BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014529
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 177/361 (49%), Gaps = 30/361 (8%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 28 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 87
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 88 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 146
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 147 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 198
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +G +Y +G ++ +
Sbjct: 199 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
P + L S ++ G HT LTS G+LY WG N+ G +G+G+ SP +V+ P
Sbjct: 256 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 314
Query: 339 SESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTI 397
+ V QVSCGW+HT A++E + WG G + GQLG G VD P I
Sbjct: 315 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESVDRNFPKI 362
Query: 398 V 398
+
Sbjct: 363 I 363
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 176/351 (50%), Gaps = 30/351 (8%)
Query: 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK-KEVVQISTGYHH 134
++ G +H++ L V + G + GQLG + P ++S L ++V ++ G H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP-SPTQLSALDGHQIVSVTCGADH 67
Query: 135 SSAITVDG-ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT 193
+ A + G E+Y WG G+LG G + P+P K L GI KQ A G +AVT
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHGIRIKQIACGDSHCLAVT 125
Query: 194 GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI 253
G+V SWG +G+LG G L P+ I+ EG+++K+ AAG H+A +
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSL---------VPQKIQAFEGIRIKMVAAGAEHTAAV 176
Query: 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL--PYSEEVVCGGYHTCVLTSGGELYT 311
E+G +Y +G + + P ++ V CG HT ++ G LYT
Sbjct: 177 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 236
Query: 312 WGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEGKILTWGWGGSH 370
+G ++ G LG G ++ P +++ S S + Q+S GW+HT A+ S+GK+ WGW
Sbjct: 237 YGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGW---- 291
Query: 371 GTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 421
+ GQ+G GN++D P V F ++ K +QVSCG+ HT A+ E
Sbjct: 292 --------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 334
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 177/361 (49%), Gaps = 30/361 (8%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 28 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 87
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 88 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 146
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 147 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 198
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +G +Y +G ++ +
Sbjct: 199 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
P + L S ++ G HT LTS G+LY WG N+ G +G+G+ SP +V+ P
Sbjct: 256 PHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 314
Query: 339 SESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTI 397
+ V QVSCGW+HT A++E + WG G + GQLG G VD P I
Sbjct: 315 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESVDRNFPKI 362
Query: 398 V 398
+
Sbjct: 363 I 363
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 176/351 (50%), Gaps = 30/351 (8%)
Query: 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK-KEVVQISTGYHH 134
++ G +H++ L V + G + GQLG + P ++S L ++V ++ G H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP-SPTQLSALDGHQIVSVTCGADH 67
Query: 135 SSAITVDG-ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT 193
+ A + G E+Y WG G+LG G + P+P K L GI KQ A G +AVT
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHGIRIKQIACGDSHCLAVT 125
Query: 194 GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI 253
G+V SWG +G+LG G L P+ I+ EG+++K+ AAG H+A +
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSL---------VPQKIQAFEGIRIKMVAAGAEHTAAV 176
Query: 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL--PYSEEVVCGGYHTCVLTSGGELYT 311
E+G +Y +G + + P ++ V CG HT ++ G LYT
Sbjct: 177 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 236
Query: 312 WGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEGKILTWGWGGSH 370
+G ++ G LG G ++ P +++ S S + Q+S G++HT A+ S+GK+ WGW
Sbjct: 237 YGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGFRHTMALTSDGKLYGWGW---- 291
Query: 371 GTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 421
+ GQ+G GN++D P V F ++ K +QVSCG+ HT A+ E
Sbjct: 292 --------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 334
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 177/361 (49%), Gaps = 30/361 (8%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 40 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T++GE+ WG+N NGQLGLG
Sbjct: 100 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 159 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 210
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K+ + A G+ H+ + +G +Y +G ++ +
Sbjct: 211 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
P + L S ++ G HT LTS G+LY WG N+ G +G+G+ SP +V+ P
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 326
Query: 339 SESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTI 397
+ V QVSCGW+HT A++E + WG G + GQLG G VD P I
Sbjct: 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESVDRNFPKI 374
Query: 398 V 398
+
Sbjct: 375 I 375
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 176/351 (50%), Gaps = 30/351 (8%)
Query: 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK-KEVVQISTGYHH 134
++ G +H++ L V + G + GQLG + P ++S L ++V ++ G H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP-SPTQLSALDGHQIVSVTCGADH 79
Query: 135 SSAITVDG-ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT 193
+ A + G E+Y WG G+LG G + P+P K L GI KQ A G +AVT
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHGIRIKQIACGDSHCLAVT 137
Query: 194 GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI 253
G+V SWG +G+LG G L P+ I+ EG+++K+ AAG H+A +
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSL---------VPQKIQAFEGIRIKMVAAGAEHTAAV 188
Query: 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL--PYSEEVVCGGYHTCVLTSGGELYT 311
E+G +Y +G + + P ++ V CG HT ++ G LYT
Sbjct: 189 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 248
Query: 312 WGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEGKILTWGWGGSH 370
+G ++ G LG G ++ P +++ S S + Q+S GW+HT A+ S+GK+ WGW
Sbjct: 249 YGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGW---- 303
Query: 371 GTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 421
+ GQ+G GN++D P V F ++ K +QVSCG+ HT A+ E
Sbjct: 304 --------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 346
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 174/361 (48%), Gaps = 30/361 (8%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
WG G+ G+LG G E R P SA + H + ++ CG HT+ +++G VY+ G DFG
Sbjct: 30 WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFG 89
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
+LG N PL I L + QI+ G H A+T +GE+ WG+N NGQLGLG
Sbjct: 90 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDT 148
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
+ +P K++ GI K A G E + AVT G + WG G G LG G
Sbjct: 149 EDSL--VPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 200
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
T P + G K A G+ H+ + +G +Y +G ++ +
Sbjct: 201 ---TDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 257
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
P + L S ++ G HT LTS G+LY WG N+ G +G+G+ SP +V+ P
Sbjct: 258 PHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 316
Query: 339 SESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTI 397
+ V QVSCGW+HT A++E + WG G + GQLG G VD P I
Sbjct: 317 DDQKVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESVDRNFPKI 364
Query: 398 V 398
+
Sbjct: 365 I 365
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 174/351 (49%), Gaps = 30/351 (8%)
Query: 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK-KEVVQISTGYHH 134
++ G +H++ L V + G + GQLG + P ++S L ++V ++ G H
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP-SPTQLSALDGHQIVSVTCGADH 69
Query: 135 SSAITVDG-ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT 193
+ A + G E+Y WG G+LG G + P+P K L GI KQ A G +AVT
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHGIRIKQIACGDSHCLAVT 127
Query: 194 GGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI 253
G+V SWG +G+LG G L P+ I+ EG+++K AAG H+A +
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSL---------VPQKIQAFEGIRIKXVAAGAEHTAAV 178
Query: 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL--PYSEEVVCGGYHTCVLTSGGELYT 311
E+G +Y +G + + P ++ V CG HT ++ G LYT
Sbjct: 179 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYT 238
Query: 312 WGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEGKILTWGWGGSH 370
+G ++ G LG G ++ P +++ S S + Q+S G +HT A+ S+GK+ WGW
Sbjct: 239 YGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGARHTXALTSDGKLYGWGW---- 293
Query: 371 GTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 421
+ GQ+G GN++D P V F ++ K +QVSCG+ HT A+ E
Sbjct: 294 --------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 336
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 175/385 (45%), Gaps = 39/385 (10%)
Query: 43 WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALA-CGGAHTLF-LTETGCVYATGLNDF 100
WG+ G+LG P C A +L+ + GG TLF +T G +YATG
Sbjct: 25 WGHNHRGQLGGIEGAKVKVPTPCEALA--TLRPVQLIGGEQTLFAVTADGKLYATGYGAG 82
Query: 101 GQLGISENIGYS----LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLG 156
G+LGI S LE ++ +KK V +++G H A++ +GE+Y WG+ +G+LG
Sbjct: 83 GRLGIGGTESVSTPTLLESIQHVFIKK--VAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140
Query: 157 LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESS 216
G ++ P +E L GI A G S VT G + +WG G GRLGH
Sbjct: 141 HGNRSP--CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSD--- 195
Query: 217 ILGFLRSTSEYTPRLIKELEGVKVKIAA--AGFLHSACIDENGRVYIFGDRAVDKMLFQE 274
S + P+L++ L+G +V A +G + C+ ++ V+ +GD K+
Sbjct: 196 ------SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 249
Query: 275 GNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPE 332
+ + P I L +V CG + LT G +YTWG + LG GS D + P
Sbjct: 250 SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPR 309
Query: 333 RVQGPFSESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVD 391
+VQG V ++ G H +E G++ TW G + GQLG G
Sbjct: 310 QVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTW------------GDNDEGQLGDGTTNA 356
Query: 392 YIHPTIVNFGENVKALQVSCGFNHT 416
P +V + K +V+CG HT
Sbjct: 357 IQRPRLVAALQGKKVNRVACGSAHT 381
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 139/311 (44%), Gaps = 20/311 (6%)
Query: 57 ESRWRPVVCSAFEKHSLKALAC--GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLE 114
ES P + + + +K +A GG H L L+ G VY+ G + G+LG N
Sbjct: 91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDR 149
Query: 115 PLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC 173
P I L+ EVV ++ G HS+ +T G+LY WGK G+LG ++ P VE
Sbjct: 150 PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP--KLVEA 207
Query: 174 LSG--IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL 231
L G + G Q++ +T V SWG G G+LG G S P
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG---------SDGCKVPMK 258
Query: 232 IKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSE 291
I L G+ V G S + ++G VY +G ++ +H RRP + L +
Sbjct: 259 IDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318
Query: 292 --EVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCG 349
+ G H T GE+YTWG N+ G LG G+ + + P R+ V++V+CG
Sbjct: 319 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRP-RLVAALQGKKVNRVACG 377
Query: 350 WKHTAAISEGK 360
HT A S K
Sbjct: 378 SAHTLAWSTSK 388
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 126/287 (43%), Gaps = 31/287 (10%)
Query: 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201
G +Y WG N GQLG G + AKV +PT E L+ + Q G + AVT GK+ +
Sbjct: 20 GTIYGWGHNHRGQLG-GIEGAKV-KVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYAT 77
Query: 202 GAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA--AGFLHSACIDENGRV 259
G G GRLG G S+ TP L++ ++ V +K A +G H + G V
Sbjct: 78 GYGAGGRLGIGGTESV---------STPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEV 128
Query: 260 YIFGDRAVDKMLFQEGNHARRPSLISKLPYSE--EVVCGGYHTCVLTSGGELYTWGSNEN 317
Y +G+ K+ + RP +I L E +V GG H+ +T+ G+LYTWG
Sbjct: 129 YSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRY 188
Query: 318 GCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI---SEGKILTWGWGGSHGTFS 374
G LG + P+ V+ VD ++CG + + + +WG G
Sbjct: 189 GRLGHSDSEDQLKPKLVEALQGHRVVD-IACGSGDAQTLCLTDDDTVWSWGDGDY----- 242
Query: 375 EDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 421
G+LG G P ++ + ++V CG + AL +
Sbjct: 243 -------GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTK 282
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 2 LGRSLTAMTKYYLKQDIKLGSKLGI----CKRWISSTLQRRFAA-LWGNGDYGRLGLGSL 56
LGR + K +K D G LG+ C S L + A WG GDY RLG GS
Sbjct: 245 LGRGGSDGCKVPMKIDSLTG--LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ RP + + A+A G H + TE G VY G ND GQLG P
Sbjct: 303 DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQ-RPR 361
Query: 117 RISGLK-KEVVQISTGYHHSSA 137
++ L+ K+V +++ G H+ A
Sbjct: 362 LVAALQGKKVNRVACGSAHTLA 383
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 186/406 (45%), Gaps = 58/406 (14%)
Query: 44 GNGDYGRLGLG-SLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G GD G+LGLG ++ R +P + S E + GG HT+ L+++G VY+ G ND G
Sbjct: 33 GQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 90
Query: 103 LGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQLGLGK 159
LG ++ G + P ++ L+++VVQ+S G H++A+T DG +++WG +++NG +GL +
Sbjct: 91 LGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE 149
Query: 160 KAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219
K + +P +V+ + + A G + V +T G + + G G G+LG E L
Sbjct: 150 PMKKSM-VPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---LF 203
Query: 220 FLRSTSEYTPRLI---------KELEG-VKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269
R + RL+ + G V+ + A G + I G VY FG +
Sbjct: 204 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 263
Query: 270 MLFQEGNHARRPSLISKLPYSEE----VVCGGYHTCVLTSGGELYTWGSNENGCLGIG-- 323
+ P ++ S + G +HT + S G+ Y+ G E G LG+G
Sbjct: 264 LGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG 323
Query: 324 ----SIDVLHSPERVQGPFSESP-VDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDG 377
SI L S P V V+CG A++ +G++ WG G ++
Sbjct: 324 AEEKSIPTL---------ISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNY------- 367
Query: 378 HSSGGQLGHGNDVDYIHPTIV--NFGENVKALQVSCGFNHTGALLE 421
QLG G D D P + EN L VS G HT L++
Sbjct: 368 -----QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 128/313 (40%), Gaps = 47/313 (15%)
Query: 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
+H TE G V G D GQLG+ EN+ +P +S + ++VVQ G H+ ++
Sbjct: 18 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS-IPEDVVQAEAGGMHTVCLSK 76
Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200
G++Y +G N G LG +P KVE + Q + G + A+T G+V
Sbjct: 77 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV--QVSAGDSHTAALTDDGRVFL 134
Query: 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVY 260
W GS R +G ++G L + + +L+ VK+ A+G H + +G +Y
Sbjct: 135 W---GSFRDNNG----VIGLLEPMKKSMVPVQVQLDVPVVKV-ASGNDHLVMLTADGDLY 186
Query: 261 IFGDRAVDKMLFQEGNHARRPSLISK-----------LPYS--------------EEVVC 295
G ++G R P L + +P ++ C
Sbjct: 187 TLG-------CGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239
Query: 296 GGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQV--SCGWKHT 353
G Y T ++ G +Y +G + LG + P+ + F S V S G HT
Sbjct: 240 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS-FKNSTKSWVGFSGGQHHT 298
Query: 354 AAI-SEGKILTWG 365
+ SEGK + G
Sbjct: 299 VCMDSEGKAYSLG 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 239 KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV---C 295
KVK++ H + E G V G V ++ E R+ + +P E+VV
Sbjct: 14 KVKVS-----HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEA 66
Query: 296 GGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFS-ESPVDQVSCGWKHTA 354
GG HT L+ G++Y++G N+ G LG + + E V G + V QVS G HTA
Sbjct: 67 GGMHTVCLSKSGQVYSFGCNDEGALGRDT--SVEGSEMVPGKVELQEKVVQVSAGDSHTA 124
Query: 355 AIS-EGKILTWG 365
A++ +G++ WG
Sbjct: 125 ALTDDGRVFLWG 136
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 185/402 (46%), Gaps = 50/402 (12%)
Query: 44 GNGDYGRLGLG-SLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102
G GD G+LGLG ++ R +P + S E + GG HT+ L+++G VY+ G ND G
Sbjct: 22 GQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 79
Query: 103 LGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQLGLGK 159
LG ++ G + P ++ L+++VVQ+S G H++A+T DG +++WG +++NG +GL +
Sbjct: 80 LGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE 138
Query: 160 KAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219
K + +P +V+ + + A G + V +T G + + G G G+LG E L
Sbjct: 139 PMKKSM-VPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---LF 192
Query: 220 FLRSTSEYTPRLI---------KELEG-VKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269
R + RL+ + G V+ + A G + I G VY FG +
Sbjct: 193 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 252
Query: 270 MLFQEGNHARRPSLISKLPYSEE----VVCGGYHTCVLTSGGELYTWGSNENGCLGIGSI 325
+ P ++ S + G +HT + S G+ Y+ G E G LG+G
Sbjct: 253 LGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG-- 310
Query: 326 DVLHSPERVQGP--FSESP-VDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSG 381
E P S P V V+CG A++ +G++ WG G ++
Sbjct: 311 ---EGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNY----------- 356
Query: 382 GQLGHGNDVDYIHPTIV--NFGENVKALQVSCGFNHTGALLE 421
QLG G D D P + EN L VS G HT L++
Sbjct: 357 -QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 397
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 128/313 (40%), Gaps = 47/313 (15%)
Query: 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
+H TE G V G D GQLG+ EN+ +P +S + ++VVQ G H+ ++
Sbjct: 7 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS-IPEDVVQAEAGGMHTVCLSK 65
Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200
G++Y +G N G LG +P KVE + Q + G + A+T G+V
Sbjct: 66 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV--QVSAGDSHTAALTDDGRVFL 123
Query: 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVY 260
W GS R +G ++G L + + +L+ VK+ A+G H + +G +Y
Sbjct: 124 W---GSFRDNNG----VIGLLEPMKKSMVPVQVQLDVPVVKV-ASGNDHLVMLTADGDLY 175
Query: 261 IFGDRAVDKMLFQEGNHARRPSLISK-----------LPYS--------------EEVVC 295
G ++G R P L + +P ++ C
Sbjct: 176 TLG-------CGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 228
Query: 296 GGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQV--SCGWKHT 353
G Y T ++ G +Y +G + LG + P+ + F S V S G HT
Sbjct: 229 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS-FKNSTKSWVGFSGGQHHT 287
Query: 354 AAI-SEGKILTWG 365
+ SEGK + G
Sbjct: 288 VCMDSEGKAYSLG 300
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 239 KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV---C 295
KVK++ H + E G V G V ++ E R+ + +P E+VV
Sbjct: 3 KVKVS-----HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEA 55
Query: 296 GGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFS-ESPVDQVSCGWKHTA 354
GG HT L+ G++Y++G N+ G LG + + E V G + V QVS G HTA
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALGRDT--SVEGSEMVPGKVELQEKVVQVSAGDSHTA 113
Query: 355 AIS-EGKILTWG 365
A++ +G++ WG
Sbjct: 114 ALTDDGRVFLWG 125
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 167/375 (44%), Gaps = 47/375 (12%)
Query: 42 LWGNGDYGRLGLGS--LE-SRWRPV--VCSAFEKHSLKALACGGAHTLFLTETGCVYATG 96
+ GNGD G+LGLG LE R PV + A + ++ GG H L LT++G +Y+ G
Sbjct: 47 VCGNGDVGQLGLGEDILERKRLSPVAGIPDAVD------ISAGGMHNLVLTKSGDIYSFG 100
Query: 97 LNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG--KNSNGQ 154
ND G LG + S + L + + IS G HS+ + DG ++ WG ++S+G
Sbjct: 101 CNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGN 160
Query: 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQE 214
+GL K PI + + G A G + V +T GKV + G G+LG E
Sbjct: 161 MGLTIDGNKRTPI----DLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSE 216
Query: 215 SSILG--------FLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRA 266
SI G LR T R K E I A + + ++ G
Sbjct: 217 RSISGEGRRGKRDLLRPTQLIITR-AKPFEA----IWATNYCTFMRESQTQVIWATGLNN 271
Query: 267 VDKMLFQ-EGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSI 325
++ + +G + ++L + G +HT +LT+ + G E G LG+G +
Sbjct: 272 FKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV 331
Query: 326 -DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQ 383
DV+ P V+ +E V V CG + A++ +GK+ +WG G ++ Q
Sbjct: 332 KDVVEKPTIVK-KLTEKIV-SVGCGEVCSYAVTIDGKLYSWGSGVNN------------Q 377
Query: 384 LGHGNDVDYIHPTIV 398
LG G+ D + P +V
Sbjct: 378 LGVGDGDDELEPIVV 392
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 139 TVDGELYMWGKNSNGQLGLG------KKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192
TV G + + G GQLGLG K+ + V IP V+ +G ++ +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGM---------HNLVL 90
Query: 193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252
T G + S+G G LG +++S G SE P LI +L G K +AG HSAC
Sbjct: 91 TKSGDIYSFGCNDEGALG--RDTSEDG-----SESKPDLI-DLPG-KALCISAGDSHSAC 141
Query: 253 IDENGRVYIFG---DRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGEL 309
+ E+GRV+ +G D + L +GN R P + + + G H +LT+ G++
Sbjct: 142 LLEDGRVFAWGSFRDSHGNMGLTIDGNK-RTPIDLMEGTVCCSIASGADHLVILTTAGKV 200
Query: 310 YTWGSNENGCLG 321
+T G E G LG
Sbjct: 201 FTVGCAEQGQLG 212
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 87 TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQISTGYHHSSAITVDGEL 144
T G V G D GQLG+ E+I LE R+S + + V IS G H+ +T G++
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDI---LERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 145 YMWGKNSNGQLGL------GKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198
Y +G N G LG + +I +P K C+S G S + G+V
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--------GDSHSACLLEDGRV 148
Query: 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGR 258
+W GS R HG +G ++ TP I +EG A+G H + G+
Sbjct: 149 FAW---GSFRDSHGN----MGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGK 199
Query: 259 VYIFG 263
V+ G
Sbjct: 200 VFTVG 204
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 257 GRVYIFGDRAVDKM-LFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315
G V + G+ V ++ L ++ +R S ++ +P + ++ GG H VLT G++Y++G N
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCN 102
Query: 316 ENGCLGIGSID--VLHSPERVQGPFSESPVDQVSCGWKHTAAISE-GKILTWG-WGGSHG 371
+ G LG + + P+ + P +S G H+A + E G++ WG + SHG
Sbjct: 103 DEGALGRDTSEDGSESKPDLIDLP---GKALCISAGDSHSACLLEDGRVFAWGSFRDSHG 159
Query: 372 TF 373
Sbjct: 160 NM 161
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 43 WGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFG 101
WGNG +LG +E R + + F +K +A G H LT+ + + GLN FG
Sbjct: 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFG 287
Query: 102 QLGISENI---GYSLEPLRISGLKKEVVQ-ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157
Q G+SE++ +P R++ V++ I+ G HHS ++ DG+LY G+ ++G+
Sbjct: 288 QCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGI 347
Query: 158 GKK------------AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG 205
K A+ +P+PTK+ + K A G SVAV G SWG G
Sbjct: 348 PKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF--KSVAAGSHHSVAVAQNGIAYSWGFGE 405
Query: 206 SGRLGHG 212
+ +G G
Sbjct: 406 TYAVGLG 412
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 163/394 (41%), Gaps = 70/394 (17%)
Query: 43 WGNGDYGRLGLGSLESRW---RPVVCSAFEKHSLK--ALACGGAHTLFLTETGCVYATGL 97
WG G LGLG L RP + + K + A GG HTL L E V++ G
Sbjct: 34 WGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93
Query: 98 NDFGQLG-ISENIGYSLE---------------------PLRISGLK-------KEVVQI 128
ND G LG + N L+ P +I +VVQ+
Sbjct: 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQL 153
Query: 129 STGYHHSSAITVDGELYMWG--KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF 186
+ + S A+ +GE+Y WG + + G LG + K+ P KV S Q A G
Sbjct: 154 AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK 213
Query: 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG 246
+ + + G V +WG G +LG + F T + P ++ VK A+G
Sbjct: 214 DHILFLDEEGMVFAWGNGQQNQLGR---KVMERFRLKTLDPRPFGLRH-----VKYIASG 265
Query: 247 FLHSACIDENGRVY-----IFGDRAVDKMLFQEGNHARRPSLISKLPYS---EEVVCGGY 298
H + ++ ++ FG V + + ++G +P ++ LP + + G +
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDV-EDGALVTKPKRLA-LPDNVVIRSIAAGEH 323
Query: 299 HTCVLTSGGELYTWGSNENGCLGIGSIDVL-HSPERVQGPFSESPV----------DQVS 347
H+ +L+ G+LY+ G + +GI ++ ++ + V G P+ V+
Sbjct: 324 HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVA 383
Query: 348 CGWKHTAAISEGKI-LTWGWGGSH----GTFSED 376
G H+ A+++ I +WG+G ++ G F +D
Sbjct: 384 AGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 126/308 (40%), Gaps = 31/308 (10%)
Query: 53 LGSLESRWRPVVCSAF----EKHSLKALACGGAHTLFLTETGCVYATGLN--DFGQLGIS 106
L LES + +F E H + LA + L G VYA G + G LG
Sbjct: 126 LNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFY 185
Query: 107 EN-IGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKV 164
++ I P ++ K +VQ++ G H + +G ++ WG QLG +K +
Sbjct: 186 QDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG--RKVMER 243
Query: 165 IPIPTKVECLSGI-FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223
+ T G+ K A G A+T K++SWG G+ G ++ +
Sbjct: 244 FRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK 303
Query: 224 TSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN------- 276
P+ + + V ++ AAG HS + ++G +Y G + ++ + N
Sbjct: 304 -----PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYK 358
Query: 277 ----HARR---PSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSI-DVL 328
AR P+ ++ +P + V G +H+ + G Y+WG E +G+G D
Sbjct: 359 DVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDT 418
Query: 329 HSPERVQG 336
P R++
Sbjct: 419 EVPTRIKN 426
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 121/330 (36%), Gaps = 54/330 (16%)
Query: 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGK-------KAAKVIPIPTKVECLSGI 177
++ Y H +++ WG S +LGLG K ++ P + E
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESS------------------ILG 219
F A+G ++A+ V SWG G LG ++ L
Sbjct: 72 F----AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 220 FLRSTSEYTPR--LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGD-RAVDKMLFQEGN 276
L ST PR EG KV AA S + NG VY +G R + +L +
Sbjct: 128 ELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187
Query: 277 HARRPSLISKLP-YSE----EVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSP 331
+ K+P +S+ ++ G H L G ++ WG+ + LG ++
Sbjct: 188 KIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK 247
Query: 332 ERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDV 390
PF V ++ G H A++ + K+++WG + GQ G DV
Sbjct: 248 TLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGL------------NQFGQCGVSEDV 295
Query: 391 D----YIHPTIVNFGENVKALQVSCGFNHT 416
+ P + +NV ++ G +H+
Sbjct: 296 EDGALVTKPKRLALPDNVVIRSIAAGEHHS 325
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 62/241 (25%)
Query: 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184
V I+ GY H A+ G++ WG N NGQL +P T+ SG+ A
Sbjct: 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQ----SGV--DAIAA 70
Query: 185 GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA 244
G S+A+ G +V++WG G ++++ RS V A
Sbjct: 71 GNYHSLALKDG-EVIAWGGNEDG------QTTVPAEARS---------------GVDAIA 108
Query: 245 AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLT 304
AG S + ++G+V +GD + + A S ++ L GG +T +
Sbjct: 109 AGAWASYAL-KDGKVIAWGDDSDGQTTVP----AEAQSGVTALD-------GGVYTALAV 156
Query: 305 SGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTW 364
G + WG N G + P Q S VD V+ G H+ A+ +GK++ W
Sbjct: 157 KNGGVIAWGDNYFGQTTV--------PAEAQ-----SGVDDVAGGIFHSLALKDGKVIAW 203
Query: 365 G 365
G
Sbjct: 204 G 204
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 120/310 (38%), Gaps = 77/310 (24%)
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ W A + + A+A G H L L + G V G N GQL ++
Sbjct: 10 NNDWGEATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAA 60
Query: 117 RISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176
SG+ I+ G +HS A+ DGE+ WG N +GQ +P E SG
Sbjct: 61 TQSGVDA----IAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVP----AEARSG 103
Query: 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE 236
+ A G S A+ G KV++WG G+ T +
Sbjct: 104 V--DAIAAGAWASYALKDG-KVIAWGDDSDGQ-------------------TTVPAEAQS 141
Query: 237 GVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG 296
GV A G +++A +NG V +GD N+ + ++ ++ + V G
Sbjct: 142 GV---TALDGGVYTALAVKNGGVIAWGD-----------NYFGQTTVPAEAQSGVDDVAG 187
Query: 297 G-YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAA 355
G +H+ L G ++ WG N + + E + G V ++ G ++ A
Sbjct: 188 GIFHSLALKDG-KVIAWGDNRYKQTTVPT-------EALSG------VSAIASGEWYSLA 233
Query: 356 ISEGKILTWG 365
+ GK++ WG
Sbjct: 234 LKNGKVIAWG 243
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 62/241 (25%)
Query: 125 VVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184
V I+ GY H A+ G++ WG N NGQL +P T+ SG+ A
Sbjct: 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQ----SGV--DAIAA 72
Query: 185 GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA 244
G S+A+ G +V++WG G ++++ RS V A
Sbjct: 73 GNYHSLALKDG-EVIAWGGNEDG------QTTVPAEARS---------------GVDAIA 110
Query: 245 AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLT 304
AG S + ++G+V +GD + + A S ++ L GG +T +
Sbjct: 111 AGAWASYAL-KDGKVIAWGDDSDGQTTVP----AEAQSGVTALD-------GGVYTALAV 158
Query: 305 SGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTW 364
G + WG N G + P Q S VD V+ G H+ A+ +GK++ W
Sbjct: 159 KNGGVIAWGDNYFGQTTV--------PAEAQ-----SGVDDVAGGIFHSLALKDGKVIAW 205
Query: 365 G 365
G
Sbjct: 206 G 206
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 120/310 (38%), Gaps = 77/310 (24%)
Query: 57 ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL 116
+ W A + + A+A G H L L + G V G N GQL ++
Sbjct: 12 NNDWGEATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL--------TMPAA 62
Query: 117 RISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176
SG+ I+ G +HS A+ DGE+ WG N +GQ +P E SG
Sbjct: 63 TQSGVDA----IAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVP----AEARSG 105
Query: 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE 236
+ A G S A+ G KV++WG G+ T +
Sbjct: 106 V--DAIAAGAWASYALKDG-KVIAWGDDSDGQ-------------------TTVPAEAQS 143
Query: 237 GVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG 296
GV A G +++A +NG V +GD N+ + ++ ++ + V G
Sbjct: 144 GV---TALDGGVYTALAVKNGGVIAWGD-----------NYFGQTTVPAEAQSGVDDVAG 189
Query: 297 G-YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAA 355
G +H+ L G ++ WG N + + E + G V ++ G ++ A
Sbjct: 190 GIFHSLALKDG-KVIAWGDNRYKQTTVPT-------EALSG------VSAIASGEWYSLA 235
Query: 356 ISEGKILTWG 365
+ GK++ WG
Sbjct: 236 LKNGKVIAWG 245
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 342 PVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGH 378
P QV+ G++ +A +S+G++ T G GS G F ++G
Sbjct: 264 PDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNGE 300
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 366 WGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVN 399
W G SE+ G++ HGN +DY PTIV
Sbjct: 668 WMGMGQALSEETVYDNGRMVHGNILDYRVPTIVE 701
>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
Length = 400
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 132 YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVA 191
Y H + + DG++ +G N NGQ + A I Q A G +V
Sbjct: 318 YTHYTVMYGDGQIAFFGNNDNGQCDVDDHAGPYI---------------QLAAGHNFTVT 362
Query: 192 VTGGGKVLSWGAGGSGRL 209
V +V+ WG L
Sbjct: 363 VNTLNQVMFWGDSPDNSL 380
>pdb|1NRI|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase
Hi0754 From Haemophilus Influenzae
Length = 306
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 157 LGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSV-AVTGGGKVLSWGAGGSGRLG 210
L + K++P+ + CL Q +L EQ V A GG+++ GAG SGRLG
Sbjct: 38 LXNEEDKLVPLAIE-SCLP-----QISLAVEQIVQAFQQGGRLIYIGAGTSGRLG 86
>pdb|3PIG|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIG|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIJ|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
pdb|3PIJ|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
Length = 526
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 205 GSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG--RVYIF 262
G GH + +L + R + P L +E +GV F SA ID+NG R Y
Sbjct: 79 GPMHWGHVSSTDMLNWKREPIMFAPSLEQEKDGV--------FSGSAVIDDNGDLRFYYT 130
Query: 263 GDR 265
G R
Sbjct: 131 GHR 133
>pdb|3NQH|A Chain A, Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.11 A
Resolution
Length = 441
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 249 HSACI-DENGRVYIFGDRAVDK 269
H ACI +ENGR Y+FG+ DK
Sbjct: 25 HGACIVEENGRYYLFGEYKSDK 46
>pdb|1G5R|A Chain A, The Three-dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo
Form
Length = 196
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 32 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVXATGF 91
>pdb|1G5T|A Chain A, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo-Atp
Form
pdb|1G64|A Chain A, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium.
CobalaminATP TERNARY COMPLEX
pdb|1G64|B Chain B, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium.
CobalaminATP TERNARY COMPLEX
Length = 196
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 32 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF 91
>pdb|4HUT|A Chain A, Structure Of Atp:co(i)rrinoid Adenosyltransferase (coba)
From Salmonella Enterica In Complex With Four And
Five-coordinate Cob(ii) Alamin And Atp
pdb|4HUT|B Chain B, Structure Of Atp:co(i)rrinoid Adenosyltransferase (coba)
From Salmonella Enterica In Complex With Four And
Five-coordinate Cob(ii) Alamin And Atp
Length = 191
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 VAVTGGGKVLSWGAGGSGR--LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247
+ TG GK + A G+ +GHG+ ++ F++ T R + E GV+ ++ A GF
Sbjct: 27 IVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF 86
>pdb|3HA1|A Chain A, Alanine Racemase From Bacillus Anthracis (Ames)
pdb|3HA1|B Chain B, Alanine Racemase From Bacillus Anthracis (Ames)
Length = 397
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG---GSGRLGH 211
L LG + I + + + +F K+ ++++ + G + + G GR+G
Sbjct: 85 LVLGPSPPRDINVAAENDVALTVFQKEWV---DEAIKLWDGSSTMKYHINFDSGMGRIGI 141
Query: 212 GQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYI 261
+ + GFL+S E P L ELEGV A A + ++ D+ ++
Sbjct: 142 RERKELKGFLKSL-EGAPFL--ELEGVYTHFATADEVETSYFDKQYNTFL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,097,616
Number of Sequences: 62578
Number of extensions: 638601
Number of successful extensions: 1726
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 101
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)