Query 014528
Match_columns 423
No_of_seqs 156 out of 335
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 7E-101 2E-105 798.9 26.1 370 3-414 78-464 (464)
2 3sq7_A Tyrosyl-DNA phosphodies 100.0 4.2E-88 1.4E-92 698.8 19.1 328 25-401 88-465 (470)
3 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 6.2E-88 2.1E-92 708.8 16.5 347 4-403 139-543 (544)
4 1byr_A Protein (endonuclease); 88.4 0.4 1.4E-05 40.8 4.2 38 269-321 91-128 (155)
5 4ggj_A Mitochondrial cardiolip 85.4 0.95 3.2E-05 40.9 5.2 38 268-320 120-157 (196)
6 1byr_A Protein (endonuclease); 84.6 2.6 8.9E-05 35.5 7.4 39 39-80 90-129 (155)
7 3hsi_A Phosphatidylserine synt 84.0 0.69 2.3E-05 47.6 3.9 40 267-321 359-398 (458)
8 1v0w_A Phospholipase D; hydrol 72.6 2.2 7.5E-05 44.0 3.6 31 38-71 162-192 (506)
9 4gel_A Mitochondrial cardiolip 68.0 3 0.0001 37.6 3.1 44 267-321 131-190 (220)
10 4ggj_A Mitochondrial cardiolip 61.1 4.7 0.00016 36.2 2.9 40 38-80 119-159 (196)
11 2c1l_A Restriction endonucleas 55.8 13 0.00046 35.3 5.0 59 12-79 80-138 (358)
12 1v0w_A Phospholipase D; hydrol 52.3 10 0.00034 39.0 4.0 37 39-80 436-472 (506)
13 1xdp_A Polyphosphate kinase; P 42.0 22 0.00075 38.4 4.8 42 269-321 431-475 (687)
14 3hsi_A Phosphatidylserine synt 39.0 16 0.00053 37.4 2.9 40 38-80 359-399 (458)
15 1xdp_A Polyphosphate kinase; P 37.3 23 0.00077 38.3 4.0 99 177-321 530-628 (687)
16 2c1l_A Restriction endonucleas 27.6 50 0.0017 31.4 4.0 59 249-320 82-141 (358)
17 1jy1_A TDP1, tyrosyl-DNA phosp 24.7 47 0.0016 34.0 3.6 34 269-303 116-149 (464)
18 2o8r_A Polyphosphate kinase; s 22.0 36 0.0012 36.8 2.1 42 268-321 593-634 (705)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=6.8e-101 Score=798.93 Aligned_cols=370 Identities=42% Similarity=0.759 Sum_probs=306.1
Q ss_pred ceEEEEEecCch---hhhhhhhccCCCcEEEEcCCCCCCCCccccceeeeeeCCceEEEEeCCCCCccccccccceEEee
Q 014528 3 ILLLLFYQTTWW---TLIGCCQRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQ 79 (423)
Q Consensus 3 ~~~~~~~~~~~~---~~~~~~~~~~~~n~~~~~p~mp~~fG~hHSKmmll~y~d~lRVVI~SANL~~~DW~~~tQ~vW~q 79 (423)
..++|++|++.. ++.+..+ ..+||++|+|+||.+|||||||||||+|+||||||||||||++.||+++||+||+|
T Consensus 78 ~~v~iv~g~~~~~~~~l~~~~~--~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TANL~~~DW~~~tQ~vW~s 155 (464)
T 1jy1_A 78 KPILLVHGDKREAKAHLHAQAK--PYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLS 155 (464)
T ss_dssp SCEEEEECCCHHHHHHHHHHHT--TCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCCBSGGGGTSSBCEEEEC
T ss_pred CcEEEEeCCCcccchhhHHhhc--cCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCCCChhHhccccceEEec
Confidence 368899998663 3443333 47799999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCCCCCC---CCCCCCcHHHHHHHHHhCCCCccccCCCCCCCccccccccccccccccceeEEEccCCCCCCCccch
Q 014528 80 D-FPLKDQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKK 155 (423)
Q Consensus 80 d-fP~~~~~~---~~~~~~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~~v~LV~SVPG~h~g~~~~~ 155 (423)
| ||++...+ .+++++|++||++||++|+.+.... ++++|++||||.++|+||+||||+|.|.+..+
T Consensus 156 d~lP~~~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~LVaSvPG~h~~~~~~~ 225 (464)
T 1jy1_A 156 PLYPRIADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVYLIGSTPGRFQGSQKDN 225 (464)
T ss_dssp CCBCBCCTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSEEEEECSEEEEGGGGGG
T ss_pred ccCcCCCccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcEEEEeCCcCCcCCcchh
Confidence 9 78765433 3678999999999999999764332 25889999999999999999999999999999
Q ss_pred hcHHHHHHHHhhcCccC-CCcccCeEEEecCCCCCc---hHHH-HHHHHhccCCCCCCCCC-CCCCCCeEEccChhhhhc
Q 014528 156 WGHMKLRTVLQECTFEK-GFKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LGIGEPLIVWPTVEDVRC 229 (423)
Q Consensus 156 ~G~~~L~~~L~~~~~~~-~~~~~~i~~Q~SSiGsl~---~~wl-~~~~~sl~~~~~~~~~~-~~~~~~~iifPT~~~V~~ 229 (423)
|||++|+++|++++... ..+..+|+||+||||+++ .+|| ++|..+|.+...+.+.+ ...++++|||||+||||+
T Consensus 226 ~G~~~L~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~~~~~~iifPT~e~Vr~ 305 (464)
T 1jy1_A 226 WGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRT 305 (464)
T ss_dssp SHHHHHHHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------CCCEEEECCBHHHHHT
T ss_pred hhHHHHHHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccCCCceEEEcCCHHHHHh
Confidence 99999999999987542 225789999999999997 5899 68999987643221111 234679999999999999
Q ss_pred CcccCcCCccccCCCccch-hHHHHHHHhhhcCCCCCCCCCCCcceeeeeecC--CceeEEEEeccccchhhhhccccCC
Q 014528 230 SLEGYAAGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLTSANLSKAAWGALQKNN 306 (423)
Q Consensus 230 S~~G~~~gg~i~~~~~~~~-~~~l~~~~~kw~~~~~~R~~~~PH~K~y~r~~~--~~~~W~lltSaNLS~aAWG~~~k~~ 306 (423)
|.+|+.+|||||++.+.++ +.|++++||+|+++.++|++++||||+|+|+++ ..++|+|+||||||+||||++++++
T Consensus 306 S~~G~~~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~pHiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~ 385 (464)
T 1jy1_A 306 SLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNG 385 (464)
T ss_dssp SSSCGGGGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTT
T ss_pred cccccCCcceeeccchhhhhhhhhHHHHHHhccCccCCCCcCCceeeEEecCCCCCeecEEEEccccCCHHHhCccccCC
Confidence 9999999999999865544 569999999999999999999999999999985 4799999999999999999999999
Q ss_pred ceeeeeeeeeeeEEcCCcccCCCccccccCCCCccccCCCccchhhhcceeeeeecCCCCCCCCCCcccccccccCCCCC
Q 014528 307 SQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQ 386 (423)
Q Consensus 307 ~ql~irnyElGVl~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~ 386 (423)
+||+||||||||||+|....+. .+.+... . . +. .....+.+||||++|++
T Consensus 386 ~~l~I~nyElGVl~~P~~~~~~-~~~~~~~--------------------~----~--~~---~~~~~~~~~vPy~lP~~ 435 (464)
T 1jy1_A 386 TQLMIRSYELGVLFLPSALGLD-SFKVKQK--------------------F----F--AG---SQEPMATFPVPYDLPPE 435 (464)
T ss_dssp TEEEECSBEEEEEECGGGGTCS-CEEEC----------------------------------------CEECCSSCSSCC
T ss_pred CceeEeeeeeeEEEeccccccc-ccccCcc--------------------c----c--cc---ccCcccceeecCCCCCc
Confidence 9999999999999999875322 1211000 0 0 00 01224689999999999
Q ss_pred CCCCCCCCceecCCCCCc-cCCCCCCccc
Q 014528 387 RYSSEDVPWSWDKRYTKK-DVYGQVWPRH 414 (423)
Q Consensus 387 ~Y~~~D~Pw~~~~~y~~~-D~~G~~w~~~ 414 (423)
||+++|+||+++++|.+| |++|++|++.
T Consensus 436 ~Y~~~D~Pw~~~~~~~~~~D~~G~~w~p~ 464 (464)
T 1jy1_A 436 LYGSKDRPWIWNIPYVKAPDTHGNMWVPS 464 (464)
T ss_dssp BCCTTCCBCCTTSCBCSSCCTTSCCBCCC
T ss_pred CCCCCCCCeeCCCCCCCcccCCcCcCCCC
Confidence 999999999999999997 9999999873
No 2
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=4.2e-88 Score=698.78 Aligned_cols=328 Identities=21% Similarity=0.327 Sum_probs=264.4
Q ss_pred CCcEEEEcCCCCCCCCccccceeeeeeCCc-eEEEEeCCCCCccccccccceEEeeccCCCCCCCCCCCCCcHHHHHHHH
Q 014528 25 PANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYL 103 (423)
Q Consensus 25 ~~n~~~~~p~mp~~fG~hHSKmmll~y~d~-lRVVI~SANL~~~DW~~~tQ~vW~qdfP~~~~~~~~~~~~F~~dL~~yL 103 (423)
.+||++|.|+|| +|||||||||||+|+|| ||||||||||+++||+..||+||.+ |++.......+++|++||++||
T Consensus 88 ~~nv~~i~~~mP-~fGthHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W~~--P~l~~~~~~~~s~Fk~dL~~yL 164 (470)
T 3sq7_A 88 LKKVKLIEITMP-PFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCS--PLLKIGKEGLPVPFKRSLIEYL 164 (470)
T ss_dssp HTTEEEEEECCC-TTCCBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEEEC--CCEEECCCCSCCHHHHHHHHHH
T ss_pred cCCceEEecCCC-CcCCccceeEEEEecCCCEEEEEecCCCChhhhcccceEEEEc--cCCcCCCCCCCCccHHHHHHHH
Confidence 459999999999 99999999999999988 9999999999999999999999954 5443222345679999999999
Q ss_pred HhCCCCccccCCCCCCCcccccccccccccccc-ceeEEEccCCCCCCCccchhcHHHHHHHHhhcCccC--CCcccCeE
Q 014528 104 STLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK--GFKKSPLV 180 (423)
Q Consensus 104 ~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~-~v~LV~SVPG~h~g~~~~~~G~~~L~~~L~~~~~~~--~~~~~~i~ 180 (423)
++|+.+... +.+++.|++||||.+ +|+||+||||+|. +|||+||+++|+++.... ..++++|+
T Consensus 165 ~~y~~~~l~---------~~~i~~l~~~DFS~~~~v~lV~SvPG~~~-----~~G~~~L~~~L~~~~~~~~~~~~~~~iv 230 (470)
T 3sq7_A 165 NSYHLKDID---------ELITKSVEEVNFAPLSELEFVYSTPSKFQ-----SSGLLSFYNKLEKLSAGTSASDTAKHYL 230 (470)
T ss_dssp HTTCCHHHH---------HHTHHHHHTEECGGGTTCEEEEECCCTTS-----CCHHHHHHHHHHHHTTTCCCCSSCEEEE
T ss_pred HHhCCchhH---------HHHHHHHHhCCCCCCCcEEEEEecCCCCc-----cchHHHHHHHHHHhccCCCcccCCCcEE
Confidence 999987531 112688999999999 5999999999984 689999999999987642 23578999
Q ss_pred EEecCCCC-Cch----HHHHHHHH-hccCCCCC------CC----CC----------CCCCCCeEEccChhhhhcCcccC
Q 014528 181 YQFSSLGS-LDE----KWMAELSS-SMSSGFSE------DK----TP----------LGIGEPLIVWPTVEDVRCSLEGY 234 (423)
Q Consensus 181 ~Q~SSiGs-l~~----~wl~~~~~-sl~~~~~~------~~----~~----------~~~~~~~iifPT~~~V~~S~~G~ 234 (423)
||+||||+ ++. +||++.++ +|++.... .+ .+ ....+++|||||+||||+|.+||
T Consensus 231 ~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTveeVr~S~~Gy 310 (470)
T 3sq7_A 231 CQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKW 310 (470)
T ss_dssp EECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHTTEEEEEECCBTGGGTTSTTGG
T ss_pred EEeCCcccCCCCccchhHHHHHHHHHhhcccCccccccccccccccCCccchhhhhccCCCCeEEEcCCHHHHhcCcccc
Confidence 99999999 984 68887544 44432111 01 01 01346899999999999999999
Q ss_pred cCCccccCCCccch--hHHHH---HHHhhhcCC--CCCCCCCCCcceeeeeecC------------CceeEEEEeccccc
Q 014528 235 AAGNAIPSPQKNVD--KDFLK---KYWAKWKAS--HTGRSRAMPHIKTFARYNG------------QKLAWFLLTSANLS 295 (423)
Q Consensus 235 ~~gg~i~~~~~~~~--~~~l~---~~~~kw~~~--~~~R~~~~PH~K~y~r~~~------------~~~~W~lltSaNLS 295 (423)
.+|||||++.++.. +.|++ ++||||+++ ..+|++++||||||+|++. +.++||||||||||
T Consensus 311 ~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~~~~R~~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLS 390 (470)
T 3sq7_A 311 SSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPANSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLS 390 (470)
T ss_dssp GGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEEC--------CCTTSEESEEEEESCCBS
T ss_pred ccCceeeecccchHHHHHHHhcccceEecccCcCCCCCCCCcCCceEEEEEecccccccccccCCCceeeEEEEecccCC
Confidence 99999999965543 26777 799999886 5689999999999999874 47999999999999
Q ss_pred hhhhhccccCCceeeeeeeeeeeEEcCCcccCCCccccccCCCCccccCCCccchhhhcceeeeeecCCCCCCCCCCccc
Q 014528 296 KAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVV 375 (423)
Q Consensus 296 ~aAWG~~~k~~~ql~irnyElGVl~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (423)
|||||+++| +||||||||||+|..+.+..++.|.++.+.+. +.+ ...+
T Consensus 391 kaAWG~l~k-----~irsYElGVL~~p~~~~~~~~~~~~~~~~~~~-----------------------~~~----~~~~ 438 (470)
T 3sq7_A 391 QTAWGTVSR-----KPRNYEAGVLYHSRRLANTRKVTCRTFTRDRR-----------------------GCA----GNPT 438 (470)
T ss_dssp HHHHCCSSS-----CCSSBEEEEEEEGGGSSSSCCEEEEEGGGC----------------------------------CC
T ss_pred HHHhhhhcc-----CCcceeeeEEEccccccccceeeccccccccc-----------------------ccc----CCCc
Confidence 999999987 68999999999999876665666766543210 000 1246
Q ss_pred ccccccCCCCCCCCCC-CCCceecCCC
Q 014528 376 YLPVPYELPPQRYSSE-DVPWSWDKRY 401 (423)
Q Consensus 376 ~~~vPy~lP~~~Y~~~-D~Pw~~~~~y 401 (423)
.|||||+||++||+++ |+|||....|
T Consensus 439 ~~~vPf~lP~~~Y~~~~D~p~~~~~~~ 465 (470)
T 3sq7_A 439 HVAVPFTLPVIPYDLAEDECFCLALEH 465 (470)
T ss_dssp SEEESSCSSCEECCTTTCCBCCCCCTT
T ss_pred eeeecCCCCCccCCCCCCcceeeehhh
Confidence 7999999999999999 9999987765
No 3
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=6.2e-88 Score=708.79 Aligned_cols=347 Identities=20% Similarity=0.269 Sum_probs=263.1
Q ss_pred eEEEEEecCc---hhh---hhhhhccCCCcEEEEcCCCCCCCCccccceeeeeeCCc-eEEEEeCCCCCccccccccceE
Q 014528 4 LLLLFYQTTW---WTL---IGCCQRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGL 76 (423)
Q Consensus 4 ~~~~~~~~~~---~~~---~~~~~~~~~~n~~~~~p~mp~~fG~hHSKmmll~y~d~-lRVVI~SANL~~~DW~~~tQ~v 76 (423)
.++|+||... ++. .+.+++ .++||++|+|+||. |||||||||||+|+|| ||||||||||++.||+++||+|
T Consensus 139 ~v~iv~g~~~~~~~~r~~~~~~~~~-~~~nv~l~~p~mp~-fGthHSKmmlL~y~dg~lRVVI~TANLi~~DW~~~tQ~v 216 (544)
T 1q32_A 139 NITIVGQKGTIMPIEARAMDATLAV-ILKKVKLIEITMPP-FASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVC 216 (544)
T ss_dssp EEEEEEETTCEECCCGGGCCHHHHH-HHTTEEEEEECCCT-TCCBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBCEE
T ss_pred cEEEEecCCcCCchhhhhhhHHhhc-cCCCeEEEeCCCCC-CCCCCceeEEEEecCCCEEEEEeCCCCChHHhccccceE
Confidence 5788998743 221 122222 25699999999998 9999999999999998 9999999999999999999999
Q ss_pred EeeccCCCCCCCCCCCCCcHHHHHHHHHhCCCCccccCCCCCCCcccccccccccccccc-ceeEEEccCCCCCCCccch
Q 014528 77 WMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKK 155 (423)
Q Consensus 77 W~qdfP~~~~~~~~~~~~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~-~v~LV~SVPG~h~g~~~~~ 155 (423)
|+|||+.+. +...+++|++||++||++|+.+....+ | ++.|++||||.+ +|+||+||||+|.|
T Consensus 217 W~sp~lp~~--s~g~~~~Fk~dL~~yL~ay~~~~l~~~--------i-i~~l~~~DFS~~~~v~lV~SvPG~h~~----- 280 (544)
T 1q32_A 217 WCSPLLKIG--KEGLPVPFKRSLIEYLNSYHLKDIDEL--------I-TKSVEEVNFAPLSELEFVYSTPSKFQS----- 280 (544)
T ss_dssp EECCCEEEC--CCSSCCHHHHHHHHHHHTTCCHHHHHH--------T-HHHHHTEECGGGTTCEEEEECCCTTSC-----
T ss_pred EECCccccc--CCCCCCchHHHHHHHHHHcCCcccchH--------H-HHHHHhcCcccCCceEEEEecCCccCC-----
Confidence 999954322 234578999999999999998653322 1 588999999999 99999999999998
Q ss_pred hcHHHHHHHHhhcC--ccCCCcccCeEEEecCCCC-Cc-hHHHHHHHHhccC---CC-----CC-CCCC-----------
Q 014528 156 WGHMKLRTVLQECT--FEKGFKKSPLVYQFSSLGS-LD-EKWMAELSSSMSS---GF-----SE-DKTP----------- 211 (423)
Q Consensus 156 ~G~~~L~~~L~~~~--~~~~~~~~~i~~Q~SSiGs-l~-~~wl~~~~~sl~~---~~-----~~-~~~~----------- 211 (423)
|||++|+++|++++ +....++.+|+||+||||+ ++ ++||++|..++.+ |. .. ...+
T Consensus 281 ~G~~~L~~~L~~~~~~~~~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~~~~~~~~~~k~~~~~~~~l~ 360 (544)
T 1q32_A 281 SGLLSFYNKLEKLSAGTSASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLI 360 (544)
T ss_dssp CHHHHHHHHHHHTC------CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHH
T ss_pred ccHHHHHHHHHHhhccCCCCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccccccCcccccccccccccccchhc
Confidence 59999999999987 3333346899999999999 66 6887666554421 21 11 0000
Q ss_pred ----CCCCCCeEEccChhhhhcCcccCcCCccccCCCc---cchhHHHHHHHhhhcC----CCCCCCCCCCcceeeeeec
Q 014528 212 ----LGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQK---NVDKDFLKKYWAKWKA----SHTGRSRAMPHIKTFARYN 280 (423)
Q Consensus 212 ----~~~~~~~iifPT~~~V~~S~~G~~~gg~i~~~~~---~~~~~~l~~~~~kw~~----~~~~R~~~~PH~K~y~r~~ 280 (423)
....+++|||||++|||+|.+|+.+|||||++.+ +..++|+++++|+|+. ..++|+++|||||+|+|++
T Consensus 361 ~~~~~~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~s~R~~a~PHiKty~r~~ 440 (544)
T 1q32_A 361 NEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPAHSKFYMHCA 440 (544)
T ss_dssp HHHHHHTEEEEEECCBSGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEE
T ss_pred ccccccCCCceEEcCCHHHHhhcccccCccceEEeccchhhhhhhHHHhhhhhhccCCCccccCCCCCccCceEEEEeec
Confidence 0134689999999999999999999999998643 2335799999999987 5779999999999999986
Q ss_pred ------------CCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCCcc-cCCC--ccccccCCCCccccCC
Q 014528 281 ------------GQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAK-RHGC--GFSCTSNIVPSEIKSG 345 (423)
Q Consensus 281 ------------~~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~~P~~~-~~~~--~~~~~~~~~~~~~~~~ 345 (423)
.+.++|+||||||||+||||++++ +|||||||||| |..+ .+.. .++|...
T Consensus 441 ~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k-----~irnyElGVL~-P~~~~~~~~~~~~p~~~~--------- 505 (544)
T 1q32_A 441 TNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSR-----KPRNYEAGVLY-HSRRLANTRKVTCRTFTR--------- 505 (544)
T ss_dssp ECC-------CTTSEESEEEEESCCBSHHHHCCSSS-----CCSSBEEEEEE-EGGGC---CCEEEEEGGG---------
T ss_pred cccccccccCCCccceeEEEEccccCCHHHhhhhhc-----cccceEeEEEe-cccccccccceecccccc---------
Confidence 257999999999999999999886 69999999999 6542 1111 1111100
Q ss_pred CccchhhhcceeeeeecCCCCCCCCCCcccccccccCCCCCCCCCCCCCceecCCCCC
Q 014528 346 STETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTK 403 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~D~Pw~~~~~y~~ 403 (423)
+.- +.....+.+||||+||++||+++|+||+++.+|.+
T Consensus 506 -------------------d~~-~~~~~~~~~~vPydlP~~~Y~~~D~Pw~~~~~~~~ 543 (544)
T 1q32_A 506 -------------------DRR-GCAGNPTHVAVPFTLPVIPYDLAEDECFCLARHEN 543 (544)
T ss_dssp -------------------C--------CCSEEESSCSSCEECCTTTCCBCCC-----
T ss_pred -------------------cCc-ccccCcccccccCCCCcccCCCCCCCccccccccc
Confidence 000 00012367999999999999999999999999964
No 4
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=88.35 E-value=0.4 Score=40.79 Aligned_cols=38 Identities=29% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 014528 269 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321 (423)
Q Consensus 269 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~~ 321 (423)
...|.|+++..+ .++++||+|++..+.. .|.|++|++.
T Consensus 91 ~~~H~K~~iiD~----~~~~iGS~N~~~~~~~-----------~n~E~~~~i~ 128 (155)
T 1byr_A 91 PIQHDKVIIVDN----VTVETGSFNFTKAAET-----------KNSENAVVIW 128 (155)
T ss_dssp SCCCCCEEEETT----TEEEEESCCBSHHHHH-----------TSCEEEEEEE
T ss_pred ccccceEEEECC----CEEEEECCCCCccccc-----------cCcccEEEEc
Confidence 467999998632 3799999999987543 4789999884
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=85.38 E-value=0.95 Score=40.87 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=30.2
Q ss_pred CCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 014528 268 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 320 (423)
Q Consensus 268 ~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~ 320 (423)
...+|.|+++-.+ .++++||+|+|..|.. .|+|.++++
T Consensus 120 ~~~~H~K~~viD~----~~~~~GS~N~t~~~~~-----------~n~E~~~~i 157 (196)
T 4ggj_A 120 LGYMHHKFAIVDK----KVLITGSLNWTTQAIQ-----------NNRENVLIM 157 (196)
T ss_dssp SSCCCCEEEEETT----TEEEEESCCBCHHHHH-----------HCCEEEEEE
T ss_pred cccccCcEEEEcc----eEEEecCccCChhhhc-----------ccceeEEEE
Confidence 3567999988632 3799999999998864 478999887
No 6
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=84.58 E-value=2.6 Score=35.54 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCccccceeeeeeCCceEEEEeCCCCCccccc-cccceEEeec
Q 014528 39 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 80 (423)
Q Consensus 39 fG~hHSKmmll~y~d~lRVVI~SANL~~~DW~-~~tQ~vW~qd 80 (423)
.+.+|+|++|. |+-.++|.|+|++..... +.+.++.+.+
T Consensus 90 ~~~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~~ 129 (155)
T 1byr_A 90 FPIQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIWN 129 (155)
T ss_dssp SSCCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEES
T ss_pred cccccceEEEE---CCCEEEEECCCCCccccccCcccEEEEcC
Confidence 57899999998 677899999999976432 3445665554
No 7
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=83.98 E-value=0.69 Score=47.61 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=32.7
Q ss_pred CCCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 014528 267 SRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321 (423)
Q Consensus 267 ~~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~~ 321 (423)
++...|.|+++-.. .|+++||+||...++. .|+|+||++.
T Consensus 359 ~~~~lHaK~~vvD~----~~~~vGS~N~d~RS~~-----------lN~E~~~~i~ 398 (458)
T 3hsi_A 359 GDNTYHLKGVWVDD----RYILLTGNNLNPRAWR-----------LDAENGLLIY 398 (458)
T ss_dssp TTBEECCCEEEETT----TEEEEECCCCSHHHHH-----------TCEEEEEEEE
T ss_pred CCCceeEEEEEECC----eEEEecCCCCCcchhh-----------hCceeEEEEe
Confidence 45678999988643 4899999999988773 5899999985
No 8
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=72.62 E-value=2.2 Score=44.03 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCcccccc
Q 014528 38 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN 71 (423)
Q Consensus 38 ~fG~hHSKmmll~y~d~lRVVI~SANL~~~DW~~ 71 (423)
+++.||.|+++. ||-.++|.++|++..+|-.
T Consensus 162 ~~~r~H~K~~Vi---D~~~a~~Gg~Nl~~d~y~~ 192 (506)
T 1v0w_A 162 AFSWNHSKILVV---DGQSALTGGINSWKDDYLD 192 (506)
T ss_dssp TTBCBCCCEEEE---TTTEEEEESCCCCHHHHTS
T ss_pred ccccceeeEEEE---CCcEEEeeccccCcccccc
Confidence 578999999999 8888999999998655543
No 9
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=68.05 E-value=3 Score=37.58 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=30.8
Q ss_pred CCCCCcceeeeeecC----------------CceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 014528 267 SRAMPHIKTFARYNG----------------QKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321 (423)
Q Consensus 267 ~~~~PH~K~y~r~~~----------------~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~~ 321 (423)
....+|.|+.+.... ..-.++++||+|++..|-. .|||.+|++.
T Consensus 131 ~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~~v~~GS~N~t~~s~~-----------~N~E~~~vi~ 190 (220)
T 4gel_A 131 TTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWTALGLG-----------GNWENCIITA 190 (220)
T ss_dssp SSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCCEEEEESCCBSHHHHH-----------TSBEEEEEEC
T ss_pred ccccccceeEEEcchhcccccccccceeccccccceEEecCccccccccc-----------cCceEEEEEE
Confidence 345678888663210 1235899999999988753 5899999873
No 10
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=61.05 E-value=4.7 Score=36.16 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCccccc-cccceEEeec
Q 014528 38 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 80 (423)
Q Consensus 38 ~fG~hHSKmmll~y~d~lRVVI~SANL~~~DW~-~~tQ~vW~qd 80 (423)
+.|.+|.|++|. |+-.++|.|+|++..-.. +.+.++.+.|
T Consensus 119 ~~~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~~ 159 (196)
T 4ggj_A 119 DLGYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIMED 159 (196)
T ss_dssp SSSCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEECC
T ss_pred ccccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEEC
Confidence 468899999998 787899999999876543 3455665543
No 11
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=55.75 E-value=13 Score=35.32 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=44.3
Q ss_pred CchhhhhhhhccCCCcEEEEcCCCCCCCCccccceeeeeeCCceEEEEeCCCCCccccccccceEEee
Q 014528 12 TWWTLIGCCQRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQ 79 (423)
Q Consensus 12 ~~~~~~~~~~~~~~~n~~~~~p~mp~~fG~hHSKmmll~y~d~lRVVI~SANL~~~DW~~~tQ~vW~q 79 (423)
.+.|+++++-..... +.++ ..--.+|+|..+.+-.++.-+||.|+|||..- +.|-|=++
T Consensus 80 TSKQavEElL~cGve-v~Ii-----NrkRi~HaK~Yg~~~n~g~~LIV~SgNfT~pG---msQNvE~s 138 (358)
T 2c1l_A 80 SSRQVVEELLNRGVE-VHII-----NRKRILHAKLYGTSNNLGESLVVSSGNFTGPG---MSQNIEAS 138 (358)
T ss_dssp BBHHHHHHHHHTTCE-EEEE-----ECSSCBCCEEEEEEETTEEEEEEESCCBSTTT---TTTSBEEE
T ss_pred cHHHHHHHHHhcCCc-eEEe-----eeeeecchhhhcccCCCceEEEEecCCccccc---cccceeEE
Confidence 456778777665543 5555 35678999999999999999999999999875 45544444
No 12
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=52.33 E-value=10 Score=39.00 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.1
Q ss_pred CCccccceeeeeeCCceEEEEeCCCCCccccccccceEEeec
Q 014528 39 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 80 (423)
Q Consensus 39 fG~hHSKmmll~y~d~lRVVI~SANL~~~DW~~~tQ~vW~qd 80 (423)
-+..|+|+||. |+-.++|.|+||...-+. +-++.+.+
T Consensus 436 ~~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~~ 472 (506)
T 1v0w_A 436 PYAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVES 472 (506)
T ss_dssp CCCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEEC
T ss_pred cccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEecC
Confidence 35899999998 777899999999887774 56777665
No 13
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=42.05 E-value=22 Score=38.36 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCCcceeeeeec--CCce-eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 014528 269 AMPHIKTFARYN--GQKL-AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321 (423)
Q Consensus 269 ~~PH~K~y~r~~--~~~~-~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~~ 321 (423)
.-.|.|+.+-.. ++.+ .|+++||+|+....++ .|.|+||++.
T Consensus 431 ~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~-----------~n~D~~l~i~ 475 (687)
T 1xdp_A 431 LKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR-----------LYTDYSLLTA 475 (687)
T ss_dssp CEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGG-----------TEEEEEEEEC
T ss_pred ccccceEEEEEeccCCeEEEEEEEeCCcCCcchhh-----------hcceEEEEEe
Confidence 337999987553 3455 8999999999876543 3689999885
No 14
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=39.04 E-value=16 Score=37.40 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCcccccc-ccceEEeec
Q 014528 38 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN-KSQGLWMQD 80 (423)
Q Consensus 38 ~fG~hHSKmmll~y~d~lRVVI~SANL~~~DW~~-~tQ~vW~qd 80 (423)
.-|.+|+|.|++ |+-.++|.|+||.+.-+.. .+.++.+.|
T Consensus 359 ~~~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~~ 399 (458)
T 3hsi_A 359 GDNTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIYD 399 (458)
T ss_dssp TTBEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEEC
T ss_pred CCCceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEeC
Confidence 358999999998 6678999999999876654 467777765
No 15
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=37.35 E-value=23 Score=38.26 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=56.4
Q ss_pred cCeEEEecCCCCCchHHHHHHHHhccCCCCCCCCCCCCCCCeEEccChhhhhcCcccCcCCccccCCCccchhHHHHHHH
Q 014528 177 SPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYW 256 (423)
Q Consensus 177 ~~i~~Q~SSiGsl~~~wl~~~~~sl~~~~~~~~~~~~~~~~~iifPT~~~V~~S~~G~~~gg~i~~~~~~~~~~~l~~~~ 256 (423)
..|.+++-++ .++..+..++.+...|. +++||-+..- +-..| +|....+. ..
T Consensus 530 ~~I~i~~~~l--pD~~ii~AL~~Aa~rGV----------~VrLivrg~c---~l~pg------vp~~sdni---~V---- 581 (687)
T 1xdp_A 530 SGITLKLNNL--VDKGLVDRLYAASSSGV----------PVNLLVRGMC---SLIPN------LEGISDNI---RA---- 581 (687)
T ss_dssp CCEEEEESCB--CCHHHHHHHHHHHHTTC----------CEEEEESSCB---CBCTT------CTTTSTTE---EE----
T ss_pred CEEEEEeCCC--CCHHHHHHHHHHHHCCC----------EEEEEEeccc---ccCCC------CCCCCCCE---EE----
Confidence 3677777664 45778888988877664 3677765210 00001 11000000 00
Q ss_pred hhhcCCCCCCCCCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 014528 257 AKWKASHTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321 (423)
Q Consensus 257 ~kw~~~~~~R~~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~~ 321 (423)
.+--++.+-|.|+|.-.+++ -.|+|+||||+..-.- -+|+|+++.+.
T Consensus 582 ------~s~~~r~Leh~rI~~f~~~d-d~~~~IGSAN~d~Rsl-----------~~n~Ev~~~I~ 628 (687)
T 1xdp_A 582 ------ISIVDRYLEHDRVYIFENGG-DKKVYLSSADWMTRNI-----------DYRIEVATPLL 628 (687)
T ss_dssp ------EEECSSSEECCCEEEECGGG-SCEEEEESCCBSHHHH-----------HSEEEEEEECC
T ss_pred ------EEehhHHhhCCeEEEEcCCC-CCEEEEEcCccchhhh-----------hhheeeeEEec
Confidence 00113456688997754442 3599999999975432 27999999874
No 16
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=27.58 E-value=50 Score=31.44 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=38.1
Q ss_pred hHHHHHHHhhhcCC-CCCCCCCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 014528 249 KDFLKKYWAKWKAS-HTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 320 (423)
Q Consensus 249 ~~~l~~~~~kw~~~-~~~R~~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~ 320 (423)
++-+.+.+. |..+ +.--+..+.|-|+|.-.+++.. =+++||.||+-. | +..|-||.|++
T Consensus 82 KQavEElL~-cGvev~IiNrkRi~HaK~Yg~~~n~g~-~LIV~SgNfT~p--G---------msQNvE~slll 141 (358)
T 2c1l_A 82 RQVVEELLN-RGVEVHIINRKRILHAKLYGTSNNLGE-SLVVSSGNFTGP--G---------MSQNIEASLLL 141 (358)
T ss_dssp HHHHHHHHH-TTCEEEEEECSSCBCCEEEEEEETTEE-EEEEESCCBSTT--T---------TTTSBEEEEEE
T ss_pred HHHHHHHHh-cCCceEEeeeeeecchhhhcccCCCce-EEEEecCCcccc--c---------cccceeEEEEE
Confidence 445555554 4332 1111346789999997776554 388999999643 1 34788999887
No 17
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=24.73 E-value=47 Score=33.97 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=26.5
Q ss_pred CCCcceeeeeecCCceeEEEEeccccchhhhhccc
Q 014528 269 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQ 303 (423)
Q Consensus 269 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~ 303 (423)
...|+|+++-.-.+.+ -+.+.||||...-||...
T Consensus 116 GthHsKmmiL~y~~gl-RVVI~TANL~~~DW~~~t 149 (464)
T 1jy1_A 116 GTHHTKMMLLLYEEGL-RVVIHTSNLIHADWHQKT 149 (464)
T ss_dssp CCBCCCEEEEEESSCE-EEEEECCCBSGGGGTSSB
T ss_pred cccchhhheeecCCce-EEEEeCCCCChhHhcccc
Confidence 3679999765544444 599999999999999854
No 18
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=21.97 E-value=36 Score=36.82 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 014528 268 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 321 (423)
Q Consensus 268 ~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~irnyElGVl~~ 321 (423)
+.+-|.|+|.-.+++. .|+|+||||+..-. .-+|+|+++.+.
T Consensus 593 r~Leh~RIy~f~~gd~-~~~~IGSAn~m~Rn-----------l~~r~Ev~~~i~ 634 (705)
T 2o8r_A 593 MYLEHSRIWCFHNGGK-EEVFISSADWMKRN-----------LYNRIETACPVL 634 (705)
T ss_dssp SSEECCCEEEECGGGS-CEEEEESCCBCHHH-----------HHTSBCEEEECC
T ss_pred HHHhcCEEEEEECCCC-cEEEEeccccchhh-----------hhheeEEEEEEc
Confidence 5677999987655433 59999999996532 237899998774
Done!