Query 014530
Match_columns 423
No_of_seqs 122 out of 678
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 18.2 1.1E+02 0.0038 19.3 2.9 27 393-419 6-32 (34)
2 1pue_E Protein (transcription 15.2 1.4E+02 0.0049 23.0 3.6 42 327-372 28-70 (89)
3 3ism_C CG4930; endonuclease, e 12.8 1.9E+02 0.0064 27.7 4.3 66 318-383 219-301 (359)
4 1v54_G Cytochrome C oxidase po 12.2 1.3E+02 0.0046 23.0 2.7 24 388-411 14-37 (85)
5 3f2b_A DNA-directed DNA polyme 11.2 4.7E+02 0.016 29.2 7.6 88 243-336 935-1024(1041)
6 2l27_B Peptide agonist; CRF, E 11.2 51 0.0017 21.3 -0.1 20 274-294 1-20 (38)
7 1sbx_A SKI oncogene, C-SKI; wi 10.8 2.3E+02 0.0079 22.6 3.7 66 269-348 33-104 (106)
8 1u9l_A Transcription elongatio 10.7 2.8E+02 0.0096 20.1 3.9 30 308-342 6-35 (70)
9 2y69_G Cytochrome C oxidase po 9.8 1.8E+02 0.0061 22.9 2.7 25 388-412 26-50 (97)
10 2kru_A Light-independent proto 9.7 1.2E+02 0.0039 22.0 1.4 15 151-165 14-28 (63)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=18.20 E-value=1.1e+02 Score=19.34 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q 014530 393 ISFLAAAVLLLLTLLQALFAVLSYFQQ 419 (423)
Q Consensus 393 is~~aA~ill~lt~~QT~~sv~~~~~~ 419 (423)
.++++++.++-+.++=+++.++..|-+
T Consensus 6 ~GTl~~V~ilg~~I~i~W~~vf~lFl~ 32 (34)
T 3s8f_C 6 KGALAVILVLTLTILVFWLGVYAVFFA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHHHHHHHHeeeec
Confidence 356777777778888888888765543
No 2
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=15.24 E-value=1.4e+02 Score=23.02 Aligned_cols=42 Identities=10% Similarity=-0.037 Sum_probs=28.3
Q ss_pred cCccccCCCChHHHHHHHHHhhcCCC-CCCCccHHHHHHHHHHhcCC
Q 014530 327 CGIIDNWLGDDEVIAGLISRLGDAVV-LSDQFYYSEVFNKVNLHCSR 372 (423)
Q Consensus 327 kgIi~~~lgsdeeva~lFn~L~~~~~-~~~~~y~~~v~~~l~~~~~~ 372 (423)
+|++.=-.-+.|+||+++ +.-|+.. .+ + |..+...+.-||+.
T Consensus 28 ~g~Fk~~~~~~e~VArlW-G~rK~Nk~~M--n-YeKlSRaLRyYY~~ 70 (89)
T 1pue_E 28 KGTFQFSSKHKEALAHRW-GIQKGNRKKM--T-YEKMARALRNYGKT 70 (89)
T ss_dssp TTEEEECTTTHHHHHHHH-HHHHTCSSCC--C-HHHHHHHHHHHHHH
T ss_pred CcEEEEecCChHHHHHHh-hcccCCCCCc--C-HHHHHHHHHHHHHc
Confidence 344432233678999999 4556433 22 4 99999999999864
No 3
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=12.79 E-value=1.9e+02 Score=27.68 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=44.2
Q ss_pred hHhHHHHHHcCccccCCCChHHHHHHHHHhhcCCC--------C--CCCccHHHHHHHHHHhcC-----Cc--hHHHHHh
Q 014530 318 SKDAELLRRCGIIDNWLGDDEVIAGLISRLGDAVV--------L--SDQFYYSEVFNKVNLHCS-----RR--VNKWKAK 380 (423)
Q Consensus 318 ~eDV~lL~~kgIi~~~lgsdeeva~lFn~L~~~~~--------~--~~~~y~~~v~~~l~~~~~-----~r--~~~~~a~ 380 (423)
.+|-+.|.++||+.+-.-.|+---.-|+++|+.+. + +...-|.++.+-|.+|.. .+ .|-|+..
T Consensus 219 leDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWIvk 298 (359)
T 3ism_C 219 LEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIFN 298 (359)
T ss_dssp CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHHHH
Confidence 47888888999888888788665667778777642 1 122228899999999853 33 4688877
Q ss_pred hcc
Q 014530 381 LRH 383 (423)
Q Consensus 381 l~~ 383 (423)
||.
T Consensus 299 lrd 301 (359)
T 3ism_C 299 LRD 301 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 4
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=12.25 E-value=1.3e+02 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 014530 388 TPWAIISFLAAAVLLLLTLLQALF 411 (423)
Q Consensus 388 npw~~is~~aA~ill~lt~~QT~~ 411 (423)
+-|+-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999988888888888764
No 5
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=11.24 E-value=4.7e+02 Score=29.21 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHHHHHcCcEEEecC-CCCc-cceEEcCceEEeceEEecCcchHhhhhHHHHHhhhcCCCCcchhhHHHHHHhhhCChHh
Q 014530 243 ATEIQEAGVKFQKVE-DGLL-FDIKFDNGVMKIPTLAIGDTTEAVLRNLIAYEQFSHDQNSKHILDYVKFLDCLINSSKD 320 (423)
Q Consensus 243 AteL~~aGVkfk~~~-~~~l-lDV~F~~G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~~~vtsYv~fM~~LI~t~eD 320 (423)
+.|.++.||+|.+.+ ..|- .+-+..++.+.+|=-.|..-.+....++++--+ .+.++|.--|....--+...
T Consensus 935 v~Ea~~~Gi~vlppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~aR~------~gpF~s~~Df~~R~~v~k~~ 1008 (1041)
T 3f2b_A 935 ALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRARE------EGEFLSKEDLQQRGKLSKTL 1008 (1041)
T ss_dssp HHHHHHTTCEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHH------TSCCCSHHHHHHHHTCCHHH
T ss_pred HHHHHHcCCeeCcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHHHh------CCCCCCHHHHHHHHCcCHHH
Confidence 457789999999864 2222 233345788888888888888888888886322 14588888898888889999
Q ss_pred HHHHHHcCccccCCCC
Q 014530 321 AELLRRCGIIDNWLGD 336 (423)
Q Consensus 321 V~lL~~kgIi~~~lgs 336 (423)
++.|.+.|.+...-.+
T Consensus 1009 lE~Li~aGAfd~l~~~ 1024 (1041)
T 3f2b_A 1009 LEYLESRGCLDSLPDH 1024 (1041)
T ss_dssp HHHHHHTTTTTTSCSS
T ss_pred HHHHHHCCCCcCCCch
Confidence 9999999999865333
No 6
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=11.17 E-value=51 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.1
Q ss_pred ceEEecCcchHhhhhHHHHHh
Q 014530 274 PTLAIGDTTEAVLRNLIAYEQ 294 (423)
Q Consensus 274 P~l~id~~T~~llrNLiA~Eq 294 (423)
|++.+| -|--+|||++-...
T Consensus 1 PPiSlD-LTFhlLR~m~emar 20 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAK 20 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHH
Confidence 677777 48899999987765
No 7
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=10.77 E-value=2.3e+02 Score=22.59 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=43.5
Q ss_pred ceEEeceEEecCcchHhhhhHHHHHhhhcCCC-CcchhhHHHHHHhhhCChHhHHHHHHcCccccCCC-----ChHHHHH
Q 014530 269 GVMKIPTLAIGDTTEAVLRNLIAYEQFSHDQN-SKHILDYVKFLDCLINSSKDAELLRRCGIIDNWLG-----DDEVIAG 342 (423)
Q Consensus 269 G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~-~~~vtsYv~fM~~LI~t~eDV~lL~~kgIi~~~lg-----sdeeva~ 342 (423)
..|-+|++ .+.+|+|+. +.| -+... .-.++ .-.+|+|-++.|+..|+|...-. +.+++..
T Consensus 33 ~rlCLPQi-----~~~~Lk~~~-l~~-I~~~~~~L~I~-------~~~Ct~eQl~~Lk~~g~ip~~a~~CgLItk~Daer 98 (106)
T 1sbx_A 33 KRLCLPQI-----LNSVLRDFS-LQQ-INAVCDELHIY-------CSRCTADQLEILKVMGILPFSAPSCGLITKTDAER 98 (106)
T ss_dssp EEEEHHHH-----HTTTTTTSC-HHH-HHHHHHHTTCC-------CEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHH
T ss_pred EEEehHHH-----HHHHHHhCC-HHH-HHHHHHHhCcc-------cccCCHHHHHHHHHcCccCCCCcccCceeHHHHHH
Confidence 35888988 566788877 555 33210 01111 23689999999999999997653 4567777
Q ss_pred HHHHhh
Q 014530 343 LISRLG 348 (423)
Q Consensus 343 lFn~L~ 348 (423)
|.+.+-
T Consensus 99 L~~~ll 104 (106)
T 1sbx_A 99 LCNALL 104 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777653
No 8
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=10.66 E-value=2.8e+02 Score=20.13 Aligned_cols=30 Identities=23% Similarity=0.084 Sum_probs=24.1
Q ss_pred HHHHHhhhCChHhHHHHHHcCccccCCCChHHHHH
Q 014530 308 VKFLDCLINSSKDAELLRRCGIIDNWLGDDEVIAG 342 (423)
Q Consensus 308 v~fM~~LI~t~eDV~lL~~kgIi~~~lgsdeeva~ 342 (423)
-.||..|==++.|++.|.+.|+ .+-|+|+-
T Consensus 6 ~~f~~~lgI~e~~a~~L~~~Gf-----~tve~vA~ 35 (70)
T 1u9l_A 6 DTFTKYLDIDEDFATVLVEEGF-----STLEELAY 35 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTC-----CCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHcCc-----CcHHHHHc
Confidence 3688888888999999999998 45666664
No 9
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.82 E-value=1.8e+02 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 014530 388 TPWAIISFLAAAVLLLLTLLQALFA 412 (423)
Q Consensus 388 npw~~is~~aA~ill~lt~~QT~~s 412 (423)
+-|+-|++++|+=+++++.++++..
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~~ 50 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWLH 50 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588899988888888888887643
No 10
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=9.70 E-value=1.2e+02 Score=22.01 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=10.8
Q ss_pred ccCchHHHHHHHHhh
Q 014530 151 ENQLPFFVLWELFSM 165 (423)
Q Consensus 151 ENQiPffVL~~L~~~ 165 (423)
=++|||||=.++=.-
T Consensus 14 LkkIP~FVR~kvrr~ 28 (63)
T 2kru_A 14 LGKVPFFVRKKVRKN 28 (63)
T ss_dssp HTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH
Confidence 366999997666544
Done!