Your job contains 1 sequence.
>014528
MGILLLLFYQTTWWTLIGCCQRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVH
TANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGN
FKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLV
YQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI
PSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWG
ALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTL
TWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTKKDVYGQVWPRHFQLYAF
QDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014528
(423 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150931 - symbol:TDP1 "tyrosyl-DNA phosphodies... 1429 2.8e-146 1
UNIPROTKB|Q9NUW8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 601 1.3e-63 2
UNIPROTKB|E2REL5 - symbol:TDP1 "Uncharacterized protein" ... 598 1.6e-63 2
ZFIN|ZDB-GENE-090909-1 - symbol:tdp1 "tyrosyl-DNA phospho... 571 2.3e-62 2
MGI|MGI:1920036 - symbol:Tdp1 "tyrosyl-DNA phosphodiester... 586 6.1e-62 2
UNIPROTKB|F1NSQ5 - symbol:TDP1 "Uncharacterized protein" ... 577 6.1e-62 2
RGD|1309618 - symbol:Tdp1 "tyrosyl-DNA phosphodiesterase ... 584 7.8e-62 2
UNIPROTKB|F1MST1 - symbol:TDP1 "Uncharacterized protein" ... 577 1.4e-60 2
UNIPROTKB|F1SDA7 - symbol:LOC100625067 "Uncharacterized p... 572 1.8e-60 2
UNIPROTKB|G3V2F4 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 605 5.7e-59 1
UNIPROTKB|Q86TV8 - symbol:TDP1 "Full-length cDNA clone CS... 556 6.9e-59 2
UNIPROTKB|E7EPD8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 602 1.2e-58 1
UNIPROTKB|H0YJ44 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 421 1.8e-39 1
WB|WBGene00018678 - symbol:F52C12.1 species:6239 "Caenorh... 375 1.9e-39 2
FB|FBgn0260817 - symbol:gkt "glaikit" species:7227 "Droso... 403 1.5e-37 1
UNIPROTKB|G4N013 - symbol:MGG_06176 "Uncharacterized prot... 220 2.9e-30 3
ASPGD|ASPL0000004965 - symbol:AN5903 species:162425 "Emer... 204 1.3e-25 3
POMBASE|SPCP31B10.05 - symbol:tdp1 "tyrosyl-DNA phosphodi... 232 6.3e-25 3
UNIPROTKB|G3V2J6 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 179 3.4e-13 1
UNIPROTKB|H0YJL7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 159 5.3e-11 1
UNIPROTKB|Q9BRS7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 162 1.9e-09 1
DICTYBASE|DDB_G0273869 - symbol:DDB_G0273869 "Tyrosyl-DNA... 103 2.0e-07 3
DICTYBASE|DDB_G0273125 - symbol:DDB_G0273125 "Tyrosyl-DNA... 103 2.0e-07 3
>TAIR|locus:2150931 [details] [associations]
symbol:TDP1 "tyrosyl-DNA phosphodiesterase 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA]
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CP002688 GO:GO:0006281
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 HSSP:Q9NUW8 EMBL:AY150498 EMBL:FJ858738
IPI:IPI00525009 RefSeq:NP_197021.2 UniGene:At.27105
ProteinModelPortal:Q8H1D9 IntAct:Q8H1D9 PaxDb:Q8H1D9 PRIDE:Q8H1D9
EnsemblPlants:AT5G15170.1 GeneID:831369 KEGG:ath:AT5G15170
TAIR:At5g15170 InParanoid:Q8H1D9 OMA:CRAMPHI PhylomeDB:Q8H1D9
ProtClustDB:CLSN2690163 Genevestigator:Q8H1D9 Uniprot:Q8H1D9
Length = 605
Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
Identities = 269/397 (67%), Positives = 303/397 (76%)
Query: 21 QRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 80
QR KPANWILHKP LPISFGTHHSKA+ L+YPRGVR++VHTANLIHVDWNNKSQGLWMQD
Sbjct: 214 QRKKPANWILHKPRLPISFGTHHSKAIFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQD 273
Query: 81 FPLKDQN-NLSEECGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVR 139
FP KD + + + CGFE DLIDYL+ LKWPEF+ANLP G A VR
Sbjct: 274 FPWKDDDKDPPKGCGFEGDLIDYLNVLKWPEFTANLPGRGNVKINAAFFKKFDYSDATVR 333
Query: 140 LIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELXX 199
LIASVPGYHTG +L KWGHMKLRT+LQEC F++ F++SPL+YQFSSLGSLDEKW+AE
Sbjct: 334 LIASVPGYHTGFNLNKWGHMKLRTILQECIFDREFRRSPLIYQFSSLGSLDEKWLAEFGN 393
Query: 200 XXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKW 259
EDKTPLG G+ LI+WPTVEDVRCSLEGYAAGNAIPSP KNV+K FLKKYWA+W
Sbjct: 394 SLSSGITEDKTPLGPGDSLIIWPTVEDVRCSLEGYAAGNAIPSPLKNVEKPFLKKYWARW 453
Query: 260 KASHTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVL 319
KA H+ R RAMPHIKTF RYN QK+AWFLLTS+NLSKAAWGALQKNNSQLMIRSYELGVL
Sbjct: 454 KADHSARGRAMPHIKTFTRYNDQKIAWFLLTSSNLSKAAWGALQKNNSQLMIRSYELGVL 513
Query: 320 ILPSA-KRHGCGFSCT-SNIVPSEIKSGSTETSQIQK-TKLVTLTWHGSSDAGASSXXXX 376
LPS K GC FSCT SN PS +K+ +++K +KLVT+TW G D
Sbjct: 514 FLPSPIKTQGCVFSCTESN--PSVMKAKQETKDEVEKRSKLVTMTWQGDRDL---PEIIS 568
Query: 377 XXXXXXXXXQRYSSEDVPWSWDKRYTKKDVYGQVWPR 413
+ YS EDVPWSWD+ Y+KKDVYGQVWPR
Sbjct: 569 LPVPYQLPPKPYSPEDVPWSWDRGYSKKDVYGQVWPR 605
>UNIPROTKB|Q9NUW8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000012 "single strand break repair"
evidence=IDA;IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] Reactome:REACT_216 InterPro:IPR010347 Pfam:PF06087
UniProt:Q9NUW8 GO:GO:0005634 GO:GO:0005737 GO:GO:0008219
GO:GO:0003690 GO:GO:0003697 GO:GO:0004527 GO:GO:0006302
GO:GO:0090305 GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR EMBL:AK001952 EMBL:DQ367843
EMBL:AL137128 EMBL:BC015474 EMBL:AF182002 EMBL:AF182003
IPI:IPI00655885 RefSeq:NP_001008744.1 RefSeq:NP_060789.2
UniGene:Hs.209945 PDB:1JY1 PDB:1MU7 PDB:1MU9 PDB:1NOP PDB:1QZQ
PDB:1RFF PDB:1RFI PDB:1RG1 PDB:1RG2 PDB:1RGT PDB:1RGU PDB:1RH0
PDBsum:1JY1 PDBsum:1MU7 PDBsum:1MU9 PDBsum:1NOP PDBsum:1QZQ
PDBsum:1RFF PDBsum:1RFI PDBsum:1RG1 PDBsum:1RG2 PDBsum:1RGT
PDBsum:1RGU PDBsum:1RH0 ProteinModelPortal:Q9NUW8 SMR:Q9NUW8
IntAct:Q9NUW8 MINT:MINT-3074488 STRING:Q9NUW8 PhosphoSite:Q9NUW8
DMDM:37999797 PaxDb:Q9NUW8 PRIDE:Q9NUW8 Ensembl:ENST00000335725
Ensembl:ENST00000393454 GeneID:55775 KEGG:hsa:55775 UCSC:uc001xxy.3
CTD:55775 GeneCards:GC14P090422 HGNC:HGNC:18884 MIM:607198
MIM:607250 neXtProt:NX_Q9NUW8 Orphanet:94124 PharmGKB:PA421
HOGENOM:HOG000067775 HOVERGEN:HBG061242 InParanoid:Q9NUW8
OrthoDB:EOG4NP736 PhylomeDB:Q9NUW8 SABIO-RK:Q9NUW8 BindingDB:Q9NUW8
ChEMBL:CHEMBL1075138 EvolutionaryTrace:Q9NUW8 GenomeRNAi:55775
NextBio:60841 ArrayExpress:Q9NUW8 Bgee:Q9NUW8 CleanEx:HS_TDP1
Genevestigator:Q9NUW8 GermOnline:ENSG00000042088
Length = 608
Score = 601 (216.6 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 141/315 (44%), Positives = 188/315 (59%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +
Sbjct: 243 KPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLY 302
Query: 82 P-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
P + D + S E F+ DLI YL P + V
Sbjct: 303 PRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDV----------IHKHDLSETNV 352
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM 194
LI S PG GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+
Sbjct: 353 YLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWL 412
Query: 195 -AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DF 251
+E E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++
Sbjct: 413 CSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNW 472
Query: 252 LKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQL 309
L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QL
Sbjct: 473 LHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQL 532
Query: 310 MIRSYELGVLILPSA 324
MIRSYELGVL LPSA
Sbjct: 533 MIRSYELGVLFLPSA 547
Score = 66 (28.3 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 388 YSSEDVPWSWDKRYTKK-DVYGQVW 411
Y S+D PW W+ Y K D +G +W
Sbjct: 581 YGSKDRPWIWNIPYVKAPDTHGNMW 605
>UNIPROTKB|E2REL5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:AAEX03005923
RefSeq:XP_547950.2 Ensembl:ENSCAFT00000027726 GeneID:490828
KEGG:cfa:490828 Uniprot:E2REL5
Length = 609
Score = 598 (215.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 148/340 (43%), Positives = 197/340 (57%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +
Sbjct: 244 KPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLY 303
Query: 82 PLKDQ-NNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
P Q + S E F+ DLI YL +A L V
Sbjct: 304 PRMAQATHRSGESATHFKADLISYLMAYN----AAPLKEW------IDTIHEHDLSETNV 353
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQE--CTFEKGFKKSPLVYQFSSLGSL---DEKW 193
LI S PG GS WGH +LR +L+E + KG + P+V QFSS+GS+ D KW
Sbjct: 354 YLIGSTPGRFQGSHKDNWGHFRLRKLLREHASSITKG-ESWPIVGQFSSIGSMGADDSKW 412
Query: 194 M-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-D 250
+ +E E +TP PL +++P+VE+VR SLEGY AG ++P + +K +
Sbjct: 413 LCSEFKESLVTLGKESRTPGKSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQN 472
Query: 251 FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQ 308
+L Y+ KW A +GRS AMPHIKT+ R + ++AWFL+TSANLSKAAWGAL+KN +Q
Sbjct: 473 WLHSYFHKWMADTSGRSNAMPHIKTYMRSSPDFSQIAWFLVTSANLSKAAWGALEKNGAQ 532
Query: 309 LMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTE 348
LMIRSYELGVL LPSA F S V + SGS E
Sbjct: 533 LMIRSYELGVLFLPSA------FGLDSFKVKQKFFSGSKE 566
Score = 68 (29.0 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 388 YSSEDVPWSWDKRYTKK-DVYGQVW 411
Y ++D PW W+ YTK D +G +W
Sbjct: 582 YGNKDRPWIWNIPYTKAPDTHGNMW 606
>ZFIN|ZDB-GENE-090909-1 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase 1"
species:7955 "Danio rerio" [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 ZFIN:ZDB-GENE-090909-1
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 KO:K10862 PANTHER:PTHR12415 CTD:55775
EMBL:BX005004 EMBL:BX927236 IPI:IPI00900849 RefSeq:XP_700174.2
UniGene:Dr.76799 Ensembl:ENSDART00000108712
Ensembl:ENSDART00000150149 GeneID:571485 KEGG:dre:571485
NextBio:20890577 Uniprot:E7FEK0
Length = 615
Score = 571 (206.1 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 137/320 (42%), Positives = 186/320 (58%)
Query: 35 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLKDQNN---LS 90
L I+FGTHH+K MLL Y G R+I+ T+NLI DW K+QG+WM +P Q +
Sbjct: 262 LDIAFGTHHTKMMLLWYEEGFRVIILTSNLIRADWYQKTQGMWMSPLYPRLPQGSPGTAG 321
Query: 91 EEC-GFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHT 149
E GF+ DL++YL + PE AN V LI S PG +
Sbjct: 322 ESLTGFKRDLLEYLEAYRAPEL-ANW---------IERIKQHDLSETRVYLIGSTPGRYQ 371
Query: 150 GSSLKKWGHMKLRTVLQECTFE-KGFKKSPLVYQFSSLGS--LDE-KWMAELXXXXXXXX 205
G +++KWGH++LR +L E T + ++ ++ QFSS+GS LD+ KW+A
Sbjct: 372 GPAMEKWGHLRLRKLLSEHTQPMQNEERWHVLGQFSSIGSMGLDKTKWLAAEFQRTLTTL 431
Query: 206 XEDKTPLGIGEP--LIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKAS 262
+ L E L+++P+VE+VR SLEGY AG ++P + K +L Y+ W A
Sbjct: 432 GKAGKSLASPETQMLLIYPSVENVRTSLEGYPAGGSLPYSIQTAQKQLWLHSYFHGWHAD 491
Query: 263 HTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 320
TGRS AMPHIKT+ R + +LAWFL+TSANLSKAAWGAL+KNN+Q+M+RSYELGVL
Sbjct: 492 VTGRSNAMPHIKTYMRISPDFTQLAWFLVTSANLSKAAWGALEKNNTQIMVRSYELGVLY 551
Query: 321 LPSAKRHGCGFSCTSNIVPS 340
LPSA F N+ P+
Sbjct: 552 LPSAFNMST-FPVEKNVFPA 570
Score = 84 (34.6 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 386 QRYSSEDVPWSWDKRYTKK-DVYGQVW 411
QRYSS+D PW W+ YT+ D +G VW
Sbjct: 586 QRYSSKDRPWIWNIPYTQAPDTHGNVW 612
>MGI|MGI:1920036 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO] InterPro:IPR010347 Pfam:PF06087
MGI:MGI:1920036 GO:GO:0005634 GO:GO:0004527 GO:GO:0090305
GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417 PANTHER:PTHR12415
HOGENOM:HOG000067775 HOVERGEN:HBG061242 EMBL:AK033868 EMBL:BC019804
IPI:IPI00222253 UniGene:Mm.312323 UniGene:Mm.487464
UniGene:Mm.488658 ProteinModelPortal:Q8BJ37 SMR:Q8BJ37
IntAct:Q8BJ37 STRING:Q8BJ37 PhosphoSite:Q8BJ37 PaxDb:Q8BJ37
PRIDE:Q8BJ37 InParanoid:Q8BJ37 CleanEx:MM_TDP1
Genevestigator:Q8BJ37 GermOnline:ENSMUSG00000021177 Uniprot:Q8BJ37
Length = 609
Score = 586 (211.3 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 142/316 (44%), Positives = 188/316 (59%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP AN L + L I+FGTHH+K MLL+Y G+R+++HT+NLI DW+ K+QG+W+ +
Sbjct: 244 KPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLY 303
Query: 82 PLKDQ-NNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
P DQ ++ + E F+ DL YL+ P + V
Sbjct: 304 PRIDQGSHTAGESSTRFKADLTSYLTAYNAPPLQEWIDI----------IQEHDLSETNV 353
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQEC--TFEKGFKKSPLVYQFSSLGSL--DE-KW 193
LI S PG GS WGH +LR +LQ + KG + P+V QFSS+GSL DE KW
Sbjct: 354 YLIGSTPGRFQGSHRDNWGHFRLRKLLQAHAPSTPKG-ECWPIVGQFSSIGSLGPDESKW 412
Query: 194 M-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD- 250
+ +E E + P PL +++P+VE+VR SLEGY AG ++P + +K
Sbjct: 413 LCSEFKDSLLALREEGRPPGKSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQR 472
Query: 251 FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQ 308
+L Y+ KW A +GRS AMPHIKT+ R + KLAWFL+TSANLSKAAWGAL+KN +Q
Sbjct: 473 WLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVTSANLSKAAWGALEKNGTQ 532
Query: 309 LMIRSYELGVLILPSA 324
LMIRSYELGVL LPSA
Sbjct: 533 LMIRSYELGVLFLPSA 548
Score = 65 (27.9 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 388 YSSEDVPWSWDKRYTKK-DVYGQVW 411
Y S+D PW W+ Y K D +G +W
Sbjct: 582 YRSKDRPWIWNIPYVKAPDTHGNMW 606
>UNIPROTKB|F1NSQ5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000012 "single strand break repair" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
GO:GO:0003690 GO:GO:0003697 GO:GO:0006302 GO:GO:0000012
GO:GO:0017005 GeneTree:ENSGT00390000002211 PANTHER:PTHR12415
OMA:WGHLRLR EMBL:AADN02003623 IPI:IPI00587496
Ensembl:ENSGALT00000017359 Uniprot:F1NSQ5
Length = 602
Score = 577 (208.2 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 137/327 (41%), Positives = 187/327 (57%)
Query: 35 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDF----PLKDQNNLS 90
L I+FGTHH+K MLL+Y G+R+++HT+NLI DW+ K+QG+W+ P ++
Sbjct: 246 LDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIAEDWHQKTQGIWLSPLYPRLPQGSSDSAG 305
Query: 91 E-ECGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHT 149
E E F++DLI YL P + V L+ S PG +
Sbjct: 306 ESETNFKSDLISYLMAYSSPVLKEWIDL----------IREHDLSETRVYLLGSTPGRYQ 355
Query: 150 GSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSLD---EKWM-AELXXXXXXX 204
G +KWGH+KLR +L++ ++S P+V QFSS+GSL KW+ +E
Sbjct: 356 GIDKEKWGHLKLRKLLKDHASSIPAQESWPVVGQFSSIGSLGADGSKWLCSEFQESLVAA 415
Query: 205 XXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKAS 262
L P+ +V+PTV +VR SLEGY AG ++P + K +L Y+ KW A
Sbjct: 416 GSGVAALLKCDVPIHLVYPTVSNVRQSLEGYPAGGSLPYSIQTAQKQLWLHSYFHKWSAE 475
Query: 263 HTGRSRAMPHIKTFAR--YNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 320
+GRS AMPHIKT+ R ++ QK+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL
Sbjct: 476 VSGRSHAMPHIKTYMRPSHDFQKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLF 535
Query: 321 LPSAKRHGCGFSCTSNIVPSEIKSGST 347
LPSA G+ + SE K +T
Sbjct: 536 LPSAFGLDKGYFHVKGNMLSEGKDSAT 562
Score = 74 (31.1 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 386 QRYSSEDVPWSWDKRYTKK-DVYGQVW 411
+RY S+D PW W+ YT D +G +W
Sbjct: 573 ERYGSKDQPWIWNIPYTSAPDTHGNMW 599
>RGD|1309618 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO;ISS] InterPro:IPR010347 Pfam:PF06087
RGD:1309618 GO:GO:0005634 GO:GO:0005737 GO:GO:0003690 GO:GO:0003697
GO:GO:0004527 GO:GO:0006302 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775
HOGENOM:HOG000067775 HOVERGEN:HBG061242 OrthoDB:EOG4NP736
EMBL:BC098739 IPI:IPI00367735 RefSeq:NP_001026827.1
UniGene:Rn.12661 ProteinModelPortal:Q4G056 SMR:Q4G056 STRING:Q4G056
PhosphoSite:Q4G056 PRIDE:Q4G056 Ensembl:ENSRNOT00000005167
GeneID:314380 KEGG:rno:314380 UCSC:RGD:1309618 InParanoid:Q4G056
NextBio:667547 Genevestigator:Q4G056 Uniprot:Q4G056
Length = 609
Score = 584 (210.6 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 142/316 (44%), Positives = 187/316 (59%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP AN L + L I+FGTHH+K MLL+Y G+R+++HT+NLI DW+ K+QG+W+ +
Sbjct: 244 KPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLY 303
Query: 82 P-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
P + N+ S E F+ DL YL P + V
Sbjct: 304 PRIYQGNHTSGESSTHFKADLTSYLMAYNAPPLQEWIDI----------IQEHDLSETNV 353
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQEC--TFEKGFKKSPLVYQFSSLGSL--DE-KW 193
LI S PG GS WGH +LR +LQ + +G + P+V QFSS+GSL DE KW
Sbjct: 354 YLIGSTPGRFQGSHKDNWGHFRLRKLLQAHAPSAPRG-ECWPVVGQFSSIGSLGPDESKW 412
Query: 194 M-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD- 250
+ +E E +TP PL +++P+VE+VR SLEGY AG ++P + +K
Sbjct: 413 LCSEFKESLLAVREEGRTPGRSAVPLHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQR 472
Query: 251 FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQ 308
+L Y+ KW A +GRS AMPHIKT+ R + KLAWFL+TSANLSKAAWGAL+KN +Q
Sbjct: 473 WLHPYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFLVTSANLSKAAWGALEKNGAQ 532
Query: 309 LMIRSYELGVLILPSA 324
LMIRSYELGVL LPSA
Sbjct: 533 LMIRSYELGVLFLPSA 548
Score = 66 (28.3 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 388 YSSEDVPWSWDKRYTKK-DVYGQVW 411
Y S+D PW W+ Y K D +G +W
Sbjct: 582 YGSKDRPWIWNIPYVKAPDTHGNMW 606
>UNIPROTKB|F1MST1 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase activity"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:DAAA02030029
IPI:IPI00717294 RefSeq:NP_001180084.1 UniGene:Bt.26165
Ensembl:ENSBTAT00000017463 GeneID:517053 KEGG:bta:517053
NextBio:20872364 Uniprot:F1MST1
Length = 612
Score = 577 (208.2 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 143/339 (42%), Positives = 198/339 (58%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLI DW+ K+QG+W+ +
Sbjct: 247 KPYGNVTLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLY 306
Query: 82 P--LKDQNNLSEEC-GFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
P + + E F+ DLI YL+ +A L V
Sbjct: 307 PRIVHGTHGSGESATNFKADLISYLAAYN----AAPLKEW------IDTIQEHDLSETNV 356
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM 194
LIAS PG G+ WGH +LR +L+E +S P++ QFSS+GS+ DE KW+
Sbjct: 357 YLIASTPGRFQGNQKDNWGHFRLRKLLKEHASPMPKAESWPVIGQFSSIGSMGADESKWL 416
Query: 195 -AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DF 251
+E E +T LG PL +++P+VE+VR SLEGY AG ++P + +K ++
Sbjct: 417 CSEFKESLVTLGKESRT-LGSAAPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNW 475
Query: 252 LKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQL 309
L Y+ KW A +GRS AMPHIKT+ R + ++AWFL+TSANLSKAAWGAL+K+ +QL
Sbjct: 476 LHSYFHKWSADTSGRSNAMPHIKTYLRPSPDFSQIAWFLVTSANLSKAAWGALEKSGTQL 535
Query: 310 MIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTE 348
MIRSYELGVL LPSA F S V + SGS++
Sbjct: 536 MIRSYELGVLFLPSA------FGLDSFKVKQKFFSGSSQ 568
Score = 61 (26.5 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 388 YSSEDVPWSWDKRYTKK-DVYGQVW 411
Y D PW W+ Y K D +G +W
Sbjct: 585 YGDRDRPWIWNIPYVKAPDTHGNMW 609
>UNIPROTKB|F1SDA7 [details] [associations]
symbol:LOC100625067 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 PANTHER:PTHR12415 OMA:WGHLRLR
EMBL:CU633760 Ensembl:ENSSSCT00000002701 Uniprot:F1SDA7
Length = 607
Score = 572 (206.4 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 147/343 (42%), Positives = 198/343 (57%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFP 82
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ P
Sbjct: 242 KPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLS--P 299
Query: 83 LKDQ----NNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXA 136
L + ++ S E F+ DLI YLS ++A
Sbjct: 300 LYQRIVPGSHRSGESATHFKADLISYLSA-----YNA-----AALKEWIDTIQEHDLSET 349
Query: 137 AVRLIASVPGYHTGSSLKKWGHMKLRTVLQE--CTFEKGFKKSPLVYQFSSLGSL--DE- 191
V LI S PG G WGH +LR +L+E + K + P+V QFSS+ S+ DE
Sbjct: 350 NVYLIGSTPGRFQGDQKDNWGHFRLRKLLKENGSSIPKA-ESWPVVGQFSSISSMGADES 408
Query: 192 KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYA-AGNAIPSPQKNVD 248
KW+ +E E +TP G PL +++P+VE+VR SLEGY AG ++P + +
Sbjct: 409 KWLCSEFKESLVTLGKESRTPGG-AVPLHLIYPSVENVRTSLEGYPEAGGSLPYSIQTAE 467
Query: 249 KD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKN 305
K +L Y+ KW A+ +GRS AMPHIKT+ R + ++AWFL+TSANLSKAAWGAL+KN
Sbjct: 468 KQTWLHSYFHKWSAATSGRSNAMPHIKTYMRPSPDFSQIAWFLVTSANLSKAAWGALEKN 527
Query: 306 NSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTE 348
SQLMIRSYELGVL LP+A F S V + SGS E
Sbjct: 528 GSQLMIRSYELGVLFLPAA------FGLDSFRVKQKFFSGSQE 564
Score = 65 (27.9 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 388 YSSEDVPWSWDKRYTKK-DVYGQVW 411
Y S+D PW W+ Y K D +G +W
Sbjct: 580 YGSKDRPWIWNIPYMKAPDTHGNMW 604
>UNIPROTKB|G3V2F4 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 ProteinModelPortal:G3V2F4 SMR:G3V2F4
Ensembl:ENST00000555880 ArrayExpress:G3V2F4 Bgee:G3V2F4
Uniprot:G3V2F4
Length = 578
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 144/322 (44%), Positives = 191/322 (59%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +
Sbjct: 243 KPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLY 302
Query: 82 P-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
P + D + S E F+ DLI YL P + V
Sbjct: 303 PRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDV----------IHKHDLSETNV 352
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM 194
LI S PG GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+
Sbjct: 353 YLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWL 412
Query: 195 -AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DF 251
+E E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++
Sbjct: 413 CSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNW 472
Query: 252 LKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQL 309
L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QL
Sbjct: 473 LHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQL 532
Query: 310 MIRSYELGVLILPSAK-RHGCG 330
MIRSYELGVL LPSA HG G
Sbjct: 533 MIRSYELGVLFLPSAFIGHGYG 554
>UNIPROTKB|Q86TV8 [details] [associations]
symbol:TDP1 "Full-length cDNA clone CS0DI031YK16 of
Placenta of Homo sapiens (human)" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415 EMBL:AL137128
UniGene:Hs.209945 HGNC:HGNC:18884 EMBL:BX161451 IPI:IPI00384157
HSSP:Q9NUW8 SMR:Q86TV8 STRING:Q86TV8 Ensembl:ENST00000357382
UCSC:uc001xya.3 HOGENOM:HOG000147157 HOVERGEN:HBG067466
Uniprot:Q86TV8
Length = 369
Score = 556 (200.8 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 130/293 (44%), Positives = 174/293 (59%)
Query: 45 KAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLI 100
K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E F+ DLI
Sbjct: 26 KMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLI 85
Query: 101 DYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMK 160
YL P + V LI S PG GS WGH +
Sbjct: 86 SYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFR 135
Query: 161 LRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIG 215
L+ +L++ +S P+V QFSS+GSL DE KW+ +E E KTP
Sbjct: 136 LKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSS 195
Query: 216 EPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHI 273
PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHI
Sbjct: 196 VPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHI 255
Query: 274 KTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 324
KT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 256 KTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA 308
Score = 66 (28.3 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 388 YSSEDVPWSWDKRYTKK-DVYGQVW 411
Y S+D PW W+ Y K D +G +W
Sbjct: 342 YGSKDRPWIWNIPYVKAPDTHGNMW 366
>UNIPROTKB|E7EPD8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 IPI:IPI00872094
ProteinModelPortal:E7EPD8 SMR:E7EPD8 Ensembl:ENST00000393452
UCSC:uc010atn.3 ArrayExpress:E7EPD8 Bgee:E7EPD8 Uniprot:E7EPD8
Length = 589
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 150/362 (41%), Positives = 205/362 (56%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +
Sbjct: 243 KPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLY 302
Query: 82 P-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
P + D + S E F+ DLI YL P + V
Sbjct: 303 PRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDV----------IHKHDLSETNV 352
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM 194
LI S PG GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+
Sbjct: 353 YLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWL 412
Query: 195 -AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DF 251
+E E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++
Sbjct: 413 CSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNW 472
Query: 252 LKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQL 309
L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QL
Sbjct: 473 LHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQL 532
Query: 310 MIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAG 369
MIRSYELGVL LPSA F+ I E+++ + + Q Q V L W ++
Sbjct: 533 MIRSYELGVLFLPSA------FAPAKRI-KDEVEASFSGSRQFQSETEV-LRWQPGANGH 584
Query: 370 AS 371
S
Sbjct: 585 LS 586
>UNIPROTKB|H0YJ44 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000556063
Uniprot:H0YJ44
Length = 281
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 94/184 (51%), Positives = 123/184 (66%)
Query: 150 GSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXX 204
GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+ +E
Sbjct: 5 GSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTL 64
Query: 205 XXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKAS 262
E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A
Sbjct: 65 GKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAE 124
Query: 263 HTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 320
+GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL
Sbjct: 125 TSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLF 184
Query: 321 LPSA 324
LPSA
Sbjct: 185 LPSA 188
>WB|WBGene00018678 [details] [associations]
symbol:F52C12.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR001736 InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
GO:GO:0008081 EMBL:FO081438 PIR:A88641 RefSeq:NP_500149.1
ProteinModelPortal:Q9TXV7 STRING:Q9TXV7 PaxDb:Q9TXV7
EnsemblMetazoa:F52C12.1.1 EnsemblMetazoa:F52C12.1.2 GeneID:176996
KEGG:cel:CELE_F52C12.1 UCSC:F52C12.1 CTD:176996 WormBase:F52C12.1
eggNOG:NOG274417 GeneTree:ENSGT00390000002211 HOGENOM:HOG000199611
InParanoid:Q9TXV7 KO:K10862 OMA:VIHTANM NextBio:894908
PANTHER:PTHR12415 Uniprot:Q9TXV7
Length = 451
Score = 375 (137.1 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 108/318 (33%), Positives = 160/318 (50%)
Query: 20 CQRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWM 78
C +N+ ++ LPI FGTHH+K +L G +IV TANL+ DW K+Q +
Sbjct: 109 CTKNQKLVTVVGAS-LPIPFGTHHTKMSILEDEDGRFHVIVSTANLVPDDWEFKTQQFYY 167
Query: 79 QDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAV 138
+F +K + F++DL++YLS + +
Sbjct: 168 -NFGVKIASGTVPRSDFQDDLLEYLSMYR-----------NQLDTWKQLLQKVDFSQISD 215
Query: 139 RLIASVPGYHTGSSLKKWGHMKLRTVLQE-CTFEKGFK---KSPLVYQFSSLGSLDEKWM 194
RLI S PGYHT ++ GH +L +L E F+ ++ + V Q SS+GSL +
Sbjct: 216 RLIFSTPGYHTDPPTQRPGHPRLFRILSEKFPFDASYEHTERCTFVAQCSSIGSLGSAPI 275
Query: 195 AELXXXXXXXXXEDKTPLGIGEPL---IVWPTVEDVRCSLEGYAAGNAIPSPQK-NVDKD 250
E P +P +V+P+VEDVR S +GYA G ++P + +
Sbjct: 276 -NWFRGQFLQSLEGANPSPKQKPAKMYLVFPSVEDVRTSCQGYAGGCSVPYRNSVHARQK 334
Query: 251 FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQ----KNN 306
+L+ KW+++ R+ A+PH KT+ +Y+ + W LLTSANLSKAAWG + KN
Sbjct: 335 WLQGNMCKWRSNAKRRTNAVPHCKTYVKYDKKVAIWQLLTSANLSKAAWGEVSFNKSKNV 394
Query: 307 SQLMIRSYELGVLIL-PS 323
QLMIRS+E+GVLI PS
Sbjct: 395 EQLMIRSWEMGVLITDPS 412
Score = 62 (26.9 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 388 YSSEDVPWSWDKRYTKKDVYGQVW 411
YS+ D P+ DK++ K D+ G +W
Sbjct: 425 YSATDEPFVTDKKHEKPDILGCIW 448
>FB|FBgn0260817 [details] [associations]
symbol:gkt "glaikit" species:7227 "Drosophila melanogaster"
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0045197 "establishment or maintenance of
epithelial cell apical/basal polarity" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
EMBL:AE014134 GO:GO:0006281 GO:GO:0007417 GO:GO:0004527
GO:GO:0090305 InterPro:IPR019406 Pfam:PF10283 GO:GO:0017005
GO:GO:0045197 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 EMBL:AJ277122 EMBL:AY051884
EMBL:AY060810 RefSeq:NP_523465.2 UniGene:Dm.3843
ProteinModelPortal:Q9VQM4 SMR:Q9VQM4 MINT:MINT-1647814
STRING:Q9VQM4 PaxDb:Q9VQM4 PRIDE:Q9VQM4 EnsemblMetazoa:FBtr0077574
GeneID:33530 KEGG:dme:Dmel_CG8825 CTD:33530 FlyBase:FBgn0260817
InParanoid:Q9VQM4 OMA:WGHLRLR OrthoDB:EOG4HMGRD PhylomeDB:Q9VQM4
GenomeRNAi:33530 NextBio:784060 Bgee:Q9VQM4 GermOnline:CG8825
Uniprot:Q9VQM4
Length = 580
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 120/342 (35%), Positives = 169/342 (49%)
Query: 2 GIL---LLLFYQTTWWTLIGCCQRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRI 57
GIL LLL Y L+ + + I K P P F T H+K M L Y G +R+
Sbjct: 206 GILDKPLLLLYGDESPELLSIGKFKQQVTAIRVKMPTP--FATSHTKMMFLGYSDGSMRV 263
Query: 58 IVHTANLIHVDWNNKSQGLWMQD----FPLKDQNNLSEEC-GFENDLIDYLSTLKWPEFS 112
++ TANL DW+N++QGLW+ P+ E GF+ DL+ YL K +
Sbjct: 264 VISTANLYEDDWHNRTQGLWISPKLPALPVDADTGAGESLTGFKQDLMLYLVEYKISQLQ 323
Query: 113 ANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLK--KWGHMKLRTVLQECTF 170
+ V + SVPG H S++ WGH +L ++L +
Sbjct: 324 PWI----------ARIRNSDFSAINVFFLGSVPGGHREGSVRGHPWGHARLASLLAKHAA 373
Query: 171 EKGFKKSPLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLG-IGE--PL-IVWPTVED 226
+ P+V Q SS+GSL A + +D TP+G + + P +++P+ +
Sbjct: 374 PID-DRIPVVCQSSSIGSLGANVQAWIQQDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGN 432
Query: 227 VRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQK 283
V S +G G +P + DK +LK Y +WK+S RSRAMPHIK++ R+N Q
Sbjct: 433 VAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQS 492
Query: 284 LAWFLLTSANLSKAAWGALQKN-NSQ--LMIRSYELGVLILP 322
+ WF+LTSANLSKAAWG KN N Q L I +YE GVL LP
Sbjct: 493 VYWFVLTSANLSKAAWGCFNKNSNIQPCLRIANYEAGVLFLP 534
>UNIPROTKB|G4N013 [details] [associations]
symbol:MGG_06176 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CM001233 GO:GO:0006281
GO:GO:0008081 KO:K10862 PANTHER:PTHR12415 RefSeq:XP_003712058.1
EnsemblFungi:MGG_06176T0 GeneID:2684314 KEGG:mgr:MGG_06176
Uniprot:G4N013
Length = 555
Score = 220 (82.5 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 70/230 (30%), Positives = 110/230 (47%)
Query: 24 KPANWILHKPPLPISFGTHHSKAMLLI-YPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
K N +LH LP FGTHHSK ++L+ + ++I+HTAN+I DW N + G+W+
Sbjct: 165 KHKNVVLHTAFLPEIFGTHHSKMLVLLRHDDTAQVIIHTANMIPKDWTNMTNGIWLSPRL 224
Query: 82 PLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGXXXXX--XXXXXXXXXXXAAVR 139
PL + ++ +EN L + + L A+ +++R
Sbjct: 225 PLLQGQDPADASQYEN-LAEGTGYKFKIDLLNYLRAYDDKRVVCRDLVTNLEKYDFSSIR 283
Query: 140 --LIASVPGYH--TGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLD--EKW 193
LIASVPG H T S WG + ++ L+ + G KS +V Q SS+ +L + W
Sbjct: 284 GTLIASVPGRHDFTDLSTSAWGWVAIKRALRSVPLQVG--KSEVVTQISSIATLGPTDTW 341
Query: 194 MAELXXXXXXXXXEDKTPLGIG-EPL--IVWPTVEDVRCSLEGYAAGNAI 240
L KT G+ P I++PT +++R SL+GY +G +I
Sbjct: 342 ---LQRTLFESMCRGKTT-GVAPRPQFKIIFPTADEIRRSLDGYGSGGSI 387
Score = 165 (63.1 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 32/58 (55%), Positives = 39/58 (67%)
Query: 265 GRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 322
GR+RA PHIKT+ RY + W LL+SANLSK AWG SQ I S+E+GVL+ P
Sbjct: 430 GRNRAAPHIKTYIRYGANSIDWALLSSANLSKQAWGDATGAGSQTRISSWEIGVLVWP 487
Score = 54 (24.1 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 386 QRYSSEDVPWSWDKRYTKKDVYGQVW 411
Q+Y + +VPW Y++ D G W
Sbjct: 530 QKYGNGEVPWVATLSYSEPDWAGNTW 555
>ASPGD|ASPL0000004965 [details] [associations]
symbol:AN5903 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA
phosphodiesterase activity" evidence=IEA] [GO:0000012 "single
strand break repair" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 EMBL:BN001301 EMBL:AACD01000101
GO:GO:0008081 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 OrthoDB:EOG4KD9W6 RefSeq:XP_663507.1
EnsemblFungi:CADANIAT00007130 GeneID:2870818 KEGG:ani:AN5903.2
HOGENOM:HOG000163738 Uniprot:Q5B0M7
Length = 586
Score = 204 (76.9 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 81/278 (29%), Positives = 124/278 (44%)
Query: 20 CQRNKPANWILHKPPLPISFGTHHSKAMLLI-YPRGVRIIVHTANLIHVDWNNKSQGLWM 78
CQR I+ P P FGTHHSK M+L+ + ++++HTAN++ DW + Q +W
Sbjct: 160 CQRYPNVEPIVAYMPEP--FGTHHSKMMILLRHDDFAQVVIHTANMLAGDWGDMCQAIWR 217
Query: 79 QDF-PL----KDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXX 131
PL +D+N+ + G F+ DL+ YL A+G
Sbjct: 218 SPLLPLTDGHEDKNSTAWGTGARFKRDLLAYLK------------AYGVKKTGPLVEQLG 265
Query: 132 XXXXAAVR--LIASVPGYHT-------GSSLKKWGH--MK--LRTV-LQECTFEKGFKKS 177
+AVR LIASVP G+S KWG +K LR V L+E G
Sbjct: 266 KYDFSAVRAALIASVPSKQKVDASSIDGNSKTKWGWPALKEALRNVPLRENVGADGTATV 325
Query: 178 P-LVYQFSSLGSLDE--KWMAELXXXXXXXXXED-KTPLGIGEPLIVWPTVEDVRCSLEG 233
P +V Q SS+ +L + KW+ ++ KT +++PT E++R SL+G
Sbjct: 326 PHIVTQISSIATLGQTDKWLKDVFFNALAASSSSTKTRPRYS---VIFPTAEEIRRSLKG 382
Query: 234 YAAGNAI----PSPQKNVDKDFLKKYWAKWKASHTGRS 267
Y G +I S + +L+ Y W +G++
Sbjct: 383 YGYGGSIHMKLQSAAQKKQLQYLRPYLCHWAGDVSGQA 420
Score = 141 (54.7 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 265 GRSRAMPHIKTFARYNGQKLA---WFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321
GR RA PHIKT+ R+ Q + W L+TSANLS AWGA ++ + S+E+GVL+
Sbjct: 428 GRRRAAPHIKTYIRFADQHMRSIDWALVTSANLSTQAWGAAANAAGEVRVCSWEIGVLVW 487
Query: 322 P 322
P
Sbjct: 488 P 488
Score = 54 (24.1 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 388 YSSEDVPWSWDKRYTKKDVYGQVW 411
YS++D PW + + D GQ W
Sbjct: 547 YSTQDEPWCATMSHIEPDWLGQTW 570
>POMBASE|SPCP31B10.05 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase Tdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000012 "single strand
break repair" evidence=IMP] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 PomBase:SPCP31B10.05 GO:GO:0005634
EMBL:CU329672 GO:GO:0004527 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 PIR:T41695 RefSeq:NP_587861.1 HSSP:P38319
ProteinModelPortal:Q9USG9 STRING:Q9USG9 EnsemblFungi:SPCP31B10.05.1
GeneID:2539579 KEGG:spo:SPCP31B10.05 OrthoDB:EOG4KD9W6
NextBio:20800737 Uniprot:Q9USG9
Length = 536
Score = 232 (86.7 bits), Expect = 6.3e-25, Sum P(3) = 6.3e-25
Identities = 77/212 (36%), Positives = 110/212 (51%)
Query: 136 AAVR--LIASVPGYHTGSSLKKWGHMKLRTVLQ--ECTFEKG----FKKSPL-VYQFSSL 186
+A+R I SVPG G WG KL+ +L+ E +K F++S + + Q SS+
Sbjct: 257 SAIRAIFIGSVPGKFEGEEESSWGLGKLKKILKMLEKDSKKDEKTKFEESDICISQCSSM 316
Query: 187 GSLDEK--WMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI---- 240
GS K ++AEL D G ++PTV++V+ S+ G+ +G++I
Sbjct: 317 GSFGPKQEYIAELT---------DGFGCQRGNWKFLFPTVKEVQQSMLGWQSGSSIHFNI 367
Query: 241 --PSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLTSANLSK 296
+ V+ K KW A GR R PHIKT+ R++ G+ L W L+TSANLSK
Sbjct: 368 LGKTAASQVETLKKGKNLCKWVAMKAGRQRVAPHIKTYMRFSNDGELLRWVLVTSANLSK 427
Query: 297 AAWGALQ----KNNSQ--LMIRSYELGVLILP 322
AWG L+ K+ S L IRSYE GVL+ P
Sbjct: 428 PAWGTLEGHKAKSRSTRGLRIRSYEAGVLLYP 459
Score = 101 (40.6 bits), Expect = 6.3e-25, Sum P(3) = 6.3e-25
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 25 PANWILHKPPLPISFGTHHSKAMLLIYPR-GVRIIVHTANLIHVDWNNKSQGLW 77
P N L+ +P+ +GTHHSK M+ + +I++HTANL+ DW SQ ++
Sbjct: 105 PVNVKLYSVYVPM-WGTHHSKIMVNFFKDDSCQIVIHTANLVEPDWIGMSQAIF 157
Score = 50 (22.7 bits), Expect = 6.3e-25, Sum P(3) = 6.3e-25
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 388 YSSEDVPWSWDKRYTKKDVYGQVWP 412
Y +D WS T KD G VWP
Sbjct: 509 YEDKDEIWSPVINRTDKDWLGYVWP 533
>UNIPROTKB|G3V2J6 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0008081
GO:GO:0000012 PANTHER:PTHR12415 EMBL:AL137128 HGNC:HGNC:18884
ProteinModelPortal:G3V2J6 SMR:G3V2J6 Ensembl:ENST00000553617
ArrayExpress:G3V2J6 Bgee:G3V2J6 Uniprot:G3V2J6
Length = 219
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-F 81
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +
Sbjct: 144 KPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLY 203
Query: 82 P-LKDQNNLSEE 92
P + D + S E
Sbjct: 204 PRIADGTHKSGE 215
>UNIPROTKB|H0YJL7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000557782 Bgee:H0YJL7
Uniprot:H0YJL7
Length = 51
Score = 159 (61.0 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 35 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQG 75
L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG
Sbjct: 3 LDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQG 43
>UNIPROTKB|Q9BRS7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 UniGene:Hs.209945 HGNC:HGNC:18884 HSSP:Q9NUW8
EMBL:BC006083 IPI:IPI01015250 SMR:Q9BRS7 STRING:Q9BRS7
Ensembl:ENST00000545686 Uniprot:Q9BRS7
Length = 298
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 24 KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQG 75
KP N L + L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG
Sbjct: 243 KPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQG 295
>DICTYBASE|DDB_G0273869 [details] [associations]
symbol:DDB_G0273869 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 103 (41.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 283 KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321
K W S N S +AWGA QKN SQ+ I ++E+GVL+L
Sbjct: 655 KYDWVYTGSHNFSLSAWGAFQKNESQVSISNFEIGVLLL 693
Score = 97 (39.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 33 PPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNN 88
PPL ++ +HSK M+ + VR+++ ++N D++ Q +W QDF K NN
Sbjct: 293 PPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 137 AVRLIASVPGYH 148
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
>DICTYBASE|DDB_G0273125 [details] [associations]
symbol:DDB_G0273125 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 103 (41.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 283 KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321
K W S N S +AWGA QKN SQ+ I ++E+GVL+L
Sbjct: 655 KYDWVYTGSHNFSLSAWGAFQKNESQVSISNFEIGVLLL 693
Score = 97 (39.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 33 PPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNN 88
PPL ++ +HSK M+ + VR+++ ++N D++ Q +W QDF K NN
Sbjct: 293 PPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 137 AVRLIASVPGYH 148
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 423 385 0.00092 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 632 (67 KB)
Total size of DFA: 304 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.46u 0.32s 26.78t Elapsed: 00:00:02
Total cpu time: 26.46u 0.32s 26.78t Elapsed: 00:00:02
Start: Sat May 11 03:22:45 2013 End: Sat May 11 03:22:47 2013