BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014530
         (423 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DWA|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 1:
           Structure Prior To Irradiation
 pdb|1DWF|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 2:
           Structure After Irradiation With 9.110e15 PhotonsMM2
 pdb|1DWG|M Chain M, Study On Radiation Damage On A Cryocooled Crystal: Part 3
           Structure After Irradiation With 18.210e15 PhotonsMM2.
 pdb|1DWH|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 4:
           Structure After Irradiation With 27.210e15 PhotonsMM2
 pdb|1DWI|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 5:
           Structure After Irradiation With 54.010e15 PhotonsMM2
 pdb|1DWJ|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Refined
           Part 6: Structure After A Radiation Dose Of 5410e15
           PhotonsMM2
          Length = 499

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 90  KCYGGSISLDKEEFVEMMLLDGCFIVEIIRKNLRQESREDNDPIFKLGWMLPFIARD--- 146
            CY G+ S +        LL    +V++ RKN   +  +   P     W LP+   D   
Sbjct: 211 SCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIG-PTMITRWFLPYNDTDRHS 269

Query: 147 MFLVENQLPFFVLWELFSMTEVT 169
           +   E    FF+ W +  +T  T
Sbjct: 270 IAATERMKEFFLGWFMGPLTNGT 292


>pdb|1MYR|A Chain A, Myrosinase From Sinapis Alba
          Length = 501

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 90  KCYGGSISLDKEEFVEMMLLDGCFIVEIIRKNLRQESREDNDPIFKLGWMLPFIARD--- 146
            CY G+ S +        LL    +V++ RKN   +  +   P     W LP+   D   
Sbjct: 213 SCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIG-PTMITRWFLPYNDTDRHS 271

Query: 147 MFLVENQLPFFVLWELFSMTEVT 169
           +   E    FF+ W +  +T  T
Sbjct: 272 IAATERMKQFFLGWFMGPLTNGT 294


>pdb|1E6Q|M Chain M, Myrosinase From Sinapis Alba With The Bound Transition
           State Analogue Gluco-Tetrazole
 pdb|1E6X|M Chain M, Myrosinase From Sinapis Alba With A Bound Transition State
           Analogue,D-Glucono-1,5-Lactone
 pdb|1E70|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba
 pdb|1E71|M Chain M, Myrosinase From Sinapis Alba With Bound Ascorbate
 pdb|1E72|M Chain M, Myrosinase From Sinapis Alba With Bound
           Gluco-Hydroximolactam And Sulfate Or Ascorbate
 pdb|1E73|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba With Bound
           L-Ascorbate
 pdb|1E6S|M Chain M, Myrosinase From Sinapis Alba With Bound
           Gluco-Hydroximolactam And Sulfate
 pdb|1E4M|M Chain M, Myrosinase From Sinapis Alba
 pdb|1W9B|M Chain M, S. Alba Myrosinase In Complex With Carba-Glucotropaeolin
 pdb|1W9D|M Chain M, S. Alba Myrosinase In Complex With S-Ethyl
           Phenylacetothiohydroximate-O-Sulfate
 pdb|2WXD|M Chain M, A Micromolar O-Sulfated Thiohydroximate Inhibitor Bound To
           Plant Myrosinase
          Length = 501

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 90  KCYGGSISLDKEEFVEMMLLDGCFIVEIIRKNLRQESREDNDPIFKLGWMLPFIARD--- 146
            CY G+ S +        LL    +V++ RKN   +  +   P     W LP+   D   
Sbjct: 213 SCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIG-PTMITRWFLPYNDTDRHS 271

Query: 147 MFLVENQLPFFVLWELFSMTEVT 169
           +   E    FF+ W +  +T  T
Sbjct: 272 IAATERMKEFFLGWFMGPLTNGT 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,886,064
Number of Sequences: 62578
Number of extensions: 479981
Number of successful extensions: 1174
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 3
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)