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhcC----CCC----CCCCHHHH
Q 014525 307 DDRIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRKM----NVH----PDVNFEEL 368 (423)
Q Consensus 307 ~~~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~----~~~~l~~l 368 (423)
..++.||++|+.. ..+.+.|.. |+. ..|.+|++.. ++...++++++..+ +.. .+..+..|
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2368899999853 235666665 553 3466666654 44555666665432 211 12236778
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHH
Q 014525 369 ARSTDDFNGAQLKAVCVEAGMLAL 392 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~~A~~~A~ 392 (423)
..+.+..|.++|++++..|+..+.
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcC
Confidence 888999999999999999997764
No 161
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=6e-13 Score=139.32 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=138.4
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+.+|++|+|++..++.+...+... ..+..+|||||+|+|||++|+.+|+.+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 34579999999999999999987531 234569999999999999999999987532
Q ss_pred -------------EEEEccchhhhhhhhchHHHHHHHHHHHHhC----CCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 232 -------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK----SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 232 -------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
++.+++.. ......++.+...+... .+.|++|||+|.+. ...++.|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naL 141 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAF 141 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHH
Confidence 22222211 01123455555554432 35699999999983 3445566
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC-CCHHHHHHhCC
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD-VNFEELARSTD 373 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~ 373 (423)
+.+|+. ....+++|++|+.+..+-+.+++ |+ .++.|++++.++....+...+...++.-+ ..+..|+..+.
T Consensus 142 LK~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~ 213 (614)
T PRK14971 142 LKTLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD 213 (614)
T ss_pred HHHHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 666654 22456677777777889999998 76 67999999999999999888777665532 23677777775
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 374 DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 374 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
| +.+++.+.+.....++ +.. ||.+++.+.+
T Consensus 214 g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 214 G-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred C-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 4 6777777776655443 212 6665554443
No 162
>PRK09087 hypothetical protein; Validated
Probab=99.52 E-value=5.4e-13 Score=123.25 Aligned_cols=172 Identities=19% Similarity=0.215 Sum_probs=118.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 284 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~ 284 (423)
+.++|+||+|+|||||++++++..+..++ +...+...+ +..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHH-----------HHhhhc---CeEEEECCCCCCC-------
Confidence 34999999999999999999988765543 333322211 111111 4899999998631
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHhhcCCC
Q 014525 285 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLD--RKIEFPHPTEEARARILQIHSRKMNV 359 (423)
Q Consensus 285 ~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~ 359 (423)
. +..++.+++.... .++.+||+++..|.. ..+.+++ |+. .++.+.+|+.+.+..+++.++...++
T Consensus 102 --~---~~~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 --D---ETGLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred --C---HHHHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 2346666665432 234556666555543 3678888 664 69999999999999999998876555
Q ss_pred C-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 360 H-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 360 ~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
. ++..+..|+.+..+ +.+.+..++......+...+ ..||...++++++.+
T Consensus 172 ~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 4 23347788888774 67777777777766665544 569999999999875
No 163
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.52 E-value=1.3e-12 Score=130.61 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=136.2
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccc-hhhhhhhh
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGP-QLVQMFIG 246 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~-~l~~~~~g 246 (423)
..|+|.++.++.+...+. ...++||+||||||||++|++++...+. +|..+.+. ......+|
T Consensus 20 ~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 457899999888877662 3568999999999999999999997743 44443332 11122333
Q ss_pred ch-HHHH--HHHHHHHHhC---CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-----CCeEEEEE
Q 014525 247 DG-AKLV--RDAFQLAKEK---SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-----DRIKVIAA 315 (423)
Q Consensus 247 ~~-~~~~--~~~~~~a~~~---~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~-----~~v~vI~t 315 (423)
.. -... ...|...... ...+||+|||..+ ++..|..|++++++..-.... ...++++|
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 21 0000 1112211111 1248999999874 678899999999764311111 12344555
Q ss_pred cCCCC---CCChhhhcCCCcceEEEcCCCC-HHHHHHHHHHHhhc----CCCCCCCC-----------------------
Q 014525 316 TNRAD---ILDPALMRSGRLDRKIEFPHPT-EEARARILQIHSRK----MNVHPDVN----------------------- 364 (423)
Q Consensus 316 tn~~~---~l~~~l~~~~Rf~~~i~~~~p~-~~~r~~Il~~~~~~----~~~~~~~~----------------------- 364 (423)
||... .+.+++.. ||-..+.+|+|+ .++..+++...... .....-+.
T Consensus 154 TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ey 231 (498)
T PRK13531 154 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFEL 231 (498)
T ss_pred CCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHH
Confidence 57322 23458888 998899999997 45557777653221 11111111
Q ss_pred HHHHHHh---C---CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q 014525 365 FEELARS---T---DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 365 l~~la~~---~---~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~ 416 (423)
+..|... + ...|++-...+++.|...|+..++..|+.+|+. .+..+.....
T Consensus 232 I~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl 288 (498)
T PRK13531 232 IFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDA 288 (498)
T ss_pred HHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCH
Confidence 1222221 1 226888888999999999999999999999999 7776665443
No 164
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.51 E-value=4.6e-13 Score=114.04 Aligned_cols=141 Identities=44% Similarity=0.670 Sum_probs=95.1
Q ss_pred CchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchHH
Q 014525 174 GLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAK 250 (423)
Q Consensus 174 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~~ 250 (423)
|.+..+..+...+.. ...++++++||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 566667777665532 235679999999999999999999998 8899999988765543322111
Q ss_pred H---HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC-CCCCCeEEEEEcCCCC--CCCh
Q 014525 251 L---VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-SSDDRIKVIAATNRAD--ILDP 324 (423)
Q Consensus 251 ~---~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~~v~vI~ttn~~~--~l~~ 324 (423)
. ............+.+|+|||++.+. ......+.+++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLS-----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhh-----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 1122333445567999999999862 23334555555543221 1135688889988776 6788
Q ss_pred hhhcCCCcceEEEcCC
Q 014525 325 ALMRSGRLDRKIEFPH 340 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~ 340 (423)
.+.+ ||+.++.+++
T Consensus 138 ~~~~--r~~~~i~~~~ 151 (151)
T cd00009 138 ALYD--RLDIRIVIPL 151 (151)
T ss_pred hHHh--hhccEeecCC
Confidence 8887 9988887763
No 165
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.51 E-value=5.1e-13 Score=136.32 Aligned_cols=212 Identities=22% Similarity=0.341 Sum_probs=136.2
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-----------------
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN----------------- 229 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~----------------- 229 (423)
.+|.++.|+..+++.+.-.+ ....+++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 48999999998877655443 2346799999999999999999987431
Q ss_pred -----------CcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHH
Q 014525 230 -----------ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 298 (423)
Q Consensus 230 -----------~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 298 (423)
.||...+++......+|.........+. ....+||||||++.+ ++.++..|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~---lA~~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEIS---LAHNGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhh---ccCCCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 2333333222222222211100011122 233489999999987 467888888888
Q ss_pred Hhhc--------CCCCCCCeEEEEEcCCC------C-----------------CCChhhhcCCCcceEEEcCCCCHHH--
Q 014525 299 NQLD--------GFSSDDRIKVIAATNRA------D-----------------ILDPALMRSGRLDRKIEFPHPTEEA-- 345 (423)
Q Consensus 299 ~~~~--------~~~~~~~v~vI~ttn~~------~-----------------~l~~~l~~~~Rf~~~i~~~~p~~~~-- 345 (423)
+... ......++.+|+++|+. . .+...|+. |||..+.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 6532 11123478999999962 1 47888888 999999999775432
Q ss_pred -----------HHHHHHHH------hhcC---CCCCCCCHHHH----------------HHhCCCCcHHHHHHHHHHHHH
Q 014525 346 -----------RARILQIH------SRKM---NVHPDVNFEEL----------------ARSTDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 346 -----------r~~Il~~~------~~~~---~~~~~~~l~~l----------------a~~~~g~s~~dl~~l~~~A~~ 389 (423)
+..+.+.+ +... .+.....-..+ +....++|.+....+++-|..
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 22232221 1111 11111111111 112345899999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHH
Q 014525 390 LALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 390 ~A~~~~~~~It~~d~~~al~ 409 (423)
.|-.++...|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999985
No 166
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.51 E-value=3.1e-14 Score=125.64 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=74.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCC----cEEEEccchhhhhhhhchHHHHHHHHH----HHHhCCCeEEEECCchh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNA----TFLKLAGPQLVQMFIGDGAKLVRDAFQ----LAKEKSPCIIFIDEIDA 274 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~----~~i~v~~~~l~~~~~g~~~~~~~~~~~----~a~~~~~~vl~iDEid~ 274 (423)
|-.++||+||+|||||.+|+++|+.+.. +++.++|+++.... +....+..+.. .......+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457999999999999999999999986 99999999987611 00011111111 11112225999999999
Q ss_pred hhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC------CCeEEEEEcCCC
Q 014525 275 IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD------DRIKVIAATNRA 319 (423)
Q Consensus 275 l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~------~~v~vI~ttn~~ 319 (423)
+.+............+++.|+++++...-.... .++++|+|+|-.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 744211111111227899999999865432222 389999999954
No 167
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.48 E-value=8e-13 Score=141.56 Aligned_cols=201 Identities=22% Similarity=0.313 Sum_probs=134.3
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM 243 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~ 243 (423)
..|.+++|.+..++.+.+.+..... ...+|||+|++|||||++|++|+... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 5788999999999999998865332 34579999999999999999999866 579999999865332
Q ss_pred -----hhhchHHH----HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--C----CCCC
Q 014525 244 -----FIGDGAKL----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--F----SSDD 308 (423)
Q Consensus 244 -----~~g~~~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~----~~~~ 308 (423)
.+|...+. .............++||||||+.+ +...|..|..+++...- . ....
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 510 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKIIQT 510 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCcccc
Confidence 22321100 000111122334589999999997 56788899998875321 1 1124
Q ss_pred CeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhcC----CCC----CCCCHHHHHH
Q 014525 309 RIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRKM----NVH----PDVNFEELAR 370 (423)
Q Consensus 309 ~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~----~~~~l~~la~ 370 (423)
++.+|++|+.. ..+...+.. |+. ..|.+|++.. +++..++++++.++ +.. +...+..|..
T Consensus 511 ~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~ 588 (686)
T PRK15429 511 DVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSN 588 (686)
T ss_pred eEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 68899999853 234455554 443 2456665544 34445666665432 211 1233677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 014525 371 STDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 371 ~~~g~s~~dl~~l~~~A~~~A 391 (423)
+.|..|.++|++++..|+..+
T Consensus 589 y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 589 MEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CCCCCcHHHHHHHHHHHHHhC
Confidence 899999999999999998654
No 168
>PHA02244 ATPase-like protein
Probab=99.48 E-value=1.4e-12 Score=126.26 Aligned_cols=144 Identities=22% Similarity=0.212 Sum_probs=94.3
Q ss_pred CchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhc--hHHH
Q 014525 174 GLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--GAKL 251 (423)
Q Consensus 174 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~--~~~~ 251 (423)
|...........+...+. .+.++||+||||||||++|+++|..++.+|+.++...-.....|. ..+.
T Consensus 100 g~sp~~~~~~~ri~r~l~-----------~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~ 168 (383)
T PHA02244 100 ASNPTFHYETADIAKIVN-----------ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGK 168 (383)
T ss_pred CCCHHHHHHHHHHHHHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccccc
Confidence 555555555554433222 245799999999999999999999999999999843111111111 0011
Q ss_pred HH-HHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc------CCCCCCCeEEEEEcCCC-----
Q 014525 252 VR-DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------GFSSDDRIKVIAATNRA----- 319 (423)
Q Consensus 252 ~~-~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~------~~~~~~~v~vI~ttn~~----- 319 (423)
.. .-+-.+. ..+++|+|||++.+ .++++..|..+++... ....+.++.+|+|+|.+
T Consensus 169 ~~dgpLl~A~-~~GgvLiLDEId~a-----------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~ 236 (383)
T PHA02244 169 FHETPFYEAF-KKGGLFFIDEIDAS-----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGAD 236 (383)
T ss_pred ccchHHHHHh-hcCCEEEEeCcCcC-----------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcc
Confidence 11 1122222 34579999999985 5677777777775311 11234688999999973
Q ss_pred ------CCCChhhhcCCCcceEEEcCCCCH
Q 014525 320 ------DILDPALMRSGRLDRKIEFPHPTE 343 (423)
Q Consensus 320 ------~~l~~~l~~~~Rf~~~i~~~~p~~ 343 (423)
..+++++++ || ..++|+.|+.
T Consensus 237 ~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 237 HIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred cccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 458999999 99 5799999884
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.47 E-value=2.4e-12 Score=126.10 Aligned_cols=216 Identities=26% Similarity=0.248 Sum_probs=135.5
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh--hhhch
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM--FIGDG 248 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~--~~g~~ 248 (423)
.++|.+..+..+...+. ..+++||.||||||||++|+++|..++.+|+++.|...+.. ..|..
T Consensus 25 ~~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 37787777777766552 34689999999999999999999999999999998754322 22221
Q ss_pred HHHHH----HHHHHHHh-CCC---eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc------C-CCCCCCeEEE
Q 014525 249 AKLVR----DAFQLAKE-KSP---CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------G-FSSDDRIKVI 313 (423)
Q Consensus 249 ~~~~~----~~~~~a~~-~~~---~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~------~-~~~~~~v~vI 313 (423)
.-... ..+..... -.. +|+++|||+. +++.+++.|++++++.. . ..-...++||
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr-----------a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~vi 158 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR-----------APPEVQNALLEALEERQVTVPGLTTIRLPPPFIVI 158 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEecccc-----------CCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEE
Confidence 11100 00000000 001 4999999998 47899999999998632 2 3344578899
Q ss_pred EEcCC-----CCCCChhhhcCCCcceEEEcCCCCH-HHHHHHHHHHhhcC------CCCCCCCH----------------
Q 014525 314 AATNR-----ADILDPALMRSGRLDRKIEFPHPTE-EARARILQIHSRKM------NVHPDVNF---------------- 365 (423)
Q Consensus 314 ~ttn~-----~~~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~~~~------~~~~~~~l---------------- 365 (423)
+|+|+ ...++.++++ ||...++++.|+. .+...+........ ....-+..
T Consensus 159 aT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVS 236 (329)
T ss_pred EccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCch
Confidence 99993 4558999999 9999999999944 44444443332211 11100110
Q ss_pred -------HHHHHhC-------CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 366 -------EELARST-------DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 366 -------~~la~~~-------~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
..+...+ .|.+++....++..+...|...++..+..+|+.........+
T Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 237 DEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred HHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 1111111 123455666666666666767777777777777666655543
No 170
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.47 E-value=4.1e-12 Score=120.75 Aligned_cols=192 Identities=16% Similarity=0.231 Sum_probs=122.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCC-cEEE---Ecc----chhhhh---hhhch------HHHHHHHH----HHHHhCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNA-TFLK---LAG----PQLVQM---FIGDG------AKLVRDAF----QLAKEKS 263 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~-~~i~---v~~----~~l~~~---~~g~~------~~~~~~~~----~~a~~~~ 263 (423)
+.++|+||+|+|||++++.+++.+.. .+.. +++ .++... ..|.. ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45889999999999999999998752 2221 111 111111 11111 11112222 2233456
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC--CCC----ChhhhcCCCcceEEE
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA--DIL----DPALMRSGRLDRKIE 337 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~--~~l----~~~l~~~~Rf~~~i~ 337 (423)
+.+|+|||+|.+. ......+..+.+. . ......+.|+++.... +.+ ...+.+ |+...+.
T Consensus 124 ~~vliiDe~~~l~-----------~~~~~~l~~l~~~-~-~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNLT-----------PELLEELRMLSNF-Q-TDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred CeEEEEECcccCC-----------HHHHHHHHHHhCc-c-cCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 7899999999873 2233333333222 1 1122334444444321 111 123444 7888999
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCC-----CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 014525 338 FPHPTEEARARILQIHSRKMNVH-----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 338 ~~~p~~~~r~~Il~~~~~~~~~~-----~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~ 412 (423)
+++++.++...++...+...+.. .+..+..|.+.+.|. ++.|..+|..|...|..++...|+.+++..++..++
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 99999999999999888755432 123467778888875 677999999999999999999999999999999875
No 171
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.46 E-value=3.8e-12 Score=133.34 Aligned_cols=136 Identities=23% Similarity=0.295 Sum_probs=91.2
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc----CC------------CCCCCeEEEEEcCCC--CCCChhh
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD----GF------------SSDDRIKVIAATNRA--DILDPAL 326 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~----~~------------~~~~~v~vI~ttn~~--~~l~~~l 326 (423)
++|||||++.| .+..|..|.++|.... +. ....++.+|+++|.. ..++|+|
T Consensus 219 GtL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CEEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 67888888887 3567888888886432 10 112368899999964 5799999
Q ss_pred hcCCCcc---eEEEcC---CCCHHHHHHHHHHHh---hcCCCCCCCC---HHHHHHh---C------CCCcHHHHHHHHH
Q 014525 327 MRSGRLD---RKIEFP---HPTEEARARILQIHS---RKMNVHPDVN---FEELARS---T------DDFNGAQLKAVCV 385 (423)
Q Consensus 327 ~~~~Rf~---~~i~~~---~p~~~~r~~Il~~~~---~~~~~~~~~~---l~~la~~---~------~g~s~~dl~~l~~ 385 (423)
++ ||+ ..+.|+ +.+.+.+.++++... +..+..+..+ +..|.+. . ...+.++|.++|+
T Consensus 288 ~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 288 RS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 98 998 666665 334566655554333 2222222333 3333321 1 1245799999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 386 EAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 386 ~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
.|...|..++...|+.+|+.+|++....
T Consensus 366 ~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 366 AAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 9988888888899999999999887654
No 172
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.44 E-value=1e-12 Score=115.60 Aligned_cols=122 Identities=25% Similarity=0.381 Sum_probs=84.1
Q ss_pred ccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-----
Q 014525 172 IGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----- 243 (423)
Q Consensus 172 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~----- 243 (423)
|+|.+..++.+++.+.....+ +.+|||+|++||||+++|++|++.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 579999999999988765443 4689999999999999999999976 479999999876433
Q ss_pred hhhchHH-------HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--CCC----CCCe
Q 014525 244 FIGDGAK-------LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS----DDRI 310 (423)
Q Consensus 244 ~~g~~~~-------~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~~~----~~~v 310 (423)
.+|...+ ....+++.+ ..++||||||+.| .+.+|..|+++++...- ... ..++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeec---cceEEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 2332111 011233333 4489999999998 56899999999986431 111 2379
Q ss_pred EEEEEcCC
Q 014525 311 KVIAATNR 318 (423)
Q Consensus 311 ~vI~ttn~ 318 (423)
.||+||+.
T Consensus 136 RiI~st~~ 143 (168)
T PF00158_consen 136 RIIASTSK 143 (168)
T ss_dssp EEEEEESS
T ss_pred eEEeecCc
Confidence 99999984
No 173
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.43 E-value=1.3e-13 Score=123.31 Aligned_cols=146 Identities=28% Similarity=0.391 Sum_probs=70.7
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC------------------
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN------------------ 229 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~------------------ 229 (423)
+|.+|+|++.++..+.-+.. .+.++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa---------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA---------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH---------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc---------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 48899999999999877653 236899999999999999999998651
Q ss_pred ----------CcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 230 ----------ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 230 ----------~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
.||....-+.-....+|......- ..+.....+|||+||+-.+ ++.+...|.+-++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~P---GeislAh~GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRP---GEISLAHRGVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE----CGGGGTTSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCc---CHHHHhcCCEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 122222211111111222100000 0111222389999999886 5677788888887
Q ss_pred hhcC--------CCCCCCeEEEEEcCCC-----------------------CCCChhhhcCCCcceEEEcCCCCHH
Q 014525 300 QLDG--------FSSDDRIKVIAATNRA-----------------------DILDPALMRSGRLDRKIEFPHPTEE 344 (423)
Q Consensus 300 ~~~~--------~~~~~~v~vI~ttn~~-----------------------~~l~~~l~~~~Rf~~~i~~~~p~~~ 344 (423)
.... +....++.+|+|+|+- ..+...++. |||..+.++..+.+
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 6432 1223478999999961 236677777 88888888876654
No 174
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.43 E-value=1.2e-11 Score=111.19 Aligned_cols=193 Identities=18% Similarity=0.247 Sum_probs=134.4
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 240 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l 240 (423)
.+.+...+|+|.+.+++.+.+....++.. .|.++|||+|..|||||+|+||+.++. +..++.|+..++
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 34477889999999999999988765554 467899999999999999999999987 567899988876
Q ss_pred hhhhhhchHHHHHHHHHHHHhCC-CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 241 VQMFIGDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.. +..+++..+..+ +-|||+|++--= .+......|..+|+.. --....||+|.+|+|+-
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd~~yK~LKs~LeG~-ve~rP~NVl~YATSNRR 184 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSFE----------EGDDAYKALKSALEGG-VEGRPANVLFYATSNRR 184 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCchHHHHHHHHhcCC-cccCCCeEEEEEecCCc
Confidence 43 224555555433 478999997431 1223345555566532 22345699999999975
Q ss_pred CCCC--------------------hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCC---CHHHHH--HhCCC
Q 014525 320 DILD--------------------PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDV---NFEELA--RSTDD 374 (423)
Q Consensus 320 ~~l~--------------------~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~---~l~~la--~~~~g 374 (423)
..++ ..+--+.||...+.|++++.++-..|+.+++..++++-.. +...+. ....|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 3332 1111235999999999999999999999999988887431 122222 23345
Q ss_pred CcHHHHHHHHH
Q 014525 375 FNGAQLKAVCV 385 (423)
Q Consensus 375 ~s~~dl~~l~~ 385 (423)
-||+-..+.++
T Consensus 265 RSGR~A~QF~~ 275 (287)
T COG2607 265 RSGRVAWQFIR 275 (287)
T ss_pred CccHhHHHHHH
Confidence 66765555443
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.43 E-value=3.7e-12 Score=131.50 Aligned_cols=196 Identities=19% Similarity=0.218 Sum_probs=126.2
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCc-EEEE---ccchhhhhhhhch-HHHHHHHHHHHHhCCCeEEEECCchhhhccCC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNAT-FLKL---AGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRF 280 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~-~i~v---~~~~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~ 280 (423)
++||+|+||||||++|+++++.+... |+.. ++..+........ .+...---........++++|||++.+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l----- 312 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKM----- 312 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhC-----
Confidence 69999999999999999999987543 3221 2222211110000 000000000011233579999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEcCCCC-------------CCChhhhcCCCcceEEEc-
Q 014525 281 DSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-------------ILDPALMRSGRLDRKIEF- 338 (423)
Q Consensus 281 ~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~v~vI~ttn~~~-------------~l~~~l~~~~Rf~~~i~~- 338 (423)
.+..+..|.+.+++-. + .....++.||+|+|+.. .|++++++ |||.++.+
T Consensus 313 ------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~ 384 (509)
T smart00350 313 ------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVL 384 (509)
T ss_pred ------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEec
Confidence 4567788888876422 1 11234788999999752 58999999 99886544
Q ss_pred CCCCHHHHHHHHHHHhhcCC-----------------------------CCCCCC---HHHHHH-----h----------
Q 014525 339 PHPTEEARARILQIHSRKMN-----------------------------VHPDVN---FEELAR-----S---------- 371 (423)
Q Consensus 339 ~~p~~~~r~~Il~~~~~~~~-----------------------------~~~~~~---l~~la~-----~---------- 371 (423)
..|+.+...+|+++.+.... +.+.+. ...|.. +
T Consensus 385 d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~ 464 (509)
T smart00350 385 DEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARS 464 (509)
T ss_pred CCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccccccc
Confidence 68899888888877542110 000111 111111 1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
..+.|++.+..+++.|...|..+.+..|+.+|+..|+.-+..+
T Consensus 465 ~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s 507 (509)
T smart00350 465 SIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRES 507 (509)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHh
Confidence 1245889999999999999999999999999999999887643
No 176
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=4.7e-12 Score=124.15 Aligned_cols=189 Identities=17% Similarity=0.187 Sum_probs=121.7
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-------cEEEE-
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-------TFLKL- 235 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-------~~i~v- 235 (423)
..+..|.+|+|++.++..+...+... +.+..+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 34578999999999999999987532 23457999999999999999999998854 11111
Q ss_pred c---cch---hhhh----h--hh----c---------hHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCC
Q 014525 236 A---GPQ---LVQM----F--IG----D---------GAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSG 286 (423)
Q Consensus 236 ~---~~~---l~~~----~--~g----~---------~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~ 286 (423)
. |.. +... + +. . +...++.+.+... ...+.|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 1 110 0000 0 00 0 1122333333322 345679999999998
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHH
Q 014525 287 DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFE 366 (423)
Q Consensus 287 ~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~ 366 (423)
+...++.|+..+++ ...++++|..|+.+..+.|.+++ |+ ..+.|++|+.++...++........++ +....
T Consensus 154 ~~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~ 224 (351)
T PRK09112 154 NRNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITE 224 (351)
T ss_pred CHHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHH
Confidence 34555666666654 23455666667778888899988 88 699999999999999998743222211 12245
Q ss_pred HHHHhCCCCcHHHHHHHHH
Q 014525 367 ELARSTDDFNGAQLKAVCV 385 (423)
Q Consensus 367 ~la~~~~g~s~~dl~~l~~ 385 (423)
.++..+.| +++...+++.
T Consensus 225 ~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 225 ALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHHcCC-CHHHHHHHHh
Confidence 66666665 5555555543
No 177
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.42 E-value=4.9e-12 Score=132.31 Aligned_cols=196 Identities=21% Similarity=0.269 Sum_probs=134.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccchhhhhhhhchHHHHHHHHH---------HHHhCCCeEEEECCch
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQMFIGDGAKLVRDAFQ---------LAKEKSPCIIFIDEID 273 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~l~~~~~g~~~~~~~~~~~---------~a~~~~~~vl~iDEid 273 (423)
++|||.|+||||||++|++++..++ .+|+.+..+......+|... +...+. .+.....++||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 5799999999999999999999875 36888886433333344321 000000 0111234799999999
Q ss_pred hhhccCCCCCCCCcHHHHHHHHHHHHhhc------CC--CCCCCeEEEEEcCCCC---CCChhhhcCCCcceEEEcC-CC
Q 014525 274 AIGTKRFDSEVSGDREVQRTMLELLNQLD------GF--SSDDRIKVIAATNRAD---ILDPALMRSGRLDRKIEFP-HP 341 (423)
Q Consensus 274 ~l~~~r~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~v~vI~ttn~~~---~l~~~l~~~~Rf~~~i~~~-~p 341 (423)
.+ ++..|..|+++++... +. ....++.||+|+|..+ .+.++++. ||..++.+. +|
T Consensus 95 rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 95 LL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred hC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 97 5678889999887543 11 1224788999999765 69999999 999988776 55
Q ss_pred CHHHHHHHHHHHhhcC-------------------------CCCCCCCHHHHHHhC--CCCc-HHHHHHHHHHHHHHHHH
Q 014525 342 TEEARARILQIHSRKM-------------------------NVHPDVNFEELARST--DDFN-GAQLKAVCVEAGMLALR 393 (423)
Q Consensus 342 ~~~~r~~Il~~~~~~~-------------------------~~~~~~~l~~la~~~--~g~s-~~dl~~l~~~A~~~A~~ 393 (423)
+.++|.+|++.++... .+.. ..+..|+..+ .|.+ .+.-..+++-|...|..
T Consensus 162 ~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~-~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 162 SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISA-EQVKELVLTAASLGISGHRADLFAVRAAKAHAAL 240 (589)
T ss_pred CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCH-HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 6778888887755221 1110 1122333221 2333 45566788889999999
Q ss_pred hCCCCcCHHHHHHHHHHHHHhhh
Q 014525 394 RDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 394 ~~~~~It~~d~~~al~~~~~~~~ 416 (423)
+++..|+.+|+..|+.-+..+..
T Consensus 241 ~gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 241 HGRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred hCCCCCCHHHHHHHHHHHhhhhc
Confidence 99999999999999999987654
No 178
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.40 E-value=3.4e-12 Score=131.10 Aligned_cols=214 Identities=23% Similarity=0.279 Sum_probs=143.8
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF 244 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~ 244 (423)
.+.+++|....++.+.+.+.... .....++|+|++|||||++|++++... +.+|+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 56789999999988888765322 234569999999999999999999986 4799999998764322
Q ss_pred -----hhchHHHHHH----HHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC------CCCC
Q 014525 245 -----IGDGAKLVRD----AFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS------SDDR 309 (423)
Q Consensus 245 -----~g~~~~~~~~----~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~ 309 (423)
+|...+.... ..........+.|||||++.+ +...|..|.++++...... ...+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 273 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVKVD 273 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEEee
Confidence 2211110000 000011233579999999998 4678888888887532111 1236
Q ss_pred eEEEEEcCCC-------CCCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHhhcC----CCC----CCCCHHHHHHh
Q 014525 310 IKVIAATNRA-------DILDPALMRSGRL-DRKIEFPHPTE--EARARILQIHSRKM----NVH----PDVNFEELARS 371 (423)
Q Consensus 310 v~vI~ttn~~-------~~l~~~l~~~~Rf-~~~i~~~~p~~--~~r~~Il~~~~~~~----~~~----~~~~l~~la~~ 371 (423)
+.+|+||+.. ..+.+.|.. |+ ...|.+|++.. ++...++.+++..+ +.. .+..+..|..+
T Consensus 274 ~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 351 (469)
T PRK10923 274 VRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 (469)
T ss_pred EEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 7889998753 346677776 66 45777777654 45666776666432 111 12237788889
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
.+..|.++|+++++.|...+ ....|+.+|+...+
T Consensus 352 ~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 352 AWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred CCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 99999999999999988655 56678888876444
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.40 E-value=7e-12 Score=127.90 Aligned_cols=214 Identities=21% Similarity=0.304 Sum_probs=137.6
Q ss_pred ccccCCCCCcccccCchHHHHHHHHHHHccccC--hhHHhhh-------------------CCCCCCCceEEcCCCCChh
Q 014525 160 EVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTH--KERFQKL-------------------GVRPPKGVLLYGPPGTGKT 218 (423)
Q Consensus 160 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~--~~~~~~~-------------------g~~~~~~vLl~Gp~GtGKT 218 (423)
.+++..+..|.++.|.+..-..+..+++.+=.. ...+.++ +-++.+-+||+||||-|||
T Consensus 261 WVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 261 WVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred eecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 345556678999999999999888887643110 0011111 1122345899999999999
Q ss_pred HHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHH--------hCCCeEEEECCchhhhccCCCCCCCCcHHH
Q 014525 219 LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAK--------EKSPCIIFIDEIDAIGTKRFDSEVSGDREV 290 (423)
Q Consensus 219 ~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~--------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~ 290 (423)
+||+.+|++.|..++.||.|+--.. ..++.....+- ...|..|++||||. +.+..
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG-----------a~~~~ 403 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG-----------APRAA 403 (877)
T ss_pred HHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccC-----------CcHHH
Confidence 9999999999999999999863221 11222222111 25688999999997 34555
Q ss_pred HHHHHHHHHh--hcCCCCCC--------------CeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh
Q 014525 291 QRTMLELLNQ--LDGFSSDD--------------RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHS 354 (423)
Q Consensus 291 ~~~l~~ll~~--~~~~~~~~--------------~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 354 (423)
.++++.++.. ......+. .-.||+.+| +..-|+|+.---|..++.|++|...-..+-|+..+
T Consensus 404 Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC 481 (877)
T KOG1969|consen 404 VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN--DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEIC 481 (877)
T ss_pred HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec--CccchhhhhcccceEEEEecCCChhHHHHHHHHHH
Confidence 6677776651 11111111 234788888 45567775322488899999999987777777666
Q ss_pred hcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 014525 355 RKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 395 (423)
Q Consensus 355 ~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~ 395 (423)
..-++. .+...|...++ ++..||+.+++.....|....
T Consensus 482 ~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 482 HRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred hhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 655554 33444444443 344589998888887775543
No 180
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.39 E-value=2.6e-11 Score=111.78 Aligned_cols=134 Identities=24% Similarity=0.251 Sum_probs=98.8
Q ss_pred CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC-------------CCCCChhhhcC
Q 014525 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR-------------ADILDPALMRS 329 (423)
Q Consensus 263 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~-------------~~~l~~~l~~~ 329 (423)
-|+||||||+|.| +-++..-|...|.. .-..+||++||+ |.-+++.++.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalES------~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALES------PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhcC------CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 3899999999997 45555555555432 223457777776 4557889988
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 330 GRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 330 ~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
|+ .+|..-+++.++.++|+++....-++.- +..+..|+.....-|-+-..+++.-|...|-..++..|..+|++++-
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 77 5666677888999999998887655552 33467777776666677777788888888888899999999999988
Q ss_pred HHHHHhhh
Q 014525 409 IQVQAKKK 416 (423)
Q Consensus 409 ~~~~~~~~ 416 (423)
.-+...+.
T Consensus 436 ~Lf~Dak~ 443 (456)
T KOG1942|consen 436 ELFLDAKR 443 (456)
T ss_pred HHHHhchh
Confidence 87776443
No 181
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.1e-12 Score=119.13 Aligned_cols=215 Identities=22% Similarity=0.333 Sum_probs=134.6
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCC--------CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVR--------PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~--------~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
=++|++.+++.+.=++.. .|.++... ...++||.||+|||||+||+.+|+.++.||...++..+.+
T Consensus 62 YVIGQe~AKKvLsVAVYN------HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTE 135 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYN------HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE 135 (408)
T ss_pred heecchhhhceeeeeehh------HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhh
Confidence 478999999877655432 33333211 1246999999999999999999999999999999988865
Q ss_pred -hhhhch-HHHHHHHHHHH----HhCCCeEEEECCchhhhccCCCC---CCCCcHHHHHHHHHHHHhh-cCCCCC-----
Q 014525 243 -MFIGDG-AKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDS---EVSGDREVQRTMLELLNQL-DGFSSD----- 307 (423)
Q Consensus 243 -~~~g~~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~l~~ll~~~-~~~~~~----- 307 (423)
.|+|+. +..+-.+...+ .+...+||||||||+++.+..+. ...+...+|+.|+.++..- .+..++
T Consensus 136 AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKH 215 (408)
T COG1219 136 AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 215 (408)
T ss_pred ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCC
Confidence 377764 34444444433 23345899999999998765321 1223456889988888631 111111
Q ss_pred ----------CCeEEEEEcCC---------------------------------------CC-----CCChhhhcCCCcc
Q 014525 308 ----------DRIKVIAATNR---------------------------------------AD-----ILDPALMRSGRLD 333 (423)
Q Consensus 308 ----------~~v~vI~ttn~---------------------------------------~~-----~l~~~l~~~~Rf~ 333 (423)
.|+++|+..-- |+ -|-|+|.- |++
T Consensus 216 P~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIG--RlP 293 (408)
T COG1219 216 PQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIG--RLP 293 (408)
T ss_pred CccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhc--ccc
Confidence 14444433210 00 13466664 999
Q ss_pred eEEEcCCCCHHHHHHHHH--------HHhhcCCCC------CCCCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHH
Q 014525 334 RKIEFPHPTEEARARILQ--------IHSRKMNVH------PDVNFEELARST--DDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 334 ~~i~~~~p~~~~r~~Il~--------~~~~~~~~~------~~~~l~~la~~~--~g~s~~dl~~l~~~A~~~A~~ 393 (423)
.+..+..++.+...+|+. .|-.-+..+ .+..+..+|+.. .+--.+.|+.++.....-...
T Consensus 294 via~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mf 369 (408)
T COG1219 294 VIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMF 369 (408)
T ss_pred eeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence 999999999999988773 222222222 122355565422 122246788877776655443
No 182
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.38 E-value=3.3e-11 Score=113.50 Aligned_cols=190 Identities=18% Similarity=0.253 Sum_probs=124.7
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchh------hhhh---h------h-chHHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL------VQMF---I------G-DGAKLVRDAFQL 258 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l------~~~~---~------g-~~~~~~~~~~~~ 258 (423)
..++||+|++|.|||++++.++... ..|++.+.++.- .... . . ........+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999754 257888876421 1110 0 1 112223344566
Q ss_pred HHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC--CCCChhhhcCCCcceEE
Q 014525 259 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA--DILDPALMRSGRLDRKI 336 (423)
Q Consensus 259 a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~--~~l~~~l~~~~Rf~~~i 336 (423)
.+...+.+|+|||+|.+... ...-|+.++.+|..+.+ .-+-.++.++|.... =.-|+.+.+ ||. .+
T Consensus 141 lr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~N-eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~ 208 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGN-ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PF 208 (302)
T ss_pred HHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhh-ccCCCeEEeccHHHHHHhccCHHHHh--ccC-Cc
Confidence 77788899999999997642 33446666666665522 222244445543221 124677877 995 44
Q ss_pred EcCCC-CHHHHHHHHHHHhhcCCCCCC--CCH----HHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 014525 337 EFPHP-TEEARARILQIHSRKMNVHPD--VNF----EELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 406 (423)
Q Consensus 337 ~~~~p-~~~~r~~Il~~~~~~~~~~~~--~~l----~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 406 (423)
.+|.- ..++...++..+-..+++... ... ..|-..+.|. -+++..++..|+..|++.+.+.||.+.+..
T Consensus 209 ~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 209 ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 55533 335667788888777776532 222 3445567765 458999999999999999999999988876
No 183
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=1.9e-11 Score=120.50 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=119.6
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE-------E---
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF-------L--- 233 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~-------i--- 233 (423)
..+..+++|+|++.+++.+...+... +.+..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 34578999999999999999887542 2456799999999999999999999873210 0
Q ss_pred -EE----ccch-----------hhhhhh---hc--------hHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCC
Q 014525 234 -KL----AGPQ-----------LVQMFI---GD--------GAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDS 282 (423)
Q Consensus 234 -~v----~~~~-----------l~~~~~---g~--------~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~ 282 (423)
.+ .|+. +..-.. +. ....++.+...+. ...|.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 00 0110 000000 00 1122444443332 345789999999997
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC
Q 014525 283 EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD 362 (423)
Q Consensus 283 ~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~ 362 (423)
+...++.|+..+++ ...++++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+
T Consensus 154 ----~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~ 218 (365)
T PRK07471 154 ----NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPD 218 (365)
T ss_pred ----CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCH
Confidence 45666677766654 33456778888888889899887 77 78999999999999988775421 111
Q ss_pred CCHHHHHHhCCCCcHHHHHH
Q 014525 363 VNFEELARSTDDFNGAQLKA 382 (423)
Q Consensus 363 ~~l~~la~~~~g~s~~dl~~ 382 (423)
..+..++..+.| +++....
T Consensus 219 ~~~~~l~~~s~G-sp~~Al~ 237 (365)
T PRK07471 219 DPRAALAALAEG-SVGRALR 237 (365)
T ss_pred HHHHHHHHHcCC-CHHHHHH
Confidence 112456666655 4443333
No 184
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.37 E-value=7.9e-12 Score=127.57 Aligned_cols=210 Identities=18% Similarity=0.253 Sum_probs=135.5
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF 244 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~ 244 (423)
.+..++|....++.+...+.... ....+++|+|++||||+++|++++... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 45678999999888888664321 234579999999999999999999876 4689999998764332
Q ss_pred h-----hchHHH----HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--CC----CCCC
Q 014525 245 I-----GDGAKL----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FS----SDDR 309 (423)
Q Consensus 245 ~-----g~~~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~~----~~~~ 309 (423)
. |...+. .............++||||||+.| +...|..|.+++..... .. ...+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIPVD 274 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceeeec
Confidence 1 111000 000000112234589999999998 46788899998875321 11 1236
Q ss_pred eEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhcC----CCC----CCCCHHHHHHh
Q 014525 310 IKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRKM----NVH----PDVNFEELARS 371 (423)
Q Consensus 310 v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~----~~~~l~~la~~ 371 (423)
+.+|+||+.. ..+.+.|.. |+. ..|.+|++.. ++...++++++..+ +.. .+..+..|..+
T Consensus 275 ~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (445)
T TIGR02915 275 VRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352 (445)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC
Confidence 7889998854 346666654 443 3566665544 34444566555432 211 12236778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 404 (423)
.+..+.++|++++..|+..+ ....|+.+|+
T Consensus 353 ~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 353 AWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred CCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 88889999999999998654 3345555554
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.7e-11 Score=126.00 Aligned_cols=169 Identities=21% Similarity=0.320 Sum_probs=133.0
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 235 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v 235 (423)
.-.++.++|.++.+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++..
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34678899999999999997743 234578899999999999999999976 5678888
Q ss_pred ccchhhh--hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 014525 236 AGPQLVQ--MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 313 (423)
Q Consensus 236 ~~~~l~~--~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI 313 (423)
+++.++. +|-|+.+..++.+...+....+.||||||||.+.+.....+. ..+..+.|...|.. +.+.+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLAR-------GeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALAR-------GELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHhc-------CCeEEE
Confidence 9888875 589999999999999999888999999999999865433221 23455666666654 456788
Q ss_pred EEcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCC
Q 014525 314 AATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV 359 (423)
Q Consensus 314 ~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 359 (423)
++|...+ .=|++|-| || ..|.+..|+.++-..|++-.-..+..
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 8887432 25899999 99 68889999999999999876655443
No 186
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1.9e-11 Score=118.94 Aligned_cols=169 Identities=13% Similarity=0.228 Sum_probs=113.1
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc--------EEEEccch
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT--------FLKLAGPQ 239 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~--------~i~v~~~~ 239 (423)
+|++|+|++.+++.+...+... ..++.+||+||+|+|||++|+++|+.+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5899999999999999887431 244578999999999999999999987332 22222210
Q ss_pred hhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 315 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~t 315 (423)
+.. ..-..++.+.+.+.. ....|++||++|.+ +...++.|+..|++ +..++++|.+
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 011 112335555554432 34579999999997 34455666666553 3356666767
Q ss_pred cCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCC
Q 014525 316 TNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDD 374 (423)
Q Consensus 316 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g 374 (423)
|+.++.+.|.+++ |+ ..+.|++|+.++....+...+.. ++ +.....++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 7778899999998 77 68999999999988877765431 21 1224455555554
No 187
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=1.3e-12 Score=111.56 Aligned_cols=112 Identities=31% Similarity=0.430 Sum_probs=74.8
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh--hhhchHHH--H-----HHHHHHHHhCCCeEEEECCchhhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM--FIGDGAKL--V-----RDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~--~~g~~~~~--~-----~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
+|+|+||||||||++|+.+|+.++.+++.++++..... +.|...-. . ..+...+ ..+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 48999999999999999999999999999988754322 11111000 0 0000011 14589999999985
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCC-------C-CCC------CeEEEEEcCCCC----CCChhhhcCCCc
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGF-------S-SDD------RIKVIAATNRAD----ILDPALMRSGRL 332 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~-------~-~~~------~v~vI~ttn~~~----~l~~~l~~~~Rf 332 (423)
+++++..|..+++..... . ... ++.+|+|+|+.. .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 578888888888642211 0 011 489999999988 89999999 87
No 188
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.35 E-value=2.1e-11 Score=124.11 Aligned_cols=213 Identities=20% Similarity=0.286 Sum_probs=131.8
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC----cEEEEc------
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA----TFLKLA------ 236 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~----~~i~v~------ 236 (423)
.+|.++.|+..+++.+.-.+ ....+++|+||||+|||++++.++..+.. ..+.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa---------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA---------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhheec---------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 47888899887666543222 24567999999999999999999986521 111110
Q ss_pred cc-----hh-------------hhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHH
Q 014525 237 GP-----QL-------------VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 298 (423)
Q Consensus 237 ~~-----~l-------------~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 298 (423)
+. .+ ....+|.........+. ....++|||||++.+ ++..+..|.+.+
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~---~A~gGvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEIS---LAHNGVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhh---hccCCEEecCCchhC-----------CHHHHHHHHHHH
Confidence 00 00 00112221111111222 233489999999886 557788888888
Q ss_pred HhhcC--------CCCCCCeEEEEEcCCCC---------------------CCChhhhcCCCcceEEEcCCCCHHHH---
Q 014525 299 NQLDG--------FSSDDRIKVIAATNRAD---------------------ILDPALMRSGRLDRKIEFPHPTEEAR--- 346 (423)
Q Consensus 299 ~~~~~--------~~~~~~v~vI~ttn~~~---------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r--- 346 (423)
+...- .....++.+|+|+|+.. .++.+++. |||..+.++.|+.++.
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 65331 11234789999999742 37778998 9999999998753211
Q ss_pred -----------HHHHHHH----hhcCCCCCCCCHHHH----------------HHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 014525 347 -----------ARILQIH----SRKMNVHPDVNFEEL----------------ARSTDDFNGAQLKAVCVEAGMLALRRD 395 (423)
Q Consensus 347 -----------~~Il~~~----~~~~~~~~~~~l~~l----------------a~~~~g~s~~dl~~l~~~A~~~A~~~~ 395 (423)
..+.... .++-.+.....-..+ +....|.|++....+++-|...|..++
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 1111100 000011111111111 123347899999999999999999999
Q ss_pred CCCcCHHHHHHHHHH
Q 014525 396 ATEVNHEDFNEGIIQ 410 (423)
Q Consensus 396 ~~~It~~d~~~al~~ 410 (423)
+..|+.+|+.+|+.-
T Consensus 477 ~~~V~~~hv~eAl~y 491 (506)
T PRK09862 477 SDIITRQHLQEAVSY 491 (506)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999874
No 189
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.35 E-value=1.6e-11 Score=117.79 Aligned_cols=102 Identities=24% Similarity=0.267 Sum_probs=61.8
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC------------CCCCChhhhcCCC
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------ADILDPALMRSGR 331 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~~~~R 331 (423)
|+||||||+|.| +.++..-|...++. .-..+||++||+ |.-++..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 899999999998 66777766666642 223468888885 4568889998 8
Q ss_pred cceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHH
Q 014525 332 LDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCV 385 (423)
Q Consensus 332 f~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~ 385 (423)
+ .+|...+++.++..+|++.++..-.+.- +..+..|+......|-+-..+++.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~ 393 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLIT 393 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhh
Confidence 8 7888899999999999999998766652 223555555443334443333333
No 190
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=2.8e-11 Score=117.13 Aligned_cols=183 Identities=18% Similarity=0.236 Sum_probs=121.2
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE----------EEEcc
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF----------LKLAG 237 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~----------i~v~~ 237 (423)
.|++|+|++.+++.+...+... +-+..+||+||+|+||+++|.++|+.+-+.- ...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999988532 2346899999999999999999999873210 01111
Q ss_pred chhh---------hh--------hhh--------chHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcH
Q 014525 238 PQLV---------QM--------FIG--------DGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDR 288 (423)
Q Consensus 238 ~~l~---------~~--------~~g--------~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~ 288 (423)
+++. ++ ..| -.-..++.+...+.. ..+.|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1111 00 000 001234455444433 34689999999998 34
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 014525 289 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEEL 368 (423)
Q Consensus 289 ~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~l 368 (423)
...+.|+..|++ .+ ++++|..|+.++.+-|.+++ |+ ..+.|++|+.++..+++......-.. +.+...+
T Consensus 139 ~aaNaLLK~LEE----Pp--~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE----PG--NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC----CC--CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 556677777765 22 44677777888999999998 87 78999999999999988875431111 1224677
Q ss_pred HHhCCCCcHHHHHHHHH
Q 014525 369 ARSTDDFNGAQLKAVCV 385 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~ 385 (423)
+....| +++....++.
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 777766 5555544444
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.34 E-value=1.6e-11 Score=121.91 Aligned_cols=144 Identities=27% Similarity=0.427 Sum_probs=90.2
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-------cEEEEccc---
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-------TFLKLAGP--- 238 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-------~~i~v~~~--- 238 (423)
++++.+.+..++.+...+. ..++++|+||||||||++|+.+|..+.. .++.++.+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4566677777777766552 3468999999999999999999998742 12333322
Q ss_pred -hhhhhh----hhch--HHHHHHHHHHHHhC--CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhh--------
Q 014525 239 -QLVQMF----IGDG--AKLVRDAFQLAKEK--SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL-------- 301 (423)
Q Consensus 239 -~l~~~~----~g~~--~~~~~~~~~~a~~~--~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~-------- 301 (423)
+++..+ .|.. .+....++..|... .|.||+||||++... ..+...+.++++.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 222222 1111 12233445556543 478999999998532 22333444444311
Q ss_pred ---------cCCCCCCCeEEEEEcCCCC----CCChhhhcCCCcceEEEcCC
Q 014525 302 ---------DGFSSDDRIKVIAATNRAD----ILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 302 ---------~~~~~~~~v~vI~ttn~~~----~l~~~l~~~~Rf~~~i~~~~ 340 (423)
..+....|+.||+|+|..+ .+|.||+| ||.. |.+.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 1234456899999999887 69999999 9954 55543
No 192
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.9e-11 Score=115.28 Aligned_cols=188 Identities=25% Similarity=0.339 Sum_probs=122.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-hhhhch-HHHHHHHHHHH----HhCCCeEEEECCchhhhcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGDG-AKLVRDAFQLA----KEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-~~~g~~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~ 278 (423)
.+|||.||+|+|||+||+.||+-++.||...+|..+.. .|+|+. +..+..+...| .+...+||||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 36999999999999999999999999999999998865 477764 44455555433 3345689999999999843
Q ss_pred CCC---CCCCCcHHHHHHHHHHHHhh------cCC--CCCC--------CeEEEEEcCC--------------------C
Q 014525 279 RFD---SEVSGDREVQRTMLELLNQL------DGF--SSDD--------RIKVIAATNR--------------------A 319 (423)
Q Consensus 279 r~~---~~~~~~~~~~~~l~~ll~~~------~~~--~~~~--------~v~vI~ttn~--------------------~ 319 (423)
..+ +...+...+|..|+.+++.- .+. ..++ ++++|+..-. +
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 321 22334567899999988631 111 1222 4444443210 0
Q ss_pred ------------------------------------CCCChhhhcCCCcceEEEcCCCCHHHHHHHHH-----------H
Q 014525 320 ------------------------------------DILDPALMRSGRLDRKIEFPHPTEEARARILQ-----------I 352 (423)
Q Consensus 320 ------------------------------------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~-----------~ 352 (423)
--+-|+|. |||+..+.|..++..+..+++. .
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~ 464 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKK 464 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchhhHHHHHHH
Confidence 01346665 4999999999999999888773 1
Q ss_pred HhhcCCCC---CCCCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHh
Q 014525 353 HSRKMNVH---PDVNFEELARST--DDFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 353 ~~~~~~~~---~~~~l~~la~~~--~g~s~~dl~~l~~~A~~~A~~~ 394 (423)
++...++. .+..+..+|+.. .+--.+.|+.++..+.+.|...
T Consensus 465 lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 465 LFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 11111111 122255565432 2333578899998888877544
No 193
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.8e-11 Score=114.95 Aligned_cols=86 Identities=33% Similarity=0.397 Sum_probs=62.6
Q ss_pred CeEEEECCchhhhccCCCCC-CCCcHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEc----CCCCCCChhhhcCCCcc
Q 014525 264 PCIIFIDEIDAIGTKRFDSE-VSGDREVQRTMLELLNQLD-----GFSSDDRIKVIAAT----NRADILDPALMRSGRLD 333 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~l~~ll~~~~-----~~~~~~~v~vI~tt----n~~~~l~~~l~~~~Rf~ 333 (423)
.+||||||||+++.+...+. ..+-..+|+-|+-++..-. +.-..+.+++|++. ..|+.|-|.|.- ||+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 37999999999997764333 2233457888877775322 11223468888875 368889999975 999
Q ss_pred eEEEcCCCCHHHHHHHHH
Q 014525 334 RKIEFPHPTEEARARILQ 351 (423)
Q Consensus 334 ~~i~~~~p~~~~r~~Il~ 351 (423)
..+++..++.++...|+.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999988873
No 194
>PRK15115 response regulator GlrR; Provisional
Probab=99.31 E-value=2.9e-11 Score=123.37 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=129.6
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhc
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD 247 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~ 247 (423)
.++|....+..+.+.+..... ....++|+|++|||||++|++++... +.+|+.++|..+.......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~ 203 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ-----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLES 203 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc-----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHH
Confidence 577777777777665543221 23469999999999999999999876 4799999998764332111
Q ss_pred hHHHHHHHHHH---------------HHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--CCC----
Q 014525 248 GAKLVRDAFQL---------------AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS---- 306 (423)
Q Consensus 248 ~~~~~~~~~~~---------------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~~~---- 306 (423)
.+|.. ......++|||||||.| +...|..|..+++.... ...
T Consensus 204 ------~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 204 ------ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ------HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 12211 11233579999999998 46778888888875321 111
Q ss_pred CCCeEEEEEcCCC-------CCCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHhhcC----CC----CCCCCHHHH
Q 014525 307 DDRIKVIAATNRA-------DILDPALMRSGRL-DRKIEFPHPTE--EARARILQIHSRKM----NV----HPDVNFEEL 368 (423)
Q Consensus 307 ~~~v~vI~ttn~~-------~~l~~~l~~~~Rf-~~~i~~~~p~~--~~r~~Il~~~~~~~----~~----~~~~~l~~l 368 (423)
..++.+|+||+.. ..+.+.+.. |+ ...|.+|++.. ++...++++++..+ +. -++..+..|
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (444)
T PRK15115 267 DIDVRIISATHRDLPKAMARGEFREDLYY--RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRL 344 (444)
T ss_pred eeeEEEEEeCCCCHHHHHHcCCccHHHHH--hhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 2267899998853 123333333 33 23445554433 23334555555432 11 122337788
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 369 ARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 369 a~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
..+.+..+.+++++++..|+..+ ....|+.+++...+
T Consensus 345 ~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 345 MTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 88898899999999999988653 45567777765433
No 195
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.30 E-value=3.7e-11 Score=123.05 Aligned_cols=214 Identities=21% Similarity=0.248 Sum_probs=134.0
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF 244 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~ 244 (423)
.+..++|....+..+.+.+..... ....++++|++||||+++|++++... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 456788888888888776643222 23579999999999999999998875 5799999998764332
Q ss_pred -----hhchHHHHH----HHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--CC----CCCC
Q 014525 245 -----IGDGAKLVR----DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FS----SDDR 309 (423)
Q Consensus 245 -----~g~~~~~~~----~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~~----~~~~ 309 (423)
+|...+... ...........++||||||+.+ +...|..|..+++.... .. ...+
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 278 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTIKVD 278 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeeec
Confidence 221100000 0000111233579999999998 45778888888875321 11 1236
Q ss_pred eEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhcCC----CC----CCCCHHHHHHh
Q 014525 310 IKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRKMN----VH----PDVNFEELARS 371 (423)
Q Consensus 310 v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~~----~~----~~~~l~~la~~ 371 (423)
+.||+||+.. ..+.+.+.. |+. ..|.+|++.. ++...++..++..+. .. .+..+..|..+
T Consensus 279 ~rii~~t~~~l~~~~~~g~~~~~l~~--~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 356 (457)
T PRK11361 279 IRIIAATNRDLQAMVKEGTFREDLFY--RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW 356 (457)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHH--HhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC
Confidence 8899999853 234555544 442 3445554432 333445555554321 11 12236778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
.+..+.+++++++..|+..+ ....|+.+|+...+
T Consensus 357 ~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 357 SWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred CCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 88889999999999988654 45567777775433
No 196
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.29 E-value=2.2e-11 Score=124.96 Aligned_cols=213 Identities=23% Similarity=0.279 Sum_probs=142.5
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh-
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF- 244 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~- 244 (423)
+..++|.......+...+.... .....+++.|++||||+++|++++... +.+|+.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 4568899888888887764321 133579999999999999999999875 5799999998764332
Q ss_pred ----hhchHHH----HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC--C----CCCCe
Q 014525 245 ----IGDGAKL----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--S----SDDRI 310 (423)
Q Consensus 245 ----~g~~~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~--~----~~~~v 310 (423)
+|...+. .............++||||||+.+ +...|..|++++...... . ...++
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 2211000 000001112334689999999998 457788888888753211 1 12267
Q ss_pred EEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCC--HHHHHHHHHHHhhcCCC----C----CCCCHHHHHHhC
Q 014525 311 KVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPT--EEARARILQIHSRKMNV----H----PDVNFEELARST 372 (423)
Q Consensus 311 ~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~~~~----~----~~~~l~~la~~~ 372 (423)
.||+||+.. ..+.+.|.. |+. ..|.+|++. .++...++.+++..... . ++..+..|..+.
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 271 RIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred EEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 889888753 245556665 554 378888877 46777777766644311 1 122367788888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 373 DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 373 ~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
+..|.++|++++..|+..+ ....|+.+|+...+
T Consensus 349 wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred CCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 8889999999999998665 45678888887555
No 197
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.29 E-value=4.1e-11 Score=107.81 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=94.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc------------------------EEEEccchhhhhhhhchHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT------------------------FLKLAGPQLVQMFIGDGAKLVRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~~~~~~~~ 258 (423)
.+..+||+||+|+|||++|+.+++.+... +..+.... .. .....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 45679999999999999999999987432 11111110 00 112344445555
Q ss_pred HHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcce
Q 014525 259 AKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDR 334 (423)
Q Consensus 259 a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~ 334 (423)
+.. ..+.|++|||+|.+. ...++.|+.+++ . ...++.+|++++.+..+.+++.+ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le---~--~~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLE---E--PPPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhc---C--CCCCeEEEEEECChHhChHHHHh--hc-E
Confidence 543 345799999999983 334455555553 3 22355666677777899999998 77 5
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCC
Q 014525 335 KIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDD 374 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g 374 (423)
.+.|++|+.++...++... +++. ..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 8999999999999888776 3332 235666666654
No 198
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.29 E-value=5.1e-11 Score=124.55 Aligned_cols=134 Identities=22% Similarity=0.298 Sum_probs=88.6
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC----C------------CCCCCeEEEEEcCCC--CCCChh
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----F------------SSDDRIKVIAATNRA--DILDPA 325 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~----~------------~~~~~v~vI~ttn~~--~~l~~~ 325 (423)
.++|||||++.| ++..|..|.++|....- . .-.-++.||+++|+. ..++|+
T Consensus 227 GGtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpd 295 (637)
T PRK13765 227 KGVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPA 295 (637)
T ss_pred CcEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHH
Confidence 378899999987 45678888888864321 0 011267899999874 457899
Q ss_pred hhcCCCcc---eEEEcCC---CCHHHHHHHHHHHhhcCCC---CCCCCH---HHHHHh---CCC------CcHHHHHHHH
Q 014525 326 LMRSGRLD---RKIEFPH---PTEEARARILQIHSRKMNV---HPDVNF---EELARS---TDD------FNGAQLKAVC 384 (423)
Q Consensus 326 l~~~~Rf~---~~i~~~~---p~~~~r~~Il~~~~~~~~~---~~~~~l---~~la~~---~~g------~s~~dl~~l~ 384 (423)
|.. ||. ..+.|.. -+.+.+..+++...+.... ...++- ..|.+. ..| ...++|..++
T Consensus 296 L~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 296 LRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 988 775 5666652 2345666666644433321 123332 333321 112 2368999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 385 VEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 385 ~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
+.|...|...+...|+.+|+.+|+..
T Consensus 374 r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 374 RVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHHhhccceecHHHHHHHHHh
Confidence 99999999999999999999988754
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=99.29 E-value=9.9e-11 Score=125.14 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=123.4
Q ss_pred CCCCceEEc--CCCCChhHHHHHHHHHh-----CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhC------CCeEEEE
Q 014525 203 PPKGVLLYG--PPGTGKTLMARACAAQT-----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK------SPCIIFI 269 (423)
Q Consensus 203 ~~~~vLl~G--p~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~------~~~vl~i 269 (423)
|+-+-+..| |++.|||++|+++|+++ +.+++.+|+++..+. ..++.+...+... ++.|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 333567789 99999999999999998 457999999974221 2344443332221 2469999
Q ss_pred CCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHH
Q 014525 270 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 349 (423)
Q Consensus 270 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~I 349 (423)
||+|.| +...|+.|..+++. ...++.+|++||.+..+.+++++ |+ ..+.|++|+.++....
T Consensus 637 DEaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 637 DEADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred ECcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHH
Confidence 999998 34567787777764 33578899999999999999998 86 7899999999999988
Q ss_pred HHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 014525 350 LQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 406 (423)
Q Consensus 350 l~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 406 (423)
++..+...++. ++..+..++..+.| +.+..-++++.++.. ...||.+++..
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~ 749 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFL 749 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 88777654443 23357888888876 556666666655432 13456555443
No 200
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.29 E-value=1.6e-10 Score=117.79 Aligned_cols=221 Identities=20% Similarity=0.306 Sum_probs=144.9
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEEccchh
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAGPQL 240 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v~~~~l 240 (423)
.+.+.+.....|-.++...+... ..+..+++.|-||||||.++..+-..+ ...|+.+|+-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 35566666666666655443320 123369999999999999999998866 357888887554
Q ss_pred hhh----------hhhchHHH------HHHHHHHH-HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC
Q 014525 241 VQM----------FIGDGAKL------VRDAFQLA-KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 303 (423)
Q Consensus 241 ~~~----------~~g~~~~~------~~~~~~~a-~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~ 303 (423)
.+. +.|..... +..-|... ....+.||+|||+|.|..+. |.+|+.++++-.
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt- 536 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT- 536 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc-
Confidence 322 12221111 11111100 12457899999999997542 568888888732
Q ss_pred CCCCCCeEEEEEcCCCCCC----ChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcH-
Q 014525 304 FSSDDRIKVIAATNRADIL----DPALMRSGRLD-RKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNG- 377 (423)
Q Consensus 304 ~~~~~~v~vI~ttn~~~~l----~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~- 377 (423)
....+++||+.+|..+.. .+...+ |++ ..+.|.+++..+..+|+...+.....-......-+|+.....||
T Consensus 537 -~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 537 -LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred -CCCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 344578888888865432 222323 544 38899999999999999999987643333334444554443343
Q ss_pred -HHHHHHHHHHHHHHHHhCC-------CCcCHHHHHHHHHHHHHh
Q 014525 378 -AQLKAVCVEAGMLALRRDA-------TEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 378 -~dl~~l~~~A~~~A~~~~~-------~~It~~d~~~al~~~~~~ 414 (423)
+....+|+.|...|-.+.. ..|+..|+.+|++.+...
T Consensus 614 aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 614 ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 4555689999999877765 678999999999999763
No 201
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.28 E-value=1.6e-10 Score=106.99 Aligned_cols=132 Identities=23% Similarity=0.276 Sum_probs=99.3
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC------------CCCCChhhhcCCC
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------ADILDPALMRSGR 331 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~~~~R 331 (423)
|+||||||+|.| +-++...|...+.. .-..++|++||+ |.-++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 789999999987 55666666665543 113357777775 4568888887 7
Q ss_pred cceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 332 LDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 332 f~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
+ .+|...+++.++..+|+++.+..-.+. .+..++.|......-+.+--..++..|.+.|.++....++.+|+..++.-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 7 577888899999999999998765554 22335566666555566777788999999999999999999999999998
Q ss_pred HHHhh
Q 014525 411 VQAKK 415 (423)
Q Consensus 411 ~~~~~ 415 (423)
+...+
T Consensus 429 FlD~~ 433 (454)
T KOG2680|consen 429 FLDEK 433 (454)
T ss_pred Hhhhh
Confidence 87643
No 202
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.26 E-value=5.2e-11 Score=112.57 Aligned_cols=199 Identities=24% Similarity=0.325 Sum_probs=133.9
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 241 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~ 241 (423)
+...|+.++|....++.+.+....... -...+||.|.+||||-.+|++.+... ..||+.+||..+-
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 446899999999999999886643211 12359999999999999999998866 5799999998664
Q ss_pred hh-----hhhchH--HHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc--CCCC----CC
Q 014525 242 QM-----FIGDGA--KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD--GFSS----DD 308 (423)
Q Consensus 242 ~~-----~~g~~~--~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~--~~~~----~~ 308 (423)
+. .+|..+ .....+|+.+.. +.+|+|||..+ ++..|..++.+|+... .... .-
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceEEE
Confidence 43 233322 233356766644 68999999887 5788999999998632 1111 22
Q ss_pred CeEEEEEcCCC-------CCCChhhhcCCCcceEEEcCCCCHHHH----HHHHH----HHhhcCCCC-CCC---CHHHHH
Q 014525 309 RIKVIAATNRA-------DILDPALMRSGRLDRKIEFPHPTEEAR----ARILQ----IHSRKMNVH-PDV---NFEELA 369 (423)
Q Consensus 309 ~v~vI~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p~~~~r----~~Il~----~~~~~~~~~-~~~---~l~~la 369 (423)
+|.||+||..+ ..+...+.- |+. +..+..|...+| .-+.+ .+..+++.. +.. -+..|.
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 79999999753 234444444 553 444444444333 22333 334444433 222 257778
Q ss_pred HhCCCCcHHHHHHHHHHHHHHH
Q 014525 370 RSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 370 ~~~~g~s~~dl~~l~~~A~~~A 391 (423)
.+.|..+.+++.+++.+|+...
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHh
Confidence 8888889999999999998664
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.26 E-value=5.2e-11 Score=100.35 Aligned_cols=126 Identities=32% Similarity=0.474 Sum_probs=80.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCc---EEEEccchhhhhh--------------hhchHHHHHHHHHHHHhCCCeE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAGPQLVQMF--------------IGDGAKLVRDAFQLAKEKSPCI 266 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~---~i~v~~~~l~~~~--------------~g~~~~~~~~~~~~a~~~~~~v 266 (423)
+.+++|+||||||||++++.+|..+... ++.++++...... ..........++..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999764 8888887543321 1233445567788888877899
Q ss_pred EEECCchhhhccCCCCCCCCcHHHHHHHHHH--HHhhcCCCCCCCeEEEEEcCCC-CCCChhhhcCCCcceEEEcCCC
Q 014525 267 IFIDEIDAIGTKRFDSEVSGDREVQRTMLEL--LNQLDGFSSDDRIKVIAATNRA-DILDPALMRSGRLDRKIEFPHP 341 (423)
Q Consensus 267 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~l--l~~~~~~~~~~~v~vI~ttn~~-~~l~~~l~~~~Rf~~~i~~~~p 341 (423)
|++||++.+... ......... ...........+..+|+++|.. ...+..+.. |++..+.++.+
T Consensus 82 iiiDei~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDA----------EQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCH----------HHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998532 111111110 0000011223467788888862 333444444 78888777654
No 204
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.1e-10 Score=113.93 Aligned_cols=147 Identities=24% Similarity=0.380 Sum_probs=100.8
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---------------------
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN--------------------- 229 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~--------------------- 229 (423)
+++|.+.....+..++...- ..|..+||+||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 56788888888888775321 1233599999999999999999999885
Q ss_pred ---CcEEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc
Q 014525 230 ---ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 302 (423)
Q Consensus 230 ---~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~ 302 (423)
..++.++.++....- .....++.+...... .+..|++|||+|.+. .+.++.+...+..
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-----------~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-----------EDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhcc--
Confidence 356666666543211 122334444333322 346899999999984 3555666666543
Q ss_pred CCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHH
Q 014525 303 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 349 (423)
Q Consensus 303 ~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~I 349 (423)
+..++.+|++||.+..+-+.+.+ |+ ..+.|++|+.......
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 44678899999999999999998 77 6788887655444433
No 205
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.24 E-value=2.8e-10 Score=121.25 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=137.2
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHh--------hhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-------CcEEE
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQ--------KLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-------ATFLK 234 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~--------~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-------~~~i~ 234 (423)
..|.|.+.+++.|.-++.-......... ...++..-+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4577777777777655543321100000 01122334799999999999999999998653 34444
Q ss_pred EccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc------C--CCC
Q 014525 235 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD------G--FSS 306 (423)
Q Consensus 235 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~------~--~~~ 306 (423)
+.+..... +.+...+....--........++++|||++.+ +...|..|.+++++-. + ..-
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL 597 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVLANGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIVATL 597 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEEcCCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcceec
Confidence 44443321 11100000000000111233479999999997 4567788888886532 1 112
Q ss_pred CCCeEEEEEcCCCC-------------CCChhhhcCCCcceEE-EcCCCCHHHHHHHHHHHhhcC---------------
Q 014525 307 DDRIKVIAATNRAD-------------ILDPALMRSGRLDRKI-EFPHPTEEARARILQIHSRKM--------------- 357 (423)
Q Consensus 307 ~~~v~vI~ttn~~~-------------~l~~~l~~~~Rf~~~i-~~~~p~~~~r~~Il~~~~~~~--------------- 357 (423)
..++.||||+|+.. .|++++++ |||.++ .++.|+.+.=..|..+.++..
T Consensus 598 ~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~ 675 (915)
T PTZ00111 598 KAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTY 675 (915)
T ss_pred CCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccch
Confidence 34789999999742 37899999 998865 456777654444433322110
Q ss_pred ------------------------------------CCCCCCC---HHHHHH-----hC---------------------
Q 014525 358 ------------------------------------NVHPDVN---FEELAR-----ST--------------------- 372 (423)
Q Consensus 358 ------------------------------------~~~~~~~---l~~la~-----~~--------------------- 372 (423)
.+.+.+. -..|.. +.
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~ 755 (915)
T PTZ00111 676 DRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDD 755 (915)
T ss_pred hccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccc
Confidence 0000000 111110 10
Q ss_pred ----------CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 373 ----------DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 373 ----------~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
...++++|+++++.|.+.|..+-+..||.+|+..|+.-+..+
T Consensus 756 ~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~s 807 (915)
T PTZ00111 756 LYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSS 807 (915)
T ss_pred cccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHH
Confidence 125689999999999999999999999999999999988653
No 206
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.9e-12 Score=123.10 Aligned_cols=213 Identities=19% Similarity=0.299 Sum_probs=123.7
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-----------------
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN----------------- 229 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~----------------- 229 (423)
.+|.||+|++.++..+.-+.. ..+++||+||||||||++|+.+..-+.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 489999999999999887652 356899999999999999998877441
Q ss_pred ------------CcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHH
Q 014525 230 ------------ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 297 (423)
Q Consensus 230 ------------~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 297 (423)
.||..-+-+.-....+|.+... .-..+.....+||||||+-.+- ..+.+.|.+=
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p---~PGeIsLAH~GVLFLDElpef~-----------~~iLe~LR~P 306 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVP---RPGEISLAHNGVLFLDELPEFK-----------RSILEALREP 306 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCC---CCCceeeecCCEEEeeccchhh-----------HHHHHHHhCc
Confidence 0110000000000011111000 0000111223899999996641 2222222222
Q ss_pred HHhhcC--------CCCCCCeEEEEEcCCC-----------------------CCCChhhhcCCCcceEEEcCCCCHHHH
Q 014525 298 LNQLDG--------FSSDDRIKVIAATNRA-----------------------DILDPALMRSGRLDRKIEFPHPTEEAR 346 (423)
Q Consensus 298 l~~~~~--------~~~~~~v~vI~ttn~~-----------------------~~l~~~l~~~~Rf~~~i~~~~p~~~~r 346 (423)
|+.... +....++.+|+++|+. ..+...|++ |+|..+.++.++..++
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 221110 1122367788999862 235677777 9999999998763222
Q ss_pred --------------HHHHHHH------hhcCCCCCCCC----------------HHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 347 --------------ARILQIH------SRKMNVHPDVN----------------FEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 347 --------------~~Il~~~------~~~~~~~~~~~----------------l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
..+++.+ ..+.......+ +..-+-..-++|.+....+++-|..+
T Consensus 385 ~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTi 464 (490)
T COG0606 385 IRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTI 464 (490)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhh
Confidence 2222211 11110121111 22223334568889999999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHH
Q 014525 391 ALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 391 A~~~~~~~It~~d~~~al~~ 410 (423)
|--.+...|...|+.+|+.-
T Consensus 465 ADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 465 ADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred hcccCcchhhHHHHHHHHhh
Confidence 98888999999999999863
No 207
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.1e-10 Score=114.05 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=102.6
Q ss_pred CcccccC-chHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc---------------
Q 014525 168 DYNDIGG-LEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT--------------- 231 (423)
Q Consensus 168 ~~~~i~G-~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~--------------- 231 (423)
.|+.|+| ++.+++.+...+... +.|..+||+||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777888 888889888877421 245678999999999999999999987321
Q ss_pred ---------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHH
Q 014525 232 ---------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 298 (423)
Q Consensus 232 ---------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 298 (423)
+..+... +.. ..-..++.+.+.+. ...+.|++|||+|.+ +.+.++.|+..+
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 1111110 000 11233444444433 234579999999998 345566666666
Q ss_pred HhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHH
Q 014525 299 NQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQI 352 (423)
Q Consensus 299 ~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~ 352 (423)
++ +..++++|++|+.+..+.|++++ |. ..++|++|+.++...+++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 54 34567777788888899999998 77 7899999999888777753
No 208
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.6e-10 Score=111.00 Aligned_cols=130 Identities=21% Similarity=0.318 Sum_probs=91.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc------------------------EEEEccchhhhhhhhchHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT------------------------FLKLAGPQLVQMFIGDGAKLVRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~~~~~~~~ 258 (423)
.+..+||+||+|+|||++|+++|+.+.+. ++.+...+- +. .-.-..++++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 45679999999999999999999987431 111111000 00 0122445555554
Q ss_pred HHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcce
Q 014525 259 AKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDR 334 (423)
Q Consensus 259 a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~ 334 (423)
+.. ....|++||++|.+ +.+..+.|+..+++ +..++++|.+|+.++.+.|.+++ |+ .
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~ 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC-Q 158 (328)
T ss_pred HhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-e
Confidence 443 44679999999998 44556677766664 34678888999999999999999 88 5
Q ss_pred EEEcCCCCHHHHHHHHHHHh
Q 014525 335 KIEFPHPTEEARARILQIHS 354 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~~~ 354 (423)
.+.|++|+.++....+....
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhc
Confidence 69999999998888877543
No 209
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.22 E-value=2.4e-10 Score=111.24 Aligned_cols=225 Identities=23% Similarity=0.285 Sum_probs=140.0
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEcc---------
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG--------- 237 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~--------- 237 (423)
..|.-++|++..+..+.-....| .-.++||.|+.|||||+++|+|+.-|.-.-+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 56788999999988876654322 23589999999999999999999988422111122
Q ss_pred ----ch-------------------hhhhhhhchHHH-H-----HHH-------HH--HHHhCCCeEEEECCchhhhccC
Q 014525 238 ----PQ-------------------LVQMFIGDGAKL-V-----RDA-------FQ--LAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 238 ----~~-------------------l~~~~~g~~~~~-~-----~~~-------~~--~a~~~~~~vl~iDEid~l~~~r 279 (423)
.. ++..-.|.++.. + ... |+ ...+...+|+++||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 11 111112223321 1 011 11 111223389999999987
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhc--------CCCCCCCeEEEEEcCCC-CCCChhhhcCCCcceEEEcCCC-CHHHHHHH
Q 014525 280 FDSEVSGDREVQRTMLELLNQLD--------GFSSDDRIKVIAATNRA-DILDPALMRSGRLDRKIEFPHP-TEEARARI 349 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~~~v~vI~ttn~~-~~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~I 349 (423)
+..++..|+..+.... .+....++++|+|+|+. ..|.|.|+. ||...+.+..| +.++|.+|
T Consensus 157 -------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 157 -------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred -------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHH
Confidence 4578888888887641 22344589999999975 358999998 99999988755 56888888
Q ss_pred HHHHhhcCCCCCCC--------------------------C-----HHHHHHhCC--CCc-HHHHHHHHHHHHHHHHHhC
Q 014525 350 LQIHSRKMNVHPDV--------------------------N-----FEELARSTD--DFN-GAQLKAVCVEAGMLALRRD 395 (423)
Q Consensus 350 l~~~~~~~~~~~~~--------------------------~-----l~~la~~~~--g~s-~~dl~~l~~~A~~~A~~~~ 395 (423)
++....- ...++. . ...++..+. +.. .+.-..+++.|...|...+
T Consensus 228 i~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~G 306 (423)
T COG1239 228 IRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRG 306 (423)
T ss_pred HHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcC
Confidence 8755432 111110 0 111111110 111 1222234556666777788
Q ss_pred CCCcCHHHHHHHHHHHHHhhhhh
Q 014525 396 ATEVNHEDFNEGIIQVQAKKKAS 418 (423)
Q Consensus 396 ~~~It~~d~~~al~~~~~~~~~~ 418 (423)
+..++.+|++.|..-........
T Consensus 307 r~~v~~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 307 RTEVEEEDIREAAELALLHRRRR 329 (423)
T ss_pred ceeeehhhHHHHHhhhhhhhhcc
Confidence 99999999999999887765543
No 210
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=8.7e-10 Score=107.95 Aligned_cols=226 Identities=21% Similarity=0.232 Sum_probs=151.3
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC----C-cEEEEccchhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN----A-TFLKLAGPQLVQ 242 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~----~-~~i~v~~~~l~~ 242 (423)
.-..++|.+..+..+.+++..++.. +.++++++.|-||||||.+...+...+. . ..++++|..+..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 3467899999999999998776654 5678899999999999999987776652 2 447888865321
Q ss_pred ------h----h----hhchHH-HHHHHHHH-HHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC
Q 014525 243 ------M----F----IGDGAK-LVRDAFQL-AKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS 305 (423)
Q Consensus 243 ------~----~----~g~~~~-~~~~~~~~-a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~ 305 (423)
+ + .+.+.+ .....|+. ... ..+-|+++||+|.|+... +..++.++..- ..
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp--~l 285 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWP--KL 285 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhcc--cC
Confidence 1 1 111111 11122322 222 246899999999997432 23555555442 13
Q ss_pred CCCCeEEEEEcCCCCCCChhhh---c-CCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC--CCHHHHHHhCCCCcH--
Q 014525 306 SDDRIKVIAATNRADILDPALM---R-SGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD--VNFEELARSTDDFNG-- 377 (423)
Q Consensus 306 ~~~~v~vI~ttn~~~~l~~~l~---~-~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~--~~l~~la~~~~g~s~-- 377 (423)
...++++|+.+|..+.-|..|- . .+--+..+.|+|++.++..+|+...+........ ..+...|+...|.||
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDl 365 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDL 365 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhH
Confidence 3457888999997665443332 2 1233568999999999999999999987766533 336677888888776
Q ss_pred HHHHHHHHHHHHHHHHhCC----------------CCcCHHHHHHHHHHHHHhh
Q 014525 378 AQLKAVCVEAGMLALRRDA----------------TEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 378 ~dl~~l~~~A~~~A~~~~~----------------~~It~~d~~~al~~~~~~~ 415 (423)
+.+-.+|+.|.-++....+ ..|..+++..++.++....
T Consensus 366 RkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 366 RKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 3344478888887765532 3466889999998886533
No 211
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=4.9e-10 Score=116.96 Aligned_cols=221 Identities=11% Similarity=0.159 Sum_probs=121.1
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEE-Ec---
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK-LA--- 236 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~-v~--- 236 (423)
.+...+..+++++|++..+..+..++..... +..+.+.++|+||||||||++++.+|+.++..++. ++
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 3445668999999999999999988754221 22344459999999999999999999988754433 11
Q ss_pred cchhhhhh---------h---hchHHHHHHHHHHHH----------hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 237 GPQLVQMF---------I---GDGAKLVRDAFQLAK----------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 237 ~~~l~~~~---------~---g~~~~~~~~~~~~a~----------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
+......| + .......+.+...+. .....|||||||+.+... .. . .+
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~-~---~l 215 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DT-R---AL 215 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hH-H---HH
Confidence 11000000 0 011122223333332 134579999999987532 11 1 22
Q ss_pred HHHHH-hhcCCCCCCCeEEEEEcC-CCC--------C------CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCC
Q 014525 295 LELLN-QLDGFSSDDRIKVIAATN-RAD--------I------LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMN 358 (423)
Q Consensus 295 ~~ll~-~~~~~~~~~~v~vI~ttn-~~~--------~------l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~ 358 (423)
..+|. ... ..+.+.+|++++ .+. . +.+++++..|. .+|.|++.+.......|...+....
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 22332 111 112333333333 221 1 33777753355 4899999999997777776665421
Q ss_pred C--CCC------CCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-------hCCCCcCHHHHHHHH
Q 014525 359 V--HPD------VNFEELARSTDDFNGAQLKAVCVEAGMLALR-------RDATEVNHEDFNEGI 408 (423)
Q Consensus 359 ~--~~~------~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~-------~~~~~It~~d~~~al 408 (423)
. ..+ ..+..|+... .+|++.++....+.+.. .+...++..+...+.
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred hccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 1 111 1345555543 44666665554444332 223455555555543
No 212
>PRK08116 hypothetical protein; Validated
Probab=99.16 E-value=2.1e-10 Score=108.69 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=80.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhch----HHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG----AKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~----~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
+.+++|+|++|||||+||.++++++ +.+++.++.++++..+.... ......++.... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999987 67889999888776543211 111122333332 34699999996521
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-CC----CChhhhcCCCc---ceEEEcCCCCH
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-DI----LDPALMRSGRL---DRKIEFPHPTE 343 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~-~~----l~~~l~~~~Rf---~~~i~~~~p~~ 343 (423)
.....+..++++++.... .+..+|.|||.+ .. ++..+.+ |+ ...|.++.++.
T Consensus 192 ---------~t~~~~~~l~~iin~r~~----~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRYR----KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 234566778888876421 223477888854 22 4566666 64 34677777765
No 213
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.16 E-value=7.5e-11 Score=100.59 Aligned_cols=127 Identities=26% Similarity=0.463 Sum_probs=84.9
Q ss_pred cCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEccchhhhhhhhchH
Q 014525 173 GGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLVQMFIGDGA 249 (423)
Q Consensus 173 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~~l~~~~~g~~~ 249 (423)
+|....++.+++.+..... ....|+|+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 5888899999998865432 345799999999999999999999874 467777776542
Q ss_pred HHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-C------CC
Q 014525 250 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-D------IL 322 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~-~------~l 322 (423)
..+++.+ ..++|||+|+|.+ +.+.|..+.+++.... ..++.+|+++..+ . .+
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~~ 120 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGRF 120 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHSTH
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccch
Confidence 1233333 5689999999998 5677888888887632 3456777777643 2 35
Q ss_pred ChhhhcCCCcc-eEEEcCCC
Q 014525 323 DPALMRSGRLD-RKIEFPHP 341 (423)
Q Consensus 323 ~~~l~~~~Rf~-~~i~~~~p 341 (423)
++.|.. |+. ..|.+|++
T Consensus 121 ~~~L~~--~l~~~~i~lPpL 138 (138)
T PF14532_consen 121 SPDLYY--RLSQLEIHLPPL 138 (138)
T ss_dssp HHHHHH--HCSTCEEEE---
T ss_pred hHHHHH--HhCCCEEeCCCC
Confidence 566665 554 46777653
No 214
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.15 E-value=7.6e-10 Score=99.13 Aligned_cols=178 Identities=19% Similarity=0.254 Sum_probs=109.5
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-C----CcEEEE
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-N----ATFLKL 235 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-~----~~~i~v 235 (423)
+++..+..+.||+|.++.+..+.-.... | .-.+++|.||||||||+-+.++|+++ | -.++..
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 3445667899999999999988765432 2 22379999999999999999999987 3 245666
Q ss_pred ccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 236 AGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 236 ~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
|.|+-.+-. -....+ ..|..-+- +...||++||.|.+. ...|..+...++-.. +.+.
T Consensus 85 NASdeRGID--vVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS-----~ttR 145 (333)
T KOG0991|consen 85 NASDERGID--VVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYS-----NTTR 145 (333)
T ss_pred cCccccccH--HHHHHH-HHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHc-----ccch
Confidence 666422110 011111 23333222 223699999999984 234556655554322 2345
Q ss_pred EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhh--cCCCCCCCCHHHHHHhCCC
Q 014525 312 VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR--KMNVHPDVNFEELARSTDD 374 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~~~g 374 (423)
++.++|....+-..+.+ |+ ..+.|..++..+...-+....+ +.+.. +..++.+.-...|
T Consensus 146 FalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt-~dgLeaiifta~G 206 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYT-DDGLEAIIFTAQG 206 (333)
T ss_pred hhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCC-cchHHHhhhhccc
Confidence 78888888887777777 66 4556666676665554443333 33333 2336666555554
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.14 E-value=1.3e-10 Score=95.70 Aligned_cols=115 Identities=27% Similarity=0.342 Sum_probs=64.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccc-hhhh-hhhhchHHHH-HHHHHHHHh-CCCeEEEECCchhhhccCCC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP-QLVQ-MFIGDGAKLV-RDAFQLAKE-KSPCIIFIDEIDAIGTKRFD 281 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~-~l~~-~~~g~~~~~~-~~~~~~a~~-~~~~vl~iDEid~l~~~r~~ 281 (423)
++||.|+||+|||++|+++|+.++..|.+|.+. +++- ...|..--.. ...|...+. --..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr------- 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR------- 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG-------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc-------
Confidence 589999999999999999999999999998764 3322 2222100000 000000000 0025999999998
Q ss_pred CCCCCcHHHHHHHHHHHHhhcC------CCCCCCeEEEEEcCCCC-----CCChhhhcCCCcc
Q 014525 282 SEVSGDREVQRTMLELLNQLDG------FSSDDRIKVIAATNRAD-----ILDPALMRSGRLD 333 (423)
Q Consensus 282 ~~~~~~~~~~~~l~~ll~~~~~------~~~~~~v~vI~ttn~~~-----~l~~~l~~~~Rf~ 333 (423)
+.+..|..+++.+.+..- ..-...++||||.|+.+ .|+.+++. ||-
T Consensus 74 ----appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 74 ----APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ----S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ----CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 467889999999986432 22234789999999865 48888888 873
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.13 E-value=9.9e-10 Score=106.54 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=107.6
Q ss_pred Ccc-cccCchHHHHHHHHHHHccccChhHHhhhCCC-CCCCceEEcCCCCChhHHHHHHHHHhCC-------cEEEEcc-
Q 014525 168 DYN-DIGGLEKQIQELVEAIVLPMTHKERFQKLGVR-PPKGVLLYGPPGTGKTLMARACAAQTNA-------TFLKLAG- 237 (423)
Q Consensus 168 ~~~-~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLl~Gp~GtGKT~la~ala~~l~~-------~~i~v~~- 237 (423)
-|+ ++.|+++++..+.+.+..... |.. ..+.++|+||||||||++|++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 355 899999999999998865442 222 2356899999999999999999999854 7777754
Q ss_pred ---chhhhh---------------------------------------hhhc---------------------------h
Q 014525 238 ---PQLVQM---------------------------------------FIGD---------------------------G 248 (423)
Q Consensus 238 ---~~l~~~---------------------------------------~~g~---------------------------~ 248 (423)
+.+.+. |.|+ .
T Consensus 120 ~~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~ 199 (361)
T smart00763 120 GEESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDEN 199 (361)
T ss_pred CCCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCC
Confidence 222111 0000 0
Q ss_pred HHHHHHHHHH----------------------HHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC
Q 014525 249 AKLVRDAFQL----------------------AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS 306 (423)
Q Consensus 249 ~~~~~~~~~~----------------------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~ 306 (423)
...+..+... .-+...+|+-|+|+.+. +.+++..|+.++++..-...
T Consensus 200 ~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~ 268 (361)
T smart00763 200 NQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGT 268 (361)
T ss_pred cccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecC
Confidence 0001111110 00111367888888874 67788888888876432111
Q ss_pred ------CCCeEEEEEcCCC-------CCCChhhhcCCCcceEEEcCCC-CHHHHHHHHHHHhhc
Q 014525 307 ------DDRIKVIAATNRA-------DILDPALMRSGRLDRKIEFPHP-TEEARARILQIHSRK 356 (423)
Q Consensus 307 ------~~~v~vI~ttn~~-------~~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~Il~~~~~~ 356 (423)
.-+.+||++||.. .....+|++ |+. .+.+|.| +..+-.+|.+..+..
T Consensus 269 ~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 269 GGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred CcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 1246789999976 245788988 996 8888865 457777888777753
No 217
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.13 E-value=7.1e-10 Score=113.04 Aligned_cols=210 Identities=21% Similarity=0.232 Sum_probs=128.2
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhh--
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI-- 245 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~-- 245 (423)
.++|.......+...+.... .....++++|++||||+++|++++... +.+|+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 46677777777766553211 234579999999999999999998866 47999999987643321
Q ss_pred ---hchHHHH----HHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC--C----CCCCeEE
Q 014525 246 ---GDGAKLV----RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--S----SDDRIKV 312 (423)
Q Consensus 246 ---g~~~~~~----~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~--~----~~~~v~v 312 (423)
|...+.. ...........+++||||||+.| +...|..+..++...... . ...++.+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRL 277 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeeceEE
Confidence 1110000 00000112334689999999998 456788888888653211 1 1125778
Q ss_pred EEEcCCCC-------CCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHhhcC----CC----CCCCCHHHHHHhCCC
Q 014525 313 IAATNRAD-------ILDPALMRSGRL-DRKIEFPHPTE--EARARILQIHSRKM----NV----HPDVNFEELARSTDD 374 (423)
Q Consensus 313 I~ttn~~~-------~l~~~l~~~~Rf-~~~i~~~~p~~--~~r~~Il~~~~~~~----~~----~~~~~l~~la~~~~g 374 (423)
|+||+.+- .+.+.|.. |+ ...+.+|++.. ++...+++.++..+ +. -.+..+..|..+.+.
T Consensus 278 i~~t~~~~~~~~~~~~~~~~l~~--~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wp 355 (441)
T PRK10365 278 IAATHRDLAAEVNAGRFRQDLYY--RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 (441)
T ss_pred EEeCCCCHHHHHHcCCchHHHHH--HhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCC
Confidence 88887531 23333333 33 23555555543 34455666665542 11 122336778888888
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG 407 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~a 407 (423)
.+.++++++++.|+..+ ....|+.+|+...
T Consensus 356 gN~reL~~~~~~~~~~~---~~~~i~~~~l~~~ 385 (441)
T PRK10365 356 GNIRELENAVERAVVLL---TGEYISERELPLA 385 (441)
T ss_pred CHHHHHHHHHHHHHHhC---CCCccchHhCchh
Confidence 89999999999988653 4456777776543
No 218
>PRK08181 transposase; Validated
Probab=99.13 E-value=1.1e-09 Score=103.46 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=69.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhch-HHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
..+++|+||||||||+||.++++++ +..+++++.++++..+.... .......+... ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC--
Confidence 4679999999999999999999865 67788888888877653221 11122333333 3457999999988642
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 280 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
+...+..++++++....- -.+|.|||.+
T Consensus 182 -------~~~~~~~Lf~lin~R~~~-----~s~IiTSN~~ 209 (269)
T PRK08181 182 -------DQAETSVLFELISARYER-----RSILITANQP 209 (269)
T ss_pred -------CHHHHHHHHHHHHHHHhC-----CCEEEEcCCC
Confidence 345567888888864331 1377888854
No 219
>PRK12377 putative replication protein; Provisional
Probab=99.11 E-value=6.2e-10 Score=103.83 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchHH--HHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAK--LVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~~--~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
..+++|+||||||||+||.++|+.+ +..++.++.++++......... ....++... ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3589999999999999999999988 5778888888877654321110 111233333 345799999997643
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.+...+..|+++++.-.. ....+|.|||..
T Consensus 177 -------~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 177 -------ETKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred -------CCHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 234556788888876322 223468888853
No 220
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.11 E-value=9.7e-10 Score=96.31 Aligned_cols=134 Identities=25% Similarity=0.347 Sum_probs=87.9
Q ss_pred CchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-----------------------
Q 014525 174 GLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA----------------------- 230 (423)
Q Consensus 174 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~----------------------- 230 (423)
|++..++.+...+... +.|..+||+||+|+||+++|.++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7888888888877431 34567999999999999999999998722
Q ss_pred cEEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC
Q 014525 231 TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS 306 (423)
Q Consensus 231 ~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~ 306 (423)
.++.++...... .-....++.+...+.. ..+.|++||++|.+ ..+.++.|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 122222211100 0122444455544433 34679999999998 45778888888875 4
Q ss_pred CCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCC
Q 014525 307 DDRIKVIAATNRADILDPALMRSGRLDRKIEFPHP 341 (423)
Q Consensus 307 ~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 341 (423)
..++++|++|+.++.+.|.+++ |. ..+.|+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 4688899999999999999999 87 67777765
No 221
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1e-09 Score=108.58 Aligned_cols=143 Identities=23% Similarity=0.373 Sum_probs=96.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh-hhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL-VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 281 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l-~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~ 281 (423)
+-.++||.||||+|||.||..+|...+.||+.+-.++- ++..-...-..++..|+.+++.+-+||++|+|+.|..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD---- 612 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD---- 612 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc----
Confidence 34579999999999999999999999999999765543 2221122345678999999999999999999999862
Q ss_pred CCCCCcHHHHHHHHHHH-HhhcCCCCCC-CeEEEEEcCCCCCCC-hhhhcCCCcceEEEcCCCCH-HHHHHHHHH
Q 014525 282 SEVSGDREVQRTMLELL-NQLDGFSSDD-RIKVIAATNRADILD-PALMRSGRLDRKIEFPHPTE-EARARILQI 352 (423)
Q Consensus 282 ~~~~~~~~~~~~l~~ll-~~~~~~~~~~-~v~vI~ttn~~~~l~-~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~ 352 (423)
...- .|...+.++|.| -.+....+++ +.+|++||...+.|. -.+.. -|+..+.+|..+. ++..+++..
T Consensus 613 ~vpI-GPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 613 YVPI-GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cccc-CchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 1111 233344444433 3334444444 566777776544332 12333 6888999997766 666666653
No 222
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=8e-09 Score=99.98 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc------------------------EEEEccchhhhhhhhchHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT------------------------FLKLAGPQLVQMFIGDGAKLVRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~~~~~~~~ 258 (423)
-+..+||+||+|+||+++|+++|+.+-+. ++.+...+ ++. -+...++.+...
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHH
Confidence 35689999999999999999999987321 11111100 000 123344555444
Q ss_pred HH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcce
Q 014525 259 AK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDR 334 (423)
Q Consensus 259 a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~ 334 (423)
+. .....|++||++|.+ +.+.++.|+..|++ +..++++|.+|+.++.+.|.+++ |. .
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----Pp~~~~fiL~t~~~~~llpTI~S--RC-~ 159 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----PRPNTYFLLQADLSAALLPTIYS--RC-Q 159 (325)
T ss_pred HhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhCchHHHh--hc-e
Confidence 43 244579999999998 34556677776664 55678889999999999999998 87 6
Q ss_pred EEEcCCCCHHHHHHHHHHH
Q 014525 335 KIEFPHPTEEARARILQIH 353 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~~ 353 (423)
.+.|++|+.++..+.+...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 8899999999888777654
No 223
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.01 E-value=9.2e-09 Score=107.03 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=134.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccchhhhhhhhchHHHHHHHHH---------HHHhCCCeEEEECCch
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQMFIGDGAKLVRDAFQ---------LAKEKSPCIIFIDEID 273 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~l~~~~~g~~~~~~~~~~~---------~a~~~~~~vl~iDEid 273 (423)
+||+|.|++|||||+++++++..+. .||+.+..+--....+|... +..... .+.....+||||||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD--LAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch--HHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 5899999999999999999999985 48887776554444555421 111110 0111223799999999
Q ss_pred hhhccCCCCCCCCcHHHHHHHHHHHHhhcC--------CCCCCCeEEEEEcCCC---CCCChhhhcCCCcceEEEcCCCC
Q 014525 274 AIGTKRFDSEVSGDREVQRTMLELLNQLDG--------FSSDDRIKVIAATNRA---DILDPALMRSGRLDRKIEFPHPT 342 (423)
Q Consensus 274 ~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--------~~~~~~v~vI~ttn~~---~~l~~~l~~~~Rf~~~i~~~~p~ 342 (423)
.+ ++.++..|.+-++.... +....++++|+|.|.. ..|+++++. ||+..+.++.|+
T Consensus 104 ~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~ 170 (584)
T PRK13406 104 RL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLA 170 (584)
T ss_pred cC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCC
Confidence 86 56778888888875321 2233578899985532 348999999 999999999887
Q ss_pred HHHHH-------HHHHHH--hhcCCCCCCCCHHHHHHh--CCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 343 EEARA-------RILQIH--SRKMNVHPDVNFEELARS--TDDF-NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 343 ~~~r~-------~Il~~~--~~~~~~~~~~~l~~la~~--~~g~-s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
..+.. .|.... +....+... .+..++.. ..|. |.+.-..+++-|..+|..+++..|+.+|+.+|+.-
T Consensus 171 ~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 171 LRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred hHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 65322 233322 222222211 13333322 2354 67777889999999999999999999999999999
Q ss_pred HHHhhh
Q 014525 411 VQAKKK 416 (423)
Q Consensus 411 ~~~~~~ 416 (423)
+.....
T Consensus 250 vL~hR~ 255 (584)
T PRK13406 250 VLAPRA 255 (584)
T ss_pred HHHhhc
Confidence 988665
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.01 E-value=2.7e-09 Score=99.30 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhch---HHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG---AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~---~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
.+++|+||||||||+|+.++|+++ +..++.++.++++..+.+.. ......++.... .+.+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 479999999999999999999988 67888888888876543321 111223344333 45799999998853
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
........+.++++.-- ..+..+|.|||..
T Consensus 176 -------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 176 -------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred -------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 12334457778887532 1233478888853
No 225
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=3.9e-09 Score=102.85 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=90.9
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEE---EEccchh-----hhh-------hh---------------------
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFL---KLAGPQL-----VQM-------FI--------------------- 245 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i---~v~~~~l-----~~~-------~~--------------------- 245 (423)
+.|..+||+||+|+||+++|+++|+.+.+.-- .-.|... +.. ++
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45678999999999999999999998743210 0011100 000 00
Q ss_pred ---h---------chHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 014525 246 ---G---------DGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR 309 (423)
Q Consensus 246 ---g---------~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 309 (423)
| -.-..++.+...+. .....|++||++|.+ +.+..+.|+..|++ +..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLEE-----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCcC
Confidence 0 01233444444433 234579999999998 34556666666653 5568
Q ss_pred eEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHH
Q 014525 310 IKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIH 353 (423)
Q Consensus 310 v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~ 353 (423)
+++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999999 88 78999999999888887653
No 226
>PRK06526 transposase; Provisional
Probab=99.00 E-value=1.1e-09 Score=102.84 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=66.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhch-HHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
+.+++|+||||||||+||.+++.++ +..+..+++++++....... .+.....+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 4589999999999999999999876 66677777777766543211 11111222222 346799999999864
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 280 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.+...+..++++++..... ..+|.|||.+
T Consensus 173 ------~~~~~~~~L~~li~~r~~~-----~s~IitSn~~ 201 (254)
T PRK06526 173 ------FEPEAANLFFQLVSSRYER-----ASLIVTSNKP 201 (254)
T ss_pred ------CCHHHHHHHHHHHHHHHhc-----CCEEEEcCCC
Confidence 2456667888888764321 1377788864
No 227
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.2e-08 Score=99.69 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=89.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc-------EEEEc-c--------chhhhhh--hh---chHHHHHHHHHHHH-
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT-------FLKLA-G--------PQLVQMF--IG---DGAKLVRDAFQLAK- 260 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~-------~i~v~-~--------~~l~~~~--~g---~~~~~~~~~~~~a~- 260 (423)
.+..+||+||+|+||+++|.++|+.+-+. +-.+. | +++..-. .+ -.-..++.+.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 45689999999999999999999987321 11000 0 0000000 00 11233444444443
Q ss_pred ---hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEE
Q 014525 261 ---EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE 337 (423)
Q Consensus 261 ---~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~ 337 (423)
.....|++||++|.+ +.+..+.|+..|++ +..++++|.+|+.++.+.|.+++ |.. .+.
T Consensus 103 ~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 103 HARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----PPENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred ccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 345679999999998 34556677776664 45688899999999999999999 884 689
Q ss_pred cCCCCHHHHHHHHHH
Q 014525 338 FPHPTEEARARILQI 352 (423)
Q Consensus 338 ~~~p~~~~r~~Il~~ 352 (423)
|++|+.++....+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 164 LAPPPEQYALTWLSR 178 (334)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999998888877754
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.2e-08 Score=96.85 Aligned_cols=131 Identities=23% Similarity=0.285 Sum_probs=88.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcE----EEEccchhhhh-------hh-------h------chHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATF----LKLAGPQLVQM-------FI-------G------DGAKLVRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~----i~v~~~~l~~~-------~~-------g------~~~~~~~~~~~~ 258 (423)
-|..+||+||+|+||+++|.++|+.+-+.- -...+..++.. ++ | -.-..++++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 355799999999999999999999773210 00011011100 00 1 112334555544
Q ss_pred HHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcce
Q 014525 259 AKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDR 334 (423)
Q Consensus 259 a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~ 334 (423)
+.. ....|++||++|.+ +....+.|+..|++ +..++++|.+|+.++.+.|.+++ |+ .
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~~~fiL~~~~~~~lLpTIrS--RC-q 165 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----PSPGRYLWLISAQPARLPATIRS--RC-Q 165 (319)
T ss_pred HhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----CCCCCeEEEEECChhhCchHHHh--hh-e
Confidence 433 23479999999998 34556677777664 44577788888989999999999 88 6
Q ss_pred EEEcCCCCHHHHHHHHHH
Q 014525 335 KIEFPHPTEEARARILQI 352 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~ 352 (423)
.+.|++|+.++....+..
T Consensus 166 ~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EeeCCCcCHHHHHHHHHH
Confidence 889999999888777754
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.97 E-value=4e-09 Score=102.50 Aligned_cols=121 Identities=19% Similarity=0.289 Sum_probs=77.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhc---hHHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD---GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~---~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
.+++|+||||||||+||.++|+++ +..+++++..+++..+... ........+.... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 689999999999999999999987 6788889988887754321 0011111233333 34699999997753
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-CC----CChhhhcCCCcc---eEEEcCCCC
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-DI----LDPALMRSGRLD---RKIEFPHPT 342 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~-~~----l~~~l~~~~Rf~---~~i~~~~p~ 342 (423)
.++..+..++.+++..-.. +-.+|.|||.+ .. +++.+.+ |+. ..+.|...+
T Consensus 260 -------~t~~~~~~Lf~iin~R~~~----~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d 318 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRLLR----QKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGED 318 (329)
T ss_pred -------CCHHHHHHHHHHHHHHHHC----CCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcC
Confidence 3445667788888764221 12367777743 22 4455655 542 245554444
No 230
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2.5e-08 Score=96.31 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=89.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc-----------------------EEEEccchhhhhhhhchHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT-----------------------FLKLAGPQLVQMFIGDGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~-----------------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a 259 (423)
.+..+||+||.|+||+.+|+++|+.+-+. |+.+.... .++.+ ....++.+...+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 45689999999999999999999987321 11111100 00001 123344444444
Q ss_pred Hh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceE
Q 014525 260 KE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRK 335 (423)
Q Consensus 260 ~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~ 335 (423)
.. ....|++||++|.+ +....+.|+..|++ +..++++|.+|+.++.+-|.+++ |+ ..
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~ 161 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PAPNCLFLLVTHNQKRLLPTIVS--RC-QQ 161 (319)
T ss_pred hhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChhhChHHHHh--cc-ee
Confidence 32 34679999999998 34556677777664 45678899999999999999999 88 68
Q ss_pred EEcCCCCHHHHHHHHHH
Q 014525 336 IEFPHPTEEARARILQI 352 (423)
Q Consensus 336 i~~~~p~~~~r~~Il~~ 352 (423)
+.|++|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999999888877754
No 231
>PRK09183 transposase/IS protein; Provisional
Probab=98.91 E-value=7.2e-09 Score=97.79 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=67.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhc-hHHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD-GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
.+.+++|+||||||||+||.+++..+ +..+..+++.++...+... ..+.+...+... ...+.+++|||++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~-- 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP-- 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC--
Confidence 34679999999999999999998764 6677788888776554221 111222334332 2456799999998753
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.+.+....++++++..... . .+|.|||.+
T Consensus 178 -------~~~~~~~~lf~li~~r~~~---~--s~iiTsn~~ 206 (259)
T PRK09183 178 -------FSQEEANLFFQVIAKRYEK---G--SMILTSNLP 206 (259)
T ss_pred -------CChHHHHHHHHHHHHHHhc---C--cEEEecCCC
Confidence 2334556788888764321 1 267788854
No 232
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.91 E-value=7.7e-09 Score=99.71 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=65.8
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchH-HHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGA-KLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~-~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
..++++|+||+|||||+||.++|+++ +.++..+..++++..+..... +.....+.... ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 35689999999999999999999998 678888888888766432211 11223333333 34699999997642
Q ss_pred CCCCCCCCcHHHH-HHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 279 RFDSEVSGDREVQ-RTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 279 r~~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
..+... ..+..+++.- ...+...|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R----~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYR----MQEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHH----HHCCCeEEEECCCC
Confidence 122333 3444555532 01234578898843
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.91 E-value=1.4e-08 Score=95.43 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchHH-HH-HHHHHHHHhCCCeEEEECCchhhhc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAK-LV-RDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~~-~~-~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
.+.+++|+||||||||+||-|+++++ |.+++.++.++++......... .. ..+.... ....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEP- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCcc-
Confidence 45789999999999999999999987 7889999999998875433221 11 1122222 344699999998753
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 278 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 278 ~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.+......+.+++...-.. ... |.|||.+
T Consensus 181 --------~~~~~~~~~~q~I~~r~~~----~~~-~~tsN~~ 209 (254)
T COG1484 181 --------FSQEEADLLFQLISRRYES----RSL-IITSNLS 209 (254)
T ss_pred --------CCHHHHHHHHHHHHHHHhh----ccc-eeecCCC
Confidence 2334455666666543221 112 8888854
No 234
>PF13173 AAA_14: AAA domain
Probab=98.90 E-value=1.3e-08 Score=85.48 Aligned_cols=120 Identities=23% Similarity=0.275 Sum_probs=72.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 282 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~ 282 (423)
+.++|+||+|||||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999999876 77888888765442211111 1122222222256899999999872
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhh--hcCCCcceEEEcCCCCHHH
Q 014525 283 EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPAL--MRSGRLDRKIEFPHPTEEA 345 (423)
Q Consensus 283 ~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l--~~~~Rf~~~i~~~~p~~~~ 345 (423)
+....+..+.+.. .++.||.|+.....+.... .-+||. ..+.+.|++..|
T Consensus 75 ------~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 3445555555532 2344555554333332211 113576 477888888765
No 235
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.90 E-value=4.3e-09 Score=107.08 Aligned_cols=173 Identities=25% Similarity=0.290 Sum_probs=108.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh--CCcEEEEccchhhhh-----hhhchHHHHHHHH-----HHHHhCCCeEEEECCc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT--NATFLKLAGPQLVQM-----FIGDGAKLVRDAF-----QLAKEKSPCIIFIDEI 272 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l--~~~~i~v~~~~l~~~-----~~g~~~~~~~~~~-----~~a~~~~~~vl~iDEi 272 (423)
-.+++.|.|||||-.+++++.+.. ..||+.+||..+-.. ++|+.++.....+ ........+.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 469999999999999999999876 579999999765443 2333222111111 1111223478999999
Q ss_pred hhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC-----CCCCCeEEEEEcCCCCCCChhhhcCCCcce---------EEEc
Q 014525 273 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-----SSDDRIKVIAATNRADILDPALMRSGRLDR---------KIEF 338 (423)
Q Consensus 273 d~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-----~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~---------~i~~ 338 (423)
..+ .-..|..|+++|.+..-. ...-+|.||++|+++ | ..+.+.|||-. .|.+
T Consensus 417 gd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l-~~lv~~g~fredLyyrL~~~~i~l 482 (606)
T COG3284 417 GDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--L-AQLVEQGRFREDLYYRLNAFVITL 482 (606)
T ss_pred hhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--H-HHHHHcCCchHHHHHHhcCeeecc
Confidence 987 347889999999875432 222378899999854 2 23334455532 5555
Q ss_pred CCCCH-HHHHHHHHHHhhcC-CCCCCC---CHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 339 PHPTE-EARARILQIHSRKM-NVHPDV---NFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 339 ~~p~~-~~r~~Il~~~~~~~-~~~~~~---~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
|++.. .++...+..++.+. ...-.. .+..|..+.+..|.+++.+++..++..+
T Consensus 483 P~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 483 PPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred CchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 55433 23333444333322 221122 2566667778888999999999888554
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.87 E-value=2.7e-09 Score=94.90 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=64.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhch-HHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
.+.+++|+||||||||+||.++++++ +.++..++.++++..+.... .......+..... +.+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee--
Confidence 45689999999999999999999876 78889999998887653221 1112233444433 4699999996532
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
.+......++++++...+ .+ ..|.|||.
T Consensus 122 -------~~~~~~~~l~~ii~~R~~----~~-~tIiTSN~ 149 (178)
T PF01695_consen 122 -------LSEWEAELLFEIIDERYE----RK-PTIITSNL 149 (178)
T ss_dssp ---------HHHHHCTHHHHHHHHH----T--EEEEEESS
T ss_pred -------ecccccccchhhhhHhhc----cc-CeEeeCCC
Confidence 234556677888876432 12 35668885
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.86 E-value=1.9e-08 Score=92.83 Aligned_cols=182 Identities=22% Similarity=0.365 Sum_probs=96.4
Q ss_pred cCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC---cEEEEcc-chhh----hhh
Q 014525 173 GGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA---TFLKLAG-PQLV----QMF 244 (423)
Q Consensus 173 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~---~~i~v~~-~~l~----~~~ 244 (423)
+|.+..++.|.+.+.. .+...++|+||.|+|||+|++.+.+.+.. ..+++.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5788888888776532 13467999999999999999999998832 1111211 1000 000
Q ss_pred -------------h-----------------hchHHHHHHHHHHHHhCC-CeEEEECCchhhh-ccCCCCCCCCcHHHHH
Q 014525 245 -------------I-----------------GDGAKLVRDAFQLAKEKS-PCIIFIDEIDAIG-TKRFDSEVSGDREVQR 292 (423)
Q Consensus 245 -------------~-----------------g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~-~~r~~~~~~~~~~~~~ 292 (423)
. ......+..++..+.... ..||+|||++.+. ... .......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHH
Confidence 0 011233444555554432 3899999999997 211 2345555
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEcCCCC------CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC---CCC
Q 014525 293 TMLELLNQLDGFSSDDRIKVIAATNRAD------ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH---PDV 363 (423)
Q Consensus 293 ~l~~ll~~~~~~~~~~~v~vI~ttn~~~------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~---~~~ 363 (423)
.+..+++. .....++.+|.++.... .-...+.. |+.. +.+++.+.++..+++...+... .. ++.
T Consensus 143 ~l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~ 215 (234)
T PF01637_consen 143 SLRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDE 215 (234)
T ss_dssp HHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHhh---ccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHH
Confidence 55555554 22334444444433211 11222333 7766 9999999999999999987765 32 344
Q ss_pred CHHHHHHhCCCCcHHHHH
Q 014525 364 NFEELARSTDDFNGAQLK 381 (423)
Q Consensus 364 ~l~~la~~~~g~s~~dl~ 381 (423)
++..+...+.| .|+-|.
T Consensus 216 ~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 216 DIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHhCC-CHHHHh
Confidence 56777777766 465554
No 238
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.85 E-value=1.7e-07 Score=86.40 Aligned_cols=179 Identities=15% Similarity=0.229 Sum_probs=117.8
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-C--CcEEEEccchh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-N--ATFLKLAGPQL 240 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-~--~~~i~v~~~~l 240 (423)
..+.+++.+.+.++....+...... ..-.++++|||+|+||-|.+-++.+++ | .+-+.+....+
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 3445677777888777777764420 011379999999999999999999887 2 11111111000
Q ss_pred ---------------------hhhhhhchHHH-HHHHHHHHH---------hCCCeEEEECCchhhhccCCCCCCCCcHH
Q 014525 241 ---------------------VQMFIGDGAKL-VRDAFQLAK---------EKSPCIIFIDEIDAIGTKRFDSEVSGDRE 289 (423)
Q Consensus 241 ---------------------~~~~~g~~~~~-~~~~~~~a~---------~~~~~vl~iDEid~l~~~r~~~~~~~~~~ 289 (423)
.....|...+. +..+..... .....|++|-|+|.|. .+
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~d 142 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----------RD 142 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----------HH
Confidence 00012333222 222222222 2345799999999984 46
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCC-CHHHH
Q 014525 290 VQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDV-NFEEL 368 (423)
Q Consensus 290 ~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~l~~l 368 (423)
.|..|..-++.. .+++.+|..+|..+.+-+++++ |. ..+.+|.|+.++...++...+.+-++.-+. -+..+
T Consensus 143 AQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 143 AQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred HHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 677777666542 2467899999999999999998 76 678999999999999999988877766332 25666
Q ss_pred HHhCCC
Q 014525 369 ARSTDD 374 (423)
Q Consensus 369 a~~~~g 374 (423)
++.+.|
T Consensus 215 a~kS~~ 220 (351)
T KOG2035|consen 215 AEKSNR 220 (351)
T ss_pred HHHhcc
Confidence 666554
No 239
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.85 E-value=6.4e-08 Score=99.41 Aligned_cols=206 Identities=15% Similarity=0.245 Sum_probs=118.7
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh-
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL- 240 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l- 240 (423)
+...+.+.++|+-...-+++++.++...+. +..+.+-+||+||||||||++++.+|++++..+.....+..
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~ 82 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSF 82 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCc
Confidence 344556778898899999999998865332 22334568899999999999999999999877665432211
Q ss_pred h------hhhhhch---H---HHHHHHHHH-----HH-----------hCCCeEEEECCchhhhccCCCCCCCCcHHHHH
Q 014525 241 V------QMFIGDG---A---KLVRDAFQL-----AK-----------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQR 292 (423)
Q Consensus 241 ~------~~~~g~~---~---~~~~~~~~~-----a~-----------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 292 (423)
. ..+.+.. . ... ..|.. .+ ...+.||+|+|+=.++... ...+..
T Consensus 83 ~~~~~~~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~~ 154 (519)
T PF03215_consen 83 RESDNQEDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFRE 154 (519)
T ss_pred cccccccccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHHH
Confidence 0 0111110 0 001 11211 11 1245799999997664321 134555
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEc-------CCC--------CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC
Q 014525 293 TMLELLNQLDGFSSDDRIKVIAAT-------NRA--------DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM 357 (423)
Q Consensus 293 ~l~~ll~~~~~~~~~~~v~vI~tt-------n~~--------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~ 357 (423)
.|.+++.... ...+++|.|- |.. .-+++.++...++ .+|.|.+-...-....|...+...
T Consensus 155 ~L~~~l~~~~----~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 155 ALRQYLRSSR----CLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHHcCC----CCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 5555554311 1166666661 111 1356777663344 588898888766665555444322
Q ss_pred -----CC--CC-CCC-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 014525 358 -----NV--HP-DVN-FEELARSTDDFNGAQLKAVCVEAGMLAL 392 (423)
Q Consensus 358 -----~~--~~-~~~-l~~la~~~~g~s~~dl~~l~~~A~~~A~ 392 (423)
+. .+ ... ++.|+..+ .+||+.++....+.+.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 11 11 111 45555543 4589998887777776
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=2.5e-08 Score=96.98 Aligned_cols=131 Identities=22% Similarity=0.308 Sum_probs=89.5
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCC--------c-----------------EEEEccchhhhhhhh-----chHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNA--------T-----------------FLKLAGPQLVQMFIG-----DGAKL 251 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~--------~-----------------~i~v~~~~l~~~~~g-----~~~~~ 251 (423)
+-+..+||+||+|+|||++|+.+|+.+.+ + |+.+....-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 34568999999999999999999998732 1 2222211000 0001 12344
Q ss_pred HHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhh
Q 014525 252 VRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALM 327 (423)
Q Consensus 252 ~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~ 327 (423)
++.+.+.+.. ....|+++|+++.+ +...++.++.++++.. .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHH
Confidence 5666555543 33579999999997 5567778887777631 34567778888889999998
Q ss_pred cCCCcceEEEcCCCCHHHHHHHHHH
Q 014525 328 RSGRLDRKIEFPHPTEEARARILQI 352 (423)
Q Consensus 328 ~~~Rf~~~i~~~~p~~~~r~~Il~~ 352 (423)
+ |+ ..+.|++|+.++..+.+..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 76 6888999999888777654
No 241
>PRK06921 hypothetical protein; Provisional
Probab=98.81 E-value=3.1e-08 Score=93.77 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=62.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchh-hhcc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA-IGTK 278 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~-l~~~ 278 (423)
..+++|+||||||||+|+.++|+++ +..+++++..+++....... ......+... ....+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 4679999999999999999999986 46677888777655432211 1111222222 3357999999954 2111
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
. .........++.+++..... +-.+|.|||.
T Consensus 194 e-----~~t~~~~~~lf~iin~R~~~----~k~tIitsn~ 224 (266)
T PRK06921 194 P-----RATEWQIEQMYSVLNYRYLN----HKPILISSEL 224 (266)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHC----CCCEEEECCC
Confidence 0 01233445677888764221 1125667774
No 242
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.81 E-value=8.4e-08 Score=89.39 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=84.6
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-----CcEEEE-----cc--
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKL-----AG-- 237 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-----~~~i~v-----~~-- 237 (423)
..+.||.-+++.|...++..+.++.. +.|-.+-|+|+|||||.+.++.||+.+- .+++.. ++
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 35789999999999999877766421 2333466899999999999999999862 222211 11
Q ss_pred chhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHh---hcCCCCCCCeEEEE
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ---LDGFSSDDRIKVIA 314 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~---~~~~~~~~~v~vI~ 314 (423)
...++.| .+.....+...+..++.++.++||+|+| ++.+...+.-+|+. ..+... .+.++|.
T Consensus 156 ~~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~f-rkaIFIf 220 (344)
T KOG2170|consen 156 ASKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDF-RKAIFIF 220 (344)
T ss_pred hHHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccc-cceEEEE
Confidence 1122222 2233345566677788899999999998 45666777777763 223333 3566677
Q ss_pred EcCCC
Q 014525 315 ATNRA 319 (423)
Q Consensus 315 ttn~~ 319 (423)
-+|..
T Consensus 221 LSN~g 225 (344)
T KOG2170|consen 221 LSNAG 225 (344)
T ss_pred EcCCc
Confidence 77654
No 243
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.80 E-value=2.9e-08 Score=93.16 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=107.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
..++....+++++++....+.+.... ..-.+.|+|||||||||....+.|..+-.+.-.-++ +..
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m--~le 98 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSM--LLE 98 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhH--HHH
Confidence 34556788999999999998886421 112289999999999999999999988654111110 111
Q ss_pred h----hhh-chHHHHHHHHHHHHh-------CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCe
Q 014525 243 M----FIG-DGAKLVRDAFQLAKE-------KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI 310 (423)
Q Consensus 243 ~----~~g-~~~~~~~~~~~~a~~-------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v 310 (423)
. -.| ...+.--..|...+. ..+..+++||.|.+. .+.|+.|.+.+.. ...++
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----------~~AQnALRRviek-----~t~n~ 162 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----------RDAQNALRRVIEK-----YTANT 162 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh-----------HHHHHHHHHHHHH-----hccce
Confidence 1 011 111222234555542 256799999999974 4667777775543 23466
Q ss_pred EEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC
Q 014525 311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM 357 (423)
Q Consensus 311 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~ 357 (423)
.++.-+|.+..+.|++.+ || ..+.|.+.+.......+.+....-
T Consensus 163 rF~ii~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 163 RFATISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred EEEEeccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhcc
Confidence 777888999999999998 77 456677778777777777766543
No 244
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.79 E-value=9.1e-09 Score=100.63 Aligned_cols=221 Identities=22% Similarity=0.230 Sum_probs=118.6
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch-----h----
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ-----L---- 240 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~-----l---- 240 (423)
..|.|.+..+..+.=.+......... .....+..-++||.|.||||||.|.+.+++-....+ ++++.. +
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred CcCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 45778887776654433222111000 000011223799999999999999998876554433 222211 1
Q ss_pred -----hhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC-C-------CC
Q 014525 241 -----VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-S-------SD 307 (423)
Q Consensus 241 -----~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-~-------~~ 307 (423)
.+.|.-+. + . .+ ....+|++|||+|++- .+....|.+.+++..-. . -.
T Consensus 102 ~~d~~~~~~~lea-G----a--lv-lad~GiccIDe~dk~~-----------~~~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 102 SRDPVTGEWVLEA-G----A--LV-LADGGICCIDEFDKMK-----------EDDRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp CCCGGTSSECEEE------H--HH-HCTTSEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred ccccccceeEEeC-C----c--hh-cccCceeeeccccccc-----------chHHHHHHHHHHcCeeccchhhhccccc
Confidence 11111111 1 1 11 2244899999999973 23456777777652211 1 12
Q ss_pred CCeEEEEEcCCCC-------------CCChhhhcCCCcceEEEc-CCCCHHHHHHHHHHHhhcCCCC---------C---
Q 014525 308 DRIKVIAATNRAD-------------ILDPALMRSGRLDRKIEF-PHPTEEARARILQIHSRKMNVH---------P--- 361 (423)
Q Consensus 308 ~~v~vI~ttn~~~-------------~l~~~l~~~~Rf~~~i~~-~~p~~~~r~~Il~~~~~~~~~~---------~--- 361 (423)
.++-|++++|+.. .+++.+++ |||.++.+ ..|+.+.-..+.++.+...... .
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 3677899999754 37788998 99998765 4777655555555444332111 0
Q ss_pred CCC-----------------------HHHHHHh-------------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 362 DVN-----------------------FEELARS-------------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 362 ~~~-----------------------l~~la~~-------------~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
..+ ...|... ....+.+.++.+++-|...|..+-+..|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 111 1111110 1134567889999999999999999999999999
Q ss_pred HHHHHHHH
Q 014525 406 EGIIQVQA 413 (423)
Q Consensus 406 ~al~~~~~ 413 (423)
.|+.-+..
T Consensus 321 ~Ai~L~~~ 328 (331)
T PF00493_consen 321 EAIRLFEE 328 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987764
No 245
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.73 E-value=8.1e-08 Score=97.25 Aligned_cols=231 Identities=19% Similarity=0.188 Sum_probs=131.3
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch----hhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ----LVQM 243 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~----l~~~ 243 (423)
.|..|.|.+.++.-|.-.+.-....... ....++..-+|++.|.||||||-+.++.+..+...++...... +...
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 4556667776666665544322211100 1111222236999999999999999999998866554332111 1000
Q ss_pred hhhchHHHHHHHHH--HHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC-C-------CCCCCeEEE
Q 014525 244 FIGDGAKLVRDAFQ--LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-F-------SSDDRIKVI 313 (423)
Q Consensus 244 ~~g~~~~~~~~~~~--~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~-~-------~~~~~v~vI 313 (423)
.+.+.+..- -.++ ..--...+|.+|||||++.- .-|..+.+.+++-.- + .-..+.-||
T Consensus 422 VvkD~esgd-f~iEAGALmLADnGICCIDEFDKMd~-----------~dqvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 422 VVKDEESGD-FTIEAGALMLADNGICCIDEFDKMDV-----------KDQVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EEecCCCCc-eeeecCcEEEccCceEEechhcccCh-----------HhHHHHHHHHHhheehheecceEEeecchhhhh
Confidence 000000000 0000 00012347999999999832 224455555543110 0 112245678
Q ss_pred EEcCCCC-------------CCChhhhcCCCcceEE-EcCCCCHHHHHHHHHHHhhcCC-C-------------------
Q 014525 314 AATNRAD-------------ILDPALMRSGRLDRKI-EFPHPTEEARARILQIHSRKMN-V------------------- 359 (423)
Q Consensus 314 ~ttn~~~-------------~l~~~l~~~~Rf~~~i-~~~~p~~~~r~~Il~~~~~~~~-~------------------- 359 (423)
|++|+.. .+++++++ |||..+ -+.-|++..-..|.++.+.... +
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi 567 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYI 567 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHH
Confidence 8888642 37899999 999754 5567777555554444332110 0
Q ss_pred ------CCCCC---HHHHH---------------HhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 360 ------HPDVN---FEELA---------------RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 360 ------~~~~~---l~~la---------------~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
.+... -+.|. +.+++.+.++|+.+++.+...|..+.+..||.+|+.+|+.-+..
T Consensus 568 ~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 568 RYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 00000 01111 11346778999999999999999999999999999999988765
No 246
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.72 E-value=9.3e-07 Score=80.97 Aligned_cols=184 Identities=21% Similarity=0.269 Sum_probs=114.0
Q ss_pred CceEEcCCCCChhHHHHHHHHHhC---CcEEEEccchh-----hhhhhhch------------HHHHHHHHHHHHh-CCC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQL-----VQMFIGDG------------AKLVRDAFQLAKE-KSP 264 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~~l-----~~~~~g~~------------~~~~~~~~~~a~~-~~~ 264 (423)
-+.++|+.|+|||+++|++...++ ...+.++...+ ...++.+. +..-+.+.+...+ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 578999999999999998877763 22334443322 22222111 1111223333333 445
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcC------CCcceEEEc
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRS------GRLDRKIEF 338 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~------~Rf~~~i~~ 338 (423)
.++++||.+.+.. .....+.-|.+.-......-.++.|+-. .|.+.++.+ -|++..|.+
T Consensus 133 v~l~vdEah~L~~-----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLND-----------SALEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhCh-----------hHHHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEEec
Confidence 8999999999852 2223333333322222222234344422 233322211 278777999
Q ss_pred CCCCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 339 PHPTEEARARILQIHSRKMNVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 339 ~~p~~~~r~~Il~~~~~~~~~~----~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
+|.+.++-..++++++..-+.. ++..+..+...+.| .|+-+.++|..|...|...+...|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999999999999998765443 33346777778887 688999999999999999999998876654
No 247
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.72 E-value=2e-07 Score=97.47 Aligned_cols=192 Identities=28% Similarity=0.288 Sum_probs=116.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE-ccchhhhhhhhchHHHHHHHH--H------HHHhCCCeEEEECCchhhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL-AGPQLVQMFIGDGAKLVRDAF--Q------LAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v-~~~~l~~~~~g~~~~~~~~~~--~------~a~~~~~~vl~iDEid~l~ 276 (423)
++||.|.||||||.|.+.+++-+...++.- .++.-.+ .+...++.-. + ..--..++|++|||+|++.
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~G----LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAG----LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccC----ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 599999999999999999999875544322 2221111 1000000000 0 0012346899999999973
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCC--------CCCCCeEEEEEcCCCC-------------CCChhhhcCCCcceE
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGF--------SSDDRIKVIAATNRAD-------------ILDPALMRSGRLDRK 335 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~--------~~~~~v~vI~ttn~~~-------------~l~~~l~~~~Rf~~~ 335 (423)
......+.+.+.+-.-. .-+.++-|+|++|+.. .|++.|++ |||.+
T Consensus 397 -----------~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLi 463 (682)
T COG1241 397 -----------EEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLI 463 (682)
T ss_pred -----------hHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCee
Confidence 34455666666542111 1123556788888753 37889999 99997
Q ss_pred EEcC-CCCHHHHHH----HHHHHhhcC------------------------------CCCCCC---CHHHHHH-----h-
Q 014525 336 IEFP-HPTEEARAR----ILQIHSRKM------------------------------NVHPDV---NFEELAR-----S- 371 (423)
Q Consensus 336 i~~~-~p~~~~r~~----Il~~~~~~~------------------------------~~~~~~---~l~~la~-----~- 371 (423)
+.+. .|+.+.-.. ++..|.... .+.+.. ..+.|.. +
T Consensus 464 fvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk 543 (682)
T COG1241 464 FVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRK 543 (682)
T ss_pred EEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhh
Confidence 7665 666543333 333331100 010111 1111111 1
Q ss_pred ---------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 372 ---------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 372 ---------~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
+...+.++|+++++.|.+.|..+.+..|+.+|+.+|++-+...
T Consensus 544 ~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~ 595 (682)
T COG1241 544 KSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFS 595 (682)
T ss_pred ccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Confidence 1236789999999999999999999999999999999998753
No 248
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.71 E-value=4.9e-07 Score=92.39 Aligned_cols=195 Identities=23% Similarity=0.319 Sum_probs=112.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc-cchhhhh--hhh---chHHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA-GPQLVQM--FIG---DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~-~~~l~~~--~~g---~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
++||+|.||||||.+.+.+++-+..-.++-- ++.-++. |+. ++...+-+ ....--...+|.+|||||++.
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLe-sGALVLSD~GiCCIDEFDKM~--- 539 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLE-SGALVLSDNGICCIDEFDKMS--- 539 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeee-cCcEEEcCCceEEchhhhhhh---
Confidence 6999999999999999999998754433211 1111110 000 00000000 000011335799999999983
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhc------C--CCCCCCeEEEEEcCCCC-------------CCChhhhcCCCcceEE-E
Q 014525 280 FDSEVSGDREVQRTMLELLNQLD------G--FSSDDRIKVIAATNRAD-------------ILDPALMRSGRLDRKI-E 337 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~v~vI~ttn~~~-------------~l~~~l~~~~Rf~~~i-~ 337 (423)
...+..|.+.+++-. + ..-..+.-|+|++|+.. .|+|.|++ |||.++ .
T Consensus 540 --------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyll 609 (804)
T KOG0478|consen 540 --------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLL 609 (804)
T ss_pred --------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEE
Confidence 233456777765411 1 11233677899999532 37899999 999866 4
Q ss_pred cCCCCHHHHHHHHHH----HhhcCC----------------------CCCCC---CHHHHHH-----h----CCC---Cc
Q 014525 338 FPHPTEEARARILQI----HSRKMN----------------------VHPDV---NFEELAR-----S----TDD---FN 376 (423)
Q Consensus 338 ~~~p~~~~r~~Il~~----~~~~~~----------------------~~~~~---~l~~la~-----~----~~g---~s 376 (423)
+..||+..-+.|..+ +...-. +.+.. +...+.. + ..| -+
T Consensus 610 lD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat 689 (804)
T KOG0478|consen 610 LDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITAT 689 (804)
T ss_pred ecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchh
Confidence 567776522333322 221100 00000 0111110 0 112 34
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 377 GAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 377 ~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
+++++.+.+.+...|..+....+...|+++|+.-....
T Consensus 690 ~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~a 727 (804)
T KOG0478|consen 690 PRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREA 727 (804)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 68999999999999999999999999999999876653
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.69 E-value=5e-08 Score=92.61 Aligned_cols=139 Identities=17% Similarity=0.353 Sum_probs=80.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCC-c--EEEEccchhhhhhhhchHHHHHHHHHHH----H-------hCCCeEEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNA-T--FLKLAGPQLVQMFIGDGAKLVRDAFQLA----K-------EKSPCIIFI 269 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~-~--~i~v~~~~l~~~~~g~~~~~~~~~~~~a----~-------~~~~~vl~i 269 (423)
.+++||+||+|||||.+++.+-..+.. . ...++++... ....+..+.+.. + .+...|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 467999999999999999988776642 2 2334444321 111221111110 0 122369999
Q ss_pred CCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-------CCeEEEEEcCCCC---CCChhhhcCCCcceEEEcC
Q 014525 270 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-------DRIKVIAATNRAD---ILDPALMRSGRLDRKIEFP 339 (423)
Q Consensus 270 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~v~vI~ttn~~~---~l~~~l~~~~Rf~~~i~~~ 339 (423)
||+..-.++..+ .......|.|+++...-++.. .++.+|+|++++. .+++.|+| .| .++.++
T Consensus 107 DDlN~p~~d~yg-----tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 107 DDLNMPQPDKYG-----TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp ETTT-S---TTS-------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred cccCCCCCCCCC-----CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 999876544322 122345666777653222221 2678889988643 47888887 66 689999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 014525 340 HPTEEARARILQIHSRK 356 (423)
Q Consensus 340 ~p~~~~r~~Il~~~~~~ 356 (423)
.|+.+....|+...+..
T Consensus 179 ~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQS 195 (272)
T ss_dssp --TCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999888766653
No 250
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=9.7e-08 Score=80.17 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=48.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh--------CCcEEEEccchhhh------h----h----hh--chHHHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT--------NATFLKLAGPQLVQ------M----F----IG--DGAKLVRDAFQLA 259 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l--------~~~~i~v~~~~l~~------~----~----~g--~~~~~~~~~~~~a 259 (423)
.+.++++||||+|||++++.++..+ ..+++.++++.... . + .+ ........+...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999987 67788887764431 1 0 01 1233334555556
Q ss_pred HhCCCeEEEECCchhhh
Q 014525 260 KEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l~ 276 (423)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 66665699999999973
No 251
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.66 E-value=2.1e-07 Score=85.98 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=90.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 284 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~ 284 (423)
.+-.++||+|||||++++.+|+.+|.+++.++|++.++. ..+.+++.-+... .+-++|||++.+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl--------- 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL--------- 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS---------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh---------
Confidence 466789999999999999999999999999999986543 3344555444443 368999999998
Q ss_pred CCcHHHHHHHHHHHHhh----cCC-----------CCCCCeEEEEEcCCC----CCCChhhhcCCCcceEEEcCCCCHHH
Q 014525 285 SGDREVQRTMLELLNQL----DGF-----------SSDDRIKVIAATNRA----DILDPALMRSGRLDRKIEFPHPTEEA 345 (423)
Q Consensus 285 ~~~~~~~~~l~~ll~~~----~~~-----------~~~~~v~vI~ttn~~----~~l~~~l~~~~Rf~~~i~~~~p~~~~ 345 (423)
+.++...+.+.+..+ ..- .-..++-++.|.|+. ..+++.++. -| +.+.+..||...
T Consensus 97 --~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~ 171 (231)
T PF12774_consen 97 --SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSL 171 (231)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHH
T ss_pred --hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHH
Confidence 445555555544332 111 011245566777743 458888875 44 788888998665
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHh----------------CCCCcHHHHHHHHHHHHH
Q 014525 346 RARILQIHSRKMNVHPDVNFEELARS----------------TDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 346 r~~Il~~~~~~~~~~~~~~l~~la~~----------------~~g~s~~dl~~l~~~A~~ 389 (423)
..+ ..+-..++. +...||.. ...|.-+.++.++..|..
T Consensus 172 I~e---i~L~s~GF~---~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~ 225 (231)
T PF12774_consen 172 IAE---ILLLSQGFK---DAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGS 225 (231)
T ss_dssp HHH---HHHHCCCTS---SHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHH
T ss_pred HHH---HHHHHcCch---hHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHH
Confidence 554 445444443 22222221 123566788888877763
No 252
>PF05729 NACHT: NACHT domain
Probab=98.61 E-value=7.4e-07 Score=77.64 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=76.6
Q ss_pred CceEEcCCCCChhHHHHHHHHHhC--------Cc-EEEEccchhhhh------------hhhchHHHHHH-HHHHHHhCC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTN--------AT-FLKLAGPQLVQM------------FIGDGAKLVRD-AFQLAKEKS 263 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~--------~~-~i~v~~~~l~~~------------~~g~~~~~~~~-~~~~a~~~~ 263 (423)
-++|+|+||+|||++++.++..+. .+ ++.+.+...... ........... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998761 11 223333322111 01111111111 223334556
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCH
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTE 343 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~ 343 (423)
..+|+||.+|.+...... .........+.+++.. ....++.+|.|+.+ ..... +.+...-...+.+++.+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 688999999998643211 0011222334444443 12234455555542 22211 222111125789999999
Q ss_pred HHHHHHHHHHhhc
Q 014525 344 EARARILQIHSRK 356 (423)
Q Consensus 344 ~~r~~Il~~~~~~ 356 (423)
+++.++++.++..
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988763
No 253
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.59 E-value=1.8e-07 Score=92.21 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=62.2
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCC-cEEEEccchhhhhh-------hhchHHHHHHHHHHHHhCCCeEEEECCc
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNA-TFLKLAGPQLVQMF-------IGDGAKLVRDAFQLAKEKSPCIIFIDEI 272 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-~~i~v~~~~l~~~~-------~g~~~~~~~~~~~~a~~~~~~vl~iDEi 272 (423)
..+|+|++||||+|+|||+|+-.+.+.+.. .-.+++-.+|+... .|.. ..+..+..... ....||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~-~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELA-KESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHH-hcCCEEEEeee
Confidence 357899999999999999999999998854 33333333443321 1111 11222322222 23359999999
Q ss_pred hhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 273 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 273 d~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
+.- +..--.++..++..+- ..++++|+|||.+
T Consensus 137 ~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 872 2222334555665432 2468899999964
No 254
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-06 Score=81.77 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=115.4
Q ss_pred ccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHH------HhCCcEEEEccchhhhhhh
Q 014525 172 IGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAA------QTNATFLKLAGPQLVQMFI 245 (423)
Q Consensus 172 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~------~l~~~~i~v~~~~l~~~~~ 245 (423)
|.........++++|.. ..+.....+||.||+|.|||+||+.+.. ++..+|+.+||..+.+...
T Consensus 186 iatrnp~fnrmieqier----------va~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~a 255 (531)
T COG4650 186 IATRNPHFNRMIEQIER----------VAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTA 255 (531)
T ss_pred ccccChHHHHHHHHHHH----------HHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchH
Confidence 33444555555555432 2233445799999999999999999875 4578999999987643310
Q ss_pred -hchHHHHHHHHH--------HHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC------CCCe
Q 014525 246 -GDGAKLVRDAFQ--------LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------DDRI 310 (423)
Q Consensus 246 -g~~~~~~~~~~~--------~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~v 310 (423)
..--+.++..|. ..+....+.+|+|||..++. +-|..++..+.+-.-+.- .+++
T Consensus 256 msalfghvkgaftga~~~r~gllrsadggmlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdf 324 (531)
T COG4650 256 MSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDF 324 (531)
T ss_pred HHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccch
Confidence 000111222222 22334568999999999852 235566666665332211 1245
Q ss_pred EEEEEcCC-------CCCCChhhhcCCCcceEEEcCCCCHHHHHHHH--------HHHhhcCC----CCCCCCHHHHHH-
Q 014525 311 KVIAATNR-------ADILDPALMRSGRLDRKIEFPHPTEEARARIL--------QIHSRKMN----VHPDVNFEELAR- 370 (423)
Q Consensus 311 ~vI~ttn~-------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il--------~~~~~~~~----~~~~~~l~~la~- 370 (423)
-+|+.|-+ ...+...+.- |+ ....|..|...+|.+=+ ..+....+ +..+.--..|+-
T Consensus 325 qliagtvrdlrq~vaeg~fredl~a--ri-nlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa 401 (531)
T COG4650 325 QLIAGTVRDLRQLVAEGKFREDLYA--RI-NLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFA 401 (531)
T ss_pred HHhhhhHHHHHHHHhccchHHHHHH--hh-heeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhc
Confidence 55655542 1223334433 44 24556666665555422 22222111 111111112221
Q ss_pred ----hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 371 ----STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 371 ----~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
..+..+-+++.+-+...+..| ....||.+-+++-+..+..
T Consensus 402 ~spqa~w~gnfrelsasvtrmatla---d~grit~~~ve~ei~rlr~ 445 (531)
T COG4650 402 TSPQATWRGNFRELSASVTRMATLA---DSGRITLDVVEDEINRLRY 445 (531)
T ss_pred cCcchhhcccHHHHhHHHHHHHHHh---cCCceeHHHHHHHHHHHHH
Confidence 122334567777666666555 5667888877777766654
No 255
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=4e-06 Score=78.08 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=78.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccc------hhhhh------hh-----hchHHHHHHHHHHHH----
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP------QLVQM------FI-----GDGAKLVRDAFQLAK---- 260 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~------~l~~~------~~-----g~~~~~~~~~~~~a~---- 260 (423)
.+|..+||+||+|+||..+|.++|..+-+.--.-.|. .+... ++ .-....++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3677899999999999999999999773210000111 01000 00 011223334433322
Q ss_pred -hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcC
Q 014525 261 -EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFP 339 (423)
Q Consensus 261 -~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~ 339 (423)
...+.|++|+++|.+ +.+..+.|+.+|++ +..++++|.+|+.++.+.|.+++ |. ..+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 234689999999998 34556677766654 55688899999999999999999 87 456777
Q ss_pred CC
Q 014525 340 HP 341 (423)
Q Consensus 340 ~p 341 (423)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 76
No 256
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=7e-07 Score=84.80 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=80.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEcc--------chhhhhh-hh----chHHHHHHHHHHHHh----CCCe
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG--------PQLVQMF-IG----DGAKLVRDAFQLAKE----KSPC 265 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~--------~~l~~~~-~g----~~~~~~~~~~~~a~~----~~~~ 265 (423)
-+..+||+||+|+||+.+|.++|..+-+.-..-.| +++..-. .| -.-..++.+...+.. ..+.
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 35679999999999999999999987432100011 0110000 01 012234444444432 3457
Q ss_pred EEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCC
Q 014525 266 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 342 (423)
Q Consensus 266 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~ 342 (423)
|++||++|.+ +.+.++.|+.+|++ +..++++|..|+.++.+.|.+++ |+ ..+.|+++.
T Consensus 98 v~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~~ 155 (290)
T PRK05917 98 IYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPMEE 155 (290)
T ss_pred EEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccchh
Confidence 9999999998 45667788777765 45678888888889999999998 87 567777653
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.50 E-value=9.2e-07 Score=76.65 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=62.7
Q ss_pred ceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh----------------------hhc--hHHHHHHHHHHH
Q 014525 207 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF----------------------IGD--GAKLVRDAFQLA 259 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~----------------------~g~--~~~~~~~~~~~a 259 (423)
++|+||||+|||+++..++... +.+++.++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 4667776654332210 000 111112234455
Q ss_pred HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 260 KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
....|.+++|||+..+..................+..++..... .++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecC
Confidence 66778999999999886432110001122334455555554332 355566666544
No 258
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.49 E-value=5e-07 Score=86.40 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=61.1
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCCcE-EEEccchhhhh-------hhhchHHHHHHHHHHHHhCCCeEEEECCc
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNATF-LKLAGPQLVQM-------FIGDGAKLVRDAFQLAKEKSPCIIFIDEI 272 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~-i~v~~~~l~~~-------~~g~~~~~~~~~~~~a~~~~~~vl~iDEi 272 (423)
..+++|++||||-|.|||+|.-...+.+..+- .+++-..++.. ..|...-.-...-+.+ ....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~--~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELA--AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHH--hcCCEEEeeee
Confidence 34778999999999999999999999885432 33333333322 2233311111111222 23469999999
Q ss_pred hhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 273 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 273 d~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
+. .+..--.++..|++.+-. .+|.+++|||.
T Consensus 140 ~V-----------tDI~DAMiL~rL~~~Lf~----~GV~lvaTSN~ 170 (367)
T COG1485 140 EV-----------TDIADAMILGRLLEALFA----RGVVLVATSNT 170 (367)
T ss_pred ee-----------cChHHHHHHHHHHHHHHH----CCcEEEEeCCC
Confidence 76 233333455566655422 37889999996
No 259
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.49 E-value=6.4e-06 Score=82.70 Aligned_cols=211 Identities=14% Similarity=0.204 Sum_probs=110.4
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccc--
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP-- 238 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~-- 238 (423)
+++..+...+++.-...-+.++..++.. +. .+ ..+ -+.+-+||+||+|||||+.++.++.+++..++.-..+
T Consensus 73 ~eKy~P~t~eeLAVHkkKI~eVk~WL~~-~~---~~-~~~-l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~ 146 (634)
T KOG1970|consen 73 VEKYKPRTLEELAVHKKKISEVKQWLKQ-VA---EF-TPK-LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN 146 (634)
T ss_pred HHhcCcccHHHHhhhHHhHHHHHHHHHH-HH---Hh-ccC-CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc
Confidence 3444556677777777778888887751 11 00 001 1234689999999999999999999998777665411
Q ss_pred -----------hhhhh-hhhchHHHHHHHHHHH------------HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 239 -----------QLVQM-FIGDGAKLVRDAFQLA------------KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 239 -----------~l~~~-~~g~~~~~~~~~~~~a------------~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
.+... |...... .......+ ....+.+|++||+=..+.. .+.+.++.+
T Consensus 147 ~~~~~~~h~~t~~~~~~~~s~L~~-fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~-------d~~~~f~ev 218 (634)
T KOG1970|consen 147 LKEPENLHNETSFLMFPYQSQLAV-FESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR-------DDSETFREV 218 (634)
T ss_pred ccccccccccchhcccchhhHHHH-HHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh-------hhHHHHHHH
Confidence 11111 1111000 00111111 1234569999999766532 122223333
Q ss_pred HHHHHhhcCCCCCCCeEEEEE-cCCCCCCChhhh------cCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC----C
Q 014525 295 LELLNQLDGFSSDDRIKVIAA-TNRADILDPALM------RSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD----V 363 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~t-tn~~~~l~~~l~------~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~----~ 363 (423)
++++... .. -.+++|.| ++.++..++.-+ -..|+ ..|.|.|-...-.+..+...+........ -
T Consensus 219 L~~y~s~---g~-~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~ 293 (634)
T KOG1970|consen 219 LRLYVSI---GR-CPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVP 293 (634)
T ss_pred HHHHHhc---CC-CcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCc
Confidence 3333221 11 23333333 222233222221 11255 47788877777777777666654332211 1
Q ss_pred CHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 364 NFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 364 ~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
+...+-.++.| +++||+.++....+.+
T Consensus 294 ~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 294 DTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred hhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 23344444544 5678999888777765
No 260
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.43 E-value=2.7e-06 Score=80.68 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=103.8
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHH---HhCCcEEEEccchhhhh--
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAA---QTNATFLKLAGPQLVQM-- 243 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~---~l~~~~i~v~~~~l~~~-- 243 (423)
.-.+.|..+.-+.+.+.++..+.. ...+++++.||.|+|||++...... +.+-.|+.+.....+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk 93 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDK 93 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhH
Confidence 445678888888888877654443 2457899999999999988765433 55667766654322211
Q ss_pred -------------------hhhchHHHHHHHHHHHHh-----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 244 -------------------FIGDGAKLVRDAFQLAKE-----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 244 -------------------~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
..|.....+..+...... ..+.|.++||||.+++ ..-|..++.+++
T Consensus 94 ~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfD 163 (408)
T KOG2228|consen 94 IALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHH
Confidence 122222222333333322 2234566889999863 345778888888
Q ss_pred hhcCCCCCCCeEEEEEcCCCCC---CChhhhcCCCcceE-EEcC-CCCHHHHHHHHHHHh
Q 014525 300 QLDGFSSDDRIKVIAATNRADI---LDPALMRSGRLDRK-IEFP-HPTEEARARILQIHS 354 (423)
Q Consensus 300 ~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~~~Rf~~~-i~~~-~p~~~~r~~Il~~~~ 354 (423)
.-+ ..+.++.||+.|.+-+. |...+.+ ||... |+++ +....+...+++..+
T Consensus 164 isq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 644 23567888888877654 5677777 99875 5554 445678888888766
No 261
>PF14516 AAA_35: AAA-like domain
Probab=98.40 E-value=3.4e-05 Score=75.60 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=96.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-------h-----------hhc-------------h
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-------F-----------IGD-------------G 248 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~-------~-----------~g~-------------~ 248 (423)
++..+.+.||..+|||++...+.+.+ +...+.+++..+-.. + .+- .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 46679999999999999999988766 567777776543211 0 000 0
Q ss_pred HHHHHHHHHHH---HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC----CCCCeEEEEEcCCCCC
Q 014525 249 AKLVRDAFQLA---KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS----SDDRIKVIAATNRADI 321 (423)
Q Consensus 249 ~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~----~~~~v~vI~ttn~~~~ 321 (423)
.......|+.. ....|-||+|||||.+... +.+..-++.+|....... .-.++.+|++...+..
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 11112223221 1246889999999999742 222223333333221111 1123333333322222
Q ss_pred CChhh-hcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHH
Q 014525 322 LDPAL-MRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAG 388 (423)
Q Consensus 322 l~~~l-~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~ 388 (423)
+.... .+|-.+...+.++..+.++...+++.+-.. .... .++.|...+.|. |.=+..+|....
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgGh-P~Lv~~~~~~l~ 244 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGGH-PYLVQKACYLLV 244 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 21111 233345567888999999999988776433 2222 278888888875 544555555443
No 262
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.3e-05 Score=76.39 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-------EEEE-ccchhhhh---
Q 014525 175 LEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT-------FLKL-AGPQLVQM--- 243 (423)
Q Consensus 175 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~-------~i~v-~~~~l~~~--- 243 (423)
+..+++.+...+... +.+..+||+|| +||+.+|+.+|..+-+. +-.+ +|..+...
T Consensus 7 q~~~~~~L~~~~~~~------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQD------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHcC------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455566666555321 34567999996 68999999999977321 1011 01110000
Q ss_pred ---hh---hc--hHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 244 ---FI---GD--GAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 244 ---~~---g~--~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
++ |. .-..++.+...+.. ....|++||++|.+. ....+.|+..|++ +..+++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLEE-----Pp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH-----------VNAANSLLKVIEE-----PQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC-----------HHHHHHHHHHhcC-----CCCCeE
Confidence 01 11 12344555444433 345799999999983 4556666666654 445688
Q ss_pred EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHH
Q 014525 312 VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQ 351 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~ 351 (423)
+|.+|+.++.+-|.+++ |+ ..+.|++ +.+...+++.
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 88888889999999999 88 6788876 5555555554
No 263
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.39 E-value=1.5e-06 Score=79.37 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=52.1
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-hhh----------------------chHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-FIG----------------------DGAKLVR 253 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~-~~g----------------------~~~~~~~ 253 (423)
|+++...++++||||+|||+++..++... +...++++..++... +.. +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 66667779999999999999999988654 567788877542111 000 0011133
Q ss_pred HHHHHHHhCCCeEEEECCchhhhc
Q 014525 254 DAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 254 ~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
.+...+....+.+|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 334445556789999999998863
No 264
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3e-05 Score=74.52 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=84.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCC-------------cEEEEccchhhhhhhhchHHHHHHHHHHHHh-----CCCe
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNA-------------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE-----KSPC 265 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~-------------~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~ 265 (423)
+..+||+|+.|+||+.+|+.+++.+-+ .++.++... .. -.-..++.+.+.+.. ..+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---Cc--CCHHHHHHHHHHhccCCcccCCce
Confidence 346889999999999999999998722 122232100 00 111234444444321 3567
Q ss_pred EEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHH
Q 014525 266 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 345 (423)
Q Consensus 266 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 345 (423)
|++||++|.+. ...++.|+..+++ +..++++|.+|+.++.+-|.+++ |+ .++.|++|+.++
T Consensus 93 vvII~~~e~m~-----------~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~ 153 (299)
T PRK07132 93 ILIIKNIEKTS-----------NSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQK 153 (299)
T ss_pred EEEEecccccC-----------HHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHH
Confidence 99999999873 3455666666654 34566777777778889999988 76 689999999888
Q ss_pred HHHHHHH
Q 014525 346 RARILQI 352 (423)
Q Consensus 346 r~~Il~~ 352 (423)
..+.+..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 8877654
No 265
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.38 E-value=1.2e-06 Score=71.23 Aligned_cols=23 Identities=39% Similarity=0.808 Sum_probs=20.7
Q ss_pred ceEEcCCCCChhHHHHHHHHHhC
Q 014525 207 VLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
|+|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998763
No 266
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.36 E-value=8.7e-06 Score=92.53 Aligned_cols=177 Identities=21% Similarity=0.356 Sum_probs=98.4
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE---EEEccc---
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF---LKLAGP--- 238 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~---i~v~~~--- 238 (423)
+...+++++|.+..++++...+.. +....+.+-|+||+|+||||||+++++.+...| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 456789999999999998876632 123445689999999999999999988774322 112110
Q ss_pred ---hhhh-----hh---hhchHHHHH-------------HHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHH
Q 014525 239 ---QLVQ-----MF---IGDGAKLVR-------------DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM 294 (423)
Q Consensus 239 ---~l~~-----~~---~g~~~~~~~-------------~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 294 (423)
+... .+ .......+. ......-..++.+|+||+++.. . .
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~---~- 310 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------D---V- 310 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------H---H-
Confidence 0000 00 000000000 0111112345678999998652 1 1
Q ss_pred HHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCH----HHHHH
Q 014525 295 LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF----EELAR 370 (423)
Q Consensus 295 ~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l----~~la~ 370 (423)
.+.+......... +..||.||. +..+.+....+.++.++.|+.++..+++..++-+.... ..++ ..++.
T Consensus 311 l~~L~~~~~~~~~-GsrIIiTTr-----d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 311 LDALAGQTQWFGS-GSRIIVITK-----DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHHHhhCccCCC-CcEEEEEeC-----cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 1222221111122 334566666 33444333567889999999999999988766432222 1222 34556
Q ss_pred hCCCCc
Q 014525 371 STDDFN 376 (423)
Q Consensus 371 ~~~g~s 376 (423)
++.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 666654
No 267
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.32 E-value=4.7e-06 Score=82.67 Aligned_cols=227 Identities=22% Similarity=0.237 Sum_probs=128.4
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCC--CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc-cchhhhhhhhc
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRP--PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA-GPQLVQMFIGD 247 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~--~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~-~~~l~~~~~g~ 247 (423)
.|.|.+++++.+.-.+.-.... ...-|++- .-+++|.|.||+.||-|.+.+.+-.....++.. +|.- +|-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~---~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG----VGL 415 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDK---SPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG----VGL 415 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCC---CCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc----ccc
Confidence 4778888887776655322211 11112221 225999999999999999999987655444332 2211 111
Q ss_pred hHHHHHH-HHH-------HHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHh--------hcCCCCCCCeE
Q 014525 248 GAKLVRD-AFQ-------LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ--------LDGFSSDDRIK 311 (423)
Q Consensus 248 ~~~~~~~-~~~-------~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~--------~~~~~~~~~v~ 311 (423)
+...++. +.. ..--...+|.+|||+|++... ++ ..+-+++++ .-...-..++-
T Consensus 416 TAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------DR---tAIHEVMEQQTISIaKAGI~TtLNAR~s 484 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------DR---TAIHEVMEQQTISIAKAGINTTLNARTS 484 (721)
T ss_pred chhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------hh---HHHHHHHHhhhhhhhhhccccchhhhHH
Confidence 1111100 000 000123479999999998532 11 223333322 11122234667
Q ss_pred EEEEcCCCC-------------CCChhhhcCCCcceEEEc-CCCCHHHHHHHHHHHh------hcCCCC-CCCCH-----
Q 014525 312 VIAATNRAD-------------ILDPALMRSGRLDRKIEF-PHPTEEARARILQIHS------RKMNVH-PDVNF----- 365 (423)
Q Consensus 312 vI~ttn~~~-------------~l~~~l~~~~Rf~~~i~~-~~p~~~~r~~Il~~~~------~~~~~~-~~~~l----- 365 (423)
|++++|+.. .|+++|++ |||..+-+ ..|+.+.-..+.++.. ..-... ..++.
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~ 562 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRR 562 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHH
Confidence 888888642 38999999 99985544 4676655444444332 111100 01111
Q ss_pred -------------HHHHH-----------h---C---CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 366 -------------EELAR-----------S---T---DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 366 -------------~~la~-----------~---~---~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
..|+. . . ..-|++-|-.+++.+...|..|-...|..+|+.+|++-+.-++
T Consensus 563 yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482|consen 563 YISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhh
Confidence 11111 0 0 1235788889999999999888899999999999999998766
Q ss_pred hh
Q 014525 416 KA 417 (423)
Q Consensus 416 ~~ 417 (423)
+.
T Consensus 643 ~s 644 (721)
T KOG0482|consen 643 DS 644 (721)
T ss_pred cc
Confidence 54
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.31 E-value=2.7e-06 Score=70.14 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=41.9
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCC--CceEEcCCCCChhHHHHHHHHHh
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPK--GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~--~vLl~Gp~GtGKT~la~ala~~l 228 (423)
..|.||.-+.+.+..++...+..+ .|.+ .+-|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 568899999999999998776553 2333 45699999999999999999986
No 269
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.31 E-value=2.2e-06 Score=86.81 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=107.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHH-----HHHHHH---HHHhCCCeEEEECCchhhhc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKL-----VRDAFQ---LAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~-----~~~~~~---~a~~~~~~vl~iDEid~l~~ 277 (423)
++||+|.||||||-+.|.+++-....++......- -+|-+... .+..+- ..--...+|.+|||+|++..
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGAS---avGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGAS---AVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCcc---ccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc
Confidence 59999999999999999999877655543321100 00000000 000000 00012347999999999853
Q ss_pred cCCCCCCCCcHHHHHHHHHHH----HhhcCCCCCCCeEEEEEcCCCC-------------CCChhhhcCCCcceEEEcC-
Q 014525 278 KRFDSEVSGDREVQRTMLELL----NQLDGFSSDDRIKVIAATNRAD-------------ILDPALMRSGRLDRKIEFP- 339 (423)
Q Consensus 278 ~r~~~~~~~~~~~~~~l~~ll----~~~~~~~~~~~v~vI~ttn~~~-------------~l~~~l~~~~Rf~~~i~~~- 339 (423)
.... .+...+-|-- ..+-...-+..+.||+|+|+.. .+...+++ |||....+.
T Consensus 561 qDRt-------SIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD 631 (854)
T KOG0477|consen 561 QDRT-------SIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKD 631 (854)
T ss_pred cccc-------hHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--hcceeeeeec
Confidence 2211 1111111100 0000011234677999999721 35566777 898755443
Q ss_pred --CCCHHHHH--HHHHHHhhcCCCC--------------------------------------CCCCHHHHHHh------
Q 014525 340 --HPTEEARA--RILQIHSRKMNVH--------------------------------------PDVNFEELARS------ 371 (423)
Q Consensus 340 --~p~~~~r~--~Il~~~~~~~~~~--------------------------------------~~~~l~~la~~------ 371 (423)
-|-.+++. -++..+.+..+-. ...|.+.++..
T Consensus 632 ~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRk 711 (854)
T KOG0477|consen 632 TVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRK 711 (854)
T ss_pred ccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh
Confidence 22222222 2333343321111 11122222221
Q ss_pred ---CCC---CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 372 ---TDD---FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 372 ---~~g---~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
..| .+.+-|..+++.+...|..+-+..|+.+|+..|+.-+..+.
T Consensus 712 ES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSf 761 (854)
T KOG0477|consen 712 ESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSF 761 (854)
T ss_pred hccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHH
Confidence 112 35688999999999999889999999999999999988754
No 270
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.29 E-value=2.8e-05 Score=74.38 Aligned_cols=173 Identities=20% Similarity=0.268 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHH--hCCc---EEEEccch------hhhh-
Q 014525 176 EKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ--TNAT---FLKLAGPQ------LVQM- 243 (423)
Q Consensus 176 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~--l~~~---~i~v~~~~------l~~~- 243 (423)
+..+++|.+.+.... ...+.+.|+|++|+|||+||..+++. .... ++.++.+. +...
T Consensus 2 e~~~~~l~~~L~~~~-----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS-----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTTT-----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-----------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 455666666653211 24456999999999999999999987 3322 23333321 1111
Q ss_pred --hhh----------chHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 244 --FIG----------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 244 --~~g----------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
..+ ........+.+.. ...+.+|+||+++... .+..+...+.. ...+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEE----------------DLEELREPLPS--FSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHH----------------HH-------HC--HHSS-E
T ss_pred cccccccccccccccccccccccchhhh-ccccceeeeeeecccc----------------ccccccccccc--cccccc
Confidence 011 1222333333333 3447999999997641 12112211111 112456
Q ss_pred EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHhCCCCcHHHHHHH
Q 014525 312 VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV----HPDVNFEELARSTDDFNGAQLKAV 383 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~----~~~~~l~~la~~~~g~s~~dl~~l 383 (423)
||.||.... +-.... .....+.++.++.++-.+++......... ..+.....|+..+.|. |-.|..+
T Consensus 132 ilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 132 ILVTTRDRS-VAGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp EEEEESCGG-GGTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccc-cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 777776432 211111 12578999999999999999988654331 1122256788888764 5555544
No 271
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.28 E-value=1.3e-05 Score=77.38 Aligned_cols=161 Identities=21% Similarity=0.276 Sum_probs=92.7
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh------
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM------ 243 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~------ 243 (423)
..+.+.+.++..+...+.. . .-.-|..++|||.+|||||++++++.+.++.+.+.++|-+...-
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---~-------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---N-------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cCccchHHHHHHHHHHhCC---C-------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 3466888898888876521 1 11245678999999999999999999999999999987654321
Q ss_pred ---------hhhchHH----HHH---HHHHH---HHhC-CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC
Q 014525 244 ---------FIGDGAK----LVR---DAFQL---AKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 303 (423)
Q Consensus 244 ---------~~g~~~~----~~~---~~~~~---a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~ 303 (423)
+-|...+ .+. ..+.. +.+. ..-+|++|++|.+-. .+......+.++-.-
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el--- 144 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYEL--- 144 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHH---
Confidence 0111111 111 11222 2222 346788999999841 122333333333222
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHh
Q 014525 304 FSSDDRIKVIAATNRADILDPALMRSGRLD-RKIEFPHPTEEARARILQIHS 354 (423)
Q Consensus 304 ~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~ 354 (423)
.....+.+|...-.... .-+.+-|-++ ..++||.|+.++...|+..-.
T Consensus 145 -~~~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 145 -LNEPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred -hCCCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22234444444322211 1111223332 478999999999999886543
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.25 E-value=1.4e-05 Score=68.34 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+-.++++|+||+|||+++..+++.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3469999999999999999999877
No 273
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.22 E-value=1.4e-05 Score=71.32 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=45.2
Q ss_pred CceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh------hhc-----------------------hH----
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGD-----------------------GA---- 249 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~------~g~-----------------------~~---- 249 (423)
.++++||||||||+++..++... +.++++++..+-.... .|. ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 37899999999999999887654 5666666643221110 000 00
Q ss_pred -HHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 250 -KLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 250 -~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
.....+...+....|.+|+||++..+.
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~ 108 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLL 108 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHh
Confidence 112334445556778999999999875
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.20 E-value=1.2e-05 Score=79.70 Aligned_cols=80 Identities=24% Similarity=0.410 Sum_probs=55.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh------hhc--------hHHHHHHHHHHHHhC
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGD--------GAKLVRDAFQLAKEK 262 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~------~g~--------~~~~~~~~~~~a~~~ 262 (423)
|+.+...++|+||||+|||+++..+|... +.++++++..+-.... +|. .+..+..+.+.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56677779999999999999999998765 3567777665432211 110 112234566666777
Q ss_pred CCeEEEECCchhhhccC
Q 014525 263 SPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 263 ~~~vl~iDEid~l~~~r 279 (423)
.|.+|+||.|..+....
T Consensus 158 ~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 158 KPDLVIIDSIQTVYSSE 174 (372)
T ss_pred CCcEEEEcchHHhhccc
Confidence 89999999999986443
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.20 E-value=5.5e-06 Score=91.50 Aligned_cols=139 Identities=22% Similarity=0.306 Sum_probs=96.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh--hhhc-----hHHH--HH-HHHHHHHhCCCeEEEECCch
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM--FIGD-----GAKL--VR-DAFQLAKEKSPCIIFIDEID 273 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~--~~g~-----~~~~--~~-~~~~~a~~~~~~vl~iDEid 273 (423)
.+++||-|.||+|||.|..++|+..|..++++|.++-... .+|. ..+. ++ .-|-.+.+. ..-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhh
Confidence 3579999999999999999999999999999998753221 1221 0011 11 122233333 3689999997
Q ss_pred hhhccCCCCCCCCcHHHHHHHHHHHHhhc---------CCCCCCCeEEEEEcCCCC------CCChhhhcCCCcceEEEc
Q 014525 274 AIGTKRFDSEVSGDREVQRTMLELLNQLD---------GFSSDDRIKVIAATNRAD------ILDPALMRSGRLDRKIEF 338 (423)
Q Consensus 274 ~l~~~r~~~~~~~~~~~~~~l~~ll~~~~---------~~~~~~~v~vI~ttn~~~------~l~~~l~~~~Rf~~~i~~ 338 (423)
.. ...+..-|...|+... .+..+.++.|+||-|+.+ .|+..+++ || .+|++
T Consensus 1622 La-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~ 1687 (4600)
T COG5271 1622 LA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKM 1687 (4600)
T ss_pred hh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEe
Confidence 63 3445556666665422 234456899999998653 48999999 99 57888
Q ss_pred CCCCHHHHHHHHHHHhhcC
Q 014525 339 PHPTEEARARILQIHSRKM 357 (423)
Q Consensus 339 ~~p~~~~r~~Il~~~~~~~ 357 (423)
..++.++...|.......+
T Consensus 1688 d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1688 DGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred cccccchHHHHHHhhCCcc
Confidence 8899888888887766543
No 276
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.19 E-value=1.2e-05 Score=81.87 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=56.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh------hhc--------hHHHHHHHHHHHHhC
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGD--------GAKLVRDAFQLAKEK 262 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~------~g~--------~~~~~~~~~~~a~~~ 262 (423)
|+.+...++|+||||+|||+|+..++... +.++++++..+-.... .|. .+..+..++..+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 66777779999999999999999998865 5677888765533321 111 111234566666777
Q ss_pred CCeEEEECCchhhhccC
Q 014525 263 SPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 263 ~~~vl~iDEid~l~~~r 279 (423)
.|.+|+||.+..+....
T Consensus 156 ~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPE 172 (446)
T ss_pred CCCEEEEechhhhcccc
Confidence 88999999999886543
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.19 E-value=2.3e-05 Score=72.70 Aligned_cols=110 Identities=13% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh----hh--hh-----------------------c
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ----MF--IG-----------------------D 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~----~~--~g-----------------------~ 247 (423)
|+++...++++||||||||+++..++..+ +...++++..+-.. .. .| .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45666779999999999999975554433 45666665432111 10 00 0
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 248 --GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 248 --~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
....+..+...+....|.++++|++-.+.... .++...+.+.+++..+.. .+. .++.|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~------~d~~~~~~l~~~l~~l~~---~g~-tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND------ASEVAVNDLMAFFKRISS---LNK-VIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC------cchHHHHHHHHHHHHHHh---CCC-EEEEEeccc
Confidence 12233344455545578999999998864211 123333455666655432 223 456666643
No 278
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.19 E-value=5.7e-06 Score=75.71 Aligned_cols=108 Identities=24% Similarity=0.275 Sum_probs=56.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch--hhhh--------hhhchHHHHHHHHHHHH--hCCCeEEEECC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ--LVQM--------FIGDGAKLVRDAFQLAK--EKSPCIIFIDE 271 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~--l~~~--------~~g~~~~~~~~~~~~a~--~~~~~vl~iDE 271 (423)
|..+||||+||+|||++|+.++.. ..++..+++. +... ........+.+.+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 456999999999999999998732 2233333211 0000 00011112222233332 35578999999
Q ss_pred chhhhc------cCCC-C---CCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 014525 272 IDAIGT------KRFD-S---EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 315 (423)
Q Consensus 272 id~l~~------~r~~-~---~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~t 315 (423)
++.+.. .+.. + ...+-..+...+..++..+.. ...+|++++-
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~--~g~nII~tAh 141 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE--SNKNIYATAW 141 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh--CCCcEEEEEe
Confidence 998755 1211 1 122233455566666666543 2235555553
No 279
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.18 E-value=1e-05 Score=78.19 Aligned_cols=118 Identities=23% Similarity=0.302 Sum_probs=68.2
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh----------------hhhchHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----------------FIGDGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 260 (423)
|+++.+.++|+||||||||+||-.++... +.++++++..+.... .....+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666779999999999999988776554 667777776543221 01112223333334455
Q ss_pred hCCCeEEEECCchhhhccC-CCCCCC-CcHHHH-HHHHHHHHhhcCCCCCCCeEEEEEcC
Q 014525 261 EKSPCIIFIDEIDAIGTKR-FDSEVS-GDREVQ-RTMLELLNQLDGFSSDDRIKVIAATN 317 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~~r-~~~~~~-~~~~~~-~~l~~ll~~~~~~~~~~~v~vI~ttn 317 (423)
...+.+|+||-+..+.+.. .++..+ .+...+ +.+.+++..+...-...++.+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 6678999999999987642 111111 111122 22334444444333445667777744
No 280
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.18 E-value=2.5e-05 Score=77.68 Aligned_cols=198 Identities=22% Similarity=0.274 Sum_probs=109.8
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHH----H--H--HHHhCCCeEEEECCchhhhc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDA----F--Q--LAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~----~--~--~a~~~~~~vl~iDEid~l~~ 277 (423)
+|||.|.|||.||-|.+.+-.-....+++-....-. .|-+...++.- | + ..--...+|++|||+|++-.
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSA---AGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre 442 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSA---AGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE 442 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEecCCCccc---ccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc
Confidence 599999999999999999877654443322110000 00000000000 0 0 00012358999999999842
Q ss_pred cCCCCCCCCcHHHHHHHHH----HHHhhcCCCCCCCeEEEEEcCCCC-------------CCChhhhcCCCcceEEEcCC
Q 014525 278 KRFDSEVSGDREVQRTMLE----LLNQLDGFSSDDRIKVIAATNRAD-------------ILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 278 ~r~~~~~~~~~~~~~~l~~----ll~~~~~~~~~~~v~vI~ttn~~~-------------~l~~~l~~~~Rf~~~i~~~~ 340 (423)
.. .. .+...+-| +-...-...-+.++-|++++|++. .+-+.+++ |||.++-+.-
T Consensus 443 ~D---RV----AIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD 513 (729)
T KOG0481|consen 443 DD---RV----AIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKD 513 (729)
T ss_pred hh---hh----HHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEec
Confidence 10 00 11122211 111111122234667888888641 25588998 9999888875
Q ss_pred CCHHHHHH-----HHHHHhhcCCCC--------CCCCHHHHHH-----------------------h-------------
Q 014525 341 PTEEARAR-----ILQIHSRKMNVH--------PDVNFEELAR-----------------------S------------- 371 (423)
Q Consensus 341 p~~~~r~~-----Il~~~~~~~~~~--------~~~~l~~la~-----------------------~------------- 371 (423)
-..+++-. ++..|..+.+.. ..+.++.+-+ .
T Consensus 514 ~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~ 593 (729)
T KOG0481|consen 514 EHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQ 593 (729)
T ss_pred cCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhh
Confidence 44443333 333333211111 1111111110 0
Q ss_pred ------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 372 ------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 372 ------~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
+-..+.++|+++++-+...|-.+-....|..|+++|++-.+-+-
T Consensus 594 ~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vST 643 (729)
T KOG0481|consen 594 DSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVST 643 (729)
T ss_pred cccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhh
Confidence 11356799999999999999999999999999999999887654
No 281
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.15 E-value=0.00011 Score=73.62 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=72.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS 285 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~ 285 (423)
.++++||.+||||++++.+...+...++.++..+........ .........+.......||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999999988875556666555443332211 11111222222224469999999985
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHH
Q 014525 286 GDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARAR 348 (423)
Q Consensus 286 ~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~ 348 (423)
++....+..+.+.... ++++.+++...-....+-.-+||. ..+.+.|.+..+...
T Consensus 107 --~~W~~~lk~l~d~~~~-----~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGNL-----DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHccccc-----eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 3556666666654221 343333332221112222225785 677888889988865
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.15 E-value=1.1e-05 Score=77.99 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=68.1
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-h---------------hhchHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-F---------------IGDGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~-~---------------~g~~~~~~~~~~~~a~ 260 (423)
|+++.+.+.++||||||||+||-.++... +..+++++..+-... + ....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56666679999999999999999877544 677778876432111 0 1112223333333445
Q ss_pred hCCCeEEEECCchhhhccC-CCCCCC-CcHHHH-HHHHHHHHhhcCCCCCCCeEEEEEcC
Q 014525 261 EKSPCIIFIDEIDAIGTKR-FDSEVS-GDREVQ-RTMLELLNQLDGFSSDDRIKVIAATN 317 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~~r-~~~~~~-~~~~~~-~~l~~ll~~~~~~~~~~~v~vI~ttn 317 (423)
...+.+|+||-+-.+.+.. .++... .+...+ +.+.+.+..+...-...++.+|+|..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6678999999999988632 111111 111122 23445554444333445666776644
No 283
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.14 E-value=1.1e-05 Score=74.45 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=32.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
|+.++..++|+||||+|||++|..+|... +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 66666678999999999999999998754 6677778776
No 284
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.14 E-value=4.2e-05 Score=75.79 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=48.6
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
...++++.||+|||||+++.+++... | -.++.+.++..... ..... -..+.+|+|||+..+.-.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgylp~~ 275 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATLKFA 275 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCCcCC
Confidence 45689999999999999999988762 3 23334444333211 11111 234579999999986432
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh
Q 014525 279 RFDSEVSGDREVQRTMLELLNQ 300 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~ 300 (423)
...+...+|...+..
T Consensus 276 -------~~~~~v~imK~yMes 290 (449)
T TIGR02688 276 -------KPKELIGILKNYMES 290 (449)
T ss_pred -------chHHHHHHHHHHHHh
Confidence 234455566555543
No 285
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.12 E-value=2e-05 Score=87.40 Aligned_cols=135 Identities=20% Similarity=0.309 Sum_probs=96.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh------hhhhhhchHHHH---HHHHHHHHhCCCeEEEECCchhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL------VQMFIGDGAKLV---RDAFQLAKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l------~~~~~g~~~~~~---~~~~~~a~~~~~~vl~iDEid~l 275 (423)
..+||.||+.+|||.....+|+..+..|+++|-.+. ++.|+....+.+ ..+.-.|.++. .-|++||+..
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNL- 966 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNL- 966 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeecccc-
Confidence 359999999999999999999999999999987654 333332222211 12233333434 4688999976
Q ss_pred hccCCCCCCCCcHHHHHHHHHHHHhhcC---------CCCCCCeEEEEEcCCCC------CCChhhhcCCCcceEEEcCC
Q 014525 276 GTKRFDSEVSGDREVQRTMLELLNQLDG---------FSSDDRIKVIAATNRAD------ILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 276 ~~~r~~~~~~~~~~~~~~l~~ll~~~~~---------~~~~~~v~vI~ttn~~~------~l~~~l~~~~Rf~~~i~~~~ 340 (423)
+..++...|.++|+.-+. +.++.++.++||-|+|. .|..++++ || ..++|.-
T Consensus 967 ----------ApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 967 ----------APTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred ----------CcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 456888999999975432 23456888999999875 37899998 99 5677776
Q ss_pred CCHHHHHHHHHHHh
Q 014525 341 PTEEARARILQIHS 354 (423)
Q Consensus 341 p~~~~r~~Il~~~~ 354 (423)
-..++...|++..+
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 67778888876544
No 286
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.09 E-value=0.00018 Score=70.22 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---------------CCChhh
Q 014525 262 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD---------------ILDPAL 326 (423)
Q Consensus 262 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~---------------~l~~~l 326 (423)
..+-||+|||+|++.+ +-...+++.+.. +-...++++|.+.+... ......
T Consensus 171 ~~~iViiIDdLDR~~~-----------~~i~~~l~~ik~---~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP-----------EEIVELLEAIKL---LLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcCCc-----------HHHHHHHHHHHH---hcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 3467999999999843 222233333433 33336777777776310 112233
Q ss_pred hcCCCcceEEEcCCCCHHHHHHHHHHHhhcC
Q 014525 327 MRSGRLDRKIEFPHPTEEARARILQIHSRKM 357 (423)
Q Consensus 327 ~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~ 357 (423)
+.. -|+..+.+|+|+..+...++...+...
T Consensus 237 LeK-iiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 237 LEK-IIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred HHh-hcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 331 467789999999998888887775543
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.07 E-value=2.1e-05 Score=73.15 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=50.4
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh--------------hh-----------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM--------------FI----------------- 245 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~--------------~~----------------- 245 (423)
|++++..++++||||||||+++.+++... +.++++++..+-... +.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 66777789999999999999999997643 566666664322111 00
Q ss_pred --hchHHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 246 --GDGAKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 246 --g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
......+..+.+.+....|.+++||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0012233334445555678999999998763
No 288
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=4.9e-06 Score=76.04 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.+++|+|+||||||++|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 289
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.04 E-value=1.4e-05 Score=86.30 Aligned_cols=202 Identities=15% Similarity=0.267 Sum_probs=118.7
Q ss_pred CcccccCchHHHHHHHHHHHccccC-hhHHhhhCCCCC-C-CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTH-KERFQKLGVRPP-K-GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~-~~~~~~~g~~~~-~-~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
....+.|.......+.+++...-.. +-.|...+.... . .++++||||+|||+.+..+|.+++..++.+|.+..-+++
T Consensus 318 ~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~ 397 (871)
T KOG1968|consen 318 SSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKK 397 (871)
T ss_pred cHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccccc
Confidence 3355666666666666655433111 111111111111 1 269999999999999999999999999999987654432
Q ss_pred h-----hc--hHHHHHHHH---H--HHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 245 I-----GD--GAKLVRDAF---Q--LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 245 ~-----g~--~~~~~~~~~---~--~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
. |. ....+...+ . ...+....||++||+|.+.. .++.....+.+++.. ...-+
T Consensus 398 ~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~k-------s~~Pi 462 (871)
T KOG1968|consen 398 ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCKK-------SSRPL 462 (871)
T ss_pred HHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHHh-------ccCCe
Confidence 1 11 111111122 0 01112235999999999864 233444455555542 23347
Q ss_pred EEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 313 IAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 313 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
|+++|........-+. |-+..+.|+.|+...+..-+...+....+. .+..+..+...+ ++||++++.+-.+.
T Consensus 463 v~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 463 VCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred EEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 8888866655543443 556789999999998888777666543333 223366666655 56777776666555
No 290
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.04 E-value=7.4e-06 Score=83.79 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=48.3
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-CcEEEEcc
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-ATFLKLAG 237 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-~~~i~v~~ 237 (423)
.-|+++.|+++++..+.+.+....... + .....++|.||||+|||+||++||+.+. .+++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl------~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGL------E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhc------C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 358889999999999999885443321 1 2334689999999999999999999873 45665543
No 291
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.04 E-value=4.3e-06 Score=69.14 Aligned_cols=31 Identities=26% Similarity=0.640 Sum_probs=27.2
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
++|.||||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999987765553
No 292
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.02 E-value=2.7e-05 Score=71.56 Aligned_cols=39 Identities=36% Similarity=0.498 Sum_probs=31.4
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
|+.++..++++||||+|||+++..+|... +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 66666779999999999999999998765 4567777553
No 293
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=8e-05 Score=80.15 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=110.9
Q ss_pred cccccCc-hHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEEcc
Q 014525 169 YNDIGGL-EKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAG 237 (423)
Q Consensus 169 ~~~i~G~-~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v~~ 237 (423)
.+.++|. ++.++.+.+.+.. +..++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 4567777 8888888886632 234688999999999999999999976 245666666
Q ss_pred chhhh--hhhhchHHHHHHHHHHHH-hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 014525 238 PQLVQ--MFIGDGAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 314 (423)
Q Consensus 238 ~~l~~--~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ 314 (423)
..++. ++.|+.+..++.+...+. .....||||||+|.+.+.... .+..+..+.|..++.. +.+.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L~r-------g~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLLAR-------GGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHHhc-------CCeEEEe
Confidence 54443 467788888888888887 446678899999999765422 1122333333333332 3478888
Q ss_pred EcCCC-----CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc
Q 014525 315 ATNRA-----DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK 356 (423)
Q Consensus 315 ttn~~-----~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~ 356 (423)
||... -.-+|++-+ ||+ .+.++.|+.+....|+......
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 77632 235799988 895 5678888887766666655444
No 294
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.99 E-value=7.3e-05 Score=69.99 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=65.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc------EEEEcc------chhhhhh--------hhchH-HH---HHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT------FLKLAG------PQLVQMF--------IGDGA-KL---VRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~------~i~v~~------~~l~~~~--------~g~~~-~~---~~~~~~~ 258 (423)
.+..++|+||+|+|||++++.+++.+... ++.+.. .++.... .+.+. .. ...++..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 45569999999999999999999987432 333111 1222221 11111 11 1122222
Q ss_pred HH----hCCCeEEEECCchhhhccCCC-------CCC-CCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q 014525 259 AK----EKSPCIIFIDEIDAIGTKRFD-------SEV-SGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 317 (423)
Q Consensus 259 a~----~~~~~vl~iDEid~l~~~r~~-------~~~-~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn 317 (423)
+. .....+||+||++++.....+ ... +.++.+...+-+++.........+.+.++.|..
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~ 165 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATAL 165 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehe
Confidence 22 245679999999998643211 111 224555666677776554444456777776654
No 295
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.96 E-value=5.3e-05 Score=65.26 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.3
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.++-.++|+||+|||||+|.+++|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4566679999999999999999999854
No 296
>PHA02624 large T antigen; Provisional
Probab=97.96 E-value=2.3e-05 Score=80.58 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=68.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
|++..+.++|+||||||||+++.+|++.++...+.++++.-... |...-...-.+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 55555689999999999999999999999777777886542111 111111112478888885432110
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCC-------CCCC-----CeEEEEEcCCCCCCChhhhcCCCcceEEEcCC
Q 014525 280 FDSEVSGDREVQRTMLELLNQLDGF-------SSDD-----RIKVIAATNRADILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~~~-------~~~~-----~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 340 (423)
.+ -+.+. .+. -+..+=+.++|. .... -...|.||| ...++..+.- ||..++.|.+
T Consensus 495 ~~-Lp~G~-~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KD-LPSGQ-GMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cc-CCccc-ccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHH--HHHHhccccc
Confidence 00 00000 000 011122233332 0011 123577888 3457777776 9999998864
No 297
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.95 E-value=7.4e-06 Score=72.82 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=39.4
Q ss_pred ccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc---EEEEccchh
Q 014525 172 IGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAGPQL 240 (423)
Q Consensus 172 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~---~i~v~~~~l 240 (423)
++|.+++++.+...+. .... ..++.++|+||+|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6799999999999875 2222 345789999999999999999998877332 777777655
No 298
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.91 E-value=1.1e-05 Score=71.14 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=30.5
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.++..++|+||||||||++|+.+|+.++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999998887443
No 299
>PRK08118 topology modulation protein; Reviewed
Probab=97.91 E-value=2.1e-05 Score=69.19 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=29.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
.++++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887774
No 300
>PRK09354 recA recombinase A; Provisional
Probab=97.89 E-value=7e-05 Score=73.07 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=51.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-h---------------hhchHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-F---------------IGDGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~-~---------------~g~~~~~~~~~~~~a~ 260 (423)
|++..+.++|+||||||||+||-.++... +..+++++..+-... + ....+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666679999999999999998776543 677777876542211 0 1112222322333445
Q ss_pred hCCCeEEEECCchhhhc
Q 014525 261 EKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~ 277 (423)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999876
No 301
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.88 E-value=0.00011 Score=74.93 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=54.6
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh------hhch--------HHHHHHHHHHHHhC
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IGDG--------AKLVRDAFQLAKEK 262 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~------~g~~--------~~~~~~~~~~a~~~ 262 (423)
|+.+...++|+|+||+|||+|+..++... +.++++++..+-.... +|.. +..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 66777779999999999999999998765 3567777765433221 1110 11234555666677
Q ss_pred CCeEEEECCchhhhcc
Q 014525 263 SPCIIFIDEIDAIGTK 278 (423)
Q Consensus 263 ~~~vl~iDEid~l~~~ 278 (423)
.|.+|+||.|..+...
T Consensus 170 ~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 170 NPQACVIDSIQTLYSP 185 (454)
T ss_pred CCcEEEEecchhhccc
Confidence 8899999999988643
No 302
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.87 E-value=0.00038 Score=70.35 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=29.6
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccch
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 239 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~ 239 (423)
+|..++|+|++|+|||+++..+|..+ +..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 56789999999999999999999877 45555565543
No 303
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.87 E-value=0.0001 Score=72.46 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=62.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCC-----cEEEEccchh-------hhh---------hhhchHHHHH---HHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNA-----TFLKLAGPQL-------VQM---------FIGDGAKLVR---DAFQLA 259 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~-----~~i~v~~~~l-------~~~---------~~g~~~~~~~---~~~~~a 259 (423)
+...+|+||||+|||+|++.|++.... .++.+...+. ... +-......++ .+++.|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345999999999999999999997632 2222222221 111 1111111221 222222
Q ss_pred H----hCCCeEEEECCchhhhccCCC-----C---CCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 260 K----EKSPCIIFIDEIDAIGTKRFD-----S---EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 260 ~----~~~~~vl~iDEid~l~~~r~~-----~---~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
+ .....+|||||++++...... + ..+-++......-.++.........+.+.+|+|.
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2 345579999999998653311 0 0123445555666777665555455677777774
No 304
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.87 E-value=0.00029 Score=65.18 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=77.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCc--EEEEccchhhhhh--------hh------chHHHHH---H-HHHHHH-
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNAT--FLKLAGPQLVQMF--------IG------DGAKLVR---D-AFQLAK- 260 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~--~i~v~~~~l~~~~--------~g------~~~~~~~---~-~~~~a~- 260 (423)
..|-.+++.|++|||||+++..+...+... .+.+-++.....| +. ..+..+. . +.....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 345689999999999999999998876432 2222222111111 00 0011111 1 111111
Q ss_pred --h---CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceE
Q 014525 261 --E---KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRK 335 (423)
Q Consensus 261 --~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~ 335 (423)
. .++.+|+||++.. ...-...+.+++..++ +-++.+|.++...-.+++.++. -.+.+
T Consensus 91 ~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEE
Confidence 1 2367999999742 0111235666776433 3468888888888999999876 67777
Q ss_pred EEcCCCCHHHHHHHHHHHh
Q 014525 336 IEFPHPTEEARARILQIHS 354 (423)
Q Consensus 336 i~~~~p~~~~r~~Il~~~~ 354 (423)
+.++ .+......|++.+.
T Consensus 153 i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred EEec-CcHHHHHHHHHhcc
Confidence 7775 46666666655543
No 305
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.87 E-value=3.3e-05 Score=69.71 Aligned_cols=123 Identities=20% Similarity=0.165 Sum_probs=57.8
Q ss_pred ceEEcCCCCChhHHHHHH-HHH-h--CCcEEEEccchhhhhhh----hchHH-------------HHHHHHHHHHhCCCe
Q 014525 207 VLLYGPPGTGKTLMARAC-AAQ-T--NATFLKLAGPQLVQMFI----GDGAK-------------LVRDAFQLAKEKSPC 265 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~al-a~~-l--~~~~i~v~~~~l~~~~~----g~~~~-------------~~~~~~~~a~~~~~~ 265 (423)
.+++|.||+|||+.|-.. ... + +.+++. |...+--..+ +.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988554 332 2 555554 5442221110 00000 000111111111468
Q ss_pred EEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCC
Q 014525 266 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHP 341 (423)
Q Consensus 266 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 341 (423)
+|+|||++.+.+.+..... .....+ +++... .+.++-||.+|..+..+++.++. ..+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~----~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK----KVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccc----cchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 9999999999987743211 112233 444432 23456789999999999999986 77777666543
No 306
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.86 E-value=0.00019 Score=66.91 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|++++..+|++||||||||+++..++.+. +.+.++++.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 77778889999999999999998765542 556666654
No 307
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00012 Score=66.24 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC--------CcEEEEcc-chhhhhhhhc-------------hHHHHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN--------ATFLKLAG-PQLVQMFIGD-------------GAKLVRDAFQLAKEK 262 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~--------~~~i~v~~-~~l~~~~~g~-------------~~~~~~~~~~~a~~~ 262 (423)
.+.|+.||||||||++.+-+|+-+. ..+..++- +++.....|. ..-.-..+...++.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 3589999999999999999999762 23444543 2332222221 111123456778889
Q ss_pred CCeEEEECCchh
Q 014525 263 SPCIIFIDEIDA 274 (423)
Q Consensus 263 ~~~vl~iDEid~ 274 (423)
.|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999965
No 308
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.85 E-value=7.4e-05 Score=67.67 Aligned_cols=67 Identities=27% Similarity=0.435 Sum_probs=42.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCC----cEEEEccc-hhhhh---------hhhchHHHHHHHHHHHHhCCCeEEEECC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNA----TFLKLAGP-QLVQM---------FIGDGAKLVRDAFQLAKEKSPCIIFIDE 271 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~----~~i~v~~~-~l~~~---------~~g~~~~~~~~~~~~a~~~~~~vl~iDE 271 (423)
-++|.||+|+|||+++++++..+.. .++.+..+ ++... .+|.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999887742 23333211 22110 1122122233455566667899999999
Q ss_pred c
Q 014525 272 I 272 (423)
Q Consensus 272 i 272 (423)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.84 E-value=0.0001 Score=68.10 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=50.4
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhhh--------------h---------------h-
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM--------------F---------------I- 245 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~~--------------~---------------~- 245 (423)
|++++..+|+.||||||||.++..++... +.++++++..+-... + .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 66777789999999999999998776432 677777764321111 0 0
Q ss_pred ---hchHHHHHHHHHHHHhCCCeEEEECCchhh
Q 014525 246 ---GDGAKLVRDAFQLAKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 246 ---g~~~~~~~~~~~~a~~~~~~vl~iDEid~l 275 (423)
.........+...+....+.+++||-+..+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 122334455556666677799999999998
No 310
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.83 E-value=7.7e-05 Score=72.50 Aligned_cols=27 Identities=41% Similarity=0.738 Sum_probs=24.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+|+|++|||.-|||||+|.-.+...+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 368999999999999999999988655
No 311
>PRK07261 topology modulation protein; Provisional
Probab=97.83 E-value=3.8e-05 Score=67.90 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 238 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~ 238 (423)
.++++|+||+||||+|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 488999999999999999999999888877643
No 312
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.82 E-value=0.00069 Score=75.42 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=87.7
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch-------hhhhh---h-----hc---------------hHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ-------LVQMF---I-----GD---------------GAKLVR 253 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~-------l~~~~---~-----g~---------------~~~~~~ 253 (423)
.+-++++||+|.|||+++..++...+ ++..++... |.... + +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34699999999999999999987766 555554421 11110 0 00 001122
Q ss_pred HHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC-hhhhcCCC
Q 014525 254 DAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD-PALMRSGR 331 (423)
Q Consensus 254 ~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~-~~l~~~~R 331 (423)
.++..... ..|.+|+|||+|.+. ++.+...+..++... ..++.+|.+|.....+. ..+...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc--
Confidence 23333322 568999999999972 344555566666542 23445555665422232 122111
Q ss_pred cceEEEcC----CCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHH
Q 014525 332 LDRKIEFP----HPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKA 382 (423)
Q Consensus 332 f~~~i~~~----~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~ 382 (423)
+..+.+. +.+.++..+++...+.. .+. ......|...|.|+ +.-+..
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~~-~~~~~~l~~~t~Gw-p~~l~l 224 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PIE-AAESSRLCDDVEGW-ATALQL 224 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccCC-CCC-HHHHHHHHHHhCCh-HHHHHH
Confidence 1233344 77888888888765432 222 23467888888885 444543
No 313
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.82 E-value=5.9e-05 Score=64.16 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=28.1
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
++++||||+|||++|+.++..++ ...++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 68999999999999999999988 445565555443
No 314
>PHA02774 E1; Provisional
Probab=97.81 E-value=9.6e-05 Score=75.86 Aligned_cols=134 Identities=15% Similarity=0.249 Sum_probs=73.2
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEE-EEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFL-KLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i-~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
|.+..+.++|+||||||||++|-+|++.++..++ .+|..... | +..+... .|++|||+-.-+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F--w-----------Lqpl~d~--ki~vlDD~t~~~-- 492 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF--W-----------LQPLADA--KIALLDDATHPC-- 492 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc--c-----------cchhccC--CEEEEecCcchH--
Confidence 3333467999999999999999999999965443 35542211 1 1222222 589999992210
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhc-CC--CC-----CCCeEEEEEcCCCCCCCh---hhhcCCCcceEEEcCCC------
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLD-GF--SS-----DDRIKVIAATNRADILDP---ALMRSGRLDRKIEFPHP------ 341 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~-~~--~~-----~~~v~vI~ttn~~~~l~~---~l~~~~Rf~~~i~~~~p------ 341 (423)
...+...|..+|+.-. .+ .. .....+|.|||..-.-++ .|.+ |+ ..+.|+.|
T Consensus 493 --------w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~s--Ri-~~f~F~n~~P~d~~ 561 (613)
T PHA02774 493 --------WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHS--RI-TVFEFPNPFPLDEN 561 (613)
T ss_pred --------HHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhh--hE-EEEECCCCCCcCCC
Confidence 1122334444443210 00 00 113457889985433333 2333 55 45555533
Q ss_pred -------CHHHHHHHHHHHhhcCCCCC
Q 014525 342 -------TEEARARILQIHSRKMNVHP 361 (423)
Q Consensus 342 -------~~~~r~~Il~~~~~~~~~~~ 361 (423)
+...=+.+++.+-..+.+..
T Consensus 562 G~P~f~ltd~~WKsFF~rlw~~LdL~d 588 (613)
T PHA02774 562 GNPVFELTDANWKSFFERLWSQLDLSD 588 (613)
T ss_pred CCEeeeeCchhHHHHHHHHHHHcCCCC
Confidence 22445667777777777763
No 315
>PRK05973 replicative DNA helicase; Provisional
Probab=97.81 E-value=0.00023 Score=65.98 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
|+.++..++|.|+||+|||+++-.++... |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 67777779999999999999998887654 6666666543
No 316
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.81 E-value=8.7e-05 Score=68.50 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=31.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---C------CcEEEEccch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---N------ATFLKLAGPQ 239 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~------~~~i~v~~~~ 239 (423)
|+++..-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 66677779999999999999999998754 2 5667776543
No 317
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=4.8e-05 Score=69.91 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++--+-|.||+|||||||.+.+|...
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999854
No 318
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.81 E-value=7.8e-05 Score=69.26 Aligned_cols=117 Identities=16% Similarity=0.252 Sum_probs=64.1
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchhhh--hh------------------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQLVQ--MF------------------------ 244 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l~~--~~------------------------ 244 (423)
|+++..-+.|+||||||||+++..++... +..+++++..+-.. .+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56666779999999999999999997543 25677777543110 00
Q ss_pred -hhchHHHHHHHHHHHHhC-CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q 014525 245 -IGDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 317 (423)
Q Consensus 245 -~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn 317 (423)
..+....+..+-...... .+.+|+||-+..+......+.. ...+-...+.+++..+..+....++.||.|..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRG-ELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 000011122233334445 7899999999987532111110 01222334445554444333334566666643
No 319
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.79 E-value=2e-05 Score=69.38 Aligned_cols=23 Identities=30% Similarity=0.689 Sum_probs=20.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 320
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.75 E-value=8e-05 Score=74.91 Aligned_cols=112 Identities=26% Similarity=0.390 Sum_probs=69.7
Q ss_pred ecCCCcccccccccccccC-CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHH
Q 014525 146 DTLPSEYDSRVKAMEVDEK-PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 224 (423)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~-~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~al 224 (423)
.++|..+..++...-.... ...+|++++......+.+...+.. |.+-+|++||+|+|||++.-++
T Consensus 213 StlP~~~GEkvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~ 278 (500)
T COG2804 213 STLPTFYGEKVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAA 278 (500)
T ss_pred ecCCCCCCcEEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHH
Confidence 3666655444332222222 245788998888888888887632 3334889999999999999999
Q ss_pred HHHhCCc---EEEEccc-hh-----hhh----hhhchHHHHHHHHHHHHhCCCeEEEECCchh
Q 014525 225 AAQTNAT---FLKLAGP-QL-----VQM----FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA 274 (423)
Q Consensus 225 a~~l~~~---~i~v~~~-~l-----~~~----~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~ 274 (423)
.++++.+ ++++.-+ ++ ..- -.|-+ ....+..+.+..|.||++.||-.
T Consensus 279 L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~glt---fa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 279 LSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLT---FARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred HHHhcCCCceEEEeeCCeeeecCCcceeecccccCCC---HHHHHHHHhccCCCeEEEeccCC
Confidence 9988543 3333211 11 111 11211 12345566688999999999954
No 321
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.75 E-value=0.00021 Score=64.50 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=50.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh-------hhhh---hh----------chHHHHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL-------VQMF---IG----------DGAKLVRDAFQLAK 260 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l-------~~~~---~g----------~~~~~~~~~~~~a~ 260 (423)
|+.++|.||+|+|||+++-.+|.++ +..+..+++..+ +..| .| +.........+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999999998876 333333333211 1111 11 12233444555565
Q ss_pred hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhh
Q 014525 261 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 301 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~ 301 (423)
.....+|+||=..... .+.+....+..+++.+
T Consensus 81 ~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~ 112 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP---------RDEELLEELKKLLEAL 112 (196)
T ss_dssp HTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhc
Confidence 6666899999875532 2334445555666554
No 322
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.74 E-value=0.0001 Score=69.87 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=43.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCC----------cEEEEc-cchhhhhhh-------hc------hHHHHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNA----------TFLKLA-GPQLVQMFI-------GD------GAKLVRDAFQLAK 260 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~----------~~i~v~-~~~l~~~~~-------g~------~~~~~~~~~~~a~ 260 (423)
.+++|.||||+|||++.++++..+.. .+..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999998732 222222 122221111 10 1111234666777
Q ss_pred hCCCeEEEECCch
Q 014525 261 EKSPCIIFIDEID 273 (423)
Q Consensus 261 ~~~~~vl~iDEid 273 (423)
...|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 323
>PRK04296 thymidine kinase; Provisional
Probab=97.73 E-value=0.0003 Score=63.24 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=40.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc--c--h----hhhhhhhch-----HHHHHHHHHHH--HhCCCeEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAG--P--Q----LVQMFIGDG-----AKLVRDAFQLA--KEKSPCII 267 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~--~--~----l~~~~~g~~-----~~~~~~~~~~a--~~~~~~vl 267 (423)
-.+++||+|+|||+++..++..+ +..++.+.. . . +.+. .|.. ......++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999998888766 445554532 1 1 1111 1110 00112233332 33467899
Q ss_pred EECCchhh
Q 014525 268 FIDEIDAI 275 (423)
Q Consensus 268 ~iDEid~l 275 (423)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999876
No 324
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.73 E-value=0.00026 Score=62.74 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCC-------------cEEEEccchhhhh----------hhhchHH--HHHHH
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNA-------------TFLKLAGPQLVQM----------FIGDGAK--LVRDA 255 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-------------~~i~v~~~~l~~~----------~~g~~~~--~~~~~ 255 (423)
+.++..+.|.||+|+|||+|.+++....+. ++.++.-.+++.. ....... ..+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 345567899999999999999999643221 1222111111111 1111111 12223
Q ss_pred HHHHHhCC--CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcc
Q 014525 256 FQLAKEKS--PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 333 (423)
Q Consensus 256 ~~~a~~~~--~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~ 333 (423)
+..+.... |.++++||--.-. +......+.+++..+.. .+ ..||.+|..++ +.+ ..+
T Consensus 98 laral~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~~---~g-~tvIivSH~~~-----~~~--~~d 156 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLID---LG-NTVILIEHNLD-----VLS--SAD 156 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHHh---CC-CEEEEEeCCHH-----HHH--hCC
Confidence 44444566 8999999986532 55556667777765421 22 34556666432 223 455
Q ss_pred eEEEcC
Q 014525 334 RKIEFP 339 (423)
Q Consensus 334 ~~i~~~ 339 (423)
.++.+.
T Consensus 157 ~i~~l~ 162 (176)
T cd03238 157 WIIDFG 162 (176)
T ss_pred EEEEEC
Confidence 666553
No 325
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.73 E-value=0.0003 Score=64.50 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred CCceEEcCCCCChhHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~ 226 (423)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999984
No 326
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.72 E-value=0.00017 Score=65.30 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
...+.++|+||+|+|||++++.++..
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34457899999999999999999853
No 327
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.72 E-value=8.5e-05 Score=67.17 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=25.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
+.+++.||||||||++++.+...+ +..++.+..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 458889999999999999988765 4556555543
No 328
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.72 E-value=0.00036 Score=66.14 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=57.1
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEc-cchhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLA-GPQLVQ 242 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~-~~~l~~ 242 (423)
.++++++-.....+.+.+.+. .+.+.++|.||+|+|||++++++...+. ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 346666545555555555442 1334589999999999999999987763 2344442 222211
Q ss_pred h-----hhh-chHHHHHHHHHHHHhCCCeEEEECCchh
Q 014525 243 M-----FIG-DGAKLVRDAFQLAKEKSPCIIFIDEIDA 274 (423)
Q Consensus 243 ~-----~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~ 274 (423)
. .+. ........+...+.+..|.+|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0 011 1111234566667788999999999954
No 329
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.72 E-value=0.00017 Score=67.25 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=31.1
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~ 237 (423)
|+.++.-++|.|+||+|||+++..++... +.+++++++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 77777789999999999999998887654 667777764
No 330
>PRK10536 hypothetical protein; Provisional
Probab=97.71 E-value=0.00037 Score=64.99 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=32.4
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+..|.+.......+...+.. ..-++++||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344455666666666665421 236899999999999999999885
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.70 E-value=0.00036 Score=66.00 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=28.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|++++..++++||||||||+++-.++... +.++++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 56677779999999999999999876643 445555553
No 332
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00039 Score=69.20 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=67.2
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC-------Cc--EEEEccchh-----hhhh---------hhchHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN-------AT--FLKLAGPQL-----VQMF---------IGDGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~-------~~--~i~v~~~~l-----~~~~---------~g~~~~~~~~~~~~a 259 (423)
.|+.++|+||+|+|||+++..+|..+. .. ++.+++-.. +..| .......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356799999999999999999998652 23 344443211 1111 111122222222222
Q ss_pred HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-CCeEEEEEcCCCCCCChhhhcCCCc-ceEEE
Q 014525 260 KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRL-DRKIE 337 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~v~vI~ttn~~~~l~~~l~~~~Rf-~~~i~ 337 (423)
....+|+||.+..... +......+..+++. .... ..++|+.+|.....+...+.+-..+ ...+-
T Consensus 253 --~~~DlVLIDTaGr~~~---------~~~~l~el~~~l~~---~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------DFMKLAEMKELLNA---CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------CHHHHHHHHHHHHh---cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 4568999999987531 22222233444443 2222 3556666666555555444321111 12444
Q ss_pred cCCCCHHHHH
Q 014525 338 FPHPTEEARA 347 (423)
Q Consensus 338 ~~~p~~~~r~ 347 (423)
|...|...+.
T Consensus 319 ~TKlDet~~~ 328 (388)
T PRK12723 319 FTKLDETTCV 328 (388)
T ss_pred EEeccCCCcc
Confidence 5555654433
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.69 E-value=0.00025 Score=62.12 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=61.8
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccchh--------hhhhhhc----h-HHHHHHHHHHHHhCCCe
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQL--------VQMFIGD----G-AKLVRDAFQLAKEKSPC 265 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~l--------~~~~~g~----~-~~~~~~~~~~a~~~~~~ 265 (423)
+.++..+.|.||+|+|||+|.+.++.... .--+.++...+ ....++. + ....+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 35666799999999999999999998752 11223332211 1111111 1 11223345556667889
Q ss_pred EEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 266 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 266 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
++++||--.- -+......+.+++..+.. . +..+|.+|..
T Consensus 103 illlDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~ 141 (163)
T cd03216 103 LLILDEPTAA----------LTPAEVERLFKVIRRLRA---Q-GVAVIFISHR 141 (163)
T ss_pred EEEEECCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCC
Confidence 9999998653 255666677777766531 2 2345555553
No 334
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.69 E-value=6.3e-05 Score=74.11 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=45.8
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC----CcEEEEc-cchhhh---------hhhhchHHHHHHHHHHHHhCCCeEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLA-GPQLVQ---------MFIGDGAKLVRDAFQLAKEKSPCIIF 268 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~-~~~l~~---------~~~g~~~~~~~~~~~~a~~~~~~vl~ 268 (423)
+.+.++|+||+|+|||++++++.+.+. ..++.+. ..++.. ..+|.........+..+.+..|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 345689999999999999999998764 2344332 122211 01222112234556666778899999
Q ss_pred ECCch
Q 014525 269 IDEID 273 (423)
Q Consensus 269 iDEid 273 (423)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99994
No 335
>PRK06762 hypothetical protein; Provisional
Probab=97.68 E-value=0.00014 Score=63.74 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
.-++|+|+||+|||++|+.+++.++..++.++...+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 46899999999999999999999976677777665544
No 336
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.67 E-value=0.0003 Score=62.03 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=54.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhh-h----------------chHHHHHHHHHHHHhCCCeEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI-G----------------DGAKLVRDAFQLAKEKSPCIIF 268 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~-g----------------~~~~~~~~~~~~a~~~~~~vl~ 268 (423)
.+++.||||+|||++|..++..++.+++++........-. . +....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999887777776543221100 0 0011122222221 13357899
Q ss_pred ECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC
Q 014525 269 IDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 303 (423)
Q Consensus 269 iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~ 303 (423)
||-+..+..+...... .......+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc
Confidence 9999988654321110 02233445556655543
No 337
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.67 E-value=0.00041 Score=57.68 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+++++||+|+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999988887765
No 338
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00012 Score=63.84 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=29.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.+++|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998665
No 339
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.64 E-value=0.00067 Score=62.60 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
|++++..+++.|+||+|||+++..++... +.++++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 66677779999999999999998887643 5666666654
No 340
>PRK14974 cell division protein FtsY; Provisional
Probab=97.64 E-value=0.0003 Score=68.71 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=45.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh-------hhh---hh----------chHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF---IG----------DGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~-------~~~---~g----------~~~~~~~~~~~~a 259 (423)
.|..++|+||||+|||+++..+|..+ +..+..+++..+. ..+ .| .....+......+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998876 4455555544221 111 01 1112223334444
Q ss_pred HhCCCeEEEECCchhhh
Q 014525 260 KEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l~ 276 (423)
+.....+|+||....+.
T Consensus 219 ~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH 235 (336)
T ss_pred HhCCCCEEEEECCCccC
Confidence 55566799999997753
No 341
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.63 E-value=0.00011 Score=66.06 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=58.6
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh-hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF-IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 284 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~ 284 (423)
-++|+||+|||||.+|-++|+.++.|++..+.-...... +|...... ... ... .=++|||-..--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~----~el-~~~-~RiyL~~r~l~~-------- 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTP----SEL-KGT-RRIYLDDRPLSD-------- 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---S----GGG-TT--EEEES----GGG--------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCH----HHH-ccc-ceeeeccccccC--------
Confidence 368999999999999999999999999999876554432 22221111 011 111 238888654321
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcC---CCcc-eEEEcCCCCHHHHHHHHHHHhhcC
Q 014525 285 SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRS---GRLD-RKIEFPHPTEEARARILQIHSRKM 357 (423)
Q Consensus 285 ~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~---~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~ 357 (423)
+.-........++..+......+.+++=+-+. +-+..-..++ ..|. .+..++.|+.+.-..-.+...+++
T Consensus 69 -G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 69 -GIINAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp --S--HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred -CCcCHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 11122223344455555555544444434332 1111111110 1232 355778888876655555444443
No 342
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0049 Score=60.46 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHhCCCCcHHHHHHHHH
Q 014525 335 KIEFPHPTEEARARILQIHSRKMNV----HPDVNFEELARSTDDFNGAQLKAVCV 385 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~~~~~~~~----~~~~~l~~la~~~~g~s~~dl~~l~~ 385 (423)
.|+++.++.+|-..++..+++.--+ ..+..+..+--.+ +.+|+.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 5788899999999999888764222 2233456665555 568888877774
No 343
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00046 Score=68.11 Aligned_cols=96 Identities=22% Similarity=0.208 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh-------hhh-
Q 014525 176 EKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF- 244 (423)
Q Consensus 176 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~-------~~~- 244 (423)
...+..+.+.+...+..+..+ ...++.++|.||+|+|||+++..||..+ +..+..+++..+. ..|
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 455555665554433322111 1235679999999999999999999877 3344445543221 111
Q ss_pred --------hhchHHHHHHHHHHHHh-CCCeEEEECCchhh
Q 014525 245 --------IGDGAKLVRDAFQLAKE-KSPCIIFIDEIDAI 275 (423)
Q Consensus 245 --------~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l 275 (423)
....+..+......+.. ....+||||-....
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 11233334444444443 24678999977653
No 344
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.62 E-value=0.0003 Score=72.91 Aligned_cols=105 Identities=30% Similarity=0.395 Sum_probs=64.7
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh-------CCc----EEEEcc------------------------chhhhh-
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT-------NAT----FLKLAG------------------------PQLVQM- 243 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l-------~~~----~i~v~~------------------------~~l~~~- 243 (423)
.++++.++|+.||+|||||+|.|+||.-- ..| .+.+.- .++..-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 45677889999999999999999999843 111 122210 000000
Q ss_pred -------hhh------------chHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 014525 244 -------FIG------------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF 304 (423)
Q Consensus 244 -------~~g------------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~ 304 (423)
+.+ ......+-.|..+.-++|.++||||.-.-. +++.+..+++++..-
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL----------De~~e~~l~q~l~~~--- 561 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL----------DEETEDRLYQLLKEE--- 561 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc----------ChHHHHHHHHHHHhh---
Confidence 000 011112345666777899999999986643 566777888888651
Q ss_pred CCCCCeEEEEEcCCC
Q 014525 305 SSDDRIKVIAATNRA 319 (423)
Q Consensus 305 ~~~~~v~vI~ttn~~ 319 (423)
-.++.||..+.++
T Consensus 562 --lp~~tvISV~Hr~ 574 (604)
T COG4178 562 --LPDATVISVGHRP 574 (604)
T ss_pred --CCCCEEEEeccch
Confidence 1345677777654
No 345
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00034 Score=68.52 Aligned_cols=100 Identities=23% Similarity=0.390 Sum_probs=71.2
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh--CCcEEEEccchhhhhh------hh--------chHHHHHHHHHHHHhCC
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT--NATFLKLAGPQLVQMF------IG--------DGAKLVRDAFQLAKEKS 263 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l--~~~~i~v~~~~l~~~~------~g--------~~~~~~~~~~~~a~~~~ 263 (423)
|+-|..-+|+-|.||.|||||.-.++..+ ..++++|++.+-.... .| ..+-.+..+...+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 55666679999999999999998888876 3478999887654331 11 13344567788888899
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
|.+++||-|+.+.....++.++.-..+...-.+++.
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999999999999877766655544444444444443
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.62 E-value=0.00032 Score=61.57 Aligned_cols=102 Identities=29% Similarity=0.395 Sum_probs=59.0
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhC---C--------cEEEEccc-hhh-----hh----hhhchHH--HHHHHHH
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTN---A--------TFLKLAGP-QLV-----QM----FIGDGAK--LVRDAFQ 257 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~--------~~i~v~~~-~l~-----~~----~~g~~~~--~~~~~~~ 257 (423)
+.++..+.|.||+|+|||+|++.++..+. . .+.++... .+. +. ....-.+ ..+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 34666799999999999999999998752 1 11111110 010 00 0111111 1223344
Q ss_pred HHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 258 LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 258 ~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.+-...|.++++||--.-. +......+.+++..+ + ..+|.+|..+
T Consensus 104 ral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~------~-~tiiivsh~~ 148 (166)
T cd03223 104 RLLLHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL------G-ITVISVGHRP 148 (166)
T ss_pred HHHHcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh------C-CEEEEEeCCh
Confidence 5556788999999986532 556666777777654 1 2356666644
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.62 E-value=0.00039 Score=59.55 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=58.1
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccch---hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQ---LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~---l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l 275 (423)
+.++..+.|.||+|+|||+|++.++..... --+.++... ++..+.+. ...+-.+..+-...|.++++||-..-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G--~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGG--EKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHH--HHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 345667899999999999999999987621 112222110 00001111 11222345555678899999998653
Q ss_pred hccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 276 GTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 276 ~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
. +......+.+++..+. . .+|.+|+..
T Consensus 101 L----------D~~~~~~l~~~l~~~~------~-til~~th~~ 127 (144)
T cd03221 101 L----------DLESIEALEEALKEYP------G-TVILVSHDR 127 (144)
T ss_pred C----------CHHHHHHHHHHHHHcC------C-EEEEEECCH
Confidence 2 4455566666666541 2 456666643
No 348
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.62 E-value=0.00029 Score=75.42 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=50.6
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHH---hCCcEEEEccchhhh-hh---------------hhchHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQ---TNATFLKLAGPQLVQ-MF---------------IGDGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~---l~~~~i~v~~~~l~~-~~---------------~g~~~~~~~~~~~~a~ 260 (423)
|+.+.+.++++||||||||+|+..++.. .+..+++++..+-+. .+ ....+..+..+-..++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5666777999999999999999665443 356677777554222 00 0111222222333345
Q ss_pred hCCCeEEEECCchhhhc
Q 014525 261 EKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~ 277 (423)
...+.+|+||-+..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999986
No 349
>PRK13947 shikimate kinase; Provisional
Probab=97.62 E-value=5.2e-05 Score=66.75 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=28.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
+++|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999987655
No 350
>PRK03839 putative kinase; Provisional
Probab=97.61 E-value=4.9e-05 Score=67.66 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.6
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999998886544
No 351
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.61 E-value=0.0004 Score=61.17 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=58.7
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh-----------------hhchHHHHHHHHHHHHhCCCeEEEE
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF-----------------IGDGAKLVRDAFQLAKEKSPCIIFI 269 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~-----------------~g~~~~~~~~~~~~a~~~~~~vl~i 269 (423)
+|++||+|+|||++|..++...+.+.+++....-.+.- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877777777544322110 011222222322211 14679999
Q ss_pred CCchhhhccCCCCCCCC-cHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q 014525 270 DEIDAIGTKRFDSEVSG-DREVQRTMLELLNQLDGFSSDDRIKVIAATN 317 (423)
Q Consensus 270 DEid~l~~~r~~~~~~~-~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn 317 (423)
|-+..+..+-...+... ...+...+..++..+... +.-+|.++|
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~----~~~~viVsn 124 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNK----PGTLILVSN 124 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcC----CCcEEEEEC
Confidence 99998876543221110 122334455566655432 223455555
No 352
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00038 Score=62.62 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=21.5
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
.++..+.|.||+|+|||||.|.+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3455699999999999999999975
No 353
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.61 E-value=0.00026 Score=68.64 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=63.7
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHH---------hCCcEEEEccchhh--hh---h---hh----------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQ---------TNATFLKLAGPQLV--QM---F---IG---------------- 246 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~---------l~~~~i~v~~~~l~--~~---~---~g---------------- 246 (423)
|+.+...+.|+||||+|||.++..+|-. .+...++++..+-+ +. . .|
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 5666667899999999999999887742 13567777754411 00 0 00
Q ss_pred chHH---HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 247 DGAK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 247 ~~~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
..+. .+..+........+.+|+||-+-.+......+. +...+-+..+.+++..+..+....++.||.|.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~-g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGR-GELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCc-cchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0111 112222233445688999999998875432221 11122233455555444444344566666653
No 354
>PRK04328 hypothetical protein; Provisional
Probab=97.60 E-value=0.00082 Score=63.16 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=28.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHH-h--CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQ-T--NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~-l--~~~~i~v~~ 237 (423)
|++++..+|++||||||||+++..++.. + +.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 6667778999999999999999876554 2 455555553
No 355
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.60 E-value=0.00043 Score=68.50 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc------EEEEccc------hhhhhh--------hhchHHH-H---HHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT------FLKLAGP------QLVQMF--------IGDGAKL-V---RDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~------~i~v~~~------~l~~~~--------~g~~~~~-~---~~~~~~ 258 (423)
++..++|.||||+|||++++.+++..... ++.+... ++.... .+..... . ..+.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 45569999999999999999999976322 2222211 111111 1111111 1 112222
Q ss_pred H----HhCCCeEEEECCchhhhccCCC-----C---CCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 259 A----KEKSPCIIFIDEIDAIGTKRFD-----S---EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 259 a----~~~~~~vl~iDEid~l~~~r~~-----~---~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
+ ......||||||++++...... + ..+-++.+...+-.++.........+.+.+|+|.
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~Tv 316 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 316 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCCCCcChhhhcccHHHHhhcCCCCCCcchhheEEE
Confidence 2 2344579999999988643211 0 0223455556666777655554445555556554
No 356
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.59 E-value=6.3e-05 Score=64.84 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=27.6
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
+++|+||||+|||++|+.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998877544
No 357
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.59 E-value=0.00037 Score=66.27 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=29.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~ 237 (423)
|+.+...++|.||||+|||+++..++..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 55666779999999999999999887764 556666654
No 358
>PRK00625 shikimate kinase; Provisional
Probab=97.59 E-value=5.7e-05 Score=66.82 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=28.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.++|+|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999887665
No 359
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.59 E-value=5.8e-05 Score=63.56 Aligned_cols=32 Identities=31% Similarity=0.648 Sum_probs=28.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.++|++|-||||||+++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 37999999999999999999999998876543
No 360
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.59 E-value=0.00052 Score=62.29 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.2
Q ss_pred CCCCceEEcCCCCChhHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
++..++|+||.|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 445699999999999999999994
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00096 Score=66.58 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=41.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhh-------hh---hh---chHHHHHHHHHHHHhCCCe
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQ-------MF---IG---DGAKLVRDAFQLAKEKSPC 265 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~-------~~---~g---~~~~~~~~~~~~a~~~~~~ 265 (423)
++..++|.||+|+|||+++..+|... +..+..+++..+-. .| .| ........+...+....+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34568999999999999999999754 34454455443211 11 01 0111123344444445667
Q ss_pred EEEECCc
Q 014525 266 IIFIDEI 272 (423)
Q Consensus 266 vl~iDEi 272 (423)
+|+||=.
T Consensus 302 ~VLIDTa 308 (432)
T PRK12724 302 LILIDTA 308 (432)
T ss_pred EEEEeCC
Confidence 8888854
No 362
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.58 E-value=0.00057 Score=67.70 Aligned_cols=70 Identities=24% Similarity=0.376 Sum_probs=46.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC-----CcEEEEccc-hhh-----------hhhhhchHHHHHHHHHHHHhCCCeEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAGP-QLV-----------QMFIGDGAKLVRDAFQLAKEKSPCII 267 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~-----~~~i~v~~~-~l~-----------~~~~g~~~~~~~~~~~~a~~~~~~vl 267 (423)
+.+|++||+|+|||++++++.++.. ..++.+.-+ ++. ...+|............+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988762 345555322 221 11122222233455666777899999
Q ss_pred EECCchh
Q 014525 268 FIDEIDA 274 (423)
Q Consensus 268 ~iDEid~ 274 (423)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999953
No 363
>PRK13948 shikimate kinase; Provisional
Probab=97.58 E-value=0.00013 Score=64.97 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=34.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIG 246 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g 246 (423)
+++..++|.|++|+|||++++.+|+.++.+|+..+ .+.....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 35678999999999999999999999999998555 44444433
No 364
>PRK04040 adenylate kinase; Provisional
Probab=97.57 E-value=0.00048 Score=61.81 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=27.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh--CCcEEEEccchh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT--NATFLKLAGPQL 240 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l--~~~~i~v~~~~l 240 (423)
+..++++|+||||||++++.+++.+ +..+ ++..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE--EecchH
Confidence 4568999999999999999999999 4444 444443
No 365
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.57 E-value=0.00068 Score=65.89 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=28.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
++..++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45678999999999999999999877 4445555543
No 366
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.56 E-value=6.6e-05 Score=66.55 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=30.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
+-++|.|+||+|||++|+.++..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 468999999999999999999999888776665544
No 367
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.56 E-value=0.00064 Score=61.61 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.5
Q ss_pred CCceEEcCCCCChhHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACA 225 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala 225 (423)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 368
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.56 E-value=0.00012 Score=69.72 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=56.3
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEc-cchhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLA-GPQLVQ 242 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~-~~~l~~ 242 (423)
.++++++-.....+.+.+.+..... ..+++++.||+|+|||++++++...+. ..++.+. ..++.-
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred ccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 3556665444444555555443221 246799999999999999999999873 3444443 222211
Q ss_pred h------h-hhchHHHHHHHHHHHHhCCCeEEEECCchh
Q 014525 243 M------F-IGDGAKLVRDAFQLAKEKSPCIIFIDEIDA 274 (423)
Q Consensus 243 ~------~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~ 274 (423)
. + ..........++..+.+..|.+|++.|+-.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1 0 011122344667777888999999999964
No 369
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.56 E-value=0.00082 Score=74.63 Aligned_cols=181 Identities=14% Similarity=0.064 Sum_probs=101.8
Q ss_pred CCCCCCceEEcCCCCChhHHH-HHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHH---HHHHh------CC-----Ce
Q 014525 201 VRPPKGVLLYGPPGTGKTLMA-RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAF---QLAKE------KS-----PC 265 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la-~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~---~~a~~------~~-----~~ 265 (423)
+...++++++||||+|||++. -++-.++-..++.+|-+.-. .++..+..+- ..... .+ -.
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 346689999999999999965 56666666666666643211 1111111111 11111 01 15
Q ss_pred EEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC--------CCCeEEEEEcCCCCCC-----ChhhhcCCCc
Q 014525 266 IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--------DDRIKVIAATNRADIL-----DPALMRSGRL 332 (423)
Q Consensus 266 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~--------~~~v~vI~ttn~~~~l-----~~~l~~~~Rf 332 (423)
|||.|||. |...+ ... .+.+.--+.+++.. +|+.+ -.++++.+++|++... ...++| -
T Consensus 1566 VLFcDeIn-Lp~~~-~y~---~~~vI~FlR~l~e~-QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r---~ 1636 (3164)
T COG5245 1566 VLFCDEIN-LPYGF-EYY---PPTVIVFLRPLVER-QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR---K 1636 (3164)
T ss_pred EEEeeccC-Ccccc-ccC---CCceEEeeHHHHHh-cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc---C
Confidence 89999998 43222 111 11221122234432 33322 2378899999987653 345553 3
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhhcCCCCC-C------------CC--------HHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 333 DRKIEFPHPTEEARARILQIHSRKMNVHP-D------------VN--------FEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 333 ~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~------------~~--------l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
...+++..|.......|...++.....-. + +. .........||+|+++-..++....+|
T Consensus 1637 ~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ya 1716 (3164)
T COG5245 1637 PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYA 1716 (3164)
T ss_pred ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHH
Confidence 46778889999999998887775432221 0 00 111112335899999999988666655
Q ss_pred HHhC
Q 014525 392 LRRD 395 (423)
Q Consensus 392 ~~~~ 395 (423)
-.+-
T Consensus 1717 eT~~ 1720 (3164)
T COG5245 1717 ETRI 1720 (3164)
T ss_pred hcCC
Confidence 4443
No 370
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.56 E-value=0.00087 Score=60.57 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATF 232 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~ 232 (423)
+.-+++.|+||+|||++|+.++..++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999988754
No 371
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.54 E-value=0.00043 Score=67.77 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchh------hhh--hhhc---------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL------VQM--FIGD--------------- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l------~~~--~~g~--------------- 247 (423)
|+.......|+||||||||.|+..+|-.. +..+++++...- ... .+|.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 56666668899999999999999886322 246677775431 000 0000
Q ss_pred -hH---HHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 248 -GA---KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 248 -~~---~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
.+ ..+..+...+...++.+|+||-|-.+......+.. ...+-+..+.+++..+..+....++.||.|.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg-~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRG-ELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCcc-chHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 11122222334566899999999988654322211 1123344455555544433333456566653
No 372
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00036 Score=68.91 Aligned_cols=109 Identities=23% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----C-CcEEEEccchh-------hhh---hhhc------hHHHHHHHHHHHHh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----N-ATFLKLAGPQL-------VQM---FIGD------GAKLVRDAFQLAKE 261 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~-~~~i~v~~~~l-------~~~---~~g~------~~~~~~~~~~~a~~ 261 (423)
.+..++|+||+|+|||+++..||..+ + ..+..+.+..+ +.. +.|. ....+..... +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--EL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--Hh
Confidence 45679999999999999999999864 2 23444444332 111 1111 1111112222 22
Q ss_pred CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCCCCChhh
Q 014525 262 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNRADILDPAL 326 (423)
Q Consensus 262 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~v~vI~ttn~~~~l~~~l 326 (423)
..+.+|+||...... .+. .+.+.+..+..... ...++|+.+|+..+.+...+
T Consensus 214 ~~~DlVLIDTaG~~~---------~d~----~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ---------RDR----TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred cCCCEEEEcCCCCCc---------ccH----HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 445799999986532 112 33344444433332 23466677777666655443
No 373
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.52 E-value=0.00018 Score=69.36 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=47.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC-----CcEEEEcc-chhhh-------hhhhchHHHHHHHHHHHHhCCCeEEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAG-PQLVQ-------MFIGDGAKLVRDAFQLAKEKSPCIIFI 269 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~-----~~~i~v~~-~~l~~-------~~~g~~~~~~~~~~~~a~~~~~~vl~i 269 (423)
..++++++||+|+|||++++++++.+. ..++.+.- .++.- ...+........++..+.+..|..|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 346899999999999999999998862 33444422 12210 001111224556778888899999999
Q ss_pred CCch
Q 014525 270 DEID 273 (423)
Q Consensus 270 DEid 273 (423)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9994
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.52 E-value=0.0019 Score=61.42 Aligned_cols=74 Identities=28% Similarity=0.408 Sum_probs=45.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh-------hhhhh---h----------chHHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL-------VQMFI---G----------DGAKLVRDAFQL 258 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l-------~~~~~---g----------~~~~~~~~~~~~ 258 (423)
.+++.++|+||+|+|||+++..+|..+ +..+..+++..+ +..|. | +........+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998876 445555555422 11110 0 111222233344
Q ss_pred HHhCCCeEEEECCchhh
Q 014525 259 AKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 259 a~~~~~~vl~iDEid~l 275 (423)
+....+.+|+||=...+
T Consensus 150 ~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHCCCCEEEEeCCCCC
Confidence 44566788999877654
No 375
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.51 E-value=8.3e-05 Score=66.24 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.4
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
++++||||+|||++|+.+|+.++. ..+++++++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHHH
Confidence 689999999999999999999985 556666665543
No 376
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00051 Score=61.19 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=21.2
Q ss_pred ceEEcCCCCChhHHHHHHHHHh
Q 014525 207 VLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l 228 (423)
++|+|+||+|||++|+-+|+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999988
No 377
>PRK13949 shikimate kinase; Provisional
Probab=97.50 E-value=8.1e-05 Score=65.66 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=28.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.++|.||||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998887655
No 378
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.50 E-value=0.00084 Score=69.31 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=54.6
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh------hh----------------------ch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IG----------------------DG 248 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~------~g----------------------~~ 248 (423)
|+.++..+|+.||||+|||+|+-.++... +-+.+++...+-.+.+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67777789999999999999998887755 4566666544322111 00 11
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 249 AKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
+..+..+.+.+....|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3455566777777888999999999874
No 379
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0011 Score=60.94 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=90.8
Q ss_pred CCceEEcCCC-CChhHHHHHHHHHhCC---------cEEEEccchhh---hhhhhchHHHHHHHHHHHH----hCCCeEE
Q 014525 205 KGVLLYGPPG-TGKTLMARACAAQTNA---------TFLKLAGPQLV---QMFIGDGAKLVRDAFQLAK----EKSPCII 267 (423)
Q Consensus 205 ~~vLl~Gp~G-tGKT~la~ala~~l~~---------~~i~v~~~~l~---~~~~g~~~~~~~~~~~~a~----~~~~~vl 267 (423)
...||.|..+ +||..++..++..+.+ -+..+....-. +..+ .-..++++...+. .....|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 5799999998 9999999988887632 23333211100 0011 2233444444443 3456799
Q ss_pred EECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHH
Q 014525 268 FIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARA 347 (423)
Q Consensus 268 ~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 347 (423)
+|+++|.+. .+..+.|+..|++ +..++++|..|..+..+.|.+++ |+ ..+.|+.|....-.
T Consensus 94 II~~ae~mt-----------~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~ 154 (263)
T PRK06581 94 IIYSAELMN-----------LNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYN 154 (263)
T ss_pred EEechHHhC-----------HHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHH
Confidence 999999983 4556677777664 45677888888889999999999 87 78899999998888
Q ss_pred HHHHHHhhcCC
Q 014525 348 RILQIHSRKMN 358 (423)
Q Consensus 348 ~Il~~~~~~~~ 358 (423)
+....++..+.
T Consensus 155 e~~~~~~~p~~ 165 (263)
T PRK06581 155 ELYSQFIQPIA 165 (263)
T ss_pred HHHHHhccccc
Confidence 87777765444
No 380
>PTZ00202 tuzin; Provisional
Probab=97.49 E-value=0.0074 Score=60.34 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=47.9
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccc
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 238 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~ 238 (423)
.-.+++|.+.....+...+.. .....++-+.|+||+|||||++++.+...++.+.+.+|..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 345788999999999886632 1223445789999999999999999999998777777765
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.0008 Score=58.38 Aligned_cols=104 Identities=27% Similarity=0.325 Sum_probs=59.9
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccchhhh-------hhhh----chHH-HHHHHHHHHHhCCCeEE
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQ-------MFIG----DGAK-LVRDAFQLAKEKSPCII 267 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~l~~-------~~~g----~~~~-~~~~~~~~a~~~~~~vl 267 (423)
.++..+.|.||+|+|||+|+++++..+.. --+.++...... ..++ .+.+ ..+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 45567999999999999999999987632 123344322110 1111 1111 12223444555678999
Q ss_pred EECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 268 FIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 268 ~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
++||...-. +......+.+++..+.. . +..+|.+|...
T Consensus 103 ilDEp~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~ 140 (157)
T cd00267 103 LLDEPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDP 140 (157)
T ss_pred EEeCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCH
Confidence 999987632 44555566666665432 1 23456666643
No 382
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.48 E-value=0.0018 Score=57.27 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=59.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccchh--------hhh--h-------h----h---ch-HHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQL--------VQM--F-------I----G---DG-AKLVRD 254 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~l--------~~~--~-------~----g---~~-~~~~~~ 254 (423)
.++..+.|.||+|+|||+|++.++..... --+.++...+ ... | . . -+ ....+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 45566899999999999999999986521 1122222111 000 0 0 0 01 111233
Q ss_pred HHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 255 AFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 255 ~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
.+..+-...|.++++||--.-. +......+.+++..+.. . +..+|.+|...
T Consensus 106 ~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~ 156 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALKA---A-GATRIVIAHRP 156 (173)
T ss_pred HHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHHh---C-CCEEEEEeCCH
Confidence 4555556788999999986532 55566677777766532 2 23455555533
No 383
>PRK14532 adenylate kinase; Provisional
Probab=97.48 E-value=8.8e-05 Score=66.46 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=30.0
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
.++|.||||+|||++|+.+|+.++.++ +++.+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHHH
Confidence 489999999999999999999998655 5565665553
No 384
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.48 E-value=0.00067 Score=66.62 Aligned_cols=113 Identities=15% Similarity=0.251 Sum_probs=62.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCC-----cEEE--Ecc-----chhhhhh---hh-----ch-HHHHH---HHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNA-----TFLK--LAG-----PQLVQMF---IG-----DG-AKLVR---DAFQLA 259 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~-----~~i~--v~~-----~~l~~~~---~g-----~~-~~~~~---~~~~~a 259 (423)
+...+|+||||||||++++.+++.+.. .++. |.- .+|.... +. .. ...+. .+.+.+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999997732 2222 221 1222221 00 11 11111 111222
Q ss_pred ----HhCCCeEEEECCchhhhccCCC-----C---CCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 260 ----KEKSPCIIFIDEIDAIGTKRFD-----S---EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 260 ----~~~~~~vl~iDEid~l~~~r~~-----~---~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
......+|++|++.+++..... + ..+-++.+...+-.|+.........+.+.+|+|.
T Consensus 213 e~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~Tv 281 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLTIIATA 281 (380)
T ss_pred HHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEEE
Confidence 2345678999999987643211 0 1234566677777788765555444555555553
No 385
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.48 E-value=0.0012 Score=59.03 Aligned_cols=68 Identities=15% Similarity=0.281 Sum_probs=39.6
Q ss_pred ceEEcCCCCChhHHHHHHHHH-----hCCc--------------EEEEccchhhhhhhhchHHHHHHHHHHHHh-CCCeE
Q 014525 207 VLLYGPPGTGKTLMARACAAQ-----TNAT--------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE-KSPCI 266 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~-----l~~~--------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~-~~~~v 266 (423)
++|+||.|+|||++++.++-. .|.+ +..+...+......+.....+.++...+.. ..|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 689999999999999999832 2221 122222222222222333334333333332 36899
Q ss_pred EEECCchh
Q 014525 267 IFIDEIDA 274 (423)
Q Consensus 267 l~iDEid~ 274 (423)
+++||+-.
T Consensus 82 lllDEp~~ 89 (185)
T smart00534 82 VLLDELGR 89 (185)
T ss_pred EEEecCCC
Confidence 99999966
No 386
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.48 E-value=0.0004 Score=67.68 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=31.0
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQ 239 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~ 239 (423)
|++.+..++|+||||+|||.++-.+|... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56666678999999999999999998653 33677777644
No 387
>PLN02200 adenylate kinase family protein
Probab=97.47 E-value=0.00023 Score=66.23 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=33.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+.|..+++.||||+|||++|+.+|+.++.+ .+++++++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 345568999999999999999999998854 57777776543
No 388
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.46 E-value=0.0017 Score=60.11 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=29.2
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|+.++..++++||||+|||+++..++... +.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67777789999999999999999876532 445555554
No 389
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.46 E-value=0.00053 Score=61.05 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=60.3
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccchhh---------------------------hhhhhchHHH
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLV---------------------------QMFIGDGAKL 251 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~l~---------------------------~~~~g~~~~~ 251 (423)
+.++..+.|.||+|+|||+|++.++.... .--+.++...+. ......-.+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 34666799999999999999999998652 112233322110 0001111111
Q ss_pred --HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q 014525 252 --VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 320 (423)
Q Consensus 252 --~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~ 320 (423)
.+-.+..+-...|.++++||--.-. +......+.+++..+.. ..+..+|.+|..++
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~ 159 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLAR---ERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 1223344445778999999986532 45556677777766432 11234566666443
No 390
>PRK14531 adenylate kinase; Provisional
Probab=97.46 E-value=0.00011 Score=65.56 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=29.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
..++++||||+|||++++.+|..++.+++ ++.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 35999999999999999999999987654 4444443
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.45 E-value=0.00011 Score=63.29 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=24.8
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
++|+|+||+|||++|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 392
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.001 Score=60.48 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
+++.++|+||+|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999874
No 393
>PRK06217 hypothetical protein; Validated
Probab=97.45 E-value=0.00012 Score=65.47 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=27.7
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.|+|.|+||+|||+++++|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876554
No 394
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00015 Score=64.33 Aligned_cols=34 Identities=29% Similarity=0.621 Sum_probs=27.0
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.++|.||||+||||+|+.|++.++ +.+++...+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHh
Confidence 489999999999999999999954 4555544443
No 395
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.44 E-value=0.0014 Score=58.19 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=60.9
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccchhhh------h---h----------------hhchH--HH
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQ------M---F----------------IGDGA--KL 251 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~l~~------~---~----------------~g~~~--~~ 251 (423)
+.++..+.|.||+|+|||+|++.++.... .--+.++...+.. . | ...-. ..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 35666799999999999999999998752 1112233221100 0 0 00111 11
Q ss_pred HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q 014525 252 VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 320 (423)
Q Consensus 252 ~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~ 320 (423)
.+-.+..+-...|.++++||--.-. +......+.+++..+. .+ ..+|.+|..++
T Consensus 105 qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~~-~tii~~sh~~~ 158 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----KD-KTLIWITHHLT 158 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----CC-CEEEEEecCHH
Confidence 2233445556788999999986532 5556667777777652 12 34555555443
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.43 E-value=0.00012 Score=63.95 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=26.3
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999986654 44443
No 397
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.43 E-value=0.00089 Score=60.07 Aligned_cols=127 Identities=19% Similarity=0.280 Sum_probs=75.4
Q ss_pred ccChhHHhhhC--CCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc----hhhhh-----------------
Q 014525 190 MTHKERFQKLG--VRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP----QLVQM----------------- 243 (423)
Q Consensus 190 l~~~~~~~~~g--~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~----~l~~~----------------- 243 (423)
..+.++-.++| ++.+.-+++.|+.|||||.|.+.++.-+ +....+++.. +++..
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 33444445553 4444458999999999999999887643 2233333211 11100
Q ss_pred ------------hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 244 ------------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 244 ------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
......+.+..+.+..+.....|++||-+..+.... + ...+++++..++.+...+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~---~~~vl~fm~~~r~l~d~gKv- 160 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------S---EDAVLNFMTFLRKLSDLGKV- 160 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------c---HHHHHHHHHHHHHHHhCCCE-
Confidence 012234455666777777778999999998876431 1 22455566655555555555
Q ss_pred EEEEcCCCCCCChhhhc
Q 014525 312 VIAATNRADILDPALMR 328 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~ 328 (423)
||.|.| |..++.+.+.
T Consensus 161 IilTvh-p~~l~e~~~~ 176 (235)
T COG2874 161 IILTVH-PSALDEDVLT 176 (235)
T ss_pred EEEEeC-hhhcCHHHHH
Confidence 444444 6778877765
No 398
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.43 E-value=0.00014 Score=67.20 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=30.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
|..++|.||||+||||+|+.+|+.++.+++ +..+++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdllr~ 43 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNILRE 43 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHHHH
Confidence 445999999999999999999999987665 44455543
No 399
>PRK13695 putative NTPase; Provisional
Probab=97.43 E-value=0.0022 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.6
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++|+|++|+|||++++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988765
No 400
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.43 E-value=0.00054 Score=66.53 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=31.1
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQ 239 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~ 239 (423)
|+..+..++|+||||+|||+++-.+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666668999999999999999988663 33677777654
No 401
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00054 Score=62.72 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+=|.||+|||||||+++++...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 455678899999999999999999854
No 402
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.42 E-value=0.0011 Score=58.75 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=58.4
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccch--hhhhhhhch-HHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQ--LVQMFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~--l~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
.++..+.|.||+|+|||+|++.++.... .--+.++... +......-+ ....+-.+..+-...|.++++||--.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 4556788999999999999999998652 1122232211 010100011 1122233445555778999999986532
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
+......+..++..+.. ..+..+|.+|..
T Consensus 103 ----------D~~~~~~l~~~l~~~~~---~~~~tiiivsH~ 131 (177)
T cd03222 103 ----------DIEQRLNAARAIRRLSE---EGKKTALVVEHD 131 (177)
T ss_pred ----------CHHHHHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 55556666666665421 121335555553
No 403
>PRK06696 uridine kinase; Validated
Probab=97.42 E-value=0.00027 Score=65.23 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 241 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~ 241 (423)
.+.-|.+.|+||+||||+|+.|++.+ +.+++.+++.+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34568899999999999999999998 6678887777664
No 404
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.0013 Score=58.06 Aligned_cols=106 Identities=24% Similarity=0.332 Sum_probs=60.9
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccchhhh-------h---h-------hh-------chHH-HHH
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQ-------M---F-------IG-------DGAK-LVR 253 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~l~~-------~---~-------~g-------~~~~-~~~ 253 (423)
+.++..+.|.||+|+|||+|++.++..... --+.++...+.. . | .. -+.+ ..+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 356667999999999999999999997521 112222211100 0 0 00 0111 112
Q ss_pred HHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q 014525 254 DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321 (423)
Q Consensus 254 ~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~ 321 (423)
-.+..+-...|.++++||--.- -+......+.+++..+.. + ..+|.+|+.++.
T Consensus 105 l~la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~~----~-~tii~~sh~~~~ 157 (171)
T cd03228 105 IAIARALLRDPPILILDEATSA----------LDPETEALILEALRALAK----G-KTVIVIAHRLST 157 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhcC----C-CEEEEEecCHHH
Confidence 2344455578899999997653 245556677777766531 2 456666764443
No 405
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.41 E-value=0.0012 Score=60.56 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++.-+.|.||+|||||||...++.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44556999999999999999999874
No 406
>PTZ00035 Rad51 protein; Provisional
Probab=97.40 E-value=0.00072 Score=66.31 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=62.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchhhh-----hh---hhc---------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQLVQ-----MF---IGD--------------- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l~~-----~~---~g~--------------- 247 (423)
|+.+...+.|+||||+|||+++..++... +..+++++...-+. .. .+.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 56666678899999999999999887532 34556666543100 00 000
Q ss_pred -hHH---HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 014525 248 -GAK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 315 (423)
Q Consensus 248 -~~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~t 315 (423)
.+. .+..+........+.+|+||-|-.++.....+. +...+-+..+.+++..+.......++.|+.|
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 011 111122222345678999999998765422211 1112234445555555444333446666655
No 407
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.39 E-value=0.00055 Score=66.53 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=62.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh------C---CcEEEEccchhhhh--h------hhc---------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT------N---ATFLKLAGPQLVQM--F------IGD--------------- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l------~---~~~i~v~~~~l~~~--~------~g~--------------- 247 (423)
|+.+..-+.++||||+|||+++..++... + ...++++..+-+.. . .+.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 56666678999999999999999887532 1 35677765542110 0 000
Q ss_pred -hHH---HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 248 -GAK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 248 -~~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
.+. .+..+...+....+.+|+||-|-.++.....+. .....-+..+.+++..+..+....++.||.|.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 011 111222223345678999999998864322111 11112233445555555443333456666653
No 408
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0007 Score=63.76 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=46.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC----CcEEEEcc-chhh---------hhhhhchHHHHHHHHHHHHhCCCeEEEEC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAG-PQLV---------QMFIGDGAKLVRDAFQLAKEKSPCIIFID 270 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~-~~l~---------~~~~g~~~~~~~~~~~~a~~~~~~vl~iD 270 (423)
+=||++||+|+|||+...++-++.+ .+++++.- -+|+ ..-+|.-..........+.+..|.||++-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvG 205 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVG 205 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3488999999999999999988874 34444422 1222 22344433334455666777889999999
Q ss_pred Cchh
Q 014525 271 EIDA 274 (423)
Q Consensus 271 Eid~ 274 (423)
|+-.
T Consensus 206 EmRD 209 (353)
T COG2805 206 EMRD 209 (353)
T ss_pred cccc
Confidence 9854
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.38 E-value=0.00027 Score=63.32 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=45.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccc-hhhh---hhh----------hchHHHHHHHHHHHHhCCCeE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGP-QLVQ---MFI----------GDGAKLVRDAFQLAKEKSPCI 266 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~-~l~~---~~~----------g~~~~~~~~~~~~a~~~~~~v 266 (423)
....++|.||+|+|||+++++++..+. ...+.+... ++.. .+. +........++..+.+..|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 456799999999999999999998763 223333211 1110 000 111123445666677788999
Q ss_pred EEECCch
Q 014525 267 IFIDEID 273 (423)
Q Consensus 267 l~iDEid 273 (423)
+++.|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999994
No 410
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.38 E-value=0.00015 Score=65.09 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=28.6
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
++|+||||+|||++|+.||+.++..+ ++..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHH
Confidence 79999999999999999999988665 455555544
No 411
>PRK14530 adenylate kinase; Provisional
Probab=97.38 E-value=0.00016 Score=66.41 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++|.||||+|||++++.||+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998766533
No 412
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.38 E-value=0.0017 Score=57.34 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+..-+++.||+|.|||++.|.|+.+.
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 344458899999999999999998865
No 413
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.38 E-value=0.00015 Score=61.75 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=27.5
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
+.|.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987665
No 414
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.38 E-value=0.00019 Score=63.48 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=30.0
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
+..++|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999988876654
No 415
>PRK06547 hypothetical protein; Provisional
Probab=97.37 E-value=0.00018 Score=63.63 Aligned_cols=34 Identities=38% Similarity=0.447 Sum_probs=28.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
++..+++.|++|+|||++|+.+++.++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4567889999999999999999999887766443
No 416
>PRK10867 signal recognition particle protein; Provisional
Probab=97.37 E-value=0.0017 Score=65.60 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=47.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhhh-------h--------h-----hchHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM-------F--------I-----GDGAKLVRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~~-------~--------~-----g~~~~~~~~~~~~ 258 (423)
+|..++|+||+|+|||+++..+|..+ +..+..+++..+... | + .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 46679999999999999888888755 455666665422111 0 0 1222333445556
Q ss_pred HHhCCCeEEEECCchhh
Q 014525 259 AKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 259 a~~~~~~vl~iDEid~l 275 (423)
++...+.+|++|=.-.+
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66667789999987664
No 417
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.37 E-value=0.0022 Score=56.54 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=27.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHh---CCcEEEEccch
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 239 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~ 239 (423)
.+++.||||+|||+++..++..+ +..+..+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 36899999999999999998876 55666777653
No 418
>PLN02674 adenylate kinase
Probab=97.36 E-value=0.00048 Score=64.14 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=31.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
++..++|.||||+||||+++.||+.++. ..+++.+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHHH
Confidence 4457999999999999999999999885 45566666544
No 419
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.35 E-value=0.0016 Score=60.94 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+++.-+-|.||.|||||||.|++++.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 344568899999999999999999965
No 420
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.35 E-value=0.0013 Score=60.65 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
+...++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999987
No 421
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.34 E-value=0.0014 Score=58.00 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=19.1
Q ss_pred CCceEEcCCCCChhH-HHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTL-MARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~-la~ala~~l 228 (423)
+++++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555544
No 422
>PRK13764 ATPase; Provisional
Probab=97.34 E-value=0.00029 Score=73.62 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=43.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEc-cchhh-----hhhhhchHHHHHHHHHHHHhCCCeEEEECCch
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLA-GPQLV-----QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID 273 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~-~~~l~-----~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid 273 (423)
...++|++||||+||||++++++..+. ..+.++. ..++. ..|.. ...........+.+..|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 346799999999999999999998874 2232332 12221 11100 00111223333456779999999985
Q ss_pred h
Q 014525 274 A 274 (423)
Q Consensus 274 ~ 274 (423)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 3
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.33 E-value=0.00024 Score=69.44 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=48.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEc-cchhhh-h----------h--hhchHHHHHHHHHHHHhCCCeE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLA-GPQLVQ-M----------F--IGDGAKLVRDAFQLAKEKSPCI 266 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~-~~~l~~-~----------~--~g~~~~~~~~~~~~a~~~~~~v 266 (423)
...+++++||+|+|||++++++..... ..++.+. ..++.- . . .|...-....+...+.+..|.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 456899999999999999999999874 2333331 122210 0 0 0111123456778888899999
Q ss_pred EEECCchh
Q 014525 267 IFIDEIDA 274 (423)
Q Consensus 267 l~iDEid~ 274 (423)
|++.|+-.
T Consensus 239 IivGEiR~ 246 (332)
T PRK13900 239 IIVGELRG 246 (332)
T ss_pred EEEEecCC
Confidence 99999953
No 424
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.32 E-value=0.00022 Score=62.81 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.4
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
..++|+|++|+|||++++.+|+.++.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999987554
No 425
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.32 E-value=0.0024 Score=64.18 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=46.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh-------h--------hh-----chHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-------F--------IG-----DGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~-------~--------~g-----~~~~~~~~~~~~a 259 (423)
+|..++|+||+|+||||++..+|..+ +..+..+++..+... | .+ .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999877 556666666432100 0 10 1112223344555
Q ss_pred HhCCCeEEEECCchhh
Q 014525 260 KEKSPCIIFIDEIDAI 275 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l 275 (423)
+...+.+|+||=...+
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999977654
No 426
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.32 E-value=0.016 Score=59.67 Aligned_cols=123 Identities=17% Similarity=0.264 Sum_probs=86.6
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCH
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTE 343 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~ 343 (423)
|+|++|.++|.++ .++.+.+.+..+...... ..+.+|+.+.+ -.+++.|. ++-.++.+|.|+.
T Consensus 82 ~~~~vl~d~h~~~---------~~~~~~r~l~~l~~~~~~---~~~~~i~~~~~--~~~p~el~---~~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFL---------NDISISRKLRNLSRILKT---QPKTIIIIASE--LNIPKELK---DLITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhh---------cchHHHHHHHHHHHHHHh---CCCEEEEEcCC--CCCCHHHH---hceeEEeecCcCH
Confidence 6899999999987 244566666666554433 34455666543 55777776 4657899999999
Q ss_pred HHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 344 EARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 344 ~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
+++..+++......+.. .+.++..++..+.|++..+++.++..+.. . ...++.+++...+
T Consensus 145 ~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~-~~~~~~~~~~~i~ 205 (489)
T CHL00195 145 SEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----T-YKTIDENSIPLIL 205 (489)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----H-cCCCChhhHHHHH
Confidence 99999998877644433 34457889999999999999999887542 1 2346666554443
No 427
>PF13245 AAA_19: Part of AAA domain
Probab=97.32 E-value=0.00035 Score=52.82 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=21.8
Q ss_pred CCceEEcCCCCChh-HHHHHHHHHh------CCcEEEEcc
Q 014525 205 KGVLLYGPPGTGKT-LMARACAAQT------NATFLKLAG 237 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT-~la~ala~~l------~~~~i~v~~ 237 (423)
+.+++.|||||||| ++++.++... +..++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 34666999999999 5556666655 344555543
No 428
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.32 E-value=0.00083 Score=65.81 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchh---------hhhhh---------------h
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL---------VQMFI---------------G 246 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l---------~~~~~---------------g 246 (423)
|+.+..-+.++|+||+|||.++..+|-.. +..+++++..+- ...+- -
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 56666678899999999999998887432 236777776541 11000 0
Q ss_pred chHH---HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q 014525 247 DGAK---LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN 317 (423)
Q Consensus 247 ~~~~---~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn 317 (423)
..+. .+..+........+.+|+||-|-.++.....+. ......+..|.+++..+..+....++.||.|..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 0011 111122223455789999999998875322211 111223344566666555444445666666643
No 429
>PRK13946 shikimate kinase; Provisional
Probab=97.31 E-value=0.00019 Score=64.12 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=29.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
++.|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 357999999999999999999999999987665
No 430
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.0013 Score=58.17 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=59.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccch--------------------hhhh-hhh----chHH-HHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQ--------------------LVQM-FIG----DGAK-LVR 253 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~--------------------l~~~-~~g----~~~~-~~~ 253 (423)
.++..+.|.||+|+|||+|++.++..... --+.++... +... .+. -+.+ ..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHH
Confidence 45567999999999999999999986421 011111110 0000 000 0111 122
Q ss_pred HHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 254 DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 254 ~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
-.+..+-...|.++++||-..-. +......+.+++..+.. .+. .+|.+|..
T Consensus 104 v~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~---~g~-tiii~th~ 154 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKK---EGK-TILLSSHI 154 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---CCC-EEEEECCC
Confidence 34555556788999999987642 55666777777776532 123 35555553
No 431
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.31 E-value=0.00058 Score=66.20 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=45.2
Q ss_pred cc-cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-CcEEEEc
Q 014525 169 YN-DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-ATFLKLA 236 (423)
Q Consensus 169 ~~-~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-~~~i~v~ 236 (423)
|+ ++.|.++.+..+++.+..+.... + ...+-++|.||+|+|||++++.|.+.+. .+++.+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~------~-~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGL------E-ERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhcc------C-ccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 44 78999999999999886544331 1 1234588999999999999999998773 3444443
No 432
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.30 E-value=0.001 Score=57.26 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=28.7
Q ss_pred ceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh
Q 014525 207 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 241 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~ 241 (423)
++|+|+||+|||++|+.++..+ +...+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999998 5566777655443
No 433
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.28 E-value=0.0009 Score=64.05 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----C-CcEEEEccch
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----N-ATFLKLAGPQ 239 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~-~~~i~v~~~~ 239 (423)
.++.++|+||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35579999999999999999998865 3 4555566544
No 434
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.27 E-value=0.0044 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
-+.+|+++|.|||++|-.+|-..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999888765
No 435
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.27 E-value=0.014 Score=56.63 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=31.0
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcCCCCCCCC----HHHHHHhCCCCcHHHHHH
Q 014525 335 KIEFPHPTEEARARILQIHSRKMNVHPDVN----FEELARSTDDFNGAQLKA 382 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~----l~~la~~~~g~s~~dl~~ 382 (423)
.+.++.++.+|...+++.+...--+....+ ...+.- ..|.+++++..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~-~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFL-SSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHH-hcCCCHHHhcc
Confidence 688999999999999999887644442111 233333 33567887753
No 436
>PRK14528 adenylate kinase; Provisional
Probab=97.27 E-value=0.00024 Score=63.65 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=28.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+++.||||+|||++|+.+++.++.+++. +.+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 58999999999999999999999877654 44544
No 437
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00024 Score=60.82 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=25.5
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
+-+.|||||||||+|+.||+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999998873
No 438
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.27 E-value=0.0022 Score=56.03 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++..+++||.|+|||++.++++-.
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998553
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.26 E-value=0.00031 Score=68.17 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=46.8
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEc-cchhhh---hh---------hhchHHHHHHHHHHHHhCCCe
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLA-GPQLVQ---MF---------IGDGAKLVRDAFQLAKEKSPC 265 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~-~~~l~~---~~---------~g~~~~~~~~~~~~a~~~~~~ 265 (423)
+....++++.||+|+|||+++++++..+. ...+.+. ..++.- .. .+...-....++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 34567899999999999999999998763 2223332 111110 00 011112244566777788899
Q ss_pred EEEECCch
Q 014525 266 IIFIDEID 273 (423)
Q Consensus 266 vl~iDEid 273 (423)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999995
No 440
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.26 E-value=0.0025 Score=65.67 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=58.1
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEcc-chhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAG-PQLV 241 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~-~~l~ 241 (423)
..++++++-.++.++.+...+. .+.+-++++||+|+|||+++.++.+.+. ..++++.- .++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 3567787666666666666542 1223478999999999999998887763 33454432 1221
Q ss_pred hh-----hhhch-HHHHHHHHHHHHhCCCeEEEECCchh
Q 014525 242 QM-----FIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDA 274 (423)
Q Consensus 242 ~~-----~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~ 274 (423)
-. .+... ..........+.+..|.||++.|+-.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11 01110 01223455566678899999999953
No 441
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00052 Score=63.99 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=56.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccch-------------------------hhhhhhhchHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQ-------------------------LVQMFIGDGAKLVRD 254 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~-------------------------l~~~~~g~~~~~~~~ 254 (423)
..+..+-|.|++||||||+++.+..-... --+.+++.+ +..+|..+..+..++
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 45567999999999999999999986531 112222211 111122222222233
Q ss_pred --HHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc
Q 014525 255 --AFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 302 (423)
Q Consensus 255 --~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~ 302 (423)
.+..|..-.|.+++.||.-... +-.+|..++.+|..++
T Consensus 117 Ri~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq 156 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQ 156 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHH
Confidence 3445556779999999998864 4556777777776554
No 442
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.26 E-value=0.00076 Score=65.47 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=46.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEc-cchhhhh------hhhchHHHHHHHHHHHHhCCCeEEEECC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLA-GPQLVQM------FIGDGAKLVRDAFQLAKEKSPCIIFIDE 271 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~-~~~l~~~------~~g~~~~~~~~~~~~a~~~~~~vl~iDE 271 (423)
..++++.|++|+|||+++++++... +..++.+. ..++.-. +.....-....++..+.+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4679999999999999999999876 23344332 2232210 0011112245667777889999999999
Q ss_pred ch
Q 014525 272 ID 273 (423)
Q Consensus 272 id 273 (423)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 94
No 443
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.26 E-value=0.00074 Score=65.56 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=31.9
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
+.++..++|+|+||||||++++.+|..++.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456778999999999999999999999999998544
No 444
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.24 E-value=0.0028 Score=65.42 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHH----hCCcEEEEccc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQ----TNATFLKLAGP 238 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~----l~~~~i~v~~~ 238 (423)
|+.+++.+|+.||||||||++|..++.+ .+.+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6777888999999999999999987543 25676666643
No 445
>PRK02496 adk adenylate kinase; Provisional
Probab=97.23 E-value=0.00028 Score=63.03 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.0
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++|.||||+|||++++.|+..++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998765543
No 446
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.23 E-value=0.0022 Score=67.37 Aligned_cols=95 Identities=24% Similarity=0.302 Sum_probs=59.9
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEccc-hhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGP-QLV 241 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~-~l~ 241 (423)
..++++++-....++.+.+.+. .+.+.+|++||+|+|||++..++.+.++ ..++++--+ ++.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~--------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIH--------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 3567888666677777776552 1334588999999999999988888774 234443221 221
Q ss_pred h-----hhhhc-hHHHHHHHHHHHHhCCCeEEEECCchh
Q 014525 242 Q-----MFIGD-GAKLVRDAFQLAKEKSPCIIFIDEIDA 274 (423)
Q Consensus 242 ~-----~~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~ 274 (423)
- ..++. .......+...+.+..|.||++.||-.
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 0 01110 111234556677788999999999954
No 447
>PRK10263 DNA translocase FtsK; Provisional
Probab=97.23 E-value=0.004 Score=69.43 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=51.3
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--CCChhhhcCCCcceEEEcCCCC
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD--ILDPALMRSGRLDRKIEFPHPT 342 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~~~~Rf~~~i~~~~p~ 342 (423)
-||+|||+..|... ...++...+..+....+ .-+|.+|++|.+|+ .+...++. -|...|.|..-+
T Consensus 1142 IVVIIDE~AdLm~~-------~~kevE~lI~rLAqkGR----AaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMT-------VGKKVEELIARLAQKAR----AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhh-------hhHHHHHHHHHHHHHhh----hcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 48999999887532 12344455555555433 24788899999886 46666665 788899998888
Q ss_pred HHHHHHHHH
Q 014525 343 EEARARILQ 351 (423)
Q Consensus 343 ~~~r~~Il~ 351 (423)
..+-..||.
T Consensus 1209 ~~DSrtILd 1217 (1355)
T PRK10263 1209 KIDSRTILD 1217 (1355)
T ss_pred HHHHHHhcC
Confidence 877777774
No 448
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.22 E-value=0.0021 Score=68.95 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++|+..+-+.|++|||||||+|.+....
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3555669999999999999999998854
No 449
>PRK14527 adenylate kinase; Provisional
Probab=97.22 E-value=0.00025 Score=63.74 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=29.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+.-++++||||+|||++|+.+++.++...+ +..+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i--s~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL--STGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC--CccHHH
Confidence 4567999999999999999999999886544 444444
No 450
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.22 E-value=0.00054 Score=59.06 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=28.9
Q ss_pred EEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhh
Q 014525 209 LYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 245 (423)
Q Consensus 209 l~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~ 245 (423)
|.||||+|||++|+.||..++. ..++..+++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999874 5677777766544
No 451
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.21 E-value=0.0017 Score=64.57 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=24.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.+..+++.||.|||||++.+++.+.+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 557899999999999999999998873
No 452
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.21 E-value=0.00031 Score=62.61 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=28.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
.+++.||||+||||+++.+++.++.. .+++.+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHHH
Confidence 58899999999999999999998755 455555443
No 453
>PRK10436 hypothetical protein; Provisional
Probab=97.21 E-value=0.00093 Score=68.10 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=59.1
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEc-cchhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLA-GPQLVQ 242 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~-~~~l~~ 242 (423)
.++++++-.+..++.+.+.+. .+.+-+|++||+|+||||+..++..+++ ..++.+- ..++.-
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~--------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ--------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH--------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 467888666666666766552 1344589999999999999988877763 3344442 122211
Q ss_pred h-----hhhc-hHHHHHHHHHHHHhCCCeEEEECCchh
Q 014525 243 M-----FIGD-GAKLVRDAFQLAKEKSPCIIFIDEIDA 274 (423)
Q Consensus 243 ~-----~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~ 274 (423)
. .++. ...........+.+..|.||++.||-.
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 0 1111 111234556667788999999999953
No 454
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00024 Score=61.56 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.++++|.||||||++++.++ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8888777555
No 455
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.21 E-value=0.0007 Score=67.00 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 456
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.20 E-value=0.0034 Score=63.41 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=47.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhh-------hh--------h--h--c-hHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQ-------MF--------I--G--D-GAKLVRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~-------~~--------~--g--~-~~~~~~~~~~~ 258 (423)
+|..+++.||+|+|||+++..+|..+ +..+..+++..+.. .+ . + . ...........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999998888764 45666666653311 11 0 0 1 12233445555
Q ss_pred HHhCCCeEEEECCchhh
Q 014525 259 AKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 259 a~~~~~~vl~iDEid~l 275 (423)
+....+.+|++|=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 66667789999977654
No 457
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.20 E-value=0.00087 Score=65.14 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=46.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEc-cchhhh---hh---hhchHHHHHHHHHHHHhCCCeEEEEC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLA-GPQLVQ---MF---IGDGAKLVRDAFQLAKEKSPCIIFID 270 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~-~~~l~~---~~---~g~~~~~~~~~~~~a~~~~~~vl~iD 270 (423)
...++++.||+|+|||+++++++... ...++.+. ..++.- .+ .....-....++..+.+..|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 35689999999999999999999864 12333332 222210 01 00111234567778888999999999
Q ss_pred Cch
Q 014525 271 EID 273 (423)
Q Consensus 271 Eid 273 (423)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 995
No 458
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.20 E-value=0.0051 Score=62.69 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=35.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
+...+++.|+.+++.|-..|-.+-+..|+..|-+.|++-+.-
T Consensus 603 t~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~f 644 (818)
T KOG0479|consen 603 TSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRF 644 (818)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHH
Confidence 345678999999999999999999999999999999887653
No 459
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.19 E-value=0.00031 Score=64.23 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=28.2
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
++++||||+|||++|+.||..++.+++ ++.+++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i--s~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI--STGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee--ehhHHHHH
Confidence 789999999999999999999886655 44455443
No 460
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.19 E-value=0.0035 Score=65.24 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=50.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh------hh----------------------ch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF------IG----------------------DG 248 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~------~g----------------------~~ 248 (423)
|+..+..++++||||+|||+++..++... +.++++++..+-...+ +| ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56677779999999999999998887654 5566666543211110 00 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCchhhhc
Q 014525 249 AKLVRDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
...+..+...+....+.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12233344455566788999999988753
No 461
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.19 E-value=0.0037 Score=65.10 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhhh--------------hh------------h---
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM--------------FI------------G--- 246 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~~--------------~~------------g--- 246 (423)
|++++..+|++|+||+|||+++..++... +.++++++..+-... +. .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 56677779999999999999999876532 456666664332111 00 0
Q ss_pred -------chHHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 247 -------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 247 -------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
.....+..+...+....+..|+||-+..+.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 143 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALF 143 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHH
Confidence 012223344555666778999999998764
No 462
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.18 E-value=0.013 Score=58.30 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=45.5
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC--CCCCChhhhcCCCcceEEEcCCCC
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR--ADILDPALMRSGRLDRKIEFPHPT 342 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~--~~~l~~~l~~~~Rf~~~i~~~~p~ 342 (423)
-||+||++..-.. .+..+...+.++-..+-. ..-.+| |+.|++. ...|..++-+ |.-..|.+.-.+
T Consensus 150 PVVVIdnF~~k~~--------~~~~iy~~laeWAa~Lv~-~nIAHV-IFlT~dv~~~k~LskaLPn--~vf~tI~L~Das 217 (431)
T PF10443_consen 150 PVVVIDNFLHKAE--------ENDFIYDKLAEWAASLVQ-NNIAHV-IFLTDDVSYSKPLSKALPN--RVFKTISLSDAS 217 (431)
T ss_pred CEEEEcchhccCc--------ccchHHHHHHHHHHHHHh-cCccEE-EEECCCCchhhhHHHhCCC--CceeEEeecCCC
Confidence 4899999966321 122344444444333211 111122 3344332 2346666644 666888999889
Q ss_pred HHHHHHHHHHHhhc
Q 014525 343 EEARARILQIHSRK 356 (423)
Q Consensus 343 ~~~r~~Il~~~~~~ 356 (423)
.+.-+.++..++..
T Consensus 218 ~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 218 PESAKQYVLSQLDE 231 (431)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888887764
No 463
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.18 E-value=0.00026 Score=58.71 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.8
Q ss_pred ceEEcCCCCChhHHHHHHHHHh
Q 014525 207 VLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l 228 (423)
|+|.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 464
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.0056 Score=61.95 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=27.8
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccch
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQ 239 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~ 239 (423)
+++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 34578999999999999999887654 24566666554
No 465
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.16 E-value=0.00033 Score=68.71 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=47.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEc-cchhhhh--------h----hhchHHHHHHHHHHHHhCCCeE
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLA-GPQLVQM--------F----IGDGAKLVRDAFQLAKEKSPCI 266 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~-~~~l~~~--------~----~g~~~~~~~~~~~~a~~~~~~v 266 (423)
....++++.||+|+|||+++++++.... ..++.+. ..++.-. + .|...-....++..+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 3557899999999999999999999763 2333332 1122100 0 0111122446777788889999
Q ss_pred EEECCch
Q 014525 267 IFIDEID 273 (423)
Q Consensus 267 l~iDEid 273 (423)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999984
No 466
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.16 E-value=0.003 Score=56.19 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=27.7
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+.|+|++|+|||++++.+++ ++.++ +++.++....
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~~~~ 36 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIAHEV 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHHHhh
Confidence 67999999999999999999 77665 5555655543
No 467
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.16 E-value=0.00037 Score=63.95 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=28.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
.|+++||||+|||++|+.||..++.+++. +.+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 38999999999999999999999866554 444443
No 468
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0012 Score=69.12 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=25.1
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++|+..+-|.||+|.|||++|..+-+..
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35677889999999999999999998854
No 469
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.15 E-value=0.0013 Score=59.58 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=31.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh-CCcEEEEccchhhhh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQLVQM 243 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l-~~~~i~v~~~~l~~~ 243 (423)
.|.-+++.|+||+|||+++..+...+ ...++.++..++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 45678999999999999999999988 778888988776543
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.14 E-value=0.0015 Score=61.40 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.8
Q ss_pred ceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh
Q 014525 207 VLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 240 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l 240 (423)
++|+|+||+|||++|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 456666665444
No 471
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.14 E-value=0.00071 Score=61.14 Aligned_cols=111 Identities=20% Similarity=0.311 Sum_probs=61.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
|.+....++|.|+-|+|||++.+.|+.. ++.-+.... .. .... ..+..+ -++.+||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~-----~~-kd~~----~~l~~~--~iveldEl~~~~k-- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF-----DD-KDFL----EQLQGK--WIVELDELDGLSK-- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC-----CC-cHHH----HHHHHh--HheeHHHHhhcch--
Confidence 5555566899999999999999999665 111111110 00 1111 112122 4889999998742
Q ss_pred CCCCCCCcHHHHHHHHHHHHhh----cCC------CCCCCeEEEEEcCCCCCCCh-hhhcCCCcceEEEcCC
Q 014525 280 FDSEVSGDREVQRTMLELLNQL----DGF------SSDDRIKVIAATNRADILDP-ALMRSGRLDRKIEFPH 340 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~----~~~------~~~~~v~vI~ttn~~~~l~~-~l~~~~Rf~~~i~~~~ 340 (423)
.-...+..++..- +.. ......++|+|||..+-|.. .--| || ..|.+..
T Consensus 110 ---------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 ---------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ---------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 2234555666421 110 11235778999998775533 3334 77 4555543
No 472
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.13 E-value=0.0073 Score=52.22 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=75.1
Q ss_pred EcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHH
Q 014525 210 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDRE 289 (423)
Q Consensus 210 ~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~ 289 (423)
.+.+|||||+++.+|++-++- +-.+...++.++ .....++.+.+.+......+||.|==.....
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~r------------ 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKR------------ 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHH------------
Confidence 578999999999999999873 333444444333 3445555666666444556888885544322
Q ss_pred HHHHHHHHHHhhcC--CCCCCCeEEEEEcCCCCCCCh--------hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCC
Q 014525 290 VQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDP--------ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMN 358 (423)
Q Consensus 290 ~~~~l~~ll~~~~~--~~~~~~v~vI~ttn~~~~l~~--------~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~ 358 (423)
-...+...+..+.. .....++.+|+-.=..+.-.+ .++.+|==...|.....+......|+..+++.+.
T Consensus 69 eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 69 ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 12334444443322 222346666665533332222 2233222223556556667777888888877654
No 473
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.13 E-value=0.0027 Score=57.24 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=24.5
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.++..+.|.||+|+|||+|++.++...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466679999999999999999999876
No 474
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.12 E-value=0.0013 Score=64.28 Aligned_cols=39 Identities=28% Similarity=0.222 Sum_probs=32.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
..++|.|+||+|||+|++.+++.++.+++.-...++...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~ 201 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEE 201 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHH
Confidence 479999999999999999999999988876665555443
No 475
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.12 E-value=0.0014 Score=63.30 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=26.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
-+++.||||||||++|+.+++.+. .++.++...+.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 588999999999999999999983 23444544443
No 476
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.11 E-value=0.0061 Score=54.88 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.++..+.|.||+|+|||+|++.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466679999999999999999999864
No 477
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.11 E-value=0.00069 Score=60.75 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=42.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh-------------CCcEEEEccchhh----hhh---hhc----------------
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT-------------NATFLKLAGPQLV----QMF---IGD---------------- 247 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l-------------~~~~i~v~~~~l~----~~~---~g~---------------- 247 (423)
..-++|+||||+|||+++-.++..+ +.++++++...-. ..+ .+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~ 111 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWG 111 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccc
Confidence 3448999999999999999988755 1356666543211 110 000
Q ss_pred -------------hHHHHHHHHHHHHh-CCCeEEEECCchhhhcc
Q 014525 248 -------------GAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 248 -------------~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~ 278 (423)
....+..+...+.. ..+.+|+||.+..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 112 CIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred cceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 11223445555555 56899999999999764
No 478
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.10 E-value=0.00055 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.6
Q ss_pred ceEEcCCCCChhHHHHHHHHHh
Q 014525 207 VLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 479
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.09 E-value=0.00052 Score=57.71 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=26.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCc
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNAT 231 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~ 231 (423)
+++..++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345578999999999999999999998754
No 480
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0032 Score=62.00 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 175 LEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 175 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
.+.....+.+.+...+..+..+ .+.+++.++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3455555555555444332222 23456679999999999999999999866 4445555544
No 481
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.08 E-value=0.0015 Score=59.18 Aligned_cols=24 Identities=46% Similarity=0.668 Sum_probs=19.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.-+.+.||.|||||+||-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 368999999999999999998765
No 482
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.0046 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++..+.|.||+|+|||+|++.++..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45567899999999999999999963
No 483
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.08 E-value=0.0051 Score=56.70 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+.+.++|+||.|+|||++.+.++.-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999998753
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.07 E-value=0.00063 Score=60.22 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAG 237 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~ 237 (423)
+|..++|.|+||+|||++++.+++.+. ...+.++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 556799999999999999999999885 23444544
No 485
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.0035 Score=56.83 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=23.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||+|++.++...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 456679999999999999999999864
No 486
>PRK08233 hypothetical protein; Provisional
Probab=97.07 E-value=0.00059 Score=60.47 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=26.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC-CcEEEEcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN-ATFLKLAG 237 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~-~~~i~v~~ 237 (423)
.-+.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44554543
No 487
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.06 E-value=0.0028 Score=68.44 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=41.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---C--CcEEEEccch----hhhhhhhchHHHHHHHHHHH---------H-hCCCe
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---N--ATFLKLAGPQ----LVQMFIGDGAKLVRDAFQLA---------K-EKSPC 265 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~--~~~i~v~~~~----l~~~~~g~~~~~~~~~~~~a---------~-~~~~~ 265 (423)
+.++|+|+||||||++++++...+ + .+++.+..+. -+....|.....++.++... . .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999997755 3 3444333221 11112232223333333211 0 12357
Q ss_pred EEEECCchhh
Q 014525 266 IIFIDEIDAI 275 (423)
Q Consensus 266 vl~iDEid~l 275 (423)
+|++||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999886
No 488
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.0073 Score=58.01 Aligned_cols=74 Identities=27% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh--------------------hhhchHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM--------------------FIGDGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~--------------------~~g~~~~~~~~~~~~a 259 (423)
.|..+||.|-.|+||||.+-.+|+.+ |..++...|..|... +-+++...+-+..+.+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 36779999999999999999999977 566666665544221 2234455566777888
Q ss_pred HhCCCeEEEECCchhhh
Q 014525 260 KEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l~ 276 (423)
+.....||++|=..+|-
T Consensus 218 kar~~DvvliDTAGRLh 234 (340)
T COG0552 218 KARGIDVVLIDTAGRLH 234 (340)
T ss_pred HHcCCCEEEEeCccccc
Confidence 88899999999998874
No 489
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.06 E-value=0.00063 Score=62.44 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=17.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
-.++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999997776666554
No 490
>PF13479 AAA_24: AAA domain
Probab=97.04 E-value=0.00094 Score=61.19 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=38.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCc-EEEEccchh-hhhh-----h-hchHHHHHHHHHHH--HhCCCeEEEECCchh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNAT-FLKLAGPQL-VQMF-----I-GDGAKLVRDAFQLA--KEKSPCIIFIDEIDA 274 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~-~i~v~~~~l-~~~~-----~-g~~~~~~~~~~~~a--~~~~~~vl~iDEid~ 274 (423)
-.++||||||+|||++|..+ +.+ |+.+..... +..+ + -.+-..+.+.+..+ ....+.+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 46999999999999999888 322 222222210 1110 0 01222233344332 245778999999887
Q ss_pred h
Q 014525 275 I 275 (423)
Q Consensus 275 l 275 (423)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 5
No 491
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0044 Score=55.80 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=20.9
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
+.....-|.||+||||||+.|.+-+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3445578999999999999999866
No 492
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.02 E-value=0.0014 Score=65.64 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+.|.|.|++|||||+|+++||..++..++.--+.++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 35699999999999999999999988776554333333
No 493
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.02 E-value=0.011 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
-+.|+||+|+|||+|+++++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999754
No 494
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=97.01 E-value=0.0086 Score=59.73 Aligned_cols=86 Identities=10% Similarity=0.233 Sum_probs=55.8
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEE--EcCCCC
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKI--EFPHPT 342 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i--~~~~p~ 342 (423)
-|+||||.|.|+.. +.......+.++...++. .+|-|+..|..|.+++..++. -+...| .+...+
T Consensus 257 lVfFfDEAHLLF~d-------a~kall~~ieqvvrLIRS----KGVGv~fvTQ~P~DiP~~VL~--QLGnrIQHaLRAfT 323 (502)
T PF05872_consen 257 LVFFFDEAHLLFND-------APKALLDKIEQVVRLIRS----KGVGVYFVTQNPTDIPDDVLG--QLGNRIQHALRAFT 323 (502)
T ss_pred EEEEEechhhhhcC-------CCHHHHHHHHHHHHHhhc----cCceEEEEeCCCCCCCHHHHH--hhhhHHHHHHhcCC
Confidence 46789999999854 455666666666665543 467788888999999998886 555555 455556
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC
Q 014525 343 EEARARILQIHSRKMNVHPDVN 364 (423)
Q Consensus 343 ~~~r~~Il~~~~~~~~~~~~~~ 364 (423)
+.+++.+ +.-...+...+..|
T Consensus 324 P~DqKav-k~aa~tfr~np~~d 344 (502)
T PF05872_consen 324 PKDQKAV-KAAAETFRPNPAFD 344 (502)
T ss_pred HhHHHHH-HHHHHhCCCCcccc
Confidence 6665554 33334444443333
No 495
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.0066 Score=53.84 Aligned_cols=104 Identities=25% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccch-----------------------hhhh-----hhh--chH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQ-----------------------LVQM-----FIG--DGA 249 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~-----------------------l~~~-----~~g--~~~ 249 (423)
.++..+.|.||+|+|||+|+++++..+.. --+.++... +... ... -+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 45566889999999999999999976421 011121110 0000 000 111
Q ss_pred -HHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 250 -KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 250 -~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
...+-.+..+-...|.++++||--.- -+......+.+++..+.. ..+..+|.+|..
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~ 160 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQA---QLGITVVLVTHD 160 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCC
Confidence 11223345555678899999998653 256666777777776532 112335555553
No 496
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.98 E-value=0.00068 Score=58.56 Aligned_cols=38 Identities=32% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 242 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~ 242 (423)
..++|+|.||+|||++|+++.+.+ +.+.+.+++..+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 458999999999999999999987 67888888776644
No 497
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.97 E-value=0.0059 Score=55.28 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=24.0
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356677999999999999999999986
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.97 E-value=0.001 Score=65.65 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=42.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC------CcEEEEc-cchhhhh------------hhhchHHHHHHHHHHHHhCC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN------ATFLKLA-GPQLVQM------------FIGDGAKLVRDAFQLAKEKS 263 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~------~~~i~v~-~~~l~~~------------~~g~~~~~~~~~~~~a~~~~ 263 (423)
+.+.++++||+|+|||++++++++.+. ..++.+. ..++.-. .++............+.+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 345699999999999999999998762 2333332 1121110 01100112233444566778
Q ss_pred CeEEEECCch
Q 014525 264 PCIIFIDEID 273 (423)
Q Consensus 264 ~~vl~iDEid 273 (423)
|.++++.|+-
T Consensus 213 Pd~i~vGEiR 222 (358)
T TIGR02524 213 PHAILVGEAR 222 (358)
T ss_pred CCEEeeeeeC
Confidence 9999999984
No 499
>PRK04182 cytidylate kinase; Provisional
Probab=96.96 E-value=0.00072 Score=59.78 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=26.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
.++|.|++|+|||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988764
No 500
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.018 Score=53.10 Aligned_cols=187 Identities=11% Similarity=0.111 Sum_probs=100.2
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEE-Ec-cchhhhhhhh--chHHHHHHHH---HHHHhCCC-e-EE--EE
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK-LA-GPQLVQMFIG--DGAKLVRDAF---QLAKEKSP-C-II--FI 269 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~-v~-~~~l~~~~~g--~~~~~~~~~~---~~a~~~~~-~-vl--~i 269 (423)
...|.-+||=|+||+|||++|.-+|.++|..-+. -+ ..+++.+.++ ..+..-...| ...+.... . || |.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~ 165 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE 165 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence 3456678999999999999999999999976432 21 1133333322 1111111111 11111111 1 11 23
Q ss_pred CCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHH
Q 014525 270 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 349 (423)
Q Consensus 270 DEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~I 349 (423)
|.+... ...+...+...+.+. .++++=+.--.|..+++..+. --...+.+-.++.+.-+.-
T Consensus 166 dqa~~V-----------~~GI~~VI~RAi~eG------~~lIIEGvHlVPg~i~~~~~~--~n~~~~~l~i~dee~Hr~R 226 (299)
T COG2074 166 DQASAV-----------MVGIEAVIERAIEEG------EDLIIEGVHLVPGLIKEEALG--NNVFMFMLYIADEELHRER 226 (299)
T ss_pred HHhHHH-----------HHHHHHHHHHHHhcC------cceEEEeeeeccccccHhhhc--cceEEEEEEeCCHHHHHHH
Confidence 333332 112333444444332 234333433456777777662 2223445556676655554
Q ss_pred HHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 350 LQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 350 l~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
|-...+....... ....+... .+++.+-......|...+-+.|..+|+..+.+++..
T Consensus 227 F~~R~~~t~~~rp--~~Ryl~yf-----~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 227 FYDRIRYTHASRP--GGRYLEYF-----KEIRTIHDYLVERAREHGVPVIENDDIDETVDRILE 283 (299)
T ss_pred HHHHHHHHhccCc--hhHHHHHH-----HHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHH
Confidence 4444433222211 23333332 367777777788888889999999999999998876
Done!