Query 014530
Match_columns 423
No_of_seqs 122 out of 678
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 1E-109 2E-114 849.1 35.9 380 18-405 1-391 (391)
2 PF12911 OppC_N: N-terminal TM 69.0 5.4 0.00012 28.8 2.9 33 382-414 9-41 (56)
3 COG4575 ElaB Uncharacterized c 64.2 6.2 0.00013 32.8 2.6 20 387-407 81-100 (104)
4 PRK10132 hypothetical protein; 57.9 10 0.00022 31.9 2.8 20 387-407 84-103 (108)
5 PRK10404 hypothetical protein; 57.0 11 0.00023 31.4 2.8 66 336-407 32-97 (101)
6 PF07438 DUF1514: Protein of u 55.9 13 0.00028 28.1 2.8 22 390-411 2-23 (66)
7 PHA02103 hypothetical protein 54.0 27 0.00058 29.2 4.6 75 253-331 11-102 (135)
8 PF09069 EF-hand_3: EF-hand; 52.7 30 0.00066 28.1 4.8 53 56-110 3-76 (90)
9 PF14579 HHH_6: Helix-hairpin- 50.7 97 0.0021 24.7 7.5 83 250-338 1-87 (90)
10 PF14770 TMEM18: Transmembrane 48.7 20 0.00044 30.8 3.4 49 364-415 56-104 (123)
11 KOG3110 Riboflavin kinase [Coe 44.1 21 0.00047 31.1 2.7 61 33-93 65-138 (153)
12 PF05957 DUF883: Bacterial pro 36.2 36 0.00079 27.4 2.9 20 387-407 71-90 (94)
13 PF05421 DUF751: Protein of un 35.2 67 0.0014 24.2 3.9 31 384-414 29-59 (61)
14 KOG3942 MIF4G domain-containin 35.1 64 0.0014 32.1 4.8 106 286-397 129-239 (348)
15 PF10961 DUF2763: Protein of u 33.1 61 0.0013 26.4 3.7 30 387-416 13-45 (91)
16 PF15103 G0-G1_switch_2: G0/G1 32.5 39 0.00085 27.9 2.4 25 392-416 28-52 (102)
17 PF04971 Lysis_S: Lysis protei 32.2 73 0.0016 24.5 3.7 33 376-408 19-51 (68)
18 KOG4134 DNA-dependent RNA poly 30.6 34 0.00074 32.4 2.0 45 12-67 21-65 (253)
19 PHA02680 ORF090 IMV phosphoryl 29.3 1.1E+02 0.0024 24.7 4.3 32 388-419 43-74 (91)
20 PF00690 Cation_ATPase_N: Cati 28.5 1.3E+02 0.0028 22.5 4.6 59 335-400 4-68 (69)
21 PF11446 DUF2897: Protein of u 27.4 70 0.0015 23.5 2.8 21 388-408 4-24 (55)
22 PF10777 YlaC: Inner membrane 27.2 1.1E+02 0.0025 27.2 4.5 48 359-410 8-57 (155)
23 PF05767 Pox_A14: Poxvirus vir 27.1 1.3E+02 0.0028 24.4 4.5 32 388-419 42-74 (92)
24 cd00049 MH1 MH1 is a small DNA 24.3 50 0.0011 28.4 1.8 33 15-47 77-118 (121)
25 PF15315 FRG2: Facioscapulohum 20.9 1.1E+02 0.0024 27.7 3.4 34 382-415 136-169 (181)
26 PF04531 Phage_holin_1: Bacter 20.4 1.3E+02 0.0028 23.9 3.4 24 385-408 7-30 (84)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=9.9e-110 Score=849.10 Aligned_cols=380 Identities=47% Similarity=0.783 Sum_probs=338.6
Q ss_pred EeecCchhhccCCCCCCcceeeecccCCCCccccchHHHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHHHHhhhhcC
Q 014530 18 IFRVPNQLRKINATAYEPEMLAIGPYHHGKDHLMAFEEHKTRYLQNLLHRRSLN---RSLSDYVTTLRALEEKARKCYGG 94 (423)
Q Consensus 18 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~~~---~~l~~~~~~i~~~e~~~R~~Y~~ 94 (423)
|||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++| ++ .++++++++|+++|++||+||++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~--~~~~~~~l~~~~~~i~~~e~~~R~~Y~~ 78 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKR--SGAPAESLEDYVEAIRSLEEEARACYAE 78 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999 66 79999999999999999999999
Q ss_pred CCC-CChHHHHHHHHhhhHHHHHHHHHhhccCCCCCCCc-ccccCCchhhHhhhhhhhccCchHHHHHHHHhhccccCCC
Q 014530 95 SIS-LDKEEFVEMMLLDGCFIVEIIRKNLRQESREDNDP-IFKLGWMLPFIARDMFLVENQLPFFVLWELFSMTEVTNNN 172 (423)
Q Consensus 95 ~~~-~~~~ef~~MmllDgcFiLe~l~~~~~~~~~~~~d~-~~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~~~~ 172 (423)
+++ +++++|++||++|||||||+|+.+.. ..+.+|| ++..+|....|++||+|||||||||||++||++..... .
T Consensus 79 ~~~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~-~ 155 (391)
T PF03140_consen 79 DIDDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSK-S 155 (391)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccc-c
Confidence 998 99999999999999999999999875 2456788 88899999999999999999999999999999998333 3
Q ss_pred CCcchHHHHHHHhhcccCCCCCCCCCCCCCCCCCCChhHHHHhhcCCCCCCCc-ccccccC---CCCccccccCHHHHHH
Q 014530 173 QTNYSFFYMILYFFYGILPGKGYPRVDVYPIEEIKHLVGFIHNNWLPSPTGID-AFKINAS---KNSEWKFICCATEIQE 248 (423)
Q Consensus 173 ~~~~~l~~l~~~ff~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~~~~~-~~~~~~~---~~~~~~~~~sAteL~~ 248 (423)
....++.+++.+||....+...... .....+++|||||+|.+++|++.... .+..... .......+||||||++
T Consensus 156 ~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~ 233 (391)
T PF03140_consen 156 DVDESLIDLVLKFFYKHWPSWPPDE--PISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELRE 233 (391)
T ss_pred CccchHHHHHHhHhccccccccccc--cccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHh
Confidence 5678899999999943211111111 35667899999999999999322111 0000000 0123568999999999
Q ss_pred cCcEEEecCCC-CccceEEcCceEEeceEEecCcchHhhhhHHHHHhhhcCCCCcchhhHHHHHHhhhCChHhHHHHHHc
Q 014530 249 AGVKFQKVEDG-LLFDIKFDNGVMKIPTLAIGDTTEAVLRNLIAYEQFSHDQNSKHILDYVKFLDCLINSSKDAELLRRC 327 (423)
Q Consensus 249 aGVkfk~~~~~-~llDV~F~~G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~~~vtsYv~fM~~LI~t~eDV~lL~~k 327 (423)
|||+||++++. +++||+|++|+|+||+|.||++|+++||||||||| |++..+.+|||||.||++||+|++||++|+++
T Consensus 234 aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq-~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~k 312 (391)
T PF03140_consen 234 AGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQ-CHPPTGSYVTSYVFFMDSLINTPEDVELLRRK 312 (391)
T ss_pred CCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHH-HhccCCchHhHHHHHHHHHhCcHhhHHHHHhC
Confidence 99999999876 59999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CccccCCCChHHHHHHHHHhhcCCC-CCCCccHHHHHHHHHHhcCCchHHHHHhhcccccCchhHHHHHHHHHHHHHHH
Q 014530 328 GIIDNWLGDDEVIAGLISRLGDAVV-LSDQFYYSEVFNKVNLHCSRRVNKWKAKLRHNYFNTPWAIISFLAAAVLLLLT 405 (423)
Q Consensus 328 gIi~~~lgsdeeva~lFn~L~~~~~-~~~~~y~~~v~~~l~~~~~~r~~~~~a~l~~~yf~npw~~is~~aA~ill~lt 405 (423)
|||+|++|+||||++|||+||++++ +.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|++|
T Consensus 313 gIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 313 GIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred CeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999 76678999999999999999999999999999999999999999999999997
No 2
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=69.03 E-value=5.4 Score=28.81 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=26.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 014530 382 RHNYFNTPWAIISFLAAAVLLLLTLLQALFAVL 414 (423)
Q Consensus 382 ~~~yf~npw~~is~~aA~ill~lt~~QT~~sv~ 414 (423)
.+++++|+..++|++.-+++++++++..+.+-+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 366778999999999888888888887776544
No 3
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=64.17 E-value=6.2 Score=32.78 Aligned_cols=20 Identities=50% Similarity=0.727 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 014530 387 NTPWAIISFLAAAVLLLLTLL 407 (423)
Q Consensus 387 ~npw~~is~~aA~ill~lt~~ 407 (423)
-|||..|++-|| ++|++.++
T Consensus 81 e~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 81 ENPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred cCCchHHHHHHH-HHHHHHHH
Confidence 399999997654 55555554
No 4
>PRK10132 hypothetical protein; Provisional
Probab=57.86 E-value=10 Score=31.94 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 014530 387 NTPWAIISFLAAAVLLLLTLL 407 (423)
Q Consensus 387 ~npw~~is~~aA~ill~lt~~ 407 (423)
.|||..+++.| .++|++.++
T Consensus 84 ~~Pw~svgiaa-gvG~llG~L 103 (108)
T PRK10132 84 ERPWCSVGTAA-AVGIFIGAL 103 (108)
T ss_pred hCcHHHHHHHH-HHHHHHHHH
Confidence 39999999654 577777765
No 5
>PRK10404 hypothetical protein; Provisional
Probab=57.04 E-value=11 Score=31.37 Aligned_cols=66 Identities=24% Similarity=0.213 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHhcCCchHHHHHhhcccccCchhHHHHHHHHHHHHHHHHH
Q 014530 336 DDEVIAGLISRLGDAVVLSDQFYYSEVFNKVNLHCSRRVNKWKAKLRHNYFNTPWAIISFLAAAVLLLLTLL 407 (423)
Q Consensus 336 sdeeva~lFn~L~~~~~~~~~~y~~~v~~~l~~~~~~r~~~~~a~l~~~yf~npw~~is~~aA~ill~lt~~ 407 (423)
+.+++.++-.++...+.. -...+.+.-+.+.... +..-..-..+.|+ |||..+++. |.++|++.++
T Consensus 32 a~e~~~~lR~r~~~~L~~-ar~~l~~~~~~~~~~~-k~aa~~td~yV~e---~Pw~avGia-agvGlllG~L 97 (101)
T PRK10404 32 ADQKYVELKARAEKALDD-VKKRVSQASDSYYYRA-KQAVYRADDYVHE---KPWQGIGVG-AAVGLVLGLL 97 (101)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHH-HHHHHHHHHHHHh---CcHHHHHHH-HHHHHHHHHH
Confidence 455666666666544431 0111333222222111 1111222344565 999999964 4577777765
No 6
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=55.93 E-value=13 Score=28.08 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 014530 390 WAIISFLAAAVLLLLTLLQALF 411 (423)
Q Consensus 390 w~~is~~aA~ill~lt~~QT~~ 411 (423)
|.++|.+.|+++|++-.+|+--
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999988763
No 7
>PHA02103 hypothetical protein
Probab=53.96 E-value=27 Score=29.16 Aligned_cols=75 Identities=20% Similarity=0.442 Sum_probs=48.4
Q ss_pred EEecCCCCccc--eEE----cCce--EEeceEEecCcchHhhhhHHHHHhhhcCC--CC-------cchhhHHHHHHhhh
Q 014530 253 FQKVEDGLLFD--IKF----DNGV--MKIPTLAIGDTTEAVLRNLIAYEQFSHDQ--NS-------KHILDYVKFLDCLI 315 (423)
Q Consensus 253 fk~~~~~~llD--V~F----~~G~--L~IP~l~id~~T~~llrNLiA~Eq~~~~~--~~-------~~vtsYv~fM~~LI 315 (423)
||+.+.+..+- |.| ++.+ -|||.+..|+...-+.|=.+-+|. |... .+ .++-.|-..+ -
T Consensus 11 fk~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~k-ck~~yp~gkgg~~df~~ipdyyryf---~ 86 (135)
T PHA02103 11 FKPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDK-CKAEYPRGKGGQADFNHIPDYYRYF---G 86 (135)
T ss_pred cCCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHH-HHhhCCCCCCCccccccChHHHHHh---c
Confidence 33444455443 334 4455 589999999999999999999999 9742 21 2444554433 3
Q ss_pred CChHhHHHHHHcCccc
Q 014530 316 NSSKDAELLRRCGIID 331 (423)
Q Consensus 316 ~t~eDV~lL~~kgIi~ 331 (423)
..+|-|++-.+-||=.
T Consensus 87 ee~e~ie~we~ygve~ 102 (135)
T PHA02103 87 EEAEGVELWEEYGVEG 102 (135)
T ss_pred ccchhhhHHHHhCcce
Confidence 4566677777766643
No 8
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=52.74 E-value=30 Score=28.08 Aligned_cols=53 Identities=23% Similarity=0.450 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhccCCC-----CHHHHHHHHH-------------HHHHHHhhhhcC---CCCCChHHHHHHHHhh
Q 014530 56 HKTRYLQNLLHRRSLNR-----SLSDYVTTLR-------------ALEEKARKCYGG---SISLDKEEFVEMMLLD 110 (423)
Q Consensus 56 ~K~~~~~~~l~r~~~~~-----~l~~~~~~i~-------------~~e~~~R~~Y~~---~~~~~~~ef~~MmllD 110 (423)
.|.||+-++++. ++. .+..++..+. ..|..+|.|+.. .-+++.++|+..|..|
T Consensus 3 dKyRylFslisd--~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLISD--SNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHS---TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHHcC--CCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 599999999987 432 3555554443 367789999965 5568889999888765
No 9
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=50.74 E-value=97 Score=24.69 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=57.0
Q ss_pred CcEEEecC-CCCccceEEcC--ceEEeceEEecCcchHhhhhHHHHHhhhcCCCCcchhhHHHHHHhh-hCChHhHHHHH
Q 014530 250 GVKFQKVE-DGLLFDIKFDN--GVMKIPTLAIGDTTEAVLRNLIAYEQFSHDQNSKHILDYVKFLDCL-INSSKDAELLR 325 (423)
Q Consensus 250 GVkfk~~~-~~~llDV~F~~--G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~~~vtsYv~fM~~L-I~t~eDV~lL~ 325 (423)
||++.+.+ ..|-.+-+..+ +.+.+|=-.|..-.+.....+++-=+ ...++|+-.|...+ --+..+++.|.
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~------~g~f~s~~df~~R~~~i~~~~le~Li 74 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE------NGPFKSLEDFIQRLPKINKRQLEALI 74 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH------CSS-SSHHHHHHHS-TS-HHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh------cCCCCCHHHHHHHHhcCCHHHHHHHH
Confidence 77777753 34444666665 79999999999988888887776443 24588999999999 88899999999
Q ss_pred HcCccccCCCChH
Q 014530 326 RCGIIDNWLGDDE 338 (423)
Q Consensus 326 ~kgIi~~~lgsde 338 (423)
+.|.++..-+++.
T Consensus 75 ~aGafd~~~~~~R 87 (90)
T PF14579_consen 75 KAGAFDSFGKSRR 87 (90)
T ss_dssp HTTTTTTCSSCHH
T ss_pred HCCCccccChhhh
Confidence 9999987755443
No 10
>PF14770 TMEM18: Transmembrane protein 18
Probab=48.69 E-value=20 Score=30.81 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHhcCCchHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014530 364 NKVNLHCSRRVNKWKAKLRHNYFNTPWAIISFLAAAVLLLLTLLQALFAVLS 415 (423)
Q Consensus 364 ~~l~~~~~~r~~~~~a~l~~~yf~npw~~is~~aA~ill~lt~~QT~~sv~~ 415 (423)
|.+|++..+.| +..-+++||.+-=.+||++-++=+|+.+++..+..+++
T Consensus 56 E~iN~~~a~nW---~~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l~~ 104 (123)
T PF14770_consen 56 EYINEYAARNW---RSFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWLYQ 104 (123)
T ss_pred HHHHHHHHHHH---HHHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHHHH
Confidence 68899888766 44456799999999999988876666666665555443
No 11
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=44.08 E-value=21 Score=31.09 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=40.2
Q ss_pred CCcceeeec--ccCCCCc---cccchHHHHHHHHHHHHhhc-----cCC---CCHHHHHHHHHHHHHHHhhhhc
Q 014530 33 YEPEMLAIG--PYHHGKD---HLMAFEEHKTRYLQNLLHRR-----SLN---RSLSDYVTTLRALEEKARKCYG 93 (423)
Q Consensus 33 Y~P~~VSIG--PyHhg~~---~L~~mE~~K~~~~~~~l~r~-----~~~---~~l~~~~~~i~~~e~~~R~~Y~ 93 (423)
--|.++||| ||..++. ++..++..|.-+-.+.++-. .+. .++++++++|..-.+.|++.-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 458999999 8877653 34445555554444444332 122 3699999999988888887554
No 12
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=36.18 E-value=36 Score=27.41 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 014530 387 NTPWAIISFLAAAVLLLLTLL 407 (423)
Q Consensus 387 ~npw~~is~~aA~ill~lt~~ 407 (423)
.|||..+++.++ ++|++.++
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 489999887665 55555544
No 13
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=35.22 E-value=67 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.2
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 014530 384 NYFNTPWAIISFLAAAVLLLLTLLQALFAVL 414 (423)
Q Consensus 384 ~yf~npw~~is~~aA~ill~lt~~QT~~sv~ 414 (423)
.-++||-+.++++++.+..+..+.+|+-+++
T Consensus 29 ~llk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 29 PLLKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457899999999999999999999887765
No 14
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis]
Probab=35.12 E-value=64 Score=32.13 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=62.0
Q ss_pred hhhHHHHHhhhcCCCCcchhhHHHHHHhhhCChHhHHHHHHcCc--cccCCCChHHHHHHHHHhhcCCC---CCCCccHH
Q 014530 286 LRNLIAYEQFSHDQNSKHILDYVKFLDCLINSSKDAELLRRCGI--IDNWLGDDEVIAGLISRLGDAVV---LSDQFYYS 360 (423)
Q Consensus 286 lrNLiA~Eq~~~~~~~~~vtsYv~fM~~LI~t~eDV~lL~~kgI--i~~~lgsdeeva~lFn~L~~~~~---~~~~~y~~ 360 (423)
.-|.++++.+-........|+.-.+|-.|||++-|=++|-+.|= +.+...+ .--+-+..+||.++. ..+....+
T Consensus 129 ~m~~~ei~~si~n~sad~lt~~t~~mealin~a~~de~l~rc~~~~~r~aveg-g~ggl~v~klC~n~~~~~~~gt~f~~ 207 (348)
T KOG3942|consen 129 MMKWVEIVTSICNISADLLTNLTMPMEALINPAYDDEMLFRCGPTIARQAVEG-GGGGLFVCKLCTNLGSSWRNGTQFMD 207 (348)
T ss_pred hhhHHHHHHHHHHhHHHHhhccchHHHHHhCcchhHHHHHHHHHHHHHHHHhc-CCCchhHHHHhhhhhhhhhccchHHH
Confidence 34578888732222334577888999999999998888877665 3322111 011224457777765 23443577
Q ss_pred HHHHHHHHhcCCchHHHHHhhcccccCchhHHHHHHH
Q 014530 361 EVFNKVNLHCSRRVNKWKAKLRHNYFNTPWAIISFLA 397 (423)
Q Consensus 361 ~v~~~l~~~~~~r~~~~~a~l~~~yf~npw~~is~~a 397 (423)
.++.-+..++.-| ..++...+.--|.+|+++.
T Consensus 208 ~Lln~lrq~f~~r-----~gl~s~~~~rw~~fisflt 239 (348)
T KOG3942|consen 208 ELLNLLRQGFLLR-----TGLSSLASCRWWRFISFLT 239 (348)
T ss_pred HHHHHHHHhhccc-----hhccchhHHHHHHHHHHHH
Confidence 8888888887544 2333333333344555443
No 15
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=33.09 E-value=61 Score=26.36 Aligned_cols=30 Identities=27% Similarity=0.570 Sum_probs=21.1
Q ss_pred Cchh---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014530 387 NTPW---AIISFLAAAVLLLLTLLQALFAVLSY 416 (423)
Q Consensus 387 ~npw---~~is~~aA~ill~lt~~QT~~sv~~~ 416 (423)
++|| .++-++-+++-++..++||+++.-..
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p~~~ 45 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSPDSS 45 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3566 35666777777777888988886544
No 16
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=32.49 E-value=39 Score=27.94 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 014530 392 IISFLAAAVLLLLTLLQALFAVLSY 416 (423)
Q Consensus 392 ~is~~aA~ill~lt~~QT~~sv~~~ 416 (423)
+++.+.|+++.++.+++|+|+-++-
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs~ 52 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFSA 52 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCcccc
Confidence 4788889999999999999987654
No 17
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=32.21 E-value=73 Score=24.47 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=24.6
Q ss_pred HHHHhhcccccCchhHHHHHHHHHHHHHHHHHH
Q 014530 376 KWKAKLRHNYFNTPWAIISFLAAAVLLLLTLLQ 408 (423)
Q Consensus 376 ~~~a~l~~~yf~npw~~is~~aA~ill~lt~~Q 408 (423)
-|...+...+-+.-|.+|++++++++-++|.+-
T Consensus 19 ~wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 19 YWLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 355555566667889999999998888777653
No 18
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=30.60 E-value=34 Score=32.44 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCCCceEeecCchhhccCCCCCCcceeeecccCCCCccccchHHHHHHHHHHHHhh
Q 014530 12 DHSQFSIFRVPNQLRKINATAYEPEMLAIGPYHHGKDHLMAFEEHKTRYLQNLLHR 67 (423)
Q Consensus 12 ~~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~~~~~l~r 67 (423)
++...||+++|-.+ .+|+||||-.++.-..||+|=-..+.....+
T Consensus 21 nsp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~ehld~~vl~y~~~ 65 (253)
T KOG4134|consen 21 NSPESCLVCITTDL-----------HLALAPYYLANPLHALIEEHLDTKVLFYDSG 65 (253)
T ss_pred cCCcceEEEeeehe-----------eeeecchhhcchhHHHHHHHhhHHHhhhccC
Confidence 57788999999764 6799999998875556777655444444444
No 19
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.28 E-value=1.1e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 014530 388 TPWAIISFLAAAVLLLLTLLQALFAVLSYFQQ 419 (423)
Q Consensus 388 npw~~is~~aA~ill~lt~~QT~~sv~~~~~~ 419 (423)
++|..+|.++=+++.++++-=-+||.+.|+.+
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 46777777766666666666668888887653
No 20
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=28.54 E-value=1.3e+02 Score=22.49 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=32.1
Q ss_pred CChHHHHHHHH-HhhcCCCCCCCccHHHHHHHHHHhcCCc-----hHHHHHhhcccccCchhHHHHHHHHHH
Q 014530 335 GDDEVIAGLIS-RLGDAVVLSDQFYYSEVFNKVNLHCSRR-----VNKWKAKLRHNYFNTPWAIISFLAAAV 400 (423)
Q Consensus 335 gsdeeva~lFn-~L~~~~~~~~~~y~~~v~~~l~~~~~~r-----~~~~~a~l~~~yf~npw~~is~~aA~i 400 (423)
.+-+++++.|+ +...|+. =.++-+...+|=.|. -..|...+ -+.|.||+..+=++||++
T Consensus 4 ~~~~~v~~~l~t~~~~GLs------~~ev~~r~~~~G~N~l~~~~~~s~~~~~-~~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLS------SEEVEERRKKYGPNELPEPKKKSLWRIF-LKQFKNPFIILLLIAAIL 68 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBT------HHHHHHHHHHHSSSSTTTTTSSSHHHHH-HHHTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCCCCCCC------HHHHHHHHHhcccccccccccCcHHHHH-HHHHHhHHHHHHHHHHHH
Confidence 45567777776 5555553 134444555552222 12233333 234689998887777765
No 21
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=27.40 E-value=70 Score=23.53 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 014530 388 TPWAIISFLAAAVLLLLTLLQ 408 (423)
Q Consensus 388 npw~~is~~aA~ill~lt~~Q 408 (423)
+||.+|.++.|+|+--++++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 799999999998877776664
No 22
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=27.20 E-value=1.1e+02 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=29.7
Q ss_pred HHHHHHHHHH--hcCCchHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHH
Q 014530 359 YSEVFNKVNL--HCSRRVNKWKAKLRHNYFNTPWAIISFLAAAVLLLLTLLQAL 410 (423)
Q Consensus 359 ~~~v~~~l~~--~~~~r~~~~~a~l~~~yf~npw~~is~~aA~ill~lt~~QT~ 410 (423)
+.+-++.+|+ .+++|.+-....+ + +.||.++|.++|-++++.-+.||=
T Consensus 8 L~~~id~iN~~E~RDnkprFs~~Fi-~---~HP~L~~~M~~~y~~~~~lm~~sp 57 (155)
T PF10777_consen 8 LIEEIDRINREEKRDNKPRFSSSFI-R---NHPYLCLAMYAAYLAVAALMYYSP 57 (155)
T ss_pred HHHHHHHHHHHhccCCCccccHHHH-H---hCcHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666663 3556654333333 3 258999888888777776666653
No 23
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=27.12 E-value=1.3e+02 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh-hcccC
Q 014530 388 TPWAIISFLAAAVLLLLTLLQALFAVL-SYFQQ 419 (423)
Q Consensus 388 npw~~is~~aA~ill~lt~~QT~~sv~-~~~~~ 419 (423)
.+|.++|.++=++..++++-=-+||.+ .|+.+
T Consensus 42 ~~wRalSii~FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 42 YTWRALSIICFILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 478888888777777777777788888 56653
No 24
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove. MH1 is present in Smad proteins, an important family of proteins involved in TGF-beta signalling and frequent targets of tumorigenic mutations. Also known as Domain A in dwarfin family proteins.
Probab=24.31 E-value=50 Score=28.36 Aligned_cols=33 Identities=27% Similarity=0.787 Sum_probs=22.6
Q ss_pred CceEeecCc-----hhhccC--CCCCC--cceeeecccCCCC
Q 014530 15 QFSIFRVPN-----QLRKIN--ATAYE--PEMLAIGPYHHGK 47 (423)
Q Consensus 15 ~~~I~rVP~-----~lr~~n--~~aY~--P~~VSIGPyHhg~ 47 (423)
-|.+||-|+ .|+.+. +.+|. +..|.|-|||+.+
T Consensus 77 ~crlwRWpDL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~r 118 (121)
T cd00049 77 YCRVWRWPDLRSNHELKRLETCEHAFDSKPDEVCINPYHYSR 118 (121)
T ss_pred EEeeeeccccCchHhheeCccCCCccccCCCeEEeCCceeee
Confidence 356788765 445543 34453 8899999999864
No 25
>PF15315 FRG2: Facioscapulohumeral muscular dystrophy candidate 2
Probab=20.89 E-value=1.1e+02 Score=27.71 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=30.0
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014530 382 RHNYFNTPWAIISFLAAAVLLLLTLLQALFAVLS 415 (423)
Q Consensus 382 ~~~yf~npw~~is~~aA~ill~lt~~QT~~sv~~ 415 (423)
.+.++.=.|--++.++-+-.-++..+||+|++-.
T Consensus 136 Qq~~spLt~EQl~~L~qL~gpL~a~vqT~ysmA~ 169 (181)
T PF15315_consen 136 QQHHSPLTWEQLSQLAQLRGPLCAAVQTLYSMAT 169 (181)
T ss_pred HhhcCCCCHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 3678888899999999999999999999999854
No 26
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.39 E-value=1.3e+02 Score=23.94 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=14.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHH
Q 014530 385 YFNTPWAIISFLAAAVLLLLTLLQ 408 (423)
Q Consensus 385 yf~npw~~is~~aA~ill~lt~~Q 408 (423)
-|+||-..+|+++|+++++.++..
T Consensus 7 R~kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777766666554433
Done!