Query 014529
Match_columns 423
No_of_seqs 222 out of 2347
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.5E-51 9.8E-56 376.2 29.5 360 35-420 65-463 (476)
2 KOG1427 Uncharacterized conser 100.0 9.2E-46 2E-50 320.0 21.7 367 35-422 17-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 7.5E-44 1.6E-48 328.6 26.4 330 17-357 104-463 (476)
4 KOG1427 Uncharacterized conser 100.0 3E-42 6.6E-47 298.2 18.2 315 24-357 65-397 (443)
5 KOG1428 Inhibitor of type V ad 100.0 1.9E-31 4.2E-36 266.8 22.0 375 9-420 469-893 (3738)
6 KOG0783 Uncharacterized conser 100.0 5.3E-28 1.1E-32 234.2 15.7 299 36-360 140-451 (1267)
7 KOG0783 Uncharacterized conser 99.9 1.9E-23 4.1E-28 202.9 17.2 269 14-307 174-450 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 1.7E-21 3.6E-26 196.4 20.1 319 17-355 525-891 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 9.3E-13 2E-17 88.2 4.0 50 358-419 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 8.4E-12 1.8E-16 83.5 4.8 50 37-86 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 1.6E-10 3.4E-15 67.2 4.1 30 179-208 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 2.1E-10 4.6E-15 66.6 4.2 30 290-319 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 98.9 1.8E-11 3.9E-16 121.4 -7.0 147 168-367 5-153 (850)
14 KOG0941 E3 ubiquitin protein l 98.8 6.6E-11 1.4E-15 117.4 -6.9 145 60-207 3-156 (850)
15 PF11725 AvrE: Pathogenicity f 96.3 0.25 5.3E-06 54.6 17.3 106 290-421 705-813 (1774)
16 PF11725 AvrE: Pathogenicity f 94.6 0.18 4E-06 55.6 9.3 113 232-359 697-815 (1774)
17 KOG0315 G-protein beta subunit 94.5 3.3 7.1E-05 36.8 17.2 61 247-316 136-198 (311)
18 KOG3669 Uncharacterized conser 94.0 3.9 8.4E-05 40.6 15.9 108 78-201 190-299 (705)
19 KOG3669 Uncharacterized conser 93.3 1.2 2.7E-05 43.9 11.4 105 245-363 190-298 (705)
20 KOG0646 WD40 repeat protein [G 92.8 8.7 0.00019 37.1 16.0 210 121-366 80-306 (476)
21 KOG0646 WD40 repeat protein [G 92.6 6.2 0.00013 38.1 14.7 148 27-201 92-244 (476)
22 KOG0943 Predicted ubiquitin-pr 92.3 0.023 5.1E-07 59.8 -1.6 131 70-205 373-506 (3015)
23 KOG0293 WD40 repeat-containing 91.1 5.2 0.00011 38.1 12.3 70 121-203 394-469 (519)
24 KOG0291 WD40-repeat-containing 90.2 25 0.00055 36.4 21.4 103 36-152 317-424 (893)
25 KOG0943 Predicted ubiquitin-pr 90.1 0.025 5.4E-07 59.6 -3.8 134 124-269 375-509 (3015)
26 PF07569 Hira: TUP1-like enhan 88.5 2.5 5.5E-05 37.4 8.1 78 289-366 14-94 (219)
27 cd00200 WD40 WD40 domain, foun 88.2 18 0.00038 32.0 28.2 98 29-150 22-123 (289)
28 KOG0296 Angio-associated migra 86.9 28 0.0006 32.8 26.3 113 18-154 66-182 (399)
29 TIGR01063 gyrA DNA gyrase, A s 85.5 57 0.0012 35.1 19.6 174 16-204 534-718 (800)
30 PF07569 Hira: TUP1-like enhan 82.8 7.4 0.00016 34.4 8.1 31 121-151 11-41 (219)
31 cd00200 WD40 WD40 domain, foun 81.5 37 0.00079 29.9 23.4 67 72-150 95-165 (289)
32 KOG1408 WD40 repeat protein [F 79.8 77 0.0017 32.9 14.4 101 77-202 139-247 (1080)
33 PHA02713 hypothetical protein; 77.0 49 0.0011 33.9 13.0 20 131-150 341-360 (557)
34 KOG4441 Proteins containing BT 73.4 40 0.00087 34.7 11.2 59 302-366 471-530 (571)
35 smart00706 TECPR Beta propelle 72.9 7.4 0.00016 22.9 3.6 24 123-146 8-32 (35)
36 smart00706 TECPR Beta propelle 70.9 8.6 0.00019 22.6 3.6 25 71-95 8-33 (35)
37 KOG0291 WD40-repeat-containing 70.8 1.4E+02 0.0031 31.2 27.6 104 250-366 312-421 (893)
38 PRK05560 DNA gyrase subunit A; 70.7 1.6E+02 0.0035 31.8 19.8 173 16-203 536-720 (805)
39 PRK13979 DNA topoisomerase IV 69.2 1.6E+02 0.0034 32.5 14.8 134 15-158 550-697 (957)
40 KOG1408 WD40 repeat protein [F 66.4 1.5E+02 0.0031 31.1 12.8 25 124-148 219-247 (1080)
41 PF12341 DUF3639: Protein of u 64.7 20 0.00044 19.9 3.8 26 176-201 1-26 (27)
42 KOG1900 Nuclear pore complex, 63.6 2.6E+02 0.0055 31.5 15.7 60 84-150 93-157 (1311)
43 KOG0315 G-protein beta subunit 63.5 1.1E+02 0.0025 27.5 18.8 99 28-150 95-197 (311)
44 TIGR03300 assembly_YfgL outer 63.2 1.2E+02 0.0026 29.1 11.9 55 248-312 321-376 (377)
45 TIGR01063 gyrA DNA gyrase, A s 62.2 2.3E+02 0.005 30.6 20.5 167 129-316 543-719 (800)
46 PHA02713 hypothetical protein; 61.7 2E+02 0.0043 29.6 14.8 20 185-204 341-360 (557)
47 KOG0649 WD40 repeat protein [G 55.8 88 0.0019 28.0 8.2 76 289-366 64-143 (325)
48 PRK05560 DNA gyrase subunit A; 55.7 3E+02 0.0065 29.8 21.0 213 128-366 544-771 (805)
49 PF06433 Me-amine-dh_H: Methyl 53.1 42 0.0009 31.7 6.3 174 181-366 32-212 (342)
50 PHA03098 kelch-like protein; P 52.5 2.7E+02 0.0058 28.3 16.2 15 137-151 338-352 (534)
51 KOG4441 Proteins containing BT 51.8 1.2E+02 0.0026 31.3 10.0 22 243-264 509-530 (571)
52 COG4257 Vgb Streptogramin lyas 51.5 1.8E+02 0.0039 26.8 9.6 139 79-262 62-205 (353)
53 COG4257 Vgb Streptogramin lyas 50.8 47 0.001 30.4 5.9 136 30-201 65-205 (353)
54 PRK13979 DNA topoisomerase IV 50.2 3.9E+02 0.0085 29.5 20.9 132 71-211 552-696 (957)
55 PRK14131 N-acetylneuraminic ac 48.3 2.6E+02 0.0056 26.9 17.6 18 187-204 131-148 (376)
56 KOG1240 Protein kinase contain 47.0 4E+02 0.0088 29.9 12.8 110 27-150 1060-1181(1431)
57 PLN02153 epithiospecifier prot 46.8 2.6E+02 0.0055 26.4 16.0 17 188-204 307-323 (341)
58 PF04762 IKI3: IKI3 family; I 44.3 4.8E+02 0.01 28.8 22.8 47 249-315 593-639 (928)
59 PF06739 SBBP: Beta-propeller 43.6 24 0.00053 21.3 2.2 18 81-98 15-32 (38)
60 KOG1034 Transcriptional repres 42.5 40 0.00087 31.4 4.3 66 24-97 315-382 (385)
61 TIGR03548 mutarot_permut cycli 40.3 3.1E+02 0.0068 25.5 12.0 18 133-150 163-180 (323)
62 PLN02153 epithiospecifier prot 39.6 3.3E+02 0.0072 25.6 23.7 17 187-204 130-146 (341)
63 KOG0293 WD40 repeat-containing 39.6 3.7E+02 0.008 26.2 16.1 26 239-264 442-469 (519)
64 PHA03098 kelch-like protein; P 39.3 4.2E+02 0.0092 26.8 17.2 14 137-150 385-398 (534)
65 KOG1900 Nuclear pore complex, 38.6 5.5E+02 0.012 29.1 12.5 33 289-321 244-278 (1311)
66 KOG0289 mRNA splicing factor [ 38.6 3.3E+02 0.0072 26.7 9.7 67 81-149 350-418 (506)
67 KOG1240 Protein kinase contain 37.4 6.6E+02 0.014 28.4 12.8 158 178-366 1050-1224(1431)
68 KOG0289 mRNA splicing factor [ 37.1 1.9E+02 0.0042 28.2 8.0 66 298-366 350-418 (506)
69 PHA02790 Kelch-like protein; P 37.0 4.4E+02 0.0096 26.4 12.2 14 137-150 314-327 (480)
70 PF07250 Glyoxal_oxid_N: Glyox 36.3 1.2E+02 0.0026 27.3 6.3 76 76-151 114-190 (243)
71 PF04841 Vps16_N: Vps16, N-ter 34.6 4.5E+02 0.0098 25.7 18.7 25 72-96 129-153 (410)
72 PLN03215 ascorbic acid mannose 32.8 1.8E+02 0.004 28.0 7.3 59 75-148 164-225 (373)
73 PF07646 Kelch_2: Kelch motif; 32.6 46 0.00099 21.1 2.4 16 351-366 4-19 (49)
74 COG5308 NUP170 Nuclear pore co 31.7 6.3E+02 0.014 27.6 11.1 106 84-205 96-202 (1263)
75 PF03785 Peptidase_C25_C: Pept 31.6 1.2E+02 0.0027 21.9 4.5 41 112-153 6-47 (81)
76 PF03785 Peptidase_C25_C: Pept 31.3 70 0.0015 23.2 3.2 42 279-320 7-49 (81)
77 PF13418 Kelch_4: Galactose ox 31.2 54 0.0012 20.6 2.5 18 186-203 3-20 (49)
78 PHA02790 Kelch-like protein; P 28.9 3.3E+02 0.0072 27.3 8.9 15 84-98 357-371 (480)
79 KOG0316 Conserved WD40 repeat- 27.4 4.6E+02 0.01 23.6 16.3 110 16-148 59-171 (307)
80 PF13964 Kelch_6: Kelch motif 26.0 65 0.0014 20.4 2.2 16 351-366 4-19 (50)
81 PF13854 Kelch_5: Kelch motif 24.9 79 0.0017 19.3 2.4 17 350-366 6-22 (42)
82 KOG1274 WD40 repeat protein [G 24.5 9.3E+02 0.02 26.1 21.7 70 78-149 13-85 (933)
83 PLN03215 ascorbic acid mannose 24.0 2.9E+02 0.0064 26.6 7.0 62 178-263 161-225 (373)
84 PF01436 NHL: NHL repeat; Int 23.9 1.4E+02 0.003 16.4 3.3 17 188-204 5-21 (28)
85 PF04841 Vps16_N: Vps16, N-ter 23.2 7.1E+02 0.015 24.3 26.4 69 123-201 81-152 (410)
86 TIGR03548 mutarot_permut cycli 23.1 6.1E+02 0.013 23.5 13.7 17 300-316 217-233 (323)
87 TIGR03300 assembly_YfgL outer 23.1 6.5E+02 0.014 23.9 24.1 20 297-316 320-339 (377)
88 KOG1034 Transcriptional repres 21.5 2.2E+02 0.0049 26.7 5.4 56 191-263 324-381 (385)
89 PF07494 Reg_prop: Two compone 21.5 1.4E+02 0.003 15.8 2.6 15 82-96 8-22 (24)
90 PF00167 FGF: Fibroblast growt 21.1 4E+02 0.0087 20.7 8.9 65 72-146 1-65 (122)
91 PLN00181 protein SPA1-RELATED; 21.0 1.1E+03 0.023 25.5 30.1 106 28-150 495-606 (793)
92 KOG0282 mRNA splicing factor [ 20.6 8.5E+02 0.018 24.3 18.9 23 27-49 226-248 (503)
93 KOG0316 Conserved WD40 repeat- 20.3 6.4E+02 0.014 22.7 19.5 57 297-365 239-297 (307)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.5e-51 Score=376.25 Aligned_cols=360 Identities=28% Similarity=0.480 Sum_probs=292.7
Q ss_pred cCCcEEEEeEcCCCCCcCCCCCCC-cccceeeCcc--CCCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCC----
Q 014529 35 LQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE---- 107 (423)
Q Consensus 35 ~~~g~v~~wG~n~~g~lG~~~~~~-~~~p~~~~~~--~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~---- 107 (423)
.+-..||+||.|...+||++..+. ...|+..++. ....|++++||..|+++|++||+||+||.|..|+||...
T Consensus 65 ~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~ 144 (476)
T COG5184 65 VKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDI 144 (476)
T ss_pred hheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccccc
Confidence 367789999999999999997665 4899998887 567899999999999999999999999999999999875
Q ss_pred -----------CCCccccceEeccC-----CCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCc----cccc
Q 014529 108 -----------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK----VIPI 167 (423)
Q Consensus 108 -----------~~~~~~~p~~~~~l-----~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~----~~~~ 167 (423)
......+|..++.. +.+++++.||++++++|+++|+||.||....+.++.+...++ ...+
T Consensus 145 ~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~ 224 (476)
T COG5184 145 CDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFT 224 (476)
T ss_pred ccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeee
Confidence 33446678888752 237999999999999999999999999998888888754433 2345
Q ss_pred ceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCC
Q 014529 168 PTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247 (423)
Q Consensus 168 p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 247 (423)
|.++. ...|+++++|..|.++|+++|+||.||++..||||+........ ....|+. +.-..|..|+||.
T Consensus 225 p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~-----~~lv~~~---f~i~~i~~vacG~ 293 (476)
T COG5184 225 PLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKL-----VVLVGDP---FAIRNIKYVACGK 293 (476)
T ss_pred eeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhccc-----ccccCCh---hhhhhhhhcccCc
Confidence 55544 45799999999999999999999999999999999887543321 1111221 2222478899999
Q ss_pred ceeEEEecCCCEEEEecCCCCccCcCCC----CCCCCCeeecCCC--CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCC
Q 014529 248 LHSACIDENGRVYIFGDRAVDKMLFQEG----NHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLG 321 (423)
Q Consensus 248 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~----~~~~~p~~v~~~~--~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG 321 (423)
+|+++|+++|++|+||.|.++|++.++. .....|....... .|..+++|..|+++|..+|.||+||.++.+|||
T Consensus 294 ~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg 373 (476)
T COG5184 294 DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG 373 (476)
T ss_pred ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence 9999999999999999999999999822 1223333333333 389999999999999999999999999999999
Q ss_pred CCC--CCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEecCCCCCCcccCCCCCCCcccCCCC-CCccccEE
Q 014529 322 IGS--IDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGND-VDYIHPTI 397 (423)
Q Consensus 322 ~~~--~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~~~~~~~~~~N~~gqlG~~~~-~~~~~p~~ 397 (423)
..+ +...+.|.++. ...++..++||..|.++.+ +|+||.||+ |++||||.++. ..+..|+.
T Consensus 374 ~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~------------ge~gnlG~g~~~~~~~~pt~ 438 (476)
T COG5184 374 IQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGW------------GEHGNLGNGPKEADVLVPTL 438 (476)
T ss_pred CcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecC------------chhhhccCCchhhhcccccc
Confidence 987 55556666654 3357999999999999999 999999999 69999999886 56778888
Q ss_pred EEe--CCCceEEEEeccCCceEEEE
Q 014529 398 VNF--GENVKALQVSCGFNHTGALL 420 (423)
Q Consensus 398 v~~--~~~~~v~~i~~G~~~t~~~~ 420 (423)
++. +....++..-||..++++.-
T Consensus 439 i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 439 IRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred ccccccCCCceEEeccCcceEEEec
Confidence 883 56678888888888877653
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=9.2e-46 Score=319.99 Aligned_cols=367 Identities=24% Similarity=0.390 Sum_probs=301.5
Q ss_pred cCCcEEEEeEcCCCCCcCCCC---CCCcccceeeCccCCCceEEEEcC--CcceEEEEcCCcEEEEecCCCCcccCCCCC
Q 014529 35 LQRRFAALWGNGDYGRLGLGS---LESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENI 109 (423)
Q Consensus 35 ~~~g~v~~wG~n~~g~lG~~~---~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~ 109 (423)
...|+...+|.-.--+.|..+ ..+...|.++..+.+.+|+-|+.| ..|+++|+-+|+.|.||+|..||||.+ +.
T Consensus 17 ~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg-D~ 95 (443)
T KOG1427|consen 17 EKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG-DM 95 (443)
T ss_pred cCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc-ch
Confidence 355666666654433444332 346889999999999999999865 789999999999999999999999999 66
Q ss_pred CccccceEeccCCC-ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCce
Q 014529 110 GYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQ 188 (423)
Q Consensus 110 ~~~~~p~~~~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~ 188 (423)
.....|+.|+.|.+ +|++-++|++|+++|+++|+||+||.|.+||||.++....+...| +......+|+.|+||..+
T Consensus 96 k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~--~~~~~~~~v~~v~cga~f 173 (443)
T KOG1427|consen 96 KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTP--LPCVVSDEVTNVACGADF 173 (443)
T ss_pred hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCC--CccccCccceeeccccce
Confidence 66778999998877 999999999999999999999999999999999998776443333 222335579999999999
Q ss_pred EEEEEcCCcEEEEecCCCCccCCCCCCccccc-----ccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEe
Q 014529 189 SVAVTGGGKVLSWGAGGSGRLGHGQESSILGF-----LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFG 263 (423)
Q Consensus 189 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~-----~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G 263 (423)
++.|+..+.+.++|.-.|||||++......-- .-......|.-+..+...+|++++||.+|+++++++++||.||
T Consensus 174 tv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWG 253 (443)
T KOG1427|consen 174 TVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWG 253 (443)
T ss_pred EEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEec
Confidence 99999999999999999999999886543210 0112233466677788889999999999999999999999999
Q ss_pred cCCCCccCcCCCCCCCCCeeecCCC----CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCC
Q 014529 264 DRAVDKMLFQEGNHARRPSLISKLP----YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFS 339 (423)
Q Consensus 264 ~n~~gqlg~~~~~~~~~p~~v~~~~----~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 339 (423)
..-||.||+.+.++...|+++..++ .-.++.||+..++.+.+-|+||.||.+.. +-+....|.++. .+.
T Consensus 254 FGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~-dls 326 (443)
T KOG1427|consen 254 FGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMM-DLS 326 (443)
T ss_pred cccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchh-hcC
Confidence 9999999999999999999988776 36789999999999999999999998762 222344566666 578
Q ss_pred CCCeEEEecCCceeEEEECCcEEEEecCCCCCCcccCCCCCCCcccCCCC-CCccccEEEEeCCCceEEEEeccCCceEE
Q 014529 340 ESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGND-VDYIHPTIVNFGENVKALQVSCGFNHTGA 418 (423)
Q Consensus 340 ~~~i~~i~~G~~h~~~l~~g~vy~wG~~~~~~~~~~~~~N~~gqlG~~~~-~~~~~p~~v~~~~~~~v~~i~~G~~~t~~ 418 (423)
..++..+.|+..|.++-.|.....||.. -..+-||.++- .....|..|+.++++++..|+||+.||++
T Consensus 327 gwnl~~~~~~~~h~~v~ad~s~i~wg~~-----------~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~v 395 (443)
T KOG1427|consen 327 GWNLRWMDSGSMHHFVGADSSCISWGHA-----------QYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMV 395 (443)
T ss_pred CccCCCcCccceeeeecccccccccccc-----------cccccccCccccccccCccccchhcceeccceeeccceEEE
Confidence 8999999999999887779999999983 13444555443 56778999999999999999999999999
Q ss_pred EEee
Q 014529 419 LLEY 422 (423)
Q Consensus 419 ~~~~ 422 (423)
++++
T Consensus 396 ivd~ 399 (443)
T KOG1427|consen 396 IVDR 399 (443)
T ss_pred EEcc
Confidence 9975
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.5e-44 Score=328.57 Aligned_cols=330 Identities=27% Similarity=0.417 Sum_probs=268.8
Q ss_pred hhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCC----------------CCCcccceeeCc----cCCCceEEE
Q 014529 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGS----------------LESRWRPVVCSA----FEKHSLKAL 76 (423)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~----------------~~~~~~p~~~~~----~~~~~i~~i 76 (423)
-.+.+.+||..++..+. .|+.||+||.|..|+||... .+....|..++. ....+++++
T Consensus 104 ~~i~~~acGg~hsl~ld--~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l 181 (476)
T COG5184 104 ASIIKIACGGNHSLGLD--HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKL 181 (476)
T ss_pred eeeEEeecCCceEEeec--CCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEe
Confidence 34567888888888887 99999999999999999865 112578888887 234579999
Q ss_pred EcCCcceEEEEcCCcEEEEecCCCCcccCCC-CCC----ccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCC
Q 014529 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISE-NIG----YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (423)
Q Consensus 77 ~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~-~~~----~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (423)
.||++++++|+++|+||.||....+.++.+. ... ..++|..++ ...|+++++|..|.++|+++|+||.||+|.
T Consensus 182 ~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~q 259 (476)
T COG5184 182 ACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQ 259 (476)
T ss_pred ecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCc
Confidence 9999999999999999999998877777662 222 234555554 458999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccceEecc-cCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccce
Q 014529 152 NGQLGLGKKAAKVIPIPTKVEC-LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (423)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~i~~-~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~ 230 (423)
.||||........ .+..+.. +.-..|++|+||.+|+++|+++|+||+||.|-++|++.++.... ......|.
T Consensus 260 kgqlG~~~~e~~~--~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~-----~a~~tk~~ 332 (476)
T COG5184 260 KGQLGRPTSERLK--LVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPN 332 (476)
T ss_pred ccccCCchhhhcc--cccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCccccc-----ceeecccc
Confidence 9999988766421 2222221 11223889999999999999999999999999999998832111 12344555
Q ss_pred eeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCC--CCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCC
Q 014529 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQE--GNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGE 308 (423)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~--~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~ 308 (423)
....+....|..++++..|+++|..+|.||.||.+..+|||..+ ...+..|.++....++.+++||..|.++.+.+|+
T Consensus 333 ~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gs 412 (476)
T COG5184 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGS 412 (476)
T ss_pred ccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCc
Confidence 56666667799999999999999999999999999999999998 6777888888888899999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCC-CCcCCCccccCC-CCCCCeEEEecCCceeEEEE
Q 014529 309 LYTWGSNENGCLGIGSI-DVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS 357 (423)
Q Consensus 309 vy~wG~n~~gqlG~~~~-~~~~~p~~v~~~-~~~~~i~~i~~G~~h~~~l~ 357 (423)
||+||.+++|+||+++. .....|+.+..+ ++..+++..-|+...+++..
T Consensus 413 vy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 413 VYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred eEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEec
Confidence 99999999999999854 455667777643 36678999999998888776
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3e-42 Score=298.19 Aligned_cols=315 Identities=28% Similarity=0.444 Sum_probs=267.6
Q ss_pred cceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEecCCCCcc
Q 014529 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQL 103 (423)
Q Consensus 24 ~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gql 103 (423)
|...|..++. -+++.|.||.|..||||+++...+..|+.++.|+..+|++.+||..|+++||.+|.+|.+|.|.+|||
T Consensus 65 ~~aaH~vli~--megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQl 142 (443)
T KOG1427|consen 65 CAAAHCVLID--MEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQL 142 (443)
T ss_pred cchhhEEEEe--cccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccc
Confidence 3345777776 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCC------------cccccceEe
Q 014529 104 GISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAA------------KVIPIPTKV 171 (423)
Q Consensus 104 g~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~------------~~~~~p~~i 171 (423)
|+++....+..|.++......|+.|+||..+++.|+..+.+..+|.-.+||||+++... +..|.|..+
T Consensus 143 Glgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i 222 (443)
T KOG1427|consen 143 GLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 222 (443)
T ss_pred cccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccc
Confidence 99987777666666655667999999999999999999999999999999999987653 234567777
Q ss_pred cccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccC--CccEEEEeeCCce
Q 014529 172 ECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE--GVKVKIAAAGFLH 249 (423)
Q Consensus 172 ~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~ 249 (423)
..+....|++++||.+|+++++++++||.||..-||+||+... ++...|+.++.+. ..--..+.||+.+
T Consensus 223 ~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEq---------KDEmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 223 ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQ---------KDEMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccc---------hhhHHHHHHHHhcCCCCCCcceeeeccc
Confidence 7888999999999999999999999999999999999999875 6778888887553 3345688999999
Q ss_pred eEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC--CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCC--CC
Q 014529 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG--SI 325 (423)
Q Consensus 250 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~--~~ 325 (423)
++.+.+-|.||.||.+... .+.-..|.++-.+. ++..+-+++.| +++..|..+.+||...++.++-+ -.
T Consensus 294 Sl~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h-~~v~ad~s~i~wg~~~~g~~lggp~~Q 366 (443)
T KOG1427|consen 294 SLNVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMH-HFVGADSSCISWGHAQYGELLGGPNGQ 366 (443)
T ss_pred ceeecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCcccee-eeecccccccccccccccccccCcccc
Confidence 9999999999999987732 23444555555544 78999999887 45566778999998877665444 35
Q ss_pred CCcCCCccccCCCCCCCeEEEecCCceeEEEE
Q 014529 326 DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS 357 (423)
Q Consensus 326 ~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~ 357 (423)
+....|.+++. +...+|-+|++|+.|++++.
T Consensus 367 kss~~Pk~v~~-l~~i~v~~VamGysHs~viv 397 (443)
T KOG1427|consen 367 KSSAAPKKVDM-LEGIHVMGVAMGYSHSMVIV 397 (443)
T ss_pred ccccCccccch-hcceeccceeeccceEEEEE
Confidence 66778999984 68889999999999999987
No 5
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.98 E-value=1.9e-31 Score=266.80 Aligned_cols=375 Identities=19% Similarity=0.246 Sum_probs=275.2
Q ss_pred HhhhhhhhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEc
Q 014529 9 MTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE 88 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~ 88 (423)
..+|++.+.+++.++++..+.|++..+++|+||+-|.+. ++|+..+.+.+...+++ .+|++|+.|-+..+|+.-
T Consensus 469 L~e~L~~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~~ 542 (3738)
T KOG1428|consen 469 LPEFLPANLHPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRSG 542 (3738)
T ss_pred chhhhccccCchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceEEecCC----CceEEEEeccchhheeec
Confidence 467888889999999999999999999999999999765 78888878878777776 579999999999999887
Q ss_pred CCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccc
Q 014529 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (423)
Q Consensus 89 ~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p 168 (423)
-|+=|+.-..+ ..+.......++.-+.+|+++.+...-.-.++++|++|+.|....- .....
T Consensus 543 A~~G~I~~v~D--------~k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~----------~n~SS 604 (3738)
T KOG1428|consen 543 AGHGWIASVDD--------KKRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR----------VNVSS 604 (3738)
T ss_pred cCcceEEeccC--------cccccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE----------ecchH
Confidence 66655543332 2222233344444556999998877777789999999999875321 11233
Q ss_pred eEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeec-----cCCccEEEE
Q 014529 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKE-----LEGVKVKIA 243 (423)
Q Consensus 169 ~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~-----~~~~~i~~i 243 (423)
+++..+.+..|.+++.|..|+++++.+|+||+||.|+.+|+|+-....+...++.......+..+. +.+..-+..
T Consensus 605 qmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa 684 (3738)
T KOG1428|consen 605 QMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCA 684 (3738)
T ss_pred HHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhh
Confidence 456677888999999999999999999999999999999999977665554444443333222221 111122223
Q ss_pred eeCCceeEE------EecCCCEEEEecCCCCccCcC--------C-------------------CCCCCCCeeecCCC--
Q 014529 244 AAGFLHSAC------IDENGRVYIFGDRAVDKMLFQ--------E-------------------GNHARRPSLISKLP-- 288 (423)
Q Consensus 244 ~~g~~~~~~------lt~~g~v~~~G~n~~gqlg~~--------~-------------------~~~~~~p~~v~~~~-- 288 (423)
.||.-.... -...|.+..+|....+-+-.+ . ......|.++...+
T Consensus 685 ~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~ 764 (3738)
T KOG1428|consen 685 QCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGP 764 (3738)
T ss_pred hcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCC
Confidence 333322211 134677777776655443221 0 01123344443322
Q ss_pred ---CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEE
Q 014529 289 ---YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTW 364 (423)
Q Consensus 289 ---~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~w 364 (423)
++++|+||..|+++|.+|++||++|+|.+||||+|++.....|++|.. +.+..+++|++|++|++++. ||+||++
T Consensus 765 Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTF 843 (3738)
T KOG1428|consen 765 HDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTF 843 (3738)
T ss_pred cceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEEEe
Confidence 589999999999999999999999999999999999999999999984 58889999999999999999 9999999
Q ss_pred ecCCCCCCcccCCCCCCCcccCCCCC---CccccEEEEeCC---CceEEEEeccCCceEEEE
Q 014529 365 GWGGSHGTFSEDGHSSGGQLGHGNDV---DYIHPTIVNFGE---NVKALQVSCGFNHTGALL 420 (423)
Q Consensus 365 G~~~~~~~~~~~~~N~~gqlG~~~~~---~~~~p~~v~~~~---~~~v~~i~~G~~~t~~~~ 420 (423)
|.- ..|||+.+--+ .-..|.+++.+. +..+..|.+.++.|++-.
T Consensus 844 GaF------------~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i~~ 893 (3738)
T KOG1428|consen 844 GAF------------GKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSIIHS 893 (3738)
T ss_pred ccc------------cCccccCccccccccccCCCcCCCCCccccccceeeccCCCcceeeh
Confidence 985 68999997543 234577776433 456788999998888754
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=5.3e-28 Score=234.17 Aligned_cols=299 Identities=26% Similarity=0.385 Sum_probs=227.4
Q ss_pred CCcEEEEeEcCCCCCcCCCCCCCcccceeeCccC--CCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccc
Q 014529 36 QRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE--KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSL 113 (423)
Q Consensus 36 ~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~--~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~ 113 (423)
.-..||+||.|.+..||+++..+...|..+..+. +.-+.||+.+..|++||++.|+||++|...-|+||.+ .....+
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~g-deq~~~ 218 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFG-DEQYNF 218 (1267)
T ss_pred CccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcC-cccccc
Confidence 4567999999999999999999999999999884 4567899999999999999999999999999999999 777788
Q ss_pred cceEeccCCC-ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecc--cCCc-eeEEEecCCceE
Q 014529 114 EPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC--LSGI-FTKQAALGFEQS 189 (423)
Q Consensus 114 ~p~~~~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~--~~~~-~i~~i~~G~~~~ 189 (423)
.|.+++.|.. ++.+|++...|+++||++|.||+||.|..+|||..+.... ...|.++.. +.+. .|+.|++|..|+
T Consensus 219 iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~-~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 219 IPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELK-KDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred cccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhh-cCchhhhhhHhhcchhhhhhhhccccee
Confidence 8888888554 9999999999999999999999999999999999776542 334444432 2222 699999999999
Q ss_pred EEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCc
Q 014529 190 VAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269 (423)
Q Consensus 190 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gq 269 (423)
++-|+. .||+||.| .||||..+.. .....|+.+... ...|..+.|....+++++.++.+|++-+.....
T Consensus 298 Vawt~~-~VY~wGlN-~GQlGi~~n~--------~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k 366 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLN-NGQLGISDNI--------SVVTTPRRLAGL-LSPVIHVVATTRATVCLLQNNSIIAFADYNQVK 366 (1267)
T ss_pred eeeecc-eEEEeccc-CceecCCCCC--------ceeecchhhccc-ccceEEEEecCccEEEEecCCcEEEEeccccee
Confidence 999976 79999998 7999977653 334566544332 247899999999999999999999987644333
Q ss_pred cCcCCCCCCCCCeeecCC------CCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCe
Q 014529 270 MLFQEGNHARRPSLISKL------PYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPV 343 (423)
Q Consensus 270 lg~~~~~~~~~p~~v~~~------~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i 343 (423)
+..+ .....-..|..- .++++..+...-.+++|+-|+||+|-++.... +.-...|..+. .|
T Consensus 367 ~~~n--~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~------~i 433 (1267)
T KOG0783|consen 367 LPFN--VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF------EI 433 (1267)
T ss_pred cCcc--hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeecccceee------eh
Confidence 2211 111111112111 13666667777789999999999999765211 11122333332 46
Q ss_pred EEEecCCceeEEEE-CCc
Q 014529 344 DQVSCGWKHTAAIS-EGK 360 (423)
Q Consensus 344 ~~i~~G~~h~~~l~-~g~ 360 (423)
.+|+--.+..++++ ||.
T Consensus 434 sdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 434 SDIAWTANSLILCTRDGC 451 (1267)
T ss_pred hhhhhccceEEEEecCcc
Confidence 68887778888889 993
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=202.86 Aligned_cols=269 Identities=20% Similarity=0.302 Sum_probs=203.0
Q ss_pred hhhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEE
Q 014529 14 LKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVY 93 (423)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~ 93 (423)
--+....++.+++.|+.|++ +.|+||++|.+.-|+||.++......|++++.+.+.+|.+|++...|+++||++|-||
T Consensus 174 ~Sg~~~~qV~l~kfHSvfl~--~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vy 251 (1267)
T KOG0783|consen 174 TSGQLFSQVQLSKFHSVFLT--EKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVY 251 (1267)
T ss_pred hccHHHHHHHHhhceeeEec--CCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEE
Confidence 33455567889999999998 8899999999999999999888899999999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccccceEeccCC----CceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccce
Q 014529 94 ATGLNDFGQLGISENIGYSLEPLRISGLK----KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPT 169 (423)
Q Consensus 94 ~wG~n~~gqlg~~~~~~~~~~p~~~~~l~----~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~ 169 (423)
.||.|.++|||+.+.......|.++.... +.|+.|+||..|+++-++. .||+||.| .||+|..+.. .....|.
T Consensus 252 s~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~-~~Vt~Pr 328 (1267)
T KOG0783|consen 252 SWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNI-SVVTTPR 328 (1267)
T ss_pred EeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCC-ceeecch
Confidence 99999999999987666666666654221 2899999999999999977 69999998 5999987774 4677786
Q ss_pred EecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeee----ccCCccEEEEee
Q 014529 170 KVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK----ELEGVKVKIAAA 245 (423)
Q Consensus 170 ~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~----~~~~~~i~~i~~ 245 (423)
.+.. ...+|..|.|....+++++.++.+|++-+ |.|.-..... .......+. .+.-..+++..+
T Consensus 329 ~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ad--y~~~k~~~n~---------~~lks~~V~gg~l~~~~~~~~k~~a 396 (1267)
T KOG0783|consen 329 RLAG-LLSPVIHVVATTRATVCLLQNNSIIAFAD--YNQVKLPFNV---------DFLKSLKVTGGPLSLTRFNVRKLLA 396 (1267)
T ss_pred hhcc-cccceEEEEecCccEEEEecCCcEEEEec--ccceecCcch---------hccceeEEecCccchhhhhhhhcch
Confidence 6543 35679999999999999999999999864 3332211110 000111111 011124667778
Q ss_pred CCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCC
Q 014529 246 GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGG 307 (423)
Q Consensus 246 g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g 307 (423)
.....+++|+-|+||+|-.+.... ..-...|.++- .|++|+--.+..+++|+||
T Consensus 397 ~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~---~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 397 SENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF---EISDIAWTANSLILCTRDG 450 (1267)
T ss_pred hhhheeeeccCCeEEEEecCCCce-----eeeecccceee---ehhhhhhccceEEEEecCc
Confidence 888889999999999997554211 01112222222 3667776668889999999
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-21 Score=196.45 Aligned_cols=319 Identities=18% Similarity=0.242 Sum_probs=213.8
Q ss_pred hhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEe
Q 014529 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATG 96 (423)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG 96 (423)
.++++++.|.-..+|.....+|-++.-|..+ .....+++..-+.++|+.|.+...-.-.+.++|++|+.|
T Consensus 525 ~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G 594 (3738)
T KOG1428|consen 525 EPIVQISVGIDTIMFRSGAGHGWIASVDDKK----------RNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGG 594 (3738)
T ss_pred CceEEEEeccchhheeeccCcceEEeccCcc----------cccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeec
Confidence 4678888888888888888888777766443 222334444445678999988777778899999999999
Q ss_pred cCCCCcccCCCCCCccccceEeccCCC-ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEe----
Q 014529 97 LNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV---- 171 (423)
Q Consensus 97 ~n~~gqlg~~~~~~~~~~p~~~~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i---- 171 (423)
.... ........+..|+. -|.+++.|..|.++++.+|+||.||.|..+|+|.-..... ...|..-
T Consensus 595 ~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sT-t~s~~~s~~~e 664 (3738)
T KOG1428|consen 595 LHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTST-TSSPRHSGRQE 664 (3738)
T ss_pred ceeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccc-cCCccccccee
Confidence 6421 11122334444554 7889999999999999999999999999999997443321 1111110
Q ss_pred ---------cccCCceeEEEecCCce----EEE--EEcCCcEEEEecCCCCccCCCCCCccc------------------
Q 014529 172 ---------ECLSGIFTKQAALGFEQ----SVA--VTGGGKVLSWGAGGSGRLGHGQESSIL------------------ 218 (423)
Q Consensus 172 ---------~~~~~~~i~~i~~G~~~----~~~--lt~~g~v~~~G~n~~gqlg~~~~~~~~------------------ 218 (423)
.-+.+.+.+...||.-. ++. -.-.|.+-.+|.+..+.+-.+-....-
T Consensus 665 ~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~s 744 (3738)
T KOG1428|consen 665 YQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSS 744 (3738)
T ss_pred ecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecc
Confidence 01112222333333211 111 122466777777666654433211110
Q ss_pred ccccccccccceeee---ccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC--CcceE
Q 014529 219 GFLRSTSEYTPRLIK---ELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEV 293 (423)
Q Consensus 219 ~~~~~~~~~~p~~i~---~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~i 293 (423)
.-.+......|..+. ...+.++.+|+||++|+++|-++++||.+|.|.+||||.++......|+++..+. -+++|
T Consensus 745 taa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQV 824 (3738)
T KOG1428|consen 745 TAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQV 824 (3738)
T ss_pred cccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEE
Confidence 001112223333333 2234578999999999999999999999999999999999999999999888766 49999
Q ss_pred EeeCCeeEEEEcCCCEEEEeCCCCCCCCCCC---CCCcCCCccccCCC--CCCCeEEEecCCceeEE
Q 014529 294 VCGGYHTCVLTSGGELYTWGSNENGCLGIGS---IDVLHSPERVQGPF--SESPVDQVSCGWKHTAA 355 (423)
Q Consensus 294 ~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~---~~~~~~p~~v~~~~--~~~~i~~i~~G~~h~~~ 355 (423)
++|++|++++.+||+||++|.-..|||+..- .-....|.+++..- .+.....|.+..+.+++
T Consensus 825 aAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 825 AAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred ecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 9999999999999999999999999999863 23345677776522 33344556555555543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.34 E-value=9.3e-13 Score=88.21 Aligned_cols=50 Identities=42% Similarity=0.751 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCCCcccCCCCCCCccc-CCCCCCccccEEEEeCCCceEEEEeccCCceEEE
Q 014529 358 EGKILTWGWGGSHGTFSEDGHSSGGQLG-HGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 419 (423)
Q Consensus 358 ~g~vy~wG~~~~~~~~~~~~~N~~gqlG-~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~~ 419 (423)
||+||+||+ |++|||| .+.......|++|+.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~------------n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGS------------NDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEE------------ETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEEC------------CCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 799999999 7999999 7778889999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=8.4e-12 Score=83.52 Aligned_cols=50 Identities=32% Similarity=0.531 Sum_probs=47.4
Q ss_pred CcEEEEeEcCCCCCcC-CCCCCCcccceeeCccCCCceEEEEcCCcceEEE
Q 014529 37 RRFAALWGNGDYGRLG-LGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL 86 (423)
Q Consensus 37 ~g~v~~wG~n~~g~lG-~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l 86 (423)
||+||+||.|.+|||| ..+......|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7788889999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.08 E-value=1.6e-10 Score=67.20 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=25.8
Q ss_pred eEEEecCCceEEEEEcCCcEEEEecCCCCc
Q 014529 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGR 208 (423)
Q Consensus 179 i~~i~~G~~~~~~lt~~g~v~~~G~n~~gq 208 (423)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.07 E-value=2.1e-10 Score=66.64 Aligned_cols=30 Identities=57% Similarity=1.237 Sum_probs=25.7
Q ss_pred cceEEeeCCeeEEEEcCCCEEEEeCCCCCC
Q 014529 290 SEEVVCGGYHTCVLTSGGELYTWGSNENGC 319 (423)
Q Consensus 290 i~~i~~G~~~~~~lt~~g~vy~wG~n~~gq 319 (423)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 679999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-11 Score=121.38 Aligned_cols=147 Identities=28% Similarity=0.458 Sum_probs=127.1
Q ss_pred ceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCC
Q 014529 168 PTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247 (423)
Q Consensus 168 p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 247 (423)
|.++..+...++.+++||++|+++++..|+++.||.|.++|++++.. .....|..++.+.+.+.+.|++|.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~---------~~~~~p~~~~sl~g~p~a~v~~g~ 75 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY---------FPDAKPEPVESLKGVPLAQVSAGE 75 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc---------CCCCCCccchhhcCCcHHHHhcCC
Confidence 44444455567999999999999999999999999999999999832 222338889999999999999999
Q ss_pred ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCC
Q 014529 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDV 327 (423)
Q Consensus 248 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~ 327 (423)
.|++++.. |+++++.+|.++.+|....+|+|+.....
T Consensus 76 ~hs~~lS~-------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~ 112 (850)
T KOG0941|consen 76 AHSFALSS-------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTEN 112 (850)
T ss_pred Ccchhhhh-------------------------------------------chhhcchhccccccCCccccccccccccc
Confidence 99999875 99999999999999999999999977777
Q ss_pred cCCCccccCCCCCCCeEEEecCCceeEEEE--CCcEEEEecC
Q 014529 328 LHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWGWG 367 (423)
Q Consensus 328 ~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~--~g~vy~wG~~ 367 (423)
...|..+. .+....+..|+||-.|+++.. -|++|..|.+
T Consensus 113 ~~~~~~v~-e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~ 153 (850)
T KOG0941|consen 113 EVLPLLVL-ELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKG 153 (850)
T ss_pred ccccHHHH-HHHhhhhHHHHHHHHHHHhhhhhhcceeecccC
Confidence 77787776 467789999999999998887 7999999995
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.6e-11 Score=117.43 Aligned_cols=145 Identities=28% Similarity=0.431 Sum_probs=116.6
Q ss_pred ccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCC-ceEEEEcCCceeEEE
Q 014529 60 WRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAI 138 (423)
Q Consensus 60 ~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~-~i~~i~~G~~~~~~l 138 (423)
..|+.+..++-..|.|++||..|+++++..|++++||.|..||++.+....... |.+++.+.. +..+|++|..|++++
T Consensus 3 ~~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~l 81 (850)
T KOG0941|consen 3 RAPRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFAL 81 (850)
T ss_pred chhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhh
Confidence 345666666667899999999999999999999999999999999883333333 777776554 888999999988777
Q ss_pred ec-------CCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEE-cCCcEEEEecCCCC
Q 014529 139 TV-------DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT-GGGKVLSWGAGGSG 207 (423)
Q Consensus 139 t~-------~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt-~~g~v~~~G~n~~g 207 (423)
+. +|.++++|....+|+|+....+ ...|..+...-+..+.+|+|+..|+.+.- .-|++|.+|.+..|
T Consensus 82 S~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~--~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 82 SSHTVLLTDEGKVFSFGAGSTGQLGHSLTEN--EVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred hhchhhcchhccccccCCccccccccccccc--ccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 66 9999999999999999955554 34555555555678999999999988764 56899999988776
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=96.27 E-value=0.25 Score=54.65 Aligned_cols=106 Identities=10% Similarity=0.032 Sum_probs=66.4
Q ss_pred cceEE-eeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCcee-EEEE-CCcEEEEec
Q 014529 290 SEEVV-CGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AAIS-EGKILTWGW 366 (423)
Q Consensus 290 i~~i~-~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~-~~l~-~g~vy~wG~ 366 (423)
|..++ .+.++.++|++.|++-..=.- ..|..+..+-....|++++.-..|. +|++ +|++|.-=.
T Consensus 705 i~a~Avv~~~~fvald~qg~lt~h~k~-------------g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k 771 (1774)
T PF11725_consen 705 ITAFAVVNDNKFVALDDQGDLTAHQKP-------------GRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPK 771 (1774)
T ss_pred ceeEEEEcCCceEEeccCCccccccCC-------------CCCccCCCCCCCcchhheeeccccceeEecCCCceeecCH
Confidence 44444 466788888888887653211 1255555444456899999998866 6788 999997322
Q ss_pred CCCCCCcccCCCCCCCcccCCCCCCccccEEEEeCCCceEEEEeccCCceEEEEe
Q 014529 367 GGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 421 (423)
Q Consensus 367 ~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~~~~ 421 (423)
. .=|-+.........+++|..+.+.+|..+....+|.+.+.-
T Consensus 772 ~-------------~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 772 E-------------AWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred H-------------HhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEe
Confidence 1 01111111122356666776677788888888888887653
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.57 E-value=0.18 Score=55.60 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=70.9
Q ss_pred eeccCCccEEEEe-eCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC--CC-CcceEEeeCCe-eEEEEcC
Q 014529 232 IKELEGVKVKIAA-AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK--LP-YSEEVVCGGYH-TCVLTSG 306 (423)
Q Consensus 232 i~~~~~~~i~~i~-~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~--~~-~i~~i~~G~~~-~~~lt~~ 306 (423)
+..+++..|..++ .+.+..++++++|++-..= . .-.|..++. +. .|++++.=..| .++++.+
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~ 763 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSRPGLSGEIKDLALDEKQNLYALTST 763 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCCCCCCcchhheeeccccceeEecCC
Confidence 4445555666554 3667888899999887641 0 011444443 23 79999987664 4679999
Q ss_pred CCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CC
Q 014529 307 GELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EG 359 (423)
Q Consensus 307 g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g 359 (423)
|+||+.-.-..... -........+++|..| .+.+|..+....+|.+.+. ++
T Consensus 764 G~Lf~~~k~~WQ~~-~~~~~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 764 GELFRLPKEAWQGN-AEGDQMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CceeecCHHHhhCc-ccCCccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 99998432211111 1111112455666655 7789999999999999888 54
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.49 E-value=3.3 Score=36.77 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=35.8
Q ss_pred CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEeeCC--eeEEEEcCCCEEEEeCCC
Q 014529 247 FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY--HTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 247 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~ 316 (423)
..+-+.-+.+|.++.|-.... .-.....|... ..|.+++...+ ..++.++.|+.|+|-.-.
T Consensus 136 QteLis~dqsg~irvWDl~~~------~c~~~liPe~~---~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGEN------SCTHELIPEDD---TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cceEEeecCCCcEEEEEccCC------ccccccCCCCC---cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 334455578999999943221 11112222222 24666666554 446678999999999654
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.95 E-value=3.9 Score=40.63 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=68.1
Q ss_pred cCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC-ceeEEEecCCcEE-EEeCCCCCCC
Q 014529 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITVDGELY-MWGKNSNGQL 155 (423)
Q Consensus 78 ~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~-~~~~~lt~~G~vy-~~G~n~~gql 155 (423)
.|.....+|.++|++|.= -|+...... -...++-.-...+.+|++|. .-..+|+++|.|+ --|-..+.+.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~-GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPC-GRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCC-CceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 456667788999998872 122111110 00111110111688999999 7788999999975 4666666666
Q ss_pred CCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEE
Q 014529 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (423)
Q Consensus 156 g~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~ 201 (423)
|..=. .++.|.... .++.|+.|....-+||.+|.+|.=
T Consensus 262 GdsWk---dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 262 GDSWK---DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred Cchhh---hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 64221 233443322 289999999999999999999864
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.29 E-value=1.2 Score=43.93 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=70.9
Q ss_pred eCCceeEEEecCCCEEEEecCCCCccCcCCCCC-CCCCeeecCCCCcceEEeeC-CeeEEEEcCCCEE-EEeCCCCCCCC
Q 014529 245 AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNH-ARRPSLISKLPYSEEVVCGG-YHTCVLTSGGELY-TWGSNENGCLG 321 (423)
Q Consensus 245 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~i~~i~~G~-~~~~~lt~~g~vy-~wG~n~~gqlG 321 (423)
.|.....+|.++|++|. +-|...... -...+.+...+++.+|++|. .-..+++.+|.|+ -.|.....+.|
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~G 262 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEG 262 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCC
Confidence 66677888999999986 222222111 12233444445799999998 5667899999976 57776666665
Q ss_pred CCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEE
Q 014529 322 IGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILT 363 (423)
Q Consensus 322 ~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~ 363 (423)
..-. +..+|... ..++.|+.|....-+|+ ||.+|.
T Consensus 263 dsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 263 DSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred chhh-hccCcccc------cceEEEEeccceEEEEecCCcEEE
Confidence 4322 33344333 35899999999999999 999975
No 20
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.84 E-value=8.7 Score=37.10 Aligned_cols=210 Identities=13% Similarity=0.111 Sum_probs=95.1
Q ss_pred CCCceEEEEcCCceeEEE--ecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcE
Q 014529 121 LKKEVVQISTGYHHSSAI--TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198 (423)
Q Consensus 121 l~~~i~~i~~G~~~~~~l--t~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v 198 (423)
++.++..+++...-.+++ +..|++|.|--++---|. . .....++....+++--+.|.+--.+||.|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~----------v--~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN----------V--LSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH----------H--HHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 456788887765544333 468999999755321111 0 01112222233333334444445578899
Q ss_pred EEEecCCCCccCCCCCCcccccccccccccceeeecc--CCccEEEEeeCCce--eEEE--ecCCCEEEEecCCCCccCc
Q 014529 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGFLH--SACI--DENGRVYIFGDRAVDKMLF 272 (423)
Q Consensus 199 ~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~--~~~l--t~~g~v~~~G~n~~gqlg~ 272 (423)
.+|=.-+- - + ..+...|..+..+ ....|+++.+|..- +.++ ..|..+-+|--..
T Consensus 148 ~vW~l~~l---v--~---------a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------ 207 (476)
T KOG0646|consen 148 LVWLLTDL---V--S---------ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------ 207 (476)
T ss_pred EEEEEEee---c--c---------cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------
Confidence 99943211 0 0 1111133333333 34578888777652 2222 3344455552211
Q ss_pred CCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCCC-CCC-CCC----CCCCcCCCccccCCCCCCCeEEE
Q 014529 273 QEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNEN-GCL-GIG----SIDVLHSPERVQGPFSESPVDQV 346 (423)
Q Consensus 273 ~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~-gql-G~~----~~~~~~~p~~v~~~~~~~~i~~i 346 (423)
.........+...+..-+.-+..+.++=+++|.+|..-...- +|- |.. .......+..+- .-....|+.+
T Consensus 208 ---g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~~~~~ITcL 283 (476)
T KOG0646|consen 208 ---GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HENESAITCL 283 (476)
T ss_pred ---ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc-ccCCcceeEE
Confidence 011111111111122233345566677788888876432211 010 000 001111111111 1122456666
Q ss_pred ecCCceeEEEE---CCcEEEEec
Q 014529 347 SCGWKHTAAIS---EGKILTWGW 366 (423)
Q Consensus 347 ~~G~~h~~~l~---~g~vy~wG~ 366 (423)
+...+-++.+. ||+|-+|=.
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEec
Confidence 66666666665 677777765
No 21
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.58 E-value=6.2 Score=38.07 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=72.3
Q ss_pred eeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEE--cCCcEEEEecCCCCccc
Q 014529 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLT--ETGCVYATGLNDFGQLG 104 (423)
Q Consensus 27 ~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt--~~G~v~~wG~n~~gqlg 104 (423)
.-.++...+-.+.+|.|=-+. |.| -+... ..- ..|..+....+-+++++ .||.|++|=-.+--
T Consensus 92 ~G~~l~ag~i~g~lYlWelss-G~L-----L~v~~----aHY--Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv--- 156 (476)
T KOG0646|consen 92 LGYFLLAGTISGNLYLWELSS-GIL-----LNVLS----AHY--QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV--- 156 (476)
T ss_pred CceEEEeecccCcEEEEEecc-ccH-----HHHHH----hhc--cceeEEEEeCCCcEEEecCCCccEEEEEEEeec---
Confidence 355666666788899997654 222 01110 000 24666666666666666 47889999643211
Q ss_pred CCCCCCccccceEeccCCC---ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEE
Q 014529 105 ISENIGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ 181 (423)
Q Consensus 105 ~~~~~~~~~~p~~~~~l~~---~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~ 181 (423)
.......|.++..+.+ .|+++.+|..- .+.+||+-+....-.+-.-... ..-..+......+-+.
T Consensus 157 ---~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS~g----~LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 157 ---SADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLSLG----VLLLTITFPSSIKAVA 224 (476)
T ss_pred ---ccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEEEEeccc----eeeEEEecCCcceeEE
Confidence 1111113333433443 78888887664 3445555433221111000000 0000111111222333
Q ss_pred EecCCceEEEEEcCCcEEEE
Q 014529 182 AALGFEQSVAVTGGGKVLSW 201 (423)
Q Consensus 182 i~~G~~~~~~lt~~g~v~~~ 201 (423)
+.-+..+.++=+++|++|..
T Consensus 225 lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred EcccccEEEecCCcceEEee
Confidence 44566777777889988875
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.023 Score=59.81 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=87.5
Q ss_pred CCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCC---CCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEE
Q 014529 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE---NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYM 146 (423)
Q Consensus 70 ~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~---~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~ 146 (423)
..+++.|.+-.+..++|.++|++|.|-....--+-.+- .....+....+-.-.++|+.+++..-...++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 34678888888889999999999999886544332210 112223333333345699999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCC
Q 014529 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG 205 (423)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~ 205 (423)
|=. .+|.+-...-.....+++ ...++.+++..|...|.++..+++.+|.||---
T Consensus 453 WlD----EcgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 453 WLD----ECGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred HHh----hhhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 842 222221111001111122 235677888888999999999999999999643
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.08 E-value=5.2 Score=38.10 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=41.9
Q ss_pred CCCceEEEEcCCceeEEEec--CCcEEEEeCCCCCCCCCCCCCCcccccceEec--ccCCceeEEEecCCceEEEE--Ec
Q 014529 121 LKKEVVQISTGYHHSSAITV--DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALGFEQSVAV--TG 194 (423)
Q Consensus 121 l~~~i~~i~~G~~~~~~lt~--~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~--~~~~~~i~~i~~G~~~~~~l--t~ 194 (423)
...+|.+++...+.-++|.+ +.++..|--.+. ..+.+.. .....-|.....|.+..++. ++
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-------------hHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 34588888876655555543 677888864211 1111111 11233577777777766666 58
Q ss_pred CCcEEEEec
Q 014529 195 GGKVLSWGA 203 (423)
Q Consensus 195 ~g~v~~~G~ 203 (423)
|++||.|-.
T Consensus 461 D~kvyIWhr 469 (519)
T KOG0293|consen 461 DSKVYIWHR 469 (519)
T ss_pred CceEEEEEc
Confidence 899999954
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.16 E-value=25 Score=36.38 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=58.4
Q ss_pred CCcEEEEeEcCCCCCcCCCCCCCc-ccceeeCccCCCceEEEEcCCcceEEE--EcCCcEEEEecCCCCcccCCCCCCcc
Q 014529 36 QRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYS 112 (423)
Q Consensus 36 ~~g~v~~wG~n~~g~lG~~~~~~~-~~p~~~~~~~~~~i~~i~~g~~~~~~l--t~~G~v~~wG~n~~gqlg~~~~~~~~ 112 (423)
..|...+.|+..-|||..-+-... ..-.+--.+ .+|..++-..+..++. .+||+|=+|-..+.-
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf----------- 383 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF----------- 383 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEEeccCce-----------
Confidence 567789999999999886532111 111111111 2466666665544444 357888888654311
Q ss_pred ccceEeccCCC--ceEEEEcCCceeEEEecCCcEEEEeCCCC
Q 014529 113 LEPLRISGLKK--EVVQISTGYHHSSAITVDGELYMWGKNSN 152 (423)
Q Consensus 113 ~~p~~~~~l~~--~i~~i~~G~~~~~~lt~~G~vy~~G~n~~ 152 (423)
.-+.+..-.. ..++++.-.+..+...=||.|.+|--+.+
T Consensus 384 -C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 384 -CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred -EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 1111111111 45666666677777777999999987654
No 25
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=0.025 Score=59.60 Aligned_cols=134 Identities=18% Similarity=0.127 Sum_probs=88.0
Q ss_pred ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceE-ecccCCceeEEEecCCceEEEEEcCCcEEEEe
Q 014529 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAALGFEQSVAVTGGGKVLSWG 202 (423)
Q Consensus 124 ~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G 202 (423)
+++.|.+-.+..++|..+|++|.|-....--+-..-...+....|.. .-.+-+.+|+.+++..-..-++|++|+|..|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 89999999999999999999999987664433322222222233322 12356789999999999999999999999994
Q ss_pred cCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCc
Q 014529 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269 (423)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gq 269 (423)
+ .+|.+...+ ...+.+.-.......+++..|...|.++...++-+|-||.-...+
T Consensus 455 D----EcgagV~fk--------La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 455 D----ECGAGVAFK--------LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred h----hhhhhhhhh--------hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 3 222222111 011111111223345667778888888888999999999655544
No 26
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.50 E-value=2.5 Score=37.38 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=46.4
Q ss_pred CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCC-CCCCcCCCccccCCCCCCCeEEEecCCceeEEEE--CCcEEEEe
Q 014529 289 YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG-SIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWG 365 (423)
Q Consensus 289 ~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~-~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~--~g~vy~wG 365 (423)
.+..+.+-..+.+++|++|.+|+|-.......-.. +..+.-.+...........|+.+....+..-+++ +|+.|+|=
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 57778888888999999999999986653222111 0000000000000024457777777766665555 88888875
Q ss_pred c
Q 014529 366 W 366 (423)
Q Consensus 366 ~ 366 (423)
.
T Consensus 94 ~ 94 (219)
T PF07569_consen 94 P 94 (219)
T ss_pred c
Confidence 4
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.18 E-value=18 Score=31.96 Aligned_cols=98 Identities=7% Similarity=0.029 Sum_probs=49.0
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCC--cceEEEEcCCcEEEEecCCCCcccCC
Q 014529 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGIS 106 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~--~~~~~lt~~G~v~~wG~n~~gqlg~~ 106 (423)
..+.+...++.++.|-..... ....+.. ....+..+.... ...++...+|.|++|-....
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------ 83 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-----------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------ 83 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-----------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------
Confidence 445555568888888554321 1111111 122344444432 24555566899999865421
Q ss_pred CCCCccccceEeccCCCceEEEEcCCc-eeEEEec-CCcEEEEeCC
Q 014529 107 ENIGYSLEPLRISGLKKEVVQISTGYH-HSSAITV-DGELYMWGKN 150 (423)
Q Consensus 107 ~~~~~~~~p~~~~~l~~~i~~i~~G~~-~~~~lt~-~G~vy~~G~n 150 (423)
.....+......|..+..... ..++... +|.|+.|-..
T Consensus 84 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 84 ------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred ------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 111222222235666655443 3444444 8889888654
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=86.94 E-value=28 Score=32.83 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=62.4
Q ss_pred hhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEc--CCcEEEE
Q 014529 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE--TGCVYAT 95 (423)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~--~G~v~~w 95 (423)
...-+++.-+-.++.+...|.+.|+|-.+.. ..+..+..-. ..|+.+....+.+++-|- +|+|.+|
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~g-----------e~~~eltgHK-DSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTG-----------EFAGELTGHK-DSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCC-----------cceeEecCCC-CceEEEEEccCceEEEecCCCccEEEE
Confidence 3333444445566666777777777765531 1333333322 368888888888887776 4888888
Q ss_pred ecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEEeCCCCCC
Q 014529 96 GLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQ 154 (423)
Q Consensus 96 G~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n~~gq 154 (423)
=....+ ....+..--..|.-+.-- ....++=+++|.||+|--++.++
T Consensus 134 ~~stg~------------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 134 KVSTGG------------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred EcccCc------------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce
Confidence 543211 111111001134433322 22345567899999998766433
No 29
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=85.49 E-value=57 Score=35.09 Aligned_cols=174 Identities=12% Similarity=0.141 Sum_probs=90.7
Q ss_pred hhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccce--eeCccCCCceEEEEcC-----CcceEEEEc
Q 014529 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACG-----GAHTLFLTE 88 (423)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~--~~~~~~~~~i~~i~~g-----~~~~~~lt~ 88 (423)
+|....+..+..+..++.-+++|++|..=.. .+....-...-.|. .++..++++|+.+.+- ....+++|+
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~ 610 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATK 610 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeC
Confidence 4444455555555545555688999988322 33322111222221 2344466778876652 235788899
Q ss_pred CCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEE--cCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccc
Q 014529 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIP 166 (423)
Q Consensus 89 ~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~ 166 (423)
+|.+--.-.+.+-... ..-..-..+.. ++.++.+. ....+.+++|++|++|.+-.......+.......
T Consensus 611 ~GyiKRi~l~~~~~~~-----r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~--- 681 (800)
T TIGR01063 611 NGVVKKTSLTEFSNIR-----SNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR--- 681 (800)
T ss_pred CCEEEEEEhHHhhhhc-----cCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee---
Confidence 9977654322211000 00000011111 23444433 3445689999999999997766555543332211
Q ss_pred cceEecccCCceeEEEec--CCceEEEEEcCCcEEEEecC
Q 014529 167 IPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 167 ~p~~i~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~~G~n 204 (423)
.+..-++++|+.+.+ ...+.+++|+.|.+.-.-..
T Consensus 682 ---~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 682 ---GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred ---cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 122234566776654 23357788888877666433
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.78 E-value=7.4 Score=34.44 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCceeEEEecCCcEEEEeCCC
Q 014529 121 LKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (423)
Q Consensus 121 l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (423)
++.+++.+.+-.++.++||++|.+|+|--..
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 4568899999999999999999999997543
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=81.48 E-value=37 Score=29.86 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=34.2
Q ss_pred ceEEEEcCCc-ceEEEEc-CCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC-ceeEEEec-CCcEEEE
Q 014529 72 SLKALACGGA-HTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITV-DGELYMW 147 (423)
Q Consensus 72 ~i~~i~~g~~-~~~~lt~-~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~-~~~~~lt~-~G~vy~~ 147 (423)
.|..+..... ..++... +|.|+.|-..... ....+......|..+.... ...++... +|.|+.|
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 4666665443 3344444 8889988653211 0111111223566665544 33333444 8888888
Q ss_pred eCC
Q 014529 148 GKN 150 (423)
Q Consensus 148 G~n 150 (423)
-..
T Consensus 163 d~~ 165 (289)
T cd00200 163 DLR 165 (289)
T ss_pred Ecc
Confidence 653
No 32
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=79.77 E-value=77 Score=32.95 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=54.8
Q ss_pred EcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCC-cEEEEeCCCCCCC
Q 014529 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDG-ELYMWGKNSNGQL 155 (423)
Q Consensus 77 ~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G-~vy~~G~n~~gql 155 (423)
+.|..|-+++. ||.|-.|..+.- .....+|..++....-++++|.-. +|-.|-- |.
T Consensus 139 SVGsQHDMIVn----v~dWr~N~~~as---------------nkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl----~~ 195 (1080)
T KOG1408|consen 139 SVGSQHDMIVN----VNDWRVNSSGAS---------------NKISSVVSAVAFSEDGSYFVTSGNRHVKLWYL----QI 195 (1080)
T ss_pred eeccccceEEE----hhhhhhcccccc---------------cccceeEEEEEEccCCceeeeeeeeeEEEEEe----ec
Confidence 34555555654 778887754320 002235555555555555555432 2333321 11
Q ss_pred CCCCCCCcccccceE---ecccCCceeEEEecCCc----eEEEEEcCCcEEEEe
Q 014529 156 GLGKKAAKVIPIPTK---VECLSGIFTKQAALGFE----QSVAVTGGGKVLSWG 202 (423)
Q Consensus 156 g~~~~~~~~~~~p~~---i~~~~~~~i~~i~~G~~----~~~~lt~~g~v~~~G 202 (423)
+ ..-....|.|-+ +..+.+..+..|+||.. .+++||..|.+--|-
T Consensus 196 ~--~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 196 Q--SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred c--ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 1 111112333333 23345556889999988 899999999988763
No 33
>PHA02713 hypothetical protein; Provisional
Probab=76.99 E-value=49 Score=33.94 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=14.0
Q ss_pred CCceeEEEecCCcEEEEeCC
Q 014529 131 GYHHSSAITVDGELYMWGKN 150 (423)
Q Consensus 131 G~~~~~~lt~~G~vy~~G~n 150 (423)
.+.+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444555668899999974
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.41 E-value=40 Score=34.68 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=32.0
Q ss_pred EEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEec
Q 014529 302 VLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (423)
Q Consensus 302 ~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~ 366 (423)
+..-++.||+.|..+. +... .......|..-.. ..+..+.....+..+.. ++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~-~~VE~ydp~~~~W----~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL-SSVERYDPETNQW----TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc-ceEEEEcCCCCce----eEcccCccccccccEEEECCEEEEEec
Confidence 5555789999996653 1100 1111122222111 13334556666666666 999999874
No 35
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=72.90 E-value=7.4 Score=22.91 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.6
Q ss_pred CceEEEEcCC-ceeEEEecCCcEEE
Q 014529 123 KEVVQISTGY-HHSSAITVDGELYM 146 (423)
Q Consensus 123 ~~i~~i~~G~-~~~~~lt~~G~vy~ 146 (423)
..+++|++|. ....+++.+|+||.
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~ 32 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYR 32 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEE
Confidence 5899999999 88899999999986
No 36
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=70.90 E-value=8.6 Score=22.60 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.7
Q ss_pred CceEEEEcCC-cceEEEEcCCcEEEE
Q 014529 71 HSLKALACGG-AHTLFLTETGCVYAT 95 (423)
Q Consensus 71 ~~i~~i~~g~-~~~~~lt~~G~v~~w 95 (423)
..+++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3699999999 888999999999863
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.78 E-value=1.4e+02 Score=31.25 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=52.5
Q ss_pred eEEEecCCCEEEEecCCCCccCcCCC-CCCCCCeeecCCCCcceEEeeCCeeEEE--EcCCCEEEEeCCCCCCCCCCCCC
Q 014529 250 SACIDENGRVYIFGDRAVDKMLFQEG-NHARRPSLISKLPYSEEVVCGGYHTCVL--TSGGELYTWGSNENGCLGIGSID 326 (423)
Q Consensus 250 ~~~lt~~g~v~~~G~n~~gqlg~~~~-~~~~~p~~v~~~~~i~~i~~G~~~~~~l--t~~g~vy~wG~n~~gqlG~~~~~ 326 (423)
++++...|...++|....|||..=+. ......++-.....+..++-..+-.++. .+||+|-.|.....
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--------- 382 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--------- 382 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---------
Confidence 44455567777777777777654221 1111112212223354554444433332 36777777775431
Q ss_pred CcCCCccccCCCCCC--CeEEEecCCceeEEEE-CCcEEEEec
Q 014529 327 VLHSPERVQGPFSES--PVDQVSCGWKHTAAIS-EGKILTWGW 366 (423)
Q Consensus 327 ~~~~p~~v~~~~~~~--~i~~i~~G~~h~~~l~-~g~vy~wG~ 366 (423)
.-.+.+.-... ...+++.-.+..+-.+ ||.|-+|-.
T Consensus 383 ----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 383 ----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred ----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 11122111222 3345555555556666 999999986
No 38
>PRK05560 DNA gyrase subunit A; Validated
Probab=70.66 E-value=1.6e+02 Score=31.80 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=88.8
Q ss_pred hhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccce--eeCccCCCceEEEEcCC-----cceEEEEc
Q 014529 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACGG-----AHTLFLTE 88 (423)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~--~~~~~~~~~i~~i~~g~-----~~~~~lt~ 88 (423)
+|....+..+..+.-++.-++.|++|..=... +....-...-.|. .+...++++|+.+.+-. ...+++|+
T Consensus 536 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk 612 (805)
T PRK05560 536 DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATK 612 (805)
T ss_pred CCeeEEEEEecCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeC
Confidence 34444444555544444455888888875443 2222111222222 23444667888876644 34688899
Q ss_pred CCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEE--cCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccc
Q 014529 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIP 166 (423)
Q Consensus 89 ~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~ 166 (423)
+|.+----.+.+-.... .-.....+. -.+.++.+. ....+.+++|++|++|.+-...-...+........
T Consensus 613 ~GyiKRi~l~~~~~~~r-----~G~~~ikLk-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~-- 684 (805)
T PRK05560 613 NGTVKKTSLSEFSNIRS-----NGIIAINLD-EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRG-- 684 (805)
T ss_pred CCEEEEEEhHHhhhccc-----CCceeeccC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCccc--
Confidence 99766443222110000 000111111 122444443 34457899999999999876654444432222111
Q ss_pred cceEecccCCceeEEEecCC---ceEEEEEcCCcEEEEec
Q 014529 167 IPTKVECLSGIFTKQAALGF---EQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 167 ~p~~i~~~~~~~i~~i~~G~---~~~~~lt~~g~v~~~G~ 203 (423)
+..-++++|+.+.+-. .+.+++|+.|.+.-.-.
T Consensus 685 ----i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l 720 (805)
T PRK05560 685 ----IKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPV 720 (805)
T ss_pred ----ccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEH
Confidence 1112456676665432 25778888887766543
No 39
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=69.18 E-value=1.6e+02 Score=32.51 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=72.3
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccce--eeC-c-cCCCceEEEEcCCc-----ceEE
Q 014529 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV--VCS-A-FEKHSLKALACGGA-----HTLF 85 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~--~~~-~-~~~~~i~~i~~g~~-----~~~~ 85 (423)
++|....+..+.++..++.-++.|++|.-=.. .+..+.-...-.|. .++ . +++++|+.+.+-.+ +.++
T Consensus 550 e~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy---~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~ 626 (957)
T PRK13979 550 EGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGI---NIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIF 626 (957)
T ss_pred CCCceEEEEEEcCCCEEEEEECCCeEEEEEee---eCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEE
Confidence 34555556666666666666788888876332 33332211222221 121 1 14677887766432 3688
Q ss_pred EEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC-----ceeEEEecCCcEEEEeCCCCCCCCCC
Q 014529 86 LTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWGKNSNGQLGLG 158 (423)
Q Consensus 86 lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~-----~~~~~lt~~G~vy~~G~n~~gqlg~~ 158 (423)
+|++|.+--.=-..+- ..........+.. .+.++.+.... .+.+++|++|.+..+-.+.-..+|..
T Consensus 627 ~Tk~G~VKrt~L~ef~------~~r~~~~aikL~e-~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~ 697 (957)
T PRK13979 627 ITDSGGIKKTSLDKFV------TNYTKLMALKLKK-GEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRN 697 (957)
T ss_pred EECCCeEEEEehhhcc------ccccceEEEEcCC-CCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCC
Confidence 8999988766433221 1111112222221 23566554422 35899999999888877665555543
No 40
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=66.43 E-value=1.5e+02 Score=31.06 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred ceEEEEcCCc----eeEEEecCCcEEEEe
Q 014529 124 EVVQISTGYH----HSSAITVDGELYMWG 148 (423)
Q Consensus 124 ~i~~i~~G~~----~~~~lt~~G~vy~~G 148 (423)
.+..|+||.. .+++|+..|.|.-+-
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeec
Confidence 6888999988 889999999997664
No 41
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=64.70 E-value=20 Score=19.93 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=21.3
Q ss_pred CceeEEEecCCceEEEEEcCCcEEEE
Q 014529 176 GIFTKQAALGFEQSVAVTGGGKVLSW 201 (423)
Q Consensus 176 ~~~i~~i~~G~~~~~~lt~~g~v~~~ 201 (423)
++.|+.|++|.....+.|+.+-|-.|
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEec
Confidence 35799999999999999998866543
No 42
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=2.6e+02 Score=31.51 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=34.2
Q ss_pred EEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC-----CceeEEEecCCcEEEEeCC
Q 014529 84 LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGELYMWGKN 150 (423)
Q Consensus 84 ~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G-----~~~~~~lt~~G~vy~~G~n 150 (423)
+=+|-|.+||+|-.+..+++-.-+..+.....+ ..++..+| =.|.++|.+-=+|+..|-.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V-------~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKV-------GLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheee-------eeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 447889999999988755543221111111111 11111111 2688899988889988843
No 43
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=63.48 E-value=1.1e+02 Score=27.46 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=53.9
Q ss_pred eeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCC--cceEEEEcCCcEEEEecCCCCcccC
Q 014529 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGI 105 (423)
Q Consensus 28 ~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~--~~~~~lt~~G~v~~wG~n~~gqlg~ 105 (423)
..|.-+.++||.+-.|--.. + .-++.+... ..|..|..-. .+-+.-+.+|+|++|--...
T Consensus 95 grWMyTgseDgt~kIWdlR~---~--------~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~----- 156 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRS---L--------SCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN----- 156 (311)
T ss_pred CeEEEecCCCceEEEEeccC---c--------ccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCC-----
Confidence 34555566777777775443 1 111222211 2344555443 34455577899999964221
Q ss_pred CCCCCccccceEeccCCCceEEEEcCCc--eeEEEecCCcEEEEeCC
Q 014529 106 SENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKN 150 (423)
Q Consensus 106 ~~~~~~~~~p~~~~~l~~~i~~i~~G~~--~~~~lt~~G~vy~~G~n 150 (423)
...-.+++.-...|.+++.... ..++.++.|++|+|-.-
T Consensus 157 ------~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 157 ------SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred ------ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 1112222322346777666544 45678889999999753
No 44
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.23 E-value=1.2e+02 Score=29.08 Aligned_cols=55 Identities=20% Similarity=0.121 Sum_probs=28.9
Q ss_pred ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC-CcceEEeeCCeeEEEEcCCCEEEE
Q 014529 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEVVCGGYHTCVLTSGGELYTW 312 (423)
Q Consensus 248 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~-~i~~i~~G~~~~~~lt~~g~vy~w 312 (423)
...++.+.+|.||++-... +++-. -.++.... ...-+.. ..+.++.+.||+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~~--------~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFVA--------RLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEEE--------EEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 4566678888898884322 11100 00000100 1112333 3567888999999986
No 45
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=62.20 E-value=2.3e+02 Score=30.58 Aligned_cols=167 Identities=13% Similarity=-0.013 Sum_probs=84.2
Q ss_pred EcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC-----CceEEEEEcCCcEEEEec
Q 014529 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 129 ~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G-----~~~~~~lt~~g~v~~~G~ 203 (423)
+....+.+++|+.|++|..-...-...+...... +....+...++++|+.+.+- ....+++|++|.+--.-.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~---~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l 619 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK---PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSL 619 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc---CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEh
Confidence 4466678999999999998544333322211111 11122333456677776652 235788899988776543
Q ss_pred CCCCccCCCCCCccccccccccccccee-eeccCCccEEEEe--eCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCC
Q 014529 204 GGSGRLGHGQESSILGFLRSTSEYTPRL-IKELEGVKVKIAA--AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280 (423)
Q Consensus 204 n~~gqlg~~~~~~~~~~~~~~~~~~p~~-i~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 280 (423)
+.+....+ .... +..-.+..++.+. ......+++|++|+++.+-...-...+...... .
T Consensus 620 ~~~~~~~r----------------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv-~- 681 (800)
T TIGR01063 620 TEFSNIRS----------------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV-R- 681 (800)
T ss_pred HHhhhhcc----------------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe-e-
Confidence 33211000 0000 0001122344332 233468889999999988654433333221111 0
Q ss_pred CeeecCCCCcceEEee--CCeeEEEEcCCCEEEEeCCC
Q 014529 281 PSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 281 p~~v~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~ 316 (423)
...+..-+.|+.+..- ..+.+++|++|.+.-.-..+
T Consensus 682 ~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 682 GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHH
Confidence 0112222345544432 23567788888777655443
No 46
>PHA02713 hypothetical protein; Provisional
Probab=61.68 E-value=2e+02 Score=29.58 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=12.7
Q ss_pred CCceEEEEEcCCcEEEEecC
Q 014529 185 GFEQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 185 G~~~~~~lt~~g~v~~~G~n 204 (423)
...+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33333444557899999864
No 47
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=55.83 E-value=88 Score=28.02 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=41.8
Q ss_pred CcceEEeeCCeeEEEEcCCCEEEEeCCCCCC-CCCCCCCCcCCCccccCCCCCCCeEEEecC-CceeEEEE--CCcEEEE
Q 014529 289 YSEEVVCGGYHTCVLTSGGELYTWGSNENGC-LGIGSIDVLHSPERVQGPFSESPVDQVSCG-WKHTAAIS--EGKILTW 364 (423)
Q Consensus 289 ~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gq-lG~~~~~~~~~p~~v~~~~~~~~i~~i~~G-~~h~~~l~--~g~vy~w 364 (423)
.|-.++.-+.| ++.--||.||.|-.|+.-. ++....-....|.++. .+.-..|-.+..- ...++++. |+.+|+|
T Consensus 64 piy~~~f~d~~-Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 64 PIYYLAFHDDF-LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred Ceeeeeeehhh-eeeccCceEEEeeehhhhhhccchhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 45566554444 3344569999999998765 5444444444555553 1222234344333 34455555 6777777
Q ss_pred ec
Q 014529 365 GW 366 (423)
Q Consensus 365 G~ 366 (423)
--
T Consensus 142 dl 143 (325)
T KOG0649|consen 142 DL 143 (325)
T ss_pred Ee
Confidence 64
No 48
>PRK05560 DNA gyrase subunit A; Validated
Probab=55.70 E-value=3e+02 Score=29.80 Aligned_cols=213 Identities=13% Similarity=-0.023 Sum_probs=103.3
Q ss_pred EEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCC-----ceEEEEEcCCcEEEEe
Q 014529 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWG 202 (423)
Q Consensus 128 i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-----~~~~~lt~~g~v~~~G 202 (423)
.+......+++|+.|++|..-...-...+...... +....+...++++|+.+.+-. ...+++|++|.+--.-
T Consensus 544 ~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~---~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 544 VASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGR---PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred EecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCe---EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Confidence 34466678999999999998765443332211111 111223334567788777644 3578889999877654
Q ss_pred cCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEee--CCceeEEEecCCCEEEEecCCCCccCcCCCCCCCC
Q 014529 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280 (423)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 280 (423)
...+-...++ -...+..-.+..++.+.. .....+++|++|++|.+-...-...+..... ...
T Consensus 621 l~~~~~~~r~---------------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~G-v~~ 684 (805)
T PRK05560 621 LSEFSNIRSN---------------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARG-VRG 684 (805)
T ss_pred hHHhhhcccC---------------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCC-ccc
Confidence 3322111000 000011112234443333 3346888999999998854443222221110 010
Q ss_pred CeeecCCCCcceEEeeC---CeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCC-C-CCCeEEE--ecCCcee
Q 014529 281 PSLISKLPYSEEVVCGG---YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF-S-ESPVDQV--SCGWKHT 353 (423)
Q Consensus 281 p~~v~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~-~-~~~i~~i--~~G~~h~ 353 (423)
..+..-+.|..+..-. .+.+++|+.|.+.-.-.+++-....+.. -.... .+ . +..++.+ ..+.+..
T Consensus 685 -i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k-----G~~~l-kl~~~~d~lv~v~~v~~~~~v 757 (805)
T PRK05560 685 -IKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK-----GVITI-KITEKNGKLVGALPVDDDDEI 757 (805)
T ss_pred -ccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC-----cEEee-eccCCCCeEEEEEEecCCCeE
Confidence 1112222455544332 2567788888776654433221111000 00000 01 1 1233332 2344556
Q ss_pred EEEE-CCcEEEEec
Q 014529 354 AAIS-EGKILTWGW 366 (423)
Q Consensus 354 ~~l~-~g~vy~wG~ 366 (423)
++++ +|++.-+-.
T Consensus 758 ~i~T~~G~~lrf~~ 771 (805)
T PRK05560 758 MLITDSGKLIRTRV 771 (805)
T ss_pred EEEecCCeEEEEEH
Confidence 7777 888877655
No 49
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=53.13 E-value=42 Score=31.74 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=74.8
Q ss_pred EEecCCceEEEEEcCCc-EEEEecCCCCccCCCCCCcccccccccccccce-eeeccCCccEEEEeeCCceeEEEecCCC
Q 014529 181 QAALGFEQSVAVTGGGK-VLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR-LIKELEGVKVKIAAAGFLHSACIDENGR 258 (423)
Q Consensus 181 ~i~~G~~~~~~lt~~g~-v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~g~ 258 (423)
.|.+|...-++++.+|+ +|+-. -.+.+..++............ ...|. +|..+.+.. ....-..+.+.++.+|+
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~-T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R--~~~~~~~~~~~ls~dgk 107 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAE-TFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPR--AQVVPYKNMFALSADGK 107 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEE-EEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B----BS--GGGEEE-TTSS
T ss_pred EeecccCCceeECCCCCEEEEEE-EEEeccccccceeEEEEEecC-cCcccceEecCCcch--heecccccceEEccCCc
Confidence 46778888888888885 45432 223344444433222211111 11111 122222112 22334667788888877
Q ss_pred -EEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCC
Q 014529 259 -VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGP 337 (423)
Q Consensus 259 -v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 337 (423)
+|.+-.....-...-+......-..++.....--.-.|......+-.||.+........|+.- ...+++..+
T Consensus 108 ~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-------~~~t~~F~~ 180 (342)
T PF06433_consen 108 FLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-------QKSTKVFDP 180 (342)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-------EEEEEESST
T ss_pred EEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-------EeeccccCC
Confidence 555422110000000000000011112222222233455556677788888887776655542 111222222
Q ss_pred CCCCCeE---EEecCCceeEEEE-CCcEEEEec
Q 014529 338 FSESPVD---QVSCGWKHTAAIS-EGKILTWGW 366 (423)
Q Consensus 338 ~~~~~i~---~i~~G~~h~~~l~-~g~vy~wG~ 366 (423)
.++.+. .......+.+.++ +|+||.--.
T Consensus 181 -~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 181 -DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp -TTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred -CCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 222222 1234556777788 999998554
No 50
>PHA03098 kelch-like protein; Provisional
Probab=52.46 E-value=2.7e+02 Score=28.26 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=10.8
Q ss_pred EEecCCcEEEEeCCC
Q 014529 137 AITVDGELYMWGKNS 151 (423)
Q Consensus 137 ~lt~~G~vy~~G~n~ 151 (423)
+..-+|+||++|...
T Consensus 338 ~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 338 VTVFNNRIYVIGGIY 352 (534)
T ss_pred EEEECCEEEEEeCCC
Confidence 344578999999653
No 51
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=51.80 E-value=1.2e+02 Score=31.30 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=15.5
Q ss_pred EeeCCceeEEEecCCCEEEEec
Q 014529 243 AAAGFLHSACIDENGRVYIFGD 264 (423)
Q Consensus 243 i~~g~~~~~~lt~~g~v~~~G~ 264 (423)
+.....+.-+...++++|+-|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 3445555566677899999886
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=51.54 E-value=1.8e+02 Score=26.75 Aligned_cols=139 Identities=19% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC---CceeEEEecCCcEEEEeCC-CCCC
Q 014529 79 GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGKN-SNGQ 154 (423)
Q Consensus 79 g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G---~~~~~~lt~~G~vy~~G~n-~~gq 154 (423)
+.-|-++...||.||.-+... +.+|.-+.. ..+++.+..| .-|.+++..||..|.+-.. ..+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP~------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R 128 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDPA------------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGR 128 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCCC------------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEE
Confidence 456778888999999866532 233332111 1134444333 3477888888888887543 2222
Q ss_pred CCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCC-CCccCCCCCCcccccccccccccceeee
Q 014529 155 LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG-SGRLGHGQESSILGFLRSTSEYTPRLIK 233 (423)
Q Consensus 155 lg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~-~gqlg~~~~~~~~~~~~~~~~~~p~~i~ 233 (423)
++..+-.....+.| .+.+-+.-.+.+++..|.||..|.+- ||+|-.... .+.
T Consensus 129 ~dpkt~evt~f~lp-----------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~----------------~i~ 181 (353)
T COG4257 129 LDPKTLEVTRFPLP-----------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN----------------VIS 181 (353)
T ss_pred ecCcccceEEeecc-----------cccCCCcccceeeCCCccEEEeeccccceecCcccC----------------cee
Confidence 22111111001111 33444555688899999999998742 232221110 000
Q ss_pred ccCCccEEEEeeCCceeEEEecCCCEEEE
Q 014529 234 ELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (423)
Q Consensus 234 ~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 262 (423)
.+ -.=..+.-+.++.|.+|+||.-
T Consensus 182 vf-----paPqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 182 VF-----PAPQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ee-----ccCCCCCCcceEECCCCcEEEE
Confidence 00 0112345567889999999986
No 53
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=50.85 E-value=47 Score=30.36 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=71.8
Q ss_pred EEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC---CcceEEEEcCCcEEEEecC-CCCcccC
Q 014529 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCVYATGLN-DFGQLGI 105 (423)
Q Consensus 30 ~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g---~~~~~~lt~~G~v~~wG~n-~~gqlg~ 105 (423)
+......||.||.=+.+ .|.+|+= .|.. -+++.+..| .-|.+++..||..|++-.. ..++++.
T Consensus 65 ~dvapapdG~VWft~qg-~gaiGhL------dP~t------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dp 131 (353)
T COG4257 65 FDVAPAPDGAVWFTAQG-TGAIGHL------DPAT------GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDP 131 (353)
T ss_pred cccccCCCCceEEecCc-cccceec------CCCC------CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecC
Confidence 34455578888875443 2344432 1211 123343332 4577888888888887543 2222221
Q ss_pred CCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCC-CCCCCCCCCCCcccccceEecccCCceeEEEec
Q 014529 106 SENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS-NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184 (423)
Q Consensus 106 ~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~-~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~ 184 (423)
. +.+....|.+ .+..-+.-.+++++..|+||..|.+- +|.|.......+..+.| .-
T Consensus 132 k-t~evt~f~lp--------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------qG 188 (353)
T COG4257 132 K-TLEVTRFPLP--------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------QG 188 (353)
T ss_pred c-ccceEEeecc--------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------------CC
Confidence 1 1111111221 23344566788999999999988743 33333222221111111 12
Q ss_pred CCceEEEEEcCCcEEEE
Q 014529 185 GFEQSVAVTGGGKVLSW 201 (423)
Q Consensus 185 G~~~~~~lt~~g~v~~~ 201 (423)
+.-..++.|-+|+||.-
T Consensus 189 ~gpyGi~atpdGsvwya 205 (353)
T COG4257 189 GGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCcceEECCCCcEEEE
Confidence 34567899999999976
No 54
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=50.21 E-value=3.9e+02 Score=29.53 Aligned_cols=132 Identities=12% Similarity=-0.043 Sum_probs=69.7
Q ss_pred CceEEE--EcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceE-eccCCCceEEEEcCC-----ceeEEEecCC
Q 014529 71 HSLKAL--ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLR-ISGLKKEVVQISTGY-----HHSSAITVDG 142 (423)
Q Consensus 71 ~~i~~i--~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~-~~~l~~~i~~i~~G~-----~~~~~lt~~G 142 (423)
..+.++ +...++.+++|+.|++|.-=...-..............-.. +..-+++|+.+.+-. .+.+++|++|
T Consensus 552 D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G 631 (957)
T PRK13979 552 DFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSG 631 (957)
T ss_pred CceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCC
Confidence 345544 34566788999999999865432222111111111111110 110145677766643 2468899999
Q ss_pred cEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCC-----ceEEEEEcCCcEEEEecCCCCccCC
Q 014529 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGH 211 (423)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-----~~~~~lt~~g~v~~~G~n~~gqlg~ 211 (423)
.+--.-...+-.. . ..-.-+..-++..++.+.... .+.+++|++|.+..|-.+.--.+|+
T Consensus 632 ~VKrt~L~ef~~~------r---~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 632 GIKKTSLDKFVTN------Y---TKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred eEEEEehhhcccc------c---cceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 9887654433210 0 011112222344565554332 3578999999998887766555555
No 55
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=48.28 E-value=2.6e+02 Score=26.89 Aligned_cols=18 Identities=17% Similarity=0.090 Sum_probs=13.0
Q ss_pred ceEEEEEcCCcEEEEecC
Q 014529 187 EQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 187 ~~~~~lt~~g~v~~~G~n 204 (423)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 356555468899999864
No 56
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.01 E-value=4e+02 Score=29.94 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=61.2
Q ss_pred eeeEEeeccCCcEEEEeEcCCCCCcCCC-CCCC--cccceeeCccCCCceEEEE-cCCcceEE-EEcCCcEEEEecCCCC
Q 014529 27 CKRWISSTLQRRFAALWGNGDYGRLGLG-SLES--RWRPVVCSAFEKHSLKALA-CGGAHTLF-LTETGCVYATGLNDFG 101 (423)
Q Consensus 27 ~~~~~~~~~~~g~v~~wG~n~~g~lG~~-~~~~--~~~p~~~~~~~~~~i~~i~-~g~~~~~~-lt~~G~v~~wG~n~~g 101 (423)
+.++|++.+.||.|-+|-.-+ ..|.+ .... ++.| ++.++.+|. |+..+.++ =+.||.|-+.+-+...
T Consensus 1060 ~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys~------~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYSP------EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred CCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEec------cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccc
Confidence 449999999999999997655 34442 1111 2222 344555554 33333333 2789999998876531
Q ss_pred cccCCCCCCccccceEeccCCC--ceEEEEcC----Cc-eeEEEecCCcEEEEeCC
Q 014529 102 QLGISENIGYSLEPLRISGLKK--EVVQISTG----YH-HSSAITVDGELYMWGKN 150 (423)
Q Consensus 102 qlg~~~~~~~~~~p~~~~~l~~--~i~~i~~G----~~-~~~~lt~~G~vy~~G~n 150 (423)
.......-.+++.+.+ .++++-+- .+ -.++.|..+++-.|+.-
T Consensus 1132 ------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1132 ------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred ------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 1111122223332222 55555431 22 35677888899998753
No 57
>PLN02153 epithiospecifier protein
Probab=46.79 E-value=2.6e+02 Score=26.41 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=11.8
Q ss_pred eEEEEEcCCcEEEEecC
Q 014529 188 QSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 188 ~~~~lt~~g~v~~~G~n 204 (423)
+++.+..++++|.||--
T Consensus 307 ~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 307 TTATVYGKNGLLMHGGK 323 (341)
T ss_pred cccccCCcceEEEEcCc
Confidence 34555667789999853
No 58
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.30 E-value=4.8e+02 Score=28.83 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=35.0
Q ss_pred eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCC
Q 014529 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315 (423)
Q Consensus 249 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n 315 (423)
..+.|+++|++|+ |. .++ ..++.++.....|.++.|.+..+...=.+
T Consensus 593 ~~~GLs~~~~Ly~---n~---------------~~l--a~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYA---NS---------------RLL--ASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEE---CC---------------EEE--ecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 6788899999996 11 111 13678888889999999998888887766
No 59
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=43.65 E-value=24 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.2
Q ss_pred cceEEEEcCCcEEEEecC
Q 014529 81 AHTLFLTETGCVYATGLN 98 (423)
Q Consensus 81 ~~~~~lt~~G~v~~wG~n 98 (423)
.+.++++.+|++|+.|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 357899999999999964
No 60
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=42.52 E-value=40 Score=31.41 Aligned_cols=66 Identities=8% Similarity=0.115 Sum_probs=45.1
Q ss_pred cceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcce--EEEEcCCcEEEEec
Q 014529 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHT--LFLTETGCVYATGL 97 (423)
Q Consensus 24 ~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~--~~lt~~G~v~~wG~ 97 (423)
+.-++.++.+....|+||+|---. .++...++......+..|+|.+...+.+ ++++++|.||-|-+
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 334566777778899999996432 1333556666666777899988765554 55677888988854
No 61
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=40.26 E-value=3.1e+02 Score=25.55 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=12.4
Q ss_pred ceeEEEecCCcEEEEeCC
Q 014529 133 HHSSAITVDGELYMWGKN 150 (423)
Q Consensus 133 ~~~~~lt~~G~vy~~G~n 150 (423)
.+.++..-+++||++|..
T Consensus 163 ~~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGG 180 (323)
T ss_pred CcceEEEECCEEEEEcCC
Confidence 344445567899999964
No 62
>PLN02153 epithiospecifier protein
Probab=39.63 E-value=3.3e+02 Score=25.65 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=12.0
Q ss_pred ceEEEEEcCCcEEEEecC
Q 014529 187 EQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 187 ~~~~~lt~~g~v~~~G~n 204 (423)
.|++++ .++++|++|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566655 46799999864
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.61 E-value=3.7e+02 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=19.0
Q ss_pred cEEEEeeCCceeEEE--ecCCCEEEEec
Q 014529 239 KVKIAAAGFLHSACI--DENGRVYIFGD 264 (423)
Q Consensus 239 ~i~~i~~g~~~~~~l--t~~g~v~~~G~ 264 (423)
-|..-..|.+..++. .+|++||.|-.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEc
Confidence 466677777756665 68999999954
No 64
>PHA03098 kelch-like protein; Provisional
Probab=39.28 E-value=4.2e+02 Score=26.79 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=10.3
Q ss_pred EEecCCcEEEEeCC
Q 014529 137 AITVDGELYMWGKN 150 (423)
Q Consensus 137 ~lt~~G~vy~~G~n 150 (423)
+..-+++||++|..
T Consensus 385 ~~~~~~~iYv~GG~ 398 (534)
T PHA03098 385 VVNVNNLIYVIGGI 398 (534)
T ss_pred EEEECCEEEEECCc
Confidence 34557899999863
No 65
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.62 E-value=5.5e+02 Score=29.11 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=24.1
Q ss_pred CcceEEeeCCeeEE--EEcCCCEEEEeCCCCCCCC
Q 014529 289 YSEEVVCGGYHTCV--LTSGGELYTWGSNENGCLG 321 (423)
Q Consensus 289 ~i~~i~~G~~~~~~--lt~~g~vy~wG~n~~gqlG 321 (423)
.|.+|+......+. +++.|.+-+|-....|+-+
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 69999998876654 6778888777766655544
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.56 E-value=3.3e+02 Score=26.67 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=38.8
Q ss_pred cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEE--ecCCcEEEEeC
Q 014529 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAI--TVDGELYMWGK 149 (423)
Q Consensus 81 ~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~l--t~~G~vy~~G~ 149 (423)
.+++++..||-+|.-|.-+ +++-+-+..+.. .-..++.-..+|+.|+.+.+-..+. .+|+.|..|--
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 5778888899888888632 333222111111 1112222223899999887654433 45788999974
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=37.37 E-value=6.6e+02 Score=28.44 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=78.4
Q ss_pred eeEEEecCCce-EEEEE--cCCcEEEEecCCCCccCCC-CCCcccccccccccccceeeeccCCccEEEE-eeCCceeEE
Q 014529 178 FTKQAALGFEQ-SVAVT--GGGKVLSWGAGGSGRLGHG-QESSILGFLRSTSEYTPRLIKELEGVKVKIA-AAGFLHSAC 252 (423)
Q Consensus 178 ~i~~i~~G~~~-~~~lt--~~g~v~~~G~n~~gqlg~~-~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i-~~g~~~~~~ 252 (423)
.+.+++....| +++++ +||.|-.|-.... .|.+ ... ....+ .+....+..+ .|++.+.+|
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~r-------S~lty------s~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSAR-------SELTY------SPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceee-------eeEEE------eccCCceEEEEeccCCCeEE
Confidence 46688888888 67765 7899999954322 2221 110 11111 1122233333 344444444
Q ss_pred E-ecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC---CcceEEe-----eCCeeEEEEcCCCEEEEeCCCCCCCCCC
Q 014529 253 I-DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP---YSEEVVC-----GGYHTCVLTSGGELYTWGSNENGCLGIG 323 (423)
Q Consensus 253 l-t~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~---~i~~i~~-----G~~~~~~lt~~g~vy~wG~n~~gqlG~~ 323 (423)
+ ++||.|...+-+.+.+ ........+++... .++++.+ ++.-.++.|..+.+-.|+.....
T Consensus 1115 v~t~DG~v~~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~----- 1184 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH----- 1184 (1431)
T ss_pred EEcCCCeEEEEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh-----
Confidence 4 7889888887655411 11111222222222 2333332 12123557888889999855421
Q ss_pred CCCCcCCCccccCCCCCCCeEEEecCCceeEEE--E-CCcEEEEec
Q 014529 324 SIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI--S-EGKILTWGW 366 (423)
Q Consensus 324 ~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l--~-~g~vy~wG~ 366 (423)
.--.++..+...-|+.++.......++ + .|.+-+|--
T Consensus 1185 ------~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1185 ------DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred ------hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEe
Confidence 112222233444566665554444333 2 677777764
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=37.09 E-value=1.9e+02 Score=28.19 Aligned_cols=66 Identities=15% Similarity=0.313 Sum_probs=42.7
Q ss_pred CeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE---CCcEEEEec
Q 014529 298 YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS---EGKILTWGW 366 (423)
Q Consensus 298 ~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~---~g~vy~wG~ 366 (423)
+++.++--||-+|+.|.-+ +++-.=+.++...-.+++ -....|+.|+.+++-....+ |+.|.+|--
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFP--GHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCC--CCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 5777788888888888653 444333333333223332 24568999999988875554 677999975
No 69
>PHA02790 Kelch-like protein; Provisional
Probab=37.05 E-value=4.4e+02 Score=26.37 Aligned_cols=14 Identities=21% Similarity=0.499 Sum_probs=10.6
Q ss_pred EEecCCcEEEEeCC
Q 014529 137 AITVDGELYMWGKN 150 (423)
Q Consensus 137 ~lt~~G~vy~~G~n 150 (423)
+..-+|+||+.|..
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 44568999999964
No 70
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=36.30 E-value=1.2e+02 Score=27.33 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=39.7
Q ss_pred EEcC-CcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCC
Q 014529 76 LACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (423)
Q Consensus 76 i~~g-~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (423)
++.+ ++-+..+..||+|++.|-....-.-.-+.......+..++.+..--........-.+.|..+|+||.++.+.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 5555 455788889999999985431100000000011112222222211112223445578899999999998764
No 71
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=34.60 E-value=4.5e+02 Score=25.73 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=18.9
Q ss_pred ceEEEEcCCcceEEEEcCCcEEEEe
Q 014529 72 SLKALACGGAHTLFLTETGCVYATG 96 (423)
Q Consensus 72 ~i~~i~~g~~~~~~lt~~G~v~~wG 96 (423)
+|-.+..+....++||.++++|.-=
T Consensus 129 ~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 129 RIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred cccccccCCCCEEEECCCCeEEEEe
Confidence 3444566767789999999999873
No 72
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=32.78 E-value=1.8e+02 Score=27.99 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=41.0
Q ss_pred EEEcCCcc---eEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEe
Q 014529 75 ALACGGAH---TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (423)
Q Consensus 75 ~i~~g~~~---~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (423)
.+.+++.+ .+++..+|++..|-.+.- ..++.-...+.+|..-....+|++..|+||.+.
T Consensus 164 ~~~~~~~~~~~vl~i~~~g~l~~w~~~~W---------------t~l~~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 164 KVKEGDNHRDGVLGIGRDGKINYWDGNVL---------------KALKQMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EeecCCCcceEEEEEeecCcEeeecCCee---------------eEccCCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34556664 677778888988863221 111222347889999888899999999999986
No 73
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=32.65 E-value=46 Score=21.10 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=12.4
Q ss_pred ceeEEEECCcEEEEec
Q 014529 351 KHTAAISEGKILTWGW 366 (423)
Q Consensus 351 ~h~~~l~~g~vy~wG~ 366 (423)
.|+++.-++++|+||-
T Consensus 4 ~hs~~~~~~kiyv~GG 19 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGG 19 (49)
T ss_pred ceEEEEECCEEEEECC
Confidence 4666655999999985
No 74
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=31.72 E-value=6.3e+02 Score=27.56 Aligned_cols=106 Identities=10% Similarity=0.141 Sum_probs=48.6
Q ss_pred EEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCc
Q 014529 84 LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK 163 (423)
Q Consensus 84 ~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~ 163 (423)
+-+|.|.+|+.|-.|.....-.- .+...+-..+..+.-+.--...--.|.+++.+.-++|..|-.-..
T Consensus 96 cWiT~dnkLiLWnynn~neyq~i--dd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~---------- 163 (1263)
T COG5308 96 CWITNDNKLILWNYNNSNEYQEI--DDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDT---------- 163 (1263)
T ss_pred eEEEcCCEEEEEecCCCcchhhh--hhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEecc----------
Confidence 56899999999987642210000 000011111110000000111223678888888888888743210
Q ss_pred ccccceEecccCCceeEEEecCCceEEEEE-cCCcEEEEecCC
Q 014529 164 VIPIPTKVECLSGIFTKQAALGFEQSVAVT-GGGKVLSWGAGG 205 (423)
Q Consensus 164 ~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt-~~g~v~~~G~n~ 205 (423)
....+..+. ..++--.-|-+-.++++ ++|++|.-|.++
T Consensus 164 ---~T~Els~fn-Tgl~vsvqGinV~civs~e~GrIFf~g~~d 202 (1263)
T COG5308 164 ---KTGELSLFN-TGLVVSVQGINVRCIVSEEDGRIFFGGEND 202 (1263)
T ss_pred ---ccceeEEEe-cceEEeccCceeEEEEeccCCcEEEecCCC
Confidence 011111111 11221223444455554 459999888775
No 75
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=31.63 E-value=1.2e+02 Score=21.92 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=27.8
Q ss_pred cccceEeccCCCceEEEEcC-CceeEEEecCCcEEEEeCCCCC
Q 014529 112 SLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMWGKNSNG 153 (423)
Q Consensus 112 ~~~p~~~~~l~~~i~~i~~G-~~~~~~lt~~G~vy~~G~n~~g 153 (423)
...|..+. +...=..|+|. ....++|++||.+|.-+--+.|
T Consensus 6 ~t~Pa~i~-~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG 47 (81)
T PF03785_consen 6 VTHPASIN-LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSG 47 (81)
T ss_dssp EE--SEEE-TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTT
T ss_pred Eccccccc-ccccEEEEEecCCCcEEEEecCCEEEEEEEecCc
Confidence 34466666 55567789999 8889999999999997754333
No 76
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=31.33 E-value=70 Score=23.15 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=28.9
Q ss_pred CCCeeecCCCCcceEEee-CCeeEEEEcCCCEEEEeCCCCCCC
Q 014529 279 RRPSLISKLPYSEEVVCG-GYHTCVLTSGGELYTWGSNENGCL 320 (423)
Q Consensus 279 ~~p~~v~~~~~i~~i~~G-~~~~~~lt~~g~vy~wG~n~~gql 320 (423)
..|..+..-..-..|+|. ....++|++||.+|.-+--+.|++
T Consensus 7 t~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 7 THPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp E--SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 345666665666788998 778899999999999886655554
No 77
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=31.17 E-value=54 Score=20.62 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=11.7
Q ss_pred CceEEEEEcCCcEEEEec
Q 014529 186 FEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 186 ~~~~~~lt~~g~v~~~G~ 203 (423)
..|+++...+++||.+|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888887889999984
No 78
>PHA02790 Kelch-like protein; Provisional
Probab=28.90 E-value=3.3e+02 Score=27.29 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=11.0
Q ss_pred EEEEcCCcEEEEecC
Q 014529 84 LFLTETGCVYATGLN 98 (423)
Q Consensus 84 ~~lt~~G~v~~wG~n 98 (423)
.+..-+|+||+.|-.
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 344558999999864
No 79
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.39 E-value=4.6e+02 Score=23.58 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=64.6
Q ss_pred hhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEc--CCcEE
Q 014529 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE--TGCVY 93 (423)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~--~G~v~ 93 (423)
...++.++...--+-|.++..|..+++|--+.- + .-+++..- ..+|-.|..-.+.++++.. |-.+-
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-k----------v~Rr~rgH-~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-K----------VDRRFRGH-LAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccC-e----------eeeecccc-cceeeEEEecCcceEEEeccccceeE
Confidence 334455555555566777888999999987642 1 11111111 1245556665666655543 33455
Q ss_pred EEecCCCCcccCCCCCCccccceEec-cCCCceEEEEcCCceeEEEecCCcEEEEe
Q 014529 94 ATGLNDFGQLGISENIGYSLEPLRIS-GLKKEVVQISTGYHHSSAITVDGELYMWG 148 (423)
Q Consensus 94 ~wG~n~~gqlg~~~~~~~~~~p~~~~-~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (423)
+|-- ....++|+++. ...+.|.+|-......++=+.||++..+-
T Consensus 127 ~wDC-----------RS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 127 LWDC-----------RSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred EEEc-----------ccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 5532 12234566553 23347888888888888888899887653
No 80
>PF13964 Kelch_6: Kelch motif
Probab=26.05 E-value=65 Score=20.39 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=12.3
Q ss_pred ceeEEEECCcEEEEec
Q 014529 351 KHTAAISEGKILTWGW 366 (423)
Q Consensus 351 ~h~~~l~~g~vy~wG~ 366 (423)
.|+++..++++|++|-
T Consensus 4 ~~s~v~~~~~iyv~GG 19 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGG 19 (50)
T ss_pred cCEEEEECCEEEEECC
Confidence 4566555999999996
No 81
>PF13854 Kelch_5: Kelch motif
Probab=24.92 E-value=79 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.1
Q ss_pred CceeEEEECCcEEEEec
Q 014529 350 WKHTAAISEGKILTWGW 366 (423)
Q Consensus 350 ~~h~~~l~~g~vy~wG~ 366 (423)
..|++++.++++|++|-
T Consensus 6 ~~hs~~~~~~~iyi~GG 22 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIFGG 22 (42)
T ss_pred cceEEEEECCEEEEEcC
Confidence 35666666999999985
No 82
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=24.48 E-value=9.3e+02 Score=26.15 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=40.0
Q ss_pred cCCcceEEEEcCCc-EEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcE--EEEeC
Q 014529 78 CGGAHTLFLTETGC-VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGEL--YMWGK 149 (423)
Q Consensus 78 ~g~~~~~~lt~~G~-v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~v--y~~G~ 149 (423)
.++...+.++.+|+ |+++|.+..-.. -........|..+....+.|..|++-..+.+.=++++.| |.++.
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~--~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRK--WKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEE--eecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 34455566666665 455555432111 111111144555554566888999888888888888765 44443
No 83
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=24.03 E-value=2.9e+02 Score=26.65 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=43.0
Q ss_pred eeEEEecCCce---EEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEe
Q 014529 178 FTKQAALGFEQ---SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACID 254 (423)
Q Consensus 178 ~i~~i~~G~~~---~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 254 (423)
.++.+.+++.+ .+++..+|++.-|-.+.-. .++ .....+.+|..-....+|++
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt-----------------------~l~-~~~~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK-----------------------ALK-QMGYHFSDIIVHKGQTYALD 216 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeee-----------------------Ecc-CCCceeeEEEEECCEEEEEc
Confidence 45557777775 6777889999888532111 111 13346888888788889999
Q ss_pred cCCCEEEEe
Q 014529 255 ENGRVYIFG 263 (423)
Q Consensus 255 ~~g~v~~~G 263 (423)
..|+||.+-
T Consensus 217 ~~G~l~~i~ 225 (373)
T PLN03215 217 SIGIVYWIN 225 (373)
T ss_pred CCCeEEEEe
Confidence 999999885
No 84
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=23.89 E-value=1.4e+02 Score=16.37 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=13.2
Q ss_pred eEEEEEcCCcEEEEecC
Q 014529 188 QSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 188 ~~~~lt~~g~v~~~G~n 204 (423)
+.++++.+|++|+.-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 67888899999987543
No 85
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=23.24 E-value=7.1e+02 Score=24.34 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=39.9
Q ss_pred CceEEEEc-CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEe--cccCCceeEEEecCCceEEEEEcCCcEE
Q 014529 123 KEVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV--ECLSGIFTKQAALGFEQSVAVTGGGKVL 199 (423)
Q Consensus 123 ~~i~~i~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i--~~~~~~~i~~i~~G~~~~~~lt~~g~v~ 199 (423)
++|+.+.- -..+.++|.++|.++..- -+|.. . ...+..+ ....+.++-.+..+.+=.++||.++++|
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~---~-----fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF---Q-----FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce---e-----echhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 47777764 456788999999988752 22322 0 0111111 1112223333445555678899999999
Q ss_pred EE
Q 014529 200 SW 201 (423)
Q Consensus 200 ~~ 201 (423)
.-
T Consensus 151 ~v 152 (410)
T PF04841_consen 151 VV 152 (410)
T ss_pred EE
Confidence 87
No 86
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=23.11 E-value=6.1e+02 Score=23.54 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=11.8
Q ss_pred eEEEEcCCCEEEEeCCC
Q 014529 300 TCVLTSGGELYTWGSNE 316 (423)
Q Consensus 300 ~~~lt~~g~vy~wG~n~ 316 (423)
+.+...++++|..|-.+
T Consensus 217 ~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 217 ASIKINESLLLCIGGFN 233 (323)
T ss_pred eEEEECCCEEEEECCcC
Confidence 33445678999999654
No 87
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=23.08 E-value=6.5e+02 Score=23.87 Aligned_cols=20 Identities=20% Similarity=-0.001 Sum_probs=14.6
Q ss_pred CCeeEEEEcCCCEEEEeCCC
Q 014529 297 GYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~ 316 (423)
..+.++.+.+|.||++-..+
T Consensus 320 g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC
Confidence 45677778899999986543
No 88
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=21.50 E-value=2.2e+02 Score=26.73 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=34.8
Q ss_pred EEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCcee--EEEecCCCEEEEe
Q 014529 191 AVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHS--ACIDENGRVYIFG 263 (423)
Q Consensus 191 ~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~--~~lt~~g~v~~~G 263 (423)
+....|+||+|-..+. .+...++.........|++.+....-+ +++.+++.||.|-
T Consensus 324 ~gnq~g~v~vwdL~~~-----------------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNN-----------------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hccCCCcEEEEECCCC-----------------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3456789999965322 111334444445556788877666544 4558899999984
No 89
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.46 E-value=1.4e+02 Score=15.75 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=10.6
Q ss_pred ceEEEEcCCcEEEEe
Q 014529 82 HTLFLTETGCVYATG 96 (423)
Q Consensus 82 ~~~~lt~~G~v~~wG 96 (423)
.+++.+++|+||+--
T Consensus 8 ~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGT 22 (24)
T ss_dssp EEEEE-TTSCEEEEE
T ss_pred EEEEEcCCcCEEEEe
Confidence 457788899999854
No 90
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=21.14 E-value=4e+02 Score=20.71 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=0.0
Q ss_pred ceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEE
Q 014529 72 SLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYM 146 (423)
Q Consensus 72 ~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~ 146 (423)
+.+++-|-..+.+-+..||.|-.-+... ..........+.. ..|.--++-....+++++.|+||+
T Consensus 1 R~~~Ly~~~~~~L~i~~~g~V~gt~~~~--------~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~ 65 (122)
T PF00167_consen 1 RHVQLYCRTGYFLQINPNGTVDGTGDDN--------SPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYG 65 (122)
T ss_dssp EEEEEEETTSEEEEEETTSBEEEESSTT--------STTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEE
T ss_pred CCEEEEECCCeEEEECCCCeEeCCCCcC--------cceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEcc
No 91
>PLN00181 protein SPA1-RELATED; Provisional
Probab=21.01 E-value=1.1e+03 Score=25.49 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=50.4
Q ss_pred eeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC---CcceEEEEcCCcEEEEecCCCCccc
Q 014529 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCVYATGLNDFGQLG 104 (423)
Q Consensus 28 ~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g---~~~~~~lt~~G~v~~wG~n~~gqlg 104 (423)
..++.+...|+.|..|-.... . ........|.... ....+|..++.. ....+.-..||.|.+|=.... +
T Consensus 495 g~~latgg~D~~I~iwd~~~~--~--~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-~-- 566 (793)
T PLN00181 495 GEFFATAGVNKKIKIFECESI--I--KDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS-Q-- 566 (793)
T ss_pred CCEEEEEeCCCEEEEEECCcc--c--ccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC-e--
Confidence 345666678888888864321 0 0001111221111 112245555432 233344456889999953221 0
Q ss_pred CCCCCCccccceEeccCCCceEEEEcCC---ceeEEEecCCcEEEEeCC
Q 014529 105 ISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYMWGKN 150 (423)
Q Consensus 105 ~~~~~~~~~~p~~~~~l~~~i~~i~~G~---~~~~~lt~~G~vy~~G~n 150 (423)
....+..-...|..++... ...+.-..||.|..|-..
T Consensus 567 ---------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 567 ---------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred ---------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 1111222233677776642 233444558899999654
No 92
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=20.61 E-value=8.5e+02 Score=24.26 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=16.3
Q ss_pred eeeEEeeccCCcEEEEeEcCCCC
Q 014529 27 CKRWISSTLQRRFAALWGNGDYG 49 (423)
Q Consensus 27 ~~~~~~~~~~~g~v~~wG~n~~g 49 (423)
..-.+++...|++|++|-.-+.+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~ 248 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDR 248 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCc
Confidence 34456777889999999765533
No 93
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.28 E-value=6.4e+02 Score=22.71 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=34.6
Q ss_pred CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE--CCcEEEEe
Q 014529 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWG 365 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~--~g~vy~wG 365 (423)
..|.+--.+||.||.|-.-+..|+. ..+ + ...-.|.+++|-..---.++ ...++.|=
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~s-------k~~--~---~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQIS-------KLS--V---VSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeee-------eec--c---CCceeEEeeecccCccceeEecCCceecee
Confidence 4466667899999999976644441 111 1 12224678888765554444 66677763
Done!