BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014530
         (423 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
           SV=1
          Length = 476

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 211/430 (49%), Gaps = 40/430 (9%)

Query: 18  IFRVPNQLRKINATAYEPEMLAIGPYHHGKDHLMAFEEHKTRYLQNLLHR-RSLNRSLSD 76
           IFRVP     +N  AY+P++++IGPYH+G+ HL   ++HK R LQ  L   +  +   + 
Sbjct: 48  IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENV 107

Query: 77  YVTTLRALEEKARKCYGGSISLDKEEFVEMMLLDGCFIVE---IIRKNLRQESREDNDPI 133
            V  +  LE+K RK Y   +     + + MM+LDGCFI+    I+  N+        DPI
Sbjct: 108 LVKAVVDLEDKIRKSYSEELKTG-HDLMFMMVLDGCFILMVFLIMSGNIEL----SEDPI 162

Query: 134 FKLGWMLPFIARDMFLVENQLPFFVLWELFSMTEVTNNNQTNYSFFYMILYFFYGILPGK 193
           F + W+L  I  D+ L+ENQ+PFFVL  L+  +++  ++  N   F    +FF   +  +
Sbjct: 163 FSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLNRIAF----HFFKNPIDKE 218

Query: 194 G--YPRVDVYPIEEIKHLVGFIHNNWLPSPTGID---------------AFKINASKNSE 236
           G  + +   Y   + KHL+  I   +LP+ +  D               +  + +  +  
Sbjct: 219 GSYWEKHRNY---KAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKA 275

Query: 237 WKFICCATEIQEAGVKF---QKVEDGLLFDIKFDNGVMKIPTLAIGDTTEAVLRNLIAYE 293
              I  A  ++  G+KF   +  ED +L +++     ++IP L       +   N +A+E
Sbjct: 276 VPLILSAKRLRLQGIKFRLRRSKEDSIL-NVRLKKNKLQIPQLRFDGFISSFFLNCVAFE 334

Query: 294 QFSHDQNSKHILDYVKFLDCLINSSKDAELLRRCG-IIDNWLGDDEVIAGLISRLGDAVV 352
           QF  D +S  I  Y+ F+ CL+N+ +D   LR    II+N  G +  ++     +   VV
Sbjct: 335 QFYTD-SSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVV 393

Query: 353 LS-DQFYYSEVFNKVNLHCSRRVNKWKAKLRHNYFNTPWAIISFLAAAVLLLLTLLQALF 411
              D  Y + VF  VN +  +  N   A  RH +F +PW  +S  A   ++LLT+LQ+  
Sbjct: 394 FEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQSTV 453

Query: 412 AVLSYFQQTQ 421
           A+LSY    +
Sbjct: 454 AILSYLNDKK 463


>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
           GN=At3g02645 PE=3 SV=1
          Length = 529

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 11  LDHSQFSIFRVPNQLRKINATAYEPEMLAIGPYHHGKDHLMAFEEHKTRYLQNLLHRRSL 70
           L+    SIF VP  L   +  +Y P  ++IGPYH  K  L   E +K    + + ++ + 
Sbjct: 38  LEEVTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNS 97

Query: 71  NRSLSDYVTTLRALEEKARKCYGGSISLDKEEFVEMMLLDGCFIVEIIRKNLRQESREDN 130
            R   D V  L+++E K R CY   I  + E  + +M +D  F++E ++       R+  
Sbjct: 98  FR-FHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKI---YSFRKVE 153

Query: 131 DPIFKLGWMLPFIARDMFLVENQLPFFVL 159
             I ++G     I RD+ ++ENQ+P FVL
Sbjct: 154 TLINRVGHNE--ILRDIMMIENQIPLFVL 180



 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 240 ICCATEIQEAGVKFQKVEDGLLFDIKFDN--GVMKIPTLAIGDTTEAVLRNLIAYEQFSH 297
           I   +++ +AGV+F+    G +  + FD+  G   +P + +   TE VLRNL+AYE  ++
Sbjct: 345 IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEA-TN 403

Query: 298 DQNSKHILDYVKFLDCLINSSKDAELLRRCGIIDNWLGDDEVIAGLISRLGDAVVLSDQF 357
                    Y + ++ +I+S +D  LLR  G++ + L  D+  A + + +  +V L+   
Sbjct: 404 TSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVG 463

Query: 358 YYSEVFNKVNLHCSRRVNKWKAK---LRHNYFNTPWAIISF 395
           +  +    VN + + R   WK K   L   Y    W I++F
Sbjct: 464 FLDKTIEDVNRYYTGR---WKVKIGRLVEVYVYGSWQILAF 501


>sp|O84281|NQRC_CHLTR Probable Na(+)-translocating NADH-quinone reductase subunit C
           OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nqrC PE=3
           SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 379 AKLRHNYFNTPWAIISFLAAAVLLLLTLLQALFAVLSYFQQ 419
           +K RH Y N PW II F+    L+  TLL +++ VL+  QQ
Sbjct: 3   SKSRH-YLNQPWYIILFIFVLSLIAGTLLSSVYYVLAPIQQ 42


>sp|Q46Y59|HLDD_CUPPJ ADP-L-glycero-D-manno-heptose-6-epimerase OS=Cupriavidus
           pinatubonensis (strain JMP134 / LMG 1197) GN=hldD PE=3
           SV=1
          Length = 331

 Score = 32.0 bits (71), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 66  HRRSLNRSLSDYVTTLRALEEKARKCYGGSISLDKEEFVEMMLLDGCFIVEIIRKNLRQE 125
           H RS N      V TLRA E+K          L  EE V+  LL+     + +R   +  
Sbjct: 244 HARSFNDVACVVVNTLRAAEDKP--------PLALEELVQEGLLEYLRFPDALRGRYQSF 295

Query: 126 SREDNDPIFKLGWMLPFIA 144
           ++ D+  + + G+  PF+A
Sbjct: 296 TQSDSSRLREAGYTAPFVA 314


>sp|P78970|LAG1_SCHPO Sphingosine N-acyltransferase lag1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=lag1 PE=1 SV=2
          Length = 390

 Score = 32.0 bits (71), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 28/158 (17%)

Query: 126 SREDNDPIFKLGWMLPFIARDMFLVENQL-PFFVLWELFSMTEVTNNNQTNYSFFYMILY 184
            +   D  F + W++ F A  + +++    PF + W + +   +    +  YSFFY + +
Sbjct: 109 GKGPKDACFPIFWVIVFTAFRVIVMDYVFRPFVLNWGVRNRKVIIRFCEQGYSFFYYLCF 168

Query: 185 FFYGILPGKG-------------YPRVDVYPIEEIKHLV--GFIHNNWLPSPTGIDAFKI 229
           +F G+   +              YP+  + P+ +  +L+  GF    WL     I    +
Sbjct: 169 WFLGLYIYRSSNYWSNEEKLFEDYPQYYMSPLFKAYYLIQLGF----WLQQ---ILVLHL 221

Query: 230 NASKNSEWKF-----ICCATEIQEAGVKFQKVEDGLLF 262
              +   W+      + CA  I   G  F +V + +L+
Sbjct: 222 EQRRADHWQMFAHHIVTCALIILSYGFNFLRVGNAILY 259


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,422,943
Number of Sequences: 539616
Number of extensions: 6566685
Number of successful extensions: 20347
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 20335
Number of HSP's gapped (non-prelim): 12
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)