BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014531
         (423 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GUM4|Y3739_ARATH Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana
           GN=At3g27390 PE=1 SV=2
          Length = 588

 Score =  308 bits (789), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 242/414 (58%), Gaps = 18/414 (4%)

Query: 1   MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAV 60
           +VRDF D+C+HSY   + E+++S    +   +RL  +PG ++  +LG++VD P+ +++A+
Sbjct: 145 VVRDFKDVCFHSYFSLMDELKQSCPDRKYYEIRLLQLPGALVVSVLGILVDPPVISLVAI 204

Query: 61  IKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIG 120
            KSPYMLFKGW RL HDLI REGPFLET C+PIAGL ILLWP+ V G+++ ++ SSIF+G
Sbjct: 205 CKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLG 264

Query: 121 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 180
            Y  VV YQE SF  G+ Y++A V+ +DEY+ D L L EG+  P+P+YR+K    +   P
Sbjct: 265 AYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKDEEPT---P 321

Query: 181 VGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELL 240
             G     G   +AS+              SVR  + ++K + +   +   C   G  L 
Sbjct: 322 FSGPVPRLGSVKNASS----------MRGGSVRVPMIDIKPLDLLNELFVECRRYGEVLA 371

Query: 241 DADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSV-EITH 299
              +I   D+++   A+      ++  GLP Y  L  +L S+KA S GLLL D V EIT 
Sbjct: 372 TKGLINSKDIEE---ARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEITT 428

Query: 300 LNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPE 359
           +NRP +   DWF NP ++LKEQ+    L+E E  YL ++VL     ER+++ +     P 
Sbjct: 429 MNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERLKSSNAISASPP 488

Query: 360 DALRA-AQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSD 412
              R  A++   +RRM GL ++VS++PT+RR F  +VK L    + +   S  D
Sbjct: 489 LTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDNNSAKD 542


>sp|P40978|RS19_ORYSJ 40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A
           PE=3 SV=1
          Length = 146

 Score = 33.9 bits (76), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 141 IAMVAEFDE---YTNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASAD 197
           I   A F E   Y  DW Y R  +I        +K++    + VGG Q   G      + 
Sbjct: 39  IVKTARFKELPPYDPDWYYTRAASIA-------RKIYLRQGIGVGGFQKIYGGRQRNGSR 91

Query: 198 APAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLD 241
            P     S A SR++ + +Q++ ++ +     R   ++GR  LD
Sbjct: 92  PPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLD 135


>sp|P36598|THI1_SCHPO Thiamine repressible genes regulatory protein thi1
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=thi1 PE=1 SV=2
          Length = 775

 Score = 33.1 bits (74), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 94  AGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRR-GVAYVIAMVAEFDEYTN 152
           A L+I  +P++++ S V A+ SS+ IGLY    +Y++ SF   G+A   A+     + ++
Sbjct: 326 AALSI--FPLVLLQSDVSAVQSSLLIGLYLQSTIYEKSSFAYFGLAIKFAVALGLHKNSD 383

Query: 153 D 153
           D
Sbjct: 384 D 384


>sp|A1RZ10|COXX_THEPD Protoheme IX farnesyltransferase OS=Thermofilum pendens (strain Hrk
           5) GN=ctaB PE=3 SV=1
          Length = 282

 Score = 33.1 bits (74), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 38  PGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWF 72
           P   +AGLLG ++DI +YTV+   KSP+ +  G F
Sbjct: 107 PYVFVAGLLGFLIDIAVYTVLLKRKSPWSVVFGGF 141


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,991,723
Number of Sequences: 539616
Number of extensions: 6350390
Number of successful extensions: 14711
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14703
Number of HSP's gapped (non-prelim): 8
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)