BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014533
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408
K + G LP T+V++SW H PYPTE++K ++ +T L L Q+NNWFIN R+R
Sbjct: 8 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 67
Query: 409 SNPST 413
S PS+
Sbjct: 68 SGPSS 72
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 352 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
+G P T++ ++W H PYP+EE K +L Q+TGL + Q+NNWFIN R+R
Sbjct: 2 SGIFPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
K+R G LP ++ +L+ W H YP+EE+K L ++T L L QI+NWFIN R+R
Sbjct: 8 KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 355 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
LP ++ +L+ W H YP+E++KA L Q+T L Q+ NWFIN R+R
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
RKRR T +L ++ SH PYP+EE K L +++G+ + Q++NWF N+R R
Sbjct: 4 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIR 59
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
RKRR T +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
RKRR T +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
RKRR + +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIR 58
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 360 TSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
T +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 15 TEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 17/73 (23%)
Query: 348 RKRRAGKLP-----GDTTS---------VLKSWWQSHSKWPYPTEEDKARLVQETGLQLK 393
R RR LP G+ TS VL+ W+ +H+ PYP+ +K L + TGL
Sbjct: 480 RVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWY-AHN--PYPSPREKRELAEATGLTTT 536
Query: 394 QINNWFINQRKRN 406
Q++NWF N+R+R+
Sbjct: 537 QVSNWFKNRRQRD 549
>pdb|1APL|C Chain C, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1APL|D Chain D, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1YRN|B Chain B, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1AKH|B Chain B, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 83
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
R + + +L+SW+ + + PY + L++ T L QI NW N+R++
Sbjct: 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 59
>pdb|1K61|A Chain A, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|B Chain B, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|C Chain C, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|D Chain D, Matalpha2 Homeodomain Bound To Dna
Length = 60
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
R + + +L+SW+ + + PY + L++ T L QI NW N+R++
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55
>pdb|2DA5|A Chain A, Solution Structure Of The Second Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 3 (Triple Homeobox 1
Protein)
Length = 75
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 363 LKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
L++ S ++ P P +E+ RL ET + ++I++WF +RK+
Sbjct: 19 LRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
>pdb|1MNM|C Chain C, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|D Chain D, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 87
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
R + + +L+SW+ + + PY + L++ T L QI NW N+R++
Sbjct: 30 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 355 LPGDTTSVLKSWWQSHS--KWPYPTEEDKARLVQETGLQLKQINN 397
+P DT + W +H KWP P D AR + + GL K + +
Sbjct: 374 IPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTS 418
>pdb|1USD|A Chain A, Human Vasp Tetramerisation Domain L352m
Length = 45
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 312 PTESERSLMERVRQELKHELK---QGYKEKIVDIREEILRKR 350
P+ S+ S ++RV+QEL E+K Q KE+I++ + LRKR
Sbjct: 1 PSSSDYSDLQRVKQELMEEVKKELQKVKEEIIEAFVQELRKR 42
>pdb|1USE|A Chain A, Human Vasp Tetramerisation Domain
Length = 45
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 312 PTESERSLMERVRQELKHELK---QGYKEKIVDIREEILRKR 350
P+ S+ S ++RV+QEL E+K Q KE+I++ + LRKR
Sbjct: 1 PSSSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRKR 42
>pdb|2DMP|A Chain A, Solution Structure Of The Third Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 2
Length = 89
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 404
K T +K S K +PT+ + RL ET L ++I++WF +RK
Sbjct: 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRK 66
>pdb|1LE8|B Chain B, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 83
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
R + + +L+SW+ + + PY + L++ T L QI NW +R +
Sbjct: 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59
>pdb|3NAR|A Chain A, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
pdb|3NAR|B Chain B, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
Length = 96
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 371 SKWPYPTEEDKARLVQETGLQLKQINNWFINQR 403
++WP P E DK L +E+GL I +WF + R
Sbjct: 47 TQWPSPEEYDK--LAKESGLARTDIVSWFGDTR 77
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 376 PTEEDKARLVQETGLQLKQINNWFINQRKRN 406
P++E + + Q+ GL+L ++N+F+N R+R+
Sbjct: 122 PSKELQITISQQLGLELSTVSNFFMNARRRS 152
>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
Length = 417
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 219 VVSKYSALGAGQGLVTDDKELDQFMQHV-----RVHAMEAVMACWEIEQSLQSLTGVSPG 273
VV K S L AG+G VT +L Q Q V R E V+ + +E ++ ++ G
Sbjct: 139 VVVKDSGLAAGKG-VTVAFDLHQAKQAVANILNRAEGGEVVVEEY-LEGEEATVLALTDG 196
Query: 274 EGTGATMSXXXXXXXXXXANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKQ 333
E + L DG +GP T G G + P + + + RV +E+ L +
Sbjct: 197 E------TILPLLPSQDHKRLLDGD-QGPXTGGXGAVAPYPXDEATLRRVEEEILGPLVR 249
Query: 334 GYKEKIVDIR 343
G + + V R
Sbjct: 250 GLRAEGVVYR 259
>pdb|3NAU|A Chain A, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
pdb|3NAU|B Chain B, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
Length = 66
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 375 YPTEEDKARLVQETGLQLKQINNWFINQRKR 405
+P + + RL++ TGL +I WF + R R
Sbjct: 28 FPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 323 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKW------PYP 376
+R L + ++ G ++VD EILR +A KL + + W ++ P P
Sbjct: 137 IRTMLYYPMELG---RLVD---EILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 190
Query: 377 TEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKR 421
T ED+AR E+G Q + ++ WF W + S V +++R
Sbjct: 191 TTEDQARARMESG-QYRSLDWWFC------WDTPASRDDVEEARR 228
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 323 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKW------PYP 376
+R L + ++ G ++VD EILR +A KL + + W ++ P P
Sbjct: 136 IRTMLYYPMELG---RLVD---EILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 189
Query: 377 TEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKR 421
T ED+AR E+G Q + ++ WF W + S V +++R
Sbjct: 190 TTEDQARARMESG-QYRSLDWWFC------WDTPASRDDVEEARR 227
>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2NVL|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
Length = 250
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 323 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKW------PYP 376
+R L + ++ G ++VD EILR +A KL + + W ++ P P
Sbjct: 137 IRTMLYYPMELG---RLVD---EILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 190
Query: 377 TEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKR 421
T ED+AR E+G Q + ++ WF W + S V +++R
Sbjct: 191 TTEDQARARMESG-QYRSLDWWFC------WDTPASRDDVEEARR 228
>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408
KR ++ D VL+ ++ ++ P+EE + ++GL K I +WF N +
Sbjct: 8 KRPRTRITDDQLRVLRQYFDINNS---PSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 64
Query: 409 SNPST 413
S PS+
Sbjct: 65 SGPSS 69
>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|B Chain B, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|C Chain C, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|D Chain D, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|E Chain E, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|F Chain F, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|G Chain G, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|H Chain H, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|I Chain I, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|J Chain J, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
Length = 249
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 323 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKW------PYP 376
+R L + ++ G ++VD EILR +A KL + + W ++ P P
Sbjct: 136 IRTMLYYPMELG---RLVD---EILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 189
Query: 377 TEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKR 421
T ED+AR E+G Q + ++ WF W + S V +++R
Sbjct: 190 TTEDQARARMESG-QYRSLDWWFC------WDTPASRDDVEEARR 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,516,035
Number of Sequences: 62578
Number of extensions: 360426
Number of successful extensions: 1399
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 40
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)