Query 014526
Match_columns 423
No_of_seqs 343 out of 1510
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01533 4RHOD_Repeat_2 Member 99.8 5.2E-20 1.1E-24 155.7 10.2 99 270-396 10-109 (109)
2 cd01518 RHOD_YceA Member of th 99.8 1.2E-19 2.5E-24 151.3 9.3 98 271-393 3-100 (101)
3 PRK11493 sseA 3-mercaptopyruva 99.8 1.2E-19 2.6E-24 178.4 8.9 213 160-402 6-280 (281)
4 PLN02723 3-mercaptopyruvate su 99.8 1.3E-19 2.7E-24 181.8 9.2 214 160-402 23-318 (320)
5 PRK00162 glpE thiosulfate sulf 99.8 3E-19 6.4E-24 150.8 9.8 102 270-402 5-106 (108)
6 cd01527 RHOD_YgaP Member of th 99.8 3.5E-19 7.6E-24 147.5 9.9 97 271-399 3-99 (99)
7 PRK07878 molybdopterin biosynt 99.8 2.3E-19 5.1E-24 184.6 9.7 176 188-398 183-387 (392)
8 cd01523 RHOD_Lact_B Member of 99.8 5.6E-19 1.2E-23 146.7 9.9 99 272-393 1-99 (100)
9 PLN02160 thiosulfate sulfurtra 99.8 5.5E-19 1.2E-23 157.0 10.1 114 270-403 15-130 (136)
10 PRK07411 hypothetical protein; 99.8 5.1E-19 1.1E-23 182.1 11.0 178 189-399 176-386 (390)
11 cd01534 4RHOD_Repeat_3 Member 99.8 6.3E-19 1.4E-23 145.5 9.1 94 272-394 1-95 (95)
12 COG2897 SseA Rhodanese-related 99.8 5.7E-19 1.2E-23 174.8 10.0 215 159-402 11-283 (285)
13 cd01448 TST_Repeat_1 Thiosulfa 99.8 1E-18 2.2E-23 150.0 9.3 110 272-396 2-122 (122)
14 cd01519 RHOD_HSP67B2 Member of 99.8 6.3E-19 1.4E-23 147.0 7.5 105 273-394 2-106 (106)
15 cd01521 RHOD_PspE2 Member of t 99.8 2.8E-18 6.1E-23 145.7 10.6 100 270-399 8-110 (110)
16 PRK09629 bifunctional thiosulf 99.8 1.5E-18 3.2E-23 187.7 10.5 214 160-402 10-272 (610)
17 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.2E-18 2.7E-23 148.1 7.5 107 272-394 1-118 (118)
18 cd01444 GlpE_ST GlpE sulfurtra 99.8 3.6E-18 7.7E-23 139.8 8.9 92 272-393 2-95 (96)
19 cd01526 RHOD_ThiF Member of th 99.7 4.3E-18 9.3E-23 147.2 9.4 110 270-399 8-118 (122)
20 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 6.4E-18 1.4E-22 154.5 10.7 110 270-399 36-162 (162)
21 cd01528 RHOD_2 Member of the R 99.7 8E-18 1.7E-22 140.2 9.9 97 271-394 1-98 (101)
22 KOG2017 Molybdopterin synthase 99.7 1E-18 2.2E-23 174.7 5.4 183 183-395 196-419 (427)
23 PRK11493 sseA 3-mercaptopyruva 99.7 4.6E-18 9.9E-23 167.2 9.5 121 271-406 6-140 (281)
24 cd01447 Polysulfide_ST Polysul 99.7 8E-18 1.7E-22 139.2 8.6 102 272-396 1-103 (103)
25 cd01535 4RHOD_Repeat_4 Member 99.7 1E-17 2.2E-22 150.5 9.6 98 277-404 2-99 (145)
26 PF00581 Rhodanese: Rhodanese- 99.7 1.1E-17 2.4E-22 139.0 9.1 108 273-395 1-113 (113)
27 smart00450 RHOD Rhodanese Homo 99.7 8.7E-18 1.9E-22 135.2 8.1 99 284-398 2-100 (100)
28 KOG1530 Rhodanese-related sulf 99.7 7.4E-18 1.6E-22 148.4 8.1 118 265-400 18-135 (136)
29 cd01525 RHOD_Kc Member of the 99.7 1.3E-17 2.9E-22 139.0 9.1 100 272-393 1-104 (105)
30 cd01520 RHOD_YbbB Member of th 99.7 2.4E-17 5.2E-22 144.0 11.0 109 272-394 1-126 (128)
31 cd01524 RHOD_Pyr_redox Member 99.7 1.8E-17 3.9E-22 135.5 8.7 89 272-393 1-89 (90)
32 PLN02723 3-mercaptopyruvate su 99.7 2.4E-17 5.1E-22 165.5 9.9 118 271-403 23-153 (320)
33 PRK09629 bifunctional thiosulf 99.7 2.9E-17 6.3E-22 177.7 10.2 120 271-405 10-133 (610)
34 COG0607 PspE Rhodanese-related 99.7 4.7E-17 1E-21 135.6 8.9 96 279-402 13-109 (110)
35 PRK05597 molybdopterin biosynt 99.7 8.5E-18 1.8E-22 171.1 5.1 168 189-394 166-354 (355)
36 cd01530 Cdc25 Cdc25 phosphatas 99.7 5.1E-17 1.1E-21 141.3 9.3 99 271-393 3-120 (121)
37 cd01529 4RHOD_Repeats Member o 99.7 8.4E-17 1.8E-21 132.9 8.5 87 284-394 10-96 (96)
38 cd01522 RHOD_1 Member of the R 99.7 5.8E-17 1.3E-21 139.7 7.7 103 272-394 1-104 (117)
39 cd01445 TST_Repeats Thiosulfat 99.7 7.4E-17 1.6E-21 143.7 8.6 108 272-393 1-137 (138)
40 cd01532 4RHOD_Repeat_1 Member 99.7 1.2E-16 2.5E-21 131.8 8.2 84 283-394 7-92 (92)
41 PRK05600 thiamine biosynthesis 99.7 4E-17 8.6E-22 167.2 4.6 168 189-390 182-369 (370)
42 PRK08762 molybdopterin biosynt 99.7 3.3E-16 7.1E-21 160.3 10.2 105 271-405 4-108 (376)
43 cd01531 Acr2p Eukaryotic arsen 99.7 3.5E-16 7.7E-21 133.2 8.6 100 271-395 3-112 (113)
44 COG2897 SseA Rhodanese-related 99.6 8.1E-16 1.8E-20 152.5 9.6 131 271-416 12-153 (285)
45 cd00158 RHOD Rhodanese Homolog 99.6 7E-16 1.5E-20 122.9 7.4 88 277-393 2-89 (89)
46 PRK01415 hypothetical protein; 99.6 1.5E-15 3.3E-20 147.8 10.2 101 271-396 113-213 (247)
47 TIGR02981 phageshock_pspE phag 99.6 1.8E-15 3.9E-20 128.4 8.5 81 285-394 17-97 (101)
48 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 2E-15 4.4E-20 128.7 8.4 98 271-393 3-112 (113)
49 PRK05320 rhodanese superfamily 99.6 5E-15 1.1E-19 145.0 9.9 102 270-395 110-216 (257)
50 PRK10287 thiosulfate:cyanide s 99.6 6.5E-15 1.4E-19 125.7 8.0 81 285-394 19-99 (104)
51 PRK00142 putative rhodanese-re 99.6 9.4E-15 2E-19 146.8 10.2 100 271-395 113-212 (314)
52 PRK11784 tRNA 2-selenouridine 99.5 2.2E-13 4.9E-18 138.5 10.6 114 273-401 4-135 (345)
53 cd01446 DSP_MapKP N-terminal r 99.5 4.4E-13 9.5E-18 117.2 10.4 106 271-394 1-126 (132)
54 TIGR03167 tRNA_sel_U_synt tRNA 99.4 2.5E-13 5.4E-18 136.4 8.5 107 286-402 2-122 (311)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.1 1.6E-10 3.5E-15 122.3 7.5 81 275-387 398-482 (482)
56 KOG1529 Mercaptopyruvate sulfu 99.0 7.4E-10 1.6E-14 109.3 8.9 122 271-404 6-139 (286)
57 COG1054 Predicted sulfurtransf 98.9 1.2E-09 2.5E-14 108.5 5.8 96 271-394 114-212 (308)
58 KOG1529 Mercaptopyruvate sulfu 98.7 4.8E-08 1E-12 96.6 8.4 94 285-394 171-275 (286)
59 KOG3772 M-phase inducer phosph 98.5 2.3E-07 4.9E-12 93.5 6.9 103 270-395 156-276 (325)
60 COG5105 MIH1 Mitotic inducer, 97.1 0.0012 2.6E-08 66.9 6.8 98 270-394 242-357 (427)
61 PF05237 MoeZ_MoeB: MoeZ/MoeB 96.1 0.00079 1.7E-08 55.3 -1.5 46 189-237 3-48 (84)
62 COG2603 Predicted ATPase [Gene 95.2 0.027 5.8E-07 56.8 5.1 95 285-393 14-127 (334)
63 PRK07688 thiamine/molybdopteri 93.7 0.035 7.7E-07 56.8 2.1 115 189-307 164-318 (339)
64 PF04273 DUF442: Putative phos 92.4 0.17 3.7E-06 43.9 4.2 86 270-372 13-104 (110)
65 TIGR01244 conserved hypothetic 92.4 0.57 1.2E-05 41.6 7.6 111 270-401 13-130 (135)
66 PRK08223 hypothetical protein; 87.7 0.33 7.2E-06 49.0 2.2 53 183-238 160-241 (287)
67 KOG1093 Predicted protein kina 86.5 0.26 5.6E-06 53.8 0.7 95 271-391 623-717 (725)
68 KOG1717 Dual specificity phosp 81.9 1.3 2.7E-05 44.7 3.1 107 272-394 6-123 (343)
69 cd01445 TST_Repeats Thiosulfat 81.7 1.4 3.1E-05 39.2 3.3 92 161-265 1-118 (138)
70 PF13350 Y_phosphatase3: Tyros 81.3 7.3 0.00016 35.3 7.8 97 270-380 28-152 (164)
71 PRK00142 putative rhodanese-re 81.1 0.21 4.5E-06 50.8 -2.7 53 268-330 12-64 (314)
72 cd00127 DSPc Dual specificity 81.1 3.5 7.6E-05 35.4 5.4 27 353-379 80-109 (139)
73 KOG3636 Uncharacterized conser 75.9 10 0.00022 40.8 7.8 91 286-393 326-427 (669)
74 COG0476 ThiF Dinucleotide-util 70.9 3.5 7.5E-05 40.1 2.9 57 179-238 157-218 (254)
75 COG3453 Uncharacterized protei 68.8 11 0.00025 33.7 5.3 86 269-373 13-106 (130)
76 PRK05690 molybdopterin biosynt 68.7 3.6 7.7E-05 40.2 2.4 47 189-238 171-217 (245)
77 PF01442 Apolipoprotein: Apoli 67.7 3.1 6.8E-05 37.3 1.7 9 168-176 111-119 (202)
78 PRK12475 thiamine/molybdopteri 65.7 3 6.5E-05 42.8 1.3 47 188-237 163-209 (338)
79 TIGR02355 moeB molybdopterin s 62.7 5.6 0.00012 38.8 2.5 46 189-237 163-208 (240)
80 smart00195 DSPc Dual specifici 62.6 14 0.00031 31.8 4.8 29 352-380 76-107 (138)
81 PRK08762 molybdopterin biosynt 62.5 4.4 9.5E-05 41.9 1.8 46 189-237 277-324 (376)
82 TIGR02356 adenyl_thiF thiazole 60.6 5.8 0.00013 37.5 2.1 41 189-232 160-200 (202)
83 TIGR03167 tRNA_sel_U_synt tRNA 59.0 21 0.00045 36.5 5.9 33 271-304 137-172 (311)
84 PF09992 DUF2233: Predicted pe 57.6 12 0.00026 33.9 3.6 40 352-391 98-142 (170)
85 PF01451 LMWPc: Low molecular 57.5 7.5 0.00016 33.9 2.2 36 357-392 1-41 (138)
86 PF05957 DUF883: Bacterial pro 54.5 33 0.00072 28.4 5.5 60 70-129 6-65 (94)
87 PF03853 YjeF_N: YjeF-related 52.3 22 0.00048 32.6 4.5 52 352-404 23-89 (169)
88 PF02590 SPOUT_MTase: Predicte 51.7 44 0.00095 30.7 6.2 50 343-392 56-110 (155)
89 KOG0781 Signal recognition par 51.1 73 0.0016 35.0 8.5 145 72-236 271-437 (587)
90 PLN02727 NAD kinase 50.3 29 0.00063 40.6 5.8 92 270-375 267-364 (986)
91 PF05706 CDKN3: Cyclin-depende 48.8 44 0.00094 31.5 5.8 81 288-378 74-159 (168)
92 TIGR03603 cyclo_dehy_ocin bact 45.7 9.5 0.00021 38.9 1.0 44 189-236 201-260 (318)
93 smart00226 LMWPc Low molecular 45.7 21 0.00046 31.1 3.1 36 357-392 1-37 (140)
94 PLN03050 pyridoxine (pyridoxam 43.4 36 0.00078 33.5 4.6 31 354-385 60-93 (246)
95 PF00782 DSPc: Dual specificit 43.2 40 0.00087 28.7 4.4 29 352-380 71-102 (133)
96 PF13344 Hydrolase_6: Haloacid 41.4 40 0.00088 28.3 4.0 28 353-380 29-57 (101)
97 PRK08328 hypothetical protein; 37.8 16 0.00034 35.4 1.1 44 189-238 166-209 (231)
98 COG0062 Uncharacterized conser 36.8 60 0.0013 31.4 4.9 33 354-387 49-85 (203)
99 TIGR00197 yjeF_nterm yjeF N-te 36.4 56 0.0012 31.1 4.6 33 352-385 43-78 (205)
100 cd02071 MM_CoA_mut_B12_BD meth 36.3 85 0.0018 27.1 5.4 46 353-398 49-104 (122)
101 PRK10565 putative carbohydrate 36.1 51 0.0011 35.8 4.8 33 352-385 58-93 (508)
102 PF05957 DUF883: Bacterial pro 35.4 90 0.002 25.8 5.2 12 167-178 59-70 (94)
103 PRK10126 tyrosine phosphatase; 34.5 45 0.00097 29.8 3.5 37 355-392 3-40 (147)
104 PF06152 Phage_min_cap2: Phage 34.4 1.8E+02 0.0039 30.4 8.3 58 75-132 123-180 (361)
105 PRK12361 hypothetical protein; 32.5 1.4E+02 0.003 32.5 7.4 18 352-369 173-191 (547)
106 PLN03049 pyridoxine (pyridoxam 31.9 68 0.0015 34.6 4.8 44 355-399 60-116 (462)
107 PF04722 Ssu72: Ssu72-like pro 31.6 68 0.0015 30.9 4.3 29 356-385 3-32 (195)
108 COG2519 GCD14 tRNA(1-methylade 31.3 1.1E+02 0.0023 30.8 5.7 32 352-383 186-217 (256)
109 TIGR02689 ars_reduc_gluta arse 31.2 82 0.0018 27.3 4.5 45 356-400 2-57 (126)
110 PRK00103 rRNA large subunit me 31.0 91 0.002 28.8 4.9 45 348-392 61-110 (157)
111 PRK11391 etp phosphotyrosine-p 30.1 59 0.0013 29.1 3.4 37 355-392 3-40 (144)
112 PF02302 PTS_IIB: PTS system, 29.3 65 0.0014 25.7 3.3 32 356-388 1-37 (90)
113 COG2085 Predicted dinucleotide 29.1 2.7E+02 0.0059 27.1 8.0 28 354-381 147-175 (211)
114 PF07464 ApoLp-III: Apolipopho 28.6 1.5E+02 0.0032 27.5 5.8 45 92-136 31-75 (155)
115 cd00115 LMWPc Substituted upda 28.4 50 0.0011 28.9 2.7 37 356-392 2-40 (141)
116 PLN02918 pyridoxine (pyridoxam 28.0 84 0.0018 34.8 4.8 44 355-399 136-192 (544)
117 PF09718 Tape_meas_lam_C: Lamb 27.9 1.8E+02 0.0038 23.4 5.5 40 78-117 8-47 (78)
118 TIGR00853 pts-lac PTS system, 27.8 70 0.0015 26.8 3.3 38 354-392 3-44 (95)
119 PF04343 DUF488: Protein of un 27.6 49 0.0011 28.6 2.4 21 274-294 2-22 (122)
120 COG2453 CDC14 Predicted protei 27.2 1.1E+02 0.0024 28.3 4.8 28 352-379 103-133 (180)
121 KOG0572 Glutamine phosphoribos 26.5 1E+02 0.0022 32.9 4.8 43 343-385 345-390 (474)
122 KOG1386 Nucleoside phosphatase 25.3 48 0.001 36.1 2.3 49 352-400 83-149 (501)
123 COG0034 PurF Glutamine phospho 24.4 1.1E+02 0.0023 33.3 4.6 38 351-388 345-385 (470)
124 COG0647 NagD Predicted sugar p 24.2 1.1E+02 0.0025 30.6 4.6 25 377-401 89-115 (269)
125 PF07464 ApoLp-III: Apolipopho 24.2 3.3E+02 0.0071 25.2 7.3 51 84-134 27-77 (155)
126 PRK01565 thiamine biosynthesis 23.5 1.1E+02 0.0024 32.1 4.5 28 353-380 175-202 (394)
127 TIGR00640 acid_CoA_mut_C methy 23.5 1.7E+02 0.0037 26.0 5.2 46 353-398 52-107 (132)
128 PLN03094 Substrate binding sub 23.1 2.1E+02 0.0046 30.1 6.5 10 48-57 186-195 (370)
129 cd05565 PTS_IIB_lactose PTS_II 23.0 88 0.0019 26.7 3.0 36 356-392 2-41 (99)
130 cd05567 PTS_IIB_mannitol PTS_I 22.3 1E+02 0.0022 25.0 3.2 36 356-392 2-42 (87)
131 PF07755 DUF1611: Protein of u 22.3 1.6E+02 0.0035 30.1 5.3 40 361-401 122-165 (301)
132 PRK13530 arsenate reductase; P 22.1 1.5E+02 0.0033 26.1 4.5 35 355-389 4-39 (133)
133 PRK09590 celB cellobiose phosp 22.1 94 0.002 26.7 3.1 35 356-391 3-41 (104)
134 PF05802 EspB: Enterobacterial 21.7 5.2E+02 0.011 26.5 8.5 29 177-205 225-254 (317)
135 cd00133 PTS_IIB PTS_IIB: subun 21.0 92 0.002 23.6 2.6 24 356-379 1-29 (84)
136 COG1576 Uncharacterized conser 20.8 2.8E+02 0.0061 25.9 6.0 48 343-391 56-108 (155)
137 cd05564 PTS_IIB_chitobiose_lic 20.2 99 0.0021 25.8 2.8 36 356-392 1-40 (96)
No 1
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=5.2e-20 Score=155.68 Aligned_cols=99 Identities=26% Similarity=0.220 Sum_probs=84.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk 349 (423)
..++++++.+++..+.+.+|||||++.||..+|||||+ |+|+.++...+..+ +
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l--------------~----- 62 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGEL--------------A----- 62 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhc--------------C-----
Confidence 36999999999864446899999999999999999999 99986654433322 1
Q ss_pred cCCCCceEEEEeCCCchHHHHHHHHHHccCCC-eEEecccHHHHHHcC
Q 014526 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (423)
Q Consensus 350 ~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~n-V~~L~GG~~aW~aaG 396 (423)
.+++++||+||++|.||..+++.|+.+||++ +++|.||+.+|..+|
T Consensus 63 -~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 -PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1467899999999999999999999999987 999999999999876
No 2
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.80 E-value=1.2e-19 Score=151.34 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=81.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
.|+++++.+++. +++.+|||||++.||..+|||||+ |+|+.++......+ .. +..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~~-------~~---------~~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFWL-------DE---------NLD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHHH-------Hh---------hhh
Confidence 489999999984 667899999999999999999999 89987653321111 11 011
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 3688999999999999999999999999999999999999996
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.79 E-value=1.2e-19 Score=178.40 Aligned_cols=213 Identities=18% Similarity=0.208 Sum_probs=144.7
Q ss_pred chhHHHHHHHHHHhhhhcccCcc----------eEEEeeccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHH
Q 014526 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (423)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie 229 (423)
-|+.++|++.+..-+-.|.|.|+ .-.|.-||++..+.-+...... . ..|+...+. ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~----~----~~~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSD----H----TSPLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcC----C----CCCCCCCCC-CHHHHH
Confidence 36788999988655556899986 3467789999877655443210 0 111111111 123455
Q ss_pred HHHHhcCCCCCCCcchhhhhhhhhhhHHHHH--HH------------------HHhcCCC---C----------------
Q 014526 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFY--WW------------------WTYGGYS---G---------------- 270 (423)
Q Consensus 230 ~l~~~lgf~~~~pvl~~~v~~g~~~~~~~~~--~~------------------~~~~~y~---g---------------- 270 (423)
.+.+.+|+..++||++ +...+...+.+ +. |...++. +
T Consensus 77 ~~~~~~Gi~~d~~VVv----yc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~ 152 (281)
T PRK11493 77 VAMRELGVNQDKHLVV----YDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPE 152 (281)
T ss_pred HHHHHcCCCCCCEEEE----ECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCcc
Confidence 5666689999999954 44332222211 11 2222211 0
Q ss_pred -ccCHHHHHHHHhCCCCcEEEEcCChhhHh-----------hcCCCCCcccccccccccCcccccchHHhhhcCchhhhh
Q 014526 271 -DLSPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDD 338 (423)
Q Consensus 271 -~ISp~el~~lL~~~~~avLIDVRs~~Ef~-----------~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~ 338 (423)
..+.+++...+ .+++++|||+|++.||. .||||||+ |+|+..+... ..++++++++.
T Consensus 153 ~~~~~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~ 221 (281)
T PRK11493 153 AVVRLTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDA 221 (281)
T ss_pred ceecHHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHH
Confidence 01223344444 34568999999999994 69999999 8887665432 23567788888
Q ss_pred HHHHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH-cCCceecc
Q 014526 339 TLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (423)
Q Consensus 339 ~laalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a-aGLPv~~~ 402 (423)
.+.+.|+ +++++||+||++|.||..++..|+.+||+++++|+|||.+|.. .++|++++
T Consensus 222 ~~~~~g~------~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 222 IFFGRGV------SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HHHhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 8888877 4888999999999999999999999999999999999999998 79999865
No 4
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.79 E-value=1.3e-19 Score=181.82 Aligned_cols=214 Identities=17% Similarity=0.220 Sum_probs=148.6
Q ss_pred chhHHHHHHHHHHhhhhcccCc---------ceEEEeeccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHH
Q 014526 160 VAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (423)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~ 230 (423)
-|+.+||++.+..-+-.|.|.| +...|.-||++..+.-++....... .+....+. ..+.++.
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~--------~~~~~~lp-~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT--------TDLPHMLP-SEEAFAA 93 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC--------CCcCCCCC-CHHHHHH
Confidence 5778899988855344567764 1246788999999887665432111 11111111 2244555
Q ss_pred HHHhcCCCCCCCcchhhhhhhhhhhHHHHHHH--------------------HHhcCCC---C-----------------
Q 014526 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWW--------------------WTYGGYS---G----------------- 270 (423)
Q Consensus 231 l~~~lgf~~~~pvl~~~v~~g~~~~~~~~~~~--------------------~~~~~y~---g----------------- 270 (423)
+.+.+|+.++++|++ |+..+...+.+.+ |...++. +
T Consensus 94 ~l~~~Gi~~~~~VVv----Y~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~ 169 (320)
T PLN02723 94 AVSALGIENKDGVVV----YDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIE 169 (320)
T ss_pred HHHHcCCCCCCEEEE----EcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccc
Confidence 667789999999954 5443333332222 2222211 0
Q ss_pred ---------------------ccCHHHHHHHHhCCCCcEEEEcCChhhH-----------hhcCCCCCcccccccccccC
Q 014526 271 ---------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVY 318 (423)
Q Consensus 271 ---------------------~ISp~el~~lL~~~~~avLIDVRs~~Ef-----------~~gHIPGA~~a~~~~~~nIP 318 (423)
.++.+++.+.+ ++++.+|||+|++.|| ..||||||+ |+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip 240 (320)
T PLN02723 170 KVYQGQTVSPITFQTKFQPHLVWTLEQVKKNI-EDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVP 240 (320)
T ss_pred cccccCCCCCCcccccCCccceecHHHHHHhh-cCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccC
Confidence 03566777777 3557889999999988 569999998 888
Q ss_pred cccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHc-CC
Q 014526 319 LPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GL 397 (423)
Q Consensus 319 l~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aa-GL 397 (423)
+..+...- ..+++++++++.+..+|+ +++++||+||++|.||..++..|+.+||++|++|+|||.+|... ++
T Consensus 241 ~~~~~~~~-~~~~~~~el~~~~~~~gi------~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~ 313 (320)
T PLN02723 241 FPQMLDSS-QTLLPAEELKKRFEQEGI------SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDT 313 (320)
T ss_pred HHHhcCCC-CCCCCHHHHHHHHHhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCC
Confidence 75543322 346788899999988887 48899999999999999999999999999999999999999875 68
Q ss_pred ceecc
Q 014526 398 RIKEL 402 (423)
Q Consensus 398 Pv~~~ 402 (423)
|++++
T Consensus 314 Pv~~~ 318 (320)
T PLN02723 314 PVATS 318 (320)
T ss_pred CccCC
Confidence 88753
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.79 E-value=3e-19 Score=150.81 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=87.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk 349 (423)
..++++++.+++. +.+.++||+|++.||..+|||||+ ++|+..+...+..
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~~--------------------- 54 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMRQ--------------------- 54 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHHh---------------------
Confidence 3689999999984 456899999999999999999998 8886554333221
Q ss_pred cCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCceecc
Q 014526 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (423)
Q Consensus 350 ~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~ 402 (423)
++++++|++||.+|.+|..++..|+..||+++++++||+.+|...|+|++..
T Consensus 55 -~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 55 -ADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred -cCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 3578899999999999999999999999999999999999999999998763
No 6
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.79 E-value=3.5e-19 Score=147.51 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=83.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
.++++++.++++. +.+|||+|+++||..+|||||+ ++|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 5899999999853 3899999999999999999998 888765543211 1
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCce
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv 399 (423)
++++++||+||++|.|+..++..|+++||.++++|.||+.+|...|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 3678999999999999999999999999999999999999999999984
No 7
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.79 E-value=2.3e-19 Score=184.57 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=129.7
Q ss_pred eccCCCCCCcchHH--HhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCCCC--CCcchhhhhhhhhhhHHHH----
Q 014526 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPN--DPIVPFVVFLGTSATLWIF---- 259 (423)
Q Consensus 188 ~G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~~~--~pvl~~~v~~g~~~~~~~~---- 259 (423)
+|+|++|++|+..+ .+.+|.+.| +++|+.+.++ ..++.|.++-++|+... ..++. ++....-+-.
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~~----~d~~~~~~~~~~~~ 255 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAEGG--VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLMV----YDALEMTYRTIKIR 255 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCccCC--ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEE----EECCCCceeeEeec
Confidence 58999999986433 567899888 9999999999 89999999999986431 12221 2221111100
Q ss_pred -------------HHHHHh--------cCCCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccC
Q 014526 260 -------------YWWWTY--------GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVY 318 (423)
Q Consensus 260 -------------~~~~~~--------~~y~g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIP 318 (423)
|-.+.. ......++++++.++++++++.++||||+++||..+|||||+ |+|
T Consensus 256 ~~~~C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip 327 (392)
T PRK07878 256 KDPSTPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIP 327 (392)
T ss_pred cCCCCCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcC
Confidence 000000 011135899999999865556899999999999999999998 888
Q ss_pred cccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCc
Q 014526 319 LPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (423)
Q Consensus 319 l~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLP 398 (423)
+.++.... . +..++++++||+||++|.||..+++.|++.||++|++|+||+.+|.+.+.|
T Consensus 328 ~~~l~~~~-~-------------------~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 328 KSEILSGE-A-------------------LAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred hHHhcchh-H-------------------HhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 76553210 0 012468899999999999999999999999999999999999999987655
No 8
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.79 E-value=5.6e-19 Score=146.73 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=80.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccC
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l 351 (423)
|+++++.++++++++++|||||++.||..+|||||+ |+|+..+....... .... +..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~------~~~~--------~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEI------EEDI--------LDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHh------hHHH--------HhhC
Confidence 578999999976567899999999999999999998 88876654322000 0000 1124
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 352 ~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
+++++||+||.+|.||..++..|+..||+ +++|.||+.+|.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 68899999999999999999999999998 999999999996
No 9
>PLN02160 thiosulfate sulfurtransferase
Probab=99.78 E-value=5.5e-19 Score=157.02 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=87.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCC--cccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhh
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA--~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~ 347 (423)
..+++.++.++++ .+.+|||||++.||..|||||| + |+|+..+. ... .+++++++....
T Consensus 15 ~~i~~~e~~~~~~--~~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~-~~~-~l~~~~~~~~~~------- 75 (136)
T PLN02160 15 VSVDVSQAKTLLQ--SGHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNT-PQG-RVKNQEFLEQVS------- 75 (136)
T ss_pred eEeCHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCccee--------cccchhcC-ccc-ccCCHHHHHHHH-------
Confidence 3689999999985 3468999999999999999999 6 67753321 111 112222222211
Q ss_pred hccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCceeccc
Q 014526 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (423)
Q Consensus 348 Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~ 403 (423)
..++++++||+||++|.||..++..|...||++|++|.|||.+|.++|+|+++..
T Consensus 76 -~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 76 -SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred -hccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 1136788999999999999999999999999999999999999999999998753
No 10
>PRK07411 hypothetical protein; Validated
Probab=99.78 E-value=5.1e-19 Score=182.09 Aligned_cols=178 Identities=20% Similarity=0.209 Sum_probs=127.2
Q ss_pred ccCCCCCCcchHH--HhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCCCC--CCcchhhhhhhhhhhHHH------
Q 014526 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPN--DPIVPFVVFLGTSATLWI------ 258 (423)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~~~--~pvl~~~v~~g~~~~~~~------ 258 (423)
||||+|++|+.++ .+.+|.+.| |++|+.+.++ ..++.|.++-++|+... .-++. ++....-+-
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~~g--vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~~----~d~~~~~~~~~~~~~ 248 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAEGG--VLGILPGIIG-VIQATETIKIILGAGNTLSGRLLL----YNALDMKFRELKLRP 248 (390)
T ss_pred CCChHHhcCCCCCcccCCCCccCC--cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEEE----EECCCCceeEEeccC
Confidence 5899999987533 566899999 9999999999 89999999999986431 12211 221111100
Q ss_pred -----------HHHHHHh-----------cCCCCccCHHHHHHHHhCCC-CcEEEEcCChhhHhhcCCCCCccccccccc
Q 014526 259 -----------FYWWWTY-----------GGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYA 315 (423)
Q Consensus 259 -----------~~~~~~~-----------~~y~g~ISp~el~~lL~~~~-~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~ 315 (423)
.|-.+.. +.....|+++++.++++.+. +.+|||||++.||..||||||+
T Consensus 249 ~~~c~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi-------- 320 (390)
T PRK07411 249 NPERPVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV-------- 320 (390)
T ss_pred CCCCCccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------
Confidence 0000100 01123689999999986443 6799999999999999999998
Q ss_pred ccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHc
Q 014526 316 SVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (423)
Q Consensus 316 nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aa 395 (423)
|+|+.++..... .+. ++.++++++||+||++|.||..+++.|+.+||++ +.|.||+.+|...
T Consensus 321 niP~~~l~~~~~-----~~~------------l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~ 382 (390)
T PRK07411 321 LVPLPDIENGPG-----VEK------------VKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSRE 382 (390)
T ss_pred EccHHHhhcccc-----hHH------------HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHh
Confidence 888765532110 001 1123578999999999999999999999999974 6899999999987
Q ss_pred CCce
Q 014526 396 GLRI 399 (423)
Q Consensus 396 GLPv 399 (423)
..|.
T Consensus 383 ~~p~ 386 (390)
T PRK07411 383 VDPS 386 (390)
T ss_pred cCCC
Confidence 6654
No 11
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=6.3e-19 Score=145.54 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=77.5
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 272 ISp~el~~lL~~~-~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
|+++++.+++.++ ++.+|||||++.||..+|||||+ |+|+.++......+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6789999998644 36789999999999999999999 888765543322211
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
..++++||+||++|.||..++..|+.+||+ |++|+||+.+|.+
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 125789999999999999999999999998 9999999999963
No 12
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.7e-19 Score=174.83 Aligned_cols=215 Identities=17% Similarity=0.207 Sum_probs=160.3
Q ss_pred cchhHHHHHHHHH-----HhhhhcccCcc--eEEEeeccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHH
Q 014526 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (423)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l 231 (423)
--|+.|||.+.+. .++-++..... -..|.-||++..++-+....++-... .-.++.. -+.++.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~----~~~~lp~-----~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP----LPHMLPS-----PEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC----CCCCCCC-----HHHHHHH
Confidence 3578999999876 33433333333 47788899999999988876633211 1222222 2334556
Q ss_pred HHhcCCCCCCCcchhhhhhhhhhhHHHHHHHHHhc--------------------CCC--------------------Cc
Q 014526 232 ERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYG--------------------GYS--------------------GD 271 (423)
Q Consensus 232 ~~~lgf~~~~pvl~~~v~~g~~~~~~~~~~~~~~~--------------------~y~--------------------g~ 271 (423)
.+.+|+..+++| |+|+..+.+++.|.||.++ ++. ..
T Consensus 82 ~~~~GI~~d~tV----VvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~ 157 (285)
T COG2897 82 LGELGIRNDDTV----VVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAV 157 (285)
T ss_pred HHHcCCCCCCEE----EEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCcccc
Confidence 677999999999 5688888888888887441 110 12
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh----------cCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHH
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~~----------gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~la 341 (423)
.+..+....+ +....+|||+|++++|.. ||||||+ |+|...+.+ -..+++.+++++.+++
T Consensus 158 ~~~~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 158 VDATLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYA 227 (285)
T ss_pred CCHHHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHH
Confidence 4445566666 456788999999999988 9999999 999877766 3456677788888887
Q ss_pred HHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHc-CCceecc
Q 014526 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRIKEL 402 (423)
Q Consensus 342 alGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aa-GLPv~~~ 402 (423)
..|| +++++||+||++|.||+.....|+.+|+.+.++|+|+|.+|.+. +.|++++
T Consensus 228 ~~gi------~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 228 DAGI------DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred hcCC------CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 8887 59999999999999999999999999999889999999999874 5688765
No 13
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.77 E-value=1e-18 Score=149.95 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCCh-------hhHhhcCCCCCcccccccccccCcccccch---HHhhhcCchhhhhHHH
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~-------~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~---l~~llk~~~~Le~~la 341 (423)
++++++.+++. +++.+|||+|++ .+|..+|||||+ |+|+.++... ....++++.++++.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 78999999984 467899999999 999999999998 8887555432 2345566777777776
Q ss_pred HHHHhhhccCCCCceEEEEeCC-CchHHHHHHHHHHccCCCeEEecccHHHHHHcC
Q 014526 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (423)
Q Consensus 342 alGI~~Lk~l~kd~~IIVyC~s-G~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaG 396 (423)
..++ +++++||+||++ |.++..+++.|+.+||++|++|+||+.+|.++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6655 589999999999 489999999999999999999999999999865
No 14
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.77 E-value=6.3e-19 Score=147.02 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=84.0
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCC
Q 014526 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (423)
Q Consensus 273 Sp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~ 352 (423)
+++++.++++.+++.+|||+|++.||..||||||+ ++|+.++... ...+++++...+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888732567999999999999999999998 8887665432 22334445554444333 5
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 353 kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
++++||+||++|.+|..+++.|+.+||++|++|+||+.+|.+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 789999999999999999999999999999999999999963
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.76 E-value=2.8e-18 Score=145.68 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=83.8
Q ss_pred CccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhh
Q 014526 270 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (423)
Q Consensus 270 g~ISp~el~~lL~~~-~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~L 348 (423)
..++++++.++++++ ++.+|||+|++.+|..+|||||+ ++|...+.....
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~--------------------- 58 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT--------------------- 58 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh---------------------
Confidence 479999999999654 56899999999999999999998 888655431110
Q ss_pred ccCCCCceEEEEeCCCc--hHHHHHHHHHHccCCCeEEecccHHHHHHcCCce
Q 014526 349 KIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (423)
Q Consensus 349 k~l~kd~~IIVyC~sG~--rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv 399 (423)
..++++++||+||++|. ++..+++.|+.+||+ +++|+||+.+|..+|+|+
T Consensus 59 ~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 12468999999999884 899999999999995 999999999999999985
No 16
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.76 E-value=1.5e-18 Score=187.69 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=152.4
Q ss_pred chhHHHHHHHHHHhhhhcccCcceEEEeeccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCCC
Q 014526 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (423)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~~ 239 (423)
-++.++|++.+..-+-.+.|.|+.--|.=||++..+.-++...... . . ..-+++.. ...++.+.+.+|++.
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~-~--~-~~~~~lp~-----~~~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLG-K--P-PAPGLLPD-----TADLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhcc-C--C-CCCCCCCC-----HHHHHHHHHHcCCCC
Confidence 4778999999966556789999988888899998887665432211 0 0 01122221 123444555689999
Q ss_pred CCCcchhhhhhhhhhhHHHHHHHH--------------------HhcCCC--------------------CccCHHHHHH
Q 014526 240 NDPIVPFVVFLGTSATLWIFYWWW--------------------TYGGYS--------------------GDLSPKSTLE 279 (423)
Q Consensus 240 ~~pvl~~~v~~g~~~~~~~~~~~~--------------------~~~~y~--------------------g~ISp~el~~ 279 (423)
+++|+ +|+..+..++.+.+| ...++. -.++.+++.+
T Consensus 81 d~~VV----vYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~ 156 (610)
T PRK09629 81 DAVYV----VYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQS 156 (610)
T ss_pred CCEEE----EECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHH
Confidence 99995 455444333333332 222110 0256678888
Q ss_pred HHhCCCCcEEEEcCChhhHh--------hcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccC
Q 014526 280 LLRGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (423)
Q Consensus 280 lL~~~~~avLIDVRs~~Ef~--------~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l 351 (423)
.+ ++++.+|||+|+++||. .||||||+ |+|+..+.... ..+++++++++++..+|+
T Consensus 157 ~l-~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi------ 220 (610)
T PRK09629 157 RL-GAADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGI------ 220 (610)
T ss_pred hh-CCCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCC------
Confidence 87 45678999999999994 79999998 78764432221 235777889999988887
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHc-CCceecc
Q 014526 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRIKEL 402 (423)
Q Consensus 352 ~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aa-GLPv~~~ 402 (423)
+++++||+||++|.||..+++.|+.+||++|++|+|||.+|.+. ++|+++.
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 48999999999999999999999999999999999999999874 7898764
No 17
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.76 E-value=1.2e-18 Score=148.12 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=89.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh-----------cCCCCCcccccccccccCcccccchHHhhhcCchhhhhHH
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~~-----------gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~l 340 (423)
++++++.++++ +++++|||+|++.||.. ||||||+ ++|+..+.... ..+++++++.+.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889988884 55689999999999987 9999998 88876554322 2346667777777
Q ss_pred HHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 341 aalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
..+++ +++++||+||++|.+|..+++.|+.+||+++++|+||+.+|.+
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 77665 4889999999999999999999999999999999999999963
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.75 E-value=3.6e-18 Score=139.80 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=79.7
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh--cCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~~--gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk 349 (423)
|++.++.++++++.++++||+|++.+|.. +|||||+ ++|+.++.....
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~---------------------- 51 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG---------------------- 51 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh----------------------
Confidence 78999999886446799999999999999 9999998 888765533221
Q ss_pred cCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 350 ~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
.++++++||+||++|.+|..+++.|+..||+++++|+||+.+|.
T Consensus 52 ~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 14689999999999999999999999999999999999999996
No 19
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.75 E-value=4.3e-18 Score=147.24 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=87.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk 349 (423)
..|+++++.++++++++++|||+|++.||..+|||||+ |+|+.++......+.+ + .+...
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~----~--~~~~~------ 67 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKS----L--QELPL------ 67 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhh----h--hhccc------
Confidence 47999999999865467899999999999999999999 8988666543322100 0 01111
Q ss_pred cCCCCceEEEEeCCCchHHHHHHHHHHccC-CCeEEecccHHHHHHcCCce
Q 014526 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 399 (423)
Q Consensus 350 ~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf-~nV~~L~GG~~aW~aaGLPv 399 (423)
.++++++||+||++|.||..+++.|+..|| +++++|+|||.+|.....|.
T Consensus 68 ~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 68 DNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred ccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 236899999999999999999999999999 79999999999999876654
No 20
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.74 E-value=6.4e-18 Score=154.48 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=83.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChh----hHhhc---------CCCCCcccccccccccCc---ccccchHHhhhcCc
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG 333 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~----Ef~~g---------HIPGA~~a~~~~~~nIPl---~el~~~l~~llk~~ 333 (423)
..|+++++.+++. +++.+|||||++. ||..| |||||+ ++|. .++.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 3799999999994 5678999999876 46544 999998 5553 2222111 0
Q ss_pred hhhhhHHHHHHHhhhccCCCCceEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHHHHHHcCCce
Q 014526 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (423)
Q Consensus 334 ~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv 399 (423)
..+...+.+++. .+++++||+||++|. +|..+++.|+.+||++|++|+|||.+|..+|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112233333332 258999999999997 8999999999999999999999999999999985
No 21
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.74 E-value=8e-18 Score=140.25 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=80.7
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 014526 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (423)
Q Consensus 271 ~ISp~el~~lL~~~-~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk 349 (423)
+|+++++.+++..+ .+.++||+|++.||..+|||||+ ++|+.++......+ .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~ 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------D 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------c
Confidence 47899999999643 36899999999999999999998 88876554332221 1
Q ss_pred cCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 350 ~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
..+++++||+||++|.||..++..|.+.||+++++|+||+.+|..
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 114688999999999999999999999999999999999999975
No 22
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.74 E-value=1e-18 Score=174.73 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=138.6
Q ss_pred eEEEee--ccCCCCCCcchHH--HhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCCC-CCCcchhhhhhhhhhhHH
Q 014526 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP-NDPIVPFVVFLGTSATLW 257 (423)
Q Consensus 183 ~~~~~~--G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~~-~~pvl~~~v~~g~~~~~~ 257 (423)
-+||-| ||||||++|++++ ++.+|+|.| |++|+.|.++ .++|+|.++-++|+.. -.|.|. +|-|..+ -|
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~dgG--VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~-~~ 269 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCADGG--VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSG-HF 269 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhcccccCc--eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccc-ee
Confidence 456666 8999999999999 999999999 9999999999 9999999999998763 345543 3444433 22
Q ss_pred HHHHHHHh-------------------------cCC----------CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcC
Q 014526 258 IFYWWWTY-------------------------GGY----------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG 302 (423)
Q Consensus 258 ~~~~~~~~-------------------------~~y----------~g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gH 302 (423)
..+.+..+ ..+ ..+|+..++++++++.+..++||||++.||+-.|
T Consensus 270 r~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~ 349 (427)
T KOG2017|consen 270 RTIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICR 349 (427)
T ss_pred EEEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEe
Confidence 22211100 000 1257888999999877899999999999999999
Q ss_pred CCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCC-C
Q 014526 303 IPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-R 381 (423)
Q Consensus 303 IPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~-n 381 (423)
+|+|. |||+.++.....+-.. .. .-....+|+|+|+.|+.|+++++.|++..+. .
T Consensus 350 lP~av--------NIPL~~l~~~~~~~~~------~~----------~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~ 405 (427)
T KOG2017|consen 350 LPEAV--------NIPLKELRSRSGKKLQ------GD----------LNTESKDIFVICRRGNDSQRAVRILREKFPDSS 405 (427)
T ss_pred ccccc--------ccchhhhhhhhhhhhc------cc----------ccccCCCEEEEeCCCCchHHHHHHHHhhCCchh
Confidence 99999 9999877655441100 00 0124567999999999999999999976553 6
Q ss_pred eEEecccHHHHHHc
Q 014526 382 AFLVQGGFQSWVKE 395 (423)
Q Consensus 382 V~~L~GG~~aW~aa 395 (423)
|+.+.||+.+|...
T Consensus 406 vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 406 VRDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhhHHHHHHHh
Confidence 88899999999874
No 23
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.74 E-value=4.6e-18 Score=167.18 Aligned_cols=121 Identities=15% Similarity=0.232 Sum_probs=99.8
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCC----------hhhHhhcCCCCCcccccccccccCcccccc---hHHhhhcCchhhh
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs----------~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~---~l~~llk~~~~Le 337 (423)
.++++++.+++ ++++++|||+|+ +.+|..||||||+ ++|+..+.. ....++++++.++
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 48899999999 567899999997 7899999999998 666533321 2234556678888
Q ss_pred hHHHHHHHhhhccCCCCceEEEEeCCCch-HHHHHHHHHHccCCCeEEecccHHHHHHcCCceecccccc
Q 014526 338 DTLTAAVIRNLKIVQDRSKVIVMDADGTR-SKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSET 406 (423)
Q Consensus 338 ~~laalGI~~Lk~l~kd~~IIVyC~sG~r-S~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~p~t 406 (423)
+.+..+|+ +++++||+||.+|.+ +.++++.|+.+||++|++|+||+.+|.++|+|+++..+..
T Consensus 77 ~~~~~~Gi------~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 140 (281)
T PRK11493 77 VAMRELGV------NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVEL 140 (281)
T ss_pred HHHHHcCC------CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCC
Confidence 99998887 489999999998774 6788899999999999999999999999999998875544
No 24
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.73 E-value=8e-18 Score=139.19 Aligned_cols=102 Identities=22% Similarity=0.331 Sum_probs=79.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhH-hhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef-~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
|+++++.+++. +++.+|||+|++.+| ..||||||+ |+|+..+...... .. .+.. ..
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~-----~~---~~~~------~~ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP-----DS---PYHK------PA 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc-----cc---cccc------cC
Confidence 57889999884 467899999999998 579999998 7886544321110 00 0000 12
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcC
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaG 396 (423)
++++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 4688999999999999999999999999999999999999998765
No 25
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.73 E-value=1e-17 Score=150.51 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=80.8
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCce
Q 014526 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (423)
Q Consensus 277 l~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~ 356 (423)
+.+++..+.+++|||||++.+|..+|||||+ ++|...+...+.. ++++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~~----------------------l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALEK----------------------LPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHHh----------------------cCCCCC
Confidence 3455555566899999999999999999998 7765444332221 356789
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCceecccc
Q 014526 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (423)
Q Consensus 357 IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~p 404 (423)
||+||.+|.+|..+++.|+..||++|++|.||+.+|.++|+|+++..+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987543
No 26
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.73 E-value=1.1e-17 Score=138.98 Aligned_cols=108 Identities=29% Similarity=0.492 Sum_probs=79.4
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCC
Q 014526 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (423)
Q Consensus 273 Sp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~ 352 (423)
||+|+.+++ ++++++|||+|++.+|..||||||+ |+|...+... ........+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD--EPSLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS--SSBCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc--cccccccccccccccccc----ccc
Confidence 689999999 6789999999999999999999998 6766433000 000111112222222222 357
Q ss_pred CCceEEEEeCCCchHHHHHHH-----HHHccCCCeEEecccHHHHHHc
Q 014526 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (423)
Q Consensus 353 kd~~IIVyC~sG~rS~~AA~~-----L~~~Gf~nV~~L~GG~~aW~aa 395 (423)
++++||+||..|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 889999999999988777666 8999999999999999999864
No 27
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.73 E-value=8.7e-18 Score=135.24 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=76.2
Q ss_pred CCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCC
Q 014526 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (423)
Q Consensus 284 ~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~s 363 (423)
+++.+|||+|++.||..+|||||+ |+|+..+....... .. ..++..+... ..+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~-~~-~~~~~~~~~~------~~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGEL-DI-LEFEELLKRL------GLDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCc-CH-HHHHHHHHHc------CCCCCCeEEEEeCC
Confidence 467899999999999999999998 88875543321110 00 0122222222 24688999999999
Q ss_pred CchHHHHHHHHHHccCCCeEEecccHHHHHHcCCc
Q 014526 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (423)
Q Consensus 364 G~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLP 398 (423)
|.++..+++.|+..||++|++|+||+.+|...|+|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998875
No 28
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=7.4e-18 Score=148.38 Aligned_cols=118 Identities=22% Similarity=0.245 Sum_probs=93.9
Q ss_pred hcCCCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHH
Q 014526 265 YGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (423)
Q Consensus 265 ~~~y~g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalG 344 (423)
.......++.+++.++++ .++.++||||+++||.+||+|.++ |||+...... ..+++++|+.+. |
T Consensus 18 ~~~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kqv----g 82 (136)
T KOG1530|consen 18 KASNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQV----G 82 (136)
T ss_pred ccCCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHHh----c
Confidence 334456788999999994 567999999999999999999999 8997433222 234555555542 2
Q ss_pred HhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCcee
Q 014526 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (423)
Q Consensus 345 I~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~ 400 (423)
. .| -+.+++|||+|++|.||..|...|..+||++|.+|.|||.+|...|+|.+
T Consensus 83 ~--~k-p~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 83 S--SK-PPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred c--cC-CCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 2 11 23567999999999999999999999999999999999999999998864
No 29
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.73 E-value=1.3e-17 Score=139.01 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=77.4
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccc---hHHhhhcCchhhhhHHHHHHHhh
Q 014526 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 347 (423)
Q Consensus 272 ISp~el~~lL~~~-~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~---~l~~llk~~~~Le~~laalGI~~ 347 (423)
|+++++.+++.++ ++++|||||++.||..||||||+ ++|+..+.. .... ++....+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~-~~~~~~~~~--------- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQ-LPTVPRLEN--------- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhccccccccc-ccchHHHHh---------
Confidence 6889999998643 36899999999999999999998 888654321 1111 111111111
Q ss_pred hccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 348 Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
.++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 63 ----~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 ----YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ----hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 247899999999999999999999999999999999999995
No 30
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.73 E-value=2.4e-17 Score=144.03 Aligned_cols=109 Identities=24% Similarity=0.355 Sum_probs=80.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchH--HhhhcC--------------chh
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--KKLLRG--------------GRE 335 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l--~~llk~--------------~~~ 335 (423)
|+++++.+++. ++.+|||||++.||..||||||+ |+|+..+..+. ....++ ...
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 68899999984 57899999999999999999998 88874432110 000000 122
Q ss_pred hhhHHHHHHHhhhccCCCCceEEEEeC-CCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 336 LDDTLTAAVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 336 Le~~laalGI~~Lk~l~kd~~IIVyC~-sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
+++.+..+.- .+++++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|..
T Consensus 71 ~~~~~~~~~~---~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LKRILNEAWE---ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHHH---hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 3333333210 02468999999997 68899999999999999 69999999999975
No 31
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.72 E-value=1.8e-17 Score=135.54 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=76.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccC
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l 351 (423)
++|+++.+++ .++.++||+|++++|..+|||||+ ++|+.++..... .+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~----------------------~~ 48 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLN----------------------EL 48 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHH----------------------hc
Confidence 4788999988 357799999999999999999998 888755433222 13
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 352 ~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
+++++||+||++|.++..+++.|+..|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 5788999999999999999999999999 9999999999996
No 32
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.71 E-value=2.4e-17 Score=165.45 Aligned_cols=118 Identities=17% Similarity=0.297 Sum_probs=98.3
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcC--------C-hhhHhhcCCCCCcccccccccccCcccccc---hHHhhhcCchhhhh
Q 014526 271 DLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDD 338 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVR--------s-~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~---~l~~llk~~~~Le~ 338 (423)
.|+++++.+++. +++.+|||+| + ..+|..||||||+ ++|+..+.. ....++++++.|++
T Consensus 23 lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred eecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 699999999994 5789999996 3 3789999999998 666544332 23455677788999
Q ss_pred HHHHHHHhhhccCCCCceEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHHHHHHcCCceeccc
Q 014526 339 TLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (423)
Q Consensus 339 ~laalGI~~Lk~l~kd~~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~ 403 (423)
.+..+||. ++++|||||..|. .+.++++.|+.+||++|++|+||+.+|..+|+|+++..
T Consensus 94 ~l~~~Gi~------~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 94 AVSALGIE------NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHcCCC------CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999884 8899999999887 45788899999999999999999999999999998764
No 33
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.70 E-value=2.9e-17 Score=177.65 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=100.8
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCccccc---chHHhhhcCchhhhhHHHHHHHhh
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIRN 347 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~---~~l~~llk~~~~Le~~laalGI~~ 347 (423)
.|+++++.+++ ++++++|||+|++.+|..||||||+ ++|+.... .....++++++++++.+..+||
T Consensus 10 lIs~~eL~~~l-~~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI-- 78 (610)
T PRK09629 10 VIEPNDLLERL-DAPELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGH-- 78 (610)
T ss_pred eecHHHHHHHh-cCCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCC--
Confidence 58999999999 4678999999999999999999998 55543211 1123456777889999999987
Q ss_pred hccCCCCceEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHHHHHHcCCceeccccc
Q 014526 348 LKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (423)
Q Consensus 348 Lk~l~kd~~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~p~ 405 (423)
+++++||+||++|. ++.+++|.|+.+||++|++|+||+.+|..+|+|+++..+.
T Consensus 79 ----~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~ 133 (610)
T PRK09629 79 ----NPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPP 133 (610)
T ss_pred ----CCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCC
Confidence 48999999999875 7889999999999999999999999999999999876543
No 34
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.7e-17 Score=135.60 Aligned_cols=96 Identities=31% Similarity=0.482 Sum_probs=81.3
Q ss_pred HHHhCCCCcEEEEcCChhhHhhcCCCC-CcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceE
Q 014526 279 ELLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKV 357 (423)
Q Consensus 279 ~lL~~~~~avLIDVRs~~Ef~~gHIPG-A~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~I 357 (423)
..+...++.++||||++.||..+|||+ +. ++|+.++........ .+++++|
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~i 64 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPI 64 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeE
Confidence 333356789999999999999999999 87 888877655433210 2589999
Q ss_pred EEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCceecc
Q 014526 358 IVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (423)
Q Consensus 358 IVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~ 402 (423)
||||++|.||..++..|+.+||++++++.||+.+|...++|+...
T Consensus 65 vv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 65 VVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 999999999999999999999999999999999999999998753
No 35
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.70 E-value=8.5e-18 Score=171.07 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=119.7
Q ss_pred ccCCCCCCcchHH--HhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchhhhhhhhhhhHHHHHHHHH
Q 014526 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (423)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~~--~~pvl~~~v~~g~~~~~~~~~~~~~ 264 (423)
|||++|++|+.++ .+..|.+.+ |++|+.+..+ ..++.|.++-++|+.. ...++. ++....-|-.+-+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~~g--v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~~----~d~~~~~~~~~~~~~ 238 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQAG--VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLGY----YDSLDGTWEYIPVVG 238 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccccC--cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEEE----EECCCCeEEEEeccC
Confidence 5899999997643 456788888 9999999999 8899999999998642 122221 222111100000000
Q ss_pred hc-----------------CCCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHH
Q 014526 265 YG-----------------GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK 327 (423)
Q Consensus 265 ~~-----------------~y~g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~ 327 (423)
.. +....++++++.++. ++.+|||||+++||..+|||||+ |+|+.++.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~~ 307 (355)
T PRK05597 239 NPAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGAN 307 (355)
T ss_pred CCCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhccc
Confidence 00 011146666776443 46799999999999999999999 888765533211
Q ss_pred hhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 328 KLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 328 ~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
.. .++++++||+||++|.||..+++.|+..||++|++|+||+.+|.+
T Consensus 308 ~~--------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 308 PP--------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred cc--------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 10 135788999999999999999999999999999999999999975
No 36
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.70 E-value=5.1e-17 Score=141.34 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=79.0
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcc-cccchHHhhhcCchhhhhHHHHHH
Q 014526 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (423)
Q Consensus 271 ~ISp~el~~lL~~~-----~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~-el~~~l~~llk~~~~Le~~laalG 344 (423)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. .+...+... ...+
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~----------~~~~- 63 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDK----------PGVA- 63 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHh----------hccc-
Confidence 58999999999643 47899999999999999999999 88874 333221110 0001
Q ss_pred HhhhccCCCCceEEEEeC-CCchHHHHHHHHHHc------------cCCCeEEecccHHHHH
Q 014526 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (423)
Q Consensus 345 I~~Lk~l~kd~~IIVyC~-sG~rS~~AA~~L~~~------------Gf~nV~~L~GG~~aW~ 393 (423)
.++++++||+||+ +|.||..+++.|+.. ||.+|++|+|||.+|.
T Consensus 64 -----~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 64 -----SKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred -----ccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 1368999999997 999999999999985 9999999999999984
No 37
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.69 E-value=8.4e-17 Score=132.91 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=69.7
Q ss_pred CCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCC
Q 014526 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (423)
Q Consensus 284 ~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~s 363 (423)
+++.+|||||++.+|..+|||||+ ++|+..+..... .++ .++ ..+++++||+||++
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~-------~~~----~~~-----~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQ-------ELQ----ALE-----APGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHH-------HHH----Hhh-----cCCCCCCEEEEeCC
Confidence 467899999999999999999998 888654422211 111 111 13678999999999
Q ss_pred CchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 364 G~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
|.+|..+++.|+..||++|++|+||+.+|.+
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 38
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.68 E-value=5.8e-17 Score=139.67 Aligned_cols=103 Identities=26% Similarity=0.337 Sum_probs=80.7
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHh-hcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~-~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
|+++++.++++++++.++||||++.||. .+|||||+ |+|+.++.... .+..+. ..+...
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~~~-~~l~~~------- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPNFL-AELEEK------- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHHHH-HHHHhh-------
Confidence 6889999999655689999999999999 99999998 78765543210 011111 111111
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
.+++++||+||++|.+|..+++.|+.+||++++.|.||+++|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 25789999999999999999999999999999999999999965
No 39
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.68 E-value=7.4e-17 Score=143.71 Aligned_cols=108 Identities=23% Similarity=0.252 Sum_probs=88.4
Q ss_pred cCHHHHHHHHhC---CCCcEEEEcCCh--------hhHhh------------cCCCCCcccccccccccCccccc---ch
Q 014526 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVG---GS 325 (423)
Q Consensus 272 ISp~el~~lL~~---~~~avLIDVRs~--------~Ef~~------------gHIPGA~~a~~~~~~nIPl~el~---~~ 325 (423)
++++++.+.+.+ +++.+|||+|+. ++|.. ||||||+ ++|+..+. ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578889988852 467999999987 89988 9999998 66653331 22
Q ss_pred HHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCC---CchHHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 326 l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~s---G~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
...++++++++++.+..+||+ ++++||+||.+ |.++.++++.|+.+|+++|++|+||+.+|.
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI~------~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGID------LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCCC------CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 234556667899999999984 88999999986 678999999999999999999999999996
No 40
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.68 E-value=1.2e-16 Score=131.82 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeC
Q 014526 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (423)
Q Consensus 283 ~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~ 362 (423)
++++++|||+|++.||..+||||++ ++|+..+....... + .+++++||+||.
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~~---------------~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWVR---------------I-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHhh---------------C-----CCCCCeEEEEeC
Confidence 4567999999999999999999998 88875542111000 0 135889999999
Q ss_pred CCch--HHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 363 sG~r--S~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
+|.+ |..+++.|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9987 6889999999999999999999999963
No 41
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.66 E-value=4e-17 Score=167.17 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=118.4
Q ss_pred ccCCCCCCcchHH--HhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchhhhhhhhhhhHHHHHHHHH
Q 014526 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (423)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~~--~~pvl~~~v~~g~~~~~~~~~~~~~ 264 (423)
++|++|++|+..+ .+.+|.+.+ |++|..+..+ ..++.|.++-++|+.+ ...++. +.....-+..+ -|.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~~g--vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~----~d~~~~~~~~~-~~~ 253 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCATAG--VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLS----YDALTATTRSF-RVG 253 (370)
T ss_pred CCCcHhhCCCCCccccCCCCccCC--cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEE----EECCCCEEEEE-Eec
Confidence 5799999997543 455787778 9999999999 8899999999998742 233432 22211111100 111
Q ss_pred hc-----------CCC-CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCC---CCcccccccccccCcccccchHHhh
Q 014526 265 YG-----------GYS-GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKL 329 (423)
Q Consensus 265 ~~-----------~y~-g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIP---GA~~a~~~~~~nIPl~el~~~l~~l 329 (423)
.. .|. -.++++++.+++. +++++|||||+++||+.+||| ||+ |+|+.++.......
T Consensus 254 ~~~~c~~~~~~~~~~~~~~~~~~el~~~l~-~~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~~ 324 (370)
T PRK05600 254 ADPARPLVTRLRPSYEAARTDTTSLIDATL-NGSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADIL 324 (370)
T ss_pred CCCCCCccccccCcchhcccCHHHHHHHHh-cCCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhhh
Confidence 11 011 1478999999985 456799999999999999998 477 89987764321000
Q ss_pred hcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCC-eEEecccHH
Q 014526 330 LRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (423)
Q Consensus 330 lk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~n-V~~L~GG~~ 390 (423)
. .+...+++ +|||||++|.||..+++.|+++||++ |++|.||+.
T Consensus 325 -------~---------~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 325 -------H---------ALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred -------h---------hccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 0 01112344 99999999999999999999999986 999999985
No 42
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.65 E-value=3.3e-16 Score=160.25 Aligned_cols=105 Identities=27% Similarity=0.385 Sum_probs=88.7
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
.|+++++.++++ ++.++||||++.||..||||||+ |+|+..+......+ +
T Consensus 4 ~is~~el~~~l~--~~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~--------------~------ 53 (376)
T PRK08762 4 EISPAEARARAA--QGAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETH--------------L------ 53 (376)
T ss_pred eeCHHHHHHHHh--CCCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhh--------------c------
Confidence 589999999985 35899999999999999999998 88875543332221 0
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCceeccccc
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~p~ 405 (423)
.+++++||+||++|.||..+++.|+.+||++|++|+|||.+|.++|+|+++.+..
T Consensus 54 ~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~ 108 (376)
T PRK08762 54 PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLL 108 (376)
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCC
Confidence 2578999999999999999999999999999999999999999999999875443
No 43
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.65 E-value=3.5e-16 Score=133.21 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=78.2
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 014526 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (423)
Q Consensus 271 ~ISp~el~~lL~~~-~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk 349 (423)
.|+++++.+++.++ ++.++||||++ ||..+|||||+ ++|+..+......+ ....+
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~----------~~~~~----- 58 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQL----------VQLLS----- 58 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHH----------HHHHh-----
Confidence 58999999998544 56789999999 99999999999 88887654433322 11112
Q ss_pred cCCCCceEEEEeC-CCchHHHHHHHHHH--------ccCCCeEEecccHHHHHHc
Q 014526 350 IVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (423)
Q Consensus 350 ~l~kd~~IIVyC~-sG~rS~~AA~~L~~--------~Gf~nV~~L~GG~~aW~aa 395 (423)
.+++++||+||. +|.|+..+++.|.+ .||++|++|.||+.+|.+.
T Consensus 59 -~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 59 -GSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred -cCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 247789999998 66799888887654 4999999999999999874
No 44
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.63 E-value=8.1e-16 Score=152.46 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=106.0
Q ss_pred ccCHHHHHHHHhCCC-----CcEEEEcCCh--hhHhhcCCCCCcccccccccccCccccc-ch--HHhhhcCchhhhhHH
Q 014526 271 DLSPKSTLELLRGKE-----NAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVG-GS--VKKLLRGGRELDDTL 340 (423)
Q Consensus 271 ~ISp~el~~lL~~~~-----~avLIDVRs~--~Ef~~gHIPGA~~a~~~~~~nIPl~el~-~~--l~~llk~~~~Le~~l 340 (423)
-++++.+.+.+. ++ ++.+++++.. ++|..+|||||+ .++...+. .. ..+++++++.+.+++
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~ 82 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLL 82 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence 488999988884 33 6677777665 899999999997 44443221 11 367889999999999
Q ss_pred HHHHHhhhccCCCCceEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHHHHHHcCCceecccccchhhhcchhhh
Q 014526 341 TAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNEVFT 416 (423)
Q Consensus 341 aalGI~~Lk~l~kd~~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~p~t~l~~~~~~~~ 416 (423)
.++||+ ++++||+|+..|. .+.+++|.|+.+|+++|++|+||+.+|.++|+|++...|....+.|+.+..
T Consensus 83 ~~~GI~------~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~ 153 (285)
T COG2897 83 GELGIR------NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYN 153 (285)
T ss_pred HHcCCC------CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCC
Confidence 999985 8999999997666 789999999999999999999999999999999998877777777544433
No 45
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.63 E-value=7e-16 Score=122.87 Aligned_cols=88 Identities=30% Similarity=0.440 Sum_probs=72.0
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCce
Q 014526 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (423)
Q Consensus 277 l~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~ 356 (423)
+.+++. +++..+||+|++.+|..+||||+. ++|...+..... . ...+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~~--------------~------~~~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERAA--------------L------LELDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHHH--------------h------hccCCCCe
Confidence 345553 678999999999999999999998 887654432210 0 11368999
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 357 IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
||+||..|.++..+++.|+..||+++++|.||+.+|.
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 46
>PRK01415 hypothetical protein; Validated
Probab=99.62 E-value=1.5e-15 Score=147.85 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=83.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
.|+|.++.++++ ++++++||||++.||..||||||+ ++|+..+.+..... +. ...
T Consensus 113 ~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~~-------~~---------~~~ 167 (247)
T PRK01415 113 YIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAWV-------QQ---------NQE 167 (247)
T ss_pred ccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHHH-------hh---------hhh
Confidence 599999999994 678999999999999999999999 88875543211110 00 011
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHcC
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaG 396 (423)
.+++++|++||.+|.||..++..|++.||++|++|.||+.+|.+..
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 3688999999999999999999999999999999999999998754
No 47
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.61 E-value=1.8e-15 Score=128.39 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCC
Q 014526 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (423)
Q Consensus 285 ~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG 364 (423)
....+||+|+++||..||||||+ |+|+.++...+..+. .+++++||+||++|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~--------------------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAV--------------------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhC--------------------CCCCCeEEEEeCCC
Confidence 45679999999999999999999 899866644333221 24678999999999
Q ss_pred chHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 365 ~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
.||..++..|+.+||++++++ ||+.+|.-
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999986 99999974
No 48
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.60 E-value=2e-15 Score=128.70 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=74.2
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHH
Q 014526 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (423)
Q Consensus 271 ~ISp~el~~lL~~~-----~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI 345 (423)
.|+++++.+++.++ ++.+|||||++ ||..+|||||+ |+|+..+...+..++ ..+.
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~----------~~~~- 62 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVY----------ALFS- 62 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHH----------HHhh-
Confidence 58999999999654 46899999999 99999999999 898866654433221 1111
Q ss_pred hhhccCCCCceEEEEeCC-CchHHHHHHHHH----HccC--CCeEEecccHHHHH
Q 014526 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MRAFLVQGGFQSWV 393 (423)
Q Consensus 346 ~~Lk~l~kd~~IIVyC~s-G~rS~~AA~~L~----~~Gf--~nV~~L~GG~~aW~ 393 (423)
..+.++||+||.+ |.||..++..|. +.|| .++++|.||+.+|.
T Consensus 63 -----~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 63 -----LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred -----hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 1356789999997 578888776644 4475 78999999999995
No 49
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.58 E-value=5e-15 Score=144.98 Aligned_cols=102 Identities=13% Similarity=0.181 Sum_probs=82.1
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHH
Q 014526 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (423)
Q Consensus 270 g~ISp~el~~lL~~~-----~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalG 344 (423)
..+++.++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.+...++ ...+
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l-------~~~~---- 170 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEAL-------AAHR---- 170 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHH-------Hhhh----
Confidence 369999999988542 34899999999999999999999 99986664322221 0000
Q ss_pred HhhhccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHc
Q 014526 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (423)
Q Consensus 345 I~~Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aa 395 (423)
. ..++++|++||.+|.||..++..|++.||++|++|.||+.+|.+.
T Consensus 171 ----~-~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 171 ----A-DLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ----h-hcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 0 127889999999999999999999999999999999999999874
No 50
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.57 E-value=6.5e-15 Score=125.74 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=67.2
Q ss_pred CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCC
Q 014526 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (423)
Q Consensus 285 ~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG 364 (423)
.+-++||+|+++||+.+|||||+ |+|+.++...+..+ + .+++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~l--------------~------~~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIATA--------------V------PDKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHhc--------------C------CCCCCeEEEEeCCC
Confidence 45579999999999999999999 89876554333221 1 24678999999999
Q ss_pred chHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 365 ~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
.||..++..|..+||+++++ .||+.+|.-
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999974
No 51
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.56 E-value=9.4e-15 Score=146.81 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=82.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
.++++++.+++. +++++|||||++.||..||||||+ ++|+..+.+....+ .. .++
T Consensus 113 ~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~l-------~~---~~~------ 167 (314)
T PRK00142 113 YLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPWV-------EE---NLD------ 167 (314)
T ss_pred ccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHHH-------HH---hcC------
Confidence 699999999984 678999999999999999999998 88876654322111 10 111
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHHc
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aa 395 (423)
..++++||+||.+|.||..++..|+..||++|++|+||+.+|...
T Consensus 168 ~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 168 PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 348899999999999999999999999999999999999999763
No 52
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.46 E-value=2.2e-13 Score=138.53 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=79.7
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccch--HHhhhcCc--------------hhh
Q 014526 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG--------------REL 336 (423)
Q Consensus 273 Sp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~--l~~llk~~--------------~~L 336 (423)
...++.+++ .++.+|||||++.||..||||||+ |+|+....++ ++.+.+.. ..+
T Consensus 4 ~~~~~~~~~--~~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALF--LNDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHH--hCCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 456677765 357899999999999999999999 8887432211 11111110 011
Q ss_pred hhHHHHHHHhhhccCC-CCceEEEEe-CCCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCceec
Q 014526 337 DDTLTAAVIRNLKIVQ-DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (423)
Q Consensus 337 e~~laalGI~~Lk~l~-kd~~IIVyC-~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~ 401 (423)
.+.+... ++..+ ++++||+|| ++|.||..+++.|+..|| ++++|.||+.+|++.+++...
T Consensus 74 ~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 74 AAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 1111111 11122 788999999 578899999999999999 699999999999998876654
No 53
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.45 E-value=4.4e-13 Score=117.16 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=74.4
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchH--------HhhhcCchhhhhHHH
Q 014526 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--------KKLLRGGRELDDTLT 341 (423)
Q Consensus 271 ~ISp~el~~lL~~~-~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l--------~~llk~~~~Le~~la 341 (423)
.|+|+++.++++.+ ++.++||+|++.+|..+|||||+ ++|++.+..+- ..++..+...+.
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 69 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDRDR--- 69 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHHHH---
Confidence 37899999999643 57999999999999999999998 77765432110 001111111111
Q ss_pred HHHHhhhccCCCCceEEEEeCCCch---------HHHHHHHHHH--ccCCCeEEecccHHHHHH
Q 014526 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 342 alGI~~Lk~l~kd~~IIVyC~sG~r---------S~~AA~~L~~--~Gf~nV~~L~GG~~aW~a 394 (423)
+.. .++++|||||..|.+ +..+++.|.. .|+.+|++|+||+.+|.+
T Consensus 70 ------l~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 70 ------LRR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred ------Hhc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 111 167899999998865 5566667776 477899999999999976
No 54
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.43 E-value=2.5e-13 Score=136.44 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=72.7
Q ss_pred CcEEEEcCChhhHhhcCCCCCcccccccccccCcccccc--hHHhhhcCchhh----------hhHHHHHHHhhh-ccCC
Q 014526 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--SVKKLLRGGREL----------DDTLTAAVIRNL-KIVQ 352 (423)
Q Consensus 286 ~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~--~l~~llk~~~~L----------e~~laalGI~~L-k~l~ 352 (423)
+.+|||||++.||.+||||||+ |+|+....+ .++...+..... ...+.. .+..+ +..+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~-~i~~~~~~~~ 72 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAA-HVEQWRAFAD 72 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHH-HHHHHHhhcC
Confidence 4689999999999999999999 898843221 111111110000 000111 01111 1124
Q ss_pred CCceEEEEeC-CCchHHHHHHHHHHccCCCeEEecccHHHHHHcCCceecc
Q 014526 353 DRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (423)
Q Consensus 353 kd~~IIVyC~-sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~ 402 (423)
++.+||+||. +|.||..+++.|+.+|| ++++|.||+.+|...+++....
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 5556999995 78899999999999999 6999999999999998877654
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.08 E-value=1.6e-10 Score=122.28 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=66.0
Q ss_pred HHHHHHHhCCCCcEEEEcCChhhHhhcCCCC----CcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 275 KSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 275 ~el~~lL~~~~~avLIDVRs~~Ef~~gHIPG----A~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
.+..+.+ .++.++||||+++||+.+|||| ++ |+|+.++......
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~~---------------------- 445 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFGD---------------------- 445 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHhh----------------------
Confidence 3444444 3578999999999999999999 87 8887665433221
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecc
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQG 387 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~G 387 (423)
++++++||+||++|.||..++..|+.+||++|++|.+
T Consensus 446 l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 446 LDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 3678899999999999999999999999999998864
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.03 E-value=7.4e-10 Score=109.31 Aligned_cols=122 Identities=18% Similarity=0.293 Sum_probs=96.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCC---------hhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHH
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRH---------EDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs---------~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~la 341 (423)
-+++..+.+++. ++..+|||..- ..||..-|||||. +++...+.. -....+.+++.++.+++-..
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~---~fdld~~~~--~s~~~~~~lp~~e~Fa~y~~ 79 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIPGAS---HFDLDIISY--PSSPYRHMLPTAEHFAEYAS 79 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCCCce---eeecccccc--CCCcccccCccHHHHHHHHH
Confidence 467788888885 47899999852 5678888999875 444433322 12334566677777788888
Q ss_pred HHHHhhhccCCCCceEEEEeC--CCc-hHHHHHHHHHHccCCCeEEecccHHHHHHcCCceecccc
Q 014526 342 AAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (423)
Q Consensus 342 alGI~~Lk~l~kd~~IIVyC~--sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW~aaGLPv~~~~p 404 (423)
.+|+ +++..+|||++ .|+ .|.+++|.++..|+++|+.|.||+.+|+..|+|+.+.+.
T Consensus 80 ~lGi------~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 80 RLGV------DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred hcCC------CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 8887 48889999999 777 688999999999999999999999999999999988764
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.92 E-value=1.2e-09 Score=108.54 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=78.0
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccc---cchHHhhhcCchhhhhHHHHHHHhh
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV---GGSVKKLLRGGRELDDTLTAAVIRN 347 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el---~~~l~~llk~~~~Le~~laalGI~~ 347 (423)
-|+|+|+.+++ .+++.++||+|...||.-||..||+ +.+...| +.++....
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v~~~~----------------- 167 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWVEENL----------------- 167 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHHHHHH-----------------
Confidence 48899999999 5789999999999999999999998 5444333 33332211
Q ss_pred hccCCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 348 Lk~l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
..-++++|+.||.+|.|...+..+|+..||++||.|+||+-.+..
T Consensus 168 --~~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 168 --DLLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred --HhccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 013677999999999999999999999999999999999987754
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.69 E-value=4.8e-08 Score=96.60 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=79.7
Q ss_pred CCcEEEEcCChhhH-----------hhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCC
Q 014526 285 ENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (423)
Q Consensus 285 ~~avLIDVRs~~Ef-----------~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~k 353 (423)
.++..||.|+..+| ..|||||++ |+|+.++...-..+ +.+.++...+...|+. .
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~-k~~edl~~~f~~~~l~------~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFI-KPAEDLKHLFAQKGLK------L 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhccccccc-CCHHHHHHHHHhcCcc------c
Confidence 46889999998888 347999999 99998776554433 4478888888888874 6
Q ss_pred CceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHHHHH
Q 014526 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 354 d~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
++|+|+-|..|..+...+-.|...| .++.+|+|+|.+|.-
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 789999999999985
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=2.3e-07 Score=93.49 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=73.0
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHH
Q 014526 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (423)
Q Consensus 270 g~ISp~el~~lL~~~-----~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalG 344 (423)
..|+|+.+..++++. ..++|||+|-|.||..|||+||+ |++..+....+. ....-+
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f---~~~~~~-------- 216 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF---LLKDGV-------- 216 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh---cccccc--------
Confidence 369999999999652 23679999999999999999998 877544332221 100000
Q ss_pred HhhhccCCCCceEEEEeCCC-chHHHHHHHHHH------------ccCCCeEEecccHHHHHHc
Q 014526 345 IRNLKIVQDRSKVIVMDADG-TRSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 395 (423)
Q Consensus 345 I~~Lk~l~kd~~IIVyC~sG-~rS~~AA~~L~~------------~Gf~nV~~L~GG~~aW~aa 395 (423)
+...+...+||||..- .|...+|+.|+. +-|..+|+|+||+..|-..
T Consensus 217 ----~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 217 ----PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ----ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0011345789999854 488999999984 3456899999999999764
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.08 E-value=0.0012 Score=66.90 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=68.9
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHH
Q 014526 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (423)
Q Consensus 270 g~ISp~el~~lL~~~-----~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalG 344 (423)
.+|+++-++.++++. -+++|||+|-+.||..|||-+|+ ||.-. ..+.-+++.
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~---~~l~~~F~h------------ 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISST---KKLGLLFRH------------ 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchH---HHHHHHHHh------------
Confidence 479999999998543 24789999999999999999988 66421 111111110
Q ss_pred HhhhccCCCCceEEEEeCCC-chHHHHHHHHHHc------------cCCCeEEecccHHHHHH
Q 014526 345 IRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKL------------GVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 345 I~~Lk~l~kd~~IIVyC~sG-~rS~~AA~~L~~~------------Gf~nV~~L~GG~~aW~a 394 (423)
|.+..-+-+|+.|... .|+.+.|..|+.. -|..||+|+||+.....
T Consensus 299 ----kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 299 ----KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred ----ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 1112345689999854 5999999988654 24579999999988765
No 61
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=96.12 E-value=0.00079 Score=55.30 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=35.9
Q ss_pred ccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 014526 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (423)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf 237 (423)
+||||||+|+......+|++.| |++|+-+.++ ..++.|.|+-++|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~~G--Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAEAG--VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSSTS---B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccccc--cccchHHHHH-HHHHHHHHHHHHhc
Confidence 6899999999977888999999 9999999999 99999999999985
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.23 E-value=0.027 Score=56.77 Aligned_cols=95 Identities=25% Similarity=0.231 Sum_probs=56.9
Q ss_pred CCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccc--hHHhhhcC---------------chhhhhHHHHHHHhh
Q 014526 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--SVKKLLRG---------------GRELDDTLTAAVIRN 347 (423)
Q Consensus 285 ~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~--~l~~llk~---------------~~~Le~~laalGI~~ 347 (423)
.+..+||||.|.||..||.|++. |.|.-.=.+ .+..-.+. .+-..+.+.+.
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~as---- 81 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEAS---- 81 (334)
T ss_pred cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHH----
Confidence 46789999999999999999987 665411000 11100000 00011111111
Q ss_pred hccCCCCceEEEEeCCCc-hHHHHHHHH-HHccCCCeEEecccHHHHH
Q 014526 348 LKIVQDRSKVIVMDADGT-RSKGIARSL-RKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 348 Lk~l~kd~~IIVyC~sG~-rS~~AA~~L-~~~Gf~nV~~L~GG~~aW~ 393 (423)
|....+.++-++|..|. ||...+.+| ...|++ .--+.||+.+.+
T Consensus 82 -k~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 82 -KAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred -HHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 12234567777797665 999999999 778885 445669987654
No 63
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.72 E-value=0.035 Score=56.85 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=72.6
Q ss_pred ccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCCC--CCCcchhhhhhhhhhhH----------
Q 014526 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATL---------- 256 (423)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~~--~~pvl~~~v~~g~~~~~---------- 256 (423)
+||++|++|++++.-.+|.+.+ +++|+.+.++ ..++.|.++-++|... ..-++.+-.+-.....+
T Consensus 164 ~pC~~Cl~~~~~~~~~~c~~~g--v~~p~~~~i~-~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 164 TPCLRCLLQSIPLGGATCDTAG--IISPAVQIVA-SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCeEeecCCCCCCCCCCccCC--cccHHHHHHH-HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 5899999998776556788888 9999998888 8888889887777532 11222111111000000
Q ss_pred ----------HHHHH------HHHhc-------CCCCccCHHHHHHHHhC-----CCCcEEEEcCChhhHhhcCCCCCc
Q 014526 257 ----------WIFYW------WWTYG-------GYSGDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (423)
Q Consensus 257 ----------~~~~~------~~~~~-------~y~g~ISp~el~~lL~~-----~~~avLIDVRs~~Ef~~gHIPGA~ 307 (423)
++.+- .+..+ +....++++++.+.++. +.+..+||||++. |+-.++|+-+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 00000 00000 11236899999888832 3578999999998 9999999865
No 64
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=92.45 E-value=0.17 Score=43.90 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=39.2
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCC------cccccccccccCcccccchHHhhhcCchhhhhHHHHH
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA------~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laal 343 (423)
++++++++.++.+ ..=-.||+.|+..|-. +-|.. ....-+.|.++|+..- .+ +++.+++....+
T Consensus 13 ~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~-----~~~~v~~f~~~l 82 (110)
T PF04273_consen 13 GQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGG--AI-----TEEDVEAFADAL 82 (110)
T ss_dssp CS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TT--T-------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCC--CC-----CHHHHHHHHHHH
Confidence 6899999998874 4445799999876532 22221 1122344556775321 11 111222222111
Q ss_pred HHhhhccCCCCceEEEEeCCCchHHHHHH
Q 014526 344 VIRNLKIVQDRSKVIVMDADGTRSKGIAR 372 (423)
Q Consensus 344 GI~~Lk~l~kd~~IIVyC~sG~rS~~AA~ 372 (423)
. ...+||.+||++|.|+...+.
T Consensus 83 ~-------~~~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 83 E-------SLPKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp H-------TTTTSEEEE-SCSHHHHHHHH
T ss_pred H-------hCCCCEEEECCCChhHHHHHH
Confidence 1 134699999999999865543
No 65
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=92.43 E-value=0.57 Score=41.61 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=58.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCc------ccccccccccCcccccchHHhhhcCchhhhhHHHHH
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~------~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laal 343 (423)
+.++++++..+.+ ..=-.+||.|+..|.... |... ......+.++|+.. ..+ ++..+......+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~~--p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEESQ--PDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCCC--CCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHHH
Confidence 5799999987753 344579999998774322 2210 01123444666421 100 111222211111
Q ss_pred HHhhhccCCCCceEEEEeCCCchHHHHHHH-HHHccCCCeEEecccHHHHHHcCCceec
Q 014526 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARS-LRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (423)
Q Consensus 344 GI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~-L~~~Gf~nV~~L~GG~~aW~aaGLPv~~ 401 (423)
. ..+.||++||++|.|+..++.. +...|...-.. +..=++.|+.++.
T Consensus 83 ~-------~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 G-------AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred H-------hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 2457999999999998776544 33446532111 1222556666654
No 66
>PRK08223 hypothetical protein; Validated
Probab=87.72 E-value=0.33 Score=48.97 Aligned_cols=53 Identities=17% Similarity=-0.002 Sum_probs=40.0
Q ss_pred eEEEeeccCCCCCCcc---hHH----------Hhhhhhhhhhhhc----------------ccccchHHHHHHHHHHHHH
Q 014526 183 FVVYYYGTTKESLPPE---IRD----------ALNLYEDRAVKLW----------------RPVGSALQQVSVAIEGLER 233 (423)
Q Consensus 183 ~~~~~~G~~~~~l~p~---~~~----------~~~~~e~~~~~v~----------------~p~g~~~~q~~~~ie~l~~ 233 (423)
++++..||||+|++|+ ..+ .+-+|.+.+ ++ +|+++.++ ..++.|.++-
T Consensus 160 ~v~~p~~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~g--vl~~~~~~~~~~~~~p~~g~~~g~~g-~~~a~E~ik~ 236 (287)
T PRK08223 160 LVFDPGGMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRG--YLADPSRVDLENRTGPSTGLACQLCA-GVVATEVLKI 236 (287)
T ss_pred EEEcCCCCchhhhcCCCCCCCchhhhcccCCcCCCccccCC--ccccccccccccccCCCccchHHHHH-HHHHHHHHHH
Confidence 4444469999999987 433 556899999 77 77777777 7788888888
Q ss_pred hcCCC
Q 014526 234 SLGFD 238 (423)
Q Consensus 234 ~lgf~ 238 (423)
++|..
T Consensus 237 l~g~g 241 (287)
T PRK08223 237 LLGRG 241 (287)
T ss_pred HhCCC
Confidence 88753
No 67
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=86.52 E-value=0.26 Score=53.82 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=56.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~ 350 (423)
+|+++++..+ ....++|.|...||.++|+++++ |+|+..-.....++..- + ++.
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~l----~------~~~---- 676 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRFL----P------GIV---- 676 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhcc----h------HhH----
Confidence 3555554443 34679999999999999999999 88876333333332111 1 110
Q ss_pred CCCCceEEEEeCCCchHHHHHHHHHHccCCCeEEecccHHH
Q 014526 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQS 391 (423)
Q Consensus 351 l~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~~L~GG~~a 391 (423)
-..+..++++......+.+....+..+-+.+...+.+|+++
T Consensus 677 ~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 677 CSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred HhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 01445555554433344444444444557778888898883
No 68
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=81.86 E-value=1.3 Score=44.65 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=53.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHh-hhcc
Q 014526 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR-NLKI 350 (423)
Q Consensus 272 ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~-~Lk~ 350 (423)
++..++.+.+. ..+.+++|.|+ +..||.+|+ ++.++.+.. +++.+..--+..++-..... ..+.
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalml--rrl~~g~l~~ra~~p~~~d~~~~~~ 70 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALML--RRLTGGNLPVRALFPRSCDDKRFPA 70 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHH--HHHhCCCCcceeccCCccccccccc
Confidence 45666666663 56799999999 456788776 333332211 01111111111100000000 0000
Q ss_pred CCCCceEEEEeCCCch------HH----HHHHHHHHccCCCeEEecccHHHHHH
Q 014526 351 VQDRSKVIVMDADGTR------SK----GIARSLRKLGVMRAFLVQGGFQSWVK 394 (423)
Q Consensus 351 l~kd~~IIVyC~sG~r------S~----~AA~~L~~~Gf~nV~~L~GG~~aW~a 394 (423)
-.+...+|.|+.+... +. ..-+.++..|+ .++.|.|||...+.
T Consensus 71 ~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 71 RCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred cCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 0134678999876210 11 12244577788 69999999987665
No 69
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=81.72 E-value=1.4 Score=39.16 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHH----hhhhcccCcce--------EEEee------------ccCCCCCCcchHHHhhhhhhhhhhhccc
Q 014526 161 AAVDVLRNTIVA----LEESMTNGASF--------VVYYY------------GTTKESLPPEIRDALNLYEDRAVKLWRP 216 (423)
Q Consensus 161 ~~~d~l~~~~~~----~~~~~~~~~~~--------~~~~~------------G~~~~~l~p~~~~~~~~~e~~~~~v~~p 216 (423)
|+.++|++.+.. -.-.|.|.|++ ..|.= ||++..++-++....+ .......+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~----~~~~~~~~ 76 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLD----EAGFEESM 76 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhC----cCCCCCCC
Confidence 356778887752 23457888865 44543 8999888776654331 11112222
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhh--hhHHHHHHHHHh
Q 014526 217 VGSALQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTS--ATLWIFYWWWTY 265 (423)
Q Consensus 217 ~g~~~~q~~~~ie~l~~~lgf~~~~pvl~~~v~~g~~--~~~~~~~~~~~~ 265 (423)
... .+.++.+.+.+|+.++++|+ +|+.. +...+.+.||..
T Consensus 77 ~p~-----~~~~~~~~~~~GI~~~~~vV----vY~~~~~~g~~A~r~~~~l 118 (138)
T cd01445 77 EPS-----EAEFAAMFEAKGIDLDKHLI----ATDGDDLGGFTACHIALAA 118 (138)
T ss_pred CCC-----HHHHHHHHHHcCCCCCCeEE----EECCCCCcchHHHHHHHHH
Confidence 222 12344555668999999995 45532 234455555543
No 70
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=81.28 E-value=7.3 Score=35.27 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=44.7
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcC---CCCCcccccccccccCccc--------c--------------cc
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDG---IPDLRRGARFRYASVYLPE--------V--------------GG 324 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gH---IPGA~~a~~~~~~nIPl~e--------l--------------~~ 324 (423)
..+++++...+. .-.=-.|||.|++.|..... ++|.. +.++|+.. + ..
T Consensus 28 ~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~~~p~~~~~g~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (164)
T PF13350_consen 28 SNLTEADLERLR-ELGIRTIIDLRSPTERERAPDPLIDGVQ------YVHIPIFGDDASSPDKLAELLQSSADAPRGMLE 100 (164)
T ss_dssp TT--HHHHHHHH-HTT--EEEE-S-HHHHHHHS----TT-E------EEE--SS-S-TTH----------HHHHHHHHHH
T ss_pred CcCCHHHHHHHH-hCCCCEEEECCCccccccCCCCCcCCce------eeeecccccccccccccccccccccchhhHHHH
Confidence 468899887776 34456899999999987652 23321 22333210 0 00
Q ss_pred hHHhhhcC-chhhhhHHHHHHHhhhccCCCCceEEEEeCCCc-hHH-HHHHHHHHccCC
Q 014526 325 SVKKLLRG-GRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSK-GIARSLRKLGVM 380 (423)
Q Consensus 325 ~l~~llk~-~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG~-rS~-~AA~~L~~~Gf~ 380 (423)
....++.. ...+.+++..+-- ++ .+++++|..|. |.. .++-.|..+|..
T Consensus 101 ~Y~~~~~~~~~~~~~~~~~l~~------~~-~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 101 FYREMLESYAEAYRKIFELLAD------AP-GPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHGGGSTHHHHHHHHHHHH-------TT---EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHhhhHHHHHHHHHhcc------CC-CcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 11122222 2344444433321 23 69999999998 654 455667778875
No 71
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=81.12 E-value=0.21 Score=50.83 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=39.8
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhh
Q 014526 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (423)
Q Consensus 268 y~g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~ll 330 (423)
|..--+|+++.+.+. ....++|+|....|..+||||++ ++|...+....+++.
T Consensus 12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 333345778877774 35678999999999999999999 888766666655553
No 72
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=81.06 E-value=3.5 Score=35.39 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=19.1
Q ss_pred CCceEEEEeCCCc-hHHHH--HHHHHHccC
Q 014526 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (423)
Q Consensus 353 kd~~IIVyC~sG~-rS~~A--A~~L~~~Gf 379 (423)
.+.+|+|+|..|. ||..+ +..++..|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999997 77643 444555554
No 73
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=75.88 E-value=10 Score=40.80 Aligned_cols=91 Identities=14% Similarity=0.215 Sum_probs=49.7
Q ss_pred CcEEEEcCChhhHhhcCCCCCcccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCC-----CCceEEEE
Q 014526 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ-----DRSKVIVM 360 (423)
Q Consensus 286 ~avLIDVRs~~Ef~~gHIPGA~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~-----kd~~IIVy 360 (423)
+..++|.|+.++|..||+-.|. |.. ..-++.+|..++..+..+--.--..+. .+.++.++
T Consensus 326 rFFiVDcRpaeqynaGHlstaF--------hlD-------c~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm 390 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAF--------HLD-------CVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM 390 (669)
T ss_pred EEEEEeccchhhcccccchhhh--------ccc-------HHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe
Confidence 4579999999999999998764 321 122344454444433322110000011 23455554
Q ss_pred eCCCch------HHHHHHHHHHccCCCeEEecccHHHHH
Q 014526 361 DADGTR------SKGIARSLRKLGVMRAFLVQGGFQSWV 393 (423)
Q Consensus 361 C~sG~r------S~~AA~~L~~~Gf~nV~~L~GG~~aW~ 393 (423)
.+|.. -...|-.|++ +-..|..+.||+....
T Consensus 391 -GsGr~EED~YmnMviA~FlQK-nk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 391 -GSGRDEEDNYMNMVIAMFLQK-NKLYVSFVQGGYKKLH 427 (669)
T ss_pred -ccCcchHHHHHHHHHHHHHhc-CceEEEEecchHHHHH
Confidence 44531 2334444444 4446999999998665
No 74
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=70.93 E-value=3.5 Score=40.06 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.6
Q ss_pred cCcceEEEee--ccCCCCCCcchHH--Hhh-hhhhhhhhhcccccchHHHHHHHHHHHHHhcCCC
Q 014526 179 NGASFVVYYY--GTTKESLPPEIRD--ALN-LYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFD 238 (423)
Q Consensus 179 ~~~~~~~~~~--G~~~~~l~p~~~~--~~~-~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~ 238 (423)
.|.-+++... ++|++|++|+..+ .+. .|++.+ |++|..+..+ ..++++.++-+.|..
T Consensus 157 ~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~g--v~~~~~~~~~-~~~~~~~~k~~~g~~ 218 (254)
T COG0476 157 EGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAG--VLGPLVGVVG-SLQALEAIKLLTGIG 218 (254)
T ss_pred eEEEEEEecCCCCCcccccCCCCCCccccccccccCC--ccccccchhh-hHHHHHHHHHhcCCC
Confidence 3444455555 6899999999986 233 489999 9999999999 899999988888854
No 75
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.81 E-value=11 Score=33.73 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=48.0
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCCC------cccccccccccCcc--cccchHHhhhcCchhhhhHH
Q 014526 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLP--EVGGSVKKLLRGGRELDDTL 340 (423)
Q Consensus 269 ~g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPGA------~~a~~~~~~nIPl~--el~~~l~~llk~~~~Le~~l 340 (423)
.++++++++.++.. ..=..+|--|+..|= -.=|+. ....-..|.+||.. .+.+ ..++..-
T Consensus 13 sgQi~~~D~~~iaa-~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~---------~dV~~f~ 80 (130)
T COG3453 13 SGQISPADIASIAA-LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE---------ADVEAFQ 80 (130)
T ss_pred cCCCCHHHHHHHHH-hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCH---------HHHHHHH
Confidence 46899999988863 333468889985443 122321 11122344566652 2221 1122212
Q ss_pred HHHHHhhhccCCCCceEEEEeCCCchHHHHHHH
Q 014526 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (423)
Q Consensus 341 aalGI~~Lk~l~kd~~IIVyC~sG~rS~~AA~~ 373 (423)
.++. .-+.||..||++|.||...+..
T Consensus 81 ~Al~-------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 81 RALD-------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HHHH-------HhCCCEEeeecCCchHHHHHHH
Confidence 2222 2567999999999998776543
No 76
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=68.67 E-value=3.6 Score=40.22 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=35.4
Q ss_pred ccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCC
Q 014526 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFD 238 (423)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~ 238 (423)
++|++|++|+..+.-..|.+.+ +++|.-+.++ ..++.|.++-++|+.
T Consensus 171 ~~c~~c~~~~~~~~~~~~~~~g--v~~~~~~~~~-~~~a~e~ik~l~g~~ 217 (245)
T PRK05690 171 EPCYRCLSRLFGENALTCVEAG--VMAPLVGVIG-SLQAMEAIKLLTGYG 217 (245)
T ss_pred CceeeeccCCCCCCCCCcccCC--ccchHHHHHH-HHHHHHHHHHHhCCC
Confidence 3799999987654323677777 8888888887 777888888777753
No 77
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=67.72 E-value=3.1 Score=37.31 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=3.3
Q ss_pred HHHHHhhhh
Q 014526 168 NTIVALEES 176 (423)
Q Consensus 168 ~~~~~~~~~ 176 (423)
..+..+++.
T Consensus 111 ~~~~~~~~~ 119 (202)
T PF01442_consen 111 EEVDELEES 119 (202)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 78
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=65.66 E-value=3 Score=42.83 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=34.3
Q ss_pred eccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 014526 188 YGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (423)
Q Consensus 188 ~G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf 237 (423)
.+||++|++|++...-.+|+..+ +++|+.+.+. ..++.|.++-++|.
T Consensus 163 ~tpC~~Cl~~~~p~~~~~c~~~G--vl~p~v~~ia-slqa~EalK~L~g~ 209 (338)
T PRK12475 163 KTPCLRCLMEHVPVGGATCDTAG--IIQPAVQIVV-AYQVTEALKILVED 209 (338)
T ss_pred CCCCHHHhcCCCCCCCCCCccCC--cCchHHHHHH-HHHHHHHHHHHhCC
Confidence 35899999987654334677777 8888887776 77777887766664
No 79
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=62.73 E-value=5.6 Score=38.85 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=32.2
Q ss_pred ccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 014526 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (423)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf 237 (423)
+||++|+.+..+.-...|.+.+ +++|.-+.++ ..++.|.++-++|+
T Consensus 163 ~~c~~C~~~~~~~~~~~~~~~g--v~~p~~~~~~-~~~a~e~ik~l~g~ 208 (240)
T TIGR02355 163 EPCYRCLSRLFGENALSCVEAG--VMAPVVGVVG-SLQAMEAIKVLAGI 208 (240)
T ss_pred CCccccccccCCCCCCCccccC--ccchHHHHHH-HHHHHHHHHHHhCC
Confidence 3799999665543223466666 8888888887 67777777777764
No 80
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=62.58 E-value=14 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=21.3
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccCC
Q 014526 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (423)
Q Consensus 352 ~kd~~IIVyC~sG~-rS~~--AA~~L~~~Gf~ 380 (423)
..+.+|+|+|..|. ||.. +++.++..|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 46789999999996 7764 34556667763
No 81
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=62.45 E-value=4.4 Score=41.94 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=35.9
Q ss_pred ccCCCCCCcchHH--HhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCC
Q 014526 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (423)
Q Consensus 189 G~~~~~l~p~~~~--~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf 237 (423)
++|++|++|+.++ ...+|.+.| +++|..+.++ ..++.|.++-++|+
T Consensus 277 ~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~~-~~~a~e~~k~l~g~ 324 (376)
T PRK08762 277 APCYRCLFPEPPPPELAPSCAEAG--VLGVLPGVIG-LLQATEAIKLLLGI 324 (376)
T ss_pred CCCHhhcCCCCCCcccCCCCccCC--cchhhHHHHH-HHHHHHHHHHHhCC
Confidence 5899999886543 345788888 8899888887 77888888888874
No 82
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=60.56 E-value=5.8 Score=37.49 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=28.9
Q ss_pred ccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHH
Q 014526 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLE 232 (423)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~ 232 (423)
++|++|++++..+....|...+ +++|..+..+ ..++.|.++
T Consensus 160 ~~c~~c~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~a~e~~k 200 (202)
T TIGR02356 160 GPCLRCLFPDIADTGPSCATAG--VIGPVVGVIG-SLQALEALK 200 (202)
T ss_pred CCChhhcCCCCcccCCCCccCC--ccchHHHHHH-HHHHHHHHH
Confidence 4899999998555555666566 8888777776 555655543
No 83
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=58.97 E-value=21 Score=36.47 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=26.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhHhh---cCCC
Q 014526 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (423)
Q Consensus 271 ~ISp~el~~lL~~~~~avLIDVRs~~Ef~~---gHIP 304 (423)
.+...++.+.+. ..++.+||+|+..+|.. ||||
T Consensus 137 g~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCC
Confidence 356678888885 45789999999999987 8888
No 84
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=57.64 E-value=12 Score=33.86 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCCceEEEEe-C----CCchHHHHHHHHHHccCCCeEEecccHHH
Q 014526 352 QDRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQS 391 (423)
Q Consensus 352 ~kd~~IIVyC-~----sG~rS~~AA~~L~~~Gf~nV~~L~GG~~a 391 (423)
+++.++++++ . .|..-..++..|+++|..++.+|+||-..
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 3555665555 4 35667888999999999999999999654
No 85
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=57.54 E-value=7.5 Score=33.89 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.2
Q ss_pred EEEEeCCCc-hHHHHHHHHHHc----cCCCeEEecccHHHH
Q 014526 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (423)
Q Consensus 357 IIVyC~sG~-rS~~AA~~L~~~----Gf~nV~~L~GG~~aW 392 (423)
|+|+|.+.. ||..|-..|+++ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689998765 898888888777 667889999998766
No 86
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=54.51 E-value=33 Score=28.43 Aligned_cols=60 Identities=7% Similarity=0.195 Sum_probs=33.6
Q ss_pred hhhhhhhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhh
Q 014526 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRV 129 (423)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (423)
.|..+..++++++..+.+.....+.+..+-+++.++.+...+..+...+.+-+..+...+
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 65 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQT 65 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666555555555555555554444444444444433
No 87
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=52.26 E-value=22 Score=32.60 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCeEE--ecc----------cHHHHHHcCCceecccc
Q 014526 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQG----------GFQSWVKEGLRIKELKS 404 (423)
Q Consensus 352 ~kd~~IIVyC~sG~---rS~~AA~~L~~~Gf~nV~~--L~G----------G~~aW~aaGLPv~~~~p 404 (423)
++..+|+++|..|+ ....+|+.|...|++ |.+ +.. -+..+++.|.++....+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 89 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDS 89 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCC
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccc
Confidence 57889999999987 456789999999995 554 322 13455677777765433
No 88
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=51.66 E-value=44 Score=30.75 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=34.1
Q ss_pred HHHhhhccCCCCceEEEEeCCCc--hHHHHHHHHHH---ccCCCeEEecccHHHH
Q 014526 343 AVIRNLKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW 392 (423)
Q Consensus 343 lGI~~Lk~l~kd~~IIVyC~sG~--rS~~AA~~L~~---~Gf~nV~~L~GG~~aW 392 (423)
-+...++.++++..+|+.|..|. .|...|..|.. .|..++..+.||-.++
T Consensus 56 E~~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 56 EGERILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHHHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34444566778999999999997 67778887755 6888899999986544
No 89
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.08 E-value=73 Score=34.98 Aligned_cols=145 Identities=23% Similarity=0.355 Sum_probs=80.3
Q ss_pred hhhhhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhh-hhHhHHHHHhhhhhhccccCCCcCCCccccc--
Q 014526 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKS-TSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS-- 148 (423)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-- 148 (423)
...+..++-++..|+--++..--+ |.=+...||+++.-. |.|+ |.+.. .++-.+|- -++.+.++.+|+
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNVA~eiA----~~LcEsV~--a~Legkkv~sfs~V 341 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNVAAEIA----EKLCESVA--ASLEGKKVGSFSTV 341 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--HhhhhhHHHH----HHHHHHHH--HHhhhcccccchHH
Confidence 444556777777776633332222 444666666666542 1222 12222 22333332 245677787887
Q ss_pred -chhHHHhhhc------cchhHHHHHHHHHHhhhhcccCcceEEEeec------------cCCCCCCcchHHHhhhhhhh
Q 014526 149 -TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG------------TTKESLPPEIRDALNLYEDR 209 (423)
Q Consensus 149 -~~~~~~~~~a------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~G------------~~~~~l~p~~~~~~~~~e~~ 209 (423)
+..++|...| +.+++|.||.-+.+=+. .+||++-.-| -||-.|.-.++=++.-|.-
T Consensus 342 ~~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~~----krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDT- 416 (587)
T KOG0781|consen 342 ESTVKEALRDALVQILTPQRSVDLLRDIMSARRR----KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDT- 416 (587)
T ss_pred HHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc----CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccc-
Confidence 4455555444 66899999998876554 4899988877 2344444444444544442
Q ss_pred hhhhcccccchHHHHHHHHHHHHHhcC
Q 014526 210 AVKLWRPVGSALQQVSVAIEGLERSLG 236 (423)
Q Consensus 210 ~~~v~~p~g~~~~q~~~~ie~l~~~lg 236 (423)
|+ -|+.+|..--.+.|.++.|
T Consensus 417 ----FR--sGAvEQLrtHv~rl~~l~~ 437 (587)
T KOG0781|consen 417 ----FR--SGAVEQLRTHVERLSALHG 437 (587)
T ss_pred ----hh--hhHHHHHHHHHHHHHHhcc
Confidence 22 3456666666666665555
No 90
>PLN02727 NAD kinase
Probab=50.30 E-value=29 Score=40.56 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=47.5
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhHhhcCCCC----CcccccccccccCcccccchHHhhhcCchhhhhHHHHHHH
Q 014526 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (423)
Q Consensus 270 g~ISp~el~~lL~~~~~avLIDVRs~~Ef~~gHIPG----A~~a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI 345 (423)
++++|+++..+.+ ..=-.||+.|+..|- .+..+- +....-+.+.++|+..-.. +.++.+++..+.+.-
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~a------pt~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTA------PSAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCC------CCHHHHHHHHHHHHh
Confidence 5899999988774 333469999997762 222211 1111223444666522111 111222222221100
Q ss_pred hhhccCCCCceEEEEeCCCch-H-HHHHHHHH
Q 014526 346 RNLKIVQDRSKVIVMDADGTR-S-KGIARSLR 375 (423)
Q Consensus 346 ~~Lk~l~kd~~IIVyC~sG~r-S-~~AA~~L~ 375 (423)
...+||++||++|.| + ..++.+|.
T Consensus 339 ------slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 339 ------SSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred ------hcCCCEEEECCCCCchHHHHHHHHHH
Confidence 146799999999994 3 23344443
No 91
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=48.82 E-value=44 Score=31.47 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=34.0
Q ss_pred EEEEcCChhhHhhcCCCCCcc---cccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccCCCCceEEEEeCCC
Q 014526 288 VLIDVRHEDLRERDGIPDLRR---GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (423)
Q Consensus 288 vLIDVRs~~Ef~~gHIPGA~~---a~~~~~~nIPl~el~~~l~~llk~~~~Le~~laalGI~~Lk~l~kd~~IIVyC~sG 364 (423)
.||=.-+..|+..-++|+-.. ..-+.|.++|.++...... ....+++..+.. .+..+++|+++|..|
T Consensus 74 ~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~------~~~~~i~~eL~~----~L~~g~~V~vHC~GG 143 (168)
T PF05706_consen 74 DVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDF------AAAWQILEELAA----RLENGRKVLVHCRGG 143 (168)
T ss_dssp EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---H------HHHHHHHHHHHH----HHHTT--EEEE-SSS
T ss_pred EEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCH------HHHHHHHHHHHH----HHHcCCEEEEECCCC
Confidence 344466777777777775411 1123445666544321100 011111111111 134688999999998
Q ss_pred c-hHHH-HHHHHHHcc
Q 014526 365 T-RSKG-IARSLRKLG 378 (423)
Q Consensus 365 ~-rS~~-AA~~L~~~G 378 (423)
. |+.. ||..|..+|
T Consensus 144 lGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 144 LGRTGLVAACLLLELG 159 (168)
T ss_dssp SSHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7 7765 566677766
No 92
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=45.72 E-value=9.5 Score=38.91 Aligned_cols=44 Identities=18% Similarity=-0.024 Sum_probs=27.8
Q ss_pred ccCCCCCCcch----------------HHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcC
Q 014526 189 GTTKESLPPEI----------------RDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLG 236 (423)
Q Consensus 189 G~~~~~l~p~~----------------~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lg 236 (423)
+||++|+.|.. .+....|...+ +++|+.+.++ ..++.|.+ -++|
T Consensus 201 t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~gp~~giig-sl~a~Eai-~i~g 260 (318)
T TIGR03603 201 TGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAE--LIFPLLNIKK-NLVVSEIF-AIGS 260 (318)
T ss_pred CCcHHHccchhhcccccccccccccccCCCCCCCccCC--eehhHHHHHH-HHHHHHHH-HHhC
Confidence 58999997721 12234566656 7888777777 66666665 4444
No 93
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=45.65 E-value=21 Score=31.15 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=27.5
Q ss_pred EEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHHHH
Q 014526 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (423)
Q Consensus 357 IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW 392 (423)
|+|+|.... ||..|...|+++.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578897654 898888888876544677888888766
No 94
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=43.40 E-value=36 Score=33.54 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=24.5
Q ss_pred CceEEEEeCCCc---hHHHHHHHHHHccCCCeEEe
Q 014526 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (423)
Q Consensus 354 d~~IIVyC~sG~---rS~~AA~~L~~~Gf~nV~~L 385 (423)
.++|+++|..|+ ....+|+.|...|| +|.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 368999998776 67788999999999 45544
No 95
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=43.17 E-value=40 Score=28.68 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=20.6
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccCC
Q 014526 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (423)
Q Consensus 352 ~kd~~IIVyC~sG~-rS~~--AA~~L~~~Gf~ 380 (423)
.++.+|+|+|..|. ||.. ++..+...|++
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 36789999999998 7754 34445666663
No 96
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=41.37 E-value=40 Score=28.28 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=21.8
Q ss_pred CCceEEEEeCCCchH-HHHHHHHHHccCC
Q 014526 353 DRSKVIVMDADGTRS-KGIARSLRKLGVM 380 (423)
Q Consensus 353 kd~~IIVyC~sG~rS-~~AA~~L~~~Gf~ 380 (423)
.+.+++++-++..++ ...++.|+.+|+.
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 567899999988876 6678889999995
No 97
>PRK08328 hypothetical protein; Provisional
Probab=37.81 E-value=16 Score=35.40 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=32.4
Q ss_pred ccCCCCCCcchHHHhhhhhhhhhhhcccccchHHHHHHHHHHHHHhcCCC
Q 014526 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFD 238 (423)
Q Consensus 189 G~~~~~l~p~~~~~~~~~e~~~~~v~~p~g~~~~q~~~~ie~l~~~lgf~ 238 (423)
++|++|++|+... .+++.+ +++|..+..+ ..++.|.++-++|+.
T Consensus 166 ~~c~~~~~~~~~~---~~~~~~--~~~~~~~ii~-~~~a~e~~k~l~g~~ 209 (231)
T PRK08328 166 TKRLREIFPKVKK---KKGKFP--ILGATAGVIG-SIQAMEVIKLITGYG 209 (231)
T ss_pred CCCHHHhCCCCCC---ccccCC--cCchHHHHHH-HHHHHHHHHHHhCCC
Confidence 4799999997642 234445 7888888888 788888888777754
No 98
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=36.77 E-value=60 Score=31.36 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=25.6
Q ss_pred CceEEEEeCCCc---hHHHHHHHHHHccCCCeE-Eecc
Q 014526 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAF-LVQG 387 (423)
Q Consensus 354 d~~IIVyC~sG~---rS~~AA~~L~~~Gf~nV~-~L~G 387 (423)
.++|+++|..|+ ....+|+.|+..|++ |. ++.|
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~~~ 85 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLLLG 85 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEEeC
Confidence 568999998877 567889999999985 44 3334
No 99
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=36.39 E-value=56 Score=31.06 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=25.3
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCeEEe
Q 014526 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (423)
Q Consensus 352 ~kd~~IIVyC~sG~---rS~~AA~~L~~~Gf~nV~~L 385 (423)
++.++|+++|..|+ ....+|+.|...|+ +|+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 45678999998776 67788999988777 46665
No 100
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.30 E-value=85 Score=27.07 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCceEEEEeCCCch----HHHHHHHHHHccCCCeEEeccc------HHHHHHcCCc
Q 014526 353 DRSKVIVMDADGTR----SKGIARSLRKLGVMRAFLVQGG------FQSWVKEGLR 398 (423)
Q Consensus 353 kd~~IIVyC~sG~r----S~~AA~~L~~~Gf~nV~~L~GG------~~aW~aaGLP 398 (423)
.+-.+|++|..-.. .......|++.|+.++.++-|| ++.|.+.|+.
T Consensus 49 ~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 49 EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCC
Confidence 34568888865442 3445677889999888888887 3567888853
No 101
>PRK10565 putative carbohydrate kinase; Provisional
Probab=36.12 E-value=51 Score=35.82 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCeEEe
Q 014526 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (423)
Q Consensus 352 ~kd~~IIVyC~sG~---rS~~AA~~L~~~Gf~nV~~L 385 (423)
++..+|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 44567999998876 567789999999995 5433
No 102
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=35.43 E-value=90 Score=25.80 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=5.1
Q ss_pred HHHHHHhhhhcc
Q 014526 167 RNTIVALEESMT 178 (423)
Q Consensus 167 ~~~~~~~~~~~~ 178 (423)
+++...+++-+-
T Consensus 59 ~~~~~~~~~~V~ 70 (94)
T PF05957_consen 59 REAAEQTEDYVR 70 (94)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 103
>PRK10126 tyrosine phosphatase; Provisional
Probab=34.55 E-value=45 Score=29.82 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.6
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHHHH
Q 014526 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (423)
Q Consensus 355 ~~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW 392 (423)
.+|+|+|.... ||..|-..|+.++- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998655 99988888888763 466666777555
No 104
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=34.40 E-value=1.8e+02 Score=30.35 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=42.7
Q ss_pred hhhhhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhh
Q 014526 75 KSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS 132 (423)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (423)
.+-+.++...++..-.+-.++..++|++.++..+..+.+-.++-.+|++.|+.++...
T Consensus 123 ~a~~~qt~~dl~~~~~t~~~~~~~~y~~~i~~a~~~v~tG~~t~~~Ai~~av~~~~~~ 180 (361)
T PF06152_consen 123 EALVRQTKGDLNNVNQTLLRTAQDVYRRIIDEAVAQVVTGAFTYQQAIRDAVKKLADS 180 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc
Confidence 3334556666644334455678999999999999988888888888999988876553
No 105
>PRK12361 hypothetical protein; Provisional
Probab=32.48 E-value=1.4e+02 Score=32.50 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=14.4
Q ss_pred CCCceEEEEeCCCc-hHHH
Q 014526 352 QDRSKVIVMDADGT-RSKG 369 (423)
Q Consensus 352 ~kd~~IIVyC~sG~-rS~~ 369 (423)
..+.+|+|+|..|. ||..
T Consensus 173 ~~~~~VlVHC~~G~sRSa~ 191 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVL 191 (547)
T ss_pred HCCCeEEEECCCCCCcHHH
Confidence 35678999999998 7754
No 106
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=31.89 E-value=68 Score=34.59 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=31.0
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCCeEEe-ccc---------HHHHHHcCCce
Q 014526 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLV-QGG---------FQSWVKEGLRI 399 (423)
Q Consensus 355 ~~IIVyC~sG~---rS~~AA~~L~~~Gf~nV~~L-~GG---------~~aW~aaGLPv 399 (423)
++|+|+|..|+ ....+|+.|...||+ |.++ .+. +..|...|.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 68999998887 456789999999995 5543 221 34566666555
No 107
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=31.60 E-value=68 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.3
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCCCeEEe
Q 014526 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLV 385 (423)
Q Consensus 356 ~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L 385 (423)
++.++|.+.. ||..|-..|++.|| +|..+
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 5789998765 99999999999999 67766
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=31.31 E-value=1.1e+02 Score=30.82 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCeE
Q 014526 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (423)
Q Consensus 352 ~kd~~IIVyC~sG~rS~~AA~~L~~~Gf~nV~ 383 (423)
.++..+++||+.-.........|++.||.++.
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 57889999999988999999999999997654
No 109
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=31.21 E-value=82 Score=27.33 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHH----------HHHHcCCcee
Q 014526 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ----------SWVKEGLRIK 400 (423)
Q Consensus 356 ~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~----------aW~aaGLPv~ 400 (423)
+|+|+|.... ||..|-..|+.++-.++.+...|.. ...+.|+++.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~ 57 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDIS 57 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCcc
Confidence 6899997654 8888888888876556666666652 4455666654
No 110
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=31.02 E-value=91 Score=28.76 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=34.1
Q ss_pred hccCCCCceEEEEeCCCc--hHHHHHHHHHHc---cCCCeEEecccHHHH
Q 014526 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSW 392 (423)
Q Consensus 348 Lk~l~kd~~IIVyC~sG~--rS~~AA~~L~~~---Gf~nV~~L~GG~~aW 392 (423)
++.++++..+|+.|..|. .|...|..|... |..++..+.||-.++
T Consensus 61 l~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 61 LAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 344567778999999987 688888887553 556899999987665
No 111
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=30.08 E-value=59 Score=29.14 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.0
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccHHHH
Q 014526 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (423)
Q Consensus 355 ~~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~~aW 392 (423)
++|+|+|.+.. ||..|...|+.++- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999997554 89888888887653 466677777655
No 112
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.33 E-value=65 Score=25.67 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEeCCCchHHHHH-HH----HHHccCCCeEEeccc
Q 014526 356 KVIVMDADGTRSKGIA-RS----LRKLGVMRAFLVQGG 388 (423)
Q Consensus 356 ~IIVyC~sG~rS~~AA-~~----L~~~Gf~nV~~L~GG 388 (423)
+|++.|.+|..+...+ .. +++.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 5899999998554433 44 5677874 4444443
No 113
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.11 E-value=2.7e+02 Score=27.14 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=21.5
Q ss_pred CceEEEEeCCCchHHHH-HHHHHHccCCC
Q 014526 354 RSKVIVMDADGTRSKGI-ARSLRKLGVMR 381 (423)
Q Consensus 354 d~~IIVyC~sG~rS~~A-A~~L~~~Gf~n 381 (423)
.+..++||.....+... +...++.||.-
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRP 175 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcce
Confidence 57899999998888765 45557789953
No 114
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=28.56 E-value=1.5e+02 Score=27.50 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=23.9
Q ss_pred hhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhhcccc
Q 014526 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT 136 (423)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (423)
+|..+-+-|-+.+..+.+++++.++.+++-++.++..+-.-++.|
T Consensus 31 aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et 75 (155)
T PF07464_consen 31 AIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEET 75 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 333333444444556666666666666666666665555444433
No 115
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=28.37 E-value=50 Score=28.95 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.7
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCC-CeEEecccHHHH
Q 014526 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (423)
Q Consensus 356 ~IIVyC~sG~-rS~~AA~~L~~~Gf~-nV~~L~GG~~aW 392 (423)
+|+|+|.+.. ||..|...|+.+.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6899998655 888888888876543 677788887654
No 116
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=28.04 E-value=84 Score=34.76 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=30.8
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCCeEEe-cc----c-----HHHHHHcCCce
Q 014526 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLV-QG----G-----FQSWVKEGLRI 399 (423)
Q Consensus 355 ~~IIVyC~sG~---rS~~AA~~L~~~Gf~nV~~L-~G----G-----~~aW~aaGLPv 399 (423)
++|+|+|..|+ ....+|+.|...||+ |.++ .+ . +..|...|.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 68999998887 456789999999995 5544 22 2 23466667654
No 117
>PF09718 Tape_meas_lam_C: Lambda phage tail tape-measure protein (Tape_meas_lam_C); InterPro: IPR006431 This entry is represented by the C-terminal region of Bacteriophage lambda, GpH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group are characterised by a relatively well-conserved region near the C terminus of GpH - the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=27.88 E-value=1.8e+02 Score=23.35 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=22.4
Q ss_pred hhHHhhhhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhh
Q 014526 78 FDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKS 117 (423)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (423)
+...+..+.|+-.+.-.+.+++.+++++.++..+.+-+.+
T Consensus 8 ~~~a~~~~~~~a~n~a~~~~~~~~~a~~~~~dal~~f~~t 47 (78)
T PF09718_consen 8 AKSALADYADSAQNVASQAEDAFSSAFDGMTDALVDFVTT 47 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666554444433
No 118
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.76 E-value=70 Score=26.81 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=26.1
Q ss_pred CceEEEEeCCCchHHHHHHH----HHHccCCCeEEecccHHHH
Q 014526 354 RSKVIVMDADGTRSKGIARS----LRKLGVMRAFLVQGGFQSW 392 (423)
Q Consensus 354 d~~IIVyC~sG~rS~~AA~~----L~~~Gf~nV~~L~GG~~aW 392 (423)
.++|++.|.+|..|..++.. +++.|++ +.+-..++..-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 46899999999976666654 4667874 55555565543
No 119
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=27.59 E-value=49 Score=28.56 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCCcEEEEcCC
Q 014526 274 PKSTLELLRGKENAVLIDVRH 294 (423)
Q Consensus 274 p~el~~lL~~~~~avLIDVRs 294 (423)
.+++.+++...+--+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 456667775555568999996
No 120
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=27.24 E-value=1.1e+02 Score=28.32 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=19.6
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccC
Q 014526 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (423)
Q Consensus 352 ~kd~~IIVyC~sG~-rS~~--AA~~L~~~Gf 379 (423)
.++.+|+|.|..|. ||.. +|+.|...|.
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 35669999999997 7654 3456666454
No 121
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=26.52 E-value=1e+02 Score=32.89 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=33.3
Q ss_pred HHHhhhccCCCCceEEEEeCC---CchHHHHHHHHHHccCCCeEEe
Q 014526 343 AVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLV 385 (423)
Q Consensus 343 lGI~~Lk~l~kd~~IIVyC~s---G~rS~~AA~~L~~~Gf~nV~~L 385 (423)
.++..++..-.+++|++++++ |+.+....++|++.|-++|+.-
T Consensus 345 ~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~r 390 (474)
T KOG0572|consen 345 KKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIR 390 (474)
T ss_pred hhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEE
Confidence 333334444478999999986 7789999999999999988854
No 122
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=25.34 E-value=48 Score=36.09 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=31.7
Q ss_pred CCCceEEEEeCCCchH-----H-----HHHHHHH-HccC----CCeEEecc---cHHHHHHcCCcee
Q 014526 352 QDRSKVIVMDADGTRS-----K-----GIARSLR-KLGV----MRAFLVQG---GFQSWVKEGLRIK 400 (423)
Q Consensus 352 ~kd~~IIVyC~sG~rS-----~-----~AA~~L~-~~Gf----~nV~~L~G---G~~aW~aaGLPv~ 400 (423)
.+.++|.++|..|+|= . .+.+.|+ ..+| ..++++.| |+-+|...++-+.
T Consensus 83 h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG 149 (501)
T KOG1386|consen 83 HKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLG 149 (501)
T ss_pred cCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHH
Confidence 3678899999999862 1 1223344 3344 35778877 7789988776553
No 123
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=24.42 E-value=1.1e+02 Score=33.25 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=32.7
Q ss_pred CCCCceEEEEeCC---CchHHHHHHHHHHccCCCeEEeccc
Q 014526 351 VQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGG 388 (423)
Q Consensus 351 l~kd~~IIVyC~s---G~rS~~AA~~L~~~Gf~nV~~L~GG 388 (423)
.=++++|++++++ |..|.+..+.|+++|-++|++-.+.
T Consensus 345 ~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 345 VVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred HhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 3478999999986 7789999999999999999877653
No 124
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=24.23 E-value=1.1e+02 Score=30.64 Aligned_cols=25 Identities=8% Similarity=0.298 Sum_probs=16.9
Q ss_pred ccCCCeEEec-ccH-HHHHHcCCceec
Q 014526 377 LGVMRAFLVQ-GGF-QSWVKEGLRIKE 401 (423)
Q Consensus 377 ~Gf~nV~~L~-GG~-~aW~aaGLPv~~ 401 (423)
.+..+||++- +|+ +.|...|+.+..
T Consensus 89 ~~~~kv~viG~~~l~~~l~~~G~~~~~ 115 (269)
T COG0647 89 KPGKKVYVIGEEGLKEELEGAGFELVD 115 (269)
T ss_pred CCCCEEEEECCcchHHHHHhCCcEEec
Confidence 3445677663 355 688888888776
No 125
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=24.21 E-value=3.3e+02 Score=25.22 Aligned_cols=51 Identities=6% Similarity=0.141 Sum_probs=21.0
Q ss_pred hhhhhhhhhhhhhhHHHHHhHHhhhhhHhhhhhhhhHhHHHHHhhhhhhcc
Q 014526 84 GVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID 134 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (423)
.|++.|.+..++..+-+++-..++..-|...-..+.++++++-.+|-.+++
T Consensus 27 Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~ 77 (155)
T PF07464_consen 27 EVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAE 77 (155)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333344444444444433333
No 126
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=23.48 E-value=1.1e+02 Score=32.05 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=23.1
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCC
Q 014526 353 DRSKVIVMDADGTRSKGIARSLRKLGVM 380 (423)
Q Consensus 353 kd~~IIVyC~sG~rS~~AA~~L~~~Gf~ 380 (423)
.+.++++.+.+|..|..+++.+.+.|++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~ 202 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE
Confidence 4567888888899999999888888984
No 127
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.47 E-value=1.7e+02 Score=25.97 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=34.6
Q ss_pred CCceEEEEeCCCc----hHHHHHHHHHHccCCCeEEeccc------HHHHHHcCCc
Q 014526 353 DRSKVIVMDADGT----RSKGIARSLRKLGVMRAFLVQGG------FQSWVKEGLR 398 (423)
Q Consensus 353 kd~~IIVyC~sG~----rS~~AA~~L~~~Gf~nV~~L~GG------~~aW~aaGLP 398 (423)
.+-.+|++|..-. ........|++.|..++.++.|| +..|.+.|..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 4667999998543 23556777899998788888898 4678888864
No 128
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=23.11 E-value=2.1e+02 Score=30.12 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=7.4
Q ss_pred cceeccCCCC
Q 014526 48 LAIELTPENP 57 (423)
Q Consensus 48 ~~~~~~~~~~ 57 (423)
..++|+|..+
T Consensus 186 ~~I~I~P~~~ 195 (370)
T PLN03094 186 TLIDITPRDP 195 (370)
T ss_pred eeEEEecCCC
Confidence 4588998864
No 129
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.97 E-value=88 Score=26.70 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=25.6
Q ss_pred eEEEEeCCCchHHHHHHH----HHHccCCCeEEecccHHHH
Q 014526 356 KVIVMDADGTRSKGIARS----LRKLGVMRAFLVQGGFQSW 392 (423)
Q Consensus 356 ~IIVyC~sG~rS~~AA~~----L~~~Gf~nV~~L~GG~~aW 392 (423)
+|++.|.+|..|..++.. +++.|+ ++.+...+...-
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHH
Confidence 489999999888777765 466788 466666666543
No 130
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=22.35 E-value=1e+02 Score=24.98 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=21.3
Q ss_pred eEEEEeCCCchHH-HHHH----HHHHccCCCeEEecccHHHH
Q 014526 356 KVIVMDADGTRSK-GIAR----SLRKLGVMRAFLVQGGFQSW 392 (423)
Q Consensus 356 ~IIVyC~sG~rS~-~AA~----~L~~~Gf~nV~~L~GG~~aW 392 (423)
+|+++|++|..+. .++. .+.+.|.. ..+-..++..+
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 6899999998543 3343 34556663 33444555544
No 131
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.30 E-value=1.6e+02 Score=30.15 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=23.5
Q ss_pred eCCCch--HHHHHHHHHHccCCCeEEecccHHHHHHc--CCceec
Q 014526 361 DADGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVKE--GLRIKE 401 (423)
Q Consensus 361 C~sG~r--S~~AA~~L~~~Gf~nV~~L~GG~~aW~aa--GLPv~~ 401 (423)
|.-|.+ +....+.|++.|+ ++..+.=|=.+|..+ |.|+-.
T Consensus 122 cavGK~tTal~L~~~l~~~G~-~a~fvaTGQTGimia~~Gv~iDa 165 (301)
T PF07755_consen 122 CAVGKMTTALELRRALRERGI-NAGFVATGQTGIMIAGYGVPIDA 165 (301)
T ss_dssp SSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCHSEC--GGG
T ss_pred ccccHHHHHHHHHHHHHHcCC-CceEEecCCceEEEecCCeeccc
Confidence 555654 4566788999999 566666677788764 455543
No 132
>PRK13530 arsenate reductase; Provisional
Probab=22.12 E-value=1.5e+02 Score=26.10 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=25.5
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCeEEecccH
Q 014526 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (423)
Q Consensus 355 ~~IIVyC~sG~-rS~~AA~~L~~~Gf~nV~~L~GG~ 389 (423)
++|+|+|.+.. ||..|-..++.++-.++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 47999998655 888887777765434676777775
No 133
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=22.10 E-value=94 Score=26.71 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=23.7
Q ss_pred eEEEEeCCCchHHHHHHHH----HHccCCCeEEecccHHH
Q 014526 356 KVIVMDADGTRSKGIARSL----RKLGVMRAFLVQGGFQS 391 (423)
Q Consensus 356 ~IIVyC~sG~rS~~AA~~L----~~~Gf~nV~~L~GG~~a 391 (423)
+|+++|.+|..+..++..+ ++.|++ +.+-..+...
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 6999999999776766654 566774 5544444443
No 134
>PF05802 EspB: Enterobacterial EspB protein
Probab=21.67 E-value=5.2e+02 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=18.0
Q ss_pred cccCcceEEE-eeccCCCCCCcchHHHhhh
Q 014526 177 MTNGASFVVY-YYGTTKESLPPEIRDALNL 205 (423)
Q Consensus 177 ~~~~~~~~~~-~~G~~~~~l~p~~~~~~~~ 205 (423)
|.+..+|++. +..--..-||.+|...|.+
T Consensus 225 ~~~~t~f~~vtslaeg~ktlptt~sesvks 254 (317)
T PF05802_consen 225 ITGSTAFIAVTSLAEGTKTLPTTISESVKS 254 (317)
T ss_pred hcCCCceEeeehhhcccccCCchHHHhhcc
Confidence 5666667654 4444456788888776544
No 135
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.03 E-value=92 Score=23.59 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=15.8
Q ss_pred eEEEEeCCCc-hHHHHHHHH----HHccC
Q 014526 356 KVIVMDADGT-RSKGIARSL----RKLGV 379 (423)
Q Consensus 356 ~IIVyC~sG~-rS~~AA~~L----~~~Gf 379 (423)
+|+++|++|. .|..+...| .+.++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~ 29 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGI 29 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCC
Confidence 3789999995 555555554 44465
No 136
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=20.77 E-value=2.8e+02 Score=25.86 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHhhhccCCCCceEEEEeCCCc--hHHHHHHHH---HHccCCCeEEecccHHH
Q 014526 343 AVIRNLKIVQDRSKVIVMDADGT--RSKGIARSL---RKLGVMRAFLVQGGFQS 391 (423)
Q Consensus 343 lGI~~Lk~l~kd~~IIVyC~sG~--rS~~AA~~L---~~~Gf~nV~~L~GG~~a 391 (423)
-|...++.++++..+|+.+-.|. .|...|..| +..| .++..+.||-.+
T Consensus 56 E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~G 108 (155)
T COG1576 56 EGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADG 108 (155)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCccc
Confidence 34444566788889999988886 677777776 4557 789999998653
No 137
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.17 E-value=99 Score=25.79 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=24.5
Q ss_pred eEEEEeCCCchHHHHHHH----HHHccCCCeEEecccHHHH
Q 014526 356 KVIVMDADGTRSKGIARS----LRKLGVMRAFLVQGGFQSW 392 (423)
Q Consensus 356 ~IIVyC~sG~rS~~AA~~----L~~~Gf~nV~~L~GG~~aW 392 (423)
+|++.|.+|..+...+.. +++.|++ +.+-..++..-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 388999999977666655 4666874 55555565544
Done!