BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014528
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase
pdb|1QZQ|B Chain B, Human Tyrosyl Dna Phosphodiesterase
Length = 483
Score = 227 bits (579), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 154/391 (39%), Positives = 208/391 (53%), Gaps = 54/391 (13%)
Query: 35 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEE 92
L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E
Sbjct: 130 LDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGE 189
Query: 93 --CGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTG 150
F+ DLI YL P + V LI S PG G
Sbjct: 190 SPTHFKADLISYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQG 239
Query: 151 SSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL---DEKWM-AELXXXXXXXX 205
S WGH +L+ +L++ +S P+V QFSS+GSL + KW+ +E
Sbjct: 240 SQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLG 299
Query: 206 XEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIP-SPQKNVDKDFLKKYWAKWKASH 263
E KTP PL +++P+VE+VR SLEGY AG ++P S Q +++L Y+ KW A
Sbjct: 300 KESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAET 359
Query: 264 TGRSRAMPHIKTFARY--NGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321
+GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL L
Sbjct: 360 SGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFL 419
Query: 322 PSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSXXXXXXXXX 381
PSA F S V + +GS E + T
Sbjct: 420 PSA------FGLDSFKVKQKFFAGSQEP-------MATFP-----------------VPY 449
Query: 382 XXXXQRYSSEDVPWSWDKRYTKK-DVYGQVW 411
+ Y S+D PW W+ Y K D +G +W
Sbjct: 450 DLPPELYGSKDRPWIWNIPYVKAPDTHGNMW 480
>pdb|1MU7|A Chain A, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU7|B Chain B, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU9|A Chain A, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1MU9|B Chain B, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1NOP|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1NOP|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1RFF|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFF|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFI|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RFI|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RG1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG1|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG2|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RG2|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RGT|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGT|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGU|A Chain A, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RGU|B Chain B, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RH0|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
pdb|1RH0|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
Length = 485
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 208/391 (53%), Gaps = 54/391 (13%)
Query: 35 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEE 92
L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E
Sbjct: 132 LDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGE 191
Query: 93 --CGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTG 150
F+ +LI YL+ P + V LI S PG G
Sbjct: 192 SPTHFKANLISYLTAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQG 241
Query: 151 SSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL---DEKWM-AELXXXXXXXX 205
S WGH +L+ +L++ +S P+V QFSS+GSL + KW+ +E
Sbjct: 242 SQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLG 301
Query: 206 XEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIP-SPQKNVDKDFLKKYWAKWKASH 263
E KTP PL +++P+VE+VR SLEGY AG ++P S Q +++L Y+ KW A
Sbjct: 302 KESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAET 361
Query: 264 TGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321
+GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL L
Sbjct: 362 SGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFL 421
Query: 322 PSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSXXXXXXXXX 381
PSA S V + +GS E + T
Sbjct: 422 PSA------LGLDSFKVKQKFFAGSQEP-------MATFP-----------------VPY 451
Query: 382 XXXXQRYSSEDVPWSWDKRYTKK-DVYGQVW 411
+ Y S+D PW W+ Y K D +G +W
Sbjct: 452 DLPPELYGSKDRPWIWNIPYVKAPDTHGNMW 482
>pdb|1JY1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)
Length = 464
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 203/391 (51%), Gaps = 54/391 (13%)
Query: 35 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEE 92
L I+FGTHH+K LL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E
Sbjct: 111 LDIAFGTHHTKXXLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGE 170
Query: 93 --CGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTG 150
F+ +LI YL+ P + V LI S PG G
Sbjct: 171 SPTHFKANLISYLTAYNAPSLKEWI----------DVIHKHDLSETNVYLIGSTPGRFQG 220
Query: 151 SSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL---DEKWM-AELXXXXXXXX 205
S WGH +L+ +L++ +S P+V QFSS+GSL + KW+ +E
Sbjct: 221 SQKDNWGHFRLKKLLKDHASSXPNAESWPVVGQFSSVGSLGADESKWLCSEFKESXLTLG 280
Query: 206 XEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIP-SPQKNVDKDFLKKYWAKWKASH 263
E KTP PL +++P+VE+VR SLEGY AG ++P S Q +++L Y+ KW A
Sbjct: 281 KESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAET 340
Query: 264 TGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321
+GRS A PHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QL IRSYELGVL L
Sbjct: 341 SGRSNAXPHIKTYXRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLXIRSYELGVLFL 400
Query: 322 PSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSXXXXXXXXX 381
PSA S V + +GS E
Sbjct: 401 PSA------LGLDSFKVKQKFFAGSQEPXATFPVPY------------------------ 430
Query: 382 XXXXQRYSSEDVPWSWDKRYTKK-DVYGQVW 411
+ Y S+D PW W+ Y K D +G W
Sbjct: 431 DLPPELYGSKDRPWIWNIPYVKAPDTHGNXW 461
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 282 QKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVL 319
++L W L TSANLS+ AWG + + R+YE GVL
Sbjct: 454 KELEWCLYTSANLSQTAWGTVSRKP-----RNYEAGVL 486
>pdb|3SQ7|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
Length = 470
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 282 QKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVL 319
++L W L TSANLS+ AWG + + R+YE GVL
Sbjct: 377 KELEWCLYTSANLSQTAWGTVSRKP-----RNYEAGVL 409
>pdb|3SQ5|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
Length = 470
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 282 QKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVL 319
++L W L TSANLS+ AWG + + R+YE GVL
Sbjct: 377 KELEWCLYTSANLSQTAWGTVSRKP-----RNYEAGVL 409
>pdb|3SQ3|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
Length = 470
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 282 QKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVL 319
++L W L TSANLS+ AWG + + R+YE GVL
Sbjct: 377 KELEWCLYTSANLSQTAWGTVSRKP-----RNYEAGVL 409
>pdb|3SQ8|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
Length = 470
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 282 QKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVL 319
++L W L TSANLS+ AWG + + R+YE GVL
Sbjct: 377 KELEWCLYTSANLSQTAWGTVSRKP-----RNYEAGVL 409
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 271 PHIKTFARYNGQKLAWFLLTSANLSKAAWGALQK--NNSQLMIRSYELGVLILPSAKR 326
P +AR++ +L+ +L L+KA+W LQ+ ++S+ ++EL +LP R
Sbjct: 294 PLFTEWARFSNTRLSQTMLGHVGLNKASWKGLQREQSSSEDTDAAFELNSQLLPQENR 351
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 15 TLIGCCQRNKPANWILH----KPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN 70
TLI CC KP+ + H P P + T+ + + RGVR +V +
Sbjct: 8 TLIDCCDPQKPSRVLFHFLILDAPSPSNLPTYIKE----LQHRGVRHLVRVCGPTYDATL 63
Query: 71 NKSQGLWMQDFPLKD 85
KS+G+ + +P D
Sbjct: 64 VKSRGIDVHSWPFDD 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,511,906
Number of Sequences: 62578
Number of extensions: 480102
Number of successful extensions: 1071
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1040
Number of HSP's gapped (non-prelim): 18
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)