Query 014530
Match_columns 423
No_of_seqs 122 out of 678
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 13:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014530.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014530hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 35.7 20 0.0015 26.4 4.3 54 56-110 4-79 (97)
2 d1v54g_ f.23.2.1 (G:) Mitochon 18.1 36 0.0026 24.4 2.7 22 389-410 15-36 (84)
3 d2i4ra1 c.149.1.1 (A:4-79) V-t 17.3 28 0.002 24.3 1.9 23 19-41 54-76 (76)
4 d1puee_ a.4.5.21 (E:) Transcri 17.2 57 0.0041 23.4 3.6 43 327-373 28-71 (88)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 16.2 67 0.0049 18.1 2.9 23 395-417 7-29 (33)
6 d1f16a_ f.1.4.1 (A:) Proapopto 13.8 1.3E+02 0.0093 24.4 5.6 14 358-371 132-145 (192)
7 d1v8ca2 d.129.5.1 (A:88-165) M 13.7 36 0.0026 23.0 1.5 12 269-280 49-60 (78)
8 d1awca_ a.4.5.21 (A:) GA bindi 13.6 59 0.0043 24.3 3.0 62 335-400 32-95 (110)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 13.5 97 0.0071 16.6 3.0 20 402-421 6-25 (27)
10 d1duxc_ a.4.5.21 (C:) Elk-1 {H 10.7 1.8E+02 0.013 20.5 4.7 35 335-373 33-67 (86)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.67 E-value=20 Score=26.45 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhccCCC----CHHHHHHHHH---------------HHHHHHhhhhc---CCCCCChHHHHHHHHhh
Q 014530 56 HKTRYLQNLLHRRSLNR----SLSDYVTTLR---------------ALEEKARKCYG---GSISLDKEEFVEMMLLD 110 (423)
Q Consensus 56 ~K~~~~~~~l~r~~~~~----~l~~~~~~i~---------------~~e~~~R~~Y~---~~~~~~~~ef~~MmllD 110 (423)
.|.||+-+.+... .|. .++.++..+. .+|..+|.|+. ..-+++.++|+..|..|
T Consensus 4 dKyRYlF~qisd~-~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~~e 79 (97)
T d1eg3a2 4 DKYRYLFKQVASS-TGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLE 79 (97)
T ss_dssp HHHHHHHHHHSCT-TSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHHhC
Confidence 5999999999872 222 3555554443 24778888884 23347777777665543
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.13 E-value=36 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 014530 389 PWAIISFLAAAVLLLLTLLQAL 410 (423)
Q Consensus 389 pw~~is~~aA~ill~lt~~QT~ 410 (423)
-|+.|++++|+-+++++.+.++
T Consensus 15 lWkkis~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSW 36 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999998888875
No 3
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=17.29 E-value=28 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=19.7
Q ss_pred eecCchhhccCCCCCCcceeeec
Q 014530 19 FRVPNQLRKINATAYEPEMLAIG 41 (423)
Q Consensus 19 ~rVP~~lr~~n~~aY~P~~VSIG 41 (423)
-+.|+.+++...+.-.|.++.||
T Consensus 54 ~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 54 KKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp TTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHhhHHHHHHHhcCCCCEEEecC
Confidence 36788888888888999999998
No 4
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.21 E-value=57 Score=23.42 Aligned_cols=43 Identities=9% Similarity=-0.033 Sum_probs=29.1
Q ss_pred cCccccCCCChHHHHHHHHHhhcCCC-CCCCccHHHHHHHHHHhcCCc
Q 014530 327 CGIIDNWLGDDEVIAGLISRLGDAVV-LSDQFYYSEVFNKVNLHCSRR 373 (423)
Q Consensus 327 kgIi~~~lgsdeeva~lFn~L~~~~~-~~~~~y~~~v~~~l~~~~~~r 373 (423)
+||+.=-..+.|+||+++- .-|+.. .+ + |..+...|.-||+..
T Consensus 28 ~g~F~fv~~~~e~VA~lWG-~~K~Nr~~M--n-YeklSRaLRyYY~~~ 71 (88)
T d1puee_ 28 KGTFQFSSKHKEALAHRWG-IQKGNRKKM--T-YEKMARALRNYGKTG 71 (88)
T ss_dssp TTEEEECTTTHHHHHHHHH-HHHTCSSCC--C-HHHHHHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHH-hhcCCCCCC--c-HHHHHHHHHHHHhcc
Confidence 5555533445789999994 344332 23 4 999999999998753
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=16.16 E-value=67 Score=18.10 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 014530 395 FLAAAVLLLLTLLQALFAVLSYF 417 (423)
Q Consensus 395 ~~aA~ill~lt~~QT~~sv~~~~ 417 (423)
.++-+.+|.+|++--++.++..+
T Consensus 7 al~vi~il~l~ilvfw~gv~avf 29 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667776677776654
No 6
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.81 E-value=1.3e+02 Score=24.40 Aligned_cols=14 Identities=0% Similarity=-0.192 Sum_probs=6.7
Q ss_pred cHHHHHHHHHHhcC
Q 014530 358 YYSEVFNKVNLHCS 371 (423)
Q Consensus 358 y~~~v~~~l~~~~~ 371 (423)
+...++.-+-+|-.
T Consensus 132 ~v~~i~~~~~~fl~ 145 (192)
T d1f16a_ 132 LIRTIMGWTLDFLR 145 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555545443
No 7
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.73 E-value=36 Score=23.02 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=10.1
Q ss_pred ceEEeceEEecC
Q 014530 269 GVMKIPTLAIGD 280 (423)
Q Consensus 269 G~L~IP~l~id~ 280 (423)
|.|.||+|.|.-
T Consensus 49 gsl~ip~lrvev 60 (78)
T d1v8ca2 49 GSLSIPQLRVEV 60 (78)
T ss_dssp TTEEEEEEEEEE
T ss_pred cceecceEEEEe
Confidence 889999998753
No 8
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.61 E-value=59 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHhcCCch-HHHH-HhhcccccCchhHHHHHHHHHH
Q 014530 335 GDDEVIAGLISRLGDAVVLSDQFYYSEVFNKVNLHCSRRV-NKWK-AKLRHNYFNTPWAIISFLAAAV 400 (423)
Q Consensus 335 gsdeeva~lFn~L~~~~~~~~~~y~~~v~~~l~~~~~~r~-~~~~-a~l~~~yf~npw~~is~~aA~i 400 (423)
-+.++||+++ +..|+-..+ + |.++...+..||++.- .+-. ..+..++..+||..++.-++-+
T Consensus 32 ~d~e~VA~lW-G~~Knk~~M--~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~l 95 (110)
T d1awca_ 32 NQPELVAQKW-GQRKNKPTM--N-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAEL 95 (110)
T ss_dssp SSHHHHHHHH-HHHHTCTTC--C-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHH
T ss_pred CCHHHHHHHH-HHhhCCCcc--c-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHHH
Confidence 4689999999 455543322 4 9999999999998753 1222 3466788899999876555443
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.51 E-value=97 Score=16.63 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhcccCCC
Q 014530 402 LLLTLLQALFAVLSYFQQTQ 421 (423)
Q Consensus 402 l~lt~~QT~~sv~~~~~~~~ 421 (423)
.+.|+..-+|+.++-|++|.
T Consensus 6 i~~tl~glf~aayqqykrpn 25 (27)
T d2e74g1 6 VFATLGGLFYAAYQQYKRPN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHhcCCC
Confidence 44567777888888777664
No 10
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.75 E-value=1.8e+02 Score=20.51 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHhcCCc
Q 014530 335 GDDEVIAGLISRLGDAVVLSDQFYYSEVFNKVNLHCSRR 373 (423)
Q Consensus 335 gsdeeva~lFn~L~~~~~~~~~~y~~~v~~~l~~~~~~r 373 (423)
-+.++||+++ +.-|+-..+ + |..+...+..||++.
T Consensus 33 v~~~~VA~lW-G~~Knk~~M--n-YeklSRaLRyyY~~~ 67 (86)
T d1duxc_ 33 VDAEEVARLW-GLRKNKTNM--N-YDKLSRALRYYYDKN 67 (86)
T ss_dssp TTHHHHHHHH-HHTTTCSCC--C-HHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHH-HhccCCCCC--C-HHHHHHHHHHHHhcc
Confidence 3679999999 455543232 4 999999999999864
Done!