Query 014533
Match_columns 423
No_of_seqs 252 out of 1080
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 6E-18 2E-22 137.2 7.0 63 347-409 6-68 (83)
2 1x2n_A Homeobox protein pknox1 99.7 2.3E-17 7.8E-22 129.9 7.7 66 348-413 7-72 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 2E-17 6.8E-22 129.3 6.8 61 352-412 2-62 (67)
4 2lk2_A Homeobox protein TGIF1; 99.7 1.5E-17 5.1E-22 138.1 4.8 57 353-409 10-66 (89)
5 1du6_A PBX1, homeobox protein 99.7 6.3E-17 2.1E-21 124.2 7.1 62 348-409 3-64 (64)
6 1le8_B Mating-type protein alp 99.7 1.3E-16 4.5E-21 129.1 8.5 64 349-412 3-66 (83)
7 1k61_A Mating-type protein alp 99.7 1.4E-16 4.7E-21 120.9 7.5 59 351-409 1-59 (60)
8 1puf_B PRE-B-cell leukemia tra 99.7 1.6E-16 5.3E-21 125.1 7.5 65 349-413 2-66 (73)
9 1b72_B Protein (PBX1); homeodo 99.6 2.2E-16 7.6E-21 127.9 7.0 63 349-411 2-64 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 3.9E-16 1.3E-20 127.0 7.6 61 348-408 27-87 (87)
11 2ecc_A Homeobox and leucine zi 99.5 1.3E-14 4.4E-19 117.2 7.1 59 350-411 5-63 (76)
12 2cra_A Homeobox protein HOX-B1 99.5 2.2E-14 7.6E-19 112.1 8.1 64 348-414 7-70 (70)
13 2dmu_A Homeobox protein goosec 99.5 1.8E-14 6.2E-19 112.4 7.5 64 348-414 7-70 (70)
14 2djn_A Homeobox protein DLX-5; 99.5 1.8E-14 6.2E-19 112.6 7.0 64 348-414 7-70 (70)
15 1akh_A Protein (mating-type pr 99.5 1.7E-14 5.8E-19 109.5 6.5 57 348-407 5-61 (61)
16 2e1o_A Homeobox protein PRH; D 99.5 1.9E-14 6.6E-19 112.4 6.9 64 348-414 7-70 (70)
17 2da3_A Alpha-fetoprotein enhan 99.5 2.9E-14 1E-18 113.4 7.0 64 348-414 17-80 (80)
18 2da2_A Alpha-fetoprotein enhan 99.5 4.4E-14 1.5E-18 110.1 7.8 64 348-414 7-70 (70)
19 2dmt_A Homeobox protein BARH-l 99.5 5E-14 1.7E-18 112.8 8.1 64 348-414 17-80 (80)
20 2hdd_A Protein (engrailed home 99.5 5.5E-14 1.9E-18 107.0 6.9 60 347-409 2-61 (61)
21 1bw5_A ISL-1HD, insulin gene e 99.5 7.6E-14 2.6E-18 107.7 7.6 61 348-411 3-63 (66)
22 2da4_A Hypothetical protein DK 99.5 2.4E-14 8.1E-19 114.6 4.6 66 348-413 8-74 (80)
23 2da1_A Alpha-fetoprotein enhan 99.5 7.1E-14 2.4E-18 108.9 6.8 63 348-413 7-69 (70)
24 1ig7_A Homeotic protein MSX-1; 99.4 1.3E-13 4.3E-18 103.7 6.7 57 349-408 1-57 (58)
25 2h1k_A IPF-1, pancreatic and d 99.4 1.5E-13 5.3E-18 105.2 6.7 59 348-409 3-61 (63)
26 1jgg_A Segmentation protein EV 99.4 1.6E-13 5.6E-18 104.0 6.7 58 349-409 2-59 (60)
27 1fjl_A Paired protein; DNA-bin 99.4 5.6E-14 1.9E-18 112.7 4.1 62 347-411 17-78 (81)
28 1wh5_A ZF-HD homeobox family p 99.4 1.9E-13 6.6E-18 110.3 6.9 62 348-409 17-79 (80)
29 2l7z_A Homeobox protein HOX-A1 99.4 3.1E-13 1.1E-17 106.6 7.9 62 348-412 7-68 (73)
30 2k40_A Homeobox expressed in E 99.4 2.1E-13 7E-18 105.6 6.6 60 349-411 2-61 (67)
31 3rkq_A Homeobox protein NKX-2. 99.4 2.2E-13 7.5E-18 101.7 6.5 57 348-407 2-58 (58)
32 1ahd_P Antennapedia protein mu 99.4 1.6E-13 5.4E-18 106.9 5.9 63 348-413 2-64 (68)
33 2vi6_A Homeobox protein nanog; 99.4 2.7E-13 9.2E-18 103.5 7.0 59 348-409 3-61 (62)
34 2dmq_A LIM/homeobox protein LH 99.4 2.3E-13 7.8E-18 108.6 6.6 59 348-409 7-65 (80)
35 2dn0_A Zinc fingers and homeob 99.4 4.5E-13 1.5E-17 106.3 7.6 62 350-414 10-71 (76)
36 1ftt_A TTF-1 HD, thyroid trans 99.4 3.6E-13 1.2E-17 104.8 6.6 61 348-411 2-62 (68)
37 2dms_A Homeobox protein OTX2; 99.4 4.1E-13 1.4E-17 107.4 7.2 61 348-411 7-67 (80)
38 3a02_A Homeobox protein arista 99.4 6.2E-13 2.1E-17 100.8 6.7 57 351-410 2-58 (60)
39 1nk2_P Homeobox protein VND; h 99.4 5.5E-13 1.9E-17 106.1 6.6 59 348-409 9-67 (77)
40 1zq3_P PRD-4, homeotic bicoid 99.4 4.9E-13 1.7E-17 104.0 5.9 59 348-409 2-60 (68)
41 2cue_A Paired box protein PAX6 99.4 4.8E-13 1.6E-17 107.1 5.8 59 348-409 7-65 (80)
42 2ly9_A Zinc fingers and homeob 99.4 1.5E-12 5.1E-17 102.4 8.3 65 349-416 7-71 (74)
43 2kt0_A Nanog, homeobox protein 99.4 9.2E-13 3.1E-17 106.0 7.1 60 348-410 22-81 (84)
44 1yz8_P Pituitary homeobox 2; D 99.4 2.1E-13 7.1E-18 106.0 3.2 61 348-411 3-63 (68)
45 2da5_A Zinc fingers and homeob 99.4 1.1E-12 3.6E-17 104.2 7.4 61 350-413 9-69 (75)
46 1b8i_A Ultrabithorax, protein 99.4 1E-12 3.4E-17 105.8 7.1 60 348-410 20-79 (81)
47 2m0c_A Homeobox protein arista 99.4 1.2E-12 4.2E-17 102.7 7.3 62 348-412 9-70 (75)
48 1puf_A HOX-1.7, homeobox prote 99.4 1.1E-12 3.6E-17 104.4 6.8 59 348-409 13-71 (77)
49 3a03_A T-cell leukemia homeobo 99.3 1.1E-12 3.7E-17 98.4 5.8 54 353-409 2-55 (56)
50 2hi3_A Homeodomain-only protei 99.3 1.2E-12 4.2E-17 103.1 6.2 59 349-410 3-62 (73)
51 1uhs_A HOP, homeodomain only p 99.3 1.5E-12 5.2E-17 102.1 6.4 59 350-410 3-61 (72)
52 2d5v_A Hepatocyte nuclear fact 99.3 1.7E-12 5.7E-17 116.5 7.3 64 347-413 96-159 (164)
53 3a01_A Homeodomain-containing 99.3 1.3E-12 4.5E-17 107.8 6.0 60 348-410 17-76 (93)
54 2cuf_A FLJ21616 protein; homeo 99.3 1.4E-12 4.8E-17 107.7 5.8 60 348-410 7-81 (95)
55 2r5y_A Homeotic protein sex co 99.3 2E-12 6.9E-17 105.2 6.4 61 347-410 27-87 (88)
56 3d1n_I POU domain, class 6, tr 99.3 2.3E-12 8E-17 114.6 7.1 58 348-408 93-150 (151)
57 2dmp_A Zinc fingers and homeob 99.3 4.8E-12 1.7E-16 103.8 8.0 60 351-413 16-75 (89)
58 3nar_A ZHX1, zinc fingers and 99.3 3.8E-12 1.3E-16 105.4 7.4 60 348-410 25-84 (96)
59 2ecb_A Zinc fingers and homeob 99.3 3.8E-12 1.3E-16 105.3 7.2 54 352-408 15-68 (89)
60 2e19_A Transcription factor 8; 99.3 5E-12 1.7E-16 98.2 7.2 58 351-411 6-63 (64)
61 3nau_A Zinc fingers and homeob 99.3 2.5E-12 8.7E-17 101.4 5.4 53 354-409 10-62 (66)
62 2cqx_A LAG1 longevity assuranc 99.3 3.1E-12 1.1E-16 101.3 5.7 62 350-414 10-72 (72)
63 1b72_A Protein (homeobox prote 99.3 3.2E-12 1.1E-16 105.9 5.9 60 347-409 33-92 (97)
64 1wh7_A ZF-HD homeobox family p 99.3 3.2E-12 1.1E-16 103.5 5.1 61 348-409 17-79 (80)
65 1e3o_C Octamer-binding transcr 99.2 9E-12 3.1E-16 112.0 7.5 60 348-410 101-160 (160)
66 2xsd_C POU domain, class 3, tr 99.2 9.5E-12 3.3E-16 112.7 7.1 64 347-413 98-161 (164)
67 1wi3_A DNA-binding protein SAT 99.2 1.8E-11 6E-16 97.5 7.0 66 347-414 6-71 (71)
68 1au7_A Protein PIT-1, GHF-1; c 99.2 1.7E-11 5.9E-16 108.8 7.7 59 348-409 87-145 (146)
69 1x2m_A LAG1 longevity assuranc 99.2 1.5E-11 5E-16 96.3 5.9 55 358-414 10-64 (64)
70 2l9r_A Homeobox protein NKX-3. 99.2 3.4E-11 1.2E-15 95.2 7.4 56 354-412 10-65 (69)
71 1lfb_A Liver transcription fac 99.2 2.8E-11 9.7E-16 101.7 6.3 64 345-411 6-90 (99)
72 3l1p_A POU domain, class 5, tr 99.1 2.8E-11 9.7E-16 108.3 4.7 59 348-409 96-154 (155)
73 2da6_A Hepatocyte nuclear fact 99.1 5E-11 1.7E-15 101.2 6.0 59 348-409 6-85 (102)
74 1mh3_A Maltose binding-A1 home 99.0 2.5E-10 8.5E-15 111.8 5.4 55 350-407 367-421 (421)
75 2h8r_A Hepatocyte nuclear fact 99.0 6.2E-10 2.1E-14 105.8 6.4 57 348-407 142-219 (221)
76 1ic8_A Hepatocyte nuclear fact 98.9 4.8E-10 1.7E-14 104.5 3.9 58 348-408 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.9 2.3E-09 7.9E-14 85.6 6.7 49 357-408 14-62 (71)
78 2nzz_A Penetratin conjugated G 95.6 0.0022 7.4E-08 45.2 0.0 18 393-410 1-18 (37)
79 2ys9_A Homeobox and leucine zi 95.1 0.012 4.2E-07 46.8 2.9 44 355-401 13-56 (70)
80 1hlv_A CENP-B, major centromer 65.3 15 0.0005 30.0 6.5 50 350-405 3-52 (131)
81 2glo_A Brinker CG9653-PA; prot 64.5 8.3 0.00028 27.9 4.3 49 351-403 2-50 (59)
82 1tc3_C Protein (TC3 transposas 56.9 10 0.00035 24.8 3.4 43 352-402 3-45 (51)
83 3hug_A RNA polymerase sigma fa 56.1 5.8 0.0002 31.1 2.3 47 354-408 37-83 (92)
84 2o8x_A Probable RNA polymerase 54.8 7.4 0.00025 28.1 2.6 50 353-410 14-63 (70)
85 2elh_A CG11849-PA, LD40883P; s 54.6 14 0.00049 28.7 4.4 47 350-404 18-64 (87)
86 1sse_B AP-1 like transcription 50.0 15 0.0005 30.2 3.8 37 148-187 12-48 (86)
87 3mzy_A RNA polymerase sigma-H 46.9 10 0.00034 31.1 2.4 47 354-409 109-155 (164)
88 2p7v_B Sigma-70, RNA polymeras 46.0 14 0.00047 27.2 2.8 53 354-410 5-57 (68)
89 1tty_A Sigma-A, RNA polymerase 44.0 15 0.00052 28.5 2.9 53 354-410 18-70 (87)
90 1ku3_A Sigma factor SIGA; heli 41.9 16 0.00056 27.1 2.7 51 353-407 9-59 (73)
91 2rnj_A Response regulator prot 40.6 44 0.0015 25.8 5.2 48 354-410 29-76 (91)
92 3c57_A Two component transcrip 39.1 30 0.001 27.3 4.0 50 353-411 26-75 (95)
93 1rp3_A RNA polymerase sigma fa 37.5 16 0.00053 32.0 2.3 48 353-408 186-233 (239)
94 1fse_A GERE; helix-turn-helix 37.2 41 0.0014 24.3 4.3 50 352-410 9-58 (74)
95 1x3u_A Transcriptional regulat 36.9 20 0.00068 26.6 2.5 47 355-410 17-63 (79)
96 1or7_A Sigma-24, RNA polymeras 36.3 20 0.0007 30.4 2.8 47 355-409 141-187 (194)
97 1je8_A Nitrate/nitrite respons 36.1 26 0.00089 26.9 3.1 48 354-410 21-68 (82)
98 1s7o_A Hypothetical UPF0122 pr 34.5 23 0.00077 29.4 2.7 47 354-408 22-68 (113)
99 2q1z_A RPOE, ECF SIGE; ECF sig 34.3 14 0.00048 31.3 1.4 48 354-409 135-182 (184)
100 1jko_C HIN recombinase, DNA-in 32.4 24 0.00083 23.4 2.1 42 353-402 4-45 (52)
101 1iuf_A Centromere ABP1 protein 32.1 82 0.0028 26.7 5.9 50 349-404 6-62 (144)
102 1p4w_A RCSB; solution structur 30.7 73 0.0025 25.7 5.1 49 352-409 32-80 (99)
103 3lsg_A Two-component response 29.2 83 0.0029 24.4 5.1 40 359-401 3-42 (103)
104 3bd1_A CRO protein; transcript 28.4 32 0.0011 25.6 2.4 23 381-403 14-36 (79)
105 1b72_A Protein (homeobox prote 28.2 12 0.00042 30.1 -0.0 36 387-422 2-37 (97)
106 2xi8_A Putative transcription 27.6 31 0.0011 24.0 2.1 23 381-403 17-39 (66)
107 2rn7_A IS629 ORFA; helix, all 27.6 1.4E+02 0.0047 23.4 6.2 52 352-404 4-56 (108)
108 2r1j_L Repressor protein C2; p 27.6 31 0.0011 24.1 2.1 23 381-403 21-43 (68)
109 1zug_A Phage 434 CRO protein; 26.9 31 0.0011 24.4 2.0 23 381-403 19-41 (71)
110 1xsv_A Hypothetical UPF0122 pr 26.8 28 0.00094 28.7 1.9 47 354-408 25-71 (113)
111 2k27_A Paired box protein PAX- 26.7 1.9E+02 0.0064 24.2 7.3 62 352-416 81-149 (159)
112 4a8j_C Elongator complex prote 25.3 25 0.00085 34.4 1.6 18 42-59 43-60 (280)
113 1xc0_A Pardaxin P-4, PA4; BEND 25.3 36 0.0012 22.8 1.8 22 176-197 5-26 (33)
114 1hlv_A CENP-B, major centromer 24.7 2.3E+02 0.0077 22.7 7.2 58 348-406 66-130 (131)
115 1adr_A P22 C2 repressor; trans 24.4 38 0.0013 24.3 2.1 23 381-403 21-43 (76)
116 3bs3_A Putative DNA-binding pr 24.3 39 0.0013 24.3 2.2 23 381-403 26-48 (76)
117 2jpc_A SSRB; DNA binding prote 24.3 57 0.0019 22.8 3.0 29 382-410 17-45 (61)
118 2b5a_A C.BCLI; helix-turn-heli 23.5 40 0.0014 24.3 2.1 23 381-403 26-48 (77)
119 1r69_A Repressor protein CI; g 23.1 42 0.0014 23.6 2.1 23 381-403 17-39 (69)
120 1l0o_C Sigma factor; bergerat 22.9 18 0.00061 31.6 0.0 46 354-407 198-243 (243)
121 2wiu_B HTH-type transcriptiona 22.8 52 0.0018 24.4 2.7 23 381-403 28-50 (88)
122 2jn6_A Protein CGL2762, transp 22.4 63 0.0021 25.1 3.2 46 353-404 4-49 (97)
123 3b7h_A Prophage LP1 protein 11 21.6 46 0.0016 24.0 2.1 22 382-403 24-45 (78)
124 2jqq_A Conserved oligomeric go 21.5 1.1E+02 0.0037 28.7 4.9 20 250-269 101-120 (204)
125 1y7y_A C.AHDI; helix-turn-heli 21.2 48 0.0016 23.6 2.1 22 381-402 29-50 (74)
126 2a6c_A Helix-turn-helix motif; 21.0 52 0.0018 24.8 2.3 22 382-403 35-56 (83)
127 1u78_A TC3 transposase, transp 20.9 1.4E+02 0.0047 23.9 5.1 52 351-409 57-111 (141)
128 3clo_A Transcriptional regulat 20.8 83 0.0028 28.8 4.1 49 353-410 196-244 (258)
129 3omt_A Uncharacterized protein 20.6 49 0.0017 23.9 2.0 21 382-402 25-45 (73)
130 3t72_q RNA polymerase sigma fa 20.2 69 0.0024 26.0 3.1 53 354-410 19-71 (99)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=137.24 Aligned_cols=63 Identities=41% Similarity=0.758 Sum_probs=59.4
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.++|+|+.|+++++.+|+.||..|..+|||+.++|..||..|||+..||.+||+|+|+|.|+.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 356778899999999999999999999999999999999999999999999999999999874
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.3e-17 Score=129.89 Aligned_cols=66 Identities=45% Similarity=0.842 Sum_probs=61.6
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
.+++|+.|++.++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|++....
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 466778999999999999999999999999999999999999999999999999999999987543
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2e-17 Score=129.33 Aligned_cols=61 Identities=41% Similarity=0.796 Sum_probs=54.0
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 014533 352 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 412 (423)
Q Consensus 352 rgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s 412 (423)
.|+||++++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|++...
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999997643
No 4
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=138.08 Aligned_cols=57 Identities=39% Similarity=0.683 Sum_probs=54.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.-||++++.+|+.||.+|..+|||++++|..||.+|||+.+||+|||+|+|+|.|++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 469999999999999999999999999999999999999999999999999999974
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=6.3e-17 Score=124.22 Aligned_cols=62 Identities=31% Similarity=0.583 Sum_probs=58.6
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.+++++.|++++..+|+.||..|..+|||+.+++..||..+||+..||.+||+|+|.|.||.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45778899999999999999999999999999999999999999999999999999999874
No 6
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.67 E-value=1.3e-16 Score=129.07 Aligned_cols=64 Identities=22% Similarity=0.438 Sum_probs=58.2
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 014533 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 412 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s 412 (423)
.+++..|+++++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+...+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 4455569999999999999999999999999999999999999999999999999999997654
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=1.4e-16 Score=120.88 Aligned_cols=59 Identities=25% Similarity=0.529 Sum_probs=56.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 351 KrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
|++.|++++..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46789999999999999999999999999999999999999999999999999999875
No 8
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=1.6e-16 Score=125.12 Aligned_cols=65 Identities=31% Similarity=0.579 Sum_probs=61.0
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
+|+|+.|+++++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 57788999999999999999999999999999999999999999999999999999999876643
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.64 E-value=2.2e-16 Score=127.91 Aligned_cols=63 Identities=32% Similarity=0.608 Sum_probs=59.0
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
+|+|..|+++++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 578889999999999999999999999999999999999999999999999999999998653
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.63 E-value=3.9e-16 Score=127.00 Aligned_cols=61 Identities=25% Similarity=0.523 Sum_probs=57.4
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
++|+|..|+++++.+|+.||..|+.+|||+..+|..||..+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 5566778999999999999999999999999999999999999999999999999999763
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.3e-14 Score=117.22 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=55.2
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 350 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
.++++|+++++.+|+.||.. +|||+..+|..||..|||+..||.+||+|+|.|.|+.+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 56788999999999999998 899999999999999999999999999999999988653
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.2e-14 Score=112.09 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=59.7
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..++++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~G 70 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSSG 70 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCCC
Confidence 4667789999999999999998 899999999999999999999999999999999999888764
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=112.41 Aligned_cols=64 Identities=22% Similarity=0.446 Sum_probs=59.8
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~G 70 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSSG 70 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCCC
Confidence 4677789999999999999998 899999999999999999999999999999999999888764
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=112.60 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=59.6
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ssg 70 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSSG 70 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCCC
Confidence 4667789999999999999987 899999999999999999999999999999999999988764
No 15
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.51 E-value=1.7e-14 Score=109.46 Aligned_cols=57 Identities=18% Similarity=0.364 Sum_probs=47.8
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 407 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 407 (423)
.+|+|..|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4567789999999999999998 79999999999999999999999999999999864
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.9e-14 Score=112.43 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=59.7
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
.+++|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~sG 70 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSSG 70 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCCC
Confidence 4567789999999999999988 899999999999999999999999999999999999888764
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=113.43 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=59.5
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++.+
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~sG 80 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSSG 80 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCCC
Confidence 4667789999999999999998 799999999999999999999999999999999999887754
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.49 E-value=4.4e-14 Score=110.06 Aligned_cols=64 Identities=22% Similarity=0.446 Sum_probs=59.2
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~g 70 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSSG 70 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccCC
Confidence 4667789999999999999998 899999999999999999999999999999999999877653
No 19
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5e-14 Score=112.85 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=59.7
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ssg 80 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSSG 80 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCCC
Confidence 4567789999999999999998 899999999999999999999999999999999999988764
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.48 E-value=5.5e-14 Score=106.98 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=52.9
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 35678889999999999999998 8999999999999999999999999999999998874
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.47 E-value=7.6e-14 Score=107.72 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=56.8
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
.+|+|..|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 4677889999999999999998 899999999999999999999999999999999988653
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-14 Score=114.60 Aligned_cols=66 Identities=12% Similarity=0.254 Sum_probs=58.4
Q ss_pred hccCCCCCChHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSH-SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H-~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
++|+|..|+.++..+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCCC
Confidence 45677789999999999999985 4459999999999999999999999999999999999855443
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.46 E-value=7.1e-14 Score=108.90 Aligned_cols=63 Identities=29% Similarity=0.510 Sum_probs=58.1
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPSS 69 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcccC
Confidence 4667789999999999999998 89999999999999999999999999999999999976543
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=1.3e-13 Score=103.68 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=53.8
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467789999999999999998 899999999999999999999999999999999875
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.43 E-value=1.5e-13 Score=105.23 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=54.4
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4677889999999999999998 8999999999999999999999999999999998874
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.43 E-value=1.6e-13 Score=104.00 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=53.9
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 467789999999999999998 8999999999999999999999999999999998763
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.43 E-value=5.6e-14 Score=112.67 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=56.7
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
.++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 35667789999999999999998 899999999999999999999999999999999987543
No 28
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.42 E-value=1.9e-13 Score=110.31 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=57.3
Q ss_pred hccCCCCCChHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQS-HSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~-H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
+||+|..|+.+++..|+.+|.. ++.+|||+..++..||..+||++.||.+||+|+|.|.+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5677789999999999999986 6789999999999999999999999999999999998864
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.42 E-value=3.1e-13 Score=106.64 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=57.3
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 412 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s 412 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4567789999999999999998 8999999999999999999999999999999999987554
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=105.58 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=56.0
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
+|+|..|++++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567889999999999999976 999999999999999999999999999999999988654
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=101.67 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=53.2
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 407 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 407 (423)
++|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4677889999999999999986 89999999999999999999999999999999865
No 32
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.42 E-value=1.6e-13 Score=106.94 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=58.2
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 5778889999999999999998 89999999999999999999999999999999999866543
No 33
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.42 E-value=2.7e-13 Score=103.45 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=51.9
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 4567789999999999999998 8999999999999999999999999999999998874
No 34
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=108.56 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=55.5
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 5677889999999999999998 8899999999999999999999999999999999873
No 35
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.5e-13 Score=106.33 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=56.6
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 350 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
+.|.+|++++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+......
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~ 71 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRS 71 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCC
Confidence 45678999999999999998 899999999999999999999999999999999999765443
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.40 E-value=3.6e-13 Score=104.81 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=56.8
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5677889999999999999998 899999999999999999999999999999999988653
No 37
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=4.1e-13 Score=107.38 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=56.4
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4567789999999999999998 899999999999999999999999999999999888544
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.38 E-value=6.2e-13 Score=100.81 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=49.9
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 351 KrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 3578999999999999988 89999999999999999999999999999999998753
No 39
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.38 E-value=5.5e-13 Score=106.08 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=54.7
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 4566778999999999999998 8899999999999999999999999999999998863
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.37 E-value=4.9e-13 Score=104.03 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=55.2
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4677889999999999999987 8999999999999999999999999999999999874
No 41
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=4.8e-13 Score=107.13 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=55.1
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 4677789999999999999987 8999999999999999999999999999999998873
No 42
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=102.40 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=59.1
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCCcc
Q 014533 349 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTV 416 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~~~ 416 (423)
++.|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....+..
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~ 71 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLH 71 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCCTT
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCCCC
Confidence 466789999999999999998 89999999999999999999999999999999999977665543
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.36 E-value=9.2e-13 Score=105.96 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=55.8
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4667789999999999999998 88999999999999999999999999999999988754
No 44
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.36 E-value=2.1e-13 Score=106.01 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=56.4
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4677889999999999999987 999999999999999999999999999999999887654
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=104.19 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=55.7
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 350 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
+|+.+|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 45667999999999999998 89999999999999999999999999999999998866543
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.36 E-value=1e-12 Score=105.75 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=53.7
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 5667889999999999999998 88999999999999999999999999999999998864
No 47
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=102.66 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=56.5
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 412 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s 412 (423)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 4556778999999999999998 8899999999999999999999999999999999986543
No 48
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.35 E-value=1.1e-12 Score=104.44 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=55.1
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999998 8899999999999999999999999999999998874
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=98.44 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=49.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
..|++++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 36899999999999998 8999999999999999999999999999999998864
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=1.2e-12 Score=103.07 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=54.4
Q ss_pred ccCCCCCChHHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 349 KRRAGKLPGDTTSVLKSWWQ-SHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf~-~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.++|..|+.++..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999998 5 78999999999999999999999999999999988754
No 51
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.5e-12 Score=102.14 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=53.6
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 350 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
++|..|+.++..+|+.+|.. .+|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 56788999999999999972 178999999999999999999999999999999988854
No 52
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.32 E-value=1.7e-12 Score=116.51 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=54.2
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
..+|+|..|+..++.+|+.||.. +|||+..+|..||..+||+..||.+||+|+|+|.|+.-...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 35677889999999999999999 79999999999999999999999999999999999865543
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.32 E-value=1.3e-12 Score=107.84 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=55.9
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 4667789999999999999998 89999999999999999999999999999999988854
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=1.4e-12 Score=107.71 Aligned_cols=60 Identities=18% Similarity=0.374 Sum_probs=55.7
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcccCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~Tg---------------Ls~kQV~NWFiN~RkR~kK~n 410 (423)
++|+|..|++.++.+|+.||.. +|||+..++..||..+| |+..||.+||+|+|+|.|+..
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 4567779999999999999999 89999999999999999 999999999999999998843
No 55
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.31 E-value=2e-12 Score=105.21 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=54.0
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
..+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35677889999999999999987 89999999999999999999999999999999998754
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=114.55 Aligned_cols=58 Identities=17% Similarity=0.444 Sum_probs=54.2
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4556678999999999999998 899999999999999999999999999999999886
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.8e-12 Score=103.79 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=54.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 351 KrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
|..+|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 3345999999999999998 89999999999999999999999999999999998866544
No 58
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=105.43 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=55.1
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.+|+|..|++.+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4567789999999999999998 88999999999999999999999999999999999865
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=3.8e-12 Score=105.34 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=50.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 352 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 352 rgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
...|+.++..+|+.+|.. +|||+..+|..||..+||+..||.+||+|+|.|.++
T Consensus 15 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred hccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 348999999999999998 889999999999999999999999999999988766
No 60
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5e-12 Score=98.15 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=52.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 351 KrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
.+..+.+++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++-.+
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~~ 63 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCCC
Confidence 4567789999999999976 899999999999999999999999999999999988554
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=101.41 Aligned_cols=53 Identities=26% Similarity=0.476 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
+-++++...|+..|.. +|||+..++.+||..|||+..||.+||+|+|.|.|+.
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3478999999999999 8899999999999999999999999999999998763
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=3.1e-12 Score=101.31 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=56.1
Q ss_pred cCCCCCChHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 350 RRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf-~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
++++.++.++..+|+..| .. ++||+..++..||..+||++.||.+||+|+|.|.|+..++.+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~g 72 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSSG 72 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCCC
Confidence 455678888999999999 76 889999999999999999999999999999999999887653
No 63
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=3.2e-12 Score=105.90 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=53.3
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
..+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 35667889999999999999987 8999999999999999999999999999999998874
No 64
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.26 E-value=3.2e-12 Score=103.49 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=54.6
Q ss_pred hccCCCCCChHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSH--SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H--~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
+||+|..|+.+++.+|+ -|..+ +.+|||+..++..||..+||++.||.+||+|+|.+.+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 56777899999999999 57764 448999999999999999999999999999999998864
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.24 E-value=9e-12 Score=111.97 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=54.4
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.+
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 5677889999999999999998 89999999999999999999999999999999999853
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.23 E-value=9.5e-12 Score=112.65 Aligned_cols=64 Identities=17% Similarity=0.406 Sum_probs=52.5
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 413 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~ 413 (423)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 35667789999999999999998 89999999999999999999999999999999999987654
No 67
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=1.8e-11 Score=97.51 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=59.9
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 347 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 347 ~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
.+||.|+.|+.++..+|+..|.. .+|||+.++++.||.+|||++.+|..||+|+|--.+++-++++
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~~ 71 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSSG 71 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCCC
Confidence 35778889999999999999986 3679999999999999999999999999999999999887753
No 68
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.21 E-value=1.7e-11 Score=108.83 Aligned_cols=59 Identities=19% Similarity=0.431 Sum_probs=54.2
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4566789999999999999998 8999999999999999999999999999999998874
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.21 E-value=1.5e-11 Score=96.32 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 014533 358 DTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 414 (423)
Q Consensus 358 ea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s~~ 414 (423)
....+|+..|.. .++||+..++..||.++||++.||.+||+|+|.+.|+..|+++
T Consensus 10 ~~~~~LE~~F~~--~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~~ 64 (64)
T 1x2m_A 10 QPNAILEKVFTA--ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSSG 64 (64)
T ss_dssp CHHHHHHHHHHT--TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred hHHHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 468999999943 2679999999999999999999999999999999999988864
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.19 E-value=3.4e-11 Score=95.16 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 412 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~s 412 (423)
.++..+...|+.+|.. +|||+..+|..||..+||+..||.+||+|+|.|.|+...+
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 5788999999999998 8899999999999999999999999999999999887654
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.17 E-value=2.8e-11 Score=101.71 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=52.7
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhh
Q 014533 345 EILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQR 403 (423)
Q Consensus 345 e~~kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~------------------Tg---Ls~kQV~NWFiN~R 403 (423)
...++|+|..|++.+..+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3445667789999999999999987 899999999999999 77 99999999999999
Q ss_pred hhcccCCC
Q 014533 404 KRNWHSNP 411 (423)
Q Consensus 404 kR~kK~n~ 411 (423)
++.+....
T Consensus 83 ~k~k~k~~ 90 (99)
T 1lfb_A 83 KEEAFRHK 90 (99)
T ss_dssp HTTSCCC-
T ss_pred HHHHHhch
Confidence 99887653
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.13 E-value=2.8e-11 Score=108.34 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=54.4
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5667788999999999999976 8999999999999999999999999999999999875
No 73
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=5e-11 Score=101.20 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=54.3
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhhc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 406 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~T---------------------gLs~kQV~NWFiN~RkR~ 406 (423)
++|+|..|++.+..+|+.+|.. +|||+..+|..||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566778999999999999998 8899999999999999 799999999999999998
Q ss_pred ccC
Q 014533 407 WHS 409 (423)
Q Consensus 407 kK~ 409 (423)
++.
T Consensus 83 kr~ 85 (102)
T 2da6_A 83 AFR 85 (102)
T ss_dssp HHH
T ss_pred HHh
Confidence 773
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.99 E-value=2.5e-10 Score=111.75 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=50.7
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 014533 350 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 407 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 407 (423)
+.+..|.+.++..|+.+|.. +|||++.+|..||++|||+++||++||+|+|+|.|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34467999999999999988 88999999999999999999999999999999976
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.95 E-value=6.2e-10 Score=105.78 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=52.3
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 406 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~Tg---------------------Ls~kQV~NWFiN~RkR~ 406 (423)
++|.|.+|++.++.+|+.||.. +|||+..+|..||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 5666778999999999999998 99999999999999998 89999999999999975
Q ss_pred c
Q 014533 407 W 407 (423)
Q Consensus 407 k 407 (423)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.91 E-value=4.8e-10 Score=104.48 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=52.6
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 406 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~Tg---------------------Ls~kQV~NWFiN~RkR~ 406 (423)
++|+|..|++.++.+|+.+|.. +|||+..+|..||..|+ |+..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 4667789999999999999998 88999999999999999 99999999999999998
Q ss_pred cc
Q 014533 407 WH 408 (423)
Q Consensus 407 kK 408 (423)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=85.59 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 357 GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 357 Kea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
|+++.+|+..|.. +|||+.+++..||..+||+.+.|..||+|+|.+..-
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~~ 62 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYS 62 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccccC
Confidence 7889999999999 999999999999999999999999999999986543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.56 E-value=0.0022 Score=45.20 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.8
Q ss_pred hhhhhhhhhhhhhcccCC
Q 014533 393 KQINNWFINQRKRNWHSN 410 (423)
Q Consensus 393 kQV~NWFiN~RkR~kK~n 410 (423)
.||.+||+|+|.|.||..
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 489999999999998853
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.08 E-value=0.012 Score=46.80 Aligned_cols=44 Identities=27% Similarity=0.522 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 014533 355 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 401 (423)
Q Consensus 355 lpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN 401 (423)
.++..+++|+++|..|. ...+++-..|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~hk---~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQ---QLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTC---CCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhc---ccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 45567899999999977 788999999999999999999999963
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=65.27 E-value=15 Score=30.05 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=38.8
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhh
Q 014533 350 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR 405 (423)
++|..|+.+.+..+-.++.. .++++. ..+|+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35678999998877777755 455542 368999999999999999887664
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=64.45 E-value=8.3 Score=27.91 Aligned_cols=49 Identities=6% Similarity=0.150 Sum_probs=32.9
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 014533 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 351 KrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~R 403 (423)
++++|+.+.+......+... ++.......+|+.+|++...|.+|....+
T Consensus 2 ~r~~ys~efK~~~~~~~~~g----~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRND----NDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHC----TTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCCcCCHHHHHHHHHHHHcC----CCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45678988876665554431 11112256899999999999999965443
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.89 E-value=10 Score=24.79 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 014533 352 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 402 (423)
Q Consensus 352 rgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~ 402 (423)
+..|+.+.+..+...+... + ...++|+.+|++..-|..|+...
T Consensus 3 ~~~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 3 GSALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp SCCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 3467877765444444431 1 25579999999999999998643
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.10 E-value=5.8 Score=31.05 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
.||...+.+|.-.|...+ .-.++|+.+|++..-|..+....|++.++
T Consensus 37 ~L~~~~r~vl~l~~~~g~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--------STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488889899877555422 24579999999999999999999999876
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.82 E-value=7.4 Score=28.12 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
..||...+.+|...|...+ .-.++|+.+|++...|..+....|++.++..
T Consensus 14 ~~L~~~~r~il~l~~~~g~--------s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGL--------SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3589999999987654422 2357999999999999999999999988754
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=54.60 E-value=14 Score=28.74 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=32.6
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 014533 350 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 404 (423)
Q Consensus 350 RKrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~Rk 404 (423)
+++.+|+.+.+......+.. . + -...+|+.+|++...|..|....+.
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g---~----s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-G---E----SKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-T---C----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-C---C----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 34568998886555455433 1 1 2558899999999999999865443
No 86
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=49.95 E-value=15 Score=30.24 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=23.5
Q ss_pred cccccCCCCCCcccccCCCcccchhhHHHHHHHhhCCChH
Q 014533 148 NNASTNNKSEGVVVESGADGVVNWQNARYKAEILSHPLYE 187 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~e~e~lKAkI~sHPLYp 187 (423)
|++-.++..++||.+..| .++. ...+=.+|.+||+|.
T Consensus 12 ~~~~~~~~~~~vvps~~g-~lL~--c~~iWd~I~shP~~~ 48 (86)
T 1sse_B 12 NNGNDNDNDNDVVPSKEG-SLLR--CSEIWDRITTHPKYS 48 (86)
T ss_dssp CCCCCCCCCCCSSCCSSC-CEEC--HHHHHHHHHTCSCCS
T ss_pred cccccccccCeeeeCCCc-ceec--HHHHHHHHhcCcchh
Confidence 444444556677765433 4443 345668999999998
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=46.89 E-value=10 Score=31.14 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=36.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.||+..+.+|. .|... | .-.++|+.+|++...|.++....|++.++.
T Consensus 109 ~L~~~~r~v~~-~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG----Y----SYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 37888888988 33331 2 235799999999999999999999998763
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.98 E-value=14 Score=27.16 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.||+..+.+|...|.-.....+ .-.++|+.+|++...|..+....+++.++..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5888899998776511000111 2357999999999999999999999998754
No 89
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=43.99 E-value=15 Score=28.46 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.||...+.+|...|.-.-... -.-.++|..+|++...|..+...++++.++..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~----~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP----KTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 488889999977664100011 22357899999999999999999999998754
No 90
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=41.86 E-value=16 Score=27.10 Aligned_cols=51 Identities=14% Similarity=-0.034 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 407 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 407 (423)
..||+..+.+|...|.-.....+ .-.++|+.+|++...|..+....+++.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35899999999877641000111 2248999999999999999999999998
No 91
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.63 E-value=44 Score=25.84 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.||...+.+|.-+ ..- |.. .++|+.+|++..-|.++....|++.+..+
T Consensus 29 ~Lt~~e~~vl~l~-~~g----~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 29 MLTEREMEILLLI-AKG----YSN----QEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GCCSHHHHHHHHH-HTT----CCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHHH-HcC----CCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 5888888998774 332 222 37899999999999999999999988754
No 92
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.08 E-value=30 Score=27.32 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 411 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n~ 411 (423)
..|++..+.+|...+.. | .-.++|+.+|++..-|.++....|++.+..+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG-----L----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHHHTT-----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 35888899999875332 1 22689999999999999999999999988654
No 93
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.49 E-value=16 Score=32.04 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
..||...+.+|...|... | .-.++|+.+|++...|..+...+|++.++
T Consensus 186 ~~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE----L----PAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC----C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC----C----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 358999999998776542 2 23479999999999999999999999876
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.24 E-value=41 Score=24.26 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=39.0
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 352 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 352 rgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
...|++..+.+|..++.. + .-.++|+.+|++..-|..++...+++.+..+
T Consensus 9 ~~~L~~~e~~il~~~~~g-----~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELLVQD-----K----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHHTTT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHcC-----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 457999999999774221 2 2357999999999999999999998887643
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.91 E-value=20 Score=26.56 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 355 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 355 lpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
||+..+.+|..++.. + .-.++|+.+|++...|..++...+++.+..+
T Consensus 17 L~~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVVAG-----L----PNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHTTT-----C----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 566777888664221 2 2247999999999999999999999988754
No 96
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.34 E-value=20 Score=30.44 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 355 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 355 lpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
||...+.+|.-.|...+ + -.++|+.+|++...|.++....|++.++.
T Consensus 141 L~~~~r~vl~l~~~~g~----s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL----S----YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTCC----C----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC----C----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 78888888876554422 2 24799999999999999999999998864
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.07 E-value=26 Score=26.91 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.|+...+.+|..++.. + .-.++|+.+|++..-|.++....|++.+..+
T Consensus 21 ~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLIAQG-----L----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHHTTT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4888888888774221 2 3458999999999999999999999987754
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=34.47 E-value=23 Score=29.41 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
.||+..+.++...|...+ .-.++|+.+|++..-|..|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~--------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--------SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--------CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488889999887665422 23579999999999999999999988765
No 99
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=34.26 E-value=14 Score=31.27 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
.||...+.+|.-.|...+ +| .++|+.+|++...|.++....|++.++.
T Consensus 135 ~L~~~~r~vl~l~~~~g~--s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDL--TH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSCC--SS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 388889999987665533 33 2689999999999999999999998763
No 100
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=32.43 E-value=24 Score=23.39 Aligned_cols=42 Identities=7% Similarity=0.152 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 402 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~ 402 (423)
.+|+.+....+...+... + ....+|+.+|++..-|..|+...
T Consensus 4 ~~~~~~~~~~i~~l~~~g----~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKG----H----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp CSSCTTHHHHHHHHHHTT----C----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 456666555554444431 1 24689999999999999998643
No 101
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=32.14 E-value=82 Score=26.69 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=38.3
Q ss_pred ccCCCCCChHHHHHHHHHH-HhcCCCCCCCHHHHHHHHH----Hh--CCChhhhhhhhhhhhh
Q 014533 349 KRRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQ----ET--GLQLKQINNWFINQRK 404 (423)
Q Consensus 349 kRKrgklpKea~~iLk~Wf-~~H~~~PYPSe~eK~~LA~----~T--gLs~kQV~NWFiN~Rk 404 (423)
+++|..|+-+++..|..|+ .. +|-.+.. .||+ ++ +++...|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5678899999999999988 44 5555544 4555 77 7899999999987544
No 102
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=30.73 E-value=73 Score=25.66 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 014533 352 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 409 (423)
Q Consensus 352 rgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~ 409 (423)
...||+..+.+|.-++.- + .-.++|+.+|++..-|.++..+.+++..-.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G-~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG-F--------LVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT-C--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHHHHcC-C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 467999999999765432 2 126899999999999999999999887654
No 103
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.24 E-value=83 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 014533 359 TTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 401 (423)
Q Consensus 359 a~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN 401 (423)
....+..|...|+..|-++. ..||+.+|++...+...|.-
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHHH
Confidence 45667788888887755554 45888889998888888764
No 104
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=28.41 E-value=32 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
...||+.+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998754
No 105
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=28.18 E-value=12 Score=30.08 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=8.8
Q ss_pred HhCCChhhhhhhhhhhhhhcccCCCCCCccchhccc
Q 014533 387 ETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRK 422 (423)
Q Consensus 387 ~TgLs~kQV~NWFiN~RkR~kK~n~s~~~~~~s~~~ 422 (423)
+.+.+..+|--||.+.|...+....+.......+|+
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~~~~~~~~~rr~ 37 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGL 37 (97)
T ss_dssp ------CCCCGGGGC--------------------C
T ss_pred CCCCCCcccccccccccCCCCCCCCCCCCCCCCCCC
Confidence 356778889999999998877654444433334433
No 106
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=27.61 E-value=31 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..+||+.+|++...|..|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998653
No 107
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=27.61 E-value=1.4e+02 Score=23.42 Aligned_cols=52 Identities=6% Similarity=0.155 Sum_probs=33.0
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhhhh
Q 014533 352 AGKLPGDTTSVLKSWWQSHSKWPYPTE-EDKARLVQETGLQLKQINNWFINQRK 404 (423)
Q Consensus 352 rgklpKea~~iLk~Wf~~H~~~PYPSe-~eK~~LA~~TgLs~kQV~NWFiN~Rk 404 (423)
+.+|+.+.+...-..+..+. .=|++. .-...+|..+|++...|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45788887654444333210 002332 35678999999999999999765443
No 108
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=27.61 E-value=31 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..+||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45799999999999999998743
No 109
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=26.94 E-value=31 Score=24.43 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..+||+.+|++...|..|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 110
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.76 E-value=28 Score=28.72 Aligned_cols=47 Identities=4% Similarity=0.029 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 408 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK 408 (423)
.||...+.+|...|...+ .-.++|+.+|++..-|..++...|++.++
T Consensus 25 ~L~~~~r~vl~l~~~~g~--------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY--------SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC--------CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 388889999887655422 23579999999999999999999998875
No 111
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.71 E-value=1.9e+02 Score=24.20 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHh------CCChhhhhhhhhhhhhhcccCCCCCCcc
Q 014533 352 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKAR-LVQET------GLQLKQINNWFINQRKRNWHSNPSTSTV 416 (423)
Q Consensus 352 rgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~-LA~~T------gLs~kQV~NWFiN~RkR~kK~n~s~~~~ 416 (423)
+.+++.+....+..++.+ .|.-+..+... |.+.. .++...|..|+...+..-.+.-...+++
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~~~ 149 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGAP 149 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCCCC
Confidence 446777788888888876 34445444332 32221 4899999999987776655544444443
No 112
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=25.35 E-value=25 Score=34.43 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=14.6
Q ss_pred cccCCCCchhhHHHHHhh
Q 014533 42 SIETTAPNWLNSALLRSQ 59 (423)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ 59 (423)
...++.|+||.++++-..
T Consensus 43 ~~~gTsp~WLin~lves~ 60 (280)
T 4a8j_C 43 HQSCTQPLWMINALVETH 60 (280)
T ss_dssp ECTTSCCHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHH
Confidence 346778999999999864
No 113
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=25.28 E-value=36 Score=22.78 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=17.5
Q ss_pred HHHHHhhCCChHHHHHHHHhhh
Q 014533 176 YKAEILSHPLYEQLLSAHVACL 197 (423)
Q Consensus 176 lKAkI~sHPLYp~LL~AyIdCl 197 (423)
+-.||++-|||.-||+|--..+
T Consensus 5 lipkiissplfktllsavgsal 26 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHT
T ss_pred hhhHHHccHHHHHHHHHHHHHh
Confidence 3468999999999998865544
No 114
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=24.72 E-value=2.3e+02 Score=22.71 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=39.5
Q ss_pred hccCCCCCChHHHHHHHHHHHhcC--CCCCCCHHHHH----HHHHHhCCChhh-hhhhhhhhhhhc
Q 014533 348 RKRRAGKLPGDTTSVLKSWWQSHS--KWPYPTEEDKA----RLVQETGLQLKQ-INNWFINQRKRN 406 (423)
Q Consensus 348 kkRKrgklpKea~~iLk~Wf~~H~--~~PYPSe~eK~----~LA~~TgLs~kQ-V~NWFiN~RkR~ 406 (423)
+++.+..+..+.-..|..|+.... .-| |+...-. .|+...|++.-. =..|+.+-.+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 344455677888999999998643 456 7876654 455566765322 367999888886
No 115
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.42 E-value=38 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..+||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987643
No 116
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.34 E-value=39 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..+||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998654
No 117
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.29 E-value=57 Score=22.83 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=25.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 382 ARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 382 ~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.++|+.+|++..-|.++..+.+++.+..+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 47999999999999999999999887654
No 118
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.50 E-value=40 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
...||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 34799999999999999997653
No 119
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.09 E-value=42 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..+||+.+|++...|..|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987754
No 120
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=22.87 E-value=18 Score=31.58 Aligned_cols=46 Identities=7% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 407 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 407 (423)
.||...+.+|...|.. .-.-.++|+.+|++...|..++..+|++.|
T Consensus 198 ~L~~~~r~vl~l~~~~--------g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYK--------DQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhc--------CCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 4777788888765443 233458999999999999999999888764
No 121
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=22.76 E-value=52 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..+||+.+|++...|..|..+.+
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998744
No 122
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.41 E-value=63 Score=25.05 Aligned_cols=46 Identities=9% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 404 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~Rk 404 (423)
++|+.+.+...-..+.... ..-...+|+.+|++...|..|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~------g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD------GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG------GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcC------CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 5688887655544443210 113568999999999999999865443
No 123
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.59 E-value=46 Score=24.03 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 014533 382 ARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 382 ~~LA~~TgLs~kQV~NWFiN~R 403 (423)
..||+.+|++...|..|..+.+
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998765
No 124
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.46 E-value=1.1e+02 Score=28.67 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.0
Q ss_pred HHHHHhhhhhHHHHHhhhhC
Q 014533 250 AMEAVMACWEIEQSLQSLTG 269 (423)
Q Consensus 250 f~EA~~Fc~~IEsQL~sL~g 269 (423)
+.|.+.+++++...|.++|+
T Consensus 101 Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 101 LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46888999999999999997
No 125
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.23 E-value=48 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 014533 381 KARLVQETGLQLKQINNWFINQ 402 (423)
Q Consensus 381 K~~LA~~TgLs~kQV~NWFiN~ 402 (423)
..+||+.+|++...|..|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 3479999999999999998765
No 126
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=21.03 E-value=52 Score=24.78 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 014533 382 ARLVQETGLQLKQINNWFINQR 403 (423)
Q Consensus 382 ~~LA~~TgLs~kQV~NWFiN~R 403 (423)
.+||+.+|++...|+.|..+++
T Consensus 35 ~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998765
No 127
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.90 E-value=1.4e+02 Score=23.92 Aligned_cols=52 Identities=13% Similarity=-0.052 Sum_probs=31.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC--CChhhhhhhhhhhhh-hcccC
Q 014533 351 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG--LQLKQINNWFINQRK-RNWHS 409 (423)
Q Consensus 351 KrgklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~Tg--Ls~kQV~NWFiN~Rk-R~kK~ 409 (423)
++.+++.+....+..+ .. .|.-+. .+|+...| ++..-|..|+..... +.+++
T Consensus 57 r~~~l~~~~~~~i~~~-~~---~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~~~~~k~ 111 (141)
T 1u78_A 57 RRKALSVRDERNVIRA-AS---NSCKTA---RDIRNELQLSASKRTILNVIKRSGVIVRQKL 111 (141)
T ss_dssp CCCSSCHHHHHHHHHH-HH---HCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-------
T ss_pred CCCcCCHHHHHHHHHH-Hh---CCCCCH---HHHHHHHCCCccHHHHHHHHHHCCCceeeec
Confidence 3456888777766665 33 343343 35777778 799999999976554 44443
No 128
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.75 E-value=83 Score=28.82 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=40.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 353 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 353 gklpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
..||...+.+|.-.+ +- + .-.++|+.+|++..-|.+...+.|++.+..+
T Consensus 196 ~~L~~~erevl~L~~-~G----~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR-KG----L----SSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH-TT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH-cC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 569999999998864 31 2 2357899999999999999999999998864
No 129
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.56 E-value=49 Score=23.94 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 014533 382 ARLVQETGLQLKQINNWFINQ 402 (423)
Q Consensus 382 ~~LA~~TgLs~kQV~NWFiN~ 402 (423)
.+||+.+|++...|..|..++
T Consensus 25 ~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999875
No 130
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.23 E-value=69 Score=26.01 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 014533 354 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 410 (423)
Q Consensus 354 klpKea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TgLs~kQV~NWFiN~RkR~kK~n 410 (423)
.||+..+.++.-.|...-..+ -.-.++|+.+|++...|.+....++++.++..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~----~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTD----YTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 488888888877664211011 23357899999999999999999999988754
Done!