Query 014525
Match_columns 423
No_of_seqs 451 out of 3421
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 13:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_M 26S protease regulatory 100.0 1.2E-66 4.1E-71 519.2 36.7 414 10-423 16-434 (434)
2 4b4t_J 26S protease regulatory 100.0 5.7E-65 1.9E-69 499.8 44.1 371 25-416 24-394 (405)
3 4b4t_I 26S protease regulatory 100.0 1.8E-63 6.2E-68 490.1 38.6 358 38-416 71-428 (437)
4 4b4t_K 26S protease regulatory 100.0 1.6E-62 5.4E-67 489.2 42.8 381 22-423 45-428 (428)
5 4b4t_L 26S protease subunit RP 100.0 1.1E-61 3.8E-66 483.8 41.1 365 37-422 69-435 (437)
6 4b4t_H 26S protease regulatory 100.0 1.8E-58 6E-63 458.8 36.6 314 101-414 140-453 (467)
7 3cf2_A TER ATPase, transitiona 100.0 2E-45 6.7E-50 390.4 11.9 261 162-422 469-755 (806)
8 3cf2_A TER ATPase, transitiona 100.0 7E-43 2.4E-47 370.9 21.3 252 162-416 196-464 (806)
9 3h4m_A Proteasome-activating n 100.0 6.8E-39 2.3E-43 305.8 29.3 261 157-417 4-264 (285)
10 3cf0_A Transitional endoplasmi 100.0 8.2E-40 2.8E-44 315.0 19.9 253 163-415 8-285 (301)
11 2ce7_A Cell division protein F 100.0 1.1E-37 3.7E-42 315.4 27.2 249 164-413 10-258 (476)
12 2x8a_A Nuclear valosin-contain 100.0 1.9E-38 6.5E-43 301.1 19.9 249 164-415 4-268 (274)
13 1lv7_A FTSH; alpha/beta domain 100.0 7.7E-37 2.6E-41 287.5 29.1 249 163-412 5-253 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.6E-37 8.9E-42 300.2 23.1 248 163-416 5-304 (322)
15 3eie_A Vacuolar protein sortin 100.0 2.7E-37 9.2E-42 300.3 20.3 248 162-415 10-302 (322)
16 3hu3_A Transitional endoplasmi 100.0 4.7E-36 1.6E-40 305.7 26.6 251 165-418 199-466 (489)
17 2qp9_X Vacuolar protein sortin 100.0 2E-36 6.7E-41 297.9 22.1 249 162-416 43-336 (355)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.3E-36 1.1E-40 283.3 20.2 251 165-416 1-254 (262)
19 2dhr_A FTSH; AAA+ protein, hex 100.0 1.8E-35 6.3E-40 300.7 23.9 249 165-414 26-274 (499)
20 1ixz_A ATP-dependent metallopr 100.0 3.1E-34 1.1E-38 269.2 27.8 245 163-408 9-253 (254)
21 2zan_A Vacuolar protein sortin 100.0 4.2E-35 1.4E-39 296.6 18.6 250 161-416 125-426 (444)
22 1iy2_A ATP-dependent metallopr 100.0 7.5E-33 2.6E-37 263.4 29.4 245 163-408 33-277 (278)
23 2r62_A Cell division protease 100.0 1.6E-36 5.4E-41 286.9 1.6 253 164-417 5-259 (268)
24 3b9p_A CG5977-PA, isoform A; A 100.0 1E-33 3.5E-38 271.6 19.7 249 162-413 13-274 (297)
25 3d8b_A Fidgetin-like protein 1 100.0 2.1E-33 7.3E-38 276.6 21.4 249 161-415 75-338 (357)
26 3vfd_A Spastin; ATPase, microt 100.0 2.1E-32 7.3E-37 272.5 23.9 250 160-413 105-367 (389)
27 1ypw_A Transitional endoplasmi 100.0 2.2E-35 7.6E-40 318.0 -2.3 254 162-415 469-747 (806)
28 1ypw_A Transitional endoplasmi 100.0 1.4E-28 4.9E-33 265.1 29.1 248 163-413 197-461 (806)
29 3t15_A Ribulose bisphosphate c 99.9 2E-27 7E-32 227.5 14.3 178 199-382 31-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 1.9E-23 6.4E-28 201.0 18.6 223 170-405 31-280 (309)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.7E-24 5.8E-29 219.8 8.6 109 165-282 32-145 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 1.5E-22 5.3E-27 199.4 19.1 220 165-411 39-330 (368)
33 3pfi_A Holliday junction ATP-d 99.9 7E-22 2.4E-26 192.6 23.5 217 165-411 24-254 (338)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 2.4E-21 8.4E-26 187.4 20.6 218 163-411 5-238 (324)
35 1qvr_A CLPB protein; coiled co 99.9 1.5E-24 5.1E-29 236.1 -4.8 206 168-394 556-822 (854)
36 1ofh_A ATP-dependent HSL prote 99.9 2.3E-21 7.8E-26 186.1 14.9 240 170-411 15-299 (310)
37 2v1u_A Cell division control p 99.9 3.4E-20 1.2E-24 183.1 22.6 226 167-413 16-278 (387)
38 3m6a_A ATP-dependent protease 99.8 8.8E-22 3E-26 203.6 8.8 226 167-410 78-340 (543)
39 3hws_A ATP-dependent CLP prote 99.8 1.6E-20 5.4E-25 185.0 16.8 235 171-407 16-345 (363)
40 1d2n_A N-ethylmaleimide-sensit 99.8 2.9E-20 9.8E-25 175.7 15.5 208 168-388 31-246 (272)
41 1g8p_A Magnesium-chelatase 38 99.8 8.2E-20 2.8E-24 178.4 18.3 224 164-416 18-327 (350)
42 2chg_A Replication factor C sm 99.8 6.2E-19 2.1E-23 159.9 21.8 202 164-409 11-224 (226)
43 3pxi_A Negative regulator of g 99.8 8.1E-20 2.8E-24 196.6 18.2 200 169-393 490-726 (758)
44 1r6b_X CLPA protein; AAA+, N-t 99.8 5.8E-20 2E-24 197.9 16.6 199 170-392 458-716 (758)
45 4fcw_A Chaperone protein CLPB; 99.8 5E-20 1.7E-24 177.1 14.1 209 169-394 16-281 (311)
46 2qby_B CDC6 homolog 3, cell di 99.8 2.6E-19 8.8E-24 177.0 18.2 213 170-413 20-272 (384)
47 1l8q_A Chromosomal replication 99.8 5.5E-19 1.9E-23 171.2 19.8 218 165-411 6-240 (324)
48 2r44_A Uncharacterized protein 99.8 1.2E-19 4.2E-24 176.3 14.7 219 167-415 24-301 (331)
49 2z4s_A Chromosomal replication 99.8 1E-18 3.5E-23 176.2 21.2 220 165-412 100-333 (440)
50 3pvs_A Replication-associated 99.8 3.1E-19 1.1E-23 180.0 17.1 205 165-411 21-244 (447)
51 1um8_A ATP-dependent CLP prote 99.8 1.8E-19 6.2E-24 178.3 13.6 237 170-408 21-362 (376)
52 1g41_A Heat shock protein HSLU 99.8 2.5E-20 8.4E-25 186.0 5.5 169 170-350 15-188 (444)
53 2qby_A CDC6 homolog 1, cell di 99.8 5.9E-18 2E-22 166.8 22.0 224 167-413 17-274 (386)
54 1njg_A DNA polymerase III subu 99.8 6.3E-18 2.1E-22 155.1 20.3 203 164-408 17-248 (250)
55 3bos_A Putative DNA replicatio 99.8 4.9E-18 1.7E-22 156.4 19.4 206 165-409 23-241 (242)
56 2bjv_A PSP operon transcriptio 99.8 1.3E-18 4.4E-23 163.7 15.6 211 167-404 3-250 (265)
57 1sxj_D Activator 1 41 kDa subu 99.8 8.2E-18 2.8E-22 164.3 20.0 207 164-409 31-261 (353)
58 3u61_B DNA polymerase accessor 99.8 2.6E-18 8.7E-23 166.4 16.1 203 164-410 20-236 (324)
59 1in4_A RUVB, holliday junction 99.8 3.8E-17 1.3E-21 159.0 24.5 218 165-412 20-251 (334)
60 1sxj_A Activator 1 95 kDa subu 99.8 2.2E-18 7.6E-23 177.3 15.5 226 162-411 31-274 (516)
61 1fnn_A CDC6P, cell division co 99.8 1.1E-17 3.9E-22 165.3 20.0 223 167-412 14-275 (389)
62 1jbk_A CLPB protein; beta barr 99.8 1.4E-18 4.9E-23 153.8 12.1 159 166-350 18-194 (195)
63 3te6_A Regulatory protein SIR3 99.8 8.3E-19 2.8E-23 168.2 9.8 214 172-412 22-316 (318)
64 3pxg_A Negative regulator of g 99.8 3E-18 1E-22 174.1 14.0 208 165-413 175-408 (468)
65 1r6b_X CLPA protein; AAA+, N-t 99.8 1.7E-17 5.7E-22 178.6 18.8 222 166-412 182-434 (758)
66 1ojl_A Transcriptional regulat 99.7 3E-18 1E-22 164.5 10.6 206 170-405 2-246 (304)
67 1sxj_B Activator 1 37 kDa subu 99.7 1.1E-16 3.6E-21 154.2 20.3 203 164-410 15-230 (323)
68 2chq_A Replication factor C sm 99.7 2.4E-17 8.3E-22 158.5 14.7 206 163-408 10-223 (319)
69 1iqp_A RFCS; clamp loader, ext 99.7 1.8E-16 6E-21 153.0 20.0 204 164-407 19-230 (327)
70 2p65_A Hypothetical protein PF 99.7 2.4E-17 8.1E-22 145.5 12.0 152 166-342 18-187 (187)
71 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 9E-18 3.1E-22 170.9 10.2 207 170-405 22-280 (500)
72 3pxi_A Negative regulator of g 99.7 5.1E-17 1.7E-21 174.8 16.6 206 165-411 175-406 (758)
73 1jr3_A DNA polymerase III subu 99.7 1.8E-16 6E-21 156.0 18.5 203 164-408 10-241 (373)
74 1qvr_A CLPB protein; coiled co 99.7 9.5E-17 3.3E-21 174.7 17.0 203 166-394 166-395 (854)
75 3f9v_A Minichromosome maintena 99.7 1.9E-17 6.4E-22 172.7 8.2 226 170-414 295-590 (595)
76 1sxj_E Activator 1 40 kDa subu 99.7 1.5E-15 5.1E-20 148.5 16.8 194 162-391 6-244 (354)
77 1sxj_C Activator 1 40 kDa subu 99.6 3.6E-15 1.2E-19 145.3 17.6 208 163-409 18-237 (340)
78 3n70_A Transport activator; si 99.6 5.6E-16 1.9E-20 132.2 9.5 132 171-341 2-144 (145)
79 3co5_A Putative two-component 99.6 3.1E-16 1.1E-20 133.5 7.4 132 171-341 5-142 (143)
80 3k1j_A LON protease, ATP-depen 99.6 4.1E-15 1.4E-19 155.8 16.1 222 161-410 32-374 (604)
81 1w5s_A Origin recognition comp 99.6 8.4E-14 2.9E-18 138.5 20.9 230 168-412 20-294 (412)
82 1ny5_A Transcriptional regulat 99.5 2.3E-13 7.7E-18 134.9 17.3 210 169-408 136-384 (387)
83 1a5t_A Delta prime, HOLB; zinc 99.5 8.3E-13 2.8E-17 128.3 17.4 173 175-386 7-207 (334)
84 3kw6_A 26S protease regulatory 99.4 3.9E-13 1.3E-17 101.8 8.9 77 339-415 1-77 (78)
85 3dzd_A Transcriptional regulat 99.4 2E-12 6.8E-17 127.1 14.8 195 170-391 129-361 (368)
86 2krk_A 26S protease regulatory 99.4 4.2E-13 1.4E-17 103.3 7.8 78 338-415 8-85 (86)
87 2gno_A DNA polymerase III, gam 99.4 1.8E-12 6.2E-17 124.0 13.6 142 174-354 1-152 (305)
88 3cmw_A Protein RECA, recombina 99.4 6.2E-13 2.1E-17 150.5 8.5 153 165-318 1015-1217(1706)
89 3aji_B S6C, proteasome (prosom 99.3 1.4E-12 4.7E-17 100.0 6.9 83 341-423 1-83 (83)
90 3ec2_A DNA replication protein 99.3 3.3E-12 1.1E-16 112.6 9.6 133 166-319 6-143 (180)
91 4akg_A Glutathione S-transfera 99.3 3.2E-11 1.1E-15 142.1 17.0 173 203-389 1266-1487(2695)
92 3f8t_A Predicted ATPase involv 99.3 8.1E-11 2.8E-15 116.9 17.2 218 172-415 215-487 (506)
93 3vlf_B 26S protease regulatory 99.3 7.7E-12 2.6E-16 96.8 7.9 74 342-415 2-75 (88)
94 2fna_A Conserved hypothetical 99.2 1.1E-09 3.9E-14 106.0 20.8 190 163-386 6-252 (357)
95 2dzn_B 26S protease regulatory 99.2 9.7E-12 3.3E-16 95.0 3.2 80 344-423 1-82 (82)
96 2qen_A Walker-type ATPase; unk 99.2 2.3E-09 7.8E-14 103.7 20.2 192 164-385 6-247 (350)
97 2wg5_A General control protein 99.1 3E-10 1E-14 90.9 10.2 101 41-162 8-108 (109)
98 2w58_A DNAI, primosome compone 99.1 8E-11 2.7E-15 105.5 6.7 102 166-275 21-127 (202)
99 2kjq_A DNAA-related protein; s 99.1 3.4E-10 1.2E-14 96.6 8.5 105 203-338 35-145 (149)
100 2qgz_A Helicase loader, putati 99.0 3.1E-10 1.1E-14 108.8 5.6 101 167-275 121-226 (308)
101 4akg_A Glutathione S-transfera 98.9 3.3E-08 1.1E-12 116.9 20.4 165 205-391 646-840 (2695)
102 2vhj_A Ntpase P4, P4; non- hyd 98.9 2.3E-10 7.9E-15 108.8 1.6 121 200-326 119-242 (331)
103 2r2a_A Uncharacterized protein 98.8 4.2E-09 1.4E-13 94.2 6.0 126 206-343 7-155 (199)
104 3vkg_A Dynein heavy chain, cyt 98.8 1.2E-07 4.2E-12 112.8 17.8 172 204-389 1304-1525(3245)
105 1tue_A Replication protein E1; 98.7 8.2E-09 2.8E-13 91.7 5.9 115 200-341 54-179 (212)
106 3h43_A Proteasome-activating n 98.7 1.1E-07 3.8E-12 72.2 9.4 76 54-150 2-77 (85)
107 1jr3_D DNA polymerase III, del 98.6 3.8E-07 1.3E-11 88.3 12.8 175 204-411 18-209 (343)
108 3cmu_A Protein RECA, recombina 98.6 1E-07 3.5E-12 109.5 10.0 116 201-316 1424-1561(2050)
109 3vkg_A Dynein heavy chain, cyt 98.5 4.2E-07 1.4E-11 108.4 13.5 124 206-350 606-749 (3245)
110 1u0j_A DNA replication protein 98.5 1.7E-07 5.7E-12 87.0 7.0 119 204-352 104-249 (267)
111 1svm_A Large T antigen; AAA+ f 98.5 7.8E-08 2.7E-12 94.2 5.0 118 200-340 165-284 (377)
112 1ye8_A Protein THEP1, hypothet 98.5 7.3E-07 2.5E-11 78.1 10.6 27 206-232 2-28 (178)
113 3m9b_A Proteasome-associated A 98.4 1.5E-06 5.2E-11 78.2 11.6 105 27-154 55-159 (251)
114 2w0m_A SSO2452; RECA, SSPF, un 98.1 1.4E-05 4.9E-10 72.1 11.4 38 200-237 19-59 (235)
115 3hr8_A Protein RECA; alpha and 98.1 3E-06 1E-10 82.2 7.0 78 200-277 57-153 (356)
116 1xp8_A RECA protein, recombina 98.1 5.6E-06 1.9E-10 80.8 8.9 78 200-277 70-166 (366)
117 2zr9_A Protein RECA, recombina 98.1 2.7E-06 9.3E-11 82.6 5.5 78 200-277 57-153 (349)
118 1z6t_A APAF-1, apoptotic prote 98.1 8.5E-05 2.9E-09 77.0 17.2 174 169-383 123-327 (591)
119 1n0w_A DNA repair protein RAD5 98.0 7.1E-06 2.4E-10 74.8 6.7 78 200-277 20-133 (243)
120 2z43_A DNA repair and recombin 98.0 7.9E-06 2.7E-10 78.5 7.3 79 200-278 103-218 (324)
121 2ehv_A Hypothetical protein PH 98.0 2.7E-05 9.3E-10 71.2 10.1 26 200-225 26-51 (251)
122 1u94_A RECA protein, recombina 98.0 6.8E-06 2.3E-10 79.9 6.2 78 200-277 59-155 (356)
123 2cvh_A DNA repair and recombin 98.0 8.7E-06 3E-10 73.0 6.6 40 200-239 16-55 (220)
124 1qhx_A CPT, protein (chloramph 98.0 1.9E-05 6.4E-10 68.4 8.0 37 204-240 3-39 (178)
125 1g41_A Heat shock protein HSLU 97.9 3.2E-05 1.1E-09 77.0 10.4 156 250-411 239-433 (444)
126 2iut_A DNA translocase FTSK; n 97.9 0.00015 5E-09 74.2 15.1 75 264-351 344-420 (574)
127 1v5w_A DMC1, meiotic recombina 97.9 1.2E-05 4E-10 78.0 6.6 79 200-278 118-234 (343)
128 3sfz_A APAF-1, apoptotic pepti 97.9 0.00019 6.6E-09 80.5 16.5 175 167-382 121-326 (1249)
129 3lda_A DNA repair protein RAD5 97.8 1.9E-05 6.6E-10 77.9 6.8 79 200-278 174-288 (400)
130 4a74_A DNA repair and recombin 97.8 1.4E-05 4.8E-10 72.1 5.0 29 200-228 21-49 (231)
131 3upu_A ATP-dependent DNA helic 97.8 3.6E-05 1.2E-09 77.5 8.4 49 166-228 20-69 (459)
132 3io5_A Recombination and repai 97.8 2E-05 6.8E-10 74.7 6.0 78 200-278 25-126 (333)
133 2orw_A Thymidine kinase; TMTK, 97.8 7.3E-06 2.5E-10 72.1 2.8 24 205-228 4-27 (184)
134 3cmu_A Protein RECA, recombina 97.8 4.1E-05 1.4E-09 88.3 9.4 79 200-278 1077-1174(2050)
135 2r8r_A Sensor protein; KDPD, P 97.8 0.00047 1.6E-08 62.2 14.3 160 206-391 8-208 (228)
136 3vaa_A Shikimate kinase, SK; s 97.8 1.3E-05 4.5E-10 71.1 3.8 34 202-235 23-56 (199)
137 2dr3_A UPF0273 protein PH0284; 97.8 9.5E-05 3.3E-09 67.3 9.7 38 200-237 19-59 (247)
138 1pzn_A RAD51, DNA repair and r 97.8 2.7E-05 9.3E-10 75.5 6.3 40 200-239 127-175 (349)
139 2a5y_B CED-4; apoptosis; HET: 97.7 0.00025 8.6E-09 73.0 13.5 169 173-381 131-334 (549)
140 3jvv_A Twitching mobility prot 97.7 5.2E-05 1.8E-09 73.7 7.8 71 203-273 122-206 (356)
141 3trf_A Shikimate kinase, SK; a 97.7 1.7E-05 5.7E-10 69.3 3.6 33 204-236 5-37 (185)
142 2i1q_A DNA repair and recombin 97.7 2.8E-05 9.6E-10 74.5 5.3 78 200-277 94-218 (322)
143 2rhm_A Putative kinase; P-loop 97.7 1.8E-05 6E-10 69.5 3.4 35 201-235 2-36 (193)
144 2b8t_A Thymidine kinase; deoxy 97.7 0.00013 4.5E-09 65.9 9.1 70 205-275 13-101 (223)
145 3cmw_A Protein RECA, recombina 97.7 3.7E-05 1.3E-09 87.7 6.2 78 200-277 728-824 (1706)
146 2p5t_B PEZT; postsegregational 97.6 0.00016 5.6E-09 66.6 9.2 39 202-240 30-68 (253)
147 1gvn_B Zeta; postsegregational 97.6 0.00013 4.5E-09 68.7 8.6 38 203-240 32-69 (287)
148 3iij_A Coilin-interacting nucl 97.6 4E-05 1.4E-09 66.6 4.3 33 203-235 10-42 (180)
149 1zp6_A Hypothetical protein AT 97.6 3.7E-05 1.3E-09 67.4 3.4 40 201-240 6-45 (191)
150 2zts_A Putative uncharacterize 97.5 0.00037 1.3E-08 63.4 10.2 38 200-237 26-67 (251)
151 3kb2_A SPBC2 prophage-derived 97.5 5.1E-05 1.7E-09 65.1 3.9 31 206-236 3-33 (173)
152 1y63_A LMAJ004144AAA protein; 97.5 4.5E-05 1.5E-09 66.7 3.4 31 204-234 10-41 (184)
153 2iyv_A Shikimate kinase, SK; t 97.5 5.3E-05 1.8E-09 66.0 3.9 30 206-235 4-33 (184)
154 1kag_A SKI, shikimate kinase I 97.5 6.5E-05 2.2E-09 64.6 4.4 30 204-233 4-33 (173)
155 2i3b_A HCR-ntpase, human cance 97.5 0.00031 1.1E-08 61.8 8.9 23 206-228 3-25 (189)
156 2ius_A DNA translocase FTSK; n 97.5 0.00052 1.8E-08 69.5 11.5 74 265-351 299-374 (512)
157 1via_A Shikimate kinase; struc 97.5 5.3E-05 1.8E-09 65.5 3.7 29 206-234 6-34 (175)
158 1nlf_A Regulatory protein REPA 97.5 0.00012 4.1E-09 68.5 5.9 29 200-228 26-54 (279)
159 2r6a_A DNAB helicase, replicat 97.5 0.00044 1.5E-08 69.4 10.3 38 200-237 199-240 (454)
160 3e1s_A Exodeoxyribonuclease V, 97.4 0.00017 5.7E-09 74.6 7.2 32 205-236 205-239 (574)
161 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00022 7.5E-09 66.1 7.3 38 204-241 4-44 (260)
162 1g5t_A COB(I)alamin adenosyltr 97.4 0.0011 3.6E-08 58.5 11.3 117 205-339 29-178 (196)
163 1zuh_A Shikimate kinase; alpha 97.4 7.1E-05 2.4E-09 64.2 3.5 31 205-235 8-38 (168)
164 2cdn_A Adenylate kinase; phosp 97.4 8.5E-05 2.9E-09 65.8 3.9 31 205-235 21-51 (201)
165 2c95_A Adenylate kinase 1; tra 97.4 7.7E-05 2.6E-09 65.5 3.5 33 203-235 8-40 (196)
166 2q6t_A DNAB replication FORK h 97.4 0.00027 9.3E-09 70.7 7.9 38 200-237 196-237 (444)
167 2ze6_A Isopentenyl transferase 97.4 9.2E-05 3.1E-09 68.4 4.0 32 206-237 3-34 (253)
168 3bh0_A DNAB-like replicative h 97.4 0.00036 1.2E-08 66.5 8.4 38 200-237 64-104 (315)
169 1aky_A Adenylate kinase; ATP:A 97.4 8.6E-05 3E-09 66.8 3.7 33 203-235 3-35 (220)
170 3t61_A Gluconokinase; PSI-biol 97.4 0.00012 4E-09 64.9 4.4 32 204-235 18-49 (202)
171 2eyu_A Twitching motility prot 97.4 0.00011 3.7E-09 68.3 4.3 72 202-273 23-108 (261)
172 1tev_A UMP-CMP kinase; ploop, 97.4 7.7E-05 2.6E-09 65.2 3.0 36 204-241 3-38 (196)
173 3dm5_A SRP54, signal recogniti 97.4 0.00088 3E-08 66.6 10.9 73 203-275 99-194 (443)
174 1e6c_A Shikimate kinase; phosp 97.4 0.00011 3.6E-09 63.2 3.8 30 205-234 3-32 (173)
175 1zd8_A GTP:AMP phosphotransfer 97.4 8.3E-05 2.8E-09 67.3 3.2 33 203-235 6-38 (227)
176 3umf_A Adenylate kinase; rossm 97.3 0.00011 3.8E-09 66.2 3.9 40 202-243 27-66 (217)
177 3lw7_A Adenylate kinase relate 97.3 9.3E-05 3.2E-09 63.3 3.3 29 206-235 3-31 (179)
178 2fz4_A DNA repair protein RAD2 97.3 0.00079 2.7E-08 61.4 9.5 36 206-241 110-146 (237)
179 3cm0_A Adenylate kinase; ATP-b 97.3 9.8E-05 3.3E-09 64.3 3.1 35 205-241 5-39 (186)
180 1vma_A Cell division protein F 97.3 0.0019 6.5E-08 61.2 12.2 73 202-274 102-197 (306)
181 2vli_A Antibiotic resistance p 97.3 0.00011 3.7E-09 63.8 3.3 30 204-233 5-34 (183)
182 1kht_A Adenylate kinase; phosp 97.3 9.8E-05 3.4E-09 64.4 2.8 25 205-229 4-28 (192)
183 2bwj_A Adenylate kinase 5; pho 97.3 0.00011 3.9E-09 64.5 3.3 36 204-241 12-47 (199)
184 3kl4_A SRP54, signal recogniti 97.3 0.00055 1.9E-08 68.0 8.4 197 203-413 96-342 (433)
185 3be4_A Adenylate kinase; malar 97.3 0.0001 3.6E-09 66.2 2.9 31 205-235 6-36 (217)
186 2pt5_A Shikimate kinase, SK; a 97.3 0.00014 4.9E-09 62.1 3.6 29 206-234 2-30 (168)
187 1qf9_A UMP/CMP kinase, protein 97.3 0.00013 4.4E-09 63.7 3.3 32 204-235 6-37 (194)
188 3tlx_A Adenylate kinase 2; str 97.3 0.00012 4.3E-09 67.0 3.3 33 203-235 28-60 (243)
189 3dl0_A Adenylate kinase; phosp 97.3 0.00013 4.5E-09 65.2 3.4 30 206-235 2-31 (216)
190 1ak2_A Adenylate kinase isoenz 97.3 0.00015 5.3E-09 65.8 3.8 32 204-235 16-47 (233)
191 3fb4_A Adenylate kinase; psych 97.3 0.00014 4.8E-09 65.0 3.5 30 206-235 2-31 (216)
192 4eun_A Thermoresistant glucoki 97.2 0.0002 6.8E-09 63.4 4.4 36 203-240 28-63 (200)
193 1knq_A Gluconate kinase; ALFA/ 97.2 0.00016 5.4E-09 62.4 3.5 31 204-234 8-38 (175)
194 1ly1_A Polynucleotide kinase; 97.2 0.00011 3.8E-09 63.4 2.5 33 205-239 3-36 (181)
195 1ukz_A Uridylate kinase; trans 97.2 0.00014 4.9E-09 64.3 3.1 31 205-235 16-46 (203)
196 2ewv_A Twitching motility prot 97.2 0.00015 5.2E-09 70.8 3.5 74 200-273 132-219 (372)
197 1zak_A Adenylate kinase; ATP:A 97.2 0.00018 6.1E-09 64.8 3.7 37 203-241 4-40 (222)
198 2pez_A Bifunctional 3'-phospho 97.2 0.00021 7.1E-09 62.0 4.0 37 203-239 4-43 (179)
199 3sr0_A Adenylate kinase; phosp 97.2 0.00025 8.7E-09 63.3 4.0 34 207-242 3-36 (206)
200 1nks_A Adenylate kinase; therm 97.1 0.00023 7.9E-09 62.0 3.7 35 206-240 3-40 (194)
201 3uie_A Adenylyl-sulfate kinase 97.1 0.00026 8.8E-09 62.7 4.0 38 203-240 24-64 (200)
202 4gp7_A Metallophosphoesterase; 97.1 0.00017 5.8E-09 62.3 2.7 21 203-223 8-28 (171)
203 1ex7_A Guanylate kinase; subst 97.1 0.00048 1.7E-08 60.4 5.6 24 205-228 2-25 (186)
204 2ixe_A Antigen peptide transpo 97.1 0.0016 5.6E-08 60.6 9.4 27 202-228 43-69 (271)
205 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00013 4.5E-09 70.3 1.6 29 206-234 26-54 (359)
206 3crm_A TRNA delta(2)-isopenten 97.1 0.00024 8.2E-09 67.7 3.4 33 205-237 6-38 (323)
207 1e4v_A Adenylate kinase; trans 97.1 0.00025 8.7E-09 63.4 3.3 30 206-235 2-31 (214)
208 2v54_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 61.8 4.0 34 203-236 3-37 (204)
209 1cke_A CK, MSSA, protein (cyti 97.1 0.00038 1.3E-08 62.6 4.4 29 205-233 6-34 (227)
210 3nwj_A ATSK2; P loop, shikimat 97.1 0.00028 9.7E-09 65.0 3.4 32 204-235 48-79 (250)
211 2pbr_A DTMP kinase, thymidylat 97.1 0.00042 1.5E-08 60.4 4.4 30 207-236 3-35 (195)
212 1vt4_I APAF-1 related killer D 97.0 0.008 2.7E-07 65.6 14.8 43 173-227 131-173 (1221)
213 2jaq_A Deoxyguanosine kinase; 97.0 0.00038 1.3E-08 61.3 3.9 29 206-234 2-30 (205)
214 2bbw_A Adenylate kinase 4, AK4 97.0 0.00041 1.4E-08 63.5 4.1 30 204-233 27-56 (246)
215 2xb4_A Adenylate kinase; ATP-b 97.0 0.00045 1.5E-08 62.3 4.1 34 206-241 2-35 (223)
216 1vpl_A ABC transporter, ATP-bi 97.0 0.0027 9.2E-08 58.6 9.4 27 202-228 39-65 (256)
217 4g1u_C Hemin import ATP-bindin 97.0 0.0014 4.9E-08 60.8 7.5 27 202-228 35-61 (266)
218 2if2_A Dephospho-COA kinase; a 97.0 0.00033 1.1E-08 62.0 3.0 29 206-235 3-31 (204)
219 3bgw_A DNAB-like replicative h 97.0 0.0012 4E-08 66.1 7.3 38 200-237 193-233 (444)
220 3gfo_A Cobalt import ATP-bindi 97.0 0.0013 4.6E-08 61.3 7.2 27 202-228 32-58 (275)
221 4a1f_A DNAB helicase, replicat 97.0 0.0021 7.3E-08 61.7 8.8 38 200-237 42-82 (338)
222 3foz_A TRNA delta(2)-isopenten 96.9 0.0012 4.3E-08 62.2 6.8 34 204-237 10-43 (316)
223 2xau_A PRE-mRNA-splicing facto 96.9 0.0025 8.5E-08 68.2 10.0 63 165-227 70-132 (773)
224 2z0h_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 59.8 4.3 30 207-236 3-35 (197)
225 1t6n_A Probable ATP-dependent 96.9 0.024 8.2E-07 50.3 15.1 24 204-227 51-74 (220)
226 2qor_A Guanylate kinase; phosp 96.9 0.00052 1.8E-08 60.9 4.0 28 202-229 10-37 (204)
227 3r20_A Cytidylate kinase; stru 96.9 0.00055 1.9E-08 62.2 4.2 30 204-233 9-38 (233)
228 3u06_A Protein claret segregat 96.9 0.0032 1.1E-07 62.0 9.9 17 205-221 140-156 (412)
229 3tui_C Methionine import ATP-b 96.9 0.0012 4.3E-08 63.9 6.9 27 202-228 52-78 (366)
230 3b6e_A Interferon-induced heli 96.9 0.0039 1.3E-07 55.0 9.7 24 205-228 49-72 (216)
231 2wwf_A Thymidilate kinase, put 96.9 0.00024 8.3E-09 63.1 1.4 29 203-231 9-37 (212)
232 3a8t_A Adenylate isopentenyltr 96.9 0.00034 1.2E-08 67.0 2.4 34 205-238 41-74 (339)
233 2grj_A Dephospho-COA kinase; T 96.9 0.0005 1.7E-08 60.6 3.3 36 206-243 14-49 (192)
234 1tf7_A KAIC; homohexamer, hexa 96.9 0.0028 9.6E-08 64.8 9.3 97 200-302 277-404 (525)
235 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00038 1.3E-08 66.8 2.6 72 203-274 170-251 (330)
236 2plr_A DTMP kinase, probable t 96.9 0.00074 2.5E-08 59.7 4.3 27 205-231 5-31 (213)
237 1kgd_A CASK, peripheral plasma 96.8 0.0006 2E-08 59.3 3.5 26 204-229 5-30 (180)
238 1q57_A DNA primase/helicase; d 96.8 0.0012 4.2E-08 67.0 6.4 38 200-237 238-279 (503)
239 2gxq_A Heat resistant RNA depe 96.8 0.0048 1.6E-07 54.2 9.5 24 204-227 38-62 (207)
240 3exa_A TRNA delta(2)-isopenten 96.8 0.0018 6.1E-08 61.3 6.9 32 206-237 5-36 (322)
241 1nn5_A Similar to deoxythymidy 96.8 0.00029 9.8E-09 62.7 1.4 27 203-229 8-34 (215)
242 3ake_A Cytidylate kinase; CMP 96.8 0.00077 2.6E-08 59.5 4.1 30 206-235 4-33 (208)
243 3nh6_A ATP-binding cassette SU 96.8 0.0021 7.2E-08 60.9 7.2 27 202-228 78-104 (306)
244 1jjv_A Dephospho-COA kinase; P 96.8 0.0006 2.1E-08 60.4 3.3 27 206-233 4-30 (206)
245 2yvu_A Probable adenylyl-sulfa 96.8 0.00084 2.9E-08 58.4 4.1 37 203-239 12-51 (186)
246 1uj2_A Uridine-cytidine kinase 96.8 0.0008 2.7E-08 61.8 4.1 39 204-242 22-68 (252)
247 1uf9_A TT1252 protein; P-loop, 96.8 0.00057 2E-08 60.1 2.9 36 204-242 8-43 (203)
248 4e22_A Cytidylate kinase; P-lo 96.8 0.00093 3.2E-08 61.5 4.4 30 204-233 27-56 (252)
249 2yhs_A FTSY, cell division pro 96.8 0.011 3.8E-07 59.4 12.4 27 202-228 291-317 (503)
250 1rz3_A Hypothetical protein rb 96.8 0.0022 7.5E-08 56.7 6.6 36 203-238 21-59 (201)
251 2it1_A 362AA long hypothetical 96.8 0.0021 7.3E-08 62.3 6.9 27 202-228 27-53 (362)
252 3llm_A ATP-dependent RNA helic 96.7 0.005 1.7E-07 55.7 9.0 22 204-225 76-97 (235)
253 2j41_A Guanylate kinase; GMP, 96.7 0.00068 2.3E-08 59.8 3.0 27 202-228 4-30 (207)
254 2px0_A Flagellar biosynthesis 96.7 0.0042 1.4E-07 58.6 8.6 36 203-238 104-143 (296)
255 3thx_B DNA mismatch repair pro 96.7 0.0034 1.2E-07 68.0 8.9 24 203-226 672-695 (918)
256 1vht_A Dephospho-COA kinase; s 96.7 0.00073 2.5E-08 60.4 3.2 30 204-234 4-33 (218)
257 2qt1_A Nicotinamide riboside k 96.7 0.00051 1.7E-08 61.0 2.1 30 204-233 21-51 (207)
258 3tau_A Guanylate kinase, GMP k 96.7 0.00076 2.6E-08 60.1 3.2 27 203-229 7-33 (208)
259 4etp_A Kinesin-like protein KA 96.7 0.0085 2.9E-07 58.9 10.9 17 205-221 142-158 (403)
260 2yyz_A Sugar ABC transporter, 96.7 0.0022 7.7E-08 62.1 6.7 27 202-228 27-53 (359)
261 1m7g_A Adenylylsulfate kinase; 96.7 0.00085 2.9E-08 59.8 3.4 39 202-240 23-65 (211)
262 1lvg_A Guanylate kinase, GMP k 96.7 0.00086 2.9E-08 59.3 3.4 27 203-229 3-29 (198)
263 3rlf_A Maltose/maltodextrin im 96.7 0.0021 7.1E-08 62.7 6.4 27 202-228 27-53 (381)
264 2h92_A Cytidylate kinase; ross 96.7 0.0011 3.6E-08 59.3 3.8 30 205-234 4-33 (219)
265 1tf7_A KAIC; homohexamer, hexa 96.7 0.0056 1.9E-07 62.5 9.7 112 201-321 36-187 (525)
266 3tr0_A Guanylate kinase, GMP k 96.7 0.00099 3.4E-08 58.7 3.5 27 203-229 6-32 (205)
267 3eph_A TRNA isopentenyltransfe 96.6 0.0023 7.9E-08 62.6 6.2 32 205-236 3-34 (409)
268 1q3t_A Cytidylate kinase; nucl 96.6 0.0014 4.9E-08 59.4 4.4 32 203-234 15-46 (236)
269 1w4r_A Thymidine kinase; type 96.6 0.0013 4.4E-08 57.8 3.9 33 205-237 21-56 (195)
270 3d3q_A TRNA delta(2)-isopenten 96.6 0.001 3.4E-08 63.9 3.3 32 205-236 8-39 (340)
271 1w36_D RECD, exodeoxyribonucle 96.6 0.0053 1.8E-07 63.8 8.9 24 205-228 165-188 (608)
272 2qmh_A HPR kinase/phosphorylas 96.6 0.00091 3.1E-08 59.0 2.5 32 204-236 34-65 (205)
273 1qde_A EIF4A, translation init 96.6 0.014 4.9E-07 51.9 10.6 24 204-227 51-75 (224)
274 4b3f_X DNA-binding protein smu 96.5 0.0087 3E-07 62.7 10.2 33 206-238 207-242 (646)
275 1z6g_A Guanylate kinase; struc 96.5 0.0014 4.8E-08 58.9 3.6 27 202-228 21-47 (218)
276 2bdt_A BH3686; alpha-beta prot 96.5 0.0016 5.4E-08 56.7 3.9 33 206-239 4-36 (189)
277 3a00_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 57.2 3.4 25 205-229 2-26 (186)
278 2f6r_A COA synthase, bifunctio 96.5 0.0011 3.9E-08 62.0 2.9 33 205-240 76-108 (281)
279 1zu4_A FTSY; GTPase, signal re 96.5 0.0048 1.6E-07 58.8 7.2 36 202-237 103-141 (320)
280 1htw_A HI0065; nucleotide-bind 96.5 0.0015 5.1E-08 55.6 3.3 29 200-228 29-57 (158)
281 2v3c_C SRP54, signal recogniti 96.4 0.0088 3E-07 59.4 9.2 36 203-238 98-136 (432)
282 3zvl_A Bifunctional polynucleo 96.4 0.0025 8.5E-08 63.2 5.2 30 204-233 258-287 (416)
283 2pl3_A Probable ATP-dependent 96.4 0.011 3.8E-07 53.2 9.2 19 204-222 62-80 (236)
284 3ney_A 55 kDa erythrocyte memb 96.4 0.0023 7.9E-08 56.5 4.4 27 203-229 18-44 (197)
285 3asz_A Uridine kinase; cytidin 96.4 0.0012 4E-08 58.7 2.4 27 203-229 5-31 (211)
286 1xx6_A Thymidine kinase; NESG, 96.4 0.0052 1.8E-07 54.0 6.4 69 205-275 9-93 (191)
287 3thx_A DNA mismatch repair pro 96.4 0.0086 2.9E-07 65.1 9.4 22 205-226 663-684 (934)
288 3c8u_A Fructokinase; YP_612366 96.4 0.0016 5.5E-08 57.9 3.2 27 203-229 21-47 (208)
289 2oap_1 GSPE-2, type II secreti 96.4 0.0014 4.8E-08 66.7 3.0 71 203-273 259-343 (511)
290 1ltq_A Polynucleotide kinase; 96.4 0.0014 4.8E-08 61.6 2.8 34 205-240 3-37 (301)
291 3iuy_A Probable ATP-dependent 96.4 0.012 3.9E-07 52.8 8.8 19 204-222 57-75 (228)
292 2v9p_A Replication protein E1; 96.4 0.002 6.9E-08 60.9 3.7 33 200-232 122-154 (305)
293 1cr0_A DNA primase/helicase; R 96.4 0.0027 9.2E-08 59.6 4.7 37 200-236 31-71 (296)
294 3qf4_B Uncharacterized ABC tra 96.4 0.011 3.9E-07 61.2 9.8 28 201-228 378-405 (598)
295 1vec_A ATP-dependent RNA helic 96.3 0.025 8.6E-07 49.5 10.8 19 204-222 40-58 (206)
296 3ice_A Transcription terminati 96.3 0.025 8.4E-07 55.0 11.2 116 203-319 173-325 (422)
297 2va8_A SSO2462, SKI2-type heli 96.3 0.015 5.1E-07 61.6 10.6 22 202-223 44-65 (715)
298 2axn_A 6-phosphofructo-2-kinas 96.3 0.0071 2.4E-07 61.6 7.7 37 205-241 36-75 (520)
299 1j8m_F SRP54, signal recogniti 96.3 0.0089 3E-07 56.3 7.9 71 204-274 98-191 (297)
300 3e70_C DPA, signal recognition 96.3 0.0048 1.7E-07 59.0 6.0 27 202-228 127-153 (328)
301 3fdi_A Uncharacterized protein 96.3 0.0025 8.5E-08 56.5 3.8 29 206-234 8-36 (201)
302 3qf4_A ABC transporter, ATP-bi 96.3 0.012 4E-07 61.0 9.4 28 201-228 366-393 (587)
303 1hv8_A Putative ATP-dependent 96.3 0.009 3.1E-07 57.1 8.0 23 205-227 45-67 (367)
304 1znw_A Guanylate kinase, GMP k 96.3 0.0021 7.3E-08 57.0 3.3 28 202-229 18-45 (207)
305 1s96_A Guanylate kinase, GMP k 96.3 0.0022 7.7E-08 57.6 3.4 28 202-229 14-41 (219)
306 2xxa_A Signal recognition part 96.2 0.0077 2.6E-07 59.8 7.3 72 203-274 99-194 (433)
307 4a82_A Cystic fibrosis transme 96.2 0.011 3.7E-07 61.1 8.7 28 201-228 364-391 (578)
308 3b9q_A Chloroplast SRP recepto 96.2 0.0032 1.1E-07 59.5 4.2 27 202-228 98-124 (302)
309 2j37_W Signal recognition part 96.2 0.0071 2.4E-07 61.2 6.8 35 203-237 100-137 (504)
310 1ls1_A Signal recognition part 96.1 0.034 1.2E-06 52.2 11.1 72 203-274 97-191 (295)
311 1wb9_A DNA mismatch repair pro 96.1 0.018 6.1E-07 61.7 10.1 24 204-227 607-630 (800)
312 2ffh_A Protein (FFH); SRP54, s 96.1 0.017 5.7E-07 57.2 9.1 72 203-274 97-191 (425)
313 1q0u_A Bstdead; DEAD protein, 96.1 0.0092 3.1E-07 53.1 6.6 18 205-222 42-59 (219)
314 3b5x_A Lipid A export ATP-bind 96.1 0.019 6.4E-07 59.4 9.8 28 201-228 366-393 (582)
315 2jeo_A Uridine-cytidine kinase 96.1 0.0027 9.3E-08 57.9 3.1 29 203-231 24-52 (245)
316 2og2_A Putative signal recogni 96.0 0.0036 1.2E-07 60.6 3.8 27 202-228 155-181 (359)
317 3gmt_A Adenylate kinase; ssgci 96.0 0.0039 1.3E-07 56.4 3.8 35 206-242 10-44 (230)
318 3ber_A Probable ATP-dependent 96.0 0.024 8.1E-07 51.7 9.0 19 204-222 80-98 (249)
319 3lnc_A Guanylate kinase, GMP k 96.0 0.0017 6E-08 58.6 1.3 27 202-228 25-52 (231)
320 1a7j_A Phosphoribulokinase; tr 96.0 0.0034 1.2E-07 59.0 3.2 37 205-241 6-45 (290)
321 1c9k_A COBU, adenosylcobinamid 96.0 0.0035 1.2E-07 54.4 3.0 32 207-239 2-33 (180)
322 3bor_A Human initiation factor 96.0 0.0094 3.2E-07 53.9 6.1 19 204-222 67-85 (237)
323 1odf_A YGR205W, hypothetical 3 95.9 0.0062 2.1E-07 57.2 4.9 27 203-229 30-56 (290)
324 2zj8_A DNA helicase, putative 95.9 0.017 5.7E-07 61.3 8.8 20 203-222 38-57 (720)
325 1x6v_B Bifunctional 3'-phospho 95.9 0.0042 1.4E-07 64.4 3.9 36 204-239 52-90 (630)
326 4eaq_A DTMP kinase, thymidylat 95.9 0.0042 1.4E-07 56.2 3.4 32 204-235 26-59 (229)
327 4f4c_A Multidrug resistance pr 95.9 0.015 5.2E-07 65.8 8.5 28 201-228 441-468 (1321)
328 1s2m_A Putative ATP-dependent 95.8 0.03 1E-06 54.4 9.5 21 205-225 59-79 (400)
329 1xti_A Probable ATP-dependent 95.8 0.099 3.4E-06 50.3 13.2 23 204-226 45-67 (391)
330 2oxc_A Probable ATP-dependent 95.8 0.053 1.8E-06 48.5 10.4 18 204-221 61-78 (230)
331 3fmo_B ATP-dependent RNA helic 95.8 0.023 7.8E-07 53.5 8.2 19 203-221 130-148 (300)
332 1gtv_A TMK, thymidylate kinase 95.8 0.0018 6.3E-08 57.4 0.5 24 206-229 2-25 (214)
333 2j9r_A Thymidine kinase; TK1, 95.8 0.02 6.7E-07 51.1 7.1 30 207-236 31-63 (214)
334 3tbk_A RIG-I helicase domain; 95.8 0.11 3.7E-06 52.5 13.8 23 205-227 20-42 (555)
335 3fe2_A Probable ATP-dependent 95.8 0.032 1.1E-06 50.4 8.8 19 204-222 66-84 (242)
336 3pey_A ATP-dependent RNA helic 95.7 0.032 1.1E-06 53.7 9.3 21 204-224 44-64 (395)
337 3j16_B RLI1P; ribosome recycli 95.7 0.019 6.5E-07 59.5 7.9 26 203-228 102-127 (608)
338 1np6_A Molybdopterin-guanine d 95.7 0.0059 2E-07 52.8 3.5 25 204-228 6-30 (174)
339 3hdt_A Putative kinase; struct 95.7 0.0061 2.1E-07 54.9 3.7 29 206-234 16-44 (223)
340 2o8b_B DNA mismatch repair pro 95.7 0.033 1.1E-06 61.2 10.1 21 205-225 790-810 (1022)
341 2z0m_A 337AA long hypothetical 95.7 0.025 8.5E-07 53.3 8.1 32 205-236 32-63 (337)
342 1sky_E F1-ATPase, F1-ATP synth 95.7 0.098 3.3E-06 52.2 12.5 25 204-228 151-175 (473)
343 4f4c_A Multidrug resistance pr 95.7 0.022 7.6E-07 64.5 8.7 28 201-228 1102-1129(1321)
344 2v6i_A RNA helicase; membrane, 95.6 0.041 1.4E-06 54.5 9.7 21 205-225 3-24 (431)
345 3aez_A Pantothenate kinase; tr 95.6 0.0057 2E-07 58.1 3.2 28 202-229 88-115 (312)
346 1rj9_A FTSY, signal recognitio 95.6 0.0061 2.1E-07 57.7 3.3 26 203-228 101-126 (304)
347 2i4i_A ATP-dependent RNA helic 95.6 0.076 2.6E-06 51.7 11.3 18 204-221 52-69 (417)
348 3ly5_A ATP-dependent RNA helic 95.5 0.029 9.8E-07 51.6 7.7 18 205-222 92-109 (262)
349 3tqc_A Pantothenate kinase; bi 95.5 0.011 3.6E-07 56.4 4.8 25 205-229 93-117 (321)
350 3ozx_A RNAse L inhibitor; ATP 95.5 0.019 6.6E-07 58.6 7.0 23 206-228 27-49 (538)
351 2cbz_A Multidrug resistance-as 95.5 0.0038 1.3E-07 56.8 1.5 27 202-228 29-55 (237)
352 3tif_A Uncharacterized ABC tra 95.5 0.0048 1.6E-07 56.1 2.2 27 202-228 29-55 (235)
353 1ewq_A DNA mismatch repair pro 95.5 0.035 1.2E-06 59.0 9.1 23 205-227 577-599 (765)
354 3tqf_A HPR(Ser) kinase; transf 95.5 0.0053 1.8E-07 52.8 2.2 24 204-227 16-39 (181)
355 3ozx_A RNAse L inhibitor; ATP 95.5 0.026 8.9E-07 57.7 7.8 27 202-228 292-318 (538)
356 1sq5_A Pantothenate kinase; P- 95.5 0.011 3.7E-07 56.0 4.6 26 204-229 80-105 (308)
357 1p9r_A General secretion pathw 95.5 0.013 4.6E-07 57.8 5.4 26 204-229 167-192 (418)
358 1bif_A 6-phosphofructo-2-kinas 95.5 0.026 8.9E-07 56.6 7.6 33 204-236 39-74 (469)
359 2j0s_A ATP-dependent RNA helic 95.5 0.064 2.2E-06 52.2 10.3 21 204-224 74-94 (410)
360 3p32_A Probable GTPase RV1496/ 95.4 0.027 9.4E-07 54.3 7.4 25 204-228 79-103 (355)
361 3dkp_A Probable ATP-dependent 95.4 0.021 7.3E-07 51.6 6.3 18 204-221 66-83 (245)
362 2pcj_A ABC transporter, lipopr 95.4 0.0045 1.5E-07 55.8 1.6 27 202-228 28-54 (224)
363 1wrb_A DJVLGB; RNA helicase, D 95.4 0.03 1E-06 50.9 7.2 18 205-222 61-78 (253)
364 3fmp_B ATP-dependent RNA helic 95.4 0.056 1.9E-06 54.1 9.7 19 203-221 130-148 (479)
365 2qm8_A GTPase/ATPase; G protei 95.4 0.031 1.1E-06 53.5 7.5 27 202-228 53-79 (337)
366 1xjc_A MOBB protein homolog; s 95.4 0.009 3.1E-07 51.3 3.2 24 205-228 5-28 (169)
367 1m8p_A Sulfate adenylyltransfe 95.3 0.0079 2.7E-07 62.0 3.3 35 205-239 397-435 (573)
368 1sgw_A Putative ABC transporte 95.3 0.006 2E-07 54.6 2.0 27 202-228 33-59 (214)
369 3eiq_A Eukaryotic initiation f 95.3 0.045 1.5E-06 53.2 8.6 20 204-223 77-96 (414)
370 3kta_A Chromosome segregation 95.3 0.0094 3.2E-07 51.3 3.3 25 205-229 27-51 (182)
371 1b0u_A Histidine permease; ABC 95.3 0.0066 2.2E-07 56.1 2.3 27 202-228 30-56 (262)
372 2onk_A Molybdate/tungstate ABC 95.3 0.006 2E-07 55.6 1.9 27 201-228 22-48 (240)
373 2iw3_A Elongation factor 3A; a 95.3 0.019 6.5E-07 62.4 6.1 25 202-226 459-483 (986)
374 3b85_A Phosphate starvation-in 95.2 0.007 2.4E-07 53.9 2.2 24 204-227 22-45 (208)
375 2zu0_C Probable ATP-dependent 95.2 0.0085 2.9E-07 55.5 2.8 26 202-227 44-69 (267)
376 3fvq_A Fe(3+) IONS import ATP- 95.2 0.0064 2.2E-07 58.8 1.9 27 202-228 28-54 (359)
377 2olj_A Amino acid ABC transpor 95.1 0.0077 2.6E-07 55.7 2.3 27 202-228 48-74 (263)
378 2ghi_A Transport protein; mult 95.1 0.0076 2.6E-07 55.6 2.2 27 202-228 44-70 (260)
379 1g6h_A High-affinity branched- 95.1 0.0053 1.8E-07 56.6 1.2 27 202-228 31-57 (257)
380 2ocp_A DGK, deoxyguanosine kin 95.1 0.011 3.7E-07 53.6 3.3 25 205-229 3-27 (241)
381 1mv5_A LMRA, multidrug resista 95.1 0.0066 2.2E-07 55.4 1.7 27 202-228 26-52 (243)
382 3l9o_A ATP-dependent RNA helic 95.1 0.044 1.5E-06 60.9 8.5 23 204-226 199-221 (1108)
383 2d2e_A SUFC protein; ABC-ATPas 95.1 0.008 2.7E-07 55.1 2.2 26 202-227 27-52 (250)
384 2p6r_A Afuhel308 helicase; pro 95.1 0.019 6.5E-07 60.7 5.4 19 204-222 40-58 (702)
385 2pze_A Cystic fibrosis transme 95.1 0.0071 2.4E-07 54.7 1.7 27 202-228 32-58 (229)
386 2ff7_A Alpha-hemolysin translo 95.0 0.007 2.4E-07 55.4 1.7 27 202-228 33-59 (247)
387 2gk6_A Regulator of nonsense t 95.0 0.019 6.6E-07 59.8 5.1 23 206-228 197-219 (624)
388 1ji0_A ABC transporter; ATP bi 95.0 0.0073 2.5E-07 55.0 1.7 27 202-228 30-56 (240)
389 2gza_A Type IV secretion syste 95.0 0.0097 3.3E-07 57.7 2.7 72 202-273 173-262 (361)
390 2yz2_A Putative ABC transporte 95.0 0.0087 3E-07 55.4 2.2 27 202-228 31-57 (266)
391 3tmk_A Thymidylate kinase; pho 95.0 0.022 7.4E-07 51.0 4.7 29 204-232 5-33 (216)
392 3fht_A ATP-dependent RNA helic 95.0 0.047 1.6E-06 53.0 7.6 18 204-221 64-81 (412)
393 3cr8_A Sulfate adenylyltranfer 95.0 0.0067 2.3E-07 62.1 1.5 39 203-241 368-410 (552)
394 2qi9_C Vitamin B12 import ATP- 95.0 0.0077 2.6E-07 55.2 1.7 27 202-228 24-50 (249)
395 1p5z_B DCK, deoxycytidine kina 95.0 0.0049 1.7E-07 56.8 0.4 26 204-229 24-49 (263)
396 1v43_A Sugar-binding transport 94.9 0.0086 3E-07 58.2 2.1 27 202-228 35-61 (372)
397 2orv_A Thymidine kinase; TP4A 94.9 0.2 6.8E-06 45.0 10.9 31 206-236 21-54 (234)
398 4edh_A DTMP kinase, thymidylat 94.9 0.02 6.9E-07 51.1 4.4 31 205-235 7-40 (213)
399 3e2i_A Thymidine kinase; Zn-bi 94.9 0.13 4.5E-06 45.7 9.5 30 206-235 30-62 (219)
400 1z47_A CYSA, putative ABC-tran 94.9 0.0076 2.6E-07 58.2 1.5 27 202-228 39-65 (355)
401 4a2p_A RIG-I, retinoic acid in 94.9 0.25 8.7E-06 49.9 13.1 23 205-227 23-45 (556)
402 2ykg_A Probable ATP-dependent 94.9 0.084 2.9E-06 55.4 9.6 22 205-226 29-50 (696)
403 3i5x_A ATP-dependent RNA helic 94.8 0.2 6.8E-06 51.1 12.2 18 204-221 111-128 (563)
404 1wp9_A ATP-dependent RNA helic 94.8 0.1 3.5E-06 51.4 9.8 32 206-237 25-60 (494)
405 2fwr_A DNA repair protein RAD2 94.8 0.026 8.9E-07 56.4 5.4 34 205-238 109-142 (472)
406 2ihy_A ABC transporter, ATP-bi 94.8 0.0088 3E-07 55.8 1.7 27 202-228 45-71 (279)
407 2nq2_C Hypothetical ABC transp 94.8 0.0087 3E-07 55.0 1.7 27 202-228 29-55 (253)
408 3g5u_A MCG1178, multidrug resi 94.8 0.065 2.2E-06 60.5 9.0 28 201-228 413-440 (1284)
409 3v9p_A DTMP kinase, thymidylat 94.8 0.015 5.1E-07 52.5 3.1 24 205-228 26-49 (227)
410 4i1u_A Dephospho-COA kinase; s 94.8 0.016 5.6E-07 51.5 3.3 31 205-236 10-40 (210)
411 3sop_A Neuronal-specific septi 94.7 0.013 4.4E-07 54.4 2.7 23 206-228 4-26 (270)
412 2ged_A SR-beta, signal recogni 94.7 0.03 1E-06 48.2 4.9 26 203-228 47-72 (193)
413 3ux8_A Excinuclease ABC, A sub 94.7 0.054 1.8E-06 56.9 7.7 23 202-224 346-368 (670)
414 3lxw_A GTPase IMAP family memb 94.7 0.039 1.3E-06 50.2 5.8 23 205-227 22-44 (247)
415 1g29_1 MALK, maltose transport 94.7 0.009 3.1E-07 58.1 1.5 27 202-228 27-53 (372)
416 3d31_A Sulfate/molybdate ABC t 94.7 0.0072 2.5E-07 58.2 0.8 27 202-228 24-50 (348)
417 3fho_A ATP-dependent RNA helic 94.7 0.075 2.6E-06 53.8 8.4 24 204-227 158-182 (508)
418 1g8f_A Sulfate adenylyltransfe 94.6 0.017 5.8E-07 58.4 3.5 26 205-230 396-421 (511)
419 2f9l_A RAB11B, member RAS onco 94.6 0.016 5.5E-07 50.6 2.9 22 206-227 7-28 (199)
420 2gks_A Bifunctional SAT/APS ki 94.6 0.058 2E-06 55.2 7.4 37 204-240 372-411 (546)
421 2p67_A LAO/AO transport system 94.6 0.065 2.2E-06 51.3 7.4 26 203-228 55-80 (341)
422 1oix_A RAS-related protein RAB 94.6 0.016 5.4E-07 50.4 2.8 23 206-228 31-53 (191)
423 2npi_A Protein CLP1; CLP1-PCF1 94.6 0.015 5.2E-07 58.2 3.0 29 200-228 134-162 (460)
424 3gd7_A Fusion complex of cysti 94.5 0.011 3.9E-07 57.7 1.9 26 202-227 45-70 (390)
425 1fuu_A Yeast initiation factor 94.5 0.12 4.2E-06 49.6 9.3 18 205-222 59-76 (394)
426 1nrj_B SR-beta, signal recogni 94.5 0.02 6.8E-07 50.6 3.3 25 204-228 12-36 (218)
427 4ag6_A VIRB4 ATPase, type IV s 94.5 0.033 1.1E-06 54.4 5.1 35 203-237 34-71 (392)
428 2f1r_A Molybdopterin-guanine d 94.5 0.0089 3E-07 51.5 0.9 24 206-229 4-27 (171)
429 2bbs_A Cystic fibrosis transme 94.5 0.013 4.5E-07 55.0 2.0 27 202-228 62-88 (290)
430 3vkw_A Replicase large subunit 94.4 0.028 9.6E-07 55.7 4.4 23 205-227 162-184 (446)
431 3sqw_A ATP-dependent RNA helic 94.4 0.25 8.6E-06 50.7 11.8 18 204-221 60-77 (579)
432 2wjy_A Regulator of nonsense t 94.4 0.032 1.1E-06 59.8 5.1 23 206-228 373-395 (800)
433 3lv8_A DTMP kinase, thymidylat 94.4 0.021 7.3E-07 51.8 3.2 25 204-228 27-51 (236)
434 2dyk_A GTP-binding protein; GT 94.4 0.021 7.1E-07 47.4 2.9 22 206-227 3-24 (161)
435 3k53_A Ferrous iron transport 94.4 0.027 9.4E-07 52.0 4.0 23 205-227 4-26 (271)
436 1lw7_A Transcriptional regulat 94.3 0.018 6E-07 55.9 2.6 28 204-231 170-197 (365)
437 1oxx_K GLCV, glucose, ABC tran 94.3 0.0077 2.6E-07 58.2 0.0 27 202-228 29-55 (353)
438 2pjz_A Hypothetical protein ST 94.3 0.016 5.4E-07 53.6 2.0 25 204-228 30-54 (263)
439 1z2a_A RAS-related protein RAB 94.2 0.023 7.8E-07 47.5 2.9 22 206-227 7-28 (168)
440 1f2t_A RAD50 ABC-ATPase; DNA d 94.2 0.021 7E-07 47.9 2.5 24 205-228 24-47 (149)
441 2qag_B Septin-6, protein NEDD5 94.2 0.024 8.2E-07 56.0 3.2 26 202-227 38-65 (427)
442 2db3_A ATP-dependent RNA helic 94.2 0.14 4.9E-06 50.5 9.0 18 204-221 93-110 (434)
443 1gm5_A RECG; helicase, replica 94.1 0.18 6.2E-06 53.8 10.2 35 203-237 388-425 (780)
444 2dpy_A FLII, flagellum-specifi 94.1 0.037 1.3E-06 55.0 4.6 28 203-230 156-183 (438)
445 1kao_A RAP2A; GTP-binding prot 94.1 0.025 8.7E-07 47.0 2.9 22 206-227 5-26 (167)
446 2wji_A Ferrous iron transport 94.1 0.023 8E-07 47.9 2.7 22 206-227 5-26 (165)
447 2zej_A Dardarin, leucine-rich 94.1 0.02 6.8E-07 49.3 2.2 21 206-226 4-24 (184)
448 2ce2_X GTPase HRAS; signaling 94.1 0.024 8.3E-07 47.0 2.7 22 206-227 5-26 (166)
449 3def_A T7I23.11 protein; chlor 94.1 0.068 2.3E-06 49.0 6.0 23 205-227 37-59 (262)
450 4a2q_A RIG-I, retinoic acid in 94.1 0.5 1.7E-05 50.5 13.6 24 205-228 264-287 (797)
451 3ld9_A DTMP kinase, thymidylat 94.0 0.026 8.9E-07 50.7 3.0 27 204-230 21-47 (223)
452 3h1t_A Type I site-specific re 94.0 0.042 1.4E-06 56.7 4.9 24 205-228 199-222 (590)
453 1upt_A ARL1, ADP-ribosylation 94.0 0.027 9.3E-07 47.2 2.8 24 204-227 7-30 (171)
454 2obl_A ESCN; ATPase, hydrolase 94.0 0.034 1.2E-06 53.5 3.8 29 203-231 70-98 (347)
455 2vp4_A Deoxynucleoside kinase; 94.0 0.024 8.3E-07 51.0 2.6 30 205-235 21-50 (230)
456 1ek0_A Protein (GTP-binding pr 94.0 0.028 9.5E-07 47.0 2.9 22 206-227 5-26 (170)
457 1u8z_A RAS-related protein RAL 94.0 0.028 9.6E-07 46.8 2.9 23 205-227 5-27 (168)
458 1z0j_A RAB-22, RAS-related pro 93.9 0.029 9.9E-07 46.9 2.9 23 206-228 8-30 (170)
459 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.03 1E-06 47.4 2.9 22 206-227 9-30 (177)
460 4tmk_A Protein (thymidylate ki 93.9 0.032 1.1E-06 49.7 3.3 24 205-228 4-27 (213)
461 1z08_A RAS-related protein RAB 93.9 0.03 1E-06 46.9 3.0 22 206-227 8-29 (170)
462 2p5s_A RAS and EF-hand domain 93.9 0.025 8.5E-07 49.2 2.5 23 205-227 29-51 (199)
463 2nzj_A GTP-binding protein REM 93.9 0.028 9.6E-07 47.3 2.8 22 206-227 6-27 (175)
464 2lkc_A Translation initiation 93.9 0.034 1.1E-06 47.0 3.2 24 204-227 8-31 (178)
465 1g16_A RAS-related protein SEC 93.8 0.029 9.9E-07 46.9 2.7 22 206-227 5-26 (170)
466 1ky3_A GTP-binding protein YPT 93.8 0.031 1.1E-06 47.3 2.9 23 205-227 9-31 (182)
467 3clv_A RAB5 protein, putative; 93.8 0.043 1.5E-06 47.2 3.9 23 205-227 8-30 (208)
468 2xtp_A GTPase IMAP family memb 93.8 0.18 6E-06 45.9 8.2 23 205-227 23-45 (260)
469 2qtf_A Protein HFLX, GTP-bindi 93.8 0.081 2.8E-06 51.2 6.1 22 206-227 181-202 (364)
470 2www_A Methylmalonic aciduria 93.7 0.057 2E-06 51.9 4.9 24 205-228 75-98 (349)
471 2xzl_A ATP-dependent helicase 93.7 0.049 1.7E-06 58.4 4.8 21 206-226 377-397 (802)
472 1c1y_A RAS-related protein RAP 93.7 0.033 1.1E-06 46.4 2.9 22 206-227 5-26 (167)
473 1pui_A ENGB, probable GTP-bind 93.7 0.013 4.5E-07 51.4 0.3 26 202-227 24-49 (210)
474 1r2q_A RAS-related protein RAB 93.7 0.034 1.2E-06 46.4 2.9 22 206-227 8-29 (170)
475 1r8s_A ADP-ribosylation factor 93.7 0.034 1.2E-06 46.3 2.9 22 206-227 2-23 (164)
476 1ko7_A HPR kinase/phosphatase; 93.7 0.035 1.2E-06 52.5 3.2 24 204-227 144-167 (314)
477 2wjg_A FEOB, ferrous iron tran 93.6 0.032 1.1E-06 47.8 2.7 22 206-227 9-30 (188)
478 3ux8_A Excinuclease ABC, A sub 93.6 0.13 4.5E-06 53.9 7.9 20 202-221 42-61 (670)
479 3q85_A GTP-binding protein REM 93.6 0.033 1.1E-06 46.7 2.7 21 206-226 4-24 (169)
480 2erx_A GTP-binding protein DI- 93.6 0.034 1.2E-06 46.5 2.8 22 206-227 5-26 (172)
481 3bc1_A RAS-related protein RAB 93.6 0.036 1.2E-06 47.5 2.9 22 206-227 13-34 (195)
482 2wsm_A Hydrogenase expression/ 93.5 0.037 1.3E-06 49.0 3.0 25 205-229 31-55 (221)
483 2gj8_A MNME, tRNA modification 93.5 0.028 9.7E-07 47.8 2.1 23 205-227 5-27 (172)
484 4dsu_A GTPase KRAS, isoform 2B 93.5 0.038 1.3E-06 47.2 2.9 22 206-227 6-27 (189)
485 3o8b_A HCV NS3 protease/helica 93.5 0.33 1.1E-05 50.6 10.5 33 204-236 232-264 (666)
486 2xgj_A ATP-dependent RNA helic 93.5 0.18 6.1E-06 55.5 8.9 20 205-224 102-121 (1010)
487 3q72_A GTP-binding protein RAD 93.5 0.032 1.1E-06 46.6 2.4 21 206-226 4-24 (166)
488 2y8e_A RAB-protein 6, GH09086P 93.5 0.036 1.2E-06 46.8 2.7 22 206-227 16-37 (179)
489 1svi_A GTP-binding protein YSX 93.5 0.038 1.3E-06 47.6 2.9 24 204-227 23-46 (195)
490 2fn4_A P23, RAS-related protei 93.4 0.037 1.3E-06 46.8 2.8 22 206-227 11-32 (181)
491 1z0f_A RAB14, member RAS oncog 93.4 0.039 1.3E-06 46.5 2.9 23 206-228 17-39 (179)
492 1m7b_A RND3/RHOE small GTP-bin 93.4 0.037 1.3E-06 47.4 2.7 23 205-227 8-30 (184)
493 2oil_A CATX-8, RAS-related pro 93.4 0.039 1.3E-06 47.5 2.9 22 206-227 27-48 (193)
494 4a2w_A RIG-I, retinoic acid in 93.4 0.6 2.1E-05 50.9 12.9 24 205-228 264-287 (936)
495 2hxs_A RAB-26, RAS-related pro 93.4 0.035 1.2E-06 46.9 2.5 23 205-227 7-29 (178)
496 3oiy_A Reverse gyrase helicase 93.4 0.12 4.2E-06 50.4 6.8 21 204-224 36-56 (414)
497 3bfv_A CAPA1, CAPB2, membrane 93.4 0.15 5E-06 47.1 6.9 54 176-238 63-120 (271)
498 3con_A GTPase NRAS; structural 93.4 0.04 1.4E-06 47.3 2.9 22 206-227 23-44 (190)
499 3ch4_B Pmkase, phosphomevalona 93.3 0.068 2.3E-06 47.1 4.3 41 202-242 9-50 (202)
500 2efe_B Small GTP-binding prote 93.3 0.043 1.5E-06 46.5 3.0 22 206-227 14-35 (181)
No 1
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-66 Score=519.23 Aligned_cols=414 Identities=70% Similarity=1.094 Sum_probs=355.4
Q ss_pred CCChhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCc---
Q 014525 10 NLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPED--- 86 (423)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 86 (423)
++.++++..++.+++..+.+.++.++..++.+..+++.+.+.++.++...++++..++..|..++++.+.++.....
T Consensus 16 ~~l~~ei~~~~~~~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~ 95 (434)
T 4b4t_M 16 DELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKE 95 (434)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC----------
T ss_pred chHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhc
Confidence 44566777777788888888889999999999999999999999999999999999999999999998877643211
Q ss_pred --chhccCcccccccccCCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccC
Q 014525 87 --EAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 164 (423)
Q Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 164 (423)
.....+..........+...+++.+++..+++++.+.+++..++||+.|.++.++..++..||...++.+..+...+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~ 175 (434)
T 4b4t_M 96 NSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEK 175 (434)
T ss_dssp -----------------CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESS
T ss_pred cchhhhhhhhhhhhhcccCceEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCC
Confidence 112233344455566677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
|.++|+||+|++++++.|.+.+..|+.+|+.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCh
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 324 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~ 324 (423)
+|.++..++.+|..++.+.|+||||||+|.++++|.++..+++......+.++|+.++++.+..+++||+|||+|+.|||
T Consensus 256 vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~ 335 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDP 335 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCH
Confidence 99999999999999999999999999999999999887777788889999999999999999899999999999999999
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 014525 325 ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 404 (423)
+++|||||+..|+||+|+.++|.+||+.+++++.+..++++..||..|.||||+||.++|++|++.|++++...|+.+||
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df 415 (434)
T 4b4t_M 336 ALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDF 415 (434)
T ss_dssp TTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHH
T ss_pred hHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccC
Q 014525 405 NEGIIQVQAKKKASLNYYA 423 (423)
Q Consensus 405 ~~al~~~~~~~~~~~~~~~ 423 (423)
.+|+.++.++++.+++||+
T Consensus 416 ~~Al~~v~~~~~~~i~~Ya 434 (434)
T 4b4t_M 416 VEGISEVQARKSKSVSFYA 434 (434)
T ss_dssp HHHHHSCSSSCCCCCCCCC
T ss_pred HHHHHHHhCCCCcCccccC
Confidence 9999999999999999997
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-65 Score=499.82 Aligned_cols=371 Identities=43% Similarity=0.733 Sum_probs=351.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCc
Q 014525 25 VRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGK 104 (423)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (423)
..+++.++.++....+.+.+++.+.+.++.++..+++++..++..+..++++.+.+++.
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~--------------------- 82 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDK--------------------- 82 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTS---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCC---------------------
Confidence 34556667777777778888888888999999999999999999999999999999865
Q ss_pred EEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHH
Q 014525 105 CVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVE 184 (423)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~ 184 (423)
+.+++.+.+..+++.+.+.++.+.++||+.|.++.++..+...+|...++.+..+...+.|.++|+||+|++++++.|.+
T Consensus 83 ~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e 162 (405)
T 4b4t_J 83 KVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKE 162 (405)
T ss_dssp CEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHH
T ss_pred eEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHH
Confidence 68888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCC
Q 014525 185 AIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSP 264 (423)
Q Consensus 185 ~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~ 264 (423)
.+..|+.+|++|.++|++||+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+.+.|
T Consensus 163 ~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 163 VIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp HTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHH
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEE 344 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 344 (423)
+||||||+|.++++|..+..+++....+.+.++|+.++++....+++||+|||+|+.|||+++||||||..|+||+|+.+
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHH
Confidence 99999999999999987777777888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q 014525 345 ARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 345 ~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~ 416 (423)
+|.+||+.+++++++..++++..||..|.||||+||.++|++|++.|+++++..||++||..|++++.++..
T Consensus 323 ~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp HHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988655
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-63 Score=490.07 Aligned_cols=358 Identities=46% Similarity=0.800 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCCCceEE
Q 014525 38 LKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIF 117 (423)
Q Consensus 38 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (423)
+++++-+.++.++.+..+.+.+++++++++..|..++++.+.+++. +.+++.++++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~---------------------~~iv~~~~~~~~~ 129 (437)
T 4b4t_I 71 LEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDD---------------------HAIVTSPTMPDYY 129 (437)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECTTS---------------------EEEEECSSSCCCE
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHhhcCCCceeEEEEEEecCC---------------------EEEEEcCCCCEEE
Confidence 3455555666677888889999999999999999999999999876 8999999999999
Q ss_pred EEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHh
Q 014525 118 LPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQ 197 (423)
Q Consensus 118 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~ 197 (423)
+.+.+.+++..++||+.|.++.++..++..||...++.+..+.+.+.|.++|+||+|++++++.|.+.+..|+.+|+.|.
T Consensus 130 v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~ 209 (437)
T 4b4t_I 130 VSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYE 209 (437)
T ss_dssp EECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHH
T ss_pred EecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhc
Q 014525 198 KLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 198 ~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
.+|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..++.+.|+||||||+|.+++
T Consensus 210 ~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 210 EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC
T ss_pred hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC
Q 014525 278 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM 357 (423)
Q Consensus 278 ~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~ 357 (423)
+|.++...++....+.+.++|+.++++....+++||+|||+|+.|||+++||||||..|+|++|+.++|.+||+.+++++
T Consensus 290 ~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~ 369 (437)
T 4b4t_I 290 KRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM 369 (437)
T ss_dssp CCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred cCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC
Confidence 99877777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q 014525 358 NVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 358 ~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~ 416 (423)
.+..++++..||..|.||||+||.++|++|++.|+++++..||++||..|++++.++..
T Consensus 370 ~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 370 NLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp CBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHC
T ss_pred CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999988665
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-62 Score=489.25 Aligned_cols=381 Identities=38% Similarity=0.692 Sum_probs=356.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCccccccccc
Q 014525 22 DDIVRASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQR 101 (423)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
.++..+++.++.+++.|.-|.+.++.+++.++.++..++++++.++..|..++++.+.++..
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~------------------ 106 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQN------------------ 106 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCC------------------
Confidence 45566777888888888888888999999999999999999999999999999999999865
Q ss_pred CCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHH
Q 014525 102 KGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQE 181 (423)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~ 181 (423)
..+++.+.++.+++.+.+.++.+.+++|+.|.++..+..+...||...++.+..+...+.|.++|+||+|++++++.
T Consensus 107 ---~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~ 183 (428)
T 4b4t_K 107 ---TGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQE 183 (428)
T ss_dssp ---EEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHH
T ss_pred ---eeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHh
Q 014525 182 LVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE 261 (423)
Q Consensus 182 l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~ 261 (423)
|.+.+..|+.+|+.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|.++..++.+|..++.
T Consensus 184 l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 184 IREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE 263 (428)
T ss_dssp HHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcC-C
Q 014525 262 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFP-H 340 (423)
Q Consensus 262 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~-~ 340 (423)
+.|+||||||+|.+++.|.+....++....+++.++|..++++....+++||+|||+|+.|||+++|||||+..|+|| +
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 999999999999999999877777777888999999999999999899999999999999999999999999999997 8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh--hhh
Q 014525 341 PTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK--KAS 418 (423)
Q Consensus 341 p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~--~~~ 418 (423)
|+.++|..||+.+++++.+..++++..||..|.||||+||.++|++|++.|+++++..|+++||.+|+..+.... ...
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~~~~~~ 423 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDK 423 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSCCCSSC
T ss_pred CCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCccCCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765432 246
Q ss_pred ccccC
Q 014525 419 LNYYA 423 (423)
Q Consensus 419 ~~~~~ 423 (423)
++||+
T Consensus 424 ~d~yk 428 (428)
T 4b4t_K 424 FDFYK 428 (428)
T ss_dssp CCSCC
T ss_pred hhhhC
Confidence 67875
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-61 Score=483.82 Aligned_cols=365 Identities=40% Similarity=0.695 Sum_probs=337.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCCCceE
Q 014525 37 VLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTI 116 (423)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (423)
.++.++..++.....++.+....+++++.++..+..++++.+.+++. ..+++.+.+..+
T Consensus 69 ~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~---------------------~~iv~~~~g~~~ 127 (437)
T 4b4t_L 69 RYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEE---------------------KYIVKASSGPRY 127 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSS---------------------CEEEEETTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCC---------------------cEEEEECCCCEE
Confidence 44555566666667777788888889999999999999999988765 678888889999
Q ss_pred EEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHHHHHHHHHccccChhHH
Q 014525 117 FLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERF 196 (423)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~ 196 (423)
++.+.+.++...++||+.|.++..+..++..||...++.+..+.+.+.|.++|+||+|++++++.|.+.+..|+.+|++|
T Consensus 128 ~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f 207 (437)
T 4b4t_L 128 IVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIF 207 (437)
T ss_dssp EECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred EEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhh
Q 014525 197 QKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIG 276 (423)
Q Consensus 197 ~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~ 276 (423)
..+|+.||+|+|||||||||||++|+++|++++.+|+.+++++++++|+|.++..++.+|..++.+.|+||||||+|.++
T Consensus 208 ~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 208 QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSS
T ss_pred HhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc
Q 014525 277 TKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK 356 (423)
Q Consensus 277 ~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~ 356 (423)
++|.++....+......+.++|..++++...++++||+|||+|+.|||+++|||||+..|+||+|+.++|.+||+.++++
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 99987777777788899999999999999989999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh--hhcccc
Q 014525 357 MNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK--ASLNYY 422 (423)
Q Consensus 357 ~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~--~~~~~~ 422 (423)
+....++|+..||..|.||||+||.++|++|++.|++++...|+.+||.+|++++.+.+. ...+|+
T Consensus 368 ~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 368 VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC--------
T ss_pred CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999988554 334544
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-58 Score=458.84 Aligned_cols=314 Identities=46% Similarity=0.790 Sum_probs=301.0
Q ss_pred cCCcEEEEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccccCCCCCcccccCchHHHH
Q 014525 101 RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQ 180 (423)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~ 180 (423)
....+++++.+.+..+++.+.+.+++..++||++|.++..+..+...||...++.+..|++++.|.++|+||+|++++++
T Consensus 140 ~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~ 219 (467)
T 4b4t_H 140 DEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIE 219 (467)
T ss_dssp -CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHH
T ss_pred CCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHH
Confidence 34456788888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHH
Q 014525 181 ELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAK 260 (423)
Q Consensus 181 ~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~ 260 (423)
.|.+.+..|+.+|+.|.++|+.||+|+|||||||||||++|+++|++++.+|+.++++++.++|+|.++..++.+|..++
T Consensus 220 ~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 220 KLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMAR 299 (467)
T ss_dssp HHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCC
Q 014525 261 EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 340 (423)
.+.|+||||||+|.++++|.++..+.+......+.++|..++++....+++||+|||+|+.|||+++|||||+..|+|++
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 99999999999999999998777767778889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 341 PTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 341 p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
|+.++|.+||+.+++++.+..++++..||..|.||||+||.++|++|++.|+++++..||.+||..|++++...
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-45 Score=390.43 Aligned_cols=261 Identities=39% Similarity=0.724 Sum_probs=195.6
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
...|.+.|++|+|++++++.+.+.+..|+.+|+.|.++|+.+++++|||||||||||++|+++|++++.+|+.+++++++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~ 321 (423)
++|+|++++.++.+|..|+...||||||||||.+++.|..+...++....+++.+||.+++++....+++||+|||+|+.
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999988654333344455788899999999988889999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------
Q 014525 322 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------ 395 (423)
Q Consensus 322 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~------ 395 (423)
||++++|||||+..|+||+|+.++|.+||+.++++.++..++++..||..|.||||+||.++|++|++.|+++.
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~ 708 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC----
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998762
Q ss_pred -------------------CCCcCHHHHHHHHHHHHHhhh-hhcccc
Q 014525 396 -------------------ATEVNHEDFNEGIIQVQAKKK-ASLNYY 422 (423)
Q Consensus 396 -------------------~~~It~~d~~~al~~~~~~~~-~~~~~~ 422 (423)
...|+++||.+|++.+.++-+ ..+..|
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y 755 (806)
T 3cf2_A 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKY 755 (806)
T ss_dssp -------------------CCC----CCTTTC---------------
T ss_pred hhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 125999999999999998654 334433
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7e-43 Score=370.88 Aligned_cols=252 Identities=40% Similarity=0.711 Sum_probs=230.4
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
...|.++|++|+|++++++.|.+.+..|+.+|+.|..+|+.||+|+|||||||||||++|+++|++++.+|+.+++++++
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~ 321 (423)
++|.|.++..++.+|..|+.+.|+||||||||.++++|.++..... .+.+.+++..++++....+++||+|||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~---~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE---RRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTH---HHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHH---HHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999998865543333 3456677777777777789999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------
Q 014525 322 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------ 395 (423)
Q Consensus 322 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~------ 395 (423)
+|++++|+|||+..|+++.|+.++|.+||+.+++++.+..++++..||..|+||+|+||.++|++|++.|+++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred -----------CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 -----------ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 -----------~~~It~~d~~~al~~~~~~~~ 416 (423)
...|+.+||..|+..+.++..
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 135889999999988776443
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.8e-39 Score=305.83 Aligned_cols=261 Identities=58% Similarity=0.965 Sum_probs=243.1
Q ss_pred cccccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 157 KAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 157 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
..+.....|...|++|+|++.+++.+.+.+..++.+++.+..+|+.+++++||+||||||||++|+++|+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 4 KAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp -CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 237 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 237 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
++++...+.|.....+..+|..+....|+||||||+|.+.+++.+....++...+..+..+++.+++.....+++||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999998887766666778899999999998888777899999999
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 014525 317 NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA 396 (423)
Q Consensus 317 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~ 396 (423)
|.++.+++++++++||+.++.+++|+.++|.+|++.++.......+.++..++..+.|+++++|..+|+.|...|..++.
T Consensus 164 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~ 243 (285)
T 3h4m_A 164 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR 243 (285)
T ss_dssp SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHhhhh
Q 014525 397 TEVNHEDFNEGIIQVQAKKKA 417 (423)
Q Consensus 397 ~~It~~d~~~al~~~~~~~~~ 417 (423)
..|+.+||.+|+..+...+..
T Consensus 244 ~~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 244 DYVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp SSBCHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHHHhcccc
Confidence 999999999999999876543
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=8.2e-40 Score=315.04 Aligned_cols=253 Identities=40% Similarity=0.738 Sum_probs=221.4
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
+.|.++|++|+|++.+++.+.+.+..++.+++.|..+|+.+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
.+.|..+..++.+|..+....|+||||||+|.+.+.+..............+.+++..+++.....+++||+|||.++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999888899999999999999999999999987664322111111112444555556666666789999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD------- 395 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~------- 395 (423)
+++++++|||+..+++++|+.++|.+|++.+++..+...++++..++..+.||+|+||.++|++|++.|..+.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998888788899999999999999999999999999887642
Q ss_pred ------------------CCCcCHHHHHHHHHHHHHhh
Q 014525 396 ------------------ATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 396 ------------------~~~It~~d~~~al~~~~~~~ 415 (423)
...|+.+||..|++.+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 13699999999999886643
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.1e-37 Score=315.40 Aligned_cols=249 Identities=45% Similarity=0.761 Sum_probs=221.9
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
.+..+|++|+|++++++.+.+.+.. +.++..|..+|..+|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3567899999999999999997764 678889999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
+.|.+...++.+|..+....|+||||||+|.+++++..+..+.+.+....+.+++..++++....+++||+|||.++.++
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99988888999999999999999999999999987754433445555667788888887776667899999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 403 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d 403 (423)
++++|+|||+..+.+++|+.++|.+|++.+++..++..++++..++..+.|++|+||.++|++|+..|.+++...|+.+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHH
Q 014525 404 FNEGIIQVQA 413 (423)
Q Consensus 404 ~~~al~~~~~ 413 (423)
|..|+.++..
T Consensus 249 l~~al~~v~~ 258 (476)
T 2ce7_A 249 FEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=301.12 Aligned_cols=249 Identities=39% Similarity=0.710 Sum_probs=209.3
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
.|.++|++|+|++++++.+.+.+..|+.+++.+..+++.+++|++|+||||||||+|++++|..++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
+.|.....++.+|+.+....|+++|+||+|.+++.+...... ...+.+.+++..+++...+..++++++||.|+.+|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~---~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG---ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcch---HHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 888888889999999988899999999999987665322111 12235567777888877778899999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc---CCCCCCCCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHhC---
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRK---MNVHPDVNFEELARST--DDFNGAQLKAVCVEAGMLALRRD--- 395 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~~l~~la~~~--~g~s~~dl~~l~~~A~~~A~~~~--- 395 (423)
++++|||||+..|++++|+.++|.+|++.+++. .....++++..++..+ .||||+||.++|++|++.|+++.
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998854 3455788999999875 59999999999999999998752
Q ss_pred --------CCCcCHHHHHHHHHHHHHhh
Q 014525 396 --------ATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 396 --------~~~It~~d~~~al~~~~~~~ 415 (423)
...|+++||..|++.+.++-
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCCC
Confidence 34799999999999887643
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=7.7e-37 Score=287.48 Aligned_cols=249 Identities=41% Similarity=0.717 Sum_probs=219.0
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
..+...|++|+|++.+++.+.+.+.. +.++..+..+|..++++++|+||||||||++|+++|+.++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34668999999999999999987654 77788888888888999999999999999999999999999999999999998
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
.+.|.....++.+|..+....|+++||||+|.+...+......+..+....+.+++..+++.....+++||+|||.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 88898888899999999988899999999999988765433333444556677788888877777789999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 402 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~ 402 (423)
++++++++||+..+.+++|+.++|.+|++.+++...+..+.++..++..+.||+++||.++|+.|...|..++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 014525 403 DFNEGIIQVQ 412 (423)
Q Consensus 403 d~~~al~~~~ 412 (423)
||..|+..+.
T Consensus 244 ~~~~a~~~~~ 253 (257)
T 1lv7_A 244 EFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=300.18 Aligned_cols=248 Identities=35% Similarity=0.629 Sum_probs=217.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-CCcEEEEccchhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQLV 241 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-~~~~i~v~~~~l~ 241 (423)
+.|.++|++|+|++.+++.+.+.+..|+.+++.|.. +..|++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 457789999999999999999999999999999874 35678899999999999999999999999 8999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC-CCCCeEEEEEcCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS-SDDRIKVIAATNRAD 320 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~v~vI~ttn~~~ 320 (423)
..|.|..+..++.+|..++...|+||||||+|.+++.+..... ......+.+++..+++.. ...+++||+|||.++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES---EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCT---THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccc---hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999999987755432 234456667777777764 357899999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC----
Q 014525 321 ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD---- 395 (423)
Q Consensus 321 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~---- 395 (423)
.++++++| ||+..+++++|+.++|.+|++.++...+.. .+.++..|+..+.||+|+||..+|++|++.|+++.
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 999999999999999999999999877654 45678999999999999999999999999998751
Q ss_pred ---------------------------------------------CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 ---------------------------------------------ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 ---------------------------------------------~~~It~~d~~~al~~~~~~~~ 416 (423)
...||++||..|++.+.++-+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~ 304 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVN 304 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCC
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCC
Confidence 126999999999999887543
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.7e-37 Score=300.30 Aligned_cols=248 Identities=32% Similarity=0.603 Sum_probs=212.9
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+.|.+.|++|+|++.+++.+.+.+..++.+++.+.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 3467789999999999999999999999999998877 456788999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC-CCCCCeEEEEEcCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-SSDDRIKVIAATNRAD 320 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~~v~vI~ttn~~~ 320 (423)
..+.|..+..++.+|..++...|+||||||||.+.+.+.+........++..+ +..+++. ....+++||+|||.++
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l---l~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL---LVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHH---HHHHGGGGTSCCCEEEEEEESCGG
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHH---HHHhccccccCCceEEEEecCChh
Confidence 99999999999999999999999999999999999877554444444444444 4444443 2446899999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC---
Q 014525 321 ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA--- 396 (423)
Q Consensus 321 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~--- 396 (423)
.+++++++ ||+..+++++|+.++|.+|++.++...... .+.++..|+..+.||+|+||..+|+.|.+.|+++..
T Consensus 166 ~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 166 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243 (322)
T ss_dssp GSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCE
T ss_pred hCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999999877654 456789999999999999999999999999987631
Q ss_pred ----------------------------------------CCcCHHHHHHHHHHHHHhh
Q 014525 397 ----------------------------------------TEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 397 ----------------------------------------~~It~~d~~~al~~~~~~~ 415 (423)
..||++||.+|++.+.++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp EEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 3499999999999988754
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.7e-36 Score=305.69 Aligned_cols=251 Identities=40% Similarity=0.713 Sum_probs=225.1
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+...|++|+|++.+++.+.+.+..++.+++.|..+|..+++++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCh
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 324 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~ 324 (423)
.|...+.++.+|..+....|++|||||||.+.+++..........++..|+.+++ +.....+++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld---~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD---GLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH---HSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh---ccccCCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999987754333223344455555544 4455678999999999999999
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC-------
Q 014525 325 ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDAT------- 397 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~------- 397 (423)
+++++|||+..+++++|+.++|.+|++.+++.+.+..+.++..++..+.||++++|..+|++|++.|+++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999998888889999999999999999999999999999887533
Q ss_pred ----------CcCHHHHHHHHHHHHHhhhhh
Q 014525 398 ----------EVNHEDFNEGIIQVQAKKKAS 418 (423)
Q Consensus 398 ----------~It~~d~~~al~~~~~~~~~~ 418 (423)
.||++||..|++.+.++....
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re 466 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHG
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhc
Confidence 489999999999999876543
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2e-36 Score=297.88 Aligned_cols=249 Identities=33% Similarity=0.598 Sum_probs=206.0
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
...|...|++|+|++.+++.+.+.+..++.+++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3456789999999999999999999999999999887 567888999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNRAD 320 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~v~vI~ttn~~~ 320 (423)
..+.|..+..++.+|..++...|+||||||+|.+.+.+........ .....+++..+++... ..+++||+|||.++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~---~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS---RRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHH---HHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHH---HHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 9999999999999999999999999999999999877644332222 2334445555544432 46799999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC----
Q 014525 321 ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD---- 395 (423)
Q Consensus 321 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~---- 395 (423)
.+++++++ ||+..+++++|+.++|.+|++.++...+.. .+.++..|+..+.||+|+||.++|++|++.|+++.
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 999999999999999999999999877653 45678999999999999999999999999998761
Q ss_pred ---------------------------------------CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 ---------------------------------------ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 ---------------------------------------~~~It~~d~~~al~~~~~~~~ 416 (423)
...|+++||..|++.+.++-+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 135999999999999987543
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=283.29 Aligned_cols=251 Identities=38% Similarity=0.644 Sum_probs=198.4
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
|..+|++|+|++.+++.+.+.+.. +.+++.|..+|+.+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 457899999999999999987765 7778888889999999999999999999999999999999999999999998888
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCC-CcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS-GDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
.|.....+..+|..+....|+||||||+|.+..++...... .+...+..+..++..+++.....+++||+|||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88888888899999998889999999999998765332111 12345567788888888777777899999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCC--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVN--FEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNH 401 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~--l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~ 401 (423)
++++++|||+..+++++|+.++|.+|++.++...+.....+ +..++..+.|+++++|..+|+.|+..|..++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999998887764433 4789999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHhhh
Q 014525 402 EDFNEGIIQVQAKKK 416 (423)
Q Consensus 402 ~d~~~al~~~~~~~~ 416 (423)
+||..|+..+.+...
T Consensus 240 ~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 240 LNFEYAVERVLAGTA 254 (262)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChh
Confidence 999999999987543
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-35 Score=300.72 Aligned_cols=249 Identities=43% Similarity=0.728 Sum_probs=225.1
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
+..+|++|+|+++++..+.+.+.. +.++..|..+|+..|++++|+||||||||+||+++|..++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 668999999999999999997654 6677888999999999999999999999999999999999999999999999888
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCh
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDP 324 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~ 324 (423)
.|.....++.+|+.+....|+++||||||.++..+.......+.+....+.+++..+++...+..+++|++||.|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888888899998887889999999999998776543333455667788899999998877788999999999999999
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 014525 325 ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 404 (423)
+++|+|||+..+.+++|+.++|.+|++.+++...+..++++..++..+.|++|+||.++|++|+..|.+++...|+.+||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 99999999999999999999999999999988888888899999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHh
Q 014525 405 NEGIIQVQAK 414 (423)
Q Consensus 405 ~~al~~~~~~ 414 (423)
..|+..+...
T Consensus 265 ~~al~~v~~~ 274 (499)
T 2dhr_A 265 EEAADRVMML 274 (499)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhcc
Confidence 9999998653
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=3.1e-34 Score=269.20 Aligned_cols=245 Identities=44% Similarity=0.748 Sum_probs=212.6
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
..|..+|++++|++..+..+.+.+.. ..++..+...++..+++++|+||||||||++++++++.++.+++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 45678999999999999999886654 56677888889998999999999999999999999999999999999998888
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
.+.+.....+..+|+.+....|+++++||+|.++..+.........+....+.+++..+++...+..++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 77777777788899998877889999999999987654322223445566777888888877777788999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 402 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~ 402 (423)
|++++|++||+..+.+++|+.++|.+|++.+.+...+..++++..++..+.|++++||.++|++|...|..++...||.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999888888888899999999999999999999999999998888899999
Q ss_pred HHHHHH
Q 014525 403 DFNEGI 408 (423)
Q Consensus 403 d~~~al 408 (423)
||.+|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999886
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.2e-35 Score=296.57 Aligned_cols=250 Identities=35% Similarity=0.618 Sum_probs=208.0
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-CCcEEEEccch
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQ 239 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-~~~~i~v~~~~ 239 (423)
....|...|++|+|++.+++.+.+.+..|+.+++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34567789999999999999999999999999988875 34677899999999999999999999999 89999999999
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEcCC
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNR 318 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~v~vI~ttn~ 318 (423)
+...|.|..+..++.+|..++...|+||||||||.+++.+....... ....+.+++..+++... ..+++||+|||.
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA---ARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGG---GHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccH---HHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999888899999999999999999999999988775543322 23455667777776543 568999999999
Q ss_pred CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--
Q 014525 319 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-- 395 (423)
Q Consensus 319 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~-- 395 (423)
++.++++++| ||+..+++++|+.++|..|++.++...+.. .+.++..|+..+.||+|+||..+|++|++.|+++.
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999876653 45678999999999999999999999999998751
Q ss_pred -----------------------------------------------CCCcCHHHHHHHHHHHHHhhh
Q 014525 396 -----------------------------------------------ATEVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 396 -----------------------------------------------~~~It~~d~~~al~~~~~~~~ 416 (423)
...||++||..|+..+.++.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~ 426 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVN 426 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCC
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCC
Confidence 126999999999999887543
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=7.5e-33 Score=263.38 Aligned_cols=245 Identities=44% Similarity=0.748 Sum_probs=213.0
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
..|..+|++++|++..+..+.+.+.. ...+..+...++..+++++|+||||||||+|+++++..++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34678999999999999999886654 56677888889888889999999999999999999999999999999998888
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
.+.+.....+..+|+.+....|+++++||+|.++..+.........+....+.+++..+++...+..++++++||.|+.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 77777777788899998878899999999999986653322223445667788888888887777788999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 402 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~ 402 (423)
|+++++++||+..+.+++|+.++|.+|++.+++...+..++++..++..+.|++++||.++|+.|...|..++...||.+
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~ 271 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 271 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHH
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999888888888899999999999999999999999999988888899999
Q ss_pred HHHHHH
Q 014525 403 DFNEGI 408 (423)
Q Consensus 403 d~~~al 408 (423)
||.+|+
T Consensus 272 dl~~a~ 277 (278)
T 1iy2_A 272 DLEEAA 277 (278)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999886
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=1.6e-36 Score=286.95 Aligned_cols=253 Identities=43% Similarity=0.720 Sum_probs=211.7
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
.+...|++|+|++.+++.+.+.+.. +.+++.|..+|..+++++||+||||||||++|+++|++++.+++.++++.+...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4567899999999999999997664 788999999999999999999999999999999999999999999999999888
Q ss_pred hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCC-CCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCCC
Q 014525 244 FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV-SGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNRADI 321 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~-~~~~~~~~~l~~ll~~~~~~~~-~~~v~vI~ttn~~~~ 321 (423)
+.|.....++.+|..+....|+||||||+|.+...+..+.. ..+......+.+++..+++... ..+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 88777666777888888888999999999999876532110 0111111234556666655443 345899999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 014525 322 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNH 401 (423)
Q Consensus 322 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~ 401 (423)
++++++++|||+..+.|++|+.++|.++++.++....+..+.++..++..+.|++|++|.++|+.|...|..++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999998888778889999999999999999999999999998877889999
Q ss_pred HHHHHHHHHHHHhhhh
Q 014525 402 EDFNEGIIQVQAKKKA 417 (423)
Q Consensus 402 ~d~~~al~~~~~~~~~ 417 (423)
+||..|+..+.++...
T Consensus 244 ~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 244 QHLKEAVERGIAGLEK 259 (268)
T ss_dssp HHHHTSCTTCCCCCC-
T ss_pred HHHHHHHHHHhhcchh
Confidence 9999999888775544
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1e-33 Score=271.62 Aligned_cols=249 Identities=35% Similarity=0.601 Sum_probs=207.4
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
...++.+|++|+|++.+++.+.+.+..+..+++.|...+ .+++++||+||||||||++|+++|+.++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345678999999999999999999999999888887765 4678999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~ 321 (423)
..+.|.....++.+|..+....|+||||||+|.+...+...........+..++..++.........+++||++||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 99999988889999999999999999999999998876544333344555555555554333222357999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-----
Q 014525 322 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD----- 395 (423)
Q Consensus 322 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~----- 395 (423)
+++++++ ||+..+++++|+.++|..|++.++...+.. .+.++..++..+.|+++++|..+|+.|+..|+++.
T Consensus 172 l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~ 249 (297)
T 3b9p_A 172 LDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQV 249 (297)
T ss_dssp BCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC----
T ss_pred CCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999 999999999999999999999998876543 33457889999999999999999999999998874
Q ss_pred -------CCCcCHHHHHHHHHHHHH
Q 014525 396 -------ATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 396 -------~~~It~~d~~~al~~~~~ 413 (423)
...|+.+||..|+..+.+
T Consensus 250 ~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 250 KCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp ----CCCCCCCCHHHHHHHTTSCCC
T ss_pred ccccccccCCcCHHHHHHHHHHcCC
Confidence 257999999999988765
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=276.56 Aligned_cols=249 Identities=36% Similarity=0.621 Sum_probs=209.4
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
....+...|++|+|++.+++.+.+.+..++.+++.|...+ .+++++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 4456778999999999999999999999988888887665 567899999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC--CCCCeEEEEEcCC
Q 014525 241 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--SDDRIKVIAATNR 318 (423)
Q Consensus 241 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~v~vI~ttn~ 318 (423)
...+.|.....++.+|..+....|+||||||||.+.+.+..+... .....+.+++..+++.. ...+++||+|||.
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHE---SSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------C---HHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcch---HHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 999999999999999999999999999999999998766433222 22334445555555443 3468999999999
Q ss_pred CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--
Q 014525 319 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD-- 395 (423)
Q Consensus 319 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~-- 395 (423)
++.+++++++ ||+..+++++|+.++|.+|++.++...... .+.++..|+..+.||++++|..+|+.|+..++++.
T Consensus 231 ~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~ 308 (357)
T 3d8b_A 231 PQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT 308 (357)
T ss_dssp GGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC
T ss_pred hhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 999999999999999999999998765543 34468889999999999999999999999998753
Q ss_pred ----------CCCcCHHHHHHHHHHHHHhh
Q 014525 396 ----------ATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 396 ----------~~~It~~d~~~al~~~~~~~ 415 (423)
...|+.+||..|+..+.++.
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 309 ADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp ----------CCCBCHHHHHHHHHHHGGGC
T ss_pred hhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 35799999999999998754
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=272.55 Aligned_cols=250 Identities=34% Similarity=0.607 Sum_probs=199.6
Q ss_pred ccccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch
Q 014525 160 EVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239 (423)
Q Consensus 160 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~ 239 (423)
-+...+...|++|+|++.+++.+.+.+..+..+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34455778999999999999999999999998888888776 45689999999999999999999999999999999999
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
+...|.|.....++.+|..+....|+||||||||.++..+..........++..++..++.... ....+++||+|||.+
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLVMGATNRP 262 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEESCG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-cCCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999998776544333344445555555544322 224579999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----
Q 014525 320 DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR---- 394 (423)
Q Consensus 320 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~---- 394 (423)
+.+++++++ ||+.++++++|+.++|..|++.++...+.. .+.++..|+..+.|+++++|..+|+.|+..++++
T Consensus 263 ~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 263 QELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred hhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999 999999999999999999999998775543 2345789999999999999999999999999887
Q ss_pred --------CCCCcCHHHHHHHHHHHHH
Q 014525 395 --------DATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 395 --------~~~~It~~d~~~al~~~~~ 413 (423)
....|+.+||..++..+.+
T Consensus 341 ~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 341 QVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp ---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred hhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 3457999999999987654
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.2e-35 Score=318.05 Aligned_cols=254 Identities=40% Similarity=0.730 Sum_probs=217.5
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
...+...|++++|++.+++.+.+.+..++.+++.+..+++.++.++||+||||||||++|+++|+.++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~ 321 (423)
..|+|..+..++.+|..++...|+||||||||.+++.+.......+....+.+.+++..+++.....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998877544332333456677888888888877789999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC-----
Q 014525 322 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA----- 396 (423)
Q Consensus 322 l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~----- 396 (423)
+|++++|||||+..++|++|+.++|.+|++.+++...+..++++..|+..+.|||+++|.++|+.|...|+++..
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~ 708 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998888888999999999999999999999999999988742
Q ss_pred --------------------CCcCHHHHHHHHHHHHHhh
Q 014525 397 --------------------TEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 397 --------------------~~It~~d~~~al~~~~~~~ 415 (423)
..|+.+||.+|+..+.++-
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~sv 747 (806)
T 1ypw_A 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp ------------------CCTTTTTTSSCCCCCC-----
T ss_pred hhhhhcccccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 2588888888877766543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.4e-28 Score=265.05 Aligned_cols=248 Identities=40% Similarity=0.715 Sum_probs=218.6
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
..+.+.|++|+|++.+++.+.+.+..++.+++.|..+++.++.++||+||||||||++|+++|+.++.+++.++++++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q 014525 243 MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l 322 (423)
.+.|.....++.+|..+....|+++||||+|.+++++..... ......+.+++..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCS---HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccc---hHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 999999999999999999989999999999999887643221 22233445556666666667789999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC------
Q 014525 323 DPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDA------ 396 (423)
Q Consensus 323 ~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~------ 396 (423)
++++.+++||+..+.++.|+.++|.+|++.++..+.+..+.++..++..+.|++++++..+|.+|...++++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999999888888999999999999999999999999998877643
Q ss_pred -----------CCcCHHHHHHHHHHHHH
Q 014525 397 -----------TEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 397 -----------~~It~~d~~~al~~~~~ 413 (423)
..++.+|+..++....+
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCc
Confidence 24677788888776644
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=2e-27 Score=227.52 Aligned_cols=178 Identities=21% Similarity=0.348 Sum_probs=135.8
Q ss_pred hCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHH----HhCCCeEEEECCchh
Q 014525 199 LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA----KEKSPCIIFIDEIDA 274 (423)
Q Consensus 199 ~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~ 274 (423)
.+.++|.++||+||||||||++|+++|++++.+|+.++++++.+.+.|..++.++.+|..+ +...|+||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3667889999999999999999999999999999999999999999999999999999888 577899999999999
Q ss_pred hhccCCCCC--CCCcHHHHHHHHHHHHhhc--------CCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHH
Q 014525 275 IGTKRFDSE--VSGDREVQRTMLELLNQLD--------GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEE 344 (423)
Q Consensus 275 l~~~r~~~~--~~~~~~~~~~l~~ll~~~~--------~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 344 (423)
+++.+.+.. ......++..|+++++... ......+++||+|||.++.++++++|+|||+..+.+ |+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHH
Confidence 987543211 1123356677777776332 222446799999999999999999999999998874 6999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHH
Q 014525 345 ARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKA 382 (423)
Q Consensus 345 ~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~ 382 (423)
+|.+|++.++... .++...++..+.||++++|..
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 9999999887643 466888999999999887753
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=1.9e-23 Score=201.02 Aligned_cols=223 Identities=21% Similarity=0.252 Sum_probs=169.5
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCC---CCceEEcCCCCChhHHHHHHHHHh-------CCcEEEEccch
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPP---KGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGPQ 239 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~---~~vLl~Gp~GtGKT~la~ala~~l-------~~~~i~v~~~~ 239 (423)
.+|+|++.+++.+.+.+..+. .+..+...|+.++ .++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 379999999999999887644 3566667776543 359999999999999999999988 34899999999
Q ss_pred hhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 240 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
+...+.|.....+..+|..+ .++||||||+|.+++.+.+ ...+...+..|+.+++.. ..++++|+++|.+
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~ 179 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN-----RDDLVVILAGYAD 179 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC-----CCCEEEEEeCChH
Confidence 99999998888777777766 4589999999999865432 223567777777777752 3567889998865
Q ss_pred C-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHh-------CCCCcHHHHHHHHHH
Q 014525 320 D-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARS-------TDDFNGAQLKAVCVE 386 (423)
Q Consensus 320 ~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~-------~~g~s~~dl~~l~~~ 386 (423)
. .++|++++ ||+.++.|++|+.+++..|++.++...+..- +..+..++.. .+..+++++.+++..
T Consensus 180 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 180 RMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 3 25789998 9999999999999999999999998765542 2224556555 455679999999999
Q ss_pred HHHHHHHh----CCCCcCHHHHH
Q 014525 387 AGMLALRR----DATEVNHEDFN 405 (423)
Q Consensus 387 A~~~A~~~----~~~~It~~d~~ 405 (423)
|...+..+ ....++.+++.
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHh
Confidence 99766554 33455555544
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.7e-24 Score=219.79 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=92.8
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccchhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLVQ 242 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~l~~ 242 (423)
|...|++++|++.+++.+...+.. ...|..+++++||+||||||||++|+++|++++ .+|+.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 456789999999999988876642 123556778999999999999999999999998 9999999999999
Q ss_pred hhhhchHHHHHHHHHHH---HhCCCeEEEECCchhhhccCCCC
Q 014525 243 MFIGDGAKLVRDAFQLA---KEKSPCIIFIDEIDAIGTKRFDS 282 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~r~~~ 282 (423)
.+.|..+. +..+|..+ +...|+||||||+|.+++++.+.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence 99999887 88899998 77889999999999999887544
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=1.5e-22 Score=199.40 Aligned_cols=220 Identities=20% Similarity=0.257 Sum_probs=159.5
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccchhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQ 242 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~l~~ 242 (423)
|...|++++|++..++.+....... ..|..+++++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 3455999999999988866544221 113345678999999999999999999999974 888888766433
Q ss_pred hhhhc-------------------------------------------------hHHHHHHHHHHHHh-----C----CC
Q 014525 243 MFIGD-------------------------------------------------GAKLVRDAFQLAKE-----K----SP 264 (423)
Q Consensus 243 ~~~g~-------------------------------------------------~~~~~~~~~~~a~~-----~----~~ 264 (423)
.+.+. ....++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 22111 12223333333321 1 26
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc-----------CCCCCCChhhhcCCCcc
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT-----------NRADILDPALMRSGRLD 333 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt-----------n~~~~l~~~l~~~~Rf~ 333 (423)
+||||||+|.+. .+.++.|+.+++. ....++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~-----------~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD-----------IESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB-----------HHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC-----------hHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 799999999983 4555666555532 22245555554 347789999999 996
Q ss_pred eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 334 RKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 334 ~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
. +.|++|+.+++..|++.++...+.. .+..+..++..+.+.+++++.++|..|...|..++...||.+|+.+++..+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5 7999999999999999888764443 223477888888856899999999999999999999999999999999873
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=7e-22 Score=192.58 Aligned_cols=217 Identities=19% Similarity=0.199 Sum_probs=168.8
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
.+.+|++++|++..++.+...+...... -.++.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 4468999999999999999988643221 13556899999999999999999999999999999997652
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC-------------CCCCCeE
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-------------SSDDRIK 311 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-------------~~~~~v~ 311 (423)
..+.+...+.. ...+++|||||||.+ ....+..|+..++..... ....+++
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 12222222222 346789999999997 356777888887754310 0011488
Q ss_pred EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 312 VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
+|++||....+++++++ ||+.++.|++|+.+++..+++.++...+.. .+..+..++.. ++.+++++.+++..+...
T Consensus 157 ~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~-~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKR-SRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHT-TTTCHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HCcCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999988876644 22336677774 455789999999999888
Q ss_pred HHHhCCCCcCHHHHHHHHHHH
Q 014525 391 ALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 391 A~~~~~~~It~~d~~~al~~~ 411 (423)
|.......|+.+++..++...
T Consensus 234 a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHHH
T ss_pred HHhhcCCccCHHHHHHHHHHh
Confidence 888888889999999988764
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.88 E-value=2.4e-21 Score=187.38 Aligned_cols=218 Identities=20% Similarity=0.260 Sum_probs=166.6
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
...+.+|++++|.+..++.+...+..... .+ .++.++||+||||||||++|+++++.++.+++.++|+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 34456899999999999999887754221 11 24578999999999999999999999999999999876522
Q ss_pred hhhhchHHHHHHHHHHHHh--CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC-----CC--------CC
Q 014525 243 MFIGDGAKLVRDAFQLAKE--KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-----FS--------SD 307 (423)
Q Consensus 243 ~~~g~~~~~~~~~~~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~-----~~--------~~ 307 (423)
.. .++..... ..+++|||||+|.+. ...+..+..+++.... .. ..
T Consensus 77 ------~~---~l~~~l~~~~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 77 ------PG---DLAAILANSLEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp ------HH---HHHHHHTTTCCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred ------hH---HHHHHHHHhccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 12 22222322 457899999999973 4567778888876420 00 11
Q ss_pred CCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHH
Q 014525 308 DRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVE 386 (423)
Q Consensus 308 ~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~ 386 (423)
.++.+|++||.+..+++++.+ ||+.++.+++|+.+++..++..++...+..- +..+..++..+.| +++.+.+++..
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 357899999999999999998 9988999999999999999999887655432 2236778888755 68999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 387 AGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 387 A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
+...|.......|+.+++..++..+
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 8877766667789999998887654
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.87 E-value=1.5e-24 Score=236.08 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=152.6
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCC----CCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV----RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 240 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l 240 (423)
.+.+|+|++.+++.+...+..... |+ .|..++||+||||||||++|+++|+.+ +.+|+.++|+++
T Consensus 556 l~~~viG~~~a~~~l~~~i~~~~~--------g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 556 LHKRVVGQDEAIRAVADAIRRARA--------GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHGG--------GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred HhcccCCcHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 457899999999999998864321 21 123479999999999999999999998 789999999877
Q ss_pred hhh-----hhhchHHH-----HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC---
Q 014525 241 VQM-----FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD--- 307 (423)
Q Consensus 241 ~~~-----~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~--- 307 (423)
... .+|...+. ...++..++..+++|||||||+.+ ++++++.|+++++...-....
T Consensus 628 ~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 628 MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp CSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCC
T ss_pred cchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCE
Confidence 543 22221111 124566667778899999999986 678899999999865422222
Q ss_pred ---CCeEEEEEcCC--------------------------CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC-
Q 014525 308 ---DRIKVIAATNR--------------------------ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM- 357 (423)
Q Consensus 308 ---~~v~vI~ttn~--------------------------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~- 357 (423)
.+++||+|||. ...+.|+|++ ||+.++.|++|+.+++..|++.++..+
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 37889999997 2357899998 999999999999999999998887632
Q ss_pred ------CCC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh
Q 014525 358 ------NVH---PDVNFEELARSTD--DFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 358 ------~~~---~~~~l~~la~~~~--g~s~~dl~~l~~~A~~~A~~~ 394 (423)
+.. ++..+..|+...+ .++.++|+++++.+...++.+
T Consensus 775 ~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 775 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 111 1223677787766 678999999999988776544
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=2.3e-21 Score=186.10 Aligned_cols=240 Identities=24% Similarity=0.289 Sum_probs=161.7
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhh-CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-hhhhc
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKL-GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGD 247 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~-g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-~~~g~ 247 (423)
++++|++.+++.+...+..+.....+.... +-.++.++||+||||||||++|+++|+.++.+++.++|+.+.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 468999999999998886533221111110 0134678999999999999999999999999999999998865 45553
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEECCchhhhccCCCCCCCC-cHHHHHHHHHHHHhhcC-----CCCCCCeEEEEE
Q 014525 248 G-AKLVRDAFQLA-----KEKSPCIIFIDEIDAIGTKRFDSEVSG-DREVQRTMLELLNQLDG-----FSSDDRIKVIAA 315 (423)
Q Consensus 248 ~-~~~~~~~~~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~-~~~~~~~l~~ll~~~~~-----~~~~~~v~vI~t 315 (423)
. ...+..++..+ ....++||||||+|.+.+...+..... ...+++.|+++++.... .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 33455555422 112368999999999986553221110 11235666666664210 012346788888
Q ss_pred c----CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh-----------hcCCCC---CCCCHHHHHHhCC----
Q 014525 316 T----NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHS-----------RKMNVH---PDVNFEELARSTD---- 373 (423)
Q Consensus 316 t----n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~-----------~~~~~~---~~~~l~~la~~~~---- 373 (423)
+ +.+..+++++.+ ||+..+.|++|+.+++.+|++... ...+.. ++..+..|+..++
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4 567789999998 999899999999999999998311 112211 1223667777663
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHhC-----C-CCcCHHHHHHHHHHH
Q 014525 374 ---DFNGAQLKAVCVEAGMLALRRD-----A-TEVNHEDFNEGIIQV 411 (423)
Q Consensus 374 ---g~s~~dl~~l~~~A~~~A~~~~-----~-~~It~~d~~~al~~~ 411 (423)
+.+++++.+++..+...+..+. . ..||.+|+.+++...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 4688999999998875543221 1 259999999998754
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.86 E-value=3.4e-20 Score=183.11 Aligned_cols=226 Identities=18% Similarity=0.210 Sum_probs=165.3
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEcc
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAG 237 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~ 237 (423)
..+++++|.+..++.+...+...+.. ..+++++|+||||||||++|+++++.+ +.+++.++|
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34588999999999999977543322 356789999999999999999999988 788999998
Q ss_pred chhhhhh----------------hhc-hHHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHH
Q 014525 238 PQLVQMF----------------IGD-GAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN 299 (423)
Q Consensus 238 ~~l~~~~----------------~g~-~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~ 299 (423)
......+ .|. .......++..... ..|.||+|||+|.+...+ ..+..+..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 7532110 111 12223444444433 347899999999986321 13567777777
Q ss_pred hhcCCCCCCCeEEEEEcCCC---CCCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHhhc----CCCCCCCCHHHHHHh
Q 014525 300 QLDGFSSDDRIKVIAATNRA---DILDPALMRSGRLDR-KIEFPHPTEEARARILQIHSRK----MNVHPDVNFEELARS 371 (423)
Q Consensus 300 ~~~~~~~~~~v~vI~ttn~~---~~l~~~l~~~~Rf~~-~i~~~~p~~~~r~~Il~~~~~~----~~~~~~~~l~~la~~ 371 (423)
.........++.+|++||.+ ..+++.+.+ ||.. .+.|++|+.+++.+|++.++.. ..++ +..+..++..
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHH
Confidence 66543224578899999887 678999998 8875 8999999999999999988764 2222 3336677777
Q ss_pred CC--CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 372 TD--DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 372 ~~--g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
+. ..+++.+.++|..|...|...+...|+.+|+..|+..+..
T Consensus 235 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 235 AAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 66 1368889999999999888888889999999999988754
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=8.8e-22 Score=203.57 Aligned_cols=226 Identities=20% Similarity=0.290 Sum_probs=148.2
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh----
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ---- 242 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~---- 242 (423)
..+++++|+++.++.+.+.+....... .. ++.+++|+||||||||++|+++|..++.+++.++++.+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 456789999999999988765332221 11 4567999999999999999999999999999999876543
Q ss_pred -----hhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--CCC--------C
Q 014525 243 -----MFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSS--------D 307 (423)
Q Consensus 243 -----~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--~~~--------~ 307 (423)
.|+|...+.+...|..+....| |+||||||.+.+.+. .+.+..|+++++.... +.. .
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4666666666677776665554 999999999975431 1234455555543221 111 1
Q ss_pred CCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh-----hcCCCCC------CCCHHHHHH-hCCCC
Q 014525 308 DRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHS-----RKMNVHP------DVNFEELAR-STDDF 375 (423)
Q Consensus 308 ~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~~------~~~l~~la~-~~~g~ 375 (423)
.+++||+|||.++.++++|++ ||. ++.|++|+.+++..|++.++ ...++.. +..+..++. +++..
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 994 78999999999999998876 2223321 122455554 45445
Q ss_pred cHHHHHHHHHHHH----HHHHHh--CCCCcCHHHHHHHHHH
Q 014525 376 NGAQLKAVCVEAG----MLALRR--DATEVNHEDFNEGIIQ 410 (423)
Q Consensus 376 s~~dl~~l~~~A~----~~A~~~--~~~~It~~d~~~al~~ 410 (423)
+.+++++.+..++ ..++.. ....||.+|+.+++..
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 5666665544444 444333 3347999999988753
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.85 E-value=1.6e-20 Score=185.03 Aligned_cols=235 Identities=21% Similarity=0.290 Sum_probs=159.6
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhh-hC-CCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh-hhhc
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQK-LG-VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGD 247 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~-~g-~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~-~~g~ 247 (423)
.|+|++.+++.+...+............ .+ ..++.++||+||||||||++|+++|+.++.+|+.++|+.+... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999988543222110000 01 1256789999999999999999999999999999999988754 7776
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEECCchhhhccCCCCCCCCcH---HHHHHHHHHHHhhc----------------C
Q 014525 248 G-AKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEVSGDR---EVQRTMLELLNQLD----------------G 303 (423)
Q Consensus 248 ~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~r~~~~~~~~~---~~~~~l~~ll~~~~----------------~ 303 (423)
. .+.+..++..+ ....++||||||+|.+.+.+.+...+.+. .++..|+++++... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 45556666654 34457899999999998776444332222 27778888887210 0
Q ss_pred CCCCCCeEEEEEcCCC----------CC-----------------------------------CChhhhcCCCcceEEEc
Q 014525 304 FSSDDRIKVIAATNRA----------DI-----------------------------------LDPALMRSGRLDRKIEF 338 (423)
Q Consensus 304 ~~~~~~v~vI~ttn~~----------~~-----------------------------------l~~~l~~~~Rf~~~i~~ 338 (423)
+-...|+++|+++|.. .. +.|+|++ ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 1122456666666642 11 7899998 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhh-------cCCCC---CCCCHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHhCCC-----
Q 014525 339 PHPTEEARARILQI----HSR-------KMNVH---PDVNFEELAR--STDDFNGAQLKAVCVEAGMLALRRDAT----- 397 (423)
Q Consensus 339 ~~p~~~~r~~Il~~----~~~-------~~~~~---~~~~l~~la~--~~~g~s~~dl~~l~~~A~~~A~~~~~~----- 397 (423)
++|+.+++.+|+.. ++. ..+.. .+..+..|+. ..+.+++++|++++..+...++.+...
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~ 333 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE 333 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999999999875 221 11221 1222566664 446677899999999999888776421
Q ss_pred --CcCHHHHHHH
Q 014525 398 --EVNHEDFNEG 407 (423)
Q Consensus 398 --~It~~d~~~a 407 (423)
.||.+++.+.
T Consensus 334 ~~~I~~~~v~~~ 345 (363)
T 3hws_A 334 KVVIDESVIDGQ 345 (363)
T ss_dssp EEECHHHHTTCC
T ss_pred eeEEcHHHHhCc
Confidence 4666666543
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.84 E-value=2.9e-20 Score=175.75 Aligned_cols=208 Identities=19% Similarity=0.242 Sum_probs=140.6
Q ss_pred CcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh-hhhhh
Q 014525 168 DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV-QMFIG 246 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~-~~~~g 246 (423)
....++|++..++.+........ ..+...+..++.++||+||||||||++|+++|+.++.+|+.+++++.. +...+
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchH
Confidence 34568899998888877522111 122333445677899999999999999999999999999999887532 11112
Q ss_pred chHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC-CCCCeEEEEEcCCCCCCCh-
Q 014525 247 DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS-SDDRIKVIAATNRADILDP- 324 (423)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~v~vI~ttn~~~~l~~- 324 (423)
.....++.+|..+....++||||||+|.+++.+..+. .....+++.|..+ ++... ...+++||+|||.++.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhhcchh
Confidence 2235567788888878889999999999976542211 1233344444443 33322 3347889999999887777
Q ss_pred hhhcCCCcceEEEcCCCCH-HHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCC----cHHHHHHHHHHHH
Q 014525 325 ALMRSGRLDRKIEFPHPTE-EARARILQIHSRKMNVHPDVNFEELARSTDDF----NGAQLKAVCVEAG 388 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~----s~~dl~~l~~~A~ 388 (423)
.+.+ ||+..+.+|+++. ++...++.. ...+. +.++..++..+.|+ +.+++.+++..|.
T Consensus 184 ~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~~-~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 184 EMLN--AFSTTIHVPNIATGEQLLEALEL---LGNFK-DKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp TCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCSC-HHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhhc--ccceEEcCCCccHHHHHHHHHHh---cCCCC-HHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 4555 9999999988776 555555443 22333 34578888888886 5677777776654
No 41
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.83 E-value=8.2e-20 Score=178.44 Aligned_cols=224 Identities=19% Similarity=0.222 Sum_probs=149.4
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-------c-----
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-------T----- 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-------~----- 231 (423)
.++.+|++++|++..++.+...... ..+.++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3567899999999977665443321 12346999999999999999999998863 2
Q ss_pred ---------------------EEEEccchhhhhhhhchHHHHHHHHHHH---------HhCCCeEEEECCchhhhccCCC
Q 014525 232 ---------------------FLKLAGPQLVQMFIGDGAKLVRDAFQLA---------KEKSPCIIFIDEIDAIGTKRFD 281 (423)
Q Consensus 232 ---------------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a---------~~~~~~vl~iDEid~l~~~r~~ 281 (423)
++.+........+.|... +...+... ....++||||||+|.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l------ 156 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL------ 156 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC------
Confidence 222111111111222100 01111111 1123689999999997
Q ss_pred CCCCCcHHHHHHHHHHHHhhc----CCCC----CCCeEEEEEcCCCC-CCChhhhcCCCcceEEEcCCC-CHHHHHHHHH
Q 014525 282 SEVSGDREVQRTMLELLNQLD----GFSS----DDRIKVIAATNRAD-ILDPALMRSGRLDRKIEFPHP-TEEARARILQ 351 (423)
Q Consensus 282 ~~~~~~~~~~~~l~~ll~~~~----~~~~----~~~v~vI~ttn~~~-~l~~~l~~~~Rf~~~i~~~~p-~~~~r~~Il~ 351 (423)
....+..|+++++... .... ..++++|+|+|... .+++++++ ||+..+.+++| +.+.+.+|++
T Consensus 157 -----~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 157 -----EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp -----CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 4567778888887631 1111 12788999999754 89999999 99988999998 5677778876
Q ss_pred HHh-------------------------------hcCCCCCCCCHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHhCCC
Q 014525 352 IHS-------------------------------RKMNVHPDVNFEELARSTDD---FNGAQLKAVCVEAGMLALRRDAT 397 (423)
Q Consensus 352 ~~~-------------------------------~~~~~~~~~~l~~la~~~~g---~s~~dl~~l~~~A~~~A~~~~~~ 397 (423)
..+ ..+.++. ..+..|+....+ .+.+.+.++++.|...|..+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~-~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~ 308 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGELTLLRSARALAALEGAT 308 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 521 1122222 224555555443 25799999999999999888888
Q ss_pred CcCHHHHHHHHHHHHHhhh
Q 014525 398 EVNHEDFNEGIIQVQAKKK 416 (423)
Q Consensus 398 ~It~~d~~~al~~~~~~~~ 416 (423)
.|+.+|+.+|+..+..+..
T Consensus 309 ~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 309 AVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp BCCHHHHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHHHHHHhhcc
Confidence 9999999999999876553
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.83 E-value=6.2e-19 Score=159.91 Aligned_cols=202 Identities=20% Similarity=0.235 Sum_probs=149.5
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccc
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGP 238 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~ 238 (423)
.++..|++++|.+..++.+...+... .+.+++|+||||||||++|+++++.+ ...++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 35578999999999999999887431 23359999999999999999999986 4568888876
Q ss_pred hhhhhhhhchHHHHHHHHHHH-H-----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 239 QLVQMFIGDGAKLVRDAFQLA-K-----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~a-~-----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
..... ..+...+... . ...+.+|+|||+|.+. ...+..+..+++.. ..++.+
T Consensus 78 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~-----~~~~~~ 135 (226)
T 2chg_A 78 DERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY-----SKSCRF 135 (226)
T ss_dssp CTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT-----TTTEEE
T ss_pred cccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHHHHHHHHHHHhc-----CCCCeE
Confidence 54321 1111222221 1 2457899999999973 34566677777652 346788
Q ss_pred EEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 313 IAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 313 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
|++||.+..+++++.+ |+. .+.+++|+.++...++..++...+.. .+..+..++..+.| +++.+.+++..++..+
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 9999999999999998 886 89999999999999999888654443 22236677776654 7788888888776543
Q ss_pred HHhCCCCcCHHHHHHHHH
Q 014525 392 LRRDATEVNHEDFNEGII 409 (423)
Q Consensus 392 ~~~~~~~It~~d~~~al~ 409 (423)
..||.+|+.+++.
T Consensus 212 -----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----EVVDADTIYQITA 224 (226)
T ss_dssp -----SCBCHHHHHHHHH
T ss_pred -----ceecHHHHHHHhc
Confidence 6899999999875
No 43
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.83 E-value=8.1e-20 Score=196.59 Aligned_cols=200 Identities=17% Similarity=0.279 Sum_probs=150.9
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCC----CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 241 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~ 241 (423)
..+++|++.+++.+...+..... |+. |..++||+||||||||++|+++|+.+ +.+|+.++|+++.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred hCcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 46799999999999998865332 222 22369999999999999999999998 6899999999998
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC------CCCCeEEEEE
Q 014525 242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS------SDDRIKVIAA 315 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~v~vI~t 315 (423)
+.+... ...++..++..+++||||||||.+ ++++++.|+++++...... ...+++||+|
T Consensus 562 ~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 562 EKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp SSCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred cccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 876554 223456667778899999999986 6789999999998754322 2347899999
Q ss_pred cCCCCC------------CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC-------CCC---CCCCHHHHHH--h
Q 014525 316 TNRADI------------LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM-------NVH---PDVNFEELAR--S 371 (423)
Q Consensus 316 tn~~~~------------l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~---~~~~l~~la~--~ 371 (423)
||.+.. +.|+|++ ||+.++.|++|+.+++..|++.++..+ +.. ++..+..|+. +
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 997654 8899998 999999999999999999998877543 111 1223566765 4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLALR 393 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A~~ 393 (423)
.+.++.++|+++++.+...++.
T Consensus 705 ~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp CTTTTTTTHHHHHHHHTHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH
Confidence 4567789999998887766554
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.82 E-value=5.8e-20 Score=197.85 Aligned_cols=199 Identities=19% Similarity=0.273 Sum_probs=150.9
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCC----CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh--
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVR----PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-- 243 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~-- 243 (423)
.+++|++.+++.+...+... ..|+. |..++||+||||||||++|+++|+.++.+|+.++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 45889999999998877532 22332 33469999999999999999999999999999999988653
Q ss_pred ----------hhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC------C
Q 014525 244 ----------FIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------D 307 (423)
Q Consensus 244 ----------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~------~ 307 (423)
|+|..++ ..++..++..+++||||||||.+ ++++++.|+++++....... -
T Consensus 530 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp CSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred HhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 4443322 23566677788899999999986 67899999999986432211 1
Q ss_pred CCeEEEEEcCCCC-------------------------CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC-----
Q 014525 308 DRIKVIAATNRAD-------------------------ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM----- 357 (423)
Q Consensus 308 ~~v~vI~ttn~~~-------------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~----- 357 (423)
.+++||+|||.+. .++|+|++ ||+.+|.|++|+.+++..|++.++..+
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999754 57899998 999999999999999999999887632
Q ss_pred ------CCCCCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 014525 358 ------NVHPDVNFEELARSTD--DFNGAQLKAVCVEAGMLAL 392 (423)
Q Consensus 358 ------~~~~~~~l~~la~~~~--g~s~~dl~~l~~~A~~~A~ 392 (423)
.++ +..+..|+...+ .+.++++.++++.+...++
T Consensus 675 ~~~~~~~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 675 QKGVSLEVS-QEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HTTEEEEEC-HHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred HCCcEEEeC-HHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 112 223566776553 3457899998888776543
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.82 E-value=5e-20 Score=177.07 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=150.0
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh--
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM-- 243 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~-- 243 (423)
..+++|++.+++.+...+....... .. .-+|..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~---~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGL---KD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTC---SC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCC---CC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 4568899999999999886532110 00 01233469999999999999999999988 567999999876432
Q ss_pred ---hhhchHHH-----HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC------CCC
Q 014525 244 ---FIGDGAKL-----VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------DDR 309 (423)
Q Consensus 244 ---~~g~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~ 309 (423)
++|...+. ...+.......+++||||||+|.+ ++.++..|+++++....... -.+
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 22211000 013445555667799999999997 56788899999886432211 136
Q ss_pred eEEEEEcCC--------------------------CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC------
Q 014525 310 IKVIAATNR--------------------------ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM------ 357 (423)
Q Consensus 310 v~vI~ttn~--------------------------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~------ 357 (423)
+++|+|||. ...++++|++ ||+.++.|++|+.+++..|++.++...
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 779999998 4468899998 999999999999999999999877542
Q ss_pred -CCC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh
Q 014525 358 -NVH---PDVNFEELARSTD--DFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 358 -~~~---~~~~l~~la~~~~--g~s~~dl~~l~~~A~~~A~~~ 394 (423)
... .+..+..|+...+ ++++++|++++..++..+..+
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 111 2223677777777 678999999999888766543
No 46
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.82 E-value=2.6e-19 Score=177.04 Aligned_cols=213 Identities=18% Similarity=0.205 Sum_probs=155.6
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-----------CCcEEEEccc
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----------NATFLKLAGP 238 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----------~~~~i~v~~~ 238 (423)
++++|.+..++.+...+...... ..+++++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999999887543332 345689999999999999999999987 8899999987
Q ss_pred hhh-hh----------h-------hhc-hHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHH-HHHHH
Q 014525 239 QLV-QM----------F-------IGD-GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRT-MLELL 298 (423)
Q Consensus 239 ~l~-~~----------~-------~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~-l~~ll 298 (423)
... .. . .|. ....+..++..+....+ ||+|||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 543 11 1 011 12334444444444444 99999999986431 1123 44444
Q ss_pred HhhcCCCCCCCeEEEEEcCCC---CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc----CCCCCCCCHHHHHHh
Q 014525 299 NQLDGFSSDDRIKVIAATNRA---DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK----MNVHPDVNFEELARS 371 (423)
Q Consensus 299 ~~~~~~~~~~~v~vI~ttn~~---~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~~~~~l~~la~~ 371 (423)
... .++.+|++||.+ ..+++.+.+ ||...+.|++|+.++..+|+..++.. ..++ +..+..++..
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 332 678899999977 678999998 88789999999999999999988763 2222 2235667776
Q ss_pred CC--CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 372 TD--DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 372 ~~--g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
+. ..+++.+.++|+.|...|. +...|+.+|+..++..+..
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 65 1367888889999987775 5578999999999988764
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=5.5e-19 Score=171.20 Aligned_cols=218 Identities=16% Similarity=0.215 Sum_probs=150.2
Q ss_pred CCCCccccc-Cch--HHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 165 PTEDYNDIG-GLE--KQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 165 ~~~~~~~i~-G~~--~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
|..+|++++ |.. .+...+...+..+ + ..+++++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456788887 543 3344444433221 1 235689999999999999999999998 8999999999
Q ss_pred hhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 239 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
++...+.+.........|..... .+.||||||+|.+.. ....+..+..+++.... .+..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~~---~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLYL---LEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHHH---TTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 88766554433222222322222 368999999999853 23456666666665321 234566667666
Q ss_pred CC---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH--
Q 014525 319 AD---ILDPALMRSGRLD--RKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML-- 390 (423)
Q Consensus 319 ~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~-- 390 (423)
+. .+++++.+ ||. .++.+++ +.+++..|++.++...++. ++..+..|+..+ .+.+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCH
Confidence 65 68999998 886 6899999 9999999999988765543 222367788888 4788999988887765
Q ss_pred -HHH-hCCCCc-CHHHHHHHHHHH
Q 014525 391 -ALR-RDATEV-NHEDFNEGIIQV 411 (423)
Q Consensus 391 -A~~-~~~~~I-t~~d~~~al~~~ 411 (423)
++. .....| |.+++.+++...
T Consensus 217 ~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 217 EGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCHHHHHHHHHHH
Confidence 111 223457 888888888764
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.81 E-value=1.2e-19 Score=176.26 Aligned_cols=219 Identities=20% Similarity=0.186 Sum_probs=155.9
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh--hhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV--QMF 244 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~--~~~ 244 (423)
..+.+++|++..++.+...+.. ++++||+||||||||++|+++|+.++.+++.+++.... ...
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 4567899999999888876632 35899999999999999999999999999999874211 111
Q ss_pred hhchH-HHHHHHHHHHHhCC---CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC------CCCCCCeEEEE
Q 014525 245 IGDGA-KLVRDAFQLAKEKS---PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG------FSSDDRIKVIA 314 (423)
Q Consensus 245 ~g~~~-~~~~~~~~~a~~~~---~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~------~~~~~~v~vI~ 314 (423)
.|... ......+ ..... .+||||||++.+ ++..+..+.+.++.... .....+++||+
T Consensus 89 ~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 89 IGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp HEEEEEETTTTEE--EEEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred CCceeecCCCCce--EeccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 11100 0000000 00111 279999999996 45677888888876321 11234678889
Q ss_pred EcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-----------------------CCCCHH
Q 014525 315 ATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-----------------------PDVNFE 366 (423)
Q Consensus 315 ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----------------------~~~~l~ 366 (423)
|+|+.+ .+++++++ ||+..+.+++|+.+++.+|++.+....... ++..+.
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 233 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEK 233 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHH
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHH
Confidence 998654 38999999 999899999999999999999887543211 000123
Q ss_pred HHHHh-------------------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 367 ELARS-------------------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 367 ~la~~-------------------~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
.++.. ..|.|++.+..+++.|...|..+++..|+.+|+.+++..+..+.
T Consensus 234 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 234 YIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 33321 12568999999999999999999999999999999999887543
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.81 E-value=1e-18 Score=176.21 Aligned_cols=220 Identities=17% Similarity=0.255 Sum_probs=155.4
Q ss_pred CCCCccccc-CchHHH--HHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEc
Q 014525 165 PTEDYNDIG-GLEKQI--QELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLA 236 (423)
Q Consensus 165 ~~~~~~~i~-G~~~~~--~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~ 236 (423)
|..+|++++ |..... ..+...+. . .+ . +++++|+||||||||+||+++++.+ +.++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~----~------~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAK----H------PG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHH----S------TT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHh----C------CC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 446899987 655443 22222221 1 11 1 5689999999999999999999988 78899999
Q ss_pred cchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 237 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 237 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
+..+...+.+.........|.......+.||||||+|.+.. ....+..++.+++.+.. .+..+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~~---~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELHD---SGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHHT---TTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH---CCCeEEEEEC
Confidence 99886655443222111223333333678999999999863 22456677777765432 2345555555
Q ss_pred CCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 317 NRADI---LDPALMRSGRLD--RKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 317 n~~~~---l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
+.+.. +++++++ ||. .++.+++|+.+++..|++..+...++. ++..+..|+..+.| +++++.+++..+...
T Consensus 236 ~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 236 REPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_dssp SCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 55554 8899998 886 789999999999999999888654433 22337888888765 899999999999988
Q ss_pred HHHhCCCCcCHHHHHHHHHHHH
Q 014525 391 ALRRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 391 A~~~~~~~It~~d~~~al~~~~ 412 (423)
|...+ ..||.+++.++++...
T Consensus 313 a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 313 KETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHSS-SCCCHHHHHHHTSTTT
T ss_pred HHHhC-CCCCHHHHHHHHHHHh
Confidence 86655 4699999999988764
No 50
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.81 E-value=3.1e-19 Score=179.96 Aligned_cols=205 Identities=22% Similarity=0.264 Sum_probs=148.3
Q ss_pred CCCCcccccCchHHH---HHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 165 PTEDYNDIGGLEKQI---QELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~---~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+.+|++++|++..+ ..+...+... ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 457899999999999 6777766431 22579999999999999999999999999999987542
Q ss_pred hhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc-
Q 014525 242 QMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT- 316 (423)
Q Consensus 242 ~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt- 316 (423)
+...++.++..+. ...++||||||||.+.. ..+..|+..++. +.+++|++|
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~-------~~v~lI~att 142 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIED-------GTITFIGATT 142 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEEEEEES
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhc-------CceEEEecCC
Confidence 1223344444433 34679999999999843 334556666654 346667666
Q ss_pred -CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC--------CCCCHHHHHHhCCCCcHHHHHHHHHHH
Q 014525 317 -NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH--------PDVNFEELARSTDDFNGAQLKAVCVEA 387 (423)
Q Consensus 317 -n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~--------~~~~l~~la~~~~g~s~~dl~~l~~~A 387 (423)
|....+++++++ |+. ++.|++|+.+++..+++.++...... .+..+..|+..+. .+.+.+.+++..+
T Consensus 143 ~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~-Gd~R~lln~Le~a 218 (447)
T 3pvs_A 143 ENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN-GDARRALNTLEMM 218 (447)
T ss_dssp SCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC-SCHHHHHHHHHHH
T ss_pred CCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 444579999999 885 78899999999999999988762211 1223677777755 4789999999998
Q ss_pred HHHHHHh--CCCCcCHHHHHHHHHHH
Q 014525 388 GMLALRR--DATEVNHEDFNEGIIQV 411 (423)
Q Consensus 388 ~~~A~~~--~~~~It~~d~~~al~~~ 411 (423)
...+... +...||.+++.+++...
T Consensus 219 ~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 219 ADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHhcccccCCCCccCHHHHHHHHhhh
Confidence 8776422 34579999999887643
No 51
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.80 E-value=1.8e-19 Score=178.28 Aligned_cols=237 Identities=20% Similarity=0.213 Sum_probs=149.6
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHh-----------------hhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQ-----------------KLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATF 232 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~-----------------~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~ 232 (423)
+.|+|++.+++.+...+..+........ .-...++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4589999999999988743322211100 01123566899999999999999999999999999
Q ss_pred EEEccchhh-hhhhhch-HHHHHHHHHHH----HhCCCeEEEECCchhhhccCCCCCC---CCcHHHHHHHHHHHHhhcC
Q 014525 233 LKLAGPQLV-QMFIGDG-AKLVRDAFQLA----KEKSPCIIFIDEIDAIGTKRFDSEV---SGDREVQRTMLELLNQLDG 303 (423)
Q Consensus 233 i~v~~~~l~-~~~~g~~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~l~~ll~~~~~ 303 (423)
+.++|+.+. ..+.|.. ...+..++... ....++||||||+|.+...+..... .....++..|+++++....
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 33344444432 2335789999999999765422111 1122477888888874210
Q ss_pred -C---------------CCCCCeEEEEEcCC-----------------------------------------CCCCChhh
Q 014525 304 -F---------------SSDDRIKVIAATNR-----------------------------------------ADILDPAL 326 (423)
Q Consensus 304 -~---------------~~~~~v~vI~ttn~-----------------------------------------~~~l~~~l 326 (423)
+ -...++++|+++|. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 01245677877762 11367888
Q ss_pred hcCCCcceEEEcCCCCHHHHHHHHHH----Hhh-------cCCCC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHH
Q 014525 327 MRSGRLDRKIEFPHPTEEARARILQI----HSR-------KMNVH---PDVNFEELARSTD--DFNGAQLKAVCVEAGML 390 (423)
Q Consensus 327 ~~~~Rf~~~i~~~~p~~~~r~~Il~~----~~~-------~~~~~---~~~~l~~la~~~~--g~s~~dl~~l~~~A~~~ 390 (423)
.+ ||+.++.|++++.++...|+.. ++. ..+.. .+..+..|+...+ ..+++++.+++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 88 9999999999999999999862 111 11111 1223566776654 35789999999999887
Q ss_pred HHHhCC------CCcCHHHHHHHH
Q 014525 391 ALRRDA------TEVNHEDFNEGI 408 (423)
Q Consensus 391 A~~~~~------~~It~~d~~~al 408 (423)
++.+.. ..||.+++..+.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHhhccCCCCCEEEEeHHHhcCCC
Confidence 766422 258988887644
No 52
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=2.5e-20 Score=186.02 Aligned_cols=169 Identities=21% Similarity=0.247 Sum_probs=82.9
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCC-CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh-hhhhc
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGV-RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGD 247 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~-~~~g~ 247 (423)
++|+|++.+++.+..++..+..++..+..++. .+++++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 47899999999999988776655554444432 25678999999999999999999999999999999999888 58885
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE-cCCCCCCChh
Q 014525 248 -GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA-TNRADILDPA 325 (423)
Q Consensus 248 -~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~t-tn~~~~l~~~ 325 (423)
.+..++.+|..+... +++||++.+..... ...-.+++.+++..++++.+..++ +++ ||+++.|+++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~~------~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARAE------DVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccch------hhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788899999888763 45888887653321 112235667777778777665554 454 9999999999
Q ss_pred hhcCCCcceEEEcCCCCHH-HHHHHH
Q 014525 326 LMRSGRLDRKIEFPHPTEE-ARARIL 350 (423)
Q Consensus 326 l~~~~Rf~~~i~~~~p~~~-~r~~Il 350 (423)
|+++||||..|+++.|+.. .+.+|+
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 677775
No 53
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=5.9e-18 Score=166.80 Aligned_cols=224 Identities=21% Similarity=0.266 Sum_probs=157.7
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh------CCcEEEEccchh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT------NATFLKLAGPQL 240 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l------~~~~i~v~~~~l 240 (423)
..+++++|.+..++.+.+.+...+.. ..+..++|+||||||||++++++++.+ +.+++.++|...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 44578999999999999877543222 345689999999999999999999988 888999997643
Q ss_pred hh------hh----------hhc-hHHHHHHHHHHHHhCC-CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc
Q 014525 241 VQ------MF----------IGD-GAKLVRDAFQLAKEKS-PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 302 (423)
Q Consensus 241 ~~------~~----------~g~-~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~ 302 (423)
.. .. .+. .......++....... |.||+|||++.+.... +.+ .+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~---~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDD---ILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CST---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCH---HHHHHhhchh
Confidence 21 10 111 2222444444444433 8999999999986432 112 3444444443
Q ss_pred CCCCCCCeEEEEEcCCC---CCCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHhhcC----CCCCCCCHHHHHHhCCC
Q 014525 303 GFSSDDRIKVIAATNRA---DILDPALMRSGRLD-RKIEFPHPTEEARARILQIHSRKM----NVHPDVNFEELARSTDD 374 (423)
Q Consensus 303 ~~~~~~~v~vI~ttn~~---~~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~----~~~~~~~l~~la~~~~g 374 (423)
.. ...++.+|++|+.+ ..+++.+.+ ||. ..+.|++|+.++..+++...+... .+. +..+..++..+..
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHH
Confidence 32 34578889998876 457888888 775 489999999999999999876532 222 2224556666651
Q ss_pred --CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 014525 375 --FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 375 --~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~ 413 (423)
.+++.+..+|..|...|...+...|+.+|+..|+..+..
T Consensus 234 ~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 367888889999999888888889999999999988764
No 54
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.79 E-value=6.3e-18 Score=155.12 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=146.0
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+..|++++|.+..++.+...+... ..++.++|+||||||||++++++++.+...
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567899999999999999877431 234579999999999999999999987432
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++... ......+..++..+. ...+.+|+|||+|.+ +...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHHHHHHH
Confidence 12222211 011223344444332 234789999999997 334555666
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 374 (423)
.+++. ...++.+|++||.+..+++.+.+ |+ ..+.+++|+.++..+++..++...+.. .+..+..++..+.|
T Consensus 148 ~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 148 KTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp HHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred HHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 66643 23578889999988889999988 75 789999999999999999888755433 22236778888866
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
+++.+.+++..|... ....||.+|+.+++
T Consensus 220 -~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 -SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp -CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred -CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 899999999888543 23489999999875
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.79 E-value=4.9e-18 Score=156.37 Aligned_cols=206 Identities=14% Similarity=0.142 Sum_probs=144.1
Q ss_pred CCCCcccccCc---hHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 165 PTEDYNDIGGL---EKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 165 ~~~~~~~i~G~---~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
|..+|++++|. ...++.+...+.. ..+++++|+||||||||++|+++++.+ +.+++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34678888872 3555555554421 145689999999999999999999987 4788899988
Q ss_pred hhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCe-EEEEEcC
Q 014525 239 QLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI-KVIAATN 317 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v-~vI~ttn 317 (423)
++...+... +.. ...+.+|+|||++.+.. ....+..+..+++.... .+.+ +|++++.
T Consensus 90 ~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVAE---QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHHH---HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCCCeEEEEcCC
Confidence 876543211 111 13468999999999853 22335566666654321 1233 4444444
Q ss_pred CCC---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 318 RAD---ILDPALMRSGRLD--RKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 318 ~~~---~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
.+. .+.+.+.+ ||. .++.+++|+.+++.+++..++...+..- +..+..++..+.| +.+++.+++..+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 443 45688888 776 8999999999999999999887655431 2236677777765 8899999999999888
Q ss_pred HHhCCCCcCHHHHHHHHH
Q 014525 392 LRRDATEVNHEDFNEGII 409 (423)
Q Consensus 392 ~~~~~~~It~~d~~~al~ 409 (423)
...+ ..||.+++.+++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 6554 4699999998874
No 56
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.79 E-value=1.3e-18 Score=163.71 Aligned_cols=211 Identities=19% Similarity=0.210 Sum_probs=136.3
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEccchhhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLVQM 243 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~~l~~~ 243 (423)
.+|++++|.+..++.+.+.+..... .+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 4789999999999999987764322 346899999999999999999999874 68999999876432
Q ss_pred -----hhhchHHHHHHH----HHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC------CCCC
Q 014525 244 -----FIGDGAKLVRDA----FQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF------SSDD 308 (423)
Q Consensus 244 -----~~g~~~~~~~~~----~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~------~~~~ 308 (423)
.+|...+..... ........+++|||||++.+ +...+..|+++++...-. ....
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 140 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQPLQV 140 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--CEEC
T ss_pred HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCcccccC
Confidence 122211100000 00111234589999999997 456788888888764210 1123
Q ss_pred CeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhc----CCCCC--CCC---HHHHH
Q 014525 309 RIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRK----MNVHP--DVN---FEELA 369 (423)
Q Consensus 309 ~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~~--~~~---l~~la 369 (423)
++.+|+|||.+ ..+.++|.+ ||. ..+.+|++.. ++...+++.++.. .+... .++ +..|.
T Consensus 141 ~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~ 218 (265)
T 2bjv_A 141 NVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLL 218 (265)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHH
T ss_pred CeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHH
Confidence 67899999974 357889988 885 4678887765 5666666655432 33211 222 45566
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 014525 370 RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404 (423)
Q Consensus 370 ~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 404 (423)
...+..+.+++.++++.+...+ ....|+.+|+
T Consensus 219 ~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 219 NYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred hCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 6666778899999999988665 3456766665
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=8.2e-18 Score=164.30 Aligned_cols=207 Identities=17% Similarity=0.184 Sum_probs=148.9
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC------CcEEEEcc
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN------ATFLKLAG 237 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~------~~~i~v~~ 237 (423)
..+..|++++|++..++.+...+... .+.++||+||||||||++|+++++.++ ..++.+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 45678999999999999998876421 223599999999999999999999864 46888887
Q ss_pred chhhhhhhhchHHHHHHHHHHHH----------------hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhh
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLAK----------------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQL 301 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a~----------------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~ 301 (423)
++.... ..++..+.... ...+.||+|||+|.+. ...+..+..+++..
T Consensus 98 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 98 SDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETY 160 (353)
T ss_dssp SSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT
T ss_pred ccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhc
Confidence 763211 11111111111 1345799999999973 45567777777763
Q ss_pred cCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHH
Q 014525 302 DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQL 380 (423)
Q Consensus 302 ~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl 380 (423)
. .++.+|+++|.+..+.+++.+ |+. .+.|++|+.++...++...+...++. .+..+..++..+.| +.+.+
T Consensus 161 ~-----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~ 231 (353)
T 1sxj_D 161 S-----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRG 231 (353)
T ss_dssp T-----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHH
T ss_pred C-----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 2 356677788989999999998 885 88999999999999999887654433 22346778888876 57778
Q ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHH
Q 014525 381 KAVCVEAGMLALRRDAT-EVNHEDFNEGII 409 (423)
Q Consensus 381 ~~l~~~A~~~A~~~~~~-~It~~d~~~al~ 409 (423)
.++++.+...+-..+.. .||.+|+.+++.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 232 ITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 88888777665444333 799999887654
No 58
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=2.6e-18 Score=166.38 Aligned_cols=203 Identities=19% Similarity=0.210 Sum_probs=139.7
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
..+.+|++++|++..++.+...+.. | ..++.+|++||||||||++|+++|+.++.+++.++++...
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 4557899999999999999988752 1 3455688889999999999999999999999999987642
Q ss_pred hhhchHHHHHHHHHH-HHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 244 FIGDGAKLVRDAFQL-AKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 244 ~~g~~~~~~~~~~~~-a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
...++..+.. +.. ..+.||||||+|.+. ..+.+..|..+++... .++.+|+|||.
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~----------~~~~~~~L~~~le~~~-----~~~~iI~~~n~ 145 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG----------LAESQRHLRSFMEAYS-----SNCSIIITANN 145 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG----------GHHHHHHHHHHHHHHG-----GGCEEEEEESS
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC----------cHHHHHHHHHHHHhCC-----CCcEEEEEeCC
Confidence 2223333332 222 256899999999984 1456777888887642 45788999999
Q ss_pred CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh-------hcCCCC-CC-CCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014525 319 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHS-------RKMNVH-PD-VNFEELARSTDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 319 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~-------~~~~~~-~~-~~l~~la~~~~g~s~~dl~~l~~~A~~ 389 (423)
+..+++++.+ || .++.|++|+.+++.+|++.+. ...++. .+ ..+..++..+.| +.+++.+.+..++
T Consensus 146 ~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~- 220 (324)
T 3u61_B 146 IDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS- 220 (324)
T ss_dssp GGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG-
T ss_pred ccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh-
Confidence 9999999999 88 479999999998776655433 222222 12 346778877655 5566666666554
Q ss_pred HHHHhCCCCcCHHHHHHHHHH
Q 014525 390 LALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 390 ~A~~~~~~~It~~d~~~al~~ 410 (423)
....||.+++..++..
T Consensus 221 -----~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 221 -----SKGVLDAGILSLVTND 236 (324)
T ss_dssp -----GGTCBCC---------
T ss_pred -----ccCCCCHHHHHHHhCC
Confidence 2335777777765543
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.78 E-value=3.8e-17 Score=158.98 Aligned_cols=218 Identities=20% Similarity=0.253 Sum_probs=159.0
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhh
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 244 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~ 244 (423)
....|++++|++..++.+...+..... .| .++.+++|+||||||||+||+++|+.++.++...+++.+..
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 89 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--
Confidence 446789999999988888776643211 12 34568999999999999999999999998887766654321
Q ss_pred hhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC-------CC------CCCCeE
Q 014525 245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-------FS------SDDRIK 311 (423)
Q Consensus 245 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~-------~~------~~~~v~ 311 (423)
...+..++.. ...+.|+||||++.+. +.++..++..+..... .. ....+.
T Consensus 90 ----~~~l~~~~~~--~~~~~v~~iDE~~~l~-----------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 90 ----QGDMAAILTS--LERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ----HHHHHHHHHH--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ----HHHHHHHHHH--ccCCCEEEEcchhhcC-----------HHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1122222222 2345799999999984 2344555544443210 00 012467
Q ss_pred EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 312 VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
++++++.+..+++.+++ ||...+.+++|+.+++.+|++......++.- +..+..|+..+.| +++.+.++++.+...
T Consensus 153 li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 78899999999999999 9988999999999999999998877655442 2236778888876 689999999999988
Q ss_pred HHHhCCCCcCHHHHHHHHHHHH
Q 014525 391 ALRRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 391 A~~~~~~~It~~d~~~al~~~~ 412 (423)
|..++...||.+++.+++..+.
T Consensus 230 a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHHHHHhC
Confidence 8888888999999999998763
No 60
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=2.2e-18 Score=177.35 Aligned_cols=226 Identities=18% Similarity=0.252 Sum_probs=144.9
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccC-hhHHhhhCCC---CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTH-KERFQKLGVR---PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~-~~~~~~~g~~---~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
++..+.+|++++|++..++.+..++...... +..+...|.. +++++||+||||||||++|+++|++++.+++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 3445678999999999999999988753221 1223333332 45789999999999999999999999999999999
Q ss_pred chhhhhhhhchH-H------HHHHHHHHH-----HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC
Q 014525 238 PQLVQMFIGDGA-K------LVRDAFQLA-----KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS 305 (423)
Q Consensus 238 ~~l~~~~~g~~~-~------~~~~~~~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~ 305 (423)
+++......... . .+..+|..+ ....+.||||||+|.+.... ......+..++...
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~~---- 178 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKT---- 178 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHC----
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHhc----
Confidence 876543221100 0 011122222 22567899999999986432 12234566666542
Q ss_pred CCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhc--CCCCCCCCHHHHHHhCCCCcHHHHHHH
Q 014525 306 SDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRK--MNVHPDVNFEELARSTDDFNGAQLKAV 383 (423)
Q Consensus 306 ~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~--~~~~~~~~l~~la~~~~g~s~~dl~~l 383 (423)
...+++|+++.....+. .+. |+...+.|++|+.+++.+++...+.. +.++.+ .+..|+..+.| +.+.+.++
T Consensus 179 -~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-diR~~i~~ 251 (516)
T 1sxj_A 179 -STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-DIRQVINL 251 (516)
T ss_dssp -SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-CHHHHHHH
T ss_pred -CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cHHHHHHH
Confidence 12343333333223343 344 45579999999999999999877654 334433 47888888765 45555555
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 384 CVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 384 ~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
++.++ . ....|+.+++..++...
T Consensus 252 L~~~~---~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 252 LSTIS---T--TTKTINHENINEISKAW 274 (516)
T ss_dssp HTHHH---H--HSSCCCTTHHHHHHHHH
T ss_pred HHHHH---h--cCCCCchHHHHHHHHhh
Confidence 54432 2 34568888888777644
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.77 E-value=1.1e-17 Score=165.28 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=157.7
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCC--CceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPK--GVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQL 240 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~--~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l 240 (423)
..+++++|.+..++.+...+...... ..+. +++|+||||||||++++++++.+ +.+++.++|+..
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34478999999999999987653322 2334 79999999999999999999998 568899997653
Q ss_pred hh------hh---h-------hc-hHHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc
Q 014525 241 VQ------MF---I-------GD-GAKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 302 (423)
Q Consensus 241 ~~------~~---~-------g~-~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~ 302 (423)
.. .. . +. .......+...... ..|.||+|||+|.+ +...+..|..++....
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEAD 153 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCC
Confidence 21 10 0 11 11222223333322 45789999999997 3344555555543221
Q ss_pred CCCCCCCeEEEEEcCCC---CCCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHhhcCC---CCCCCCHHHHHHhCC--
Q 014525 303 GFSSDDRIKVIAATNRA---DILDPALMRSGRLDR-KIEFPHPTEEARARILQIHSRKMN---VHPDVNFEELARSTD-- 373 (423)
Q Consensus 303 ~~~~~~~v~vI~ttn~~---~~l~~~l~~~~Rf~~-~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~l~~la~~~~-- 373 (423)
. ....++.+|++||.+ ..+++.+.+ ||.. .+.|++++.++..+++...+.... .-.+..+..++..++
T Consensus 154 ~-~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 154 K-LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp H-HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred C-CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 1 001477889998877 678888887 7765 899999999999999998876411 112223667777774
Q ss_pred ------CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 014525 374 ------DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 374 ------g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~ 412 (423)
+.+++.+.++|+.|...|..++...|+.+|+..++..+.
T Consensus 231 ~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 231 TPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 347889999999999999888888999999999988764
No 62
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=1.4e-18 Score=153.79 Aligned_cols=159 Identities=22% Similarity=0.347 Sum_probs=118.3
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 235 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v 235 (423)
+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 46789999999999999887643 235679999999999999999999986 6889999
Q ss_pred ccchhhh--hhhhchHHHHHHHHHHHH-hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 236 AGPQLVQ--MFIGDGAKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 236 ~~~~l~~--~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
++..+.. .+.+.....+..++..+. ...+.||+|||+|.+.+.+... ....++..+..++.. .++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALAR-------GELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHHT-------TSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhcc-------CCeEE
Confidence 9887762 344555566666776554 3557899999999997543211 112234455555532 45678
Q ss_pred EEEcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHH
Q 014525 313 IAATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARIL 350 (423)
Q Consensus 313 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il 350 (423)
|++||.+. .+++++.+ ||. .+.+++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888765 68999998 997 6899999999998775
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.3e-19 Score=168.24 Aligned_cols=214 Identities=7% Similarity=0.087 Sum_probs=149.8
Q ss_pred ccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEEccchhh
Q 014525 172 IGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKLAGPQLV 241 (423)
Q Consensus 172 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v~~~~l~ 241 (423)
+.|.++.+..+...+...+.. ..|.+++|+||||||||++++++++++ ...++++||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 678899999998887655443 467789999999999999999999998 3468889987643
Q ss_pred hh----------hhh------chHHHHHHHHHHH--HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC
Q 014525 242 QM----------FIG------DGAKLVRDAFQLA--KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG 303 (423)
Q Consensus 242 ~~----------~~g------~~~~~~~~~~~~a--~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~ 303 (423)
+. +.| .....+...|... ....+.||+|||+|.+. . +..|+.+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S------------EKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c------------chHHHHHHhccc-
Confidence 32 212 2344566677764 34567899999999995 1 346667776432
Q ss_pred CCCCCCeEEEEEcCCCCCC----ChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHhhcCCCC------------------
Q 014525 304 FSSDDRIKVIAATNRADIL----DPALMRSGRLD-RKIEFPHPTEEARARILQIHSRKMNVH------------------ 360 (423)
Q Consensus 304 ~~~~~~v~vI~ttn~~~~l----~~~l~~~~Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~------------------ 360 (423)
....++.||+++|..+.. ++++.+ ||. .++.|++++.++..+|++..+....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 234678999999987653 444556 786 689999999999999999888764211
Q ss_pred ------------------CCCCHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHH
Q 014525 361 ------------------PDVNFEELARS---TDDFNGAQLKAVCVEAGMLALRR---------DATEVNHEDFNEGIIQ 410 (423)
Q Consensus 361 ------------------~~~~l~~la~~---~~g~s~~dl~~l~~~A~~~A~~~---------~~~~It~~d~~~al~~ 410 (423)
.+..+..+|+. ..| ..|-.-.+|+.|+..|.++ +...||.+.+.+++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp -------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 11124455553 233 3556667899999888654 2346788877777766
Q ss_pred HH
Q 014525 411 VQ 412 (423)
Q Consensus 411 ~~ 412 (423)
+.
T Consensus 315 ~~ 316 (318)
T 3te6_A 315 AI 316 (318)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=3e-18 Score=174.15 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=142.4
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEE
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 234 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~ 234 (423)
.+..|++|+|.+..++.+...+.. ...+++||+||||||||++|+++|+.+ +.+++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 445789999999999999887643 234579999999999999999999997 778999
Q ss_pred EccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 014525 235 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 314 (423)
Q Consensus 235 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ 314 (423)
++++ ..|.|..+..++.+|..+....++||||| + ..+.++.|..++ ..+.+.+|+
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L-------~~g~v~vI~ 296 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGELQCIG 296 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSCEEEE
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh-------cCCCEEEEe
Confidence 9987 56777777778889999988888999999 1 112333333332 245789999
Q ss_pred EcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCC----C-CCCCHHHHHHhCC-----CCcHHH
Q 014525 315 ATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV----H-PDVNFEELARSTD-----DFNGAQ 379 (423)
Q Consensus 315 ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~----~-~~~~l~~la~~~~-----g~s~~d 379 (423)
+||.+. .+++++.+ ||. .+.|++|+.+++..|++.+...+.. . .+..+..++..+. .+.+..
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ 373 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcH
Confidence 999887 68999999 996 5999999999999999988766322 1 1122444554433 344567
Q ss_pred HHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHH
Q 014525 380 LKAVCVEAGMLALRRD-ATEVNHEDFNEGIIQVQA 413 (423)
Q Consensus 380 l~~l~~~A~~~A~~~~-~~~It~~d~~~al~~~~~ 413 (423)
...++..|+..+..+. ........+...+..+..
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~ 408 (468)
T 3pxg_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRK 408 (468)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence 7788888876654443 334455666666666553
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=1.7e-17 Score=178.65 Aligned_cols=222 Identities=24% Similarity=0.315 Sum_probs=161.2
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 235 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v 235 (423)
+..|++++|.+..++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 35789999999999999887642 245689999999999999999999987 5678888
Q ss_pred ccchhh--hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 014525 236 AGPQLV--QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVI 313 (423)
Q Consensus 236 ~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI 313 (423)
+++.+. ..+.|..+..++.++..+....++||||||+|.+.+.+... .+..+..+.+. ..-..+++.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~-------~~l~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIK-------PLLSSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHS-------SCSSSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHH-------HHHhCCCeEEE
Confidence 887776 35778888888999999888788999999999997654221 11222222222 22334678899
Q ss_pred EEcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcC----CCC-CCCCHHHHHHhC-----CCCcHH
Q 014525 314 AATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKM----NVH-PDVNFEELARST-----DDFNGA 378 (423)
Q Consensus 314 ~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~l~~la~~~-----~g~s~~ 378 (423)
++||.++ .+++++.+ ||. .+.|+.|+.+++.+|++.+...+ .+. .+..+..++..+ ..+.+.
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTH
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCch
Confidence 9998643 47889998 997 79999999999999998776542 111 111244455443 335567
Q ss_pred HHHHHHHHHHHHHHH----hCCCCcCHHHHHHHHHHHH
Q 014525 379 QLKAVCVEAGMLALR----RDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 379 dl~~l~~~A~~~A~~----~~~~~It~~d~~~al~~~~ 412 (423)
.+..++.+|+..+.. .....|+.+|+..++..+.
T Consensus 397 ~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 888899888866654 2356799999999987753
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.75 E-value=3e-18 Score=164.54 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=140.2
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh--
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF-- 244 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~-- 244 (423)
++++|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 358899999999999876532 235689999999999999999999976 5789999998764322
Q ss_pred ---hhchH----HH---HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC------CCCC
Q 014525 245 ---IGDGA----KL---VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF------SSDD 308 (423)
Q Consensus 245 ---~g~~~----~~---~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~------~~~~ 308 (423)
+|... +. ....|..+ .+++||||||+.+ ....|..|+.+++...-. ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 22110 00 11223333 3479999999998 346778888888764311 1124
Q ss_pred CeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCC--HHHHHHHHHHHhhcC----CCC-CCC---CHHHHHH
Q 014525 309 RIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPT--EEARARILQIHSRKM----NVH-PDV---NFEELAR 370 (423)
Q Consensus 309 ~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~-~~~---~l~~la~ 370 (423)
++.||+|||.+ ..+++.|.. ||. ..+.+|++. .++...++++++..+ +.. ..+ .+..|..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 68899999975 346777877 774 457788776 456666777665432 211 122 2566777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 371 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 371 ~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
+.+..+.+++.+++..|+..+ ....|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 887788999999999988655 34556666654
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1.1e-16 Score=154.23 Aligned_cols=203 Identities=16% Similarity=0.182 Sum_probs=145.6
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccc
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGP 238 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~ 238 (423)
..+..|++++|++..++.+...+.. + ..+ +++|+||||||||++|+++++.+ +.+++.++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 3456899999999999999988743 1 223 49999999999999999999986 3457888876
Q ss_pred hhhhhhhhchHHHHHHHHHHHH-------hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 239 QLVQMFIGDGAKLVRDAFQLAK-------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~a~-------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
+... ...++.++.... ...+.||+|||+|.+. ...++.|..+++.. ..++.
T Consensus 82 ~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~-----~~~~~ 139 (323)
T 1sxj_B 82 DDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMELY-----SNSTR 139 (323)
T ss_dssp SCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHHT-----TTTEE
T ss_pred cccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHHHHHHHHHHhcc-----CCCce
Confidence 5321 223334444333 2347899999999973 34456667777652 34677
Q ss_pred EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 312 VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
+|++||.+..+.+++.+ |+. .+.|++|+.++..+++...+...+.. .+..+..++..+.| +++.+.+++..+...
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 88888988899999998 774 89999999999999999887654433 12236677887765 566666766665532
Q ss_pred HHHhCCCCcCHHHHHHHHHH
Q 014525 391 ALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 391 A~~~~~~~It~~d~~~al~~ 410 (423)
. ..||.+++.+++..
T Consensus 216 ---~--~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 216 ---H--GLVNADNVFKIVDS 230 (323)
T ss_dssp ---H--SSBCHHHHHHHHTS
T ss_pred ---C--CCcCHHHHHHHHCC
Confidence 1 45888888776643
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.73 E-value=2.4e-17 Score=158.45 Aligned_cols=206 Identities=19% Similarity=0.207 Sum_probs=139.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEcc
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAG 237 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~ 237 (423)
+..+..|++++|++..++.+...+.. + ...++||+||||||||++|+++++.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34557899999999999988876632 1 22349999999999999999999986 346788888
Q ss_pred chhhhhhhhchHHHHHHHHHHH--HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLA--KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAA 315 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a--~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~t 315 (423)
+...+. ......+....... ....+.||+|||+|.+. ...++.|..++ +. ...++.+|++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~l---e~--~~~~~~~i~~ 138 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTM---EM--YSKSCRFILS 138 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGT---SS--SSSSEEEEEE
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHH---Hh--cCCCCeEEEE
Confidence 764221 11111121111110 12447899999999983 23344443333 22 2357888999
Q ss_pred cCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 014525 316 TNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 394 (423)
Q Consensus 316 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~ 394 (423)
||.+..+.+++.+ |+. .+.|++|+.+++..++...+...+.. .+..+..|+..+.| +.+.+.++++.+...
T Consensus 139 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~---- 210 (319)
T 2chq_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI---- 210 (319)
T ss_dssp ESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS----
T ss_pred eCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc----
Confidence 9999999999998 885 89999999999999999888766554 22235667766554 667777777665432
Q ss_pred CCCCcCHHHHHHHH
Q 014525 395 DATEVNHEDFNEGI 408 (423)
Q Consensus 395 ~~~~It~~d~~~al 408 (423)
...||.+++.+++
T Consensus 211 -~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 -GEVVDADTIYQIT 223 (319)
T ss_dssp -SSCBCHHHHHHHT
T ss_pred -CCCCCHHHHHHHH
Confidence 3457777766543
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=1.8e-16 Score=152.95 Aligned_cols=204 Identities=20% Similarity=0.257 Sum_probs=141.0
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC-----CcEEEEccc
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN-----ATFLKLAGP 238 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~-----~~~i~v~~~ 238 (423)
..+..|++++|++..++.+...+.. | ...++||+||||||||++|+++++.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 4567899999999999999887643 1 223599999999999999999999863 347788876
Q ss_pred hhhhhhhhchHHHHHHHHHH--HHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 239 QLVQMFIGDGAKLVRDAFQL--AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 239 ~l~~~~~g~~~~~~~~~~~~--a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
+..+. ......+...... .....+.||+|||+|.+. ...++.|..+++.. ..++.+|+++
T Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~-----~~~~~~i~~~ 147 (327)
T 1iqp_A 86 DERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF-----SSNVRFILSC 147 (327)
T ss_dssp CHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT-----TTTEEEEEEE
T ss_pred ccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc-----CCCCeEEEEe
Confidence 54221 1111111111110 011457899999999973 35567777777652 3467788899
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 014525 317 NRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 395 (423)
Q Consensus 317 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~ 395 (423)
|.+..+.+++.+ |+. .+.|++|+.++...++...+...++. ++..+..++..+.| +++.+.++++.+...
T Consensus 148 ~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~----- 218 (327)
T 1iqp_A 148 NYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL----- 218 (327)
T ss_dssp SCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-----
T ss_pred CCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHhc-----
Confidence 988899999998 885 88999999999999999888765543 22236677777755 677777777665532
Q ss_pred CCCcCHHHHHHH
Q 014525 396 ATEVNHEDFNEG 407 (423)
Q Consensus 396 ~~~It~~d~~~a 407 (423)
...||.+++..+
T Consensus 219 ~~~i~~~~v~~~ 230 (327)
T 1iqp_A 219 DKKITDENVFMV 230 (327)
T ss_dssp CSEECHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 224555554443
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=2.4e-17 Score=145.47 Aligned_cols=152 Identities=22% Similarity=0.384 Sum_probs=112.8
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 235 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v 235 (423)
+..|++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 35789999999999999887642 235679999999999999999999987 7788889
Q ss_pred ccchhhhh--hhhchHHHHHHHHHHHHhC-CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 236 AGPQLVQM--FIGDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 236 ~~~~l~~~--~~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
++..+... +.+.....+..++..+... .+.||+|||+|.+.+.+.... ...++.+.+..+++. .++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~-------~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLAR-------GELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHT-------TCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhc-------CCeeE
Confidence 88876532 3445555566677666554 678999999999975543111 112344555555543 45778
Q ss_pred EEEcCCCC-----CCChhhhcCCCcceEEEcCCCC
Q 014525 313 IAATNRAD-----ILDPALMRSGRLDRKIEFPHPT 342 (423)
Q Consensus 313 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~ 342 (423)
|+++|.+. .+++++.+ ||. .+.+++|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99998765 68999999 997 58999885
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.72 E-value=9e-18 Score=170.88 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=135.8
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccch-hhhhhhh
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQ-LVQMFIG 246 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~-l~~~~~g 246 (423)
..++|++..+..+...+. .+.++||+||||||||++|+++|+.++ .+|..+++.- ..+..+|
T Consensus 22 ~~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 458899999988776653 235899999999999999999999884 4666665531 1122222
Q ss_pred ch--HHH-HHHHHHHHHhC---CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC----C-CCCCeEEEEE
Q 014525 247 DG--AKL-VRDAFQLAKEK---SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF----S-SDDRIKVIAA 315 (423)
Q Consensus 247 ~~--~~~-~~~~~~~a~~~---~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~----~-~~~~v~vI~t 315 (423)
.. ... -...+..+... .++|||||||+.+ ++..+..|+++++..... . .....++|+|
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 11 000 01122212121 3579999999885 567888888888753211 0 1112245777
Q ss_pred cCCCCC---CChhhhcCCCcceEEEcCCCCH-HHHHHHHHHHhhcC-------------------------CCCCCCCHH
Q 014525 316 TNRADI---LDPALMRSGRLDRKIEFPHPTE-EARARILQIHSRKM-------------------------NVHPDVNFE 366 (423)
Q Consensus 316 tn~~~~---l~~~l~~~~Rf~~~i~~~~p~~-~~r~~Il~~~~~~~-------------------------~~~~~~~l~ 366 (423)
||+... +.+++++ ||...+.+|+|+. +++..|++.+.... .++.+ -..
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e 232 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFE 232 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHH
Confidence 775322 4568998 9999999999987 77888887654211 11111 123
Q ss_pred HHHHhC---------CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 014525 367 ELARST---------DDFNGAQLKAVCVEAGMLALRRDATEVNHEDFN 405 (423)
Q Consensus 367 ~la~~~---------~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 405 (423)
.++... .|.|++.+..+++.|...|..+++..|+.+|+.
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 333322 478999999999999999999999999999987
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=5.1e-17 Score=174.79 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=140.1
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEE
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLK 234 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~ 234 (423)
....+++++|.+..++.+...+.. ..++++||+||||||||++|+++|+.+ +.+++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 445789999999999999987643 244679999999999999999999997 778888
Q ss_pred EccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 014525 235 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIA 314 (423)
Q Consensus 235 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ 314 (423)
+++ ...|.|..+..++.+|..+....++||||| + ..+.++.+...+ ..+.+.+|+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l-------~~~~v~~I~ 296 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGELQCIG 296 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHH-------hcCCEEEEe
Confidence 887 455778777888899999998889999999 1 112233333222 246789999
Q ss_pred EcCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCC-----HHHHHHh-----CCCCcHHH
Q 014525 315 ATNRAD-----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVN-----FEELARS-----TDDFNGAQ 379 (423)
Q Consensus 315 ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-----l~~la~~-----~~g~s~~d 379 (423)
+||... .+++++.+ || ..+.|++|+.+++..|++.+...+.....+. +..++.. ..++.+..
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999888 69999999 99 5699999999999999998776643222221 3334332 34566778
Q ss_pred HHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHH
Q 014525 380 LKAVCVEAGMLALRRDA-TEVNHEDFNEGIIQV 411 (423)
Q Consensus 380 l~~l~~~A~~~A~~~~~-~~It~~d~~~al~~~ 411 (423)
...++..|+..+..+.. ..-...++...+..+
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~ 406 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (758)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcchhhHHHHHHHH
Confidence 88888888876654432 222334444444433
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.72 E-value=1.8e-16 Score=156.01 Aligned_cols=203 Identities=18% Similarity=0.231 Sum_probs=144.1
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc------------
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT------------ 231 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~------------ 231 (423)
..+..|++++|++..++.+...+... ..++.+||+||+|||||++|+++++.+++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34568999999999999999887421 234568999999999999999999988542
Q ss_pred ------------EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHH
Q 014525 232 ------------FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295 (423)
Q Consensus 232 ------------~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 295 (423)
++.++.+.. .....++.++..+.. ..+.||+|||+|.+. ...++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll 140 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALL 140 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHH
T ss_pred HHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHH
Confidence 222222110 011123445555442 346899999999973 34556666
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCC-CCCHHHHHHhCCC
Q 014525 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHP-DVNFEELARSTDD 374 (423)
Q Consensus 296 ~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g 374 (423)
.+++. ...++++|++|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+...++.- +..+..++..+.|
T Consensus 141 ~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 141 KTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 66653 33578888888888889999998 77 7899999999999999998887655432 2236678888865
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 375 FNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 375 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
+++.+.+++..+...+ ...||.+++.+++
T Consensus 213 -~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 213 -SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp -CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 7888989888876432 3568888776654
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=9.5e-17 Score=174.66 Aligned_cols=203 Identities=21% Similarity=0.288 Sum_probs=135.8
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----------CCcEEEE
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----------NATFLKL 235 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----------~~~~i~v 235 (423)
+..|++++|.+..+..+...+.. ..+++++|+||||||||++|+++|+.+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 46899999999999999887632 234689999999999999999999987 7899999
Q ss_pred ccchhh--hhhhhchHHHHHHHHHHHHhC-CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q 014525 236 AGPQLV--QMFIGDGAKLVRDAFQLAKEK-SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKV 312 (423)
Q Consensus 236 ~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~v 312 (423)
+++.+. ..+.|..+..++.++..+... .|.||||||+|.+.+..... +..+..+.+..++.. +++.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~-------~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALAR-------GELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT-------TCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhC-------CCeEE
Confidence 999886 457788888888899888775 68999999999997554221 223445566666643 45678
Q ss_pred EEEcCCCC----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCC----CC-CCCCHHHHHHh-----CCCCcHH
Q 014525 313 IAATNRAD----ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMN----VH-PDVNFEELARS-----TDDFNGA 378 (423)
Q Consensus 313 I~ttn~~~----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~~l~~la~~-----~~g~s~~ 378 (423)
|++||.+. .+++++.+ ||+. +.|++|+.+++.+|++.++..+. +. .+..+..++.. +..+.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 88888664 47899999 9975 99999999999999987765431 11 11224444443 3456677
Q ss_pred HHHHHHHHHHHHHHHh
Q 014525 379 QLKAVCVEAGMLALRR 394 (423)
Q Consensus 379 dl~~l~~~A~~~A~~~ 394 (423)
....++.+|+..+..+
T Consensus 380 kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888888766543
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.9e-17 Score=172.68 Aligned_cols=226 Identities=21% Similarity=0.158 Sum_probs=145.9
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc----cchhhhhhh
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLA----GPQLVQMFI 245 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~----~~~l~~~~~ 245 (423)
..|+|++.+++.+.-.+..... .......+....++||+||||||||++|+++|+.++..++... +..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~--~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVP--KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCC--EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCCc--ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 4688888877666443321100 0000011123337999999999999999999999876655432 222221111
Q ss_pred hch-HHH---HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcC--------CCCCCCeEEE
Q 014525 246 GDG-AKL---VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--------FSSDDRIKVI 313 (423)
Q Consensus 246 g~~-~~~---~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~--------~~~~~~v~vI 313 (423)
... .+. ....+..+ ..+|+||||||.+ ++..+..|+++++...- .....++.||
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 100 000 00111122 3479999999997 44677888888875321 1113478899
Q ss_pred EEcCCCC-------------CCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHhhcCCC--------------------
Q 014525 314 AATNRAD-------------ILDPALMRSGRLDR-KIEFPHPTEEARARILQIHSRKMNV-------------------- 359 (423)
Q Consensus 314 ~ttn~~~-------------~l~~~l~~~~Rf~~-~i~~~~p~~~~r~~Il~~~~~~~~~-------------------- 359 (423)
+|||++. .+++++++ |||. .+..+.|+.+ ...|+++.+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999876 89999999 9985 5556677767 77777776653221
Q ss_pred ------CCCCCHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 014525 360 ------HPDVNFEELARS--------------TDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414 (423)
Q Consensus 360 ------~~~~~l~~la~~--------------~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~ 414 (423)
-++.....|... ..+.|++.+.++++.|...|..+.+..|+.+|+.+|+.-+..+
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 011223344443 3578899999999999999999999999999999999887654
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.5e-15 Score=148.49 Aligned_cols=194 Identities=14% Similarity=0.211 Sum_probs=133.4
Q ss_pred ccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-----------
Q 014525 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA----------- 230 (423)
Q Consensus 162 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~----------- 230 (423)
++..+.+|++++|++.+++.+...+. .. | ..+. ++|+||+|||||++++++++.+..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~---~~-------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD---QP-------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT---CT-------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh---hC-------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 34456789999999999988877651 11 1 2233 999999999999999999996511
Q ss_pred ------------------cEEEEccchhhhhhhhchHHHHHHHHHHHH--------------hCCCeEEEECCchhhhcc
Q 014525 231 ------------------TFLKLAGPQLVQMFIGDGAKLVRDAFQLAK--------------EKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 231 ------------------~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~--------------~~~~~vl~iDEid~l~~~ 278 (423)
.++.++.+... ......++..+..+. ...|.||+|||++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L--- 146 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL--- 146 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---
Confidence 12333322210 000012333333321 235679999999996
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCC
Q 014525 279 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMN 358 (423)
Q Consensus 279 r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~ 358 (423)
+...++.+..+++.. ..++.+|++|+.+..+.+++.+ |+ ..+.|++|+.+++..+++..+...+
T Consensus 147 --------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 147 --------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp --------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 445677777777763 2357788888989999999998 88 8899999999999999998876555
Q ss_pred CC-C-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 359 VH-P-DVNFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 359 ~~-~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
+. + +..+..++..+.| +.+++.++++.+...+
T Consensus 211 ~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp CEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 43 2 3347788887765 6788888888776543
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3.6e-15 Score=145.30 Aligned_cols=208 Identities=21% Similarity=0.261 Sum_probs=138.7
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC-----cEEEEcc
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA-----TFLKLAG 237 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~-----~~i~v~~ 237 (423)
+..+..|++++|++.+++.+...+.. | ..| +++|+||||||||++|+++|+.+.. .++.+++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 34567899999999999998887742 1 123 4999999999999999999998732 3666666
Q ss_pred chhhhhhhhchHHHHHHHHHHHH------hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeE
Q 014525 238 PQLVQMFIGDGAKLVRDAFQLAK------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIK 311 (423)
Q Consensus 238 ~~l~~~~~g~~~~~~~~~~~~a~------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~ 311 (423)
++..+ ...++..+.... ...+.|++|||+|.+. ...++.|..+++.. ..++.
T Consensus 85 ~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~-----~~~~~ 142 (340)
T 1sxj_C 85 SDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY-----TKNTR 142 (340)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT-----TTTEE
T ss_pred ccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC-----CCCeE
Confidence 54211 122222222222 1236899999999983 34566777777653 24567
Q ss_pred EEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014525 312 VIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH-PDVNFEELARSTDDFNGAQLKAVCVEAGML 390 (423)
Q Consensus 312 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~~A~~~ 390 (423)
+|+++|.+..+.+++.+ |+. .+.|++++.++..+++...+...++. .+.....++..+.| ..+.+.++++.+...
T Consensus 143 ~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~ 218 (340)
T 1sxj_C 143 FCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKAT 218 (340)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTT
T ss_pred EEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 78888999999999998 874 78999999999999998887543332 12235566666654 455555555544332
Q ss_pred HHHhCCCCcCHHHHHHHHH
Q 014525 391 ALRRDATEVNHEDFNEGII 409 (423)
Q Consensus 391 A~~~~~~~It~~d~~~al~ 409 (423)
+...+...||.+++.+++.
T Consensus 219 ~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 219 LDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp TCSSSCCCBCHHHHHHHTT
T ss_pred cCCcccccccHHHHHHHhC
Confidence 2111223688877765543
No 78
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.63 E-value=5.6e-16 Score=132.19 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=94.3
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhc
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGD 247 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~ 247 (423)
+++|.+.+++.+.+.+.... ..+.++||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 57899999999999886432 234679999999999999999999987 67899 999876543
Q ss_pred hHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-------C
Q 014525 248 GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-------D 320 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~-------~ 320 (423)
......+..+ ..++|||||||.+ +...|..++.++.. ...++.+|+|||.+ .
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSCHHHHHHHS
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcCHHHHHHcC
Confidence 1122344444 3479999999997 45677777777732 23467789999864 2
Q ss_pred CCChhhhcCCCcce-EEEcCCC
Q 014525 321 ILDPALMRSGRLDR-KIEFPHP 341 (423)
Q Consensus 321 ~l~~~l~~~~Rf~~-~i~~~~p 341 (423)
.+.+.+.. |+.. .|.+|++
T Consensus 125 ~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 125 HIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp CCCHHHHH--HHHHHEEECCCC
T ss_pred CCCHHHHH--HhcCCEEeCCCC
Confidence 46666665 5433 6777765
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.63 E-value=3.1e-16 Score=133.53 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=95.6
Q ss_pred cccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHH
Q 014525 171 DIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAK 250 (423)
Q Consensus 171 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~ 250 (423)
+++|.+.+++.+.+.+..... .+.++||+||||||||++|+++++... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 478999999999998864322 346799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-CC----CChh
Q 014525 251 LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA-DI----LDPA 325 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~-~~----l~~~ 325 (423)
....+..+ .+++|||||+|.+ ..+.+..++++++... ..++.+|+|||.+ .. +++.
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhC---CCCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHH
Confidence 23344443 3579999999997 4567788888887753 3467788888854 33 3445
Q ss_pred hhcCCCc-ceEEEcCCC
Q 014525 326 LMRSGRL-DRKIEFPHP 341 (423)
Q Consensus 326 l~~~~Rf-~~~i~~~~p 341 (423)
+.. |+ ...|.+|++
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 554 54 346778765
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.62 E-value=4.1e-15 Score=155.80 Aligned_cols=222 Identities=21% Similarity=0.291 Sum_probs=145.7
Q ss_pred cccCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc---EEEEcc
Q 014525 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT---FLKLAG 237 (423)
Q Consensus 161 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~---~i~v~~ 237 (423)
....++..|++++|++.+++.+...+. .+.+++|+||||||||++|+++|..+... .+.+.+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred cccccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 344566889999999999988887763 34589999999999999999999987422 222211
Q ss_pred chhh--------------hhhh------------------------------------------hchHHHHHHHHH----
Q 014525 238 PQLV--------------QMFI------------------------------------------GDGAKLVRDAFQ---- 257 (423)
Q Consensus 238 ~~l~--------------~~~~------------------------------------------g~~~~~~~~~~~---- 257 (423)
.... .... .........+|.
T Consensus 97 ~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~ 176 (604)
T 3k1j_A 97 NPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH 176 (604)
T ss_dssp CTTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC
T ss_pred CcccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe
Confidence 1100 0000 000000011111
Q ss_pred -------------------HHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC--------------
Q 014525 258 -------------------LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-------------- 304 (423)
Q Consensus 258 -------------------~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~-------------- 304 (423)
.+....+++|||||++.+ ++..+..|+++|+...-.
T Consensus 177 ~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 177 DPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp CCC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred chhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 112234679999999997 467888999998753311
Q ss_pred --CCCCCeEEEEEcCCC--CCCChhhhcCCCcc---eEEEcCCC---CHHHHHHHHHHHhhcCC---CCCCC---CHHHH
Q 014525 305 --SSDDRIKVIAATNRA--DILDPALMRSGRLD---RKIEFPHP---TEEARARILQIHSRKMN---VHPDV---NFEEL 368 (423)
Q Consensus 305 --~~~~~v~vI~ttn~~--~~l~~~l~~~~Rf~---~~i~~~~p---~~~~r~~Il~~~~~~~~---~~~~~---~l~~l 368 (423)
....++.||+|||+. ..++++|++ ||. ..+.|+.. +.+....+++.+..... ....+ .+..|
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 112378899999976 679999999 986 56676532 34556666654443221 11122 24555
Q ss_pred HHhC---CCC------cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 014525 369 ARST---DDF------NGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 410 (423)
Q Consensus 369 a~~~---~g~------s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~ 410 (423)
.... .|. +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 5433 442 68999999999999998889999999999999964
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=8.4e-14 Score=138.54 Aligned_cols=230 Identities=11% Similarity=0.113 Sum_probs=149.3
Q ss_pred CcccccCchHHHHHHHHHH-HccccChhHHhhhCCCCCCCceE--EcCCCCChhHHHHHHHHHh---------CCcEEEE
Q 014525 168 DYNDIGGLEKQIQELVEAI-VLPMTHKERFQKLGVRPPKGVLL--YGPPGTGKTLMARACAAQT---------NATFLKL 235 (423)
Q Consensus 168 ~~~~i~G~~~~~~~l~~~i-~~~l~~~~~~~~~g~~~~~~vLl--~Gp~GtGKT~la~ala~~l---------~~~~i~v 235 (423)
....++|.+..++.+...+ ......+ + ..+..++| +||||||||++++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~------~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA------G-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS------C-BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC------C-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477999999999999877 4322110 0 13457899 9999999999999999876 4567888
Q ss_pred ccchh------hhhh---h-------hch-HHHHHHHHHHHH-hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHH
Q 014525 236 AGPQL------VQMF---I-------GDG-AKLVRDAFQLAK-EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLEL 297 (423)
Q Consensus 236 ~~~~l------~~~~---~-------g~~-~~~~~~~~~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 297 (423)
+|... .... . +.. ......+..... ...|.||+|||+|.+...+. .+.+....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHHH
Confidence 86432 1111 1 111 122222333322 34578999999999863210 123444444445
Q ss_pred HHhhcCCCCCCCeEEEEEcCCCC---CCC---hhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCC---CCCCHHHH
Q 014525 298 LNQLDGFSSDDRIKVIAATNRAD---ILD---PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVH---PDVNFEEL 368 (423)
Q Consensus 298 l~~~~~~~~~~~v~vI~ttn~~~---~l~---~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~---~~~~l~~l 368 (423)
+.....-....++.+|++++.++ .++ +.+.+ ++...+.+++++.++..+++...+...... .+..+..+
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 54432000025788888887554 233 55666 666669999999999999998776532211 12235667
Q ss_pred HHhCC------CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 014525 369 ARSTD------DFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 412 (423)
Q Consensus 369 a~~~~------g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~ 412 (423)
+..+. | +++.+..++..|...|..++...|+.+++..++....
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 77777 5 6888999999998888888888899999998887653
No 82
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.52 E-value=2.3e-13 Score=134.89 Aligned_cols=210 Identities=21% Similarity=0.248 Sum_probs=145.3
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEccchhhhh--
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLVQM-- 243 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~~l~~~-- 243 (423)
+..++|.+..++.+.+.+.... ....+++|+|++|||||++|++++.... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 5678999999999888775421 2345799999999999999999998763 79999999876443
Q ss_pred ---hhhchHHH-------HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCC--CC----C
Q 014525 244 ---FIGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SS----D 307 (423)
Q Consensus 244 ---~~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~--~~----~ 307 (423)
.+|...+. ....|+.+ ..++||||||+.+ +.+.|..|+++++...-. .. .
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 22221110 01223333 3479999999997 568899999999864311 11 2
Q ss_pred CCeEEEEEcCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHhhc----CCCC----CCCCHHHHH
Q 014525 308 DRIKVIAATNRA-------DILDPALMRSGRLD-RKIEFPHPTE--EARARILQIHSRK----MNVH----PDVNFEELA 369 (423)
Q Consensus 308 ~~v~vI~ttn~~-------~~l~~~l~~~~Rf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~----~~~~l~~la 369 (423)
.++.||+|||.. ..+.+.|.. |+. ..+.+|++.. ++...++.+++.. ++.. ++..+..|.
T Consensus 271 ~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 271 VNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred ccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 368899999953 345666665 543 4677777654 6666677766643 2222 122366677
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 014525 370 RSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408 (423)
Q Consensus 370 ~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al 408 (423)
.+.+..+.++|++++..|+..+ ....|+.+|+...+
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 8888888999999999998765 45689999987544
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.48 E-value=8.3e-13 Score=128.26 Aligned_cols=173 Identities=17% Similarity=0.197 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCc-----------------------
Q 014525 175 LEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNAT----------------------- 231 (423)
Q Consensus 175 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~----------------------- 231 (423)
++...+.+...+.. | +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45666666665532 1 345579999999999999999999987532
Q ss_pred -EEEEccchhhhhhhhchHHHHHHHHHHHHh----CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC
Q 014525 232 -FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE----KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS 306 (423)
Q Consensus 232 -~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~ 306 (423)
++.++..+- + .......++.+.+.+.. ..+.|++|||+|.+. .+.++.|+..+++ +
T Consensus 75 d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe-----p 135 (334)
T 1a5t_A 75 DYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE-----P 135 (334)
T ss_dssp TEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS-----C
T ss_pred CEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC-----C
Confidence 233332100 0 01123445666666543 346899999999983 3445555555542 3
Q ss_pred CCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHH
Q 014525 307 DDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVE 386 (423)
Q Consensus 307 ~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~ 386 (423)
..++++|++||.++.+.+++++ |+ ..+.|++|+.++..+++.... .++ +..+..++..+.| +++.+.+++..
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 4578888888989999999998 87 579999999999999888765 222 2235667777665 55555555443
No 84
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.43 E-value=3.9e-13 Score=101.79 Aligned_cols=77 Identities=45% Similarity=0.717 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 339 PHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 339 ~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
|+|+.++|.+||+.+++++.+..++++..|+..|.||||+||.++|++|++.|++++...|+++||..|++++..++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 78999999999999999999888999999999999999999999999999999999999999999999999987543
No 85
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.41 E-value=2e-12 Score=127.14 Aligned_cols=195 Identities=24% Similarity=0.299 Sum_probs=133.1
Q ss_pred ccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccchhhhh----
Q 014525 170 NDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQM---- 243 (423)
Q Consensus 170 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~l~~~---- 243 (423)
..++|....+..+...+..... ....++++|++||||+++|++++...+. +|+.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 4688999988888876643221 2346999999999999999999998753 3999999865332
Q ss_pred -hhhchHHH-------HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCC--C----CCC
Q 014525 244 -FIGDGAKL-------VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS--S----DDR 309 (423)
Q Consensus 244 -~~g~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~--~----~~~ 309 (423)
.+|...+. ....|+.+ ..++||||||+.+ +...|..|+++++...-.. + ..+
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred HhcCccccccCCcccccCChHhhc---CCCeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 22221110 01233333 3479999999998 5688999999998643221 1 126
Q ss_pred eEEEEEcCCC-------CCCChhhhcCCCcce-EEEcCCCCH--HHHHHHHHHHhhcC----CCC-CCC---CHHHHHHh
Q 014525 310 IKVIAATNRA-------DILDPALMRSGRLDR-KIEFPHPTE--EARARILQIHSRKM----NVH-PDV---NFEELARS 371 (423)
Q Consensus 310 v~vI~ttn~~-------~~l~~~l~~~~Rf~~-~i~~~~p~~--~~r~~Il~~~~~~~----~~~-~~~---~l~~la~~ 371 (423)
+.+|++||.. ..+.+.|.. |+.. .|.+|++.. ++...++.+++..+ +.. ..+ .+..|..+
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 7899999853 345566665 5544 578888876 67777777766442 221 112 26677788
Q ss_pred CCCCcHHHHHHHHHHHHHHH
Q 014525 372 TDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 372 ~~g~s~~dl~~l~~~A~~~A 391 (423)
.|..+.+++++++..|+..+
T Consensus 342 ~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 88889999999999988654
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=103.33 Aligned_cols=78 Identities=45% Similarity=0.707 Sum_probs=73.7
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 338 FPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 338 ~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
-.+|+.++|.+||+.+++++.+..++|+..||..|.||||+||.++|++|++.|+++....|+++||..|+.++.+++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~ 85 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 85 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence 468999999999999999999888999999999999999999999999999999999999999999999999997653
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.8e-12 Score=124.04 Aligned_cols=142 Identities=11% Similarity=0.141 Sum_probs=103.7
Q ss_pred CchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh------CCcEEEEccchhhhhhhhc
Q 014525 174 GLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT------NATFLKLAGPQLVQMFIGD 247 (423)
Q Consensus 174 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l------~~~~i~v~~~~l~~~~~g~ 247 (423)
|++++++.+...+... . +.++|||||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 6777888888877432 1 3479999999999999999999864 346777775420 12
Q ss_pred hHHHHHHHHHHHHhCC----CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q 014525 248 GAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~----~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~ 323 (423)
+...++.+.+.+...+ +.|++|||+|.+. ...++.|+..+++ +..++++|++|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 2344566777765433 4799999999983 4556677776664 345677888888889999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHh
Q 014525 324 PALMRSGRLDRKIEFPHPTEEARARILQIHS 354 (423)
Q Consensus 324 ~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 354 (423)
|++++ | ++.|++|+.++....+...+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 88999999999999888776
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.36 E-value=6.2e-13 Score=150.49 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=107.4
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccC----------hhHHhh------hCCC----------CCCC--ceEEcCCCCC
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTH----------KERFQK------LGVR----------PPKG--VLLYGPPGTG 216 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~----------~~~~~~------~g~~----------~~~~--vLl~Gp~GtG 216 (423)
+.+.|.+++|.+..++.+.+.+..++.+ ++.|.. .|+. +|++ +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3478999999999999999999998854 556665 3333 4445 9999999999
Q ss_pred hhHHHHHHHHHh---CCcEEEEccchhh------------hhhhhc----hHHHHHHHHHHHHhCCCeEEEECCchhhhc
Q 014525 217 KTLMARACAAQT---NATFLKLAGPQLV------------QMFIGD----GAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 217 KT~la~ala~~l---~~~~i~v~~~~l~------------~~~~g~----~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
||+||++++.+. +.+.+.|+..+.. ++|+++ +++.++.++..++...|++||+|+++.|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999876 5666666665533 456666 789999999999999999999999999998
Q ss_pred cCCC---CCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q 014525 278 KRFD---SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 (423)
Q Consensus 278 ~r~~---~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~ 318 (423)
.+.. .......-..+.+.++|..+++.....+++|| +||+
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 8531 11111123344588888888775555677777 5564
No 89
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.34 E-value=1.4e-12 Score=100.02 Aligned_cols=83 Identities=27% Similarity=0.490 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhhhcc
Q 014525 341 PTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLN 420 (423)
Q Consensus 341 p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~~~~~~ 420 (423)
.+.++|.+||+.+++++++..++++..|+..|.||||+||.++|++|++.|+++....|+++||..|+.++.++....+.
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~~~l~ 80 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHE 80 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCchHHHH
Confidence 36789999999999999988899999999999999999999999999999999999999999999999999987777778
Q ss_pred ccC
Q 014525 421 YYA 423 (423)
Q Consensus 421 ~~~ 423 (423)
+|+
T Consensus 81 ~y~ 83 (83)
T 3aji_B 81 FYK 83 (83)
T ss_dssp ---
T ss_pred hcC
Confidence 874
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=3.3e-12 Score=112.55 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=81.7
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLV 241 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~ 241 (423)
..+|+++++.+...+.+.+.+... ...+...++.+++|+||||||||+|++++++.+ +..++.+++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVF------VHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHH------HHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHH------HHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 467888887544444444433321 222233456789999999999999999999987 5677778887776
Q ss_pred hhhhhchHHH-HHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 242 QMFIGDGAKL-VRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 242 ~~~~g~~~~~-~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
..+....... ...+.... ..|.+|+|||++... .++..+..+.++++.... .+..+|.|||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~ 143 (180)
T 3ec2_A 80 FRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRYN----NLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCC
T ss_pred HHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHHH----cCCCEEEEcCCC
Confidence 5543221110 01122222 256899999998542 245566677777765421 234577777754
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.28 E-value=3.2e-11 Score=142.09 Aligned_cols=173 Identities=16% Similarity=0.301 Sum_probs=112.2
Q ss_pred CCCCceEEcCCCCChhHHHHHHHH-HhCCcEEEEccchhhhhhhhchHHHHHHHHHHH----H-----------hCCCeE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAA-QTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA----K-----------EKSPCI 266 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~-~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a----~-----------~~~~~v 266 (423)
.++++||+||||||||++|+.+.. ..+..++.++++...+ ...+...++.. + ...+.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 347899999999999999955544 4467788888775432 12222233321 0 122469
Q ss_pred EEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-------CCeEEEEEcCCCC-----CCChhhhcCCCcce
Q 014525 267 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-------DRIKVIAATNRAD-----ILDPALMRSGRLDR 334 (423)
Q Consensus 267 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~v~vI~ttn~~~-----~l~~~l~~~~Rf~~ 334 (423)
|||||++.....+.+ .......+.++++...-.... .++.+|+|+|++. .++++++| || .
T Consensus 1340 lFiDEinmp~~d~yg-----~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG-----SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEEETTTCSCCCSSS-----CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred EEecccccccccccC-----chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 999999875443321 224556777777642211111 2688999999984 79999999 89 8
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcCC-CCCCCC-------------HHHHHHh-------CCCCcHHHHHHHHHHHHH
Q 014525 335 KIEFPHPTEEARARILQIHSRKMN-VHPDVN-------------FEELARS-------TDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~-------------l~~la~~-------~~g~s~~dl~~l~~~A~~ 389 (423)
++.++.|+.+++..|+..++.... ...++. +..+... ..-||.+|+.++++-...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 899999999999999998876432 111111 0111111 235789999998876554
No 92
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.28 E-value=8.1e-11 Score=116.91 Aligned_cols=218 Identities=19% Similarity=0.124 Sum_probs=128.7
Q ss_pred ccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHH-HHHhCCcEEEEc-cch---hhhhhhh
Q 014525 172 IGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC-AAQTNATFLKLA-GPQ---LVQMFIG 246 (423)
Q Consensus 172 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~al-a~~l~~~~i~v~-~~~---l~~~~~g 246 (423)
|.|++.++..+.-.+.-.-.. ....-++||.|+||| ||++|+++ ++.+....+... ++. +.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 777777665555444211000 011227999999999 99999999 665544332211 111 1100000
Q ss_pred chH-HHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc----CCCCCCCeEEEEEcCCCC-
Q 014525 247 DGA-KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD----GFSSDDRIKVIAATNRAD- 320 (423)
Q Consensus 247 ~~~-~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~----~~~~~~~v~vI~ttn~~~- 320 (423)
.+. ......+..| ..+|+|+|||+.+ .+..+..|.+.+++.. +..-..++.||+|+|+..
T Consensus 286 ~tG~~~~~G~l~LA---dgGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLA---DGGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHT---TTSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEc---CCCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 000 0000111122 2379999999996 5678889999987632 212234788999999865
Q ss_pred ----------CCChhhhcCCCcceEEE-cCCCCHHH-------------HHHHHHHHhh--cCCCC-CCCCHHHHHH---
Q 014525 321 ----------ILDPALMRSGRLDRKIE-FPHPTEEA-------------RARILQIHSR--KMNVH-PDVNFEELAR--- 370 (423)
Q Consensus 321 ----------~l~~~l~~~~Rf~~~i~-~~~p~~~~-------------r~~Il~~~~~--~~~~~-~~~~l~~la~--- 370 (423)
.|++++++ |||..+. +..|+.+. ..+++. +.+ ..... .+.....|..
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHH
Confidence 78899999 9987554 44554322 222222 222 11111 1111111110
Q ss_pred --------------hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 371 --------------STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 371 --------------~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
...|.|++.+..+++.|...|..+.+..|+.+|+..|+.-+..+-
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 245789999999999999999999999999999999999887653
No 93
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.28 E-value=7.7e-12 Score=96.80 Aligned_cols=74 Identities=34% Similarity=0.560 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q 014525 342 TEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415 (423)
Q Consensus 342 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~~~~ 415 (423)
+.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++....|+++||..|++++.++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999998643
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=1.1e-09 Score=106.03 Aligned_cols=190 Identities=17% Similarity=0.238 Sum_probs=118.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh--
Q 014525 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL-- 240 (423)
Q Consensus 163 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l-- 240 (423)
..+......++|.+..++.+.+ +. . +.++|+||+|+|||+|++.+++..+..++.+++...
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~---------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 68 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LR---------------A-PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEE 68 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TC---------------S-SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTT
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hc---------------C-CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcc
Confidence 3344566788999999998887 62 1 379999999999999999999998777778876542
Q ss_pred ---------hhhh---hh--------------------------c------hHHHHHHHHHHHHhC--CCeEEEECCchh
Q 014525 241 ---------VQMF---IG--------------------------D------GAKLVRDAFQLAKEK--SPCIIFIDEIDA 274 (423)
Q Consensus 241 ---------~~~~---~g--------------------------~------~~~~~~~~~~~a~~~--~~~vl~iDEid~ 274 (423)
.... +. . ....+..++...... .|.+|+|||+|.
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~ 148 (357)
T 2fna_A 69 RNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQE 148 (357)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGG
T ss_pred ccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHH
Confidence 0000 00 0 001223344444432 378999999999
Q ss_pred hhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC---------ChhhhcCCCcceEEEcCCCCHHH
Q 014525 275 IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL---------DPALMRSGRLDRKIEFPHPTEEA 345 (423)
Q Consensus 275 l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l---------~~~l~~~~Rf~~~i~~~~p~~~~ 345 (423)
+.... ..++...+..+.+.. .++.+|+|++....+ ...+. +|+...+.+++++.++
T Consensus 149 ~~~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 149 LVKLR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREE 213 (357)
T ss_dssp GGGCT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHH
T ss_pred hhccC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHH
Confidence 85310 112233444444431 256666666532111 11122 3666789999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHH
Q 014525 346 RARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVE 386 (423)
Q Consensus 346 r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~ 386 (423)
..+++...+...+...+ +...+...+.|+ |.-+..++..
T Consensus 214 ~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 214 AIEFLRRGFQEADIDFK-DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHHTCCCC-CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHhCCC-HHHHHHHHHH
Confidence 99999887654444333 247788888774 5556665543
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.17 E-value=9.7e-12 Score=94.98 Aligned_cols=80 Identities=23% Similarity=0.415 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-Hh-hhhhccc
Q 014525 344 EARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ-AK-KKASLNY 421 (423)
Q Consensus 344 ~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~~-~~-~~~~~~~ 421 (423)
++|.+||+.+++++++..++|+..|+..|.||||+||.++|++|++.|++++...|+++||..|+.++. ++ ....+.|
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDF 80 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHh
Confidence 468999999999988888899999999999999999999999999999999999999999999999984 43 3457788
Q ss_pred cC
Q 014525 422 YA 423 (423)
Q Consensus 422 ~~ 423 (423)
|+
T Consensus 81 y~ 82 (82)
T 2dzn_B 81 YK 82 (82)
T ss_dssp --
T ss_pred hC
Confidence 85
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.15 E-value=2.3e-09 Score=103.69 Aligned_cols=192 Identities=20% Similarity=0.243 Sum_probs=116.4
Q ss_pred CCCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh--
Q 014525 164 KPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV-- 241 (423)
Q Consensus 164 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~-- 241 (423)
.|...-..++|.+..++.+.+.+.. ++.++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~ 68 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAE 68 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccc
Confidence 3445557789999999999887642 15799999999999999999999876 6666654321
Q ss_pred ----------hhh---hh-------------------------chHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCC
Q 014525 242 ----------QMF---IG-------------------------DGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 283 (423)
Q Consensus 242 ----------~~~---~g-------------------------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~ 283 (423)
... .+ .....+..+...+....|.+|+|||+|.+....
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~---- 144 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG---- 144 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----
Confidence 100 00 001111122222222237999999999985310
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---------CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHh
Q 014525 284 VSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD---------ILDPALMRSGRLDRKIEFPHPTEEARARILQIHS 354 (423)
Q Consensus 284 ~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~---------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~ 354 (423)
......+...+..+++.. .++.+|+|+.... .....+. ||+...+.+++++.++..+++...+
T Consensus 145 ~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 145 SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHH
Confidence 001234445555554432 3566666654321 1111222 3666789999999999999998877
Q ss_pred hcCCCC-CCCCHHHHHHhCCCCcHHHHHHHHH
Q 014525 355 RKMNVH-PDVNFEELARSTDDFNGAQLKAVCV 385 (423)
Q Consensus 355 ~~~~~~-~~~~l~~la~~~~g~s~~dl~~l~~ 385 (423)
...+.. .+.....+...+.|+ |.-+..++.
T Consensus 217 ~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 217 REVNLDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp HTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 644433 122356677777764 555655554
No 97
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.12 E-value=3e-10 Score=90.91 Aligned_cols=101 Identities=26% Similarity=0.426 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCCCceEEEEc
Q 014525 41 ELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPV 120 (423)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (423)
+..+++.+++.++.++..++++++.++.+|..+|++.+.+++. .++++.++++.+++++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~---------------------~~iVk~s~g~~~~V~v 66 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDG---------------------RVVVKSSTGPKFVVNT 66 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTS---------------------CEEEEETTSCEEEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCC---------------------EEEEEeCCCCEEEEEc
Confidence 4456777888888999999999999999999999999999854 6888889999999999
Q ss_pred ccccCCCCCCCCCeeeecccceeeeecCCCcccccccccccc
Q 014525 121 VGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVD 162 (423)
Q Consensus 121 ~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 162 (423)
.+.++++.++||++|.++.++..++..||...++.+..|+++
T Consensus 67 ~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 67 SQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp CTTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred ccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 999999999999999999999999999999999988877653
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.10 E-value=8e-11 Score=105.46 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=63.5
Q ss_pred CCCcccccCchHHHHHHHHHHHccccChhHHhhhC-CCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh
Q 014525 166 TEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLG-VRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 241 (423)
Q Consensus 166 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~ 241 (423)
..+|+++++.+...+.+.+.+...+.. .. ..++.+++|+||||||||++|+++++.+ +.+++.++++++.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAE------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHH------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHH------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 357888888764444333333222111 10 0123789999999999999999999988 6788889988876
Q ss_pred hhhhhchH-HHHHHHHHHHHhCCCeEEEECCchhh
Q 014525 242 QMFIGDGA-KLVRDAFQLAKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 242 ~~~~g~~~-~~~~~~~~~a~~~~~~vl~iDEid~l 275 (423)
..+..... .....++..... +.+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 65432111 011223333333 359999999765
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.06 E-value=3.4e-10 Score=96.65 Aligned_cols=105 Identities=14% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
+...++|+||+|+|||+|+++++..+ +...+++++.++... .....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 34579999999999999999999987 666888888766543 112346899999998863
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcC-CCCCCC--hhhhcCCCcceEEEc
Q 014525 280 FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATN-RADILD--PALMRSGRLDRKIEF 338 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn-~~~~l~--~~l~~~~Rf~~~i~~ 338 (423)
... +..+..+++.+.. .+..++|.||| .|..+. +.+.+ |+..-..+
T Consensus 97 -------~~~-~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 97 -------NEE-QALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp -------SHH-HHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred -------hHH-HHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 222 5677777765432 12332444555 455433 88887 77554333
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.98 E-value=3.1e-10 Score=108.77 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=60.2
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHhC----CcEEEEccchhhh
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQLVQ 242 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~~~l~~ 242 (423)
.+|+++.+.......+...+...+ ...+-.++.+++|+||||||||+||+++|+.+. .+++.+++++++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i------~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFV------EQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHH------HHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHH------HhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 578888875432222222222111 111111356899999999999999999998664 7888889888776
Q ss_pred hhhhch-HHHHHHHHHHHHhCCCeEEEECCchhh
Q 014525 243 MFIGDG-AKLVRDAFQLAKEKSPCIIFIDEIDAI 275 (423)
Q Consensus 243 ~~~g~~-~~~~~~~~~~a~~~~~~vl~iDEid~l 275 (423)
.+.+.. .+.....+.... .+.+|+|||++..
T Consensus 195 ~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 195 DVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 554321 111112222232 2469999999664
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.92 E-value=3.3e-08 Score=116.90 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=110.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 284 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~ 284 (423)
.+.++.||+|||||++++++|+.+|.+++.++|++-+.. ..+..+|..+.... +.++||||+.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhc---------
Confidence 578999999999999999999999999999999875432 23344555554433 79999999996
Q ss_pred CCcHHHHHHHHHHHHhhc---------------CCCCCCCeEEEEEcCC----CCCCChhhhcCCCcceEEEcCCCCHHH
Q 014525 285 SGDREVQRTMLELLNQLD---------------GFSSDDRIKVIAATNR----ADILDPALMRSGRLDRKIEFPHPTEEA 345 (423)
Q Consensus 285 ~~~~~~~~~l~~ll~~~~---------------~~~~~~~v~vI~ttn~----~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 345 (423)
++++...+.+.+..+. .+....++.|++|.|+ ...|++++++ || +.+.+..|+.+.
T Consensus 710 --~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 710 --DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred --ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 5677777655443211 0112346778999995 3469999988 88 689999999988
Q ss_pred HHHHHHHHhhcCCCCCCC-----CH-HHHHHh-----CCCCcHHHHHHHHHHHHHHH
Q 014525 346 RARILQIHSRKMNVHPDV-----NF-EELARS-----TDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 346 r~~Il~~~~~~~~~~~~~-----~l-~~la~~-----~~g~s~~dl~~l~~~A~~~A 391 (423)
..+|+-... .+...... .+ ..+... ...|..+.++.++..|...-
T Consensus 785 i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 785 IAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 888753322 11111000 01 111111 12367788999888776543
No 102
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.91 E-value=2.3e-10 Score=108.83 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCC--cEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~--~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
|+.+++.++|+||||||||+||.++|...+. .|+.+...+.+..+....+..+..+.+.+.... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 3445556899999999999999999987543 455552233333333344455555666666554 999999999865
Q ss_pred cCCC-CCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhh
Q 014525 278 KRFD-SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPAL 326 (423)
Q Consensus 278 ~r~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l 326 (423)
...+ +..+. ..+.+.+++..+..+....++.+|+++| +...++++
T Consensus 197 ~~~~~s~~G~---v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGG---ISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccch---HHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 4322 11111 1122333333332222223567888888 44444443
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.80 E-value=4.2e-09 Score=94.16 Aligned_cols=126 Identities=18% Similarity=0.193 Sum_probs=78.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHh--------C-CcEEEEccchhhhhhh----------hchHH--HHHHHHHHH--HhC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT--------N-ATFLKLAGPQLVQMFI----------GDGAK--LVRDAFQLA--KEK 262 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l--------~-~~~i~v~~~~l~~~~~----------g~~~~--~~~~~~~~a--~~~ 262 (423)
..|++|+||||||++|.+++... + .+++..++.++.-... ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 57899999999999998865432 4 6666677665532211 00000 001222221 233
Q ss_pred CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCCCC
Q 014525 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 342 (423)
Q Consensus 263 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~ 342 (423)
.++||+|||++.+.+.+.+.. .. ..++..+.. .....+-||.+|+.+..++.+++. |++..+++++|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~--e~-------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS--KI-------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC--CC-------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCccccc--hh-------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 468999999999976542211 11 123333332 233456778888889999999987 999999998764
Q ss_pred H
Q 014525 343 E 343 (423)
Q Consensus 343 ~ 343 (423)
.
T Consensus 155 ~ 155 (199)
T 2r2a_A 155 M 155 (199)
T ss_dssp S
T ss_pred c
Confidence 4
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.75 E-value=1.2e-07 Score=112.81 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=108.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh-CCcEEEEccchhhhhhhhchHHHHHHHHHH-H---Hh------------CCCeE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQLVQMFIGDGAKLVRDAFQL-A---KE------------KSPCI 266 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l-~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~-a---~~------------~~~~v 266 (423)
.+++||+||||||||.++......+ +.+++.++++.... ...+...++. . +. ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4679999999999998876655444 66778888875432 1222222221 0 10 12259
Q ss_pred EEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCC-------CCCeEEEEEcCCCC-----CCChhhhcCCCcce
Q 014525 267 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-------DDRIKVIAATNRAD-----ILDPALMRSGRLDR 334 (423)
Q Consensus 267 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~-------~~~v~vI~ttn~~~-----~l~~~l~~~~Rf~~ 334 (423)
+||||++.-..... +.......|.++++...-+.. ..++.+|+|+|+|. .++++++| || .
T Consensus 1378 lFiDDiNmp~~D~y-----GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKY-----GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-P 1449 (3245)
T ss_dssp EEETTTTCCCCCTT-----SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-C
T ss_pred EEecccCCCCcccc-----ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-e
Confidence 99999987433221 122456678888875432221 13688999999873 59999998 89 5
Q ss_pred EEEcCCCCHHHHHHHHHHHhhcCC-CCCCCC--HHHHHH-----------h-------CCCCcHHHHHHHHHHHHH
Q 014525 335 KIEFPHPTEEARARILQIHSRKMN-VHPDVN--FEELAR-----------S-------TDDFNGAQLKAVCVEAGM 389 (423)
Q Consensus 335 ~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~--l~~la~-----------~-------~~g~s~~dl~~l~~~A~~ 389 (423)
++.++.|+.+....|+..++..+. ..+.+. ...++. . ..-||.+|+..+++-...
T Consensus 1450 vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~ 1525 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLE 1525 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHH
Confidence 699999999999999876654322 111111 111111 0 234789999998876543
No 105
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.75 E-value=8.2e-09 Score=91.74 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccC
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKR 279 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r 279 (423)
+++..+++||+||||||||++|.++|+.+...++.+..+.. ..+ +..+ ....+++|||++.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~~--- 116 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTTC--- 116 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHHH---
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCchh---
Confidence 33444579999999999999999999998655443221110 000 0111 113489999998521
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhc---CCCCCC-----CeEEEEEcCCC---CCCChhhhcCCCcceEEEcCCC
Q 014525 280 FDSEVSGDREVQRTMLELLNQLD---GFSSDD-----RIKVIAATNRA---DILDPALMRSGRLDRKIEFPHP 341 (423)
Q Consensus 280 ~~~~~~~~~~~~~~l~~ll~~~~---~~~~~~-----~v~vI~ttn~~---~~l~~~l~~~~Rf~~~i~~~~p 341 (423)
...+...+..+++... ....+. ...+|.|||.. +.--+.+.+ |+ .++.|+.|
T Consensus 117 -------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~ 179 (212)
T 1tue_A 117 -------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNA 179 (212)
T ss_dssp -------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSC
T ss_pred -------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCC
Confidence 1122333444444310 011111 34688899963 223356777 87 47777733
No 106
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.68 E-value=1.1e-07 Score=72.19 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEEEEecCCCceEEEEcccccCCCCCCCCC
Q 014525 54 EKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGD 133 (423)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (423)
+++..+++++++++.+|..+|++.+.+++. +++++.++++.+++++.+.++.+.++||+
T Consensus 2 ~ev~~lkeei~~L~~~P~~vG~v~e~~dd~---------------------~~iVkss~g~~~~V~v~~~Vd~~~LkpG~ 60 (85)
T 3h43_A 2 KENEILRRELDRMRVPPLIVGTVVDKVGER---------------------KVVVKSSTGPSFLVNVSHFVNPDDLAPGK 60 (85)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEEETT---------------------EEEEEETTSSEEEEEBCTTSCGGGCCTTC
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEEcCCC---------------------EEEEEeCCCCeEEEEecCccCHHHCCCCC
Confidence 467788999999999999999999999865 89999999999999999999999999999
Q ss_pred eeeecccceeeeecCCC
Q 014525 134 LVGVNKDSYLILDTLPS 150 (423)
Q Consensus 134 ~~~i~~~~~~~~~~l~~ 150 (423)
+|.++.++..++..||.
T Consensus 61 rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 61 RVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp EEEECTTTCCEEEECC-
T ss_pred EEEECCcccCHhhhhhh
Confidence 99999999999998875
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.58 E-value=3.8e-07 Score=88.34 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=110.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CC-cE--EEEccchhhhhhhhchHHHHHHHHHHHH----hCCCeEEEECCch
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NA-TF--LKLAGPQLVQMFIGDGAKLVRDAFQLAK----EKSPCIIFIDEID 273 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~-~~--i~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid 273 (423)
+..+|||||+|+||++.++++++.+ +. ++ +.++.. ..++.+.+.+. ...+.|++|||+|
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 4579999999999999999998865 22 22 222211 11223333332 3456899999999
Q ss_pred h-hhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC-----CCCCChhhhcCCCcceEEEcCCCCHHHHH
Q 014525 274 A-IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR-----ADILDPALMRSGRLDRKIEFPHPTEEARA 347 (423)
Q Consensus 274 ~-l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~-----~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 347 (423)
. +.. ..++.|..++.. .+.+.++|+++++. ...+.+++.+ |. .++.|.+++..+..
T Consensus 87 ~kl~~-----------~~~~aLl~~le~----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 87 NGPNA-----------AINEQLLTLTGL----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp SCCCT-----------THHHHHHHHHTT----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCCCh-----------HHHHHHHHHHhc----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 8 631 234455555543 22234444444432 1235677776 65 68899999999999
Q ss_pred HHHHHHhhcCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 014525 348 RILQIHSRKMNVHP-DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411 (423)
Q Consensus 348 ~Il~~~~~~~~~~~-~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~al~~~ 411 (423)
..++..+...++.- +..+..|+..+.| +.+.+.+.+......+ +...||.+++...+...
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 99988887766542 2235666766654 6677777776665443 34579999988776544
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.58 E-value=1e-07 Score=109.49 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=73.5
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh----hhhhh------------chHHHHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV----QMFIG------------DGAKLVRDAFQLAKE 261 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~----~~~~g------------~~~~~~~~~~~~a~~ 261 (423)
+.++++++|+||||||||+||.+++.+. +..+.+++..+.+ ....| ..+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7788899999999999999999998875 5566667655332 11222 334566667778888
Q ss_pred CCCeEEEECCchhhhccC---CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q 014525 262 KSPCIIFIDEIDAIGTKR---FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAAT 316 (423)
Q Consensus 262 ~~~~vl~iDEid~l~~~r---~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~tt 316 (423)
..|++|+||+++.+.+.+ .+........-.+.+.++|..+.+.....++.||+|-
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 999999999999887642 1111111111123444455444444444566555553
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.53 E-value=4.2e-07 Score=108.36 Aligned_cols=124 Identities=18% Similarity=0.267 Sum_probs=91.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS 285 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~ 285 (423)
+..+.||+|||||.+++.+|+.+|.+++.++|++-+.. ..+..+|..+-.. .+-.+||||+++
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl---------- 668 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL---------- 668 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS----------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC----------
Confidence 46799999999999999999999999999999875432 2233444444433 368899999996
Q ss_pred CcHHHHHHHHHHHHhh----------------cCCCCCCCeEEEEEcCC----CCCCChhhhcCCCcceEEEcCCCCHHH
Q 014525 286 GDREVQRTMLELLNQL----------------DGFSSDDRIKVIAATNR----ADILDPALMRSGRLDRKIEFPHPTEEA 345 (423)
Q Consensus 286 ~~~~~~~~l~~ll~~~----------------~~~~~~~~v~vI~ttn~----~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 345 (423)
+.++...+.+.+..+ ..+.-..++.|++|.|+ ...|+.+++. || +.|.++.||.+.
T Consensus 669 -~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 669 -EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 556666666554311 11222346889999995 3569999998 88 679999999888
Q ss_pred HHHHH
Q 014525 346 RARIL 350 (423)
Q Consensus 346 r~~Il 350 (423)
..+|+
T Consensus 745 i~ei~ 749 (3245)
T 3vkg_A 745 IAQVM 749 (3245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.49 E-value=1.7e-07 Score=87.02 Aligned_cols=119 Identities=22% Similarity=0.243 Sum_probs=68.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 283 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~ 283 (423)
.++++|+||||||||++|.+||+.+.. +..++.+.- .. .+..+ ....|+++||.....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~--~f----------~l~~~--~~k~i~l~Ee~~~~~------- 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE--NF----------PFNDC--VDKMVIWWEEGKMTA------- 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS--SC----------TTGGG--SSCSEEEECSCCEET-------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc--cc----------ccccc--cccEEEEeccccchh-------
Confidence 457999999999999999999997643 222332110 00 11111 223567777776542
Q ss_pred CCCcHHHHHHHHHHHHh----hcCCC----CCCCeEEEEEcCC-C----------CCCChhhhcCCCcceEEEcC-----
Q 014525 284 VSGDREVQRTMLELLNQ----LDGFS----SDDRIKVIAATNR-A----------DILDPALMRSGRLDRKIEFP----- 339 (423)
Q Consensus 284 ~~~~~~~~~~l~~ll~~----~~~~~----~~~~v~vI~ttn~-~----------~~l~~~l~~~~Rf~~~i~~~----- 339 (423)
+.+..+..++.. ++... .-....+|.|||. + +...+.|.+ |+ .++.|+
T Consensus 162 -----d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p~ 233 (267)
T 1u0j_A 162 -----KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLDH 233 (267)
T ss_dssp -----TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCCT
T ss_pred -----HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCCc
Confidence 122334444431 11100 1135667888885 1 134577877 77 677887
Q ss_pred ---CCCHHHHHHHHHH
Q 014525 340 ---HPTEEARARILQI 352 (423)
Q Consensus 340 ---~p~~~~r~~Il~~ 352 (423)
+.+.++...++..
T Consensus 234 ~~~~lt~~~~~~f~~w 249 (267)
T 1u0j_A 234 DFGKVTKQEVKDFFRW 249 (267)
T ss_dssp TSCCCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHH
Confidence 6677777777763
No 111
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.48 E-value=7.8e-08 Score=94.25 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=74.6
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh-hhhhhchHHHHHHHHHHHHhCCCeEEEECCchhhhc-
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV-QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT- 277 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~-~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~- 277 (423)
+++++..++|+||||+|||+++++++..++..++.+..+.-. ..++| ......++++||++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg-------------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELG-------------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHG-------------GGTTCSCEEETTCCCSTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHH-------------HhcchhHHHHHHHHHHHHH
Confidence 667778899999999999999999999988776654433210 00111 112235689999998865
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCC
Q 014525 278 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPH 340 (423)
Q Consensus 278 ~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 340 (423)
.+.-. .+. .+. ....+.+.+++ .+.|++++|+++.+ ++++++||++..+...+
T Consensus 232 ~r~l~--~~~-~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ-GIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS-HHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC-cch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22110 011 111 11222333333 35578899999999 78888888887666544
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.48 E-value=7.3e-07 Score=78.12 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATF 232 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~ 232 (423)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876443
No 113
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.44 E-value=1.5e-06 Score=78.16 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCcchhccCcccccccccCCcEE
Q 014525 27 ASRLLDNEIRVLKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCV 106 (423)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (423)
+++.++.++..|..++..|...++.++.++..+++++++++.+|+.++++.+.+++. ..
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~---------------------~a 113 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDD---------------------TV 113 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSS---------------------CE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCC---------------------EE
Confidence 456677888888888999999999999999999999999999999999999988754 56
Q ss_pred EEecCCCceEEEEcccccCCCCCCCCCeeeecccceeeeecCCCcccc
Q 014525 107 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDS 154 (423)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~ 154 (423)
++. +.++.+++.+.+.++.+.++||+.|.++ .+..+++.+|.....
T Consensus 114 iV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~G 159 (251)
T 3m9b_A 114 DVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVG 159 (251)
T ss_dssp EEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCS
T ss_pred EEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCcc
Confidence 666 4678888999999999999999999996 588888888765433
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.14 E-value=1.4e-05 Score=72.08 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|+.++..++|+||||+|||+|++.++..+ +..++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45566679999999999999999999654 455555543
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.13 E-value=3e-06 Score=82.21 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh----hh------------hchHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----FI------------GDGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~----~~------------g~~~~~~~~~~~~a~ 260 (423)
|+.++..++|+||||+|||+|+..++..+ +..+++++....... .+ ...+..+..+...++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45566679999999999999999998875 566777776542110 00 112222222223334
Q ss_pred hCCCeEEEECCchhhhc
Q 014525 261 EKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~ 277 (423)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 56789999999998875
No 116
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.13 E-value=5.6e-06 Score=80.76 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=51.2
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhh----hh------------chHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMF----IG------------DGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~----~g------------~~~~~~~~~~~~a~ 260 (423)
|++++..++|+||||+|||+||..++... +.++++++...-.... .| ..+..+..+...++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566679999999999999999988764 5677777754321111 11 11222222222334
Q ss_pred hCCCeEEEECCchhhhc
Q 014525 261 EKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~ 277 (423)
...+.+|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999999875
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.08 E-value=2.7e-06 Score=82.59 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=50.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh----hhh------------chHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----FIG------------DGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~----~~g------------~~~~~~~~~~~~a~ 260 (423)
|+.++..++|+||||+|||+||..++... +..+++++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566679999999999999999998764 556666765432111 111 11222222223344
Q ss_pred hCCCeEEEECCchhhhc
Q 014525 261 EKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~ 277 (423)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 118
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.08 E-value=8.5e-05 Score=77.03 Aligned_cols=174 Identities=10% Similarity=0.090 Sum_probs=95.9
Q ss_pred cccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHH-------hCCcEEEEccchh-
Q 014525 169 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ-------TNATFLKLAGPQL- 240 (423)
Q Consensus 169 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~-------l~~~~i~v~~~~l- 240 (423)
...++|.+..+..|.+.+...- ...+.++|+||+|+|||+||..+++. ....++.++.+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 4568999999999999774310 12356999999999999999998742 1122344433221
Q ss_pred ----hhhh------hh----------ch-HHHHHHHHHHHHh-CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHH
Q 014525 241 ----VQMF------IG----------DG-AKLVRDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELL 298 (423)
Q Consensus 241 ----~~~~------~g----------~~-~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll 298 (423)
...+ .+ .. ......+...... ..|.+|+||+++.. . .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~-------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W-------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H-------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H-------HH
Confidence 1111 00 01 1112222222222 25789999999752 1 12
Q ss_pred HhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEE-cCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcH
Q 014525 299 NQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE-FPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNG 377 (423)
Q Consensus 299 ~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~-~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~ 377 (423)
..+ ..+..||.||..+.... ... +.. ..+. +.+++.++-.+++......-..........|+..+.|. |
T Consensus 252 ~~l-----~~~~~ilvTsR~~~~~~--~~~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-P 321 (591)
T 1z6t_A 252 KAF-----DSQCQILLTTRDKSVTD--SVM-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-P 321 (591)
T ss_dssp HTT-----CSSCEEEEEESCGGGGT--TCC-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-H
T ss_pred HHh-----cCCCeEEEECCCcHHHH--hcC-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-c
Confidence 221 23456777776432111 001 121 2222 24789999999998876531111123467888888875 4
Q ss_pred HHHHHH
Q 014525 378 AQLKAV 383 (423)
Q Consensus 378 ~dl~~l 383 (423)
--|..+
T Consensus 322 Lal~~~ 327 (591)
T 1z6t_A 322 LVVSLI 327 (591)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445443
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.01 E-value=7.1e-06 Score=74.78 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHH--h-------CCcEEEEccchh------hhh--hhhc---------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQ--T-------NATFLKLAGPQL------VQM--FIGD--------------- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~--l-------~~~~i~v~~~~l------~~~--~~g~--------------- 247 (423)
|+.++..++|+||||+|||+|++.++.. + +...++++.... ... .+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566667999999999999999999985 2 346777765441 000 0110
Q ss_pred -hH---HHHHHHHHHHHhCCCeEEEECCchhhhc
Q 014525 248 -GA---KLVRDAFQLAKEKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 248 -~~---~~~~~~~~~a~~~~~~vl~iDEid~l~~ 277 (423)
.. ..+..+...+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 01 1122234445557889999999998764
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.01 E-value=7.9e-06 Score=78.51 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchh--hh------hhhhc---------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQL--VQ------MFIGD--------------- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l--~~------~~~g~--------------- 247 (423)
|++++..++|+||||+|||++|..++... +..+++++...- .. ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56666679999999999999999999865 456777776542 00 00110
Q ss_pred -hH---HHHHHHHHHHHh-CCCeEEEECCchhhhcc
Q 014525 248 -GA---KLVRDAFQLAKE-KSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 248 -~~---~~~~~~~~~a~~-~~~~vl~iDEid~l~~~ 278 (423)
.+ ..+..+...++. ..+.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 122334445555 67899999999998743
No 121
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.98 E-value=2.7e-05 Score=71.16 Aligned_cols=26 Identities=42% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACA 225 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala 225 (423)
|+.++..+.|.||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44566779999999999999999998
No 122
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.98 E-value=6.8e-06 Score=79.93 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=50.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhh----hhh-----------chHHHHHHHHH-HHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQM----FIG-----------DGAKLVRDAFQ-LAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~----~~g-----------~~~~~~~~~~~-~a~ 260 (423)
|++++..++|+||||+|||+||..++... +.++++++...-... ..| .....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999998765 567777776322111 011 01111222222 334
Q ss_pred hCCCeEEEECCchhhhc
Q 014525 261 EKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~ 277 (423)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999874
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.98 E-value=8.7e-06 Score=72.99 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~ 239 (423)
|+.++..++|+||||+|||+++..++...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566667999999999999999999985567777777543
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.95 E-value=1.9e-05 Score=68.44 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=31.7
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
+..++|+|+||+|||++++++++.++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 3468999999999999999999999988887765444
No 125
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.94 E-value=3.2e-05 Score=76.99 Aligned_cols=156 Identities=24% Similarity=0.263 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCc---HHHHHHHHHHHHhhcCC-----CCCCCeEEEEEc----C
Q 014525 250 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGD---REVQRTMLELLNQLDGF-----SSDDRIKVIAAT----N 317 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~---~~~~~~l~~ll~~~~~~-----~~~~~v~vI~tt----n 317 (423)
.........+..+ +|+++||||+++....+ ..++ ..+|+.|+++++.-... -..+++++|+|. +
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~ 314 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA 314 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccC
Confidence 3344455555333 59999999999865432 1222 23778888888742111 123578899887 2
Q ss_pred CCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHH--------HHhhc---CCCC---CCCCHHHHHH-------hCCCCc
Q 014525 318 RADILDPALMRSGRLDRKIEFPHPTEEARARILQ--------IHSRK---MNVH---PDVNFEELAR-------STDDFN 376 (423)
Q Consensus 318 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~Il~--------~~~~~---~~~~---~~~~l~~la~-------~~~g~s 376 (423)
.+..+.|+|+. ||+.++.|+.++.++..+|+. .+... .+.. .+..+..|+. ++....
T Consensus 315 ~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~G 392 (444)
T 1g41_A 315 RPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIG 392 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCG
T ss_pred ChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCC
Confidence 34446689987 999999999999999999983 11111 1111 1223556665 345555
Q ss_pred HHHHHHHHHHHHHHHHHh------CCCCcCHHHHHHHHHHH
Q 014525 377 GAQLKAVCVEAGMLALRR------DATEVNHEDFNEGIIQV 411 (423)
Q Consensus 377 ~~dl~~l~~~A~~~A~~~------~~~~It~~d~~~al~~~ 411 (423)
++.++.++..++..+..+ ....||.+++.+.+...
T Consensus 393 aR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 393 ARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp GGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCcc
Confidence 677766666555443322 12358999988877554
No 126
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.93 E-value=0.00015 Score=74.20 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=57.3
Q ss_pred CeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--CCChhhhcCCCcceEEEcCCC
Q 014525 264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD--ILDPALMRSGRLDRKIEFPHP 341 (423)
Q Consensus 264 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~~~~Rf~~~i~~~~p 341 (423)
+-+|+|||++.+.... ..++...+.++....+ .-++.+|++|.+|. .++..++. -|...|.|...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GR----a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIAQKAR----AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCT----TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHh----hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3689999999886431 2355666667776643 34788999999887 78888887 89999999999
Q ss_pred CHHHHHHHHH
Q 014525 342 TEEARARILQ 351 (423)
Q Consensus 342 ~~~~r~~Il~ 351 (423)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888887774
No 127
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.92 E-value=1.2e-05 Score=77.97 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=51.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchhh--h---hh---hhc---------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQLV--Q---MF---IGD--------------- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l~--~---~~---~g~--------------- 247 (423)
|++++..++|+||||+|||++|..+|... +..+++++....+ . .+ .|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 55666668999999999999999999862 4567777654420 0 00 110
Q ss_pred -hH---HHHHHHHHHHHh--CCCeEEEECCchhhhcc
Q 014525 248 -GA---KLVRDAFQLAKE--KSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 248 -~~---~~~~~~~~~a~~--~~~~vl~iDEid~l~~~ 278 (423)
.+ ..+..+...+.. ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 11 112223344555 67899999999998743
No 128
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.87 E-value=0.00019 Score=80.51 Aligned_cols=175 Identities=11% Similarity=0.134 Sum_probs=100.3
Q ss_pred CCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh-------CCcEEEEccch
Q 014525 167 EDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT-------NATFLKLAGPQ 239 (423)
Q Consensus 167 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l-------~~~~i~v~~~~ 239 (423)
.....++|.+..++.|.+.+...- ..++.+.|+|+.|+|||+||+.+++.. ...++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 345668999999999999874221 133568899999999999999988752 12233444332
Q ss_pred h-----hhh-------hh---------hchHHHHHHHHHHHHh--CCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHH
Q 014525 240 L-----VQM-------FI---------GDGAKLVRDAFQLAKE--KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLE 296 (423)
Q Consensus 240 l-----~~~-------~~---------g~~~~~~~~~~~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 296 (423)
. ... .. ......+...+..... ..+.+|+||+++... .
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------~--- 250 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------V--- 250 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------H---
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------H---
Confidence 1 100 00 0011111122222222 236899999997531 1
Q ss_pred HHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCCcceEEEcCC-CCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCC
Q 014525 297 LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPH-PTEEARARILQIHSRKMNVHPDVNFEELARSTDDF 375 (423)
Q Consensus 297 ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~-p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~ 375 (423)
+. .+ ..+..||.||..+..... .. .....+.+++ ++.++-.++|..+..............|++.+.|.
T Consensus 251 -~~---~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 251 -LK---AF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp -HT---TT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred -HH---hh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 11 11 234467778775433211 11 2335677775 89999999998776433322223367888999876
Q ss_pred cHHHHHH
Q 014525 376 NGAQLKA 382 (423)
Q Consensus 376 s~~dl~~ 382 (423)
|-.|..
T Consensus 321 -PLal~~ 326 (1249)
T 3sfz_A 321 -PLVVSL 326 (1249)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 433443
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.85 E-value=1.9e-05 Score=77.89 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=49.2
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccchhhh--------hhhhc---------------
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQLVQ--------MFIGD--------------- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~l~~--------~~~g~--------------- 247 (423)
|+.+...++|+||||+|||+|++.++-.. +...++++..+... ..+|.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666679999999999999999776433 23467776543210 00110
Q ss_pred -h---HHHHHHHHHHHHhCCCeEEEECCchhhhcc
Q 014525 248 -G---AKLVRDAFQLAKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 248 -~---~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 278 (423)
. ...+..+...+....|.+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 111223334445577899999999888654
No 130
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.82 E-value=1.4e-05 Score=72.13 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
|+.++..+.|.||+|+|||+|++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566679999999999999999999854
No 131
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.81 E-value=3.6e-05 Score=77.53 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=34.5
Q ss_pred CCCccccc-CchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 166 TEDYNDIG-GLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 166 ~~~~~~i~-G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.+|+++- +|..++..+...+.. ..+.++|.||||||||+++.+++..+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35666653 555566555555431 22379999999999999999999877
No 132
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.81 E-value=2e-05 Score=74.70 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=49.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccchhhhh----hhh------------chHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGPQLVQM----FIG------------DGAKLVRDAFQL 258 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~~l~~~----~~g------------~~~~~~~~~~~~ 258 (423)
|+.+. .++|+||||+|||+|+-.++... +..+++++..+-... -.| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 68999999999999987776543 567888876542211 011 112220122222
Q ss_pred ---HHhCCCeEEEECCchhhhcc
Q 014525 259 ---AKEKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 259 ---a~~~~~~vl~iDEid~l~~~ 278 (423)
++...|.+|+||-|..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 35667999999999999753
No 133
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.81 E-value=7.3e-06 Score=72.08 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=19.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.-++++||+|+|||+++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999996666544
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.80 E-value=4.1e-05 Score=88.32 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=55.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhhhhh----h------------chHHHHHHHHHHHH
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFI----G------------DGAKLVRDAFQLAK 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~~~~----g------------~~~~~~~~~~~~a~ 260 (423)
|++++..++|+||||||||+||.+++.+. +.+.++++..+...... | ..+..........+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46777889999999999999999998754 67788888765433322 1 11222333334445
Q ss_pred hCCCeEEEECCchhhhcc
Q 014525 261 EKSPCIIFIDEIDAIGTK 278 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~~ 278 (423)
...|.+|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 577999999999998654
No 135
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.79 E-value=0.00047 Score=62.17 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=84.8
Q ss_pred CceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc--------hhhhhhh----------hc--hHHHHHHHHHHHHhC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP--------QLVQMFI----------GD--GAKLVRDAFQLAKEK 262 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~--------~l~~~~~----------g~--~~~~~~~~~~~a~~~ 262 (423)
.+++.|+||||||+++-.+|..+ |..++.++.. .+..... |. .+..+..+. ..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----KA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----HH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----hc
Confidence 58999999999999999998876 5555544442 1111100 00 111122221 23
Q ss_pred CCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCC------------------CCCCCh
Q 014525 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR------------------ADILDP 324 (423)
Q Consensus 263 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~------------------~~~l~~ 324 (423)
.|.++++||+-...... ..+......+..++. ..+-+++|+|. .+.++.
T Consensus 84 ~pdlvIVDElG~~~~~~-----~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPG-----SRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCTT-----CSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCccc-----chhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 57999999987642111 011111222222222 23447788772 245677
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014525 325 ALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 391 (423)
Q Consensus 325 ~l~~~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~s~~dl~~l~~~A~~~A 391 (423)
.++. +.+.+..+..|..+ +++.+....-..++..-..+... |+...|.++-..|...+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTA 208 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHH
Confidence 7776 67777777766544 22333332222333333444443 56777777666565554
No 136
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=1.3e-05 Score=71.11 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=29.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++..++|.||||+|||++++.+++.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4556799999999999999999999999887644
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.77 E-value=9.5e-05 Score=67.29 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=29.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|+.++..++|+||||+|||+++..++... +.++++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 55666779999999999999998887643 556666654
No 138
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.76 E-value=2.7e-05 Score=75.53 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------CCcEEEEccch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------NATFLKLAGPQ 239 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------~~~~i~v~~~~ 239 (423)
|++++..+.|+||||+|||+|++.++... +..+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 56666679999999999999999999876 23557776543
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.74 E-value=0.00025 Score=72.98 Aligned_cols=169 Identities=13% Similarity=0.101 Sum_probs=92.5
Q ss_pred cCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHH----HhCCc---EEEEccchh-----
Q 014525 173 GGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAA----QTNAT---FLKLAGPQL----- 240 (423)
Q Consensus 173 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~----~l~~~---~i~v~~~~l----- 240 (423)
+|.+..++.|.+.+... +-...+.+.|+|+.|+|||+||+.+++ ..... .+.++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999987421 111345689999999999999999997 23221 223333321
Q ss_pred ---hhhh---hhch-------------HH-HHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHh
Q 014525 241 ---VQMF---IGDG-------------AK-LVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQ 300 (423)
Q Consensus 241 ---~~~~---~g~~-------------~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~ 300 (423)
.... .+.. .. ....+......+.+.+|+||+++... .+ .+ ..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~-~~-~~ 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI-RW-AQ 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH-HH-HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh-cc-cc
Confidence 1110 1100 11 12222233333336899999997631 11 11 11
Q ss_pred hcCCCCCCCeEEEEEcCCCCCCChhhhc-CCCcceEEEcCCCCHHHHHHHHHHHhhcCCCCCC--CCHHHHHHhCCCCcH
Q 014525 301 LDGFSSDDRIKVIAATNRADILDPALMR-SGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD--VNFEELARSTDDFNG 377 (423)
Q Consensus 301 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~-~~Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~--~~l~~la~~~~g~s~ 377 (423)
. .+..||.||.... +.. .+.....+.+++++.++-.++|..+......... .....|++.+.|. |
T Consensus 263 ~------~gs~ilvTTR~~~-----v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-P 330 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVE-----ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-P 330 (549)
T ss_dssp H------TTCEEEEEESBGG-----GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-H
T ss_pred c------CCCEEEEEcCCHH-----HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-h
Confidence 1 2345777776322 211 1123357899999999999998877432111000 0145566777764 4
Q ss_pred HHHH
Q 014525 378 AQLK 381 (423)
Q Consensus 378 ~dl~ 381 (423)
-.|.
T Consensus 331 LAl~ 334 (549)
T 2a5y_B 331 ATLM 334 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3343
No 140
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.74 E-value=5.2e-05 Score=73.67 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=44.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEcc-chhhh---------hhhhchHHHHHHHHHHHHhCCCeEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG-PQLVQ---------MFIGDGAKLVRDAFQLAKEKSPCIIF 268 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~-~~l~~---------~~~g~~~~~~~~~~~~a~~~~~~vl~ 268 (423)
+...++|.||+|+||||++++++..+ +..++.+.- .++.. ...+.........+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34468999999999999999998876 233433321 11110 01111111233456667778899999
Q ss_pred ECCch
Q 014525 269 IDEID 273 (423)
Q Consensus 269 iDEid 273 (423)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99983
No 141
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.71 E-value=1.7e-05 Score=69.28 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=29.0
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
+..++|+||||+|||++++.+|+.++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999998887543
No 142
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.70 E-value=2.8e-05 Score=74.45 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---------------C----CcEEEEccchh--hhh---h---hhc-----
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---------------N----ATFLKLAGPQL--VQM---F---IGD----- 247 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---------------~----~~~i~v~~~~l--~~~---~---~g~----- 247 (423)
|++++..++|+||||+|||++|..+|... + .++++++...- ... + .|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45566669999999999999999998752 2 46677765432 110 0 110
Q ss_pred -----------hH---HHHHHHHHHHHh-CCCeEEEECCchhhhc
Q 014525 248 -----------GA---KLVRDAFQLAKE-KSPCIIFIDEIDAIGT 277 (423)
Q Consensus 248 -----------~~---~~~~~~~~~a~~-~~~~vl~iDEid~l~~ 277 (423)
.+ ..+..+...+.. ..+.+|+||.+..+..
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 01 112233344455 6689999999999874
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.69 E-value=1.8e-05 Score=69.47 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=29.6
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
+..+..++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34556799999999999999999999998877653
No 144
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.68 E-value=0.00013 Score=65.94 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=42.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccch-------hhhhhhhch-----HHHHHHHHHHHHh----CCCe
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ-------LVQMFIGDG-----AKLVRDAFQLAKE----KSPC 265 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~-------l~~~~~g~~-----~~~~~~~~~~a~~----~~~~ 265 (423)
.-++++||+|+|||+++..++..+ +..++.+.... +.+. .|.. ......+++.+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 347889999999999998888766 44555553211 1111 1110 0011234555544 3578
Q ss_pred EEEECCchhh
Q 014525 266 IIFIDEIDAI 275 (423)
Q Consensus 266 vl~iDEid~l 275 (423)
+|+|||++.+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999986
No 145
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.66 E-value=3.7e-05 Score=87.70 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=53.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh----hhhhc--------hHHHHHHHHHHH----H
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ----MFIGD--------GAKLVRDAFQLA----K 260 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~----~~~g~--------~~~~~~~~~~~a----~ 260 (423)
|+.++..++|+||||+|||+||..+|..+ +.++++++..+... ...|. .+..+..++..+ +
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 47777889999999999999999998875 45777777654331 11220 000122333333 3
Q ss_pred hCCCeEEEECCchhhhc
Q 014525 261 EKSPCIIFIDEIDAIGT 277 (423)
Q Consensus 261 ~~~~~vl~iDEid~l~~ 277 (423)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
No 146
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.63 E-value=0.00016 Score=66.59 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=32.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
..|..++|.||||+|||++++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345569999999999999999999999876777777655
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.63 E-value=0.00013 Score=68.67 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=30.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
.|..++|.||||+||||+++.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34568999999999999999999998656677776444
No 148
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.60 E-value=4e-05 Score=66.63 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=28.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.+..++|+|+||+|||++++.+++.++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345799999999999999999999998877643
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.55 E-value=3.7e-05 Score=67.39 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=33.2
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
+.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455679999999999999999999987777788876654
No 150
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.55 E-value=0.00037 Score=63.42 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHH----hCCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQ----TNATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~----l~~~~i~v~~ 237 (423)
|++++.-++|+|+||+|||++|..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5566677999999999999999887643 2566666653
No 151
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.53 E-value=5.1e-05 Score=65.06 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=27.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.++|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876554
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.52 E-value=4.5e-05 Score=66.74 Aligned_cols=31 Identities=42% Similarity=0.574 Sum_probs=26.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH-hCCcEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ-TNATFLK 234 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~-l~~~~i~ 234 (423)
+..++|+|+||||||++++.+++. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 446999999999999999999999 6766653
No 153
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.52 E-value=5.3e-05 Score=66.03 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=27.2
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++|+|+||+|||++|+.|++.++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 599999999999999999999999887643
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.51 E-value=6.5e-05 Score=64.62 Aligned_cols=30 Identities=37% Similarity=0.657 Sum_probs=26.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
+..+.|+||+|+||||+++.++..++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999987654
No 155
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.51 E-value=0.00031 Score=61.84 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.2
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999876
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.50 E-value=0.00052 Score=69.52 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=51.7
Q ss_pred eEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--CCChhhhcCCCcceEEEcCCCC
Q 014525 265 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD--ILDPALMRSGRLDRKIEFPHPT 342 (423)
Q Consensus 265 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~~~~Rf~~~i~~~~p~ 342 (423)
-+|+|||+..+... ....+...+..+..... .-++.+|++|.+|. .++..++. .|...|.|...+
T Consensus 299 ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gR----a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 299 IVVLVDEFADLMMT-------VGKKVEELIARLAQKAR----AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp EEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCG----GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred EEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhh----hCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 38999999887531 11234444444544432 23677888888876 58888877 788999999999
Q ss_pred HHHHHHHHH
Q 014525 343 EEARARILQ 351 (423)
Q Consensus 343 ~~~r~~Il~ 351 (423)
..+...|+.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 988888875
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.50 E-value=5.3e-05 Score=65.54 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=26.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
.++|.||||+|||++++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 158
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.47 E-value=0.00012 Score=68.48 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
|+.++..++|+||+|+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45566679999999999999999998754
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.46 E-value=0.00044 Score=69.43 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~ 237 (423)
|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67777779999999999999999998754 456777664
No 160
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.45 E-value=0.00017 Score=74.63 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=25.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~ 236 (423)
+.++|+||||||||+++.+++..+ +.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 578999999999999999998865 55555443
No 161
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.45 E-value=0.00022 Score=66.06 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH---hCCcEEEEccchhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ---TNATFLKLAGPQLV 241 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~---l~~~~i~v~~~~l~ 241 (423)
+..++|.|+||+|||++|+.++.. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 346899999999999999999998 67888767765544
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.44 E-value=0.0011 Score=58.47 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEE---ccc------hhhhhhh-------------h-c---hHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKL---AGP------QLVQMFI-------------G-D---GAKLVRDA 255 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v---~~~------~l~~~~~-------------g-~---~~~~~~~~ 255 (423)
..+++|+++|.|||++|-.+|-.. |..+..+ .+. .++..+. . . ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998765 5555555 221 2333320 0 0 01222333
Q ss_pred HHHHH----hCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCChhhhcCCC
Q 014525 256 FQLAK----EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGR 331 (423)
Q Consensus 256 ~~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~~~R 331 (423)
+..++ ...+.+|+|||+-....-.. -.. ..+++++.. ...+.-||.|+|.+ +++|+. .
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~----l~~----~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY----LPL----EEVISALNA-----RPGHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS----SCH----HHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC----CCH----HHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--h
Confidence 44333 35689999999965321110 011 234455542 23456788998854 667766 5
Q ss_pred cceEEEcC
Q 014525 332 LDRKIEFP 339 (423)
Q Consensus 332 f~~~i~~~ 339 (423)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 66665554
No 163
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.42 E-value=7.1e-05 Score=64.20 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
..++|.|+||||||++++.||+.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999988743
No 164
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.41 E-value=8.5e-05 Score=65.77 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=27.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
..++|.|+||+|||++|+.|++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4589999999999999999999999876544
No 165
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.41 E-value=7.7e-05 Score=65.46 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
++..++|.|+||+||||+++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 445799999999999999999999998876543
No 166
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.40 E-value=0.00027 Score=70.74 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~ 237 (423)
|+.++.-++|.|+||+|||++|..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67777779999999999999999988754 456777764
No 167
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.39 E-value=9.2e-05 Score=68.39 Aligned_cols=32 Identities=38% Similarity=0.426 Sum_probs=28.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
.++|.||||+|||++|+.||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876664
No 168
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.39 E-value=0.00036 Score=66.52 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=30.7
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|+.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 67777779999999999999999998764 456666654
No 169
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.38 E-value=8.6e-05 Score=66.78 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=28.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
++..++|.|+||+||||+++.|++.++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 345699999999999999999999999766543
No 170
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.38 E-value=0.00012 Score=64.93 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=27.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
+..++|.|++|+||||+++.|++.++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998776643
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.38 E-value=0.00011 Score=68.31 Aligned_cols=72 Identities=28% Similarity=0.470 Sum_probs=42.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC----CcEEEEccc-hhh---------hhhhhchHHHHHHHHHHHHhCCCeEE
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGP-QLV---------QMFIGDGAKLVRDAFQLAKEKSPCII 267 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~~-~l~---------~~~~g~~~~~~~~~~~~a~~~~~~vl 267 (423)
.++..++|.||+|+||||++++++..+. ..++....+ ++. ...+|.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 3555689999999999999999998652 223222110 010 00011111122344555555678999
Q ss_pred EECCch
Q 014525 268 FIDEID 273 (423)
Q Consensus 268 ~iDEid 273 (423)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 172
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.36 E-value=7.7e-05 Score=65.25 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=29.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
|..++|.|+||+||||+|+.+++.++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 346899999999999999999999987664 444443
No 173
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.36 E-value=0.00088 Score=66.59 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh-------h-------------hhhchHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ-------M-------------FIGDGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~-------~-------------~~g~~~~~~~~~~~~a 259 (423)
+|..+++.|++|+||||++..+|..+ +..+..+++..+.. . ............+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999876 55666666542211 0 0112333445666777
Q ss_pred HhCCCeEEEECCchhh
Q 014525 260 KEKSPCIIFIDEIDAI 275 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l 275 (423)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999987554
No 174
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.36 E-value=0.00011 Score=63.21 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=26.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
..++|.|+||+|||++++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987664
No 175
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.35 E-value=8.3e-05 Score=67.27 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.+..++|.||||+||||+++.|++.++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 446799999999999999999999998766543
No 176
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.35 E-value=0.00011 Score=66.19 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=31.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
+.++.++|.||||+||+|.|+.|++.++.+ .++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 455678999999999999999999999865 4565555543
No 177
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.35 E-value=9.3e-05 Score=63.35 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888876653
No 178
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.33 E-value=0.00079 Score=61.37 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=28.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccc-hhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGP-QLV 241 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~-~l~ 241 (423)
.++++||+|+|||.++.+++..++.+++.+... .+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 599999999999999999998887666555433 443
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.32 E-value=9.8e-05 Score=64.30 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=28.1
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
..++|.|+||+||||+++.+++.++.+++ +..++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 45899999999999999999999986654 444443
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.32 E-value=0.0019 Score=61.24 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=45.9
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh-------hhh-------------hhchHHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF-------------IGDGAKLVRDAFQL 258 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~-------~~~-------------~g~~~~~~~~~~~~ 258 (423)
.++..++|.||+|+||||++..+|..+ +..+..+++..+. ..| .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345668999999999999999999876 4455555543221 011 01112222234445
Q ss_pred HHhCCCeEEEECCchh
Q 014525 259 AKEKSPCIIFIDEIDA 274 (423)
Q Consensus 259 a~~~~~~vl~iDEid~ 274 (423)
+....|.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5567789999998754
No 181
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.31 E-value=0.00011 Score=63.79 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346899999999999999999999998877
No 182
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.29 E-value=9.8e-05 Score=64.40 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
..++|.||||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 183
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.29 E-value=0.00011 Score=64.52 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
+..++|.|+||+|||++++.+++.++.+++ +...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 456999999999999999999999986654 444443
No 184
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.28 E-value=0.00055 Score=67.99 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=95.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhhh----------hhh---------h-chHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ----------MFI---------G-DGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~~----------~~~---------g-~~~~~~~~~~~~a 259 (423)
+|..+++.||+|+||||++..+|..+ +..+..+++.-+.. ... + ............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35568999999999999999999876 55555555432110 000 0 1222233445555
Q ss_pred HhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC-CC--hhhhcCCCcceEE
Q 014525 260 KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI-LD--PALMRSGRLDRKI 336 (423)
Q Consensus 260 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~~-l~--~~l~~~~Rf~~~i 336 (423)
....+.+|+||....+... .+......+..+..... ...++++..+..... .+ ..+.....+ ..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-------~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-------EETKLLEEMKEMYDVLK----PDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-------CTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCcccc-------CCHHHHHHHHHHHHhhC----CcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 5567899999988553200 12233334444444331 234444444332221 11 111111012 233
Q ss_pred EcCCCCHH----HHHHHHHHHhhc---CCCCC------CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh---------
Q 014525 337 EFPHPTEE----ARARILQIHSRK---MNVHP------DVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--------- 394 (423)
Q Consensus 337 ~~~~p~~~----~r~~Il~~~~~~---~~~~~------~~~l~~la~~~~g~s~~dl~~l~~~A~~~A~~~--------- 394 (423)
.+...|.. ....+....-.. ++... ..+...++...-|+ +|+..++..|.......
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~k~ 321 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKMEDV 321 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC-------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34434432 223333321110 01111 22345666655443 47777776665322111
Q ss_pred CCC--CcCHHHHHHHHHHHHH
Q 014525 395 DAT--EVNHEDFNEGIIQVQA 413 (423)
Q Consensus 395 ~~~--~It~~d~~~al~~~~~ 413 (423)
... ..|.+||.+.++++..
T Consensus 322 ~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp ------CCHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHh
Confidence 112 6899999999988864
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.28 E-value=0.0001 Score=66.18 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
..++|.|+||+||||+++.|++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999776644
No 186
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.27 E-value=0.00014 Score=62.13 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=26.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
.++|.|+||+|||++++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999988764
No 187
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.27 E-value=0.00013 Score=63.67 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
+..++|.|+||+|||++++.+++.++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34689999999999999999999998766543
No 188
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.26 E-value=0.00012 Score=67.03 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
+|..|+|.||||+||||+|+.|++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999998766543
No 189
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.26 E-value=0.00013 Score=65.24 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=26.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++|.||||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998776644
No 190
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.25 E-value=0.00015 Score=65.82 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=27.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
+..++|.|+||+||||+++.|++.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34699999999999999999999999766543
No 191
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.25 E-value=0.00014 Score=65.01 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++|.||||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776644
No 192
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.25 E-value=0.0002 Score=63.40 Aligned_cols=36 Identities=31% Similarity=0.546 Sum_probs=28.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
++..+.|.||+|+||||+++.++..++..+ ++...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 455689999999999999999999987644 444443
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.24 E-value=0.00016 Score=62.42 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=26.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
+..++|.||+|+|||++++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458999999999999999999998765543
No 194
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.23 E-value=0.00011 Score=63.41 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=25.4
Q ss_pred CCceEEcCCCCChhHHHHHHHH-HhCCcEEEEccch
Q 014525 205 KGVLLYGPPGTGKTLMARACAA-QTNATFLKLAGPQ 239 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~-~l~~~~i~v~~~~ 239 (423)
..++|.||||+||||+|+.+++ .++. ..++...
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~--~~i~~d~ 36 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDD 36 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc--EEecHHH
Confidence 3589999999999999999998 4554 4444433
No 195
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.22 E-value=0.00014 Score=64.29 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=26.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
..++|.|+||+|||++++.+++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3589999999999999999999998766543
No 196
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.21 E-value=0.00015 Score=70.84 Aligned_cols=74 Identities=26% Similarity=0.458 Sum_probs=43.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhC----CcEEEEccc-hhh-hh---h-----hhchHHHHHHHHHHHHhCCCe
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGP-QLV-QM---F-----IGDGAKLVRDAFQLAKEKSPC 265 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~~-~l~-~~---~-----~g~~~~~~~~~~~~a~~~~~~ 265 (423)
.+.++..++|.||+|+||||++++++..+. ..++.+..+ ++. .. + +|.....+...+..+....|.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 344555699999999999999999998652 333333211 110 00 0 110111123344455556899
Q ss_pred EEEECCch
Q 014525 266 IIFIDEID 273 (423)
Q Consensus 266 vl~iDEid 273 (423)
+|++||+-
T Consensus 212 ~illdE~~ 219 (372)
T 2ewv_A 212 VIFVGEMR 219 (372)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999983
No 197
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.21 E-value=0.00018 Score=64.79 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=29.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.+..++|.||||+||||+++.|++.++.++ ++.++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 345799999999999999999999998755 4444443
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.21 E-value=0.00021 Score=61.95 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccch
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 239 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~ 239 (423)
++..+.|.|++|+||||+++.++..+ +.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34468899999999999999999988 88888877543
No 199
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.15 E-value=0.00025 Score=63.30 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=28.0
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
++|.||||+||+|.|+.|++.++.+. ++..+++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 78999999999999999999998765 45555543
No 200
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.15 E-value=0.00023 Score=62.03 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhC---CcEEEEccchh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQL 240 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~~l 240 (423)
.++|.|+||+||||+++.|++.++ .++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 478999999999999999999885 33555554443
No 201
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.15 E-value=0.00026 Score=62.68 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 240 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l 240 (423)
++..+.|.||+|+||||+++.++..+ +...+.++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45568899999999999999999988 544445554433
No 202
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.14 E-value=0.00017 Score=62.29 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.2
Q ss_pred CCCCceEEcCCCCChhHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARA 223 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~a 223 (423)
++.-+.|.||+|+|||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445689999999999999994
No 203
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.14 E-value=0.00048 Score=60.39 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.++|.||+|+|||+|++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998765
No 204
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.12 E-value=0.0016 Score=60.56 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.4
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455668899999999999999999854
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.10 E-value=0.00013 Score=70.27 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=26.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
+++|.||||+|||++++++|..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 59999999999999999999999877744
No 206
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.09 E-value=0.00024 Score=67.73 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=29.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
..++|+||||+|||++++.+|+.++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 368999999999999999999999988887754
No 207
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.08 E-value=0.00025 Score=63.40 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.++|.||||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998776554
No 208
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.08 E-value=0.00033 Score=61.84 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=28.6
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh-CCcEEEEc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT-NATFLKLA 236 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l-~~~~i~v~ 236 (423)
.+..+.|.|++|+||||+++.+++.+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 34568999999999999999999998 56777654
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.07 E-value=0.00038 Score=62.57 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=26.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
..+.|.||+|+||||+++.+++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999987665
No 210
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.05 E-value=0.00028 Score=64.95 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
+..+.|.||+|+|||++++.+|..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 46799999999999999999999999877654
No 211
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.05 E-value=0.00042 Score=60.43 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=27.0
Q ss_pred ceEEcCCCCChhHHHHHHHHHh---CCcEEEEc
Q 014525 207 VLLYGPPGTGKTLMARACAAQT---NATFLKLA 236 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~ 236 (423)
+.|.|++|+||||+++.+++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88887765
No 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.04 E-value=0.008 Score=65.58 Aligned_cols=43 Identities=30% Similarity=0.348 Sum_probs=35.1
Q ss_pred cCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 173 GGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 173 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+|.+..+..|.+.+... .+.+.+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 79999999999877421 12457899999999999999999863
No 213
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.03 E-value=0.00038 Score=61.27 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=25.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
.+.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.02 E-value=0.00041 Score=63.49 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=26.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
+..+.|.||+|+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999886554
No 215
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.99 E-value=0.00045 Score=62.33 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=27.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~ 241 (423)
.++|.||||+||||+++.+++.++.+++ +..+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 3789999999999999999999986554 443443
No 216
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.99 E-value=0.0027 Score=58.57 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999999864
No 217
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.98 E-value=0.0014 Score=60.81 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345568899999999999999999854
No 218
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.98 E-value=0.00033 Score=61.98 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=25.0
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.+.|.|++|+||||+++.++. ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88666543
No 219
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.97 E-value=0.0012 Score=66.09 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|+.++.-++|.|+||+|||++|-.+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67777779999999999999999988765 567777764
No 220
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.96 E-value=0.0013 Score=61.30 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345568999999999999999999854
No 221
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.96 E-value=0.0021 Score=61.65 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
|+.++.-++|.|+||+|||++|..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 66777779999999999999999998764 566666653
No 222
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.95 E-value=0.0012 Score=62.24 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=29.0
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
+.-++|.||+|+|||+||..+|+.++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3458899999999999999999999877776654
No 223
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.95 E-value=0.0025 Score=68.21 Aligned_cols=63 Identities=14% Similarity=0.047 Sum_probs=33.6
Q ss_pred CCCCcccccCchHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 165 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 165 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+...|.++.-.....+.+...-..|......--...+.....+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345677774444444444433323322111100001123346999999999999977776544
No 224
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.94 E-value=0.00058 Score=59.77 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=26.0
Q ss_pred ceEEcCCCCChhHHHHHHHHHh---CCcEEEEc
Q 014525 207 VLLYGPPGTGKTLMARACAAQT---NATFLKLA 236 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~ 236 (423)
+.|.|++|+||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88887654
No 225
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.94 E-value=0.024 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=18.7
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+.+++.+|+|+|||..+-..+-.
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHH
Confidence 357999999999999876655443
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.94 E-value=0.00052 Score=60.88 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.++..++|.||||+|||++++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999875
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.94 E-value=0.00055 Score=62.25 Aligned_cols=30 Identities=37% Similarity=0.527 Sum_probs=26.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
+..+.|.||||+|||++++.|++.++.+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 456899999999999999999999987664
No 228
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=96.93 E-value=0.0032 Score=62.01 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=15.2
Q ss_pred CCceEEcCCCCChhHHH
Q 014525 205 KGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la 221 (423)
..|+-||.+|+|||+..
T Consensus 140 ~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 140 ICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEecCCCCCCeeEe
Confidence 46999999999999986
No 229
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.93 E-value=0.0012 Score=63.88 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455568899999999999999999854
No 230
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.92 E-value=0.0039 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.4
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988776643
No 231
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.88 E-value=0.00024 Score=63.07 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT 231 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~ 231 (423)
.+..++|.|+||+||||+++.+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 34568999999999999999999987543
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.88 E-value=0.00034 Score=66.99 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 238 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~ 238 (423)
..++|.||+|+|||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4689999999999999999999999888776654
No 233
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.88 E-value=0.0005 Score=60.62 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~~ 243 (423)
.+.|+|++||||||+++.+++.++.+++ ++..+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~ 49 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHE 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHH
Confidence 4889999999999999999999887765 44455443
No 234
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.86 E-value=0.0028 Score=64.76 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=58.3
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccch----hhhh----------h-----h-------h--ch
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ----LVQM----------F-----I-------G--DG 248 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~----l~~~----------~-----~-------g--~~ 248 (423)
++.++..++|.||+|+|||+|++.++... +.+++.+...+ +... + . . ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45566779999999999999999998765 34444443221 1100 0 0 0 12
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhc
Q 014525 249 AKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLD 302 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~ 302 (423)
....+.+...+....|.+|+||=+..+.... ...+....+..++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~------~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV------SNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC------ChHHHHHHHHHHHHHHH
Confidence 2334456666777889999999666553220 11224555666666553
No 235
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.86 E-value=0.00038 Score=66.83 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=46.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccc-hhh----hh---hhhchHHHHHHHHHHHHhCCCeEEEECCc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGP-QLV----QM---FIGDGAKLVRDAFQLAKEKSPCIIFIDEI 272 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~-~l~----~~---~~g~~~~~~~~~~~~a~~~~~~vl~iDEi 272 (423)
++..++|.||+|+||||++++++.... ...+.++.. ++. .. ++.......+..+..+....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 456799999999999999999999763 234444432 110 01 11001112334556666788999999998
Q ss_pred hh
Q 014525 273 DA 274 (423)
Q Consensus 273 d~ 274 (423)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00074 Score=59.74 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=24.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNAT 231 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~ 231 (423)
..++|.|+||+||||+++.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458999999999999999999998763
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.84 E-value=0.0006 Score=59.26 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+.-+.|.||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998764
No 238
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.84 E-value=0.0012 Score=67.00 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=30.8
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEcc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 237 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~ 237 (423)
|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 66676779999999999999999998765 456777764
No 239
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.84 E-value=0.0048 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=17.9
Q ss_pred CCCceEEcCCCCChhHHH-HHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA-RACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la-~ala~~ 227 (423)
.+.+++.+|+|+|||..+ -.+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 357999999999999874 334443
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.84 E-value=0.0018 Score=61.27 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=27.3
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEcc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAG 237 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~ 237 (423)
-++|.||+|+|||+|+..+|+.++..++..+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 57899999999999999999998876665553
No 241
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.83 E-value=0.00029 Score=62.69 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.+..++|.|++|+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455799999999999999999999874
No 242
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.82 E-value=0.00077 Score=59.53 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=26.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.+.|.|++|+|||++++.++..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999877643
No 243
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.81 E-value=0.0021 Score=60.89 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456679999999999999999999855
No 244
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.81 E-value=0.0006 Score=60.38 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
.+.|.||+|+||||+++.++. +|.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 478999999999999999998 787765
No 245
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.00084 Score=58.44 Aligned_cols=37 Identities=32% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccch
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 239 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~ 239 (423)
++..++|.|+||+|||++++.++..+ +.++..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 34458899999999999999999987 34455565443
No 246
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.79 E-value=0.0008 Score=61.80 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCc--------EEEEccchhhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNAT--------FLKLAGPQLVQ 242 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~--------~i~v~~~~l~~ 242 (423)
+..|.|.|++|+|||++|+.|+..++.+ ++.+++.++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 3468899999999999999999999876 34567766643
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.78 E-value=0.00057 Score=60.13 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
+..+.|.|++|+|||++++.+++. +.+++ ++..+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHH
Confidence 345899999999999999999998 76655 4444443
No 248
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.77 E-value=0.00093 Score=61.46 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
+..+.|.||+|+||||+++.|++.++..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346889999999999999999999997655
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.76 E-value=0.011 Score=59.39 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..++|.||+|+||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 344568899999999999999999876
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.76 E-value=0.0022 Score=56.65 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=28.2
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
++..+.|.||+|+|||++++.++..+ +.+++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34458899999999999999999876 5566655443
No 251
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.0021 Score=62.29 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||.+.|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345568899999999999999999864
No 252
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.74 E-value=0.005 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=17.9
Q ss_pred CCCceEEcCCCCChhHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACA 225 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala 225 (423)
+..+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999998766554
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.73 E-value=0.00068 Score=59.83 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999999976
No 254
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.0042 Score=58.57 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=28.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGP 238 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~ 238 (423)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45578999999999999999999765 4456655543
No 255
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.72 E-value=0.0034 Score=68.04 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
++..++|+||.|+||||+.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 344589999999999999999875
No 256
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.72 E-value=0.00073 Score=60.43 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
+..+.|.|++|+||||+++.++. ++.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 34689999999999999999998 7776554
No 257
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.71 E-value=0.00051 Score=60.96 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh-CCcEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT-NATFL 233 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l-~~~~i 233 (423)
+..+.|.||+|+||||+++.++..+ +..++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 3458899999999999999999977 54443
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.71 E-value=0.00076 Score=60.09 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
++.-+.|.||+|+|||++++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999999874
No 259
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0085 Score=58.87 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=15.3
Q ss_pred CCceEEcCCCCChhHHH
Q 014525 205 KGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la 221 (423)
..|+-||.+|+|||+..
T Consensus 142 ~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 142 VAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCCceEe
Confidence 46899999999999987
No 260
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.70 E-value=0.0022 Score=62.06 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||.+.|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 345568899999999999999999854
No 261
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.70 E-value=0.00085 Score=59.80 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC----CcEEEEccchh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQL 240 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~~~l 240 (423)
.++..++|.|++|+|||++++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3445688999999999999999999764 55777775443
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.69 E-value=0.00086 Score=59.28 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=22.7
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+++.+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999998763
No 263
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.69 E-value=0.0021 Score=62.68 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.|+...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345568899999999999999999854
No 264
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.66 E-value=0.0011 Score=59.32 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=26.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
..+.|.|++|+|||++++.++..++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 468999999999999999999999977654
No 265
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.66 E-value=0.0056 Score=62.48 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=62.4
Q ss_pred CCCCCCceEEcCCCCChhHHHHHH--HHHh--CCcEEEEccchhhhh------hhhc-----------------------
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARAC--AAQT--NATFLKLAGPQLVQM------FIGD----------------------- 247 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~al--a~~l--~~~~i~v~~~~l~~~------~~g~----------------------- 247 (423)
+.++..++|.||+|+|||+|++.+ +... +...++++..+.... .+|.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 345667999999999999999994 4433 344555554321000 0000
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEECCchhhhccCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q 014525 248 -------GAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD 320 (423)
Q Consensus 248 -------~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~~ 320 (423)
................|.+|+||++-.+.+. ..-++.....+..++..+.. .++.||.++...+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~ 186 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIE 186 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCC
Confidence 0112223334444566789999999775432 11244555667777766532 1334555655544
Q ss_pred C
Q 014525 321 I 321 (423)
Q Consensus 321 ~ 321 (423)
.
T Consensus 187 ~ 187 (525)
T 1tf7_A 187 E 187 (525)
T ss_dssp S
T ss_pred C
Confidence 3
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.65 E-value=0.00099 Score=58.69 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
++..+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999999863
No 267
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.63 E-value=0.0023 Score=62.62 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45889999999999999999999987766554
No 268
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.62 E-value=0.0014 Score=59.44 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
++..+.|.|++|+|||++++.++..++.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34568999999999999999999999977653
No 269
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.61 E-value=0.0013 Score=57.84 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCceEEcCCCCChh-HHHHHHHHHh--CCcEEEEcc
Q 014525 205 KGVLLYGPPGTGKT-LMARACAAQT--NATFLKLAG 237 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT-~la~ala~~l--~~~~i~v~~ 237 (423)
.-.++|||.|+||| +|.+++.+.. +..++.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34789999999999 8999988765 556666653
No 270
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.60 E-value=0.001 Score=63.86 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
..++|.||+|+|||++|+.||..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 35889999999999999999999986665544
No 271
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.57 E-value=0.0053 Score=63.84 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999988876654
No 272
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.56 E-value=0.00091 Score=58.99 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=26.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
+++++|.||||+|||++|..+++... .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 45799999999999999999998866 555444
No 273
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.55 E-value=0.014 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=17.9
Q ss_pred CCCceEEcCCCCChhHHH-HHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA-RACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la-~ala~~ 227 (423)
.+.+++.+|+|+|||..+ -.+...
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHH
Confidence 367999999999999773 344443
No 274
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.51 E-value=0.0087 Score=62.70 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=22.1
Q ss_pred CceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
-.||.||||||||+++-.+...+ +..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 47999999999997665544433 4555544443
No 275
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.51 E-value=0.0014 Score=58.86 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.5
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.|+...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455678999999999999999999976
No 276
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.51 E-value=0.0016 Score=56.74 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=25.0
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccch
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~ 239 (423)
.+.|.||+|+||||+++.++...+. .+.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4789999999999999999986643 24444433
No 277
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.50 E-value=0.0014 Score=57.21 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+.+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998763
No 278
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.49 E-value=0.0011 Score=61.98 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccchh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l 240 (423)
..|.|+|++|+||||+|+.++ .++.+++ ++..+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 358999999999999999999 5777654 44444
No 279
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.47 E-value=0.0048 Score=58.82 Aligned_cols=36 Identities=28% Similarity=0.180 Sum_probs=28.5
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
.++..++|+||+|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455679999999999999999999876 455555554
No 280
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.47 E-value=0.0015 Score=55.62 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+.++..+.|.||.|+|||+|++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33455568999999999999999999987
No 281
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.45 E-value=0.0088 Score=59.41 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=28.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
++..++|+|++|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999999876 4556666654
No 282
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.0025 Score=63.17 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFL 233 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i 233 (423)
+.-++|+|+||+||||+|+.++..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 455889999999999999999998876544
No 283
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.43 E-value=0.011 Score=53.15 Aligned_cols=19 Identities=42% Similarity=0.382 Sum_probs=15.9
Q ss_pred CCCceEEcCCCCChhHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ 222 (423)
.+.+++.+|+|+|||..+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4679999999999998643
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.43 E-value=0.0023 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+++-+.|.||+|+|||+|+++|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.41 E-value=0.0012 Score=58.68 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
++..+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344688999999999999999999887
No 286
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.40 E-value=0.0052 Score=53.99 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=39.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccc--------hhhhhhhhch-----HHHHHHHHHHHHhCCCeEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGP--------QLVQMFIGDG-----AKLVRDAFQLAKEKSPCIIF 268 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~--------~l~~~~~g~~-----~~~~~~~~~~a~~~~~~vl~ 268 (423)
.-.+++||+|+|||+.+-.++..+ +..++.+... .+.+. .|.. .....++++.+. ..+.+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~-~~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFE-EDTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCC-TTCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHh-ccCCEEE
Confidence 357889999999999888887765 4444444311 01111 1100 000113444433 2468999
Q ss_pred ECCchhh
Q 014525 269 IDEIDAI 275 (423)
Q Consensus 269 iDEid~l 275 (423)
|||++.+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999986
No 287
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.39 E-value=0.0086 Score=65.06 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.3
Q ss_pred CCceEEcCCCCChhHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~ 226 (423)
..++|+||.|+|||++.+.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4488999999999999999954
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.39 E-value=0.0016 Score=57.86 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.5
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
++..+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444688999999999999999999874
No 289
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.38 E-value=0.0014 Score=66.67 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccch-hhh---hh--------hhchHHHHHHHHHHHHhCCCeEEE
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGPQ-LVQ---MF--------IGDGAKLVRDAFQLAKEKSPCIIF 268 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~~-l~~---~~--------~g~~~~~~~~~~~~a~~~~~~vl~ 268 (423)
.+.+++|.||+|+||||++++++..+. ...+.+.... +.- .+ .+.....+..+...+.+..|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 455799999999999999999998773 3455554322 210 00 011111122344455567889999
Q ss_pred ECCch
Q 014525 269 IDEID 273 (423)
Q Consensus 269 iDEid 273 (423)
+.|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99984
No 290
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.37 E-value=0.0014 Score=61.61 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=26.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh-CCcEEEEccchh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT-NATFLKLAGPQL 240 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l-~~~~i~v~~~~l 240 (423)
..++|.|+||+||||+++.+++.+ +.. .++...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~ 37 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDY 37 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHH
Confidence 358999999999999999999974 544 4444443
No 291
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.37 E-value=0.012 Score=52.76 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.9
Q ss_pred CCCceEEcCCCCChhHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ 222 (423)
.+.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999997643
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.35 E-value=0.002 Score=60.94 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHhCCcE
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQTNATF 232 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l~~~~ 232 (423)
.++++..+.|+||+|+|||+|++.|+..+...+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 456667799999999999999999999874443
No 293
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.35 E-value=0.0027 Score=59.63 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEc
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLA 236 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~ 236 (423)
|+.++.-++|.||||+|||+|++.++..+ +.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56677779999999999999999998865 33555554
No 294
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.35 E-value=0.011 Score=61.22 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=24.3
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++++..+.|.||+|+|||||++.++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4566679999999999999999999865
No 295
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.35 E-value=0.025 Score=49.48 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCCceEEcCCCCChhHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ 222 (423)
.+++++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999997554
No 296
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.33 E-value=0.025 Score=55.02 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh-----CCcEEEEccc-------hhhhhh--------hhchHH-HHH---HHH--
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT-----NATFLKLAGP-------QLVQMF--------IGDGAK-LVR---DAF-- 256 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l-----~~~~i~v~~~-------~l~~~~--------~g~~~~-~~~---~~~-- 256 (423)
++..++|.||+|+|||+|++.|++.. +..++.+-+. ++.... ..++.. .+. ..+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~ 252 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEK 252 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45579999999999999999998865 3334444222 111110 011111 110 011
Q ss_pred -HHH-HhCCCeEEEECCchhhhccC---------CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q 014525 257 -QLA-KEKSPCIIFIDEIDAIGTKR---------FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRA 319 (423)
Q Consensus 257 -~~a-~~~~~~vl~iDEid~l~~~r---------~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~v~vI~ttn~~ 319 (423)
+.. ......+|++|++.+++... -.+ .+.++.+...+..++.....+...+.+..|.|.-.+
T Consensus 253 AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~ 325 (422)
T 3ice_A 253 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 325 (422)
T ss_dssp HHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCS
T ss_pred HHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEec
Confidence 111 23455788899999876311 111 233455555556666554333345566677666543
No 297
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.31 E-value=0.015 Score=61.61 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=18.6
Q ss_pred CCCCCceEEcCCCCChhHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARA 223 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~a 223 (423)
....++++.||+|+|||+.+-.
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 4467899999999999999843
No 298
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.30 E-value=0.0071 Score=61.61 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=28.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC---CcEEEEccchhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLV 241 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~~l~ 241 (423)
.-|+|.|.||+|||++|+.+++.++ .....++..++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 4589999999999999999999884 444556655443
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.29 E-value=0.0089 Score=56.33 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=45.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh----h---hhhh---------h----chHHHHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL----V---QMFI---------G----DGAKLVRDAFQLAK 260 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l----~---~~~~---------g----~~~~~~~~~~~~a~ 260 (423)
+..+++.|++|+|||+++..+|..+ +..+..+++.-. . ..+. + .....+......++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568889999999999999999876 556666655311 0 0000 0 12222345566666
Q ss_pred hCCCeEEEECCchh
Q 014525 261 EKSPCIIFIDEIDA 274 (423)
Q Consensus 261 ~~~~~vl~iDEid~ 274 (423)
...+.+++||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 56778999997544
No 300
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.28 E-value=0.0048 Score=59.00 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999999876
No 301
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.28 E-value=0.0025 Score=56.50 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=27.0
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
.|.|.||+|||||++++.+|+.++.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999873
No 302
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.27 E-value=0.012 Score=60.98 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++++..+.|.||+|+|||||++.++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3566679999999999999999998865
No 303
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.27 E-value=0.009 Score=57.08 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.5
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999886654443
No 304
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.27 E-value=0.0021 Score=56.98 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3555688999999999999999999874
No 305
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.26 E-value=0.0022 Score=57.65 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+++..+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455688999999999999999998764
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.22 E-value=0.0077 Score=59.85 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=47.0
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh----CCcEEEEccchhhhh-------h---hh----------chHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT----NATFLKLAGPQLVQM-------F---IG----------DGAKLVRDAFQL 258 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~~~l~~~-------~---~g----------~~~~~~~~~~~~ 258 (423)
+++.+++.|++|+||||++-.+|..+ +..+..+++.-+... + .| .........+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998765 566777766532110 0 00 112223455666
Q ss_pred HHhCCCeEEEECCchh
Q 014525 259 AKEKSPCIIFIDEIDA 274 (423)
Q Consensus 259 a~~~~~~vl~iDEid~ 274 (423)
+....+.+++||=.-.
T Consensus 179 ~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHTTCSEEEEECCCC
T ss_pred HHhCCCCEEEEECCCc
Confidence 6656678999987543
No 307
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.21 E-value=0.011 Score=61.14 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++++..+.|.||+|+|||||++.++...
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3456679999999999999999998865
No 308
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0032 Score=59.53 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455568999999999999999999976
No 309
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.16 E-value=0.0071 Score=61.21 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=27.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
++..|+|+|+||+||||++..+|..+ +..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34569999999999999999999776 556666655
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.15 E-value=0.034 Score=52.20 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=44.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh-------hhhh--------h----h-chHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL-------VQMF--------I----G-DGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l-------~~~~--------~----g-~~~~~~~~~~~~a 259 (423)
++..+.+.|++|+|||+++..+|..+ +..+..+++.-. +..+ + + ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568889999999999999999876 455555554211 0000 0 0 1112224455555
Q ss_pred HhCCCeEEEECCchh
Q 014525 260 KEKSPCIIFIDEIDA 274 (423)
Q Consensus 260 ~~~~~~vl~iDEid~ 274 (423)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 545678999998744
No 311
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.15 E-value=0.018 Score=61.65 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+..++|+||.|+|||++.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345889999999999999999874
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.11 E-value=0.017 Score=57.18 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=44.6
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchhh-------hhh---h-------h---chHHHHHHHHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV-------QMF---I-------G---DGAKLVRDAFQLA 259 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l~-------~~~---~-------g---~~~~~~~~~~~~a 259 (423)
++..+++.||+|+||||++..+|..+ +..+..+++.-+. ..+ . + .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999876 4555555543111 010 0 0 1122224455666
Q ss_pred HhCCCeEEEECCchh
Q 014525 260 KEKSPCIIFIDEIDA 274 (423)
Q Consensus 260 ~~~~~~vl~iDEid~ 274 (423)
+...+.+++||=.-.
T Consensus 177 ~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 177 RLEARDLILVDTAGR 191 (425)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HHCCCCEEEEcCCCc
Confidence 556678999986543
No 313
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.11 E-value=0.0092 Score=53.11 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.5
Q ss_pred CCceEEcCCCCChhHHHH
Q 014525 205 KGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ 222 (423)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 314
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.09 E-value=0.019 Score=59.40 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++++..+.|.||+|+|||||++.++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456679999999999999999999854
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.08 E-value=0.0027 Score=57.91 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=24.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT 231 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~ 231 (423)
++..+-|.||+|+||||+++.++..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34458899999999999999999987643
No 316
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0036 Score=60.62 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 455568999999999999999999976
No 317
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.04 E-value=0.0039 Score=56.38 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=28.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEEEccchhhh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~l~~ 242 (423)
.+-|.||||+|||++|+.|++.++.+++ +..+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 4779999999999999999999987765 4444443
No 318
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.00 E-value=0.024 Score=51.71 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.1
Q ss_pred CCCceEEcCCCCChhHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ 222 (423)
.+.+++.+|+|+|||..+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 4679999999999998643
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.99 E-value=0.0017 Score=58.56 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=17.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHH-HHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACA-AQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala-~~l 228 (423)
.++..+.|.||+|+||||+++.++ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 765
No 320
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.97 E-value=0.0034 Score=59.00 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=26.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC---CcEEEEccchhh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN---ATFLKLAGPQLV 241 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~~~~l~ 241 (423)
.-|.|.||+|+||||+++.+++.++ ..+..+++..+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999999775 445556666553
No 321
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.96 E-value=0.0035 Score=54.42 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=28.0
Q ss_pred ceEEcCCCCChhHHHHHHHHHhCCcEEEEccch
Q 014525 207 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~~ 239 (423)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77888887654
No 322
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.96 E-value=0.0094 Score=53.87 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.9
Q ss_pred CCCceEEcCCCCChhHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ 222 (423)
.+.+++.+|+|+|||..+-
T Consensus 67 ~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TCCEEECCCSSHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3579999999999997643
No 323
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.94 E-value=0.0062 Score=57.18 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
++..+.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344588999999999999999999875
No 324
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.94 E-value=0.017 Score=61.30 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=17.2
Q ss_pred CCCCceEEcCCCCChhHHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ 222 (423)
...++++.||+|+|||+.+.
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35689999999999998873
No 325
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.93 E-value=0.0042 Score=64.39 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccch
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 239 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~ 239 (423)
+..|+|.|+||+||||+|++|++.+ +.+++.++...
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 3458999999999999999999999 88998887543
No 326
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.89 E-value=0.0042 Score=56.19 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=25.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhC--CcEEEE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTN--ATFLKL 235 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v 235 (423)
+.-+.|.||||+||||+++.+++.++ ..++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34588999999999999999999986 455443
No 327
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.87 E-value=0.015 Score=65.81 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++++..+.|.||+|+|||++++.+.+..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3566679999999999999999999876
No 328
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.83 E-value=0.03 Score=54.38 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.9
Q ss_pred CCceEEcCCCCChhHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACA 225 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala 225 (423)
+.+++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 579999999999998654433
No 329
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.83 E-value=0.099 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=18.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
.+.+++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999987644443
No 330
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.80 E-value=0.053 Score=48.49 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.6
Q ss_pred CCCceEEcCCCCChhHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la 221 (423)
++.+++.+|+|+|||..+
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999764
No 331
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.80 E-value=0.023 Score=53.47 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=16.2
Q ss_pred CCCCceEEcCCCCChhHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la 221 (423)
+++.+++.+|+|+|||...
T Consensus 130 ~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 130 PPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp SCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3578999999999999764
No 332
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.79 E-value=0.0018 Score=57.36 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.8
Q ss_pred CceEEcCCCCChhHHHHHHHHHhC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
-+.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 333
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.78 E-value=0.02 Score=51.07 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=22.9
Q ss_pred ceEEcCCCCChhHHHHHHHHHh---CCcEEEEc
Q 014525 207 VLLYGPPGTGKTLMARACAAQT---NATFLKLA 236 (423)
Q Consensus 207 vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~ 236 (423)
.+++||.|+|||+.+-.++... +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888777765 55555554
No 334
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.77 E-value=0.11 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=18.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+.+++.+|+|+|||..+-..+-.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 57999999999999887665544
No 335
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.75 E-value=0.032 Score=50.38 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=16.0
Q ss_pred CCCceEEcCCCCChhHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ 222 (423)
.+.+++.+|+|+|||..+-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3579999999999998743
No 336
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.74 E-value=0.032 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.3
Q ss_pred CCCceEEcCCCCChhHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARAC 224 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~al 224 (423)
++++++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999866543
No 337
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.019 Score=59.52 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++..+-|.||+|+|||||.+.|+..+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44568899999999999999999854
No 338
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.73 E-value=0.0059 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=22.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
...+.|.||+|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999875
No 339
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.73 E-value=0.0061 Score=54.93 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.7
Q ss_pred CceEEcCCCCChhHHHHHHHHHhCCcEEE
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTNATFLK 234 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~~~~i~ 234 (423)
.|.|.|++|||||++++.||+.++.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999998864
No 340
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.72 E-value=0.033 Score=61.20 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.0
Q ss_pred CCceEEcCCCCChhHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACA 225 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala 225 (423)
..++|+||.|+|||++.+.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568999999999999999994
No 341
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.70 E-value=0.025 Score=53.29 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=24.0
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
+++++.+|+|+|||..+-..+-..+...+.+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~ 63 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVT 63 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEe
Confidence 57999999999999877666655555555444
No 342
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.69 E-value=0.098 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+..++|+||+|+|||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3469999999999999999887754
No 343
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.65 E-value=0.022 Score=64.50 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++|+..+-|+||+|+|||++++.+.+..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4566779999999999999999998854
No 344
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.64 E-value=0.041 Score=54.50 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=17.0
Q ss_pred CCceEEcCCCCChhHHH-HHHH
Q 014525 205 KGVLLYGPPGTGKTLMA-RACA 225 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la-~ala 225 (423)
+.+++.||+|+|||..+ -++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999875 4444
No 345
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.61 E-value=0.0057 Score=58.07 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=23.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3444588999999999999999999773
No 346
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.61 E-value=0.0061 Score=57.67 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568899999999999999999876
No 347
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.58 E-value=0.076 Score=51.70 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.3
Q ss_pred CCCceEEcCCCCChhHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la 221 (423)
.+.+++.+|+|+|||..+
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 467999999999999743
No 348
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.55 E-value=0.029 Score=51.57 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.5
Q ss_pred CCceEEcCCCCChhHHHH
Q 014525 205 KGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ 222 (423)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 579999999999998654
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.54 E-value=0.011 Score=56.37 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.4
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.-+.|.||+|+||||+++.++..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3588999999999999999999875
No 350
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.54 E-value=0.019 Score=58.62 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+-|.||+|+|||||++.|+..+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 351
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.53 E-value=0.0038 Score=56.85 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999999865
No 352
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.53 E-value=0.0048 Score=56.09 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455668999999999999999999855
No 353
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.52 E-value=0.035 Score=59.02 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.4
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..++|+||+|+|||++.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45889999999999999999874
No 354
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.50 E-value=0.0053 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..++||.|+||+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999999884
No 355
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.026 Score=57.68 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||+++|+..+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999864
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.48 E-value=0.011 Score=55.99 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+..+.|.||+|+||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999765
No 357
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.47 E-value=0.013 Score=57.80 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
...++|.||+|+||||++++++..+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34589999999999999999999874
No 358
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.47 E-value=0.026 Score=56.65 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhC---CcEEEEc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTN---ATFLKLA 236 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v~ 236 (423)
+..|+|.|.||+|||++++.+++.++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 34689999999999999999999874 3444444
No 359
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.46 E-value=0.064 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=16.9
Q ss_pred CCCceEEcCCCCChhHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARAC 224 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~al 224 (423)
.+.+++.+|+|+|||..+-..
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHH
Confidence 357999999999999766543
No 360
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.43 E-value=0.027 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
...+.|.|+||+|||+++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998876
No 361
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.43 E-value=0.021 Score=51.60 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.4
Q ss_pred CCCceEEcCCCCChhHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la 221 (423)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 357999999999999864
No 362
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.41 E-value=0.0045 Score=55.80 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999999865
No 363
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.37 E-value=0.03 Score=50.86 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.3
Q ss_pred CCceEEcCCCCChhHHHH
Q 014525 205 KGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ 222 (423)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999997543
No 364
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.37 E-value=0.056 Score=54.08 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=16.2
Q ss_pred CCCCceEEcCCCCChhHHH
Q 014525 203 PPKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la 221 (423)
+++.+++.||+|+|||..+
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 3478999999999999774
No 365
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.37 E-value=0.031 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||||+|||+|.++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344458899999999999999999865
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.36 E-value=0.009 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999876
No 367
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.32 E-value=0.0079 Score=61.96 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC----CcEEEEccch
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQ 239 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~~~ 239 (423)
..|+|.|+||+|||++|++|++.++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 4588999999999999999999985 6788777544
No 368
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.30 E-value=0.006 Score=54.61 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355568899999999999999999865
No 369
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.30 E-value=0.045 Score=53.22 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.4
Q ss_pred CCCceEEcCCCCChhHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARA 223 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~a 223 (423)
.+.+++.+|+|+|||..+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 45699999999999987533
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.30 E-value=0.0094 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+-.+|+||+|+|||+++++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999999999998765
No 371
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.27 E-value=0.0066 Score=56.13 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999999865
No 372
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.25 E-value=0.006 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.+ ..+.|.||+|+|||||++.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 678899999999999999999865
No 373
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.25 E-value=0.019 Score=62.44 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.8
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
.++..+.|.||+|+|||||++.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3555689999999999999999994
No 374
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.23 E-value=0.007 Score=53.90 Aligned_cols=24 Identities=46% Similarity=0.541 Sum_probs=21.4
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+..+.|.||+|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999975
No 375
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.20 E-value=0.0085 Score=55.54 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++..+.|.||+|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45556889999999999999999985
No 376
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.16 E-value=0.0064 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345568899999999999999999854
No 377
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.13 E-value=0.0077 Score=55.72 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 455568899999999999999999865
No 378
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.13 E-value=0.0076 Score=55.65 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455678999999999999999998854
No 379
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.13 E-value=0.0053 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.9
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999998854
No 380
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.12 E-value=0.011 Score=53.61 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=22.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.-+.|.|++|+||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999984
No 381
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.12 E-value=0.0066 Score=55.43 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568999999999999999999854
No 382
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.044 Score=60.92 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=18.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~ 226 (423)
.+.+|++||+|+|||..+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 46899999999999988755444
No 383
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.08 E-value=0.008 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++..+.|.||+|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556889999999999999999985
No 384
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.07 E-value=0.019 Score=60.67 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=16.9
Q ss_pred CCCceEEcCCCCChhHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ 222 (423)
.+++++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4689999999999999884
No 385
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.05 E-value=0.0071 Score=54.70 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.4
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355668899999999999999999865
No 386
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.04 E-value=0.007 Score=55.41 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355568999999999999999998864
No 387
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.00 E-value=0.019 Score=59.78 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.2
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999887776543
No 388
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.00 E-value=0.0073 Score=55.02 Aligned_cols=27 Identities=33% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999864
No 389
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.00 E-value=0.0097 Score=57.69 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=44.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhC--CcEEEEccc-hhh----hh---hhh-c-------hHHHHHHHHHHHHhCC
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTN--ATFLKLAGP-QLV----QM---FIG-D-------GAKLVRDAFQLAKEKS 263 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~--~~~i~v~~~-~l~----~~---~~g-~-------~~~~~~~~~~~a~~~~ 263 (423)
.++..++|.||+|+||||++++++.... ...+.++.. ++. .. ++. . ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3556899999999999999999999763 234444421 110 00 110 0 1112334455555667
Q ss_pred CeEEEECCch
Q 014525 264 PCIIFIDEID 273 (423)
Q Consensus 264 ~~vl~iDEid 273 (423)
|.+++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8899999875
No 390
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.99 E-value=0.0087 Score=55.42 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999999854
No 391
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.99 E-value=0.022 Score=51.01 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=25.2
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcE
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATF 232 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~ 232 (423)
+.-+.|.|++|+|||++++.+++.++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688999999999999999999998643
No 392
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.98 E-value=0.047 Score=53.03 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=16.0
Q ss_pred CCCceEEcCCCCChhHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la 221 (423)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 468999999999999875
No 393
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.97 E-value=0.0067 Score=62.13 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=30.6
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhC----CcEEEEccchhh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTN----ATFLKLAGPQLV 241 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~----~~~i~v~~~~l~ 241 (423)
++..+.|.|++|+||||++++|+..++ ..+..++...+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 445689999999999999999999884 345567766553
No 394
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.96 E-value=0.0077 Score=55.21 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355568899999999999999999865
No 395
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.95 E-value=0.0049 Score=56.80 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
+.-|.|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34588999999999999999999984
No 396
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.94 E-value=0.0086 Score=58.22 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||.+.|+...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345568899999999999999999854
No 397
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.93 E-value=0.2 Score=45.03 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=20.6
Q ss_pred CceEEcCCCCChhHHHHHHHHHh---CCcEEEEc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT---NATFLKLA 236 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~ 236 (423)
-.+++||.|+|||+.+-..+... +..++.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37789999999997665555443 44444443
No 398
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.93 E-value=0.02 Score=51.08 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC---CcEEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN---ATFLKL 235 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~---~~~i~v 235 (423)
.-|.|.|++|+||||+++.+++.+. .+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3578899999999999999999873 445444
No 399
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.90 E-value=0.13 Score=45.71 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=19.9
Q ss_pred CceEEcCCCCChhH-HHHHHHHHh--CCcEEEE
Q 014525 206 GVLLYGPPGTGKTL-MARACAAQT--NATFLKL 235 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~-la~ala~~l--~~~~i~v 235 (423)
-.+++||.|+|||+ |.+.+.+.. +..++.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 36889999999999 556654433 4444444
No 400
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.89 E-value=0.0076 Score=58.21 Aligned_cols=27 Identities=41% Similarity=0.518 Sum_probs=23.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||.+.|+...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999864
No 401
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.87 E-value=0.25 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=18.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+.+++.+|+|+|||..+-..+-.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 57999999999999887665543
No 402
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.85 E-value=0.084 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.8
Q ss_pred CCceEEcCCCCChhHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~ 226 (423)
+++++.+|+|+|||..+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 5799999999999998776654
No 403
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.84 E-value=0.2 Score=51.10 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCCceEEcCCCCChhHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la 221 (423)
.+.+++.+|+|+|||..+
T Consensus 111 ~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 457999999999999753
No 404
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.83 E-value=0.1 Score=51.36 Aligned_cols=32 Identities=38% Similarity=0.432 Sum_probs=24.4
Q ss_pred CceEEcCCCCChhHHHHHHHHHh----CCcEEEEcc
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT----NATFLKLAG 237 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l----~~~~i~v~~ 237 (423)
++++.+|+|+|||..+-.++... +..++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999988776654 455555544
No 405
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.83 E-value=0.026 Score=56.39 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEccc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGP 238 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~~~ 238 (423)
+.+++.||+|+|||..+-.++...+.+.+.+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888777666655443
No 406
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.82 E-value=0.0088 Score=55.83 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345568899999999999999999865
No 407
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.81 E-value=0.0087 Score=54.99 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999865
No 408
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.80 E-value=0.065 Score=60.54 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 201 VRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 201 ~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
++++..+.|.||+|+|||||++.++...
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566679999999999999999998865
No 409
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.77 E-value=0.015 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=18.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.-|.|.||+|+||||+++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 447889999999999999999987
No 410
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.77 E-value=0.016 Score=51.53 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=26.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
..+-|+|..|||||++++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3588999999999999999998 888876444
No 411
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.75 E-value=0.013 Score=54.41 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.9
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 412
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.03 Score=48.22 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+...+++.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33469999999999999999998753
No 413
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.71 E-value=0.054 Score=56.91 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.0
Q ss_pred CCCCCceEEcCCCCChhHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARAC 224 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~al 224 (423)
.++..+.|.||+|+|||||++.+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTT
T ss_pred cCCCEEEEEeeCCCCHHHHHHHH
Confidence 34556889999999999999754
No 414
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.71 E-value=0.039 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
-.|+|.|.||+|||+|+.++...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 35999999999999999999763
No 415
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.70 E-value=0.009 Score=58.12 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||.+.|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 345568899999999999999999865
No 416
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.67 E-value=0.0072 Score=58.23 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.2
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.|+...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 445568899999999999999999854
No 417
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.67 E-value=0.075 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.4
Q ss_pred CCCceEEcCCCCChhHHHH-HHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMAR-ACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~-ala~~ 227 (423)
++.+++.+|+|+|||..+- .+...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999998743 34444
No 418
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.64 E-value=0.017 Score=58.45 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=23.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNA 230 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~ 230 (423)
..++|.|.+|+||||++++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999974
No 419
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.64 E-value=0.016 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+.|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 420
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.62 E-value=0.058 Score=55.18 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEccchh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAGPQL 240 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~~~l 240 (423)
+..++|+|++|+|||++++.+++.+ +.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3458899999999999999999987 456677776544
No 421
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.62 E-value=0.065 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+..+.|.|+||+|||+++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999998765
No 422
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.61 E-value=0.016 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.8
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.015 Score=58.20 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCCCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 200 GVRPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 200 g~~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+.++..+.|.||+|+|||||++.|+...
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34566679999999999999999999865
No 424
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.55 E-value=0.011 Score=57.72 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++..+.|.||+|+|||||++.|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45566999999999999999999974
No 425
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.54 E-value=0.12 Score=49.65 Aligned_cols=18 Identities=39% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCceEEcCCCCChhHHHH
Q 014525 205 KGVLLYGPPGTGKTLMAR 222 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ 222 (423)
+.+++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998743
No 426
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.54 E-value=0.02 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
...++|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998854
No 427
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.51 E-value=0.033 Score=54.36 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34589999999999999999998764 455555553
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.0089 Score=51.47 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.7
Q ss_pred CceEEcCCCCChhHHHHHHHHHhC
Q 014525 206 GVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
.+.|.||+|+|||||++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999863
No 429
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.48 E-value=0.013 Score=54.95 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.4
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||++.++..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455568899999999999999999865
No 430
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.43 E-value=0.028 Score=55.67 Aligned_cols=23 Identities=39% Similarity=0.380 Sum_probs=19.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+-.++.|+||||||+++..++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 34789999999999999887753
No 431
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.42 E-value=0.25 Score=50.69 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCCceEEcCCCCChhHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la 221 (423)
.+.+++.+|+|+|||..+
T Consensus 60 ~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEcCCCcHHHHHH
Confidence 457999999999999853
No 432
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.42 E-value=0.032 Score=59.82 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.2
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999887776643
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.40 E-value=0.021 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.-+.|.|++|+|||++++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999987
No 434
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.40 E-value=0.021 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 435
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.38 E-value=0.027 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..+.|.|+||+|||+|.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 436
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.31 E-value=0.018 Score=55.85 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNAT 231 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~ 231 (423)
...+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987543
No 437
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.30 E-value=0.0077 Score=58.17 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.++..+.|.||+|+|||||.+.|+...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999854
No 438
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.27 E-value=0.016 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.1
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHh
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+..+.|.||+|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999864
No 439
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.24 E-value=0.023 Score=47.48 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.3
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.20 E-value=0.021 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+-.+|+||.|+|||++..||+-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998655
No 441
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.16 E-value=0.024 Score=55.96 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.6
Q ss_pred CCCCC--ceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKG--VLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~--vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++.. +.|.||+|+|||||+++|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34445 789999999999999999875
No 442
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.15 E-value=0.14 Score=50.50 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCceEEcCCCCChhHHH
Q 014525 204 PKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la 221 (423)
.+.+++.+|+|+|||...
T Consensus 93 g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCchHHH
Confidence 467999999999999843
No 443
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.15 E-value=0.18 Score=53.77 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHh---CCcEEEEcc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQT---NATFLKLAG 237 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l---~~~~i~v~~ 237 (423)
.+.++|+.||+|+|||..+-..+-.. +...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34589999999999998876544332 444444443
No 444
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.15 E-value=0.037 Score=55.03 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCC
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNA 230 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~ 230 (423)
++..+.|.||+|+|||+|++.|++....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4456899999999999999999998753
No 445
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.13 E-value=0.025 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.1
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.13 E-value=0.023 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+.|.|++|+|||+|.++++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 447
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.09 E-value=0.02 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.5
Q ss_pred CceEEcCCCCChhHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~ 226 (423)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 448
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.08 E-value=0.024 Score=47.01 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.2
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 449
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.07 E-value=0.068 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..+++.|++|+|||+|+.++...
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 450
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.05 E-value=0.5 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.+++.+|+|+|||..+-..+...
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 579999999999998876665443
No 451
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.05 E-value=0.026 Score=50.72 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCC
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNA 230 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~ 230 (423)
+.-|.|.|++|+|||++++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344788899999999999999997754
No 452
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.00 E-value=0.042 Score=56.68 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+++++++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 568999999999999987777654
No 453
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.97 E-value=0.027 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.0
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
...+++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999763
No 454
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.97 E-value=0.034 Score=53.51 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=24.9
Q ss_pred CCCCceEEcCCCCChhHHHHHHHHHhCCc
Q 014525 203 PPKGVLLYGPPGTGKTLMARACAAQTNAT 231 (423)
Q Consensus 203 ~~~~vLl~Gp~GtGKT~la~ala~~l~~~ 231 (423)
++..+.|.||+|+|||+|++.|++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44569999999999999999999988543
No 455
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.97 E-value=0.024 Score=50.97 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=23.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhCCcEEEE
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKL 235 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v 235 (423)
.-+.|.||.|+||||+++.++.. +..+...
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 34789999999999999999987 4444433
No 456
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.028 Score=46.97 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.1
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 457
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.95 E-value=0.028 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..+++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 458
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.94 E-value=0.029 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+++.|++|+|||+|++++....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 459
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.89 E-value=0.03 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.1
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.89 E-value=0.032 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.-|.|.|++|+||||+++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999987
No 461
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.89 E-value=0.03 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.3
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999875
No 462
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.89 E-value=0.025 Score=49.25 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..|+|.|++|+|||+|+.++...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 463
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.88 E-value=0.028 Score=47.34 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=19.8
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999753
No 464
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.87 E-value=0.034 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+..+++.|++|+|||+|++++...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999763
No 465
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.82 E-value=0.029 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 466
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.82 E-value=0.031 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..+++.|++|+|||+|++++...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 467
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.80 E-value=0.043 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
-.+++.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 468
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.77 E-value=0.18 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..|+|.|++|+|||+|..++...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 469
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.76 E-value=0.081 Score=51.20 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+.|.|+||+|||+|.++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999864
No 470
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.72 E-value=0.057 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
..+.|.|+||+|||+|.++++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999864
No 471
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.049 Score=58.40 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=17.4
Q ss_pred CceEEcCCCCChhHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~ 226 (423)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 579999999999988766554
No 472
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.69 E-value=0.033 Score=46.37 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.1
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 473
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.69 E-value=0.013 Score=51.42 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++..+.|.|++|+|||+|+++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44446999999999999999998753
No 474
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.68 E-value=0.034 Score=46.44 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.1
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 475
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.66 E-value=0.034 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.8
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 476
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.66 E-value=0.035 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
+.+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 467999999999999999999875
No 477
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.64 E-value=0.032 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.2
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++|.|++|+|||+|+++++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999873
No 478
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.63 E-value=0.13 Score=53.93 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=16.9
Q ss_pred CCCCCceEEcCCCCChhHHH
Q 014525 202 RPPKGVLLYGPPGTGKTLMA 221 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la 221 (423)
.++..+-|.||+|+|||||+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 34456899999999999996
No 479
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.62 E-value=0.033 Score=46.66 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred CceEEcCCCCChhHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~ 226 (423)
.+++.|++|+|||+|++++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 480
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.58 E-value=0.034 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 481
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.56 E-value=0.036 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.3
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.++|.|++|+|||+|+.++...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 482
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.54 E-value=0.037 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCceEEcCCCCChhHHHHHHHHHhC
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQTN 229 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l~ 229 (423)
..++|.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998763
No 483
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.52 E-value=0.028 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
..+.|.|+||+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 484
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.50 E-value=0.038 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.3
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|+.++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 485
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.50 E-value=0.33 Score=50.60 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=21.6
Q ss_pred CCCceEEcCCCCChhHHHHHHHHHhCCcEEEEc
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLA 236 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~l~~~~i~v~ 236 (423)
.+.+++.||+|+|||+.+-...-+-+...+.+.
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~ 264 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN 264 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEc
Confidence 346899999999999766544433443444443
No 486
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.18 Score=55.49 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.0
Q ss_pred CCceEEcCCCCChhHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARAC 224 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~al 224 (423)
+++++.+|+|+|||..+...
T Consensus 102 ~~vLV~apTGSGKTlva~la 121 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYA 121 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHH
Confidence 57999999999999987543
No 487
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.48 E-value=0.032 Score=46.60 Aligned_cols=21 Identities=48% Similarity=0.806 Sum_probs=19.0
Q ss_pred CceEEcCCCCChhHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAA 226 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~ 226 (423)
.+++.|++|+|||+|++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 488
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.47 E-value=0.036 Score=46.80 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.1
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|+.++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 489
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.47 E-value=0.038 Score=47.60 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCCceEEcCCCCChhHHHHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
...+++.|++|+|||+|+.++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999753
No 490
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.43 E-value=0.037 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.4
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 491
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.43 E-value=0.039 Score=46.54 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.7
Q ss_pred CceEEcCCCCChhHHHHHHHHHh
Q 014525 206 GVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~l 228 (423)
.+++.|++|+|||+|++++....
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
No 492
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.40 E-value=0.037 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
-.+++.|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 493
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.40 E-value=0.039 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.3
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.|+|.|++|+|||+|++++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 494
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=93.39 E-value=0.6 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.9
Q ss_pred CCceEEcCCCCChhHHHHHHHHHh
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQT 228 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~l 228 (423)
+.+++.+|+|+|||..+-..+...
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~ 287 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHH 287 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHH
Confidence 579999999999998877766544
No 495
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.39 E-value=0.035 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.2
Q ss_pred CCceEEcCCCCChhHHHHHHHHH
Q 014525 205 KGVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 205 ~~vLl~Gp~GtGKT~la~ala~~ 227 (423)
-.+++.|++|+|||+|++++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999999753
No 496
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.38 E-value=0.12 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=16.8
Q ss_pred CCCceEEcCCCCChhHHHHHH
Q 014525 204 PKGVLLYGPPGTGKTLMARAC 224 (423)
Q Consensus 204 ~~~vLl~Gp~GtGKT~la~al 224 (423)
.+.+++.+|+|+|||..+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 357999999999999854444
No 497
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.37 E-value=0.15 Score=47.13 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHccccChhHHhhhCCCCCCCceEEcC-CCCChhHHHHHHHHHh---CCcEEEEccc
Q 014525 176 EKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGP-PGTGKTLMARACAAQT---NATFLKLAGP 238 (423)
Q Consensus 176 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLl~Gp-~GtGKT~la~ala~~l---~~~~i~v~~~ 238 (423)
.++++.++..+..... + .+++.++++|+ +|+|||+++-.+|..+ +..++.|++.
T Consensus 63 ~Ea~r~lrt~l~~~~~--------~-~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANP--------D-SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp HHHHHHHHHHHHHSST--------T-CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhhcc--------C-CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4566666666643211 1 34567888876 8999999999998866 6778878765
No 498
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.36 E-value=0.04 Score=47.29 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.3
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.|++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 499
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.34 E-value=0.068 Score=47.11 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=31.1
Q ss_pred CCCCCceEEcCCCCChhHHHHHHHHHhCC-cEEEEccchhhh
Q 014525 202 RPPKGVLLYGPPGTGKTLMARACAAQTNA-TFLKLAGPQLVQ 242 (423)
Q Consensus 202 ~~~~~vLl~Gp~GtGKT~la~ala~~l~~-~~i~v~~~~l~~ 242 (423)
.|..-++|+|.||+||+++|+.+.+.++. .+..+.+++-+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 35567999999999999999999987753 255566665443
No 500
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.34 E-value=0.043 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.2
Q ss_pred CceEEcCCCCChhHHHHHHHHH
Q 014525 206 GVLLYGPPGTGKTLMARACAAQ 227 (423)
Q Consensus 206 ~vLl~Gp~GtGKT~la~ala~~ 227 (423)
.+++.|++|+|||+|++++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
Done!