Query 014534
Match_columns 423
No_of_seqs 222 out of 2347
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 7.7E-74 2.6E-78 554.9 31.0 371 27-422 9-387 (389)
2 4d9s_A UVB-resistance protein 100.0 1.8E-70 6.3E-75 534.0 38.3 364 11-401 10-378 (406)
3 3mvd_K Regulator of chromosome 100.0 7.4E-70 2.5E-74 533.5 40.7 386 13-422 20-418 (423)
4 1a12_A RCC1, regulator of chro 100.0 4.9E-70 1.7E-74 532.8 39.2 378 22-422 13-409 (413)
5 3of7_A Regulator of chromosome 100.0 8.9E-69 3E-73 532.0 36.1 371 27-422 20-450 (473)
6 4d9s_A UVB-resistance protein 100.0 1.2E-64 4E-69 493.1 37.2 327 71-422 16-347 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 2.6E-62 8.9E-67 474.1 30.1 328 15-357 51-385 (389)
8 1a12_A RCC1, regulator of chro 100.0 2E-60 6.7E-65 464.9 32.8 331 17-361 59-412 (413)
9 3mvd_K Regulator of chromosome 100.0 3E-59 1E-63 458.3 32.5 322 70-422 23-364 (423)
10 3of7_A Regulator of chromosome 100.0 3.9E-58 1.3E-62 455.6 33.3 332 16-357 66-448 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 1.1E-52 3.8E-57 387.4 31.5 270 39-422 3-272 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 6.5E-48 2.2E-52 355.6 28.1 251 18-362 25-276 (282)
13 1p22_A F-BOX/WD-repeat protein 97.6 0.051 1.7E-06 52.0 27.3 237 71-366 174-412 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.21 7E-06 47.7 29.3 187 72-316 201-391 (445)
15 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.27 9.4E-06 46.9 35.3 257 29-366 130-389 (445)
16 3k26_A Polycomb protein EED; W 96.7 0.35 1.2E-05 44.2 24.5 263 71-366 70-364 (366)
17 1p22_A F-BOX/WD-repeat protein 96.3 0.79 2.7E-05 43.5 31.7 227 72-366 135-363 (435)
18 4aez_A CDC20, WD repeat-contai 96.3 0.78 2.7E-05 43.0 24.9 138 31-204 106-247 (401)
19 4gbf_A Phikz131; 7-bladed beta 96.1 0.014 4.7E-07 50.4 6.9 72 71-155 309-380 (400)
20 4gbf_A Phikz131; 7-bladed beta 95.6 0.035 1.2E-06 47.9 7.6 72 177-270 309-380 (400)
21 3odt_A Protein DOA1; ubiquitin 95.4 1.3 4.4E-05 39.2 29.1 256 28-366 29-294 (313)
22 2zwa_A Leucine carboxyl methyl 93.4 2.4 8.1E-05 43.3 16.6 19 297-315 598-616 (695)
23 1gxr_A ESG1, transducin-like e 93.1 4.4 0.00015 36.0 36.1 268 32-366 15-294 (337)
24 1sq9_A Antiviral protein SKI8; 93.0 5.3 0.00018 36.6 24.3 109 29-150 27-156 (397)
25 3mmy_A MRNA export factor; mRN 93.0 4.9 0.00017 36.2 26.2 194 70-316 39-247 (368)
26 1gxr_A ESG1, transducin-like e 92.4 5.6 0.00019 35.3 30.9 223 71-365 98-334 (337)
27 3v7d_B Cell division control p 92.2 8 0.00027 36.5 31.1 235 72-365 205-460 (464)
28 3k26_A Polycomb protein EED; W 91.4 7.7 0.00026 34.8 21.6 205 71-316 19-260 (366)
29 3jrp_A Fusion protein of prote 91.0 8.6 0.00029 34.7 26.1 240 71-366 12-285 (379)
30 1k3i_A Galactose oxidase precu 90.7 15 0.00052 36.9 24.2 68 297-367 457-530 (656)
31 3no0_A DNA gyrase subunit A; D 90.6 8.7 0.0003 34.0 16.6 219 15-271 22-251 (276)
32 1r5m_A SIR4-interacting protei 90.4 11 0.00037 34.7 25.6 138 133-316 218-361 (425)
33 3uc1_A DNA gyrase subunit A; D 89.6 12 0.00041 34.1 21.4 229 16-271 41-284 (327)
34 3v7d_B Cell division control p 89.5 14 0.00048 34.8 35.9 269 29-366 133-419 (464)
35 3i2n_A WD repeat-containing pr 87.7 15 0.00051 32.8 23.2 234 71-366 19-289 (357)
36 4a11_B DNA excision repair pro 87.6 16 0.00056 33.2 30.6 247 71-366 100-363 (408)
37 3zwl_B Eukaryotic translation 87.2 16 0.00055 32.6 26.8 97 29-150 45-150 (369)
38 2aq5_A Coronin-1A; WD40 repeat 86.8 19 0.00065 33.1 25.3 148 30-203 49-205 (402)
39 3odt_A Protein DOA1; ubiquitin 86.8 15 0.00052 31.9 29.5 224 71-366 19-253 (313)
40 3sfz_A APAF-1, apoptotic pepti 86.6 39 0.0013 36.5 21.4 220 30-314 1017-1247(1249)
41 2xzm_R RACK1; ribosome, transl 86.4 18 0.00062 32.5 30.0 103 29-149 40-147 (343)
42 3i2n_A WD repeat-containing pr 85.7 19 0.00064 32.1 28.7 195 71-316 66-291 (357)
43 3vl1_A 26S proteasome regulato 85.1 23 0.00079 32.5 29.6 96 249-366 261-363 (420)
44 3jro_A Fusion protein of prote 84.7 37 0.0013 34.6 24.7 111 72-204 11-131 (753)
45 1yfq_A Cell cycle arrest prote 84.6 21 0.00071 31.6 24.8 237 29-316 24-282 (342)
46 3mkq_A Coatomer beta'-subunit; 84.3 39 0.0013 34.4 29.0 225 72-366 15-257 (814)
47 2pm9_A Protein WEB1, protein t 84.2 25 0.00085 32.2 17.9 109 71-203 166-292 (416)
48 4aow_A Guanine nucleotide-bind 84.1 22 0.00074 31.4 27.8 112 239-365 217-334 (340)
49 2zwa_A Leucine carboxyl methyl 83.6 40 0.0014 34.1 20.2 18 80-97 441-459 (695)
50 3sfz_A APAF-1, apoptotic pepti 81.8 62 0.0021 35.0 27.2 191 72-316 1005-1207(1249)
51 3uc1_A DNA gyrase subunit A; D 80.4 34 0.0012 31.0 22.8 223 77-322 50-285 (327)
52 4gga_A P55CDC, cell division c 80.3 37 0.0013 31.4 28.7 109 71-203 148-259 (420)
53 1pgu_A Actin interacting prote 80.1 45 0.0015 32.3 28.2 212 71-366 340-570 (615)
54 2vpj_A Kelch-like protein 12; 79.2 32 0.0011 30.1 14.2 17 350-366 245-261 (301)
55 3jrp_A Fusion protein of prote 79.0 35 0.0012 30.4 25.8 198 71-315 56-286 (379)
56 4aez_A CDC20, WD repeat-contai 78.5 41 0.0014 30.9 26.2 187 73-316 96-293 (401)
57 1wp5_A Topoisomerase IV; broke 77.1 42 0.0014 30.3 22.9 229 15-270 37-281 (323)
58 2xyi_A Probable histone-bindin 75.9 51 0.0017 30.6 23.6 258 72-366 130-408 (430)
59 1k8k_C P40, ARP2/3 complex 41 75.6 44 0.0015 29.8 23.9 244 71-366 9-272 (372)
60 1vyh_C Platelet-activating fac 75.4 51 0.0017 30.4 26.6 93 249-365 310-408 (410)
61 3ow8_A WD repeat-containing pr 75.4 44 0.0015 29.7 27.8 252 30-365 50-318 (321)
62 3jro_A Fusion protein of prote 75.0 76 0.0026 32.2 24.6 234 28-316 21-285 (753)
63 1suu_A DNA gyrase subunit A; t 74.3 49 0.0017 29.7 21.2 186 15-213 45-239 (312)
64 4g56_B MGC81050 protein; prote 73.4 53 0.0018 29.7 28.1 189 124-366 96-299 (357)
65 3no0_A DNA gyrase subunit A; D 73.1 49 0.0017 29.1 20.3 206 124-366 25-244 (276)
66 1sq9_A Antiviral protein SKI8; 73.0 54 0.0018 29.6 24.1 120 71-204 17-156 (397)
67 1xip_A Nucleoporin NUP159; bet 72.4 57 0.0019 30.3 13.0 65 73-150 90-154 (388)
68 3p6j_A De novo designed beta-t 72.4 33 0.0011 26.9 12.5 109 69-200 28-138 (142)
69 2pm9_A Protein WEB1, protein t 72.4 57 0.0019 29.6 25.5 239 71-367 68-336 (416)
70 2xyi_A Probable histone-bindin 72.2 62 0.0021 30.0 26.5 248 28-315 141-409 (430)
71 4g56_B MGC81050 protein; prote 71.6 58 0.002 29.4 31.4 185 123-366 140-341 (357)
72 1suu_A DNA gyrase subunit A; t 71.5 57 0.0019 29.2 22.8 227 69-318 45-285 (312)
73 1xip_A Nucleoporin NUP159; bet 70.4 69 0.0024 29.8 13.7 75 113-203 79-153 (388)
74 2aq5_A Coronin-1A; WD40 repeat 70.1 65 0.0022 29.3 24.9 113 76-203 40-161 (402)
75 1r5m_A SIR4-interacting protei 69.3 66 0.0023 29.1 29.9 234 72-366 110-359 (425)
76 3mkq_A Coatomer beta'-subunit; 67.8 1.1E+02 0.0037 31.0 28.8 221 28-316 25-259 (814)
77 3gre_A Serine/threonine-protei 66.0 82 0.0028 28.9 18.3 72 71-149 64-140 (437)
78 1k8k_C P40, ARP2/3 complex 41 65.4 74 0.0025 28.2 27.5 243 28-316 20-274 (372)
79 3l6v_A GYRA, DNA gyrase subuni 62.6 96 0.0033 28.6 21.8 134 16-158 45-187 (370)
80 1zi0_A DNA gyrase subunit A; b 62.3 86 0.0029 27.9 24.2 227 69-319 40-280 (307)
81 3gre_A Serine/threonine-protei 61.8 98 0.0033 28.4 22.7 154 29-203 77-243 (437)
82 2ymu_A WD-40 repeat protein; u 60.4 1.2E+02 0.0041 29.0 28.4 217 72-364 346-576 (577)
83 1zi0_A DNA gyrase subunit A; b 60.3 93 0.0032 27.7 22.3 224 15-267 40-278 (307)
84 3l6v_A GYRA, DNA gyrase subuni 58.4 1.1E+02 0.0039 28.1 24.4 135 69-212 44-187 (370)
85 1erj_A Transcriptional repress 58.3 1.1E+02 0.0037 27.8 21.1 78 124-203 258-339 (393)
86 2woz_A Kelch repeat and BTB do 57.5 1E+02 0.0034 27.1 13.3 16 187-203 151-166 (318)
87 1wp5_A Topoisomerase IV; broke 56.6 1.1E+02 0.0038 27.4 23.7 231 69-322 37-283 (323)
88 3mmy_A MRNA export factor; mRN 56.4 1E+02 0.0035 27.0 22.3 149 123-316 40-199 (368)
89 3dm0_A Maltose-binding peripla 55.9 1.6E+02 0.0056 29.2 27.8 101 29-148 396-500 (694)
90 2ymu_A WD-40 repeat protein; u 55.8 1.4E+02 0.0049 28.4 31.2 219 72-366 305-537 (577)
91 3ii7_A Kelch-like protein 7; p 54.6 1.1E+02 0.0037 26.6 12.7 18 297-315 239-256 (306)
92 3frx_A Guanine nucleotide-bind 50.7 1.3E+02 0.0044 26.3 25.8 100 29-149 31-136 (319)
93 3dwl_C Actin-related protein 2 50.0 1.4E+02 0.0047 26.5 17.8 258 61-364 2-277 (377)
94 1yfq_A Cell cycle arrest prote 46.4 1.5E+02 0.005 25.8 32.6 201 71-316 12-225 (342)
95 1zvu_A Topoisomerase IV subuni 45.8 1.8E+02 0.006 29.4 11.4 132 15-157 501-639 (716)
96 1k3i_A Galactose oxidase precu 45.5 2.4E+02 0.0081 27.9 15.2 72 81-154 458-534 (656)
97 1q7f_A NHL, brain tumor CG1071 43.7 1.5E+02 0.0051 25.1 19.7 15 300-314 211-225 (286)
98 4ery_A WD repeat-containing pr 43.4 1.6E+02 0.0054 25.3 28.8 263 30-364 37-308 (312)
99 1pgu_A Actin interacting prote 43.2 2.3E+02 0.0078 27.1 33.5 108 72-204 208-327 (615)
100 4ggc_A P55CDC, cell division c 42.4 1.6E+02 0.0055 25.1 28.8 110 71-203 68-179 (318)
101 2ynn_A Coatomer subunit beta'; 40.7 1.8E+02 0.0061 25.1 29.7 225 72-366 15-257 (304)
102 1rwi_B Serine/threonine-protei 39.4 1.7E+02 0.0057 24.4 19.7 15 300-314 196-210 (270)
103 1zvt_A Topoisomerase IV subuni 39.2 1.8E+02 0.006 25.1 9.4 132 15-157 31-169 (256)
104 4gqb_B Methylosome protein 50; 38.0 2.2E+02 0.0074 25.4 30.4 186 124-366 84-287 (344)
105 3ei3_B DNA damage-binding prot 37.0 2.2E+02 0.0077 25.2 28.9 149 71-265 119-281 (383)
106 3ii7_A Kelch-like protein 7; p 36.9 2E+02 0.007 24.7 16.6 16 187-203 193-208 (306)
107 1got_B GT-beta; complex (GTP-b 36.9 2.2E+02 0.0074 25.0 30.2 102 239-364 228-339 (340)
108 3no2_A Uncharacterized protein 36.5 2.1E+02 0.007 24.6 22.0 27 237-263 175-203 (276)
109 4gqb_B Methylosome protein 50; 36.4 2.3E+02 0.0079 25.2 32.0 226 72-366 84-329 (344)
110 3vl1_A 26S proteasome regulato 36.3 2.4E+02 0.0082 25.3 32.2 68 71-150 140-211 (420)
111 3f3f_A Nucleoporin SEH1; struc 36.3 2E+02 0.007 24.5 25.9 120 72-204 13-142 (351)
112 4a11_B DNA excision repair pro 35.6 2.3E+02 0.008 25.0 37.7 206 71-317 44-277 (408)
113 1zgk_A Kelch-like ECH-associat 35.5 2.2E+02 0.0075 24.7 11.9 17 186-203 207-223 (308)
114 1vyh_C Platelet-activating fac 35.0 2.6E+02 0.0089 25.4 28.0 104 72-203 110-221 (410)
115 3zwl_B Eukaryotic translation 31.8 2.5E+02 0.0087 24.3 31.8 78 60-150 23-104 (369)
116 4asc_A Kelch repeat and BTB do 31.4 2.6E+02 0.0088 24.3 11.5 17 81-98 141-157 (315)
117 3q7x_A De novo designed beta-t 28.6 1.9E+02 0.0067 22.0 9.5 101 182-311 11-113 (132)
118 3f3f_A Nucleoporin SEH1; struc 27.1 2.9E+02 0.0099 23.5 22.1 121 123-265 12-142 (351)
119 3lrv_A PRE-mRNA-splicing facto 25.9 3.3E+02 0.011 23.7 18.2 108 72-204 127-243 (343)
120 4aow_A Guanine nucleotide-bind 25.3 3.2E+02 0.011 23.3 24.7 26 178-203 217-244 (340)
121 3q7x_A De novo designed beta-t 25.1 2.3E+02 0.0078 21.6 10.9 102 77-201 12-114 (132)
122 3iz6_a 40S ribosomal protein R 24.2 3.8E+02 0.013 23.8 24.5 61 297-366 310-373 (380)
123 2uvk_A YJHT; unknown function, 23.7 1.7E+02 0.0057 26.1 6.9 17 186-203 110-126 (357)
124 4asc_A Kelch repeat and BTB do 22.6 3.7E+02 0.013 23.2 13.4 16 187-203 189-204 (315)
125 1q7f_A NHL, brain tumor CG1071 22.2 3.5E+02 0.012 22.7 21.4 15 188-202 167-181 (286)
126 2ynn_A Coatomer subunit beta'; 20.7 4E+02 0.014 22.7 24.6 140 27-203 24-170 (304)
127 1zvt_A Topoisomerase IV subuni 20.1 4.1E+02 0.014 22.7 15.5 123 129-272 41-169 (256)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.7e-74 Score=554.93 Aligned_cols=371 Identities=29% Similarity=0.481 Sum_probs=330.6
Q ss_pred eeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCC
Q 014534 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGIS 106 (423)
Q Consensus 27 ~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~ 106 (423)
+...+...+.+|+||+||.|.+||||.++.+++..|++++.+.+.+|++|+||..|+++|+++|+||+||.|..||||.+
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 45556667799999999999999999998888999999998888899999999999999999999999999999999998
Q ss_pred CCCCccccceEeccCCC---ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEe
Q 014534 107 ENIGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (423)
Q Consensus 107 ~~~~~~~~p~~~~~l~~---~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (423)
. ......|.+++.+.. ++++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++..+.+.+|++|+
T Consensus 89 ~-~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 89 G-TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp S-SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEEEE
T ss_pred C-cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc--CcCCeEecccCCCeEEEEE
Confidence 4 455677888876554 568899999999999999999999999999999987654 5778889888888999999
Q ss_pred cCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCC--ceeEEEecCCCEEE
Q 014534 184 LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYI 261 (423)
Q Consensus 184 ~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~ 261 (423)
||.+|+++|+++|+||+||.|.++|||.+.. .....|.++..+...+|++|+||. .|+++++++|+||+
T Consensus 166 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~---------~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~ 236 (389)
T 3kci_A 166 AGGAHSACVTAAGDLYTWGKGRYGRLGHSDS---------EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWS 236 (389)
T ss_dssp ECSSEEEEEETTSCEEEEECCGGGTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEE
T ss_pred eCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC---------cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEE
Confidence 9999999999999999999999999998875 345678888888888999999995 89999999999999
Q ss_pred EecCCCCccCcCCCCCCCCCeeecCCC--CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCC
Q 014534 262 FGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFS 339 (423)
Q Consensus 262 ~G~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 339 (423)
||.|.++|||.+.......|.+++.+. +|++|+||.+|+++|+++|+||+||.|.++|||.++......|.++. .+.
T Consensus 237 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~-~l~ 315 (389)
T 3kci_A 237 WGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ-GLQ 315 (389)
T ss_dssp EECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG-GGT
T ss_pred EeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEec-cCC
Confidence 999999999999888888899888766 59999999999999999999999999999999999988888999998 467
Q ss_pred CCCeEEEecCCceeEEEE-CCcEEEEecCCCCCCcccCCCCCCCcccCCCCCCccccEEEEeCCCceEEEEeccCCceEE
Q 014534 340 ESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGA 418 (423)
Q Consensus 340 ~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~ 418 (423)
..+|++|+||.+|+++++ +|+||+||+ |++||||++..+....|++|+.+.+.+|++|+||.+||++
T Consensus 316 ~~~v~~ia~G~~h~~al~~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~a 383 (389)
T 3kci_A 316 GKKVIAIATGSLHCVCCTEDGEVYTWGD------------NDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383 (389)
T ss_dssp TCCEEEEEECSSEEEEEETTCCEEEEEC------------CTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEE
T ss_pred CCCEEEEEeccCeEEEECCCCCEEEeeC------------CCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEE
Confidence 789999999999999999 999999999 7999999999999999999998999999999999999999
Q ss_pred EEee
Q 014534 419 LLEY 422 (423)
Q Consensus 419 ~~~~ 422 (423)
|.++
T Consensus 384 l~~~ 387 (389)
T 3kci_A 384 WSTS 387 (389)
T ss_dssp ECC-
T ss_pred EecC
Confidence 9864
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.8e-70 Score=533.97 Aligned_cols=364 Identities=33% Similarity=0.576 Sum_probs=329.8
Q ss_pred hhhhhhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCC
Q 014534 11 KYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETG 90 (423)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G 90 (423)
.+..+...+++++++..|+.+++ .+++||+||.|.+||||.++.+++..|++++.+.+.+|++|+||..|+++|+++|
T Consensus 10 ~v~~~~~~v~~ia~G~~hs~al~--~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 10 EVTAPPRKVLIISAGASHSVALL--SGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp -----CCCEEEEEECSSEEEEEE--TTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTT
T ss_pred cCCCCccceEEEecCCCeEEEEE--eCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCC
Confidence 34555667788999999999988 8999999999999999999999999999999998889999999999999999986
Q ss_pred -cEEEEecCCCCcccCCCCCCccccceEeccCCC-ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccc
Q 014534 91 -CVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (423)
Q Consensus 91 -~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p 168 (423)
+||+||.|.+||||.+. ......|.+++.+.. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|
T Consensus 88 g~v~~wG~n~~GqLG~g~-~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p 164 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGN-SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED--SLVP 164 (406)
T ss_dssp TEEEEEECCGGGTTCSSS-CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC--EEEE
T ss_pred CEEEEEcCCCCcCCCCCC-CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC--cccc
Confidence 99999999999999984 455677888876655 899999999999999999999999999999999987764 5678
Q ss_pred eEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCc
Q 014534 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL 248 (423)
Q Consensus 169 ~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 248 (423)
.++..+++.+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|.++..+...+|++|+||.+
T Consensus 165 ~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~---------~~~~~p~~v~~~~~~~i~~va~G~~ 235 (406)
T 4d9s_A 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR---------TDRLVPERVTSTGGEKMSMVACGWR 235 (406)
T ss_dssp EECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS---------CCEEEEEECCCSTTCCEEEEEECSS
T ss_pred eEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC---------CCcCccEEecccCCceEEEEEECCC
Confidence 8888888889999999999999999999999999999999998875 3456788888887789999999999
Q ss_pred eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC--CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCC
Q 014534 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSID 326 (423)
Q Consensus 249 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~ 326 (423)
|+++|+++|+||+||.|.++|||.+.......|.++..+. +|++|+||.+|+++|+++|+||+||.|.+||||.++..
T Consensus 236 ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~ 315 (406)
T 4d9s_A 236 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315 (406)
T ss_dssp EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSS
T ss_pred cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCC
Confidence 9999999999999999999999999888888899888766 49999999999999999999999999999999999988
Q ss_pred CcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEecCCCCCCcccCCCCCCCcccCCCCCCccccEEEEeC
Q 014534 327 VLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFG 401 (423)
Q Consensus 327 ~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~ 401 (423)
....|.++.. +...+|++|+||.+|+++++ +|+||+||+ |.+||||+++..+...|++|+.+
T Consensus 316 ~~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~l 378 (406)
T 4d9s_A 316 DQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGR------------GTNGQLGIGESVDRNFPKIIEAL 378 (406)
T ss_dssp CEEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCCCEEEEEECGGG
T ss_pred CCccCEEEec-cCCCcEEEEEeCCCeEEEEeCCCCEEEecC------------CCCCccCCCCCCCCcCCEEeeee
Confidence 8888999874 46679999999999999999 999999999 79999999999999999999854
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-70 Score=533.54 Aligned_cols=386 Identities=25% Similarity=0.355 Sum_probs=326.5
Q ss_pred hhhhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCC-CCcccceeeCccCCCceEEEEcCCcceEEEEcCCc
Q 014534 13 YLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL-ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC 91 (423)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~-~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~ 91 (423)
.++...+.+++++..++.+++ ++|+||+||.|.+||||.++. .....|.+++.+.+ |++|+||..|+++|+++|+
T Consensus 20 ~~~~~~~~~ia~g~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~--v~~va~G~~h~~~l~~~G~ 95 (423)
T 3mvd_K 20 QPPKAKRARIAFHLELPKRRT--VLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTKSGD 95 (423)
T ss_dssp ---------CCCCCCCCCCCC--CCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS--EEEEEECSSEEEEEETTSC
T ss_pred CCccceeeEEecCCccceeec--CCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC--ceEEeeCCCeEEEEeCCCe
Confidence 455566778999999998887 999999999999999999964 45778999887765 8999999999999999999
Q ss_pred EEEEecCCCCcccCCCCCC-ccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeC--CCCCCCCCCCCCCcccccc
Q 014534 92 VYATGLNDFGQLGISENIG-YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIP 168 (423)
Q Consensus 92 v~~wG~n~~gqlg~~~~~~-~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~~~p 168 (423)
||+||.|.+||||.+.... ....|.++. +..+|++|+||..|+++|+++|+||+||. |.++|||.+.... .+.|
T Consensus 96 v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~~~p 172 (423)
T 3mvd_K 96 IYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--KRTP 172 (423)
T ss_dssp EEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--EEEE
T ss_pred EEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC--Ccee
Confidence 9999999999999986543 356788887 56799999999999999999999999999 9999999877654 3444
Q ss_pred eEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccccc--ccccccccceeeeccCCccEEEEeeC
Q 014534 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKELEGVKVKIAAAG 246 (423)
Q Consensus 169 ~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~--~~~~~~~~p~~i~~~~~~~i~~i~~g 246 (423)
.. .+...+|++|+||.+|+++|+++|+||+||.|.++|||.+........ ........|.++......+|++|+||
T Consensus 173 ~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g 250 (423)
T 3mvd_K 173 ID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT 250 (423)
T ss_dssp EE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE
T ss_pred eE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC
Confidence 44 356778999999999999999999999999999999999765432211 11234567888887777789999999
Q ss_pred CceeEEE-ecCCCEEEEecCCCCccCcCCCC--CCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCC
Q 014534 247 FLHSACI-DENGRVYIFGDRAVDKMLFQEGN--HARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (423)
Q Consensus 247 ~~~~~~l-t~~g~v~~~G~n~~gqlg~~~~~--~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~ 323 (423)
.+|++++ +++|+||+||.|.++|||.+... ....|.++. +.+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 251 ~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g 329 (423)
T 3mvd_K 251 NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG 329 (423)
T ss_dssp TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSS
T ss_pred CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCC
Confidence 9999999 69999999999999999995443 334566655 6789999999999999999999999999999999999
Q ss_pred CCCC-cCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEecCCCCCCcccCCCCCCCcccCCCCCCccccEEEEe-
Q 014534 324 SIDV-LHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNF- 400 (423)
Q Consensus 324 ~~~~-~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~- 400 (423)
+... ...|.+++. +.. +|++|+||.+|+++++ +|+||+||+ |.+||||+++..+...|++|..
T Consensus 330 ~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~~ 395 (423)
T 3mvd_K 330 DVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGS------------GVNNQLGVGDGDDELEPIVVVSK 395 (423)
T ss_dssp SCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEEC------------CTTSCSSSSSSCCEEEEEECCST
T ss_pred CccccccCceEecc-CCC-CEEEEEcCCCeEEEEcCCCCEEEECC------------CCCCCCCCCCCCCcccCeEEeCc
Confidence 7655 457888873 344 8999999999999999 999999999 7999999999999999999985
Q ss_pred -CCCceEEEEeccCCceEEEEee
Q 014534 401 -GENVKALQVSCGFNHTGALLEY 422 (423)
Q Consensus 401 -~~~~~v~~i~~G~~~t~~~~~~ 422 (423)
+.+.+|++|+||.+||++|+++
T Consensus 396 ~~~~~~v~~va~G~~ht~~l~~~ 418 (423)
T 3mvd_K 396 NTQGKHMLLASGGGQHAIFLVKA 418 (423)
T ss_dssp TTTTCCEEEEEECSSEEEEEEEC
T ss_pred ccCCCEEEEEEECCCcEEEEEcc
Confidence 6778999999999999999975
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.9e-70 Score=532.85 Aligned_cols=378 Identities=29% Similarity=0.438 Sum_probs=322.3
Q ss_pred cccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCC-cccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEecCCC
Q 014534 22 SKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDF 100 (423)
Q Consensus 22 ~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~-~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~ 100 (423)
.+....|+++++ .++.||+||.|.+||||+++... +..|++++.+ .+|++|+||..|+++|+++|+||+||.|.+
T Consensus 13 ~~~~~~h~~~l~--~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~ 88 (413)
T 1a12_A 13 KKVKVSHRSHST--EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDE 88 (413)
T ss_dssp CCCCCCCTTCCC--CCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred hhhccccceeec--CCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCC
Confidence 344456777666 89999999999999999998654 6789888864 579999999999999999999999999999
Q ss_pred CcccCCCCC-CccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeC--CCCCCCCCCCCCCcccccceEecccCCc
Q 014534 101 GQLGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (423)
Q Consensus 101 gqlg~~~~~-~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~~~p~~i~~~~~~ 177 (423)
||||.+... .....|.++. ++.+|++|+||..|+++|+++|+||+||. |.+||||.+.... ....|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~-~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-KSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB-CEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEec-CCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccc-cccCCEEe--cCCC
Confidence 999998653 3456788885 66799999999999999999999999999 8999999876543 23457766 4567
Q ss_pred eeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccccc--ccccccccceeeecc-----CCccEEEEeeCCcee
Q 014534 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKEL-----EGVKVKIAAAGFLHS 250 (423)
Q Consensus 178 ~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~--~~~~~~~~p~~i~~~-----~~~~i~~i~~g~~~~ 250 (423)
+|++|+||.+|+++|+++|+||+||.|.++|||.+........ ........|+.+... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 8999999999999999999999999999999998753211100 000123456555432 346899999999999
Q ss_pred EEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCC----cceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCC-CC
Q 014534 251 ACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG-SI 325 (423)
Q Consensus 251 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~----i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~-~~ 325 (423)
++|+++|+||+||.|.++|||.+.......|.++..+.. |++|+||.+|+++|+++|+||+||.|.+||||.+ +.
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999998888888998887654 9999999999999999999999999999999999 56
Q ss_pred CCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEecCCCCCCcccCCCCCCCcccCCCCCCccccEEEEe--CC
Q 014534 326 DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNF--GE 402 (423)
Q Consensus 326 ~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~--~~ 402 (423)
.....|++|+. +. +|++|+||.+|+++++ +|+||+||. |.+||||++..++...|++|+. ++
T Consensus 325 ~~~~~P~~v~~-l~--~v~~v~~G~~hs~alt~~G~v~~wG~------------n~~gqLG~g~~~~~~~P~~v~~~~~~ 389 (413)
T 1a12_A 325 EEKSIPTLISR-LP--AVSSVACGASVGYAVTKDGRVFAWGM------------GTNYQLGTGQDEDAWSPVEMMGKQLE 389 (413)
T ss_dssp CCEEEEEECCS-SS--SEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCSCEEEEEECCSTTTT
T ss_pred ccccCCEEecc-cC--ceeEEEECcceEEEEeCCCCEEEecC------------CCCCCCCCCCCCCcccCeEccccccC
Confidence 67778988874 22 8999999999999999 999999999 7999999999988889999984 57
Q ss_pred CceEEEEeccCCceEEEEee
Q 014534 403 NVKALQVSCGFNHTGALLEY 422 (423)
Q Consensus 403 ~~~v~~i~~G~~~t~~~~~~ 422 (423)
+.+|++|+||.+||++|+++
T Consensus 390 ~~~v~~v~~G~~ht~~l~~~ 409 (413)
T 1a12_A 390 NRVVLSVSSGGQHTVLLVKD 409 (413)
T ss_dssp TEEEEEEEECSSEEEEEEEE
T ss_pred CCeEEEEeeCCCcEEEEEec
Confidence 78999999999999999875
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-69 Score=531.96 Aligned_cols=371 Identities=25% Similarity=0.393 Sum_probs=313.7
Q ss_pred eeeEEeeccCCcEEEEeEcCCCCCcCCCCC---CCcccceeeCcc--CCCceEEEEcCCcceEEEEcCCcEEEEecCCCC
Q 014534 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSL---ESRWRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFG 101 (423)
Q Consensus 27 ~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~---~~~~~p~~~~~~--~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~g 101 (423)
.+.++++ +++.||+||.|.+||||.++. .....|++++.+ ...+|++|+||..|+++|+++|+||+||.|..|
T Consensus 20 ~h~~~~~--~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~G 97 (473)
T 3of7_A 20 KHMYLSV--QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVG 97 (473)
T ss_dssp HHHHCCS--SCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTS
T ss_pred cccccCC--CCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCC
Confidence 3444444 899999999999999999974 346788888877 566899999999999999999999999999999
Q ss_pred cccCCCCCCc----------------------cccceEecc--CC-----CceEEEEcCCceeEEEecCCcEEEEeC--C
Q 014534 102 QLGISENIGY----------------------SLEPLRISG--LK-----KEVVQISTGYHHSSAITVDGELYMWGK--N 150 (423)
Q Consensus 102 qlg~~~~~~~----------------------~~~p~~~~~--l~-----~~i~~i~~G~~~~~~lt~~G~vy~~G~--n 150 (423)
|||.+..... ...|.+++. ++ .+|++|+||..|+++|+++|+||+||. +
T Consensus 98 qLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~ 177 (473)
T 3of7_A 98 ALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRC 177 (473)
T ss_dssp TTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEE
T ss_pred CCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcC
Confidence 9998754331 457888875 53 599999999999999999999999998 6
Q ss_pred CCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccce
Q 014534 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (423)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~ 230 (423)
..||||...........|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+..... ......|.
T Consensus 178 ~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~-----~~~~~~p~ 252 (473)
T 3of7_A 178 NEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF-----RLKTLDPR 252 (473)
T ss_dssp TTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG-----TTTTCSCE
T ss_pred CCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc-----cccccCce
Confidence 7899998665545677899998888889999999999999999999999999999999998864321 12244565
Q ss_pred eeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCC----CCCCCeeecCCC--CcceEEeeCCeeEEEE
Q 014534 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN----HARRPSLISKLP--YSEEVVCGGYHTCVLT 304 (423)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~----~~~~p~~v~~~~--~i~~i~~G~~~~~~lt 304 (423)
.+.. ..|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|.++..+. +|++|+||.+|+++|+
T Consensus 253 ~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt 329 (473)
T 3of7_A 253 PFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILS 329 (473)
T ss_dssp ECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEE
T ss_pred ecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEe
Confidence 5532 479999999999999999999999999999999988754 335678887664 6999999999999999
Q ss_pred cCCCEEEEeCCCCCCCCCCCCC--------------CcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEecCCC
Q 014534 305 SGGELYTWGSNENGCLGIGSID--------------VLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGS 369 (423)
Q Consensus 305 ~~g~vy~wG~n~~gqlG~~~~~--------------~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~ 369 (423)
++|+||+||.|.+||||.+... ....|.+++. ..+|++|+||.+|++|++ +|+||+||+
T Consensus 330 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~G~vy~wG~--- 403 (473)
T 3of7_A 330 QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQNGIAYSWGF--- 403 (473)
T ss_dssp TTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETTSCEEEEEC---
T ss_pred CCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC---CCceEEEEeCCCeEEEEeCCCcEEEeeC---
Confidence 9999999999999999987421 1234555542 238999999999999999 999999999
Q ss_pred CCCcccCCCCCCCcccCCC-CCCccccEEEE--eCCCceEEEEeccCCceEEEEee
Q 014534 370 HGTFSEDGHSSGGQLGHGN-DVDYIHPTIVN--FGENVKALQVSCGFNHTGALLEY 422 (423)
Q Consensus 370 ~~~~~~~~~N~~gqlG~~~-~~~~~~p~~v~--~~~~~~v~~i~~G~~~t~~~~~~ 422 (423)
|.+||||++. .+....|++|+ .+.+.+|+.|+||.+||+++.+.
T Consensus 404 ---------n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 404 ---------GETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp ---------CTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred ---------CCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 7999999999 77888999998 45678999999999999999874
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.2e-64 Score=493.07 Aligned_cols=327 Identities=33% Similarity=0.596 Sum_probs=300.0
Q ss_pred CceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCC-ceEEEEcCCceeEEEecCC-cEEEEe
Q 014534 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDG-ELYMWG 148 (423)
Q Consensus 71 ~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~-~i~~i~~G~~~~~~lt~~G-~vy~~G 148 (423)
.+|++|+||..|+++|+++|+||+||.|.+||||.+. ......|.+++.+.. +|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~-~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSS-CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCC-cccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 5799999999999999999999999999999999984 445578888876654 8999999999999999986 999999
Q ss_pred CCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccccccccc
Q 014534 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYT 228 (423)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~ 228 (423)
.|.+||||.+.... ...|..+..+.+.+|++|+||..|+++|+++|+||+||.|.++|||.+.. .....
T Consensus 95 ~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~---------~~~~~ 163 (406)
T 4d9s_A 95 WGDFGRLGHGNSSD--LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT---------EDSLV 163 (406)
T ss_dssp CCGGGTTCSSSCCC--EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC---------CCEEE
T ss_pred CCCCcCCCCCCCCc--cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC---------CCccc
Confidence 99999999987754 56778888888889999999999999999999999999999999998875 34567
Q ss_pred ceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC--CcceEEeeCCeeEEEEcC
Q 014534 229 PRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSG 306 (423)
Q Consensus 229 p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~i~~G~~~~~~lt~~ 306 (423)
|.++..+...+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|.++..+. +|++|+||.+|+++|+++
T Consensus 164 p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~ 243 (406)
T 4d9s_A 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYS 243 (406)
T ss_dssp EEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETT
T ss_pred ceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCC
Confidence 888888888899999999999999999999999999999999999888888888887664 799999999999999999
Q ss_pred CCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEecCCCCCCcccCCCCCCCccc
Q 014534 307 GELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLG 385 (423)
Q Consensus 307 g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~~~~~~~~~~N~~gqlG 385 (423)
|+||+||.|.++|||.++......|.++. .+.+.+|++|+||.+|+++|+ +|+||+||+ |.+||||
T Consensus 244 G~v~~wG~n~~GqlG~g~~~~~~~p~~v~-~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~------------n~~GqLG 310 (406)
T 4d9s_A 244 GALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGW------------NKFGQVG 310 (406)
T ss_dssp CCEEEEECCTTSTTCSSSCCCEEEEEECG-GGTTSCEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTC
T ss_pred CCEEEeeCCCCCCCCCCCCcCccccEEec-ccCCCCEEEEEecCCEEEEEcCCCeEEEeeC------------CCCCCCC
Confidence 99999999999999999988888999988 467788999999999999999 999999999 7999999
Q ss_pred CCCCCCccccEEEEeCCCceEEEEeccCCceEEEEee
Q 014534 386 HGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEY 422 (423)
Q Consensus 386 ~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~~~~~ 422 (423)
++.......|++|+.+.+.+|++|+||.+||++|.++
T Consensus 311 ~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~ 347 (406)
T 4d9s_A 311 VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 347 (406)
T ss_dssp SSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETT
T ss_pred CCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCC
Confidence 9999888999999988888999999999999999863
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-62 Score=474.13 Aligned_cols=328 Identities=31% Similarity=0.481 Sum_probs=297.8
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCc--eEEEEcCCcceEEEEcCCcE
Q 014534 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHS--LKALACGGAHTLFLTETGCV 92 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~--i~~i~~g~~~~~~lt~~G~v 92 (423)
++..+++++++..++++++ ++|+||+||.|.+||||.++.++...|.+++.+.+.. +++|+||..|+++|+++|+|
T Consensus 51 ~~~~i~~i~~G~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v 128 (389)
T 3kci_A 51 ATLRPVQLIGGEQTLFAVT--ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEV 128 (389)
T ss_dssp HHTCEEEEEEETTEEEEEE--TTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCE
T ss_pred cCCceEEEEeCCCeEEEEc--CCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCE
Confidence 3445677889999999888 8999999999999999999999999999999887764 47889999999999999999
Q ss_pred EEEecCCCCcccCCCCCCccccceEeccCCC-ceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEe
Q 014534 93 YATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV 171 (423)
Q Consensus 93 ~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i 171 (423)
|+||.|.+||||.++ ......|.+++.+.. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++
T Consensus 129 ~~wG~n~~GqLG~g~-~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~--~~~p~~v 205 (389)
T 3kci_A 129 YSWGEAEDGKLGHGN-RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLV 205 (389)
T ss_dssp EEEECCGGGTTCSSS-CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEEC
T ss_pred EEEeCCCCCcCCCCC-CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc--cccceEe
Confidence 999999999999984 455677888887665 899999999999999999999999999999999987764 5678888
Q ss_pred cccCCceeEEEecCC--ceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCce
Q 014534 172 ECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH 249 (423)
Q Consensus 172 ~~~~~~~i~~i~~G~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~ 249 (423)
..+.+.+|++|+||. .|+++|+++|+||+||.|.++|||.+.. .....|.++..+.+..|++|+||..|
T Consensus 206 ~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~---------~~~~~p~~v~~~~~~~v~~v~~G~~h 276 (389)
T 3kci_A 206 EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS---------DGCKVPMKIDSLTGLGVVKVECGSQF 276 (389)
T ss_dssp GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC---------CCEEEEEECGGGTTSCEEEEEEETTE
T ss_pred cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC---------CCccccEEecccCCCcEEEEeCCCCE
Confidence 888889999999995 8999999999999999999999998864 34567888888888889999999999
Q ss_pred eEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC--CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCC
Q 014534 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDV 327 (423)
Q Consensus 250 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~ 327 (423)
+++|+++|+||+||.|.++|||.+.......|.++..+. +|++|+||.+|+++++++|+||+||.|.+||||.++...
T Consensus 277 s~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~ 356 (389)
T 3kci_A 277 SVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNA 356 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCC
T ss_pred EEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCC
Confidence 999999999999999999999999988888899998765 699999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCCeEEEecCCceeEEEE
Q 014534 328 LHSPERVQGPFSESPVDQVSCGWKHTAAIS 357 (423)
Q Consensus 328 ~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~ 357 (423)
...|++|+ .+...+|++|+||.+|+++++
T Consensus 357 ~~~P~~v~-~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 357 IQRPRLVA-ALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EEEEEECG-GGTTSCCCEEEEETTEEEEEC
T ss_pred ccCcEEec-ccCCCCEEEEEecCCcEEEEe
Confidence 99999997 467789999999999999998
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2e-60 Score=464.92 Aligned_cols=331 Identities=25% Similarity=0.387 Sum_probs=287.5
Q ss_pred hhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCC--CCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEEE
Q 014534 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL--ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYA 94 (423)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~--~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~ 94 (423)
..+++++++..|+++++ ++|+||+||.|.+||||.+.. .....|.++.. . .+|++|+||..|+++|+++|+||+
T Consensus 59 ~~i~~va~G~~hs~~l~--~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLS--KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEECSSEEEEEE--TTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCeEEEEeCCCeEEEEc--CCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEE
Confidence 45678899999999988 899999999999999999875 34678888854 2 379999999999999999999999
Q ss_pred Eec--CCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCc---------
Q 014534 95 TGL--NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK--------- 163 (423)
Q Consensus 95 wG~--n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~--------- 163 (423)
||. |.+||||.++.......|.++. ...+|++|+||..|+++|+++|+||+||.|.+||||.+.....
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~-~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQ-LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEEC-CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEec-CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 998 9999999986655556688874 4569999999999999999999999999999999998653211
Q ss_pred ccccceEeccc-----CCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCC-
Q 014534 164 VIPIPTKVECL-----SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG- 237 (423)
Q Consensus 164 ~~~~p~~i~~~-----~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~- 237 (423)
....|..+... ...+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|.++..+.+
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~---------~~~~~P~~v~~l~~~ 284 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT---------ESCFIPQNLTSFKNS 284 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSC---------SCEEEEEECGGGCCT
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCC---------CcccccEEchhccCC
Confidence 12456555432 3468999999999999999999999999999999998865 34567888887765
Q ss_pred -ccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcC-CCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCC
Q 014534 238 -VKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQ-EGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315 (423)
Q Consensus 238 -~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~-~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n 315 (423)
..|++|+||.+|+++|+++|+||+||.|.++|||.+ .......|++|+.+.+|++|+||.+|+++|+++|+||+||.|
T Consensus 285 ~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 285 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCC
Confidence 569999999999999999999999999999999998 456677899999888999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCccccCC-CCCCCeEEEecCCceeEEEE-CCcE
Q 014534 316 ENGCLGIGSIDVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS-EGKI 361 (423)
Q Consensus 316 ~~gqlG~~~~~~~~~p~~v~~~-~~~~~i~~i~~G~~h~~~l~-~g~v 361 (423)
.+||||.++......|.+|... +...+|++|+||.+|+++++ +|++
T Consensus 365 ~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 365 TNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 9999999988888889998752 45678999999999999999 8764
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3e-59 Score=458.28 Aligned_cols=322 Identities=23% Similarity=0.280 Sum_probs=272.9
Q ss_pred CCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeC
Q 014534 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (423)
Q Consensus 70 ~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~ 149 (423)
..++++|++|..|+++|+++|+||+||.|.+||||.+........|.+++.++ .|++|+||..|+++|+++|+||+||.
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~-~v~~va~G~~h~~~l~~~G~v~~wG~ 101 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP-DAVDISAGGMHNLVLTKSGDIYSFGC 101 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS-SEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC-CceEEeeCCCeEEEEeCCCeEEEeEC
Confidence 35788999999999999999999999999999999997666777888888665 79999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEec--CCCCccCCCCCCcccccccccccc
Q 014534 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA--GGSGRLGHGQESSILGFLRSTSEY 227 (423)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~~~~~~~~ 227 (423)
|.+||||.+.........|.++.. ..+|++|+||.+|+++|+++|+||+||. |.++|||.+... ...
T Consensus 102 n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~---------~~~ 170 (423)
T 3mvd_K 102 NDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG---------NKR 170 (423)
T ss_dssp CSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB---------CEE
T ss_pred CCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC---------CCc
Confidence 999999998876555677888764 3479999999999999999999999999 999999987642 233
Q ss_pred cceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCC-----------CCCCCeeecCCC--CcceEE
Q 014534 228 TPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN-----------HARRPSLISKLP--YSEEVV 294 (423)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~-----------~~~~p~~v~~~~--~i~~i~ 294 (423)
.|.+ .+...+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|.++.... .|++|+
T Consensus 171 ~p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~ 248 (423)
T 3mvd_K 171 TPID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIW 248 (423)
T ss_dssp EEEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEE
T ss_pred eeeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEE
Confidence 4433 3555689999999999999999999999999999999997642 345777776543 699999
Q ss_pred eeCCeeEEE-EcCCCEEEEeCCCCCCCCCCCCCCc--CCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEecCCCC
Q 014534 295 CGGYHTCVL-TSGGELYTWGSNENGCLGIGSIDVL--HSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSH 370 (423)
Q Consensus 295 ~G~~~~~~l-t~~g~vy~wG~n~~gqlG~~~~~~~--~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~~~~~ 370 (423)
||.+|++++ +++|+||+||.|.++|||.+..... ..|.++. ..+|++|+||.+|+++|+ +|+||+||.
T Consensus 249 ~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v~~wG~---- 320 (423)
T 3mvd_K 249 ATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKCSVVGR---- 320 (423)
T ss_dssp EETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCEEEEEC----
T ss_pred ECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC----CCCeEEEEcccCeEEEEeCCCcEEEEEC----
Confidence 999999999 6999999999999999999654433 3454443 358999999999999999 999999999
Q ss_pred CCcccCCCCCCCcccCCCCCC-ccccEEEEeCCCceEEEEeccCCceEEEEee
Q 014534 371 GTFSEDGHSSGGQLGHGNDVD-YIHPTIVNFGENVKALQVSCGFNHTGALLEY 422 (423)
Q Consensus 371 ~~~~~~~~N~~gqlG~~~~~~-~~~p~~v~~~~~~~v~~i~~G~~~t~~~~~~ 422 (423)
|.+||||++.... ...|++|+.+.+ +|++|+||.+|+++|.++
T Consensus 321 --------n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 321 --------PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp --------CGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT
T ss_pred --------CCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCC
Confidence 7999999998755 568888887777 899999999999999753
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-58 Score=455.58 Aligned_cols=332 Identities=23% Similarity=0.360 Sum_probs=282.5
Q ss_pred hhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCC-----------------------cccceeeCc--c--
Q 014534 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-----------------------RWRPVVCSA--F-- 68 (423)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~-----------------------~~~p~~~~~--~-- 68 (423)
...++++++|..|+++++ ++|+||+||.|.+||||.+.... ...|.+++. +
T Consensus 66 ~~~i~~va~G~~Ht~alt--~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~ 143 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALD--EESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 143 (473)
T ss_dssp TTCEEEEEECSSEEEEEE--TTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHH
T ss_pred CCCEEEEEeCCCeEEEEe--cCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCc
Confidence 346778999999999998 89999999999999999987554 567888875 4
Q ss_pred --CCCceEEEEcCCcceEEEEcCCcEEEEec--CCCCcccCCC-CCCccccceEeccCCC-ceEEEEcCCceeEEEecCC
Q 014534 69 --EKHSLKALACGGAHTLFLTETGCVYATGL--NDFGQLGISE-NIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDG 142 (423)
Q Consensus 69 --~~~~i~~i~~g~~~~~~lt~~G~v~~wG~--n~~gqlg~~~-~~~~~~~p~~~~~l~~-~i~~i~~G~~~~~~lt~~G 142 (423)
++.+|++|+||..|+++|+++|+||+||. +..||||... .......|.+++.+.. +|++|+||..|+++|+++|
T Consensus 144 ~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 144 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred ccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 36789999999999999999999999998 6889999853 3345677888887664 7999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCc--ccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccccc
Q 014534 143 ELYMWGKNSNGQLGLGKKAAK--VIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (423)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~--~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~ 220 (423)
+||+||.|.++|||.+..... ....|..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~--- 297 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVED--- 297 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCT---
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccC---
Confidence 999999999999998765431 1334555532 57999999999999999999999999999999998864211
Q ss_pred ccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCC--------------CCCCCCeeecC
Q 014534 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG--------------NHARRPSLISK 286 (423)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~--------------~~~~~p~~v~~ 286 (423)
......|.++..+...+|++|+||..|+++|+++|+||+||.|.++|||.+.. .....|.+++.
T Consensus 298 --~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~ 375 (473)
T 3of7_A 298 --GALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN 375 (473)
T ss_dssp --TCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS
T ss_pred --CceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC
Confidence 12356788888777789999999999999999999999999999999997642 12346777877
Q ss_pred CCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCC-CCCcCCCccccCC-CCCCCeEEEecCCceeEEEE
Q 014534 287 LPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGS-IDVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS 357 (423)
Q Consensus 287 ~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~-~~~~~~p~~v~~~-~~~~~i~~i~~G~~h~~~l~ 357 (423)
+.+|++|+||.+|+++|+++|+||+||.|.+||||.++ ......|++|+.. +...+|++|+||..|++++.
T Consensus 376 ~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~ 448 (473)
T 3of7_A 376 VPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGG 448 (473)
T ss_dssp SCCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEE
Confidence 77899999999999999999999999999999999998 7788899999752 45568999999999999987
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.1e-52 Score=387.43 Aligned_cols=270 Identities=27% Similarity=0.385 Sum_probs=225.6
Q ss_pred EEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEe
Q 014534 39 FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI 118 (423)
Q Consensus 39 ~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~ 118 (423)
.||+||.|+..++. |.+++.+ .+|++|+||..|+++|+ +|+||+||.|.+||||.+ ..
T Consensus 3 ~v~~WG~n~~~~~~---------~~p~~~~--~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p---------~~- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEA---------TVPAEAQ--SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP---------AA- 60 (282)
T ss_dssp EEEEECSCCTTSTT---------CCCGGGS--SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC---------GG-
T ss_pred EEEEeCCCCCcCcc---------cCCcccc--CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC---------cc-
Confidence 59999998755432 2233333 36999999999999998 999999999999999853 11
Q ss_pred ccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcE
Q 014534 119 SGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198 (423)
Q Consensus 119 ~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v 198 (423)
...+|++|+||..|+++|+ +|+||+||.|.++|||. |.++ ..+|++|+||.+|+++|+ +|+|
T Consensus 61 --~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~----------P~~~----~~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 61 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV----------PAEA----RSGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----------CGGG----SSSEEEEEEETTEEEEEE-TTEE
T ss_pred --CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----------Cccc----CCCeEEEECcCCEEEEEe-CCeE
Confidence 2248999999999999996 99999999999999984 2222 236999999999999999 9999
Q ss_pred EEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCC
Q 014534 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHA 278 (423)
Q Consensus 199 ~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 278 (423)
|+||.|.++||+.... ...+|++|+||..|+++++ +|+||+||.|.++||+.
T Consensus 123 ~~wG~n~~gqlg~~~~---------------------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~------ 174 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPAE---------------------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV------ 174 (282)
T ss_dssp EEEECCTTSTTSCCGG---------------------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC------
T ss_pred EEecCCCCCcCCCCcc---------------------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC------
Confidence 9999999999973211 1136999999999999999 89999999999999973
Q ss_pred CCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEEC
Q 014534 279 RRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISE 358 (423)
Q Consensus 279 ~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~~ 358 (423)
|.++ ..+|++|+||.+|+++| ++|+||+||.|.++|||. |.+.. .+|++|+||.+|++++++
T Consensus 175 --p~~~--~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~--------p~~~~-----~~v~~i~~G~~h~~al~~ 236 (282)
T 3qhy_B 175 --PAEA--QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV--------PTEAL-----SGVSAIASGEWYSLALKN 236 (282)
T ss_dssp --CGGG--GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC--------CGGGG-----SSCCEEEECSSCEEEEET
T ss_pred --ceec--CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC--------CcccC-----CCceEEEcCCCEEEEEEC
Confidence 3322 35799999999999999 899999999999999984 33322 379999999999999999
Q ss_pred CcEEEEecCCCCCCcccCCCCCCCcccCCCCCCccccEEEEeCCCceEEEEeccCCceEEEEee
Q 014534 359 GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEY 422 (423)
Q Consensus 359 g~vy~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~~~~~ 422 (423)
|+||+||+ |+++|++... .|++|+||..|+++|.++
T Consensus 237 g~v~~wG~------------n~~gq~~v~~----------------~v~~iaaG~~h~~al~~~ 272 (282)
T 3qhy_B 237 GKVIAWGS------------SRTAPSSVQS----------------GVSSIEAGPNAAYALKGG 272 (282)
T ss_dssp TEEEEEST------------TCCCCGGGSS----------------CEEEEEECSSCEEEEEC-
T ss_pred CEEEEecC------------CCCccccCCC----------------CcEEEEECcCeEEEEecC
Confidence 99999999 7899998621 589999999999999875
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=6.5e-48 Score=355.61 Aligned_cols=251 Identities=24% Similarity=0.337 Sum_probs=210.1
Q ss_pred hhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEec
Q 014534 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL 97 (423)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~ 97 (423)
.+.+++++..|+++++ +++||+||.|.+||||. |.. ...+|++|+||..|+++|+ +|+||+||.
T Consensus 25 ~i~~ia~G~~h~~~l~---~G~v~~wG~n~~Gqlg~--------p~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK---GGKVLGWGANLNGQLTM--------PAA----TQSGVDAIAAGNYHSLALK-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSSEEEEEE---TTEEEEEECCSSSTTSC--------CGG----GGSCCCEEEECSSEEEEEE-TTEEEEEEC
T ss_pred CCcEEEeCCCeEEEEE---CCEEEEEeCCCCCCCCC--------Ccc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeC
Confidence 4678899999999883 89999999999999994 221 1236999999999999996 999999999
Q ss_pred CCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCc
Q 014534 98 NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (423)
Q Consensus 98 n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~ 177 (423)
|.+||||.+ .++ ..+|++|+||..|+++|+ +|+||+||.|.++||+... + ...
T Consensus 89 n~~Gqlg~P---------~~~---~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~------~~~ 141 (282)
T 3qhy_B 89 NEDGQTTVP---------AEA---RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E------AQS 141 (282)
T ss_dssp CTTSTTCCC---------GGG---SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G------GGS
T ss_pred CCCCCCCCC---------ccc---CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c------CCC
Confidence 999999853 222 348999999999999999 9999999999999998321 1 124
Q ss_pred eeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEecCC
Q 014534 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG 257 (423)
Q Consensus 178 ~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g 257 (423)
+|++|+||.+|+++|+ +|+||+||.|.++||+.. .++ ..+|++|+||.+|+++| ++|
T Consensus 142 ~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p-----------------~~~----~~~v~~i~~G~~hs~al-~~G 198 (282)
T 3qhy_B 142 GVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP-----------------AEA----QSGVDDVAGGIFHSLAL-KDG 198 (282)
T ss_dssp SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC-----------------GGG----GSSEEEEEECSSEEEEE-ETT
T ss_pred CeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc-----------------eec----CCCeEEEEecCCEEEEE-ECC
Confidence 6999999999999999 899999999999999732 111 23799999999999999 899
Q ss_pred CEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCC
Q 014534 258 RVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGP 337 (423)
Q Consensus 258 ~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 337 (423)
+||+||.|.++|||.+. +.+.+|++|+||.+|+++|+ +|+||+||.|.++|++. .
T Consensus 199 ~v~~wG~n~~gqlg~p~----------~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v------------~-- 253 (282)
T 3qhy_B 199 KVIAWGDNRYKQTTVPT----------EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSV------------Q-- 253 (282)
T ss_dssp EEEEEECCTTSTTCCCG----------GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGG------------S--
T ss_pred eEEEEECCCCCCCCCCc----------ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccC------------C--
Confidence 99999999999998432 23457999999999999999 99999999999988753 1
Q ss_pred CCCCCeEEEecCCceeEEEE-CCcEE
Q 014534 338 FSESPVDQVSCGWKHTAAIS-EGKIL 362 (423)
Q Consensus 338 ~~~~~i~~i~~G~~h~~~l~-~g~vy 362 (423)
..|++|+||..|+++|+ +++.+
T Consensus 254 ---~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 ---SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp ---SCEEEEEECSSCEEEEEC-----
T ss_pred ---CCcEEEEECcCeEEEEecCCCCC
Confidence 27999999999999999 77654
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.63 E-value=0.051 Score=52.00 Aligned_cols=237 Identities=9% Similarity=-0.008 Sum_probs=131.0
Q ss_pred CceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCC
Q 014534 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (423)
Q Consensus 71 ~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n 150 (423)
..|..++......+.-..||.|.+|-..... ....+..-...|..++......+.-..+|.|+.|-..
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGE------------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCC------------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCc------------EEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 4688888866666666789999999653211 1122222334788888877788888889999999653
Q ss_pred CCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccce
Q 014534 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (423)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~ 230 (423)
.... ..+.....-....|..++......+.-+.+|.|..|-...... ..
T Consensus 242 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------------------~~ 290 (435)
T 1p22_A 242 SPTD-----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--------------------VR 290 (435)
T ss_dssp SSSC-----------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE--------------------EE
T ss_pred CCCC-----------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE--------------------EE
Confidence 2111 0111111112335667776666777778899999995432100 00
Q ss_pred eeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeCCeeEEEEcCCCE
Q 014534 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGEL 309 (423)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~~~~~~lt~~g~v 309 (423)
.+. .....|..++......+.-..+|.|..|-...... ...+.. ...|..++....+.+.-..||.|
T Consensus 291 ~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i 358 (435)
T 1p22_A 291 TLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-----------LRVLEGHEELVRCIRFDNKRIVSGAYDGKI 358 (435)
T ss_dssp EEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECCCSSCEEEEECCSSEEEEEETTSCE
T ss_pred EEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE-----------EEEEeCCcCcEEEEEecCCEEEEEeCCCcE
Confidence 111 11224666666566666678899999995433110 111111 12466666655666667789999
Q ss_pred EEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEec
Q 014534 310 YTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (423)
Q Consensus 310 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~ 366 (423)
..|-.......... ....+.... ......|..++......+.-. ||.|..|-.
T Consensus 359 ~vwd~~~~~~~~~~---~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 359 KVWDLVAALDPRAP---AGTLCLRTL-VEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp EEEEHHHHTSTTSC---TTTTEEEEE-CCCSSCCCCEEECSSCEEECCSSSEEEEEC-
T ss_pred EEEECCCCCCcccc---ccchheeec-cCCCCCeEEEEeCCCEEEEEeCCCEEEEEEC
Confidence 99985431111000 000011100 113345666666444444444 899999976
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.11 E-value=0.21 Score=47.74 Aligned_cols=187 Identities=5% Similarity=-0.045 Sum_probs=98.9
Q ss_pred ceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCC
Q 014534 72 SLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (423)
Q Consensus 72 ~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (423)
.|..++......+.-..||.|.+|-.... .....+..-...|..++......+.-..+|.|+.|-...
T Consensus 201 ~v~~~~~~~~~l~s~s~dg~i~~wd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 201 TVRCMHLHEKRVVSGSRDATLRVWDIETG------------QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSC------------CEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred cEEEEEecCCEEEEEeCCCEEEEEECCCC------------cEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCC
Confidence 35555554445555556666666643211 001112222335666666556666667778888775321
Q ss_pred CCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccccccccccee
Q 014534 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL 231 (423)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~ 231 (423)
. .....+. .....|..++....+.+.-+.+|.|..|-......+ ..
T Consensus 269 ~-------------~~~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------------------~~ 314 (445)
T 2ovr_B 269 E-------------TCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI--------------------HT 314 (445)
T ss_dssp T-------------EEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE--------------------EE
T ss_pred C-------------cEeEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE--------------------EE
Confidence 0 0001111 122356667666667777778889998854321100 00
Q ss_pred eeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec----CCCCcceEEeeCCeeEEEEcCC
Q 014534 232 IKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS----KLPYSEEVVCGGYHTCVLTSGG 307 (423)
Q Consensus 232 i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~----~~~~i~~i~~G~~~~~~lt~~g 307 (423)
+. .....+..+.......+.-..+|.|..|-...... ...+. ....|..++....+.+.-..||
T Consensus 315 ~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 382 (445)
T 2ovr_B 315 LT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-----------LQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 382 (445)
T ss_dssp EC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECSTTSCSSCEEEEEECSSEEEEEETTS
T ss_pred Ec-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-----------EEEEccCCCCCCCEEEEEECCCEEEEEeCCC
Confidence 10 11124555555556666667899999995432111 11111 1124666766666667778899
Q ss_pred CEEEEeCCC
Q 014534 308 ELYTWGSNE 316 (423)
Q Consensus 308 ~vy~wG~n~ 316 (423)
.|..|-...
T Consensus 383 ~v~iwd~~~ 391 (445)
T 2ovr_B 383 TVKLWDLKT 391 (445)
T ss_dssp EEEEEETTT
T ss_pred eEEEEECCC
Confidence 999998654
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.97 E-value=0.27 Score=46.85 Aligned_cols=257 Identities=9% Similarity=0.022 Sum_probs=145.7
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCC
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISEN 108 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~ 108 (423)
..+.+...|+.|.+|-.... .....+.. ....|..++......+.-..||.|.+|-....
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-------- 189 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTG-----------KCLRTLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-------- 189 (445)
T ss_dssp TEEEEEETTSCEEEEETTTC-----------CEEEECCC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTT--------
T ss_pred CEEEEEECCCcEEEEECCCC-----------cEEEEEcC-CCCCEEEEEecCCEEEEEeCCCeEEEEECCcC--------
Confidence 34455567777888754321 11111221 22357777766666677778999999964321
Q ss_pred CCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCce
Q 014534 109 IGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQ 188 (423)
Q Consensus 109 ~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~ 188 (423)
.....+..-...|..++......+.-..+|.|+.|-..... ....+. .....|..++.....
T Consensus 190 ----~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------------~~~~~~-~~~~~v~~~~~~~~~ 251 (445)
T 2ovr_B 190 ----ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-------------CLHVLM-GHVAAVRCVQYDGRR 251 (445)
T ss_dssp ----EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-------------EEEEEE-CCSSCEEEEEECSSC
T ss_pred ----cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc-------------EEEEEc-CCcccEEEEEECCCE
Confidence 11122222334677777777777888889999999654210 001111 123356666666667
Q ss_pred EEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCC
Q 014534 189 SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVD 268 (423)
Q Consensus 189 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~g 268 (423)
.+.-+.+|.|..|-..... ....+. .....|..+.....+.+.-..+|.+..|-.....
T Consensus 252 l~~~~~dg~i~iwd~~~~~--------------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 252 VVSGAYDFMVKVWDPETET--------------------CLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp EEEEETTSCEEEEEGGGTE--------------------EEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCc--------------------EeEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC
Confidence 7777889999999532110 000111 1123566776666666667889999999543311
Q ss_pred ccCcCCCCCCCCCeeecC-CCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCC-CCCCCeEEE
Q 014534 269 KMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGP-FSESPVDQV 346 (423)
Q Consensus 269 qlg~~~~~~~~~p~~v~~-~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~~~~~i~~i 346 (423)
. ...+.. ...+..++......+.-..||.|..|-......+ ..+..+ .....|..+
T Consensus 311 ~-----------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 311 C-----------IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL-----------QTLQGPNKHQSAVTCL 368 (445)
T ss_dssp E-----------EEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EEECSTTSCSSCEEEE
T ss_pred E-----------EEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEE-----------EEEccCCCCCCCEEEE
Confidence 1 011111 1235566666666677788999999986432111 111110 123467778
Q ss_pred ecCCceeEEEE-CCcEEEEec
Q 014534 347 SCGWKHTAAIS-EGKILTWGW 366 (423)
Q Consensus 347 ~~G~~h~~~l~-~g~vy~wG~ 366 (423)
+......+.-. ||.|..|-.
T Consensus 369 ~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 369 QFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EECSSEEEEEETTSEEEEEET
T ss_pred EECCCEEEEEeCCCeEEEEEC
Confidence 77666655556 999999976
No 16
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.71 E-value=0.35 Score=44.19 Aligned_cols=263 Identities=8% Similarity=0.001 Sum_probs=120.3
Q ss_pred CceEEEEcCCc------ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC---CceeEEEecC
Q 014534 71 HSLKALACGGA------HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVD 141 (423)
Q Consensus 71 ~~i~~i~~g~~------~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G---~~~~~~lt~~ 141 (423)
..|..++.... ..+.-..||.|.+|-.... .....+......|..++.. ....+.-..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 35666665433 4555567889999954321 1112233234577777764 3455666778
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceEec--ccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccC-------
Q 014534 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLG------- 210 (423)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~--~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg------- 210 (423)
|.|+.|-..... ....+. ......|..++.. ....+....+|.|..|-......+.
T Consensus 138 g~i~iwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 138 HALRLWNIQTDT-------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp SCEEEEETTTTE-------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred CeEEEEEeecCe-------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 999999653210 111111 1123346666543 3455666788999999654211100
Q ss_pred CCCCCcccccccccccccce-eeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec---C
Q 014534 211 HGQESSILGFLRSTSEYTPR-LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS---K 286 (423)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~---~ 286 (423)
..+........ ......|. .........|..++......+....+|.+..|-.....+..............+. .
T Consensus 205 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
T 3k26_A 205 YNPNKTNRPFI-SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 283 (366)
T ss_dssp CCGGGCSSCCC-CEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC
T ss_pred ecCCCCccccc-ceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc
Confidence 00000000000 00000000 0000122244445444556666678899999965432221110001111111111 1
Q ss_pred C-CCcceEEe--e--CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCcee-EE-EE-C
Q 014534 287 L-PYSEEVVC--G--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AA-IS-E 358 (423)
Q Consensus 287 ~-~~i~~i~~--G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~-~~-l~-~ 358 (423)
. ..|..++. . ....+.-..||.|+.|-......+ ......+........|..++...+.. ++ -. |
T Consensus 284 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 284 SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 1 12333322 2 344555677899999986542111 00111122111145677777664433 33 33 8
Q ss_pred CcEEEEec
Q 014534 359 GKILTWGW 366 (423)
Q Consensus 359 g~vy~wG~ 366 (423)
|.|+.|-.
T Consensus 357 g~i~iwd~ 364 (366)
T 3k26_A 357 ASIWRWDR 364 (366)
T ss_dssp SEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999953
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.29 E-value=0.79 Score=43.49 Aligned_cols=227 Identities=10% Similarity=0.062 Sum_probs=133.5
Q ss_pred ceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCC
Q 014534 72 SLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (423)
Q Consensus 72 ~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (423)
.|..++......+.-..||.|.+|-.... .....+..-...|..++......+.-..+|.|..|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 46677776666667778888888854211 111223333447888888666777778899999996542
Q ss_pred CCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccccccccccee
Q 014534 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL 231 (423)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~ 231 (423)
.. ....+. .....|..++......+.-+.+|.|..|-...... ..+..
T Consensus 203 ~~-------------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~~ 250 (435)
T 1p22_A 203 GE-------------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD------------------ITLRR 250 (435)
T ss_dssp CC-------------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC------------------CEEEE
T ss_pred Cc-------------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC------------------ceeee
Confidence 10 011111 12345777777777777788999999995432110 00001
Q ss_pred eeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeCCeeEEEEcCCCEE
Q 014534 232 IKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELY 310 (423)
Q Consensus 232 i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~~~~~~lt~~g~vy 310 (423)
...-....|..++......+.-..+|.|..|-...... ...+.. ...|..++......+.-..||.|.
T Consensus 251 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 251 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 319 (435)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred EecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence 11112235666666666667778899999995432110 111121 224666666666677778899999
Q ss_pred EEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEec
Q 014534 311 TWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (423)
Q Consensus 311 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~ 366 (423)
.|-...... ...+. .....|..++......+.-. ||.|..|-.
T Consensus 320 iwd~~~~~~-----------~~~~~--~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 320 LWDIECGAC-----------LRVLE--GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEETTTCCE-----------EEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEECCCCCE-----------EEEEe--CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 998654111 11111 13346778887555555555 999999975
No 18
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.25 E-value=0.78 Score=42.99 Aligned_cols=138 Identities=12% Similarity=0.020 Sum_probs=76.3
Q ss_pred EeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCC--cceEEEEcCCcEEEEecCCCCcccCCCC
Q 014534 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISEN 108 (423)
Q Consensus 31 ~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~ 108 (423)
+++...++.|++|-.... + ....+.......|..|+... ...++-..+|.|.+|-.....
T Consensus 106 l~~~~~d~~v~lw~~~~~-~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~------- 167 (401)
T 4aez_A 106 VVAVALERNVYVWNADSG-S----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------- 167 (401)
T ss_dssp EEEEEETTEEEEEETTTC-C----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------
T ss_pred EEEEECCCeEEEeeCCCC-c----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------
Confidence 444557888999965431 1 11222221334577776543 344555678999999643211
Q ss_pred CCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CC
Q 014534 109 IGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GF 186 (423)
Q Consensus 109 ~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~ 186 (423)
....+......|..++......+.-..+|.|+.|-...... ....+.. ....|..++. ..
T Consensus 168 -----~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~-~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 168 -----KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH------------QIGTLQG-HSSEVCGLAWRSDG 229 (401)
T ss_dssp -----EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC------------EEEEEEC-CSSCEEEEEECTTS
T ss_pred -----EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc------------eeeEEcC-CCCCeeEEEEcCCC
Confidence 11222233447888887677777778899999996542110 0111111 1224555544 33
Q ss_pred ceEEEEEcCCcEEEEecC
Q 014534 187 EQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 187 ~~~~~lt~~g~v~~~G~n 204 (423)
...+.-+.+|.|+.|-..
T Consensus 230 ~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SEEEEEETTSCEEEEETT
T ss_pred CEEEEEeCCCeEEEccCC
Confidence 455556778999999543
No 19
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.05 E-value=0.014 Score=50.39 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=59.9
Q ss_pred CceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCC
Q 014534 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (423)
Q Consensus 71 ~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n 150 (423)
..|.+|+--..|..++--|++|+.+|.++.||+-++. -..+..++.+|.++++-+..-..+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-------------tagPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-------------HAGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-------------GGCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC-------------CcchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 4688899889999999999999999999999975541 223789999999999999999999999976
Q ss_pred CCCCC
Q 014534 151 SNGQL 155 (423)
Q Consensus 151 ~~gql 155 (423)
...-|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 54443
No 20
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.61 E-value=0.035 Score=47.87 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=59.4
Q ss_pred ceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEecC
Q 014534 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDEN 256 (423)
Q Consensus 177 ~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~ 256 (423)
.+|..|+-...|.+++--+++++.||.++.||+-.... ..+..++.+|..+++-+..-
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t----------------------agPfla~~AG~~fTVTVn~~ 366 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH----------------------AGPYIQLAAGHNFTVTVNTL 366 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG----------------------GCCEEEEEECSSEEEEEETT
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC----------------------cchHHhHhccCCeEEEEece
Confidence 46888999999999999999999999999999754322 12578999999999999999
Q ss_pred CCEEEEecCCCCcc
Q 014534 257 GRVYIFGDRAVDKM 270 (423)
Q Consensus 257 g~v~~~G~n~~gql 270 (423)
+.+-.||+.....|
T Consensus 367 nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 367 NQVMFWGDSPDNSL 380 (400)
T ss_dssp CCEEEEECCTTSTT
T ss_pred eeEEEecCCCCcce
Confidence 99999997765544
No 21
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.43 E-value=1.3 Score=39.20 Aligned_cols=256 Identities=10% Similarity=0.089 Sum_probs=130.2
Q ss_pred eeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC--CcceEEEEcCCcEEEEecCCCCcccC
Q 014534 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGI 105 (423)
Q Consensus 28 ~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~gqlg~ 105 (423)
...+.+.+.++.|.+|-.... ..+..+.. ....|..++.. ....+.-..+|.+..|-.....
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---- 92 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS---- 92 (313)
T ss_dssp TTEEEEEETTSEEEEEEESSS-----------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT----
T ss_pred CCEEEEEEcCCcEEEEECCCC-----------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC----
Confidence 334566678888888864321 11122221 12345555543 3444455667778777543211
Q ss_pred CCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec-
Q 014534 106 SENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL- 184 (423)
Q Consensus 106 ~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~- 184 (423)
.......+......|..++......+.-..+|.|+.|-.. .....+. .....+..+..
T Consensus 93 -----~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~---------------~~~~~~~-~~~~~v~~~~~~ 151 (313)
T 3odt_A 93 -----GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG---------------SLVYNLQ-AHNASVWDAKVV 151 (313)
T ss_dssp -----TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT---------------EEEEEEE-CCSSCEEEEEEE
T ss_pred -----CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC---------------cEEEecc-cCCCceeEEEEc
Confidence 0011122222344788888767777778889999999510 0011111 12233444433
Q ss_pred --CCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCc-eeEEEecCCCEEE
Q 014534 185 --GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL-HSACIDENGRVYI 261 (423)
Q Consensus 185 --G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~ 261 (423)
.....+..+.+|.|..|-... ....+.......+..++.... ..++...+|.|+.
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i 209 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQNDK----------------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKL 209 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTE----------------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEE
T ss_pred cCCCCEEEEEECCCCEEEEecCc----------------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEE
Confidence 455666778889999994110 000111111223444433221 2455577888999
Q ss_pred EecCCCCccCcCCCCCCCCCeeec-CCCCcceEEeeCC-eeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCC
Q 014534 262 FGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY-HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFS 339 (423)
Q Consensus 262 ~G~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 339 (423)
|-...... ...+. ....|..++.... ..++...||.|+.|-..... ....+. ..
T Consensus 210 ~d~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~--~~ 265 (313)
T 3odt_A 210 VDMHTGDV-----------LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS-----------LKQVIT--LP 265 (313)
T ss_dssp EETTTCCE-----------EEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC-----------EEEEEE--CS
T ss_pred EECCchhh-----------hhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc-----------eeEEEe--cc
Confidence 85433111 11111 1124555654433 45566788999999754321 111121 23
Q ss_pred CCCeEEEecCCceeEEE-E-CCcEEEEec
Q 014534 340 ESPVDQVSCGWKHTAAI-S-EGKILTWGW 366 (423)
Q Consensus 340 ~~~i~~i~~G~~h~~~l-~-~g~vy~wG~ 366 (423)
...|..++...+..++. . ||.|+.|=.
T Consensus 266 ~~~i~~~~~~~~~~~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 266 AISIWSVDCMSNGDIIVGSSDNLVRIFSQ 294 (313)
T ss_dssp SSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred CceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence 34677777655443433 4 999999976
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.40 E-value=2.4 Score=43.30 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=14.9
Q ss_pred CCeeEEEEcCCCEEEEeCC
Q 014534 297 GYHTCVLTSGGELYTWGSN 315 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n 315 (423)
..|++++..+++||.+|-.
T Consensus 598 ~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp BSCEEEEEETTEEEEECCB
T ss_pred ccceEEEeCCCEEEEECCc
Confidence 4677777777899999953
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.14 E-value=4.4 Score=35.98 Aligned_cols=268 Identities=10% Similarity=0.001 Sum_probs=129.9
Q ss_pred eeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCc-ceEEEEcCCcEEEEecCCCCcccCCCCCC
Q 014534 32 SSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIG 110 (423)
Q Consensus 32 ~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~-~~~~lt~~G~v~~wG~n~~gqlg~~~~~~ 110 (423)
++.+.+|++++.+......+.... .....+..... ....|..++...+ ..++...+|.|.+|-...... .
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~-------~ 85 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGI-PRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN-------K 85 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTC-CSEEEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC-------C
T ss_pred EEECCCCCEEEeecCCCcEecccc-CCccccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc-------e
Confidence 444588999988876554433322 22222222221 2335666665433 334444588899986543211 0
Q ss_pred ccccceEeccCCCceEEEEcCC--ceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CC
Q 014534 111 YSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GF 186 (423)
Q Consensus 111 ~~~~p~~~~~l~~~i~~i~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~ 186 (423)
..............|..++... ...+.-..+|.|+.|-..... ......+.. ....|..++. ..
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----------~~~~~~~~~-~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----------PRIKAELTS-SAPACYALAISPDS 153 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------------EEEEEEEC-SSSCEEEEEECTTS
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-----------cceeeeccc-CCCceEEEEECCCC
Confidence 0011111112334677766543 345555678999999653210 000111111 1233555443 34
Q ss_pred ceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeC--CceeEEEecCCCEEEEec
Q 014534 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGD 264 (423)
Q Consensus 187 ~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~ 264 (423)
...+.-+.+|.|+.|-..... ....+. .....|..++.. ....+....+|.|+.|-.
T Consensus 154 ~~l~~~~~dg~v~~~d~~~~~--------------------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLHNQT--------------------LVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp SEEEEEETTSCEEEEETTTTE--------------------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEEeCCCcEEEEeCCCCc--------------------eeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 455666788899999543110 000111 112245555543 334455567889999854
Q ss_pred CCCCccCcCCCCCCCCCeeecCCCCcceEEee--CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCC
Q 014534 265 RAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESP 342 (423)
Q Consensus 265 n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 342 (423)
..... ...+.....+..++.. ....++-..+|.++.|-..... ...+ ......
T Consensus 213 ~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~--~~~~~~ 267 (337)
T 1gxr_A 213 REGRQ-----------LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQL--HLHESC 267 (337)
T ss_dssp TTTEE-----------EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEE--CCCSSC
T ss_pred CCCce-----------EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEE--cCCccc
Confidence 32111 1111222234444432 2344455678888888755311 1111 123446
Q ss_pred eEEEecCCce--eEEEE-CCcEEEEec
Q 014534 343 VDQVSCGWKH--TAAIS-EGKILTWGW 366 (423)
Q Consensus 343 i~~i~~G~~h--~~~l~-~g~vy~wG~ 366 (423)
|..++...+. .+.-. ||.|+.|-.
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 7777665433 33334 899999976
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.04 E-value=5.3 Score=36.64 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=57.1
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCc---------ceEEEEcCCcEEEEecCC
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA---------HTLFLTETGCVYATGLND 99 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~---------~~~~lt~~G~v~~wG~n~ 99 (423)
..+++...|+.|++|-...... .........+.. ....|..++...+ ..+.-..||.|++|-...
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~ 100 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 100 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC
Confidence 5677778899999997643210 011111222221 2345777765433 444456789999986432
Q ss_pred CCcccCCCCCCccccceEeccC-----CCceEEEEcC------Cce-eEEEecCCcEEEEeCC
Q 014534 100 FGQLGISENIGYSLEPLRISGL-----KKEVVQISTG------YHH-SSAITVDGELYMWGKN 150 (423)
Q Consensus 100 ~gqlg~~~~~~~~~~p~~~~~l-----~~~i~~i~~G------~~~-~~~lt~~G~vy~~G~n 150 (423)
... ........+... ...|..++.. ... .+.-..+|.|+.|-..
T Consensus 101 ~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 101 EDE-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp CTT-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred Ccc-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 110 000002222223 2467666654 344 5555678999999654
No 25
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.00 E-value=4.9 Score=36.16 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=99.0
Q ss_pred CCceEEEEcCCc-----ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCC
Q 014534 70 KHSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDG 142 (423)
Q Consensus 70 ~~~i~~i~~g~~-----~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G 142 (423)
...|..|+...+ ..+.-..||.|.+|-....++ .....+..-...|..++.. ....+.-..+|
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 457888887654 344446689999997543111 1112233234477777654 33556667789
Q ss_pred cEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CC--ceEEEEEcCCcEEEEecCCCCccCCCCCCccc
Q 014534 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSIL 218 (423)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 218 (423)
.|..|-.... .+..+.. ....|..++. .. ...+.-..+|.|+.|-......
T Consensus 109 ~v~iwd~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------- 163 (368)
T 3mmy_A 109 TAKMWDLSSN--------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP---------- 163 (368)
T ss_dssp EEEEEETTTT--------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC----------
T ss_pred cEEEEEcCCC--------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE----------
Confidence 9999965421 1111111 2234666654 22 3345556789999994321100
Q ss_pred ccccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEeeCC
Q 014534 219 GFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY 298 (423)
Q Consensus 219 ~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~ 298 (423)
...+. . ...+..+.......++.+.++.+..|-.......- ............+..+.....
T Consensus 164 ----------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 164 ----------MMVLQ-L-PERCYCADVIYPMAVVATAERGLIVYQLENQPSEF------RRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp ----------SEEEE-C-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE------EECCCSCSSCEEEEEEEECTT
T ss_pred ----------EEEEe-c-CCCceEEEecCCeeEEEeCCCcEEEEEeccccchh------hhccccccCCCceEEEcccCC
Confidence 00111 1 11344455555667777888999988553311100 000000000011222332222
Q ss_pred e----eEEEEcCCCEEEEeCCC
Q 014534 299 H----TCVLTSGGELYTWGSNE 316 (423)
Q Consensus 299 ~----~~~lt~~g~vy~wG~n~ 316 (423)
. .++-..+|.+..|-...
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSC
T ss_pred CCCCeEEEecCCCcEEEEecCC
Confidence 2 56677899999998654
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.40 E-value=5.6 Score=35.29 Aligned_cols=223 Identities=9% Similarity=-0.022 Sum_probs=109.9
Q ss_pred CceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEE
Q 014534 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (423)
Q Consensus 71 ~~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~ 146 (423)
..|..++...+ ..+.-..+|.|.+|-.... . ......+......|..++.. ....+.-..+|.|+.
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---------T-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---------C-cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 45767665533 3444567889999864321 0 01112222223356666553 345566667899999
Q ss_pred EeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccccc
Q 014534 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (423)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (423)
|-.... .....+.. ....|..++. .....+..+.+|.|+.|-......
T Consensus 168 ~d~~~~-------------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------- 217 (337)
T 1gxr_A 168 WDLHNQ-------------TLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---------------- 217 (337)
T ss_dssp EETTTT-------------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------
T ss_pred EeCCCC-------------ceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce----------------
Confidence 965321 01111111 1234555554 334555667889999995432100
Q ss_pred ccccceeeeccCCccEEEEeeC--CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEee--CCe
Q 014534 225 SEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG--GYH 299 (423)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G--~~~ 299 (423)
...+. ....+..++.. ....++-..+|.++.|-..... ...+.. ...|..++.. ...
T Consensus 218 ----~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 218 ----LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp ----EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEECCCSSCEEEEEECTTSSE
T ss_pred ----Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEcCCccceeEEEECCCCCE
Confidence 00011 11234444432 3344445678888888543211 111211 2245556554 234
Q ss_pred eEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCc--eeEEEE-CCcEEEEe
Q 014534 300 TCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWK--HTAAIS-EGKILTWG 365 (423)
Q Consensus 300 ~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~--h~~~l~-~g~vy~wG 365 (423)
.+....+|.|+.|-......+ .... ....|..++...+ ..++-. ||.|+.|-
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~-----------~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASI-----------FQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEE-----------EEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEE-----------EEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 555667899999986542111 1111 2345666655433 233334 88888873
No 27
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.16 E-value=8 Score=36.51 Aligned_cols=235 Identities=8% Similarity=-0.035 Sum_probs=116.9
Q ss_pred ceEEEEcC----CcceEEEEcCCcEEEEecCCCCcccCCCCCCc--------cccc---eEeccCCCceEEEEcCCceeE
Q 014534 72 SLKALACG----GAHTLFLTETGCVYATGLNDFGQLGISENIGY--------SLEP---LRISGLKKEVVQISTGYHHSS 136 (423)
Q Consensus 72 ~i~~i~~g----~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~--------~~~p---~~~~~l~~~i~~i~~G~~~~~ 136 (423)
.|..++.. ....+.-..||.|.+|-............... ...| .....-...+..++......+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 284 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEE
Confidence 46555542 24456667789999997654322111000000 0001 111112236777776677777
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CCceEEEEEcCCcEEEEecCCCCccCCCCC
Q 014534 137 AITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQE 214 (423)
Q Consensus 137 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 214 (423)
.-..+|.|+.|-..... ....+.. ....|..++. .....+.-+.+|.|+.|-....
T Consensus 285 ~~~~d~~i~vwd~~~~~-------------~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-------- 342 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMK-------------CLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-------- 342 (464)
T ss_dssp EEETTSCEEEEETTTTE-------------EEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------
T ss_pred EEeCCCeEEEEECCCCc-------------EEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------
Confidence 78889999999653210 0111111 1233544443 3345566677888999854211
Q ss_pred CcccccccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC--CCCcce
Q 014534 215 SSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK--LPYSEE 292 (423)
Q Consensus 215 ~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~--~~~i~~ 292 (423)
.+..........|..++....+.+....+|.|..|-.....+ ...... ...+..
T Consensus 343 -------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~ 398 (464)
T 3v7d_B 343 -------------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITT 398 (464)
T ss_dssp -------------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEE
T ss_pred -------------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEE
Confidence 000000112235667777667777778899999995543111 011111 112333
Q ss_pred EEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE--CCcEEEEe
Q 014534 293 VVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWG 365 (423)
Q Consensus 293 i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~--~g~vy~wG 365 (423)
+.... ..++...+|.|+.|-......+ .... ......|..++.-....++-. +|.++.|-
T Consensus 399 ~~~~~-~~l~~~~dg~i~iwd~~~g~~~-----------~~~~-~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYVSD-NILVSGSENQFNIYNLRSGKLV-----------HANI-LKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEECS-SEEEEEETTEEEEEETTTCCEE-----------ESCT-TTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEeCC-CEEEEecCCeEEEEECCCCcEE-----------ehhh-ccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 44433 3455555889999986542111 0000 112345667766554444443 77777664
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.40 E-value=7.7 Score=34.83 Aligned_cols=205 Identities=9% Similarity=0.013 Sum_probs=101.5
Q ss_pred CceEEEEcC------CcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCc------eeEEE
Q 014534 71 HSLKALACG------GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH------HSSAI 138 (423)
Q Consensus 71 ~~i~~i~~g------~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~------~~~~l 138 (423)
..|..|+.. ....++-..++.|.+|-......+ .......-......|..++.... ..+.-
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 467777765 444666677888999965421110 00000000012235666655333 45666
Q ss_pred ecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec---CCceEEEEEcCCcEEEEecCCCCccCCCCCC
Q 014534 139 TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGKVLSWGAGGSGRLGHGQES 215 (423)
Q Consensus 139 t~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 215 (423)
..+|.|+.|-..... ....+.. ....|..++. .....+.-..+|.|+.|-......
T Consensus 92 ~~dg~i~v~d~~~~~-------------~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------- 150 (366)
T 3k26_A 92 GSRGIIRIINPITMQ-------------CIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL------- 150 (366)
T ss_dssp ETTCEEEEECTTTCC-------------EEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-------
T ss_pred cCCCEEEEEEchhce-------------EeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-------
Confidence 778999999643210 1111211 2335666665 334566667889999995432100
Q ss_pred cccccccccccccceeee--ccCCccEEEEeeC--CceeEEEecCCCEEEEecCCCCccCc-------CC--CCCC----
Q 014534 216 SILGFLRSTSEYTPRLIK--ELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLF-------QE--GNHA---- 278 (423)
Q Consensus 216 ~~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~-------~~--~~~~---- 278 (423)
...+. ......|..++.. ....+....+|.|+.|-......+.. .. ....
T Consensus 151 -------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
T 3k26_A 151 -------------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQ 217 (366)
T ss_dssp -------------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCE
T ss_pred -------------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccce
Confidence 00110 0112356666554 33445556789999995443111100 00 0000
Q ss_pred --CCCe--eec-CCCCcceEEeeCCeeEEEEcCCCEEEEeCCC
Q 014534 279 --RRPS--LIS-KLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 279 --~~p~--~v~-~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 316 (423)
..|. ... ....|..++......+....+|.|..|-...
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 218 KIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp EECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred eeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 0000 000 1124566655556666677899999998654
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=91.04 E-value=8.6 Score=34.71 Aligned_cols=240 Identities=10% Similarity=0.038 Sum_probs=116.2
Q ss_pred CceEEEEcCCcc--eEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC----CceeEEEecCCcE
Q 014534 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGEL 144 (423)
Q Consensus 71 ~~i~~i~~g~~~--~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G----~~~~~~lt~~G~v 144 (423)
..|..++...+. .+.-..||.|.+|-... ........+..-...|..++.. ....+.-..+|.|
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCC----------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 357777665433 33334688898885421 0111112222233478777754 4556666778999
Q ss_pred EEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC----CceEEEEEcCCcEEEEecCCCCccCCCCCCccccc
Q 014534 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (423)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~ 220 (423)
+.|-.... ...+..........|..++.. ....+..+.+|.|..|-......
T Consensus 82 ~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------ 137 (379)
T 3jrp_A 82 LIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------ 137 (379)
T ss_dssp EEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC------------
T ss_pred EEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc------------
Confidence 99964321 001111111123356666554 33566667889999996432210
Q ss_pred ccccccccceeeeccCCccEEEEeeC---------------CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec
Q 014534 221 LRSTSEYTPRLIKELEGVKVKIAAAG---------------FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS 285 (423)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g---------------~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~ 285 (423)
..+..+. .....|..++.. ....++-..+|.|+.|-....... ......+.
T Consensus 138 ------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~ 203 (379)
T 3jrp_A 138 ------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLE 203 (379)
T ss_dssp ------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-------EEEEEEEC
T ss_pred ------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-------eeeEEEEe
Confidence 0011111 111234444433 344555577899999843221000 00001111
Q ss_pred C-CCCcceEEeeC-----CeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCcee-EE-EE
Q 014534 286 K-LPYSEEVVCGG-----YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AA-IS 357 (423)
Q Consensus 286 ~-~~~i~~i~~G~-----~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~-~~-l~ 357 (423)
. ...|..++... ...+....||.|..|-....... .....+...-....|..++...+.. ++ -.
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 1 12455565443 34455677899999976542110 0001111011234566666654433 33 34
Q ss_pred -CCcEEEEec
Q 014534 358 -EGKILTWGW 366 (423)
Q Consensus 358 -~g~vy~wG~ 366 (423)
||.|+.|=.
T Consensus 276 ~dg~i~iw~~ 285 (379)
T 3jrp_A 276 GDNKVTLWKE 285 (379)
T ss_dssp SSSSEEEEEE
T ss_pred CCCcEEEEeC
Confidence 899999965
No 30
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=90.67 E-value=15 Score=36.89 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=34.6
Q ss_pred CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEe----cCCceeEEE-E-CCcEEEEecC
Q 014534 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVS----CGWKHTAAI-S-EGKILTWGWG 367 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~----~G~~h~~~l-~-~g~vy~wG~~ 367 (423)
..|++++..+|+||..|-...++. .........+.... ........+. .-..|++++ . ||+||+.|.+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd--p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV--PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE--GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc--CCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 357777777999999996543321 11111111111111 0111222221 224676554 4 9999999974
No 31
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=90.61 E-value=8.7 Score=34.04 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=118.8
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEc---CCcceEEEEcCCc
Q 014534 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALAC---GGAHTLFLTETGC 91 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~---g~~~~~~lt~~G~ 91 (423)
++|..+.+....++..++.-+++|++|.---. .+.... ... + ..++++|+.+-+ .....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~---~lp~~~---~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGS---QALQGS---KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSH---HHHTSE---ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhh---hCccCc---ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 44445555555555555556688888865322 121110 000 3 336778888865 1246788999998
Q ss_pred EEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEc--CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccce
Q 014534 92 VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPT 169 (423)
Q Consensus 92 v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~ 169 (423)
+.-.--.++.+- ..-..-..+. -.+.++.+.. +..+.+++|++|++|.+-..+...+|.......
T Consensus 92 iKr~~l~~~~~~------~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~------ 158 (276)
T 3no0_A 92 VKKIPLAEFEYK------AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ------ 158 (276)
T ss_dssp EEEEEGGGTTTC------STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE------
T ss_pred EEEEEHHHhhhh------cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE------
Confidence 887654433110 0000111111 1124554433 556799999999999998776655554333211
Q ss_pred EecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEE--ee
Q 014534 170 KVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA--AA 245 (423)
Q Consensus 170 ~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i--~~ 245 (423)
.+...++.+|+.+... ..+.+++|++|.+.-.-..++-..+++..... . + ..+..++.+ ..
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~---------~----i--~~~~~lv~~~~~~ 223 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTE---------V----S--GTKDTLVDLIPIK 223 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEE---------C----C--CSSSCEEEEEEES
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceE---------E----E--cCCCcEEEEEEeC
Confidence 1222235567665433 34678889999888876655544333321100 0 0 112233333 23
Q ss_pred CCceeEEEecCCCEEE--EecCCCCccC
Q 014534 246 GFLHSACIDENGRVYI--FGDRAVDKML 271 (423)
Q Consensus 246 g~~~~~~lt~~g~v~~--~G~n~~gqlg 271 (423)
+....++++++|++.. +-......++
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred CCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 4567888899999988 7655544443
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=90.36 E-value=11 Score=34.67 Aligned_cols=138 Identities=9% Similarity=0.005 Sum_probs=67.5
Q ss_pred ceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CCceEEEEEcCCcEEEEecCCCCccC
Q 014534 133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLG 210 (423)
Q Consensus 133 ~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~~G~n~~gqlg 210 (423)
...++...+|.|+.|-...... ...+.. ....|..++. .....+.-..+|.|+.|-.....
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~~~-------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--- 280 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEKTP-------------TGKLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN--- 280 (425)
T ss_dssp TEEEEECGGGCEEEEETTCSSC-------------SEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS---
T ss_pred CEEEEEcCCCeEEEEEcCCCce-------------eeeecc-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc---
Confidence 4456667788898886543110 011111 1223444433 34455556678889988432110
Q ss_pred CCCCCcccccccccccccceeeeccCCccEEEEeeCCc-eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CC
Q 014534 211 HGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL-HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LP 288 (423)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~ 288 (423)
....+. .....|..++.... ..++...+|.|+.|-...... ...+.. ..
T Consensus 281 -----------------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~ 331 (425)
T 1r5m_A 281 -----------------SQNCFY-GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTL-----------LALSIVDGV 331 (425)
T ss_dssp -----------------CSEEEC-CCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEE-----------EEEEECTTC
T ss_pred -----------------cceEec-CCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcE-----------eEecccCCc
Confidence 000111 11224555544332 455557788899985432110 111111 22
Q ss_pred CcceEEee--CCeeEEEEcCCCEEEEeCCC
Q 014534 289 YSEEVVCG--GYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 289 ~i~~i~~G--~~~~~~lt~~g~vy~wG~n~ 316 (423)
.|..++.. ....++-..+|.|+.|-...
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 45555543 23445566789999998643
No 33
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.56 E-value=12 Score=34.07 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=122.9
Q ss_pred hhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccc--eeeCccCCCceEEEEcCC-----cceEEEEc
Q 014534 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACGG-----AHTLFLTE 88 (423)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p--~~~~~~~~~~i~~i~~g~-----~~~~~lt~ 88 (423)
+|....+..+.++..++.-++.|++|..-..+ |....-...-.| ..++..++++|+.+.... ...+++|+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~---lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~ 117 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYD---LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATR 117 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGG---SCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEET
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcC
Confidence 45555555566666566666999999886543 222211122223 234444678898876543 46788999
Q ss_pred CCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEE--EEcCCceeEEEecCCcEEEEeCC--CCCCCCCCCCCCcc
Q 014534 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKN--SNGQLGLGKKAAKV 164 (423)
Q Consensus 89 ~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~--i~~G~~~~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~~ 164 (423)
+|.+.-.--..+-.. ...-..-..+.. .+.++. ++.+..+.+++|++|++|.+-.. .-...|.......
T Consensus 118 ~G~iKr~~l~~~~~~-----~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~- 190 (327)
T 3uc1_A 118 NGLVKKSKLTDFDSN-----RSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ- 190 (327)
T ss_dssp TSEEEEEEGGGGCCC-----CSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE-
T ss_pred CCEEEEeEHHHhhcc-----ccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee-
Confidence 998877653322110 000001111111 224443 34467789999999999999887 5544443322211
Q ss_pred cccceEecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEE
Q 014534 165 IPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI 242 (423)
Q Consensus 165 ~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~ 242 (423)
.+...+++.|+.+..- ..+.+++|++|.+--.-...+-..+++..... -..+.. .+..++.
T Consensus 191 -----~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~-----------~~~l~~-~~d~lv~ 253 (327)
T 3uc1_A 191 -----GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL-----------TVMYDR-RRGRLVG 253 (327)
T ss_dssp -----SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE-----------SSCCCT-TTCSEEE
T ss_pred -----eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE-----------EEEecC-CCCeEEE
Confidence 1222245667776553 34678889999877665444433322211000 000000 0112333
Q ss_pred E--eeCCceeEEEecCCCEEEEecCCCCccC
Q 014534 243 A--AAGFLHSACIDENGRVYIFGDRAVDKML 271 (423)
Q Consensus 243 i--~~g~~~~~~lt~~g~v~~~G~n~~gqlg 271 (423)
+ ..+....+++|++|++..+-......+|
T Consensus 254 ~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 254 ALIVDDDSELYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp EEEECTTCEEEEEEGGGCEEEEEGGGSCBCC
T ss_pred EEEeCCCccEEEEcCCCeEEEEehhhccccC
Confidence 2 2355678889999999888655444433
No 34
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.53 E-value=14 Score=34.77 Aligned_cols=269 Identities=8% Similarity=-0.023 Sum_probs=133.8
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCc-ceEEEEcCCcEEEEecCCCCcccCCC
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISE 107 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~-~~~~lt~~G~v~~wG~n~~gqlg~~~ 107 (423)
..+++.+.|+.|.+|-.... .....+.. ....|..++...+ ..+.-..||.|.+|-....
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-----------~~~~~~~~-h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~------- 193 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-----------KFLLQLSG-HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG------- 193 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEECSTTEEEEEETTSCEEEEETTTT-------
T ss_pred CEEEEEcCCCcEEEEECCCC-----------cEEEEEeC-CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC-------
Confidence 34555667777777753221 11122221 2235777776533 4455567899999964321
Q ss_pred CCCccccceEeccCCCceEEEEcC----CceeEEEecCCcEEEEeCCCCCCCCCCCCCCc---c----cccceEec--cc
Q 014534 108 NIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELYMWGKNSNGQLGLGKKAAK---V----IPIPTKVE--CL 174 (423)
Q Consensus 108 ~~~~~~~p~~~~~l~~~i~~i~~G----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~---~----~~~p~~i~--~~ 174 (423)
.....+..-...|..++.. ....+.-..+|.|..|-............... . ...+..+. .-
T Consensus 194 -----~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 194 -----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp -----EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred -----cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 1112222233466665542 24566667799999997654322211000000 0 00010111 11
Q ss_pred CCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCC--ceeEE
Q 014534 175 SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSAC 252 (423)
Q Consensus 175 ~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~ 252 (423)
....+..++......+.-..+|.|..|-..... +..........|..++... ...+.
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~---------------------~~~~~~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK---------------------CLYILSGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE---------------------EEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------EEEEecCCCCCEEEEEEcCCCCEEEE
Confidence 123466666666677777888999999542110 0000001122455554432 34555
Q ss_pred EecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCC
Q 014534 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSP 331 (423)
Q Consensus 253 lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p 331 (423)
-..+|.|+.|-.... + ....+.. ...|..++....+.+....||.|..|-.....+.
T Consensus 328 g~~dg~i~vwd~~~~-~----------~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~----------- 385 (464)
T 3v7d_B 328 ASMDTTIRIWDLENG-E----------LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK----------- 385 (464)
T ss_dssp EETTSCEEEEETTTT-E----------EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-----------
T ss_pred EeCCCcEEEEECCCC-c----------EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee-----------
Confidence 577888999854321 0 0111111 1246666666667777789999999986642111
Q ss_pred ccccCCCCCCCeEEEecCCceeEEEE-CCcEEEEec
Q 014534 332 ERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (423)
Q Consensus 332 ~~v~~~~~~~~i~~i~~G~~h~~~l~-~g~vy~wG~ 366 (423)
.... ......+..+..... .++.. +|.|+.|=.
T Consensus 386 ~~~~-~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 386 FSYH-HTNLSAITTFYVSDN-ILVSGSENQFNIYNL 419 (464)
T ss_dssp EEEE-CTTCCCEEEEEECSS-EEEEEETTEEEEEET
T ss_pred eeec-CCCCccEEEEEeCCC-EEEEecCCeEEEEEC
Confidence 1111 011223444444333 34444 999999976
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=87.65 E-value=15 Score=32.77 Aligned_cols=234 Identities=12% Similarity=0.024 Sum_probs=114.7
Q ss_pred CceEEEEcCCcc-eEEEEc-----CCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC-----ceeEEEe
Q 014534 71 HSLKALACGGAH-TLFLTE-----TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAIT 139 (423)
Q Consensus 71 ~~i~~i~~g~~~-~~~lt~-----~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~-----~~~~~lt 139 (423)
..|..|+...+. .++.+. ||.|.+|-..... ..+.....-...|..++... ...+.-.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-----------LKLLREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-----------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-----------ccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 468888776533 333333 7889999653211 11111111234788887754 4455566
Q ss_pred cCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEe--------cCCceEEEEEcCCcEEEEecCCCCccCC
Q 014534 140 VDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--------LGFEQSVAVTGGGKVLSWGAGGSGRLGH 211 (423)
Q Consensus 140 ~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~--------~G~~~~~~lt~~g~v~~~G~n~~gqlg~ 211 (423)
.+|.|+.|-.....+ ....+.. ....|..+. ......+.-..+|.|..|-......
T Consensus 88 ~dg~i~iwd~~~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEM------------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--- 151 (357)
T ss_dssp TTSCEEEECTTSCSS------------CSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---
T ss_pred CCCeEEEEeCCCCCc------------cEEEEEe-cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---
Confidence 789999996543210 0011111 122344442 2334555667889999995432110
Q ss_pred CCCCcccccccccccccceeeec---cCCccEEEEe------eCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCe
Q 014534 212 GQESSILGFLRSTSEYTPRLIKE---LEGVKVKIAA------AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPS 282 (423)
Q Consensus 212 ~~~~~~~~~~~~~~~~~p~~i~~---~~~~~i~~i~------~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 282 (423)
....+.. .....+..++ ......+.-..+|.|+.|-...... ..
T Consensus 152 ----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~ 204 (357)
T 3i2n_A 152 ----------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----------RW 204 (357)
T ss_dssp ----------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----------EE
T ss_pred ----------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----------ee
Confidence 0001110 0012344444 2334445556778999985433110 11
Q ss_pred eecCCCCcceEEee-----CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCcee--EE
Q 014534 283 LISKLPYSEEVVCG-----GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT--AA 355 (423)
Q Consensus 283 ~v~~~~~i~~i~~G-----~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~--~~ 355 (423)
.......|..++.. ....++-..+|.|+.|-......+. ........ .....|..++...+.. ++
T Consensus 205 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~--~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 205 ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK------GFASVSEK--AHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT------EEEEEEEE--CCSSCEEEEEEETTEEEEEE
T ss_pred ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc------ceeeeccC--CCcCCEEEEEECCCCCcEEE
Confidence 11122245555543 2445556778999998754321110 00000000 1344677776665443 33
Q ss_pred E-E-CCcEEEEec
Q 014534 356 I-S-EGKILTWGW 366 (423)
Q Consensus 356 l-~-~g~vy~wG~ 366 (423)
. . ||.|+.|=.
T Consensus 277 ~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 277 TAGGAGGLHLWKY 289 (357)
T ss_dssp EEETTSEEEEEEE
T ss_pred EEeCCCcEEEeec
Confidence 3 3 899999976
No 36
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=87.63 E-value=16 Score=33.20 Aligned_cols=247 Identities=9% Similarity=-0.007 Sum_probs=116.0
Q ss_pred CceEEEEcC---CcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC-----ceeEEEecCC
Q 014534 71 HSLKALACG---GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDG 142 (423)
Q Consensus 71 ~~i~~i~~g---~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~-----~~~~~lt~~G 142 (423)
..|..++.. ....+.-..+|.|.+|-.... .+.........+..+.... ...++-..+|
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-------------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-------------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-------------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 457777753 344555667899999964321 1111112334555554432 2456667789
Q ss_pred cEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCC--c-eEEEEEcCCcEEEEecCCCCccCCCCCCcccc
Q 014534 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--E-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (423)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 219 (423)
.|+.|-...... ...+.. ....|..++... . ..+.-..+|.|..|-.......-.... .
T Consensus 167 ~v~~~d~~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~----~ 228 (408)
T 4a11_B 167 KVQLCDLKSGSC-------------SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD----Q 228 (408)
T ss_dssp SEEEEESSSSCC-------------CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC----T
T ss_pred eEEEEeCCCcce-------------eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc----c
Confidence 999996542111 111111 123455555432 2 245567889999996543221000000 0
Q ss_pred cccccccccceeeeccCCccEEEEeeCC--ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC-CcceEEee
Q 014534 220 FLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEVVCG 296 (423)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~-~i~~i~~G 296 (423)
. .......+..........|..++... .+.+....+|.++.|-.......-.... ......... .+......
T Consensus 229 ~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 229 H-NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG----KVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp T-TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----CCCCCCSSCCCCEECCSS
T ss_pred c-ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc----cccccccccceeEEecCC
Confidence 0 00000000001111223566665543 3455567889999996543221110000 000000000 11111122
Q ss_pred CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCce--eEEEE-CCcEEEEec
Q 014534 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH--TAAIS-EGKILTWGW 366 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h--~~~l~-~g~vy~wG~ 366 (423)
....++...++.|+.|-......+ ..+. .....|..++...+. .+.-. ||.|+.|=.
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~-----------~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQI-----------TMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEE-----------EEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CceEEEEecCCEEEEEECcCCcce-----------eeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 345566678899999986542111 1111 133466666655443 33333 899999987
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=87.17 E-value=16 Score=32.63 Aligned_cols=97 Identities=8% Similarity=-0.039 Sum_probs=49.6
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC--CcceEEEEcCCcEEEEecCCCCcccCC
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGIS 106 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~gqlg~~ 106 (423)
.++.+...++.|++|-.... .....+.. ....|..++.. ....+....||.|.+|-.....
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----- 107 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG-----------ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ----- 107 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----
T ss_pred CEEEEEeCCCEEEEEeCCCc-----------hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----
Confidence 34445556777777743221 11222222 22357777654 3445556678999999643211
Q ss_pred CCCCccccceEeccCCCceEEEEcC--CceeEEEecC-----CcEEEEeCC
Q 014534 107 ENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVD-----GELYMWGKN 150 (423)
Q Consensus 107 ~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~-----G~vy~~G~n 150 (423)
....+. ....|..++.. ....++...+ |.|+.|-..
T Consensus 108 -------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 108 -------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp -------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred -------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 111111 33456665543 3344445555 888888654
No 38
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=86.82 E-value=19 Score=33.13 Aligned_cols=148 Identities=10% Similarity=-0.003 Sum_probs=76.0
Q ss_pred EEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCC---cceEEEEcCCcEEEEecCCCCcccCC
Q 014534 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGIS 106 (423)
Q Consensus 30 ~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~---~~~~~lt~~G~v~~wG~n~~gqlg~~ 106 (423)
++.+...+|.|++|-....|.+.. ....+.. ....|..++... ...+.-..||.|.+|-....+..
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~-------~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--- 117 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDK-------NVPLVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--- 117 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCT-------TCCCBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS---
T ss_pred EEEEEcCCCEEEEEECccCCCCCC-------CCceEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc---
Confidence 333456788888887655443310 0011111 123577777643 34444567899999975432211
Q ss_pred CCCCccccceEeccCCCceEEEEcCCc---eeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEec-ccCCceeEEE
Q 014534 107 ENIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQA 182 (423)
Q Consensus 107 ~~~~~~~~p~~~~~l~~~i~~i~~G~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~-~~~~~~i~~i 182 (423)
.........+..-...|..++.... ..+.-..+|.|+.|-.... .....+. ......|..+
T Consensus 118 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 118 --LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------------AAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp --SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-------------EEEEEECTTTCCSCEEEE
T ss_pred --cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-------------CccEEEecCCCCCceEEE
Confidence 0000112233333457777776433 4555567899999965321 0111110 1122345555
Q ss_pred ec--CCceEEEEEcCCcEEEEec
Q 014534 183 AL--GFEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 183 ~~--G~~~~~~lt~~g~v~~~G~ 203 (423)
+. .....+.-..+|.|+.|-.
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEET
T ss_pred EECCCCCEEEEEecCCcEEEEeC
Confidence 54 3345555667889999954
No 39
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=86.78 E-value=15 Score=31.95 Aligned_cols=224 Identities=7% Similarity=-0.100 Sum_probs=114.6
Q ss_pred CceEEEEcC-CcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEc--CCceeEEEecCCcEEEE
Q 014534 71 HSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMW 147 (423)
Q Consensus 71 ~~i~~i~~g-~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~ 147 (423)
..|..|+.. ....+.-..||.|.+|-.... .....+......|..++. .....+.-..+|.|..|
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 357776652 233445567899999964221 112222222345655544 34455666778888887
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccc
Q 014534 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (423)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~ 227 (423)
-...... . .....+. .....|..++......+.-+.+|.|..|-..
T Consensus 87 ~~~~~~~------~----~~~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~----------------------- 132 (313)
T 3odt_A 87 PLFATSG------E----DPLYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWKEG----------------------- 132 (313)
T ss_dssp ETTCCTT------S----CC-CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETT-----------------------
T ss_pred EeeecCC------C----Ccccchh-hcccCEEEEEecCCEEEEEeCCCCEEEEcCC-----------------------
Confidence 6432110 0 0001111 1233566666666677777889999999410
Q ss_pred cceeeeccCCccEEEEee---CCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec--CCCCcceEEee-CCeeE
Q 014534 228 TPRLIKELEGVKVKIAAA---GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS--KLPYSEEVVCG-GYHTC 301 (423)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~--~~~~i~~i~~G-~~~~~ 301 (423)
.+..........+..+.. .....+....+|.++.|-... ....+. ....+..++.. ....+
T Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~ 199 (313)
T 3odt_A 133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFI 199 (313)
T ss_dssp EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEEECSSCSSCEEEEEEEETTEEE
T ss_pred cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEEEeccCcccEEEEEEcCCCeEE
Confidence 000000111223444433 445556667889999994110 001111 11234444432 22355
Q ss_pred EEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEE-E-CCcEEEEec
Q 014534 302 VLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-S-EGKILTWGW 366 (423)
Q Consensus 302 ~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l-~-~g~vy~wG~ 366 (423)
+...+|.|+.|-...... ...+. .....|..++...+..++. . ||.|+.|-.
T Consensus 200 ~~~~dg~i~i~d~~~~~~-----------~~~~~--~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGDV-----------LRTYE--GHESFVYCIKLLPNGDIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEETTSEEEEEETTTCCE-----------EEEEE--CCSSCEEEEEECTTSCEEEEETTSEEEEECT
T ss_pred EccCCCeEEEEECCchhh-----------hhhhh--cCCceEEEEEEecCCCEEEEecCCEEEEEEC
Confidence 667889999998654211 11111 1334677777665543444 4 999999975
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.57 E-value=39 Score=36.52 Aligned_cols=220 Identities=11% Similarity=0.047 Sum_probs=101.0
Q ss_pred EEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC-CcceEEEEcCCcEEEEecCCCCcccCCCC
Q 014534 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISEN 108 (423)
Q Consensus 30 ~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g-~~~~~~lt~~G~v~~wG~n~~gqlg~~~~ 108 (423)
.+.+.+.++.|..|-.... ....+.. ....|..++.. ....+....+|.|++|-.....
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~------------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~------- 1076 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTG------------DYVFLQA-HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR------- 1076 (1249)
T ss_dssp CEEEECSSSBEEEEETTTT------------EEECCBC-CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-------
T ss_pred EEEEEcCCCEEEEEECCCC------------ceEEEec-CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-------
Confidence 4445556777777754321 1111111 12346666543 3445566778999999653211
Q ss_pred CCccccceEeccCCCceEEEEc--CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC-
Q 014534 109 IGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG- 185 (423)
Q Consensus 109 ~~~~~~p~~~~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G- 185 (423)
....+..-...|..++. -....+.-..+|.|+.|-......+. .+.. ....|..++..
T Consensus 1077 -----~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~-------------~l~~-h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1077 -----IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH-------------ELKG-HNGCVRCSAFSL 1137 (1249)
T ss_dssp -----CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB-------------CCCC-CSSCEEEEEECS
T ss_pred -----eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee-------------eecc-CCCcEEEEEECC
Confidence 11112212224444433 23345556667888888543221110 0100 12234444433
Q ss_pred -CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeee---ccCCccEEEEeeCCceeEEEecCCCEEE
Q 014534 186 -FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK---ELEGVKVKIAAAGFLHSACIDENGRVYI 261 (423)
Q Consensus 186 -~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~---~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 261 (423)
....+.-+.+|.|+.|-......+.. ..|.... ......|..++......++++.+|.|..
T Consensus 1138 dg~~lat~~~dg~i~vwd~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~v 1202 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWNVSDGQLLHS---------------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKW 1202 (1249)
T ss_dssp SSSEEEEEETTSCCCEEESSSSCCCCC---------------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEE---------------eccccccccccccCceEEEEEECCCCCEEEECCCeEEE
Confidence 33444456788888886543211111 0010000 1112245555555554455555688888
Q ss_pred EecCCCCccCcCCCCCCCCCeeec-CCCCcceEEe--eCCeeEEEEcCCCEEEEeC
Q 014534 262 FGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVC--GGYHTCVLTSGGELYTWGS 314 (423)
Q Consensus 262 ~G~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~i~~--G~~~~~~lt~~g~vy~wG~ 314 (423)
|-......+. .+. ....|..++. .....+....+|.++.|-.
T Consensus 1203 wd~~~g~~~~-----------~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1203 WNVATGDSSQ-----------TFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp BCSSSCBCCC-----------CCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EECCCCceee-----------eeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 8533211110 011 1112333333 3345566778899999863
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=86.44 E-value=18 Score=32.51 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=54.6
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCccccee-eCccCCCceEEEEcCCcceEE--EEcCCcEEEEecCCCCcccC
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVV-CSAFEKHSLKALACGGAHTLF--LTETGCVYATGLNDFGQLGI 105 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~-~~~~~~~~i~~i~~g~~~~~~--lt~~G~v~~wG~n~~gqlg~ 105 (423)
..+.+.+.|+.|.+|-.....+.+ ....|.. +.. ....|..++...+..++ -..||.|.+|-....
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~----- 108 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTG-HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----- 108 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECC-CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS-----
T ss_pred CEEEEEcCCCEEEEEECCcCCccc-----ccccccchhcc-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-----
Confidence 456666788888888654321111 0112221 221 22357777765444433 345888999964321
Q ss_pred CCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEEeC
Q 014534 106 SENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (423)
Q Consensus 106 ~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~ 149 (423)
.....+..-...|..++.. ....+.-..+|.|..|-.
T Consensus 109 -------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 109 -------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp -------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred -------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 0111222233467777654 334555667899999964
No 42
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=85.72 E-value=19 Score=32.05 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=97.1
Q ss_pred CceEEEEcCC-----cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEE--------cCCceeEE
Q 014534 71 HSLKALACGG-----AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--------TGYHHSSA 137 (423)
Q Consensus 71 ~~i~~i~~g~-----~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~--------~G~~~~~~ 137 (423)
..|..++... ...+.-..+|.|.+|-..... .....+......|..+. ......+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEecccceEEEeeccccccCCCccEEEE
Confidence 4577777754 344555678999999643211 01122222334666663 23345566
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccC---CceeEEEe------cCCceEEEEEcCCcEEEEecCCCCc
Q 014534 138 ITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS---GIFTKQAA------LGFEQSVAVTGGGKVLSWGAGGSGR 208 (423)
Q Consensus 138 lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~---~~~i~~i~------~G~~~~~~lt~~g~v~~~G~n~~gq 208 (423)
-..+|.|+.|-...... ....+.... ...+..++ ......+.-..+|.|+.|-....
T Consensus 135 ~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 200 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDD------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-- 200 (357)
T ss_dssp EETTSCEEEECTTSCSS------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--
T ss_pred EeCCCeEEEEeCCCCCC------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--
Confidence 67789999996543210 011111111 22455554 33445555677899999954321
Q ss_pred cCCCCCCcccccccccccccceeeeccCCccEEEEeeC-----CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCee
Q 014534 209 LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG-----FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL 283 (423)
Q Consensus 209 lg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~ 283 (423)
.+..... ....|..++.. ....++-..+|.|+.|-......+ .......
T Consensus 201 -------------------~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~ 254 (357)
T 3i2n_A 201 -------------------ALRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVS 254 (357)
T ss_dssp -------------------EEEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEE
T ss_pred -------------------ceeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeec
Confidence 0011111 12245555543 344455577889998853321000 0000001
Q ss_pred e-cCCCCcceEEeeCC---eeEEEEcCCCEEEEeCCC
Q 014534 284 I-SKLPYSEEVVCGGY---HTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 284 v-~~~~~i~~i~~G~~---~~~~lt~~g~vy~wG~n~ 316 (423)
+ .....|..++.... ..+.-..||.|+.|-...
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 1 12224666665443 344456889999998654
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=85.09 E-value=23 Score=32.52 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=51.8
Q ss_pred eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC--CCCcceEEeeCC---eeEEEEcCCCEEEEeCCCCCCCCCC
Q 014534 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK--LPYSEEVVCGGY---HTCVLTSGGELYTWGSNENGCLGIG 323 (423)
Q Consensus 249 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~--~~~i~~i~~G~~---~~~~lt~~g~vy~wG~n~~gqlG~~ 323 (423)
..++-..+|.|..|-..... .+..+.. ...|..++.... ..+.-..||.|+.|-.....++
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--- 326 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--- 326 (420)
T ss_dssp EEEEEETTSCEEEEETTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---
T ss_pred EEEEEcCCCeEEEEECCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc---
Confidence 33445678888888543211 1111111 124556655433 4555678899999986542110
Q ss_pred CCCCcCCCccccCCCCCCCeEEEecCCceeEEEE--CCcEEEEec
Q 014534 324 SIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWGW 366 (423)
Q Consensus 324 ~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~--~g~vy~wG~ 366 (423)
...+. ......|..+...+...++.. ||.|..|-.
T Consensus 327 -------~~~~~-~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 327 -------VGEFL-INEGTPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -------SEEEE-ESTTSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred -------hhhhh-ccCCCCceEEEeCCCCEEEEecCCccEEEEec
Confidence 11111 113345666666555556555 899999976
No 44
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=84.73 E-value=37 Score=34.60 Aligned_cols=111 Identities=8% Similarity=0.010 Sum_probs=59.9
Q ss_pred ceEEEEcCC--cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC----CceeEEEecCCcEE
Q 014534 72 SLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (423)
Q Consensus 72 ~i~~i~~g~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G----~~~~~~lt~~G~vy 145 (423)
.|..++... ...+.-..||.|.+|-... ........+..-...|..++.. ....+.-..||.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~----------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCC----------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 466666543 2344445689999995321 0111112222233478888764 44566677899999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC----CceEEEEEcCCcEEEEecC
Q 014534 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G----~~~~~~lt~~g~v~~~G~n 204 (423)
.|-.... ...+..........|..++.. ....+.-+.+|.|..|-..
T Consensus 81 vwd~~~~------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 81 IWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEECCCC------------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 9964321 001111111123356666654 3456666788999999643
No 45
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=84.60 E-value=21 Score=31.60 Aligned_cols=237 Identities=10% Similarity=-0.053 Sum_probs=114.8
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC--Cc-ceEEEEcCCcEEEEec-CCCCccc
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GA-HTLFLTETGCVYATGL-NDFGQLG 104 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~-~~~~lt~~G~v~~wG~-n~~gqlg 104 (423)
..+++...++.|++|-.... .....+..+. .....|..++.. .. ..+.-..+|.|++|-. .. ++
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~--------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~-- 91 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQ--------AKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-PS-- 91 (342)
T ss_dssp TEEEEEETTSEEEEEEEETT--------TTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-SS--
T ss_pred CEEEEEcCCCeEEEEEeCCC--------Cccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-Cc--
Confidence 44555568888888865431 1011122222 122356666653 33 4555667889999854 21 11
Q ss_pred CCCCCCccccceEecc--CCCceEEEEcC-CceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEE
Q 014534 105 ISENIGYSLEPLRISG--LKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ 181 (423)
Q Consensus 105 ~~~~~~~~~~p~~~~~--l~~~i~~i~~G-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~ 181 (423)
...+.. ....|..++.. ....+.-..+|.|+.|-......- .......+..... ....|..
T Consensus 92 ----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~-~~~~v~~ 155 (342)
T 1yfq_A 92 ----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-----VIAVKNLNSNNTK-VKNKIFT 155 (342)
T ss_dssp ----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----CEEEEESCSSSSS-SCCCEEE
T ss_pred ----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc-----cccccCCeeeEEe-eCCceEE
Confidence 123332 33466666543 556666778899999953210000 0000000000000 1235667
Q ss_pred EecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCC---ceeEEEecCCC
Q 014534 182 AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGR 258 (423)
Q Consensus 182 i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~ 258 (423)
++......++.+.++.|+.|-....+. .............|..++... ...++-..+|.
T Consensus 156 ~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 156 MDTNSSRLIVGMNNSQVQWFRLPLCED------------------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTT------------------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred EEecCCcEEEEeCCCeEEEEECCcccc------------------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 776666666678889999996542100 000111111122455555443 44455577888
Q ss_pred EEEEecCCCCccCcCCCCCCCCCeeecC----------CCCcceEEee--CCeeEEEEcCCCEEEEeCCC
Q 014534 259 VYIFGDRAVDKMLFQEGNHARRPSLISK----------LPYSEEVVCG--GYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 259 v~~~G~n~~gqlg~~~~~~~~~p~~v~~----------~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~ 316 (423)
+..|-....+. .........+.. ...|..++.. ....+....+|.|+.|-...
T Consensus 218 i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 218 VAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 88885443210 000001111111 1135555443 23445566788999997543
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.25 E-value=39 Score=34.39 Aligned_cols=225 Identities=11% Similarity=-0.041 Sum_probs=111.2
Q ss_pred ceEEEEcCCcc--eEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEc--CCceeEEEecCCcEEEE
Q 014534 72 SLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMW 147 (423)
Q Consensus 72 ~i~~i~~g~~~--~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~ 147 (423)
.|..|+...+. .++-..+|.|.+|-.... .....+......|..++. .....+.-..+|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 56666655333 344456888999854221 111222223335665554 34456666778999999
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccc
Q 014534 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (423)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (423)
-..... ....+.. ....|..++.. ....+.-+.+|.|..|-.....
T Consensus 83 ~~~~~~-------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------------ 130 (814)
T 3mkq_A 83 NYNTGE-------------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------------ 130 (814)
T ss_dssp ETTTCC-------------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------------
T ss_pred ECCCCc-------------EEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------------
Confidence 654211 1111111 12235555443 3345555678889988542110
Q ss_pred cccceeeeccCCccEEEEeeCC---ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec-CC-CCcceEEe----e
Q 014534 226 EYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KL-PYSEEVVC----G 296 (423)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~-~~-~~i~~i~~----G 296 (423)
.....+. .....|..++... ...+....+|.|+.|-..... ....+. .. ..+..++. .
T Consensus 131 -~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 131 -ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp -EEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTT
T ss_pred -eEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCC
Confidence 0001111 1122455555432 344445678999999543210 111111 11 23444443 2
Q ss_pred CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCcee--EEEE-CCcEEEEec
Q 014534 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT--AAIS-EGKILTWGW 366 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~--~~l~-~g~vy~wG~ 366 (423)
....++...+|.|+.|-..... ....+. .....|..++...+.. +.-. ||.|+.|-.
T Consensus 198 ~~~l~~~~~dg~i~~~d~~~~~-----------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 198 KPYMITASDDLTIKIWDYQTKS-----------CVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp CCEEEEECTTSEEEEEETTTTE-----------EEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCEEEEEECCCCc-----------EEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3344556678999999754311 111122 1234677776655443 3333 899999976
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=84.22 E-value=25 Score=32.16 Aligned_cols=109 Identities=10% Similarity=0.023 Sum_probs=55.4
Q ss_pred CceEEEEcCCc---ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccC------CCceEEEEcCC---ceeEEE
Q 014534 71 HSLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGL------KKEVVQISTGY---HHSSAI 138 (423)
Q Consensus 71 ~~i~~i~~g~~---~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l------~~~i~~i~~G~---~~~~~l 138 (423)
..|..++...+ ..+.-..+|.|.+|-..... ....+... ...|..++... ...+.-
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK------------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE------------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC------------cceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 35667766543 23333578889999643211 11111111 34577766543 344455
Q ss_pred ecCC---cEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec---CCceEEEEEcCCcEEEEec
Q 014534 139 TVDG---ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 139 t~~G---~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~~~~~lt~~g~v~~~G~ 203 (423)
..+| .|+.|-.....+.- ..+.......|..++. .....+.-..+|.|+.|-.
T Consensus 234 ~~d~~~~~i~~~d~~~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNANTPL------------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp ECCSSSCCCCEEETTSTTSCS------------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred ECCCCCceEEEEeCCCCCCCc------------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 5566 88888654321100 0010011224555554 4456666678899999943
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=84.10 E-value=22 Score=31.40 Aligned_cols=112 Identities=4% Similarity=0.037 Sum_probs=52.0
Q ss_pred cEEEEeeCCc--eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEee-CCeeEEEEcCCCEEEEeCC
Q 014534 239 KVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG-GYHTCVLTSGGELYTWGSN 315 (423)
Q Consensus 239 ~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G-~~~~~~lt~~g~vy~wG~n 315 (423)
.|..++.... ..+.-..+|.+..|-.....++ ..+.....+..+... ..+.++...++.|+.|-..
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----------YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----------EEEECSSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----------eeecCCceEEeeecCCCCceeeccCCCEEEEEECC
Confidence 4555554432 3333467888888854331111 112222234444432 2345566778899998754
Q ss_pred CCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEE--E-CCcEEEEe
Q 014534 316 ENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI--S-EGKILTWG 365 (423)
Q Consensus 316 ~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l--~-~g~vy~wG 365 (423)
....+.. .. ..............|..++...+...++ . ||.|+.|=
T Consensus 286 ~~~~~~~--~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 286 GKIIVDE--LK--QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp TTEEEEE--EC--CC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCeEEEe--cc--ccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3211100 00 0000011111334677776654433333 3 89999984
No 49
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=83.56 E-value=40 Score=34.10 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=14.2
Q ss_pred CcceEEEEc-CCcEEEEec
Q 014534 80 GAHTLFLTE-TGCVYATGL 97 (423)
Q Consensus 80 ~~~~~~lt~-~G~v~~wG~ 97 (423)
..|+++... +|+||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG 459 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGG 459 (695)
T ss_dssp BSCEEEEETTTTEEEEECC
T ss_pred cceEEEEEccCCEEEEEcC
Confidence 457777776 999999985
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=81.78 E-value=62 Score=34.96 Aligned_cols=191 Identities=13% Similarity=0.137 Sum_probs=88.7
Q ss_pred ceEEEEcC--CcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC-CceeEEEecCCcEEEEe
Q 014534 72 SLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMWG 148 (423)
Q Consensus 72 ~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G-~~~~~~lt~~G~vy~~G 148 (423)
.|..++.. ....+.-..||.|.+|-..... ...+......|..++.. ....+....+|.|+.|-
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-------------YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTE-------------EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-------------eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 45555443 3334444568888888653211 11112223456666543 44556677789999997
Q ss_pred CCCCCCCCCCCCCCcccccceEecccCCceeEEEe--cCCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccccccc
Q 014534 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (423)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~--~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~ 226 (423)
...... ...+.. ....|..++ ......+.-+.+|.|+.|-......+.
T Consensus 1072 ~~~~~~-------------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~---------------- 1121 (1249)
T 3sfz_A 1072 VITGRI-------------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH---------------- 1121 (1249)
T ss_dssp TTTTCC-------------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB----------------
T ss_pred CCCCce-------------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee----------------
Confidence 543110 011111 111222222 223344445567778887432211100
Q ss_pred ccceeeeccCCccEEEEeeCCc--eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeee-----cCCCCcceEEeeCCe
Q 014534 227 YTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI-----SKLPYSEEVVCGGYH 299 (423)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v-----~~~~~i~~i~~G~~~ 299 (423)
.+. .....|..++.... ..+.-..+|.|+.|-......+ ....|... .....|..++...+.
T Consensus 1122 ----~l~-~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1122 ----ELK-GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL------HSCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp ----CCC-CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC------CCCCCCC-------CCSCCCEEEECTTS
T ss_pred ----eec-cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE------EEeccccccccccccCceEEEEEECCCC
Confidence 000 11124555544433 3334467888888854331111 11111111 111246666665554
Q ss_pred eEEEEcCCCEEEEeCCC
Q 014534 300 TCVLTSGGELYTWGSNE 316 (423)
Q Consensus 300 ~~~lt~~g~vy~wG~n~ 316 (423)
..+++.+|.|..|-...
T Consensus 1191 ~~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1191 KTLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp SCEEEESSSEEEBCSSS
T ss_pred CEEEECCCeEEEEECCC
Confidence 44555568898887654
No 51
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.36 E-value=34 Score=31.04 Aligned_cols=223 Identities=10% Similarity=-0.057 Sum_probs=113.4
Q ss_pred EcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC-----ceeEEEecCCcEEEEeCCC
Q 014534 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWGKNS 151 (423)
Q Consensus 77 ~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~-----~~~~~lt~~G~vy~~G~n~ 151 (423)
+...+..+++|+.|++|..-...-...+..........-..+. -.++|+.+.... ...+++|++|.+.-.-..+
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 4567778889999999988654332221111111100001111 234788876643 4678899999888766443
Q ss_pred CCCCCCCCCCCcccccceEecccCCceeEE--EecCCceEEEEEcCCcEEEEecC--CCCccCCCCCCcccccccccccc
Q 014534 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAG--GSGRLGHGQESSILGFLRSTSEY 227 (423)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~--i~~G~~~~~~lt~~g~v~~~G~n--~~gqlg~~~~~~~~~~~~~~~~~ 227 (423)
+-.... . -...+..-++..++. ++.+..+.+++|++|++|.+-.. .--.+|+....
T Consensus 129 ~~~~~r----~----G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G------------ 188 (327)
T 3uc1_A 129 FDSNRS----G----GIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG------------ 188 (327)
T ss_dssp GCCCCS----S----CEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC------------
T ss_pred hhcccc----C----ceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC------------
Confidence 321100 0 000011112333333 34466789999999999999765 33333333211
Q ss_pred cceeeeccCCccEEEEeeC--CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEE--eeCCeeEEE
Q 014534 228 TPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV--CGGYHTCVL 303 (423)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~--~G~~~~~~l 303 (423)
. +.+...++..|+.+..- ....+++|++|.+...-...+.....+... ......-..-+.++.+. .+....+++
T Consensus 189 v-~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-~~~~~l~~~~d~lv~~~~~~~~~~i~l~ 266 (327)
T 3uc1_A 189 V-QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-VLTVMYDRRRGRLVGALIVDDDSELYAV 266 (327)
T ss_dssp E-ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-EESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred e-eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-EEEEEecCCCCeEEEEEEeCCCccEEEE
Confidence 0 01222234566665543 235677788887766543332221111100 00000001012233332 345678899
Q ss_pred EcCCCEEEEeCCCCCCCCC
Q 014534 304 TSGGELYTWGSNENGCLGI 322 (423)
Q Consensus 304 t~~g~vy~wG~n~~gqlG~ 322 (423)
|++|++.-+-..+-..+|.
T Consensus 267 T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 267 TSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp EGGGCEEEEEGGGSCBCCT
T ss_pred cCCCeEEEEehhhccccCC
Confidence 9999998887665544443
No 52
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=80.33 E-value=37 Score=31.44 Aligned_cols=109 Identities=9% Similarity=-0.043 Sum_probs=55.3
Q ss_pred CceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEe
Q 014534 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (423)
Q Consensus 71 ~~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (423)
..|..|+...+ +.+.-+.||.|.+|-..... ....+..-...+..++......+.-..++.++.|-
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~------------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc------------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 35777776543 33444678889998643211 11122222335666665555555566677777775
Q ss_pred CCCCCCCCCCCCCCcccccceEec-ccCCceeEEEecCCceEEEEEcCCcEEEEec
Q 014534 149 KNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~-~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~ 203 (423)
...... .. ..+. .................+....+|.+..|-.
T Consensus 216 ~~~~~~-----------~~-~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 216 VRVAEH-----------HV-ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp TTSSSC-----------EE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred ecccce-----------ee-EEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 322110 00 1111 1111222333334455666678888888854
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=80.10 E-value=45 Score=32.31 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=106.6
Q ss_pred CceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC-CceeEEEecCCcEEEEeC
Q 014534 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMWGK 149 (423)
Q Consensus 71 ~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G-~~~~~~lt~~G~vy~~G~ 149 (423)
..|..++. .. .+.-..||.|.+|-.. +.. ......|..++.. ....+....+|.|..|-.
T Consensus 340 ~~v~~~~~-~~-l~~~~~dg~i~~w~~~----------------~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~ 400 (615)
T 1pgu_A 340 KGITALTV-NP-LISGSYDGRIMEWSSS----------------SMH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI 400 (615)
T ss_dssp SCEEEEET-TT-TEEEETTSCEEETTTT----------------EEE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred CCEEEEEe-cC-cEEECCCCeEEEEEch----------------hhc-CcccCceEEEEECCCcEEEEEeCCCCEEEEEc
Confidence 46888888 66 6667788888888432 112 2223367676663 345556667788877732
Q ss_pred CCCCCCCCCCCCCcccccceEecccCCceeEEEecCCc-eEEEEEcCCcEEEEecCCCCccCCCCCCccccccccccccc
Q 014534 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYT 228 (423)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~ 228 (423)
.... . .. .+..++.... ..++...++.+..|-.... ..
T Consensus 401 ~~~~-----------------~--~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 439 (615)
T 1pgu_A 401 TKHE-----------------F--GS--QPKVASANNDGFTAVLTNDDDLLILQSFTG--------------------DI 439 (615)
T ss_dssp EEEE-----------------C--SS--CEEEEEECSSSEEEEEETTSEEEEEETTTC--------------------CE
T ss_pred ccCc-----------------c--cC--CceEEEEcCCCCEEEEeCCCceEEEeccCC--------------------ce
Confidence 1100 0 00 1222322222 2233335666666642110 00
Q ss_pred ceeeeccCCccEEEEeeCCceeEEEec-CCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEee--CCeeEEEE
Q 014534 229 PRLIKELEGVKVKIAAAGFLHSACIDE-NGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG--GYHTCVLT 304 (423)
Q Consensus 229 p~~i~~~~~~~i~~i~~g~~~~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G--~~~~~~lt 304 (423)
...+. ....+..++......++-.. +|.|+.|-.... ++ .+..+.. ...|..++.. ..+.+...
T Consensus 440 ~~~~~--~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~---------~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 440 IKSVR--LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EV---------SFDLKTPLRAKPSYISISPSETYIAAGD 507 (615)
T ss_dssp EEEEE--CSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EE---------EEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred eeecc--cCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-cc---------cccccCCccCceEEEEECCCCCEEEEcC
Confidence 00111 12245555555555555566 899999954331 00 0011111 1235555543 33455566
Q ss_pred cCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCC-----------ceeEEE-E-CCcEEEEec
Q 014534 305 SGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGW-----------KHTAAI-S-EGKILTWGW 366 (423)
Q Consensus 305 ~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~-----------~h~~~l-~-~g~vy~wG~ 366 (423)
.||.|+.|-......+ ..+. ......|..++... ...++. . ||.|+.|-.
T Consensus 508 ~dg~i~iw~~~~~~~~-----------~~~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 508 VMGKILLYDLQSREVK-----------TSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp TTSCEEEEETTTTEEE-----------ECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred CCCeEEEeeCCCCcce-----------eEee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 8899999986542111 1111 01334677777654 333333 3 899999987
No 54
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=79.20 E-value=32 Score=30.11 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=12.4
Q ss_pred CceeEEEECCcEEEEec
Q 014534 350 WKHTAAISEGKILTWGW 366 (423)
Q Consensus 350 ~~h~~~l~~g~vy~wG~ 366 (423)
..|+++..++++|+.|-
T Consensus 245 ~~~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAG 261 (301)
T ss_dssp BSCEEEEETTEEEEECC
T ss_pred cceeEEEECCEEEEEcC
Confidence 35665555999999984
No 55
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=78.95 E-value=35 Score=30.43 Aligned_cols=198 Identities=12% Similarity=0.011 Sum_probs=98.4
Q ss_pred CceEEEEcC----CcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC----ceeEEEecCC
Q 014534 71 HSLKALACG----GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDG 142 (423)
Q Consensus 71 ~~i~~i~~g----~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~----~~~~~lt~~G 142 (423)
..|..++.. ....+.-..||.|.+|-.... .......+......|..++... ...+....+|
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 457777764 345555677899999964321 0011122222334677777653 3566667889
Q ss_pred cEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC---------------CceEEEEEcCCcEEEEecCCCC
Q 014534 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---------------FEQSVAVTGGGKVLSWGAGGSG 207 (423)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G---------------~~~~~~lt~~g~v~~~G~n~~g 207 (423)
.|..|-...... ..+..+.. ....|..++.. ....+.-+.+|.|+.|-.....
T Consensus 126 ~i~v~d~~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 126 KVSVVEFKENGT-----------TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp EEEEEECCTTSC-----------CCEEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred cEEEEecCCCCc-----------eeeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 999997543211 01111111 12234444433 3455666788999999442110
Q ss_pred ccCCCCCCcccccccccccccceeeeccCCccEEEEeeCC-----ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCe
Q 014534 208 RLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPS 282 (423)
Q Consensus 208 qlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 282 (423)
....+..........|..++... ...+....+|.|..|-...... .....
T Consensus 194 -----------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~ 248 (379)
T 3jrp_A 194 -----------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG--------PWKKT 248 (379)
T ss_dssp -----------------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS--------CCEEE
T ss_pred -----------------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc--------cceee
Confidence 00001000011123566665543 3445557789999995433110 00001
Q ss_pred eec---CCCCcceEEeeC--CeeEEEEcCCCEEEEeCC
Q 014534 283 LIS---KLPYSEEVVCGG--YHTCVLTSGGELYTWGSN 315 (423)
Q Consensus 283 ~v~---~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n 315 (423)
.+. ....|..++... ...++...||.|+.|-.+
T Consensus 249 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 111 111355554432 344555788999998765
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.45 E-value=41 Score=30.86 Aligned_cols=187 Identities=10% Similarity=-0.051 Sum_probs=98.2
Q ss_pred eEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEecc-CCCceEEEEcC--CceeEEEecCCcEEEEeC
Q 014534 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG-LKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (423)
Q Consensus 73 i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~-l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~ 149 (423)
+..++......++...+|.|++|-..... ....+.. -...|..++.. ....++-..+|.|+.|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33456556777888899999999753211 1111111 13367666653 345555667899999965
Q ss_pred CCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccc
Q 014534 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (423)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p 229 (423)
.... ....+. .....|..++......+.-..+|.|+.|-...... ..
T Consensus 164 ~~~~-------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~ 210 (401)
T 4aez_A 164 ESQT-------------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-------------------QI 210 (401)
T ss_dssp TTCC-------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------------EE
T ss_pred cCCe-------------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-------------------ee
Confidence 3211 111111 12345677776666677778899999995431110 00
Q ss_pred eeeeccCCccEEEEeeC--CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec-CCCCcceEEeeC--CeeEEEE
Q 014534 230 RLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGG--YHTCVLT 304 (423)
Q Consensus 230 ~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~i~~G~--~~~~~lt 304 (423)
..+. .....|..++.. ....+.-..+|.|+.|-...... ...+. ....|..++... ...++..
T Consensus 211 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 211 GTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP-----------KFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE-----------EEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred eEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc-----------cEEecCCcceEEEEEECCCCCCEEEEe
Confidence 1111 112245555543 23444456788999995433100 01111 122455665543 2333333
Q ss_pred ---cCCCEEEEeCCC
Q 014534 305 ---SGGELYTWGSNE 316 (423)
Q Consensus 305 ---~~g~vy~wG~n~ 316 (423)
.||.|+.|-...
T Consensus 279 ~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 279 GGTMDKQIHFWNAAT 293 (401)
T ss_dssp CCTTTCEEEEEETTT
T ss_pred cCCCCCEEEEEECCC
Confidence 588999997553
No 57
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=77.12 E-value=42 Score=30.32 Aligned_cols=229 Identities=14% Similarity=0.060 Sum_probs=116.9
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccc--eeeCccCCCceEEEEcC-----CcceEEEE
Q 014534 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACG-----GAHTLFLT 87 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p--~~~~~~~~~~i~~i~~g-----~~~~~~lt 87 (423)
++|..+.+..+..+..++.-++.|++|-.-..+--..+.. ..-.| ..++..++++|+.+..- ..+.+++|
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~---a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T 113 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK---DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVT 113 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC---CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEe
Confidence 3444445555555555555668999998876542222221 11122 22333466778876432 23578889
Q ss_pred cCCcEEEEecCCCCcccCCCCCCccccceEeccCC--CceEEE--EcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCc
Q 014534 88 ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQI--STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK 163 (423)
Q Consensus 88 ~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~--~~i~~i--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~ 163 (423)
++|.+.-.--.++-... . ......-.+. +.++.+ ..+..+.+++|++|+++.+-.++....|.......
T Consensus 114 ~~G~iKrt~l~e~~~~~------r-~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~ 186 (323)
T 1wp5_A 114 RNGMVKKTELKHYKAQR------Y-SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVK 186 (323)
T ss_dssp TTSEEEEEEGGGGCCSC------C-SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEE
T ss_pred CCCeEEEeEHHHhhhcc------c-cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEE
Confidence 99988776543321110 0 1111111121 244433 34677899999999999998876655554222211
Q ss_pred ccccceEecccCCceeEEEec--CCc-eEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccE
Q 014534 164 VIPIPTKVECLSGIFTKQAAL--GFE-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKV 240 (423)
Q Consensus 164 ~~~~p~~i~~~~~~~i~~i~~--G~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i 240 (423)
. +...++..|+.+.. ... ..+.+|+.|..-..-...+-..+++.. -...++..+. .+..+
T Consensus 187 ~------i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k----------Gv~~~~~~~~-~~~~l 249 (323)
T 1wp5_A 187 G------MNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR----------GVVILRELKA-NPHRI 249 (323)
T ss_dssp C------CCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC----------CEECSCCCSS-SCCCE
T ss_pred E------EEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC----------CEECeeecCC-CCceE
Confidence 1 11123445555532 122 577778887755554444433333221 1111111111 11123
Q ss_pred EE--EeeCCceeEEEecCCCEEEEecCCCCcc
Q 014534 241 KI--AAAGFLHSACIDENGRVYIFGDRAVDKM 270 (423)
Q Consensus 241 ~~--i~~g~~~~~~lt~~g~v~~~G~n~~gql 270 (423)
+. +.......++++++|++...-.+.....
T Consensus 250 ~~~~~v~~~~~i~~it~~g~~ir~~~~~i~~~ 281 (323)
T 1wp5_A 250 SGFVVAQDSDTIYLQTEKSFIETIKVGDIRFS 281 (323)
T ss_dssp EEEEEECTTCEEEEEETTSCEEEEEGGGSCBC
T ss_pred EEEEEeCCCCeEEEEeCCCeEEEEEhhhcCcc
Confidence 32 2334667888999999887755444333
No 58
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=75.90 E-value=51 Score=30.64 Aligned_cols=258 Identities=12% Similarity=0.029 Sum_probs=118.5
Q ss_pred ceEEEEcCCc---ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC---CceeEEEecCCcEE
Q 014534 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELY 145 (423)
Q Consensus 72 ~i~~i~~g~~---~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G---~~~~~~lt~~G~vy 145 (423)
.|..|+.... ..+.-+.+|.|++|-......... ..........+..-...|..++.. ....+.-..+|.|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 4666665442 333445688999997643211000 000011112222223345555442 22555566789999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec---CCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccc
Q 014534 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (423)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~ 222 (423)
.|-.+...... ....+..........|..|+. +....+....+|.|+.|-......
T Consensus 208 vwd~~~~~~~~-------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------------- 266 (430)
T 2xyi_A 208 LWDINATPKEH-------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------------- 266 (430)
T ss_dssp EEETTSCCBGG-------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred EEeCCCCCCCC-------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence 99765421110 001111111112234666655 344555567899999996542210
Q ss_pred ccccccceeeeccCCccEEEEeeCCc---eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec-CCCCcceEEeeC-
Q 014534 223 STSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGG- 297 (423)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~-~~~~i~~i~~G~- 297 (423)
..+..........|..++.... ..+.-..+|.|..|-.....+ ....+. ....|..++...
T Consensus 267 ----~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 267 ----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp ----SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEECCSSCEEEEEECSS
T ss_pred ----CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEeecCCCCEEEEEECCC
Confidence 0111111111224555555432 233446788899986543111 111122 122466665433
Q ss_pred --CeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccC-CCCCCCeEEEecCCce--eEE-EE-CCcEEEEec
Q 014534 298 --YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQG-PFSESPVDQVSCGWKH--TAA-IS-EGKILTWGW 366 (423)
Q Consensus 298 --~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~~i~~i~~G~~h--~~~-l~-~g~vy~wG~ 366 (423)
...+.-..+|.|..|-....+..-.........|..+.. .-....|..++..... .++ .. ||.|..|-.
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 224445678899999865432210000000011222221 1123457777766543 333 33 899999976
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=75.60 E-value=44 Score=29.77 Aligned_cols=244 Identities=9% Similarity=-0.031 Sum_probs=111.4
Q ss_pred CceEEEEcCCcc--eEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEE
Q 014534 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (423)
Q Consensus 71 ~~i~~i~~g~~~--~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~ 146 (423)
..|..++...+. .++-..+|.|++|-.... .......+......|..++.. ....+.-..+|.|+.
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGN----------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETT----------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 456666654333 333336888988854211 000122222233466666653 344555567888888
Q ss_pred EeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccccc
Q 014534 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (423)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (423)
|-.... ...+..........|..++. .....+.-+.+|.|+.|-......
T Consensus 79 wd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---------------- 130 (372)
T 1k8k_C 79 WTLKGR------------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND---------------- 130 (372)
T ss_dssp EEEETT------------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----------------
T ss_pred EECCCC------------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc----------------
Confidence 854211 01111110111223555443 334555556788888885432110
Q ss_pred ccccceeeeccCCccEEEEeeCC--ceeEEEecCCCEEEEecCCCCccCcCCC----CCCCCCeeecCC----CCcceEE
Q 014534 225 SEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEG----NHARRPSLISKL----PYSEEVV 294 (423)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~----~~~~~p~~v~~~----~~i~~i~ 294 (423)
......+.......|..++... ...+.-..+|.++.|-......-..... ........+..+ ..|..++
T Consensus 131 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 131 -WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp -EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred -ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 0001111111123455655433 3344456789999996432110000000 000011111111 1355555
Q ss_pred eeC--CeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCc-eeEEEE-CCcEEEEec
Q 014534 295 CGG--YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWK-HTAAIS-EGKILTWGW 366 (423)
Q Consensus 295 ~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~-h~~~l~-~g~vy~wG~ 366 (423)
... .+.+....||.|+.|-......+ ..+. .....|..++...+ ..++.. |+.++.|-.
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADKKMAV-----------ATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTY 272 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGGTTEE-----------EEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCcee-----------EEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEc
Confidence 432 34455667888888875432111 1111 12335666655433 344444 889999876
No 60
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=75.40 E-value=51 Score=30.43 Aligned_cols=93 Identities=10% Similarity=0.112 Sum_probs=48.8
Q ss_pred eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEee--CCeeEEEEcCCCEEEEeCCCCCCCCCCCC
Q 014534 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSI 325 (423)
Q Consensus 249 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~ 325 (423)
+.+.-..++.|..|-...... ...+.. ...|..++.. ..+.+.-..||.|+.|-......
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~-----------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~------ 372 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMC-----------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC------ 372 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEE-----------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC------
T ss_pred EEEEEeCCCeEEEEECCCCce-----------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------
Confidence 344456788899995432110 011111 1235455432 34555667889999996543111
Q ss_pred CCcCCCccccCCCCCCCeEEEecCCceeEEE--E-CCcEEEEe
Q 014534 326 DVLHSPERVQGPFSESPVDQVSCGWKHTAAI--S-EGKILTWG 365 (423)
Q Consensus 326 ~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l--~-~g~vy~wG 365 (423)
...+. .....|..++...+...++ . ||.|..|-
T Consensus 373 -----~~~~~--~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 373 -----MKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp -----CEEEE--CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred -----EEEEc--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 11222 1334677777765543333 3 88888884
No 61
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=75.40 E-value=44 Score=29.67 Aligned_cols=252 Identities=11% Similarity=0.093 Sum_probs=115.0
Q ss_pred EEeeccCCcEEEEeEcCCCCCcCCCCCCCcccce-eeCccCCCceEEEEcCCcceEEE--EcCCcEEEEecCCCCcccCC
Q 014534 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV-VCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGIS 106 (423)
Q Consensus 30 ~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~-~~~~~~~~~i~~i~~g~~~~~~l--t~~G~v~~wG~n~~gqlg~~ 106 (423)
.+.+.+.|+.|.+|-.... ...+. .+.. ....|..++......+++ ..||.|.+|-.....
T Consensus 50 ~l~tgs~D~~v~vW~~~~~----------~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~----- 113 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDE----------RLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK----- 113 (321)
T ss_dssp EEEEEETTSCEEEEEEETT----------EEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----
T ss_pred EEEEEcCCCCEEEEECCCC----------Ceeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----
Confidence 5666778888888854321 01111 1111 123577776655444444 458899999543211
Q ss_pred CCCCccccceEeccCCCceE--EEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec
Q 014534 107 ENIGYSLEPLRISGLKKEVV--QISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184 (423)
Q Consensus 107 ~~~~~~~~p~~~~~l~~~i~--~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~ 184 (423)
....+..-...+. .++.-....+.-..+|.|..|...... ....+.. ....|..++.
T Consensus 114 -------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-------------~~~~~~~-~~~~v~~~~~ 172 (321)
T 3ow8_A 114 -------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-------------KEYSLDT-RGKFILSIAY 172 (321)
T ss_dssp -------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-------------EEEEEEC-SSSCEEEEEE
T ss_pred -------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-------------eeEEecC-CCceEEEEEE
Confidence 1111111111222 222233344455567888888653210 0111111 1223444443
Q ss_pred C--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeecc--CCccEEEEeeCCc--eeEEEecCCC
Q 014534 185 G--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGFL--HSACIDENGR 258 (423)
Q Consensus 185 G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~--~~~~lt~~g~ 258 (423)
. ....+.-..+|.|..|-.... ..+..+ ....|..++.... ..+.-..+|.
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATG-----------------------KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTT-----------------------EEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCC-----------------------cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 2 334444567788888843211 011111 1113344433322 3333456788
Q ss_pred EEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEee--CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCcccc
Q 014534 259 VYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQ 335 (423)
Q Consensus 259 v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 335 (423)
|..|-...... ...+.. ...|..++.. ..+.+.-..||.|..|-...... ...+.
T Consensus 230 i~iwd~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-----------~~~~~ 287 (321)
T 3ow8_A 230 IKIYDVQHANL-----------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-----------VHTFF 287 (321)
T ss_dssp EEEEETTTCCE-----------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEEC
T ss_pred EEEEECCCcce-----------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE-----------EEEEc
Confidence 88885332110 111111 1235555543 23445566789999997543111 11111
Q ss_pred CCCCCCCeEEEecCCcee-EE-EE-CCcEEEEe
Q 014534 336 GPFSESPVDQVSCGWKHT-AA-IS-EGKILTWG 365 (423)
Q Consensus 336 ~~~~~~~i~~i~~G~~h~-~~-l~-~g~vy~wG 365 (423)
-....|..++...+.. ++ -. ||.|..|-
T Consensus 288 --~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 288 --DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp --CCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred --CCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 1234677776654432 33 23 88898884
No 62
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=75.04 E-value=76 Score=32.25 Aligned_cols=234 Identities=10% Similarity=-0.004 Sum_probs=114.5
Q ss_pred eeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC----CcceEEEEcCCcEEEEecCCCCcc
Q 014534 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG----GAHTLFLTETGCVYATGLNDFGQL 103 (423)
Q Consensus 28 ~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g----~~~~~~lt~~G~v~~wG~n~~gql 103 (423)
...+.+...+|.|.+|-... ........+.. ....|..|+.. ....+.-..||.|++|-....
T Consensus 21 g~~latg~~dg~I~vwd~~~---------~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~--- 87 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEG---------ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG--- 87 (753)
T ss_dssp SCCEEEEETTTEEEEEEEET---------TEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT---
T ss_pred CCeEEEEECCCcEEEEecCC---------CCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC---
Confidence 34555666888888885331 01111112221 22367777764 345556677899999964321
Q ss_pred cCCCCCCccccceEeccCCCceEEEEcC----CceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCcee
Q 014534 104 GISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (423)
Q Consensus 104 g~~~~~~~~~~p~~~~~l~~~i~~i~~G----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i 179 (423)
.......+......|..++.. ....+.-+.+|.|+.|-...... ..+..+.. ....|
T Consensus 88 -------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----------~~~~~~~~-~~~~v 148 (753)
T 3jro_A 88 -------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----------TSPIIIDA-HAIGV 148 (753)
T ss_dssp -------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----------CCCEEEEC-CSSCE
T ss_pred -------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----------cceeEeec-CCCce
Confidence 001112222233477777765 34566777889999997543211 01111111 12234
Q ss_pred EEEecC---------------CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEe
Q 014534 180 KQAALG---------------FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA 244 (423)
Q Consensus 180 ~~i~~G---------------~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~ 244 (423)
..++.. ....+.-..+|.|..|-..... ....+..........|..++
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-----------------~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------------QTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----------------TEEEEEEEECCCSSCEEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----------------ccceeeeeecCCCCcEEEEE
Confidence 444432 3445556778999998542210 00011111111123566666
Q ss_pred eCC-----ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeee-cCCCCcceEEee--CCeeEEEEcCCCEEEEeCCC
Q 014534 245 AGF-----LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI-SKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 245 ~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v-~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~ 316 (423)
... ...+....+|.|+.|-...... ......... .....|..++.. ..+.+.-..||.|+.|-.+.
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~------~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQG------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSSS------CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCCC------cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 553 3445556789999995433110 000000000 011134444432 23444456889999998764
No 63
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.33 E-value=49 Score=29.69 Aligned_cols=186 Identities=10% Similarity=0.018 Sum_probs=101.5
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC-----CcceEEEEcC
Q 014534 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG-----GAHTLFLTET 89 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g-----~~~~~~lt~~ 89 (423)
++|..+.+..+..+..++..+++|.+|..=..+--..+..... ......++..++.+|+.+... ..+.+++|++
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC
Confidence 3444445555555555555568999888865432111111100 111123444466778877553 4568899999
Q ss_pred CcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEE--cCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCccccc
Q 014534 90 GCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPI 167 (423)
Q Consensus 90 G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~ 167 (423)
|.++-.--.++-.. ...-..-..+.. .+.++.+. .+..+.+++|++|.+..+-.++....|........
T Consensus 124 G~~kr~~l~~~~~~-----r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~--- 194 (312)
T 1suu_A 124 GKIARFESTDFKAV-----KSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCG--- 194 (312)
T ss_dssp SEEEEEEGGGGCC---------CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEEC---
T ss_pred CeEEEEEHHHhhcc-----CCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEe---
Confidence 99998765433110 000001111221 23555544 35677999999999999887765555443332211
Q ss_pred ceEecccCCceeEEEec--CCceEEEEEcCCcEEEEecCCCCccCCCC
Q 014534 168 PTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQ 213 (423)
Q Consensus 168 p~~i~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~~G~n~~gqlg~~~ 213 (423)
+...++..++.+.. ...+.+++|++|.+...-...+-..+++.
T Consensus 195 ---i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~ 239 (312)
T 1suu_A 195 ---MKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGA 239 (312)
T ss_dssp ---CCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTC
T ss_pred ---EEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCC
Confidence 11113445555432 34568888999998888777775555543
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=73.40 E-value=53 Score=29.66 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=86.7
Q ss_pred ceEEEEc-CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC--CceEEEEEcCCcEEE
Q 014534 124 EVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLS 200 (423)
Q Consensus 124 ~i~~i~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~ 200 (423)
.|..++. .....++-..+|.|..|-......+ ........--...|..++.. ....+.-..+|.|..
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~----------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESL----------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeecccccee----------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 5766664 3445556667888888843221100 00000000012245555443 334445567888988
Q ss_pred EecCCCCccCCCCCCcccccccccccccceeeecc--CCccEEEEeeCC---ceeEEEecCCCEEEEecCCCCccCcCCC
Q 014534 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEG 275 (423)
Q Consensus 201 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 275 (423)
|-.... ..+..+ ....|..++... ...+....+|.|..|=......+
T Consensus 166 wd~~~~-----------------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----- 217 (357)
T 4g56_B 166 WDLSQK-----------------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----- 217 (357)
T ss_dssp EETTTT-----------------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB-----
T ss_pred EECCCC-----------------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee-----
Confidence 843211 111111 123466665432 23344567889999832211000
Q ss_pred CCCCCCeeecCCCCcceEEeeC--CeeE-EEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCc-
Q 014534 276 NHARRPSLISKLPYSEEVVCGG--YHTC-VLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWK- 351 (423)
Q Consensus 276 ~~~~~p~~v~~~~~i~~i~~G~--~~~~-~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~- 351 (423)
...........+..++... .+.+ .-..|+.|+.|-...... ...+ ......|..++....
T Consensus 218 ---~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-----------~~~~--~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 218 ---TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-----------AQTS--AVHSQNITGLAYSYHS 281 (357)
T ss_dssp ---CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-----------CEEE--CCCSSCEEEEEECSSS
T ss_pred ---eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-----------eEEE--eccceeEEEEEEcCCC
Confidence 0000000111244555431 2233 346788999997543111 1111 123456777776533
Q ss_pred -eeEE-EE-CCcEEEEec
Q 014534 352 -HTAA-IS-EGKILTWGW 366 (423)
Q Consensus 352 -h~~~-l~-~g~vy~wG~ 366 (423)
..++ -. |+.|+.|=.
T Consensus 282 ~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 282 SPFLASISEDCTVAVLDA 299 (357)
T ss_dssp SCCEEEEETTSCEEEECT
T ss_pred CCEEEEEeCCCEEEEEEC
Confidence 2343 34 899999965
No 65
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.05 E-value=49 Score=29.10 Aligned_cols=206 Identities=16% Similarity=-0.025 Sum_probs=110.8
Q ss_pred ceEEEEc--CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec---CCceEEEEEcCCcE
Q 014534 124 EVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGKV 198 (423)
Q Consensus 124 ~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~~~~~lt~~g~v 198 (423)
.+..+.. ...+.+++|++|++|..-..+..... ... + ..++++|+.+.+ .....+++|++|.+
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~----------~~~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS----------KVS-L-KSREEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE----------ECC-C-SSTTCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc----------ccc-c-CCCCCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 4444443 34568899999999986432211000 000 3 235677888765 23478889999998
Q ss_pred EEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEe--eCCceeEEEecCCCEEEEecCCCCccCcCCCC
Q 014534 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA--AGFLHSACIDENGRVYIFGDRAVDKMLFQEGN 276 (423)
Q Consensus 199 ~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 276 (423)
.-.-..++.+- . . -...+..-+++.+..+. .+....+++|++|++|.+-....-.++....-
T Consensus 93 Kr~~l~~~~~~-~-~--------------G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G 156 (276)
T 3no0_A 93 KKIPLAEFEYK-A-Q--------------GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG 156 (276)
T ss_dssp EEEEGGGTTTC-S-T--------------TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred EEEEHHHhhhh-c-C--------------CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC
Confidence 88765444210 0 0 00111111233444433 34556888999999999865554444332211
Q ss_pred CCCCCeeecCCCCcceEEee--CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEE--ecCCce
Q 014534 277 HARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQV--SCGWKH 352 (423)
Q Consensus 277 ~~~~p~~v~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i--~~G~~h 352 (423)
.. . ..+..-+.|..+... ....+++|++|...-.-..++-..+.+....... ..+..++.+ ..+.+.
T Consensus 157 v~-~-i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-------~~~~~lv~~~~~~~~~~ 227 (276)
T 3no0_A 157 VQ-G-IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-------GTKDTLVDLIPIKEEVE 227 (276)
T ss_dssp EE-C-CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-------CSSSCEEEEEEESSEEE
T ss_pred EE-E-EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-------cCCCcEEEEEEeCCCCE
Confidence 10 0 112222346555443 3467788999988887766554433321111111 122345443 235567
Q ss_pred eEEEE-CCcEEE--Eec
Q 014534 353 TAAIS-EGKILT--WGW 366 (423)
Q Consensus 353 ~~~l~-~g~vy~--wG~ 366 (423)
.++++ +|++.- +-.
T Consensus 228 i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 228 LLITTKNGKAFYDKINQ 244 (276)
T ss_dssp EEEEETTSCEEEEEEEG
T ss_pred EEEEcCCCeEEEeeeCH
Confidence 78888 999887 654
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=72.96 E-value=54 Score=29.59 Aligned_cols=120 Identities=12% Similarity=0.067 Sum_probs=64.2
Q ss_pred CceEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC---------ceeEEEecC
Q 014534 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---------HHSSAITVD 141 (423)
Q Consensus 71 ~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~---------~~~~~lt~~ 141 (423)
..|..|+......+.-..||.|++|-..... ..........+..-...|..++... ...+....+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLD------NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCT------TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcc------cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 4688888777666666789999999754321 1111112233333344677776543 345555678
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceEecccC----CceeEEEecC------Cce-EEEEEcCCcEEEEecC
Q 014534 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS----GIFTKQAALG------FEQ-SVAVTGGGKVLSWGAG 204 (423)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~----~~~i~~i~~G------~~~-~~~lt~~g~v~~~G~n 204 (423)
|.|+.|-...... .. ......+.... ...|..++.. ..+ .+..+.+|.|+.|-..
T Consensus 91 g~i~iw~~~~~~~------~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 91 GDLLFYRITREDE------TK--KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp SCEEEEEEEECTT------TC--CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEccCCcc------cc--cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 9999986432110 00 00012222221 2345555544 344 5555688999999553
No 67
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=72.45 E-value=57 Score=30.35 Aligned_cols=65 Identities=9% Similarity=0.183 Sum_probs=44.5
Q ss_pred eEEEEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCC
Q 014534 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (423)
Q Consensus 73 i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n 150 (423)
|.+|++ ....+++..+|.|..|=.....+ ....+.+...+.++..-....++++.+|.|+.|--.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~------------~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE------------FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC------------EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc------------cCccceeecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 999999 77788888899999996543321 111222334566666655558888999999999543
No 68
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=72.44 E-value=33 Score=26.87 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=62.2
Q ss_pred CCCceEEEEcCC-cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC-CceeEEEecCCcEEE
Q 014534 69 EKHSLKALACGG-AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYM 146 (423)
Q Consensus 69 ~~~~i~~i~~g~-~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G-~~~~~~lt~~G~vy~ 146 (423)
+..+.+++.|-. .+.+-+..||.|=.-..... ...-..+......++.|.+- ....+++..+|+||.
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~-----------~~s~lei~sv~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD-----------THIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTC-----------GGGCEEEEEEETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCC-----------CceEEEEEEccCCEEEEEEecCCEEEeECCCCCEee
Confidence 345688898865 67777889999886543211 11111121122257777753 577889999999997
Q ss_pred EeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEE
Q 014534 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200 (423)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~ 200 (423)
--.. ..+..-........-...|+.+..|. -+++..+|++|.
T Consensus 97 s~~~----------t~ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRDR----------SDTHIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp ECCT----------TCGGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred cccC----------CCCceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 4221 11111111112222334455555554 889999999996
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=72.39 E-value=57 Score=29.61 Aligned_cols=239 Identities=9% Similarity=-0.015 Sum_probs=110.7
Q ss_pred CceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC---CceeEEEecCCcEE
Q 014534 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELY 145 (423)
Q Consensus 71 ~~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G---~~~~~~lt~~G~vy 145 (423)
..|..++...+ ..+.-..||.|.+|-..... ........+......|..++.. ....+.-..+|.|+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN--------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT--------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccccc--------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 35777766433 33344568999999643210 0001112222233466666653 44555566789999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEec--ccCCceeEEEecCC---ceEEEEEcCCcEEEEecCCCCccCCCCCCccccc
Q 014534 146 MWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (423)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~--~~~~~~i~~i~~G~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~ 220 (423)
.|-......... ...+..+. ......|..++... ...+.-..+|.|..|-......
T Consensus 140 iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------------ 200 (416)
T 2pm9_A 140 IWDMNKCTESPS-------NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE------------ 200 (416)
T ss_dssp BCBTTTTSSCTT-------TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE------------
T ss_pred EEECCCCccccc-------cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc------------
Confidence 996543220000 00011110 00122344444432 3344446788899985432100
Q ss_pred ccccccccceeeeccC-----CccEEEEeeCCc---eeEEEecCC---CEEEEecCCCCccCcCCCCCCCCCeeec--CC
Q 014534 221 LRSTSEYTPRLIKELE-----GVKVKIAAAGFL---HSACIDENG---RVYIFGDRAVDKMLFQEGNHARRPSLIS--KL 287 (423)
Q Consensus 221 ~~~~~~~~p~~i~~~~-----~~~i~~i~~g~~---~~~~lt~~g---~v~~~G~n~~gqlg~~~~~~~~~p~~v~--~~ 287 (423)
...+.... ...|..++.... ..+.-..++ .|+.|-.....+ ....+. ..
T Consensus 201 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~----------~~~~~~~~~~ 262 (416)
T 2pm9_A 201 --------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT----------PLQTLNQGHQ 262 (416)
T ss_dssp --------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS----------CSBCCCSCCS
T ss_pred --------ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC----------CcEEeecCcc
Confidence 00011000 234555555432 333345555 777775433110 001111 11
Q ss_pred CCcceEEe---eCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCce--eEEEE--CCc
Q 014534 288 PYSEEVVC---GGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH--TAAIS--EGK 360 (423)
Q Consensus 288 ~~i~~i~~---G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h--~~~l~--~g~ 360 (423)
..|..++. .....+....||.|+.|-......+ ..+. .....|..++...+. .++.. ||.
T Consensus 263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----------~~~~--~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----------SQFP--ARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE-----------EEEE--CSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----------eeec--CCCCceEEEEECCCCCCEEEEEecCCc
Confidence 24556654 3345566678899999975432111 1111 122345555555443 33333 899
Q ss_pred EEEEecC
Q 014534 361 ILTWGWG 367 (423)
Q Consensus 361 vy~wG~~ 367 (423)
|..|-..
T Consensus 330 i~iw~~~ 336 (416)
T 2pm9_A 330 IEVQTLQ 336 (416)
T ss_dssp EEEEESC
T ss_pred EEEEEcc
Confidence 9999863
No 70
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=72.16 E-value=62 Score=29.99 Aligned_cols=248 Identities=9% Similarity=0.032 Sum_probs=113.6
Q ss_pred eeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccc-eeeCccCCCceEEEEcCCc---ceEEEEcCCcEEEEecCCCCcc
Q 014534 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP-VVCSAFEKHSLKALACGGA---HTLFLTETGCVYATGLNDFGQL 103 (423)
Q Consensus 28 ~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p-~~~~~~~~~~i~~i~~g~~---~~~~lt~~G~v~~wG~n~~gql 103 (423)
..++.+.+.++.|++|-.......... .....| ..+.. ....|..++.... ..+.-..+|.|.+|-.+.....
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~--~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEP--SGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCT--TCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred CcEEEEECCCCcEEEEECCCcccccCc--cccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 345666667888888876542111100 000111 11111 1224555554322 4444456888999976542110
Q ss_pred cCCCCCCcccc-ceEeccCCCceEEEEcC---CceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCcee
Q 014534 104 GISENIGYSLE-PLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (423)
Q Consensus 104 g~~~~~~~~~~-p~~~~~l~~~i~~i~~G---~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i 179 (423)
..... ...+..-...|..|+.. ....+....+|.|+.|-...... ..+..........|
T Consensus 218 ------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 218 ------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-----------SKPSHTVDAHTAEV 280 (430)
T ss_dssp ------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-----------SSCSEEEECCSSCE
T ss_pred ------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-----------CcceeEeecCCCCe
Confidence 01111 12222233467777763 34455666799999997653210 01111111122345
Q ss_pred EEEecCC--c-eEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCc---eeEEE
Q 014534 180 KQAALGF--E-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACI 253 (423)
Q Consensus 180 ~~i~~G~--~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~l 253 (423)
..++... . ..+.-..+|.|..|-.....+ |..........|..++.... ..+.-
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKL--------------------KLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------------CSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 5555432 2 344456788999996532111 11111111235666655432 23444
Q ss_pred ecCCCEEEEecCCCCccCcCCCCCCCCCeeecCC----CCcceEEeeCC---eeEEEEcCCCEEEEeCC
Q 014534 254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL----PYSEEVVCGGY---HTCVLTSGGELYTWGSN 315 (423)
Q Consensus 254 t~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~----~~i~~i~~G~~---~~~~lt~~g~vy~wG~n 315 (423)
..+|.|..|-....+............|..+... ..|..++.... ..+....||.|..|-..
T Consensus 341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 6788899985443221100000000011222211 13666654433 34456678888888754
No 71
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=71.59 E-value=58 Score=29.37 Aligned_cols=185 Identities=11% Similarity=0.033 Sum_probs=90.3
Q ss_pred CceEEEEcCC--ceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec---CCceEEEEEcCCc
Q 014534 123 KEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGK 197 (423)
Q Consensus 123 ~~i~~i~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~~~~~lt~~g~ 197 (423)
..|..++... ...+.-..+|.|..|-.... .....+.. ....|..|+. +....+.-..+|.
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-------------~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-------------AVLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTT-------------EEEEEECC-CSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------cEEEEEcC-CCCCEEEEEEccCCCceeeeeccCCc
Confidence 3677776543 34444567899999854321 00111111 1234555554 2334555677899
Q ss_pred EEEEecCCCCccCCCCCCcccccccccccccceeee-ccCCccEEEEeeC---CceeEEEecCCCEEEEecCCCCccCcC
Q 014534 198 VLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK-ELEGVKVKIAAAG---FLHSACIDENGRVYIFGDRAVDKMLFQ 273 (423)
Q Consensus 198 v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~n~~gqlg~~ 273 (423)
|..|-......+ ..+. ......+..++.. ....+.-..++.|+.|-....
T Consensus 206 v~~wd~~~~~~~--------------------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------ 259 (357)
T 4g56_B 206 ILLWDTRKPKPA--------------------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------ 259 (357)
T ss_dssp EEECCTTSSSCB--------------------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------
T ss_pred eEEEECCCCcee--------------------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC------
Confidence 999843211000 0000 0111235555543 222233367888999843221
Q ss_pred CCCCCCCCeeecCC-CCcceEEee---CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecC
Q 014534 274 EGNHARRPSLISKL-PYSEEVVCG---GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCG 349 (423)
Q Consensus 274 ~~~~~~~p~~v~~~-~~i~~i~~G---~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G 349 (423)
.....+... ..|..++.. ....+.-..||.|+.|-... +++ +...-....|..++..
T Consensus 260 -----~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~-------------~~~~~H~~~V~~vafs 320 (357)
T 4g56_B 260 -----DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEV-------------FRDLSHRDFVTGVAWS 320 (357)
T ss_dssp -----GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEE-------------EEECCCSSCEEEEEEC
T ss_pred -----cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcE-------------eEECCCCCCEEEEEEe
Confidence 111122222 246666543 22334456889999996432 111 1111123467888765
Q ss_pred C-ce-eEEE-E-CCcEEEEec
Q 014534 350 W-KH-TAAI-S-EGKILTWGW 366 (423)
Q Consensus 350 ~-~h-~~~l-~-~g~vy~wG~ 366 (423)
. +. .++- . ||+|+.|=.
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEEC
T ss_pred CCCCCEEEEEcCCCeEEEEEC
Confidence 2 33 3333 3 999999965
No 72
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=71.45 E-value=57 Score=29.22 Aligned_cols=227 Identities=9% Similarity=0.030 Sum_probs=114.9
Q ss_pred CCCceEE--EEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC-----CceeEEEecC
Q 014534 69 EKHSLKA--LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVD 141 (423)
Q Consensus 69 ~~~~i~~--i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G-----~~~~~~lt~~ 141 (423)
++..+.. ++.+.+..+++|+.|++|..-...-...+..........-..+. -.+.|+.+... ..+.+++|++
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCC
Confidence 3444554 34567789999999999988654322222111111111111122 23467776553 4568899999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEe--cCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccc
Q 014534 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (423)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~--~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 219 (423)
|.++..-..++-... ... .+ .+..-++..++.+. .+..+.+++|++|.+..+-..+.-..|+.....
T Consensus 124 G~~kr~~l~~~~~~r----~~G---~~-~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv--- 192 (312)
T 1suu_A 124 GKIARFESTDFKAVK----SRG---VI-VIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV--- 192 (312)
T ss_dssp SEEEEEEGGGGCC--------C---EE-CBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE---
T ss_pred CeEEEEEHHHhhccC----CCc---EE-EEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe---
Confidence 999988765442110 000 00 01111233444443 356688999999999998776654444432210
Q ss_pred cccccccccceeeeccCCccEEEEee--CCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeee-cCCCCcceE--E
Q 014534 220 FLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI-SKLPYSEEV--V 294 (423)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v-~~~~~i~~i--~ 294 (423)
+.+...++..++.+.. .....++++++|.+...-...+-..+.+..-. ...... .....+..+ .
T Consensus 193 ----------~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv-~~~~~~k~~~~~lv~~~~~ 261 (312)
T 1suu_A 193 ----------CGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY-TSYKKSDKKAGSVVDAIAV 261 (312)
T ss_dssp ----------ECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE-ECSCTTCTTTCSEEEEEEE
T ss_pred ----------EeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE-EeeEccCCCCCeEEEEEEe
Confidence 0111112334554432 33457778899988777665554444332111 111111 011123222 2
Q ss_pred eeCCeeEEEEcCCCEEEEeCCCCC
Q 014534 295 CGGYHTCVLTSGGELYTWGSNENG 318 (423)
Q Consensus 295 ~G~~~~~~lt~~g~vy~wG~n~~g 318 (423)
......++++++|++.-.-.++..
T Consensus 262 ~~~~~l~~~t~~g~~~r~~~~~i~ 285 (312)
T 1suu_A 262 SEDDEILLVSKRSKALRTVAGKVS 285 (312)
T ss_dssp CTTCEEEEEETTCEEEEEEGGGSC
T ss_pred CCCCEEEEEeCCCeEEEEEcccCC
Confidence 244566778888877766555543
No 73
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=70.43 E-value=69 Score=29.76 Aligned_cols=75 Identities=9% Similarity=-0.008 Sum_probs=47.1
Q ss_pred ccceEeccCCCceEEEEcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEE
Q 014534 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192 (423)
Q Consensus 113 ~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l 192 (423)
..|.....++. |.+|+. ....+++.++|.|..|-..+..+. .....+ ...+.++.+-....+++
T Consensus 79 ~~~~~~~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-------------~~~~~~-~~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-------------RTVTSF-EKPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT-EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-------------EEEEEC-SSCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-------------Ccccee-ecceeeEEecCCCEEEE
Confidence 45533323676 999999 777778889999999875443211 011111 12345555555457778
Q ss_pred EcCCcEEEEec
Q 014534 193 TGGGKVLSWGA 203 (423)
Q Consensus 193 t~~g~v~~~G~ 203 (423)
+.+|.|+.|-.
T Consensus 143 ~~dG~L~v~dl 153 (388)
T 1xip_A 143 NSVNDLSALDL 153 (388)
T ss_dssp ETTSEEEEEET
T ss_pred ECCCCEEEEEc
Confidence 99999999943
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=70.09 E-value=65 Score=29.35 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=58.7
Q ss_pred EEcCCcceEEE---EcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC---CceeEEEecCCcEEEEeC
Q 014534 76 LACGGAHTLFL---TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGK 149 (423)
Q Consensus 76 i~~g~~~~~~l---t~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G---~~~~~~lt~~G~vy~~G~ 149 (423)
+++...+..++ ..+|.|++|-....+.+. .....+..-...|..++.. ....+.-..||.|..|-.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 55555555554 447899999765433321 0011122223467777763 345555667899999976
Q ss_pred CCCCCCCCCCCCCcccccceEecccCCceeEEEecCC---ceEEEEEcCCcEEEEec
Q 014534 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF---EQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~~~~~lt~~g~v~~~G~ 203 (423)
........ ...+..........|..++... ...+.-..+|.|+.|-.
T Consensus 112 ~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 112 PDGGLVLP-------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp CTTCCSSC-------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred cCCCCccc-------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 54321110 0111111111223466665543 34555577899999954
No 75
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=69.27 E-value=66 Score=29.09 Aligned_cols=234 Identities=9% Similarity=0.027 Sum_probs=109.3
Q ss_pred ceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEE
Q 014534 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (423)
Q Consensus 72 ~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (423)
.|..++...+ ..+.-..+|.|.+|-. .++ ....+......|..++.. ....+....+|.|+.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK--TGA-----------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TSC-----------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCC-----------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 5777766533 4445567888999952 111 112222233467777653 3445666778999999
Q ss_pred eCCCCCCCCCCCCCCcccccceEec----ccCCceeEEEec-CCceEEEEEcCCcEEEEecCCCCccCCCCCCccccccc
Q 014534 148 GKNSNGQLGLGKKAAKVIPIPTKVE----CLSGIFTKQAAL-GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (423)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~----~~~~~~i~~i~~-G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~ 222 (423)
-......+..-.... ..+..+. ......+..++. .....++.+.+|.|+.|-......
T Consensus 177 d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-------------- 239 (425)
T 1r5m_A 177 NVISGTVMQHFELKE---TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-------------- 239 (425)
T ss_dssp ETTTTEEEEEECCC------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC--------------
T ss_pred ECCCCcEEEEeeccc---cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce--------------
Confidence 754321110000000 0000000 000000222221 123455566788888885432100
Q ss_pred ccccccceeeeccCCccEEEEeeC--CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeCC-
Q 014534 223 STSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY- 298 (423)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~~- 298 (423)
...+. .....|..++.. ....+....+|.|+.|-.... .....+.. ...|..++....
T Consensus 240 ------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 240 ------TGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQNCFYGHSQSIVSASWVGDD 301 (425)
T ss_dssp ------SEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSEEECCCSSCEEEEEEETTT
T ss_pred ------eeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccceEecCCCccEEEEEECCCC
Confidence 00011 111234444432 334444567888998843221 11122221 224555554433
Q ss_pred eeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCce--eEEEE-CCcEEEEec
Q 014534 299 HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH--TAAIS-EGKILTWGW 366 (423)
Q Consensus 299 ~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h--~~~l~-~g~vy~wG~ 366 (423)
..++...+|.|+.|-...... ...+. .....|..++...+. .++-. ||.|+.|-.
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~~-----------~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNTL-----------LALSI--VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EEEEEETTSEEEEEETTTTEE-----------EEEEE--CTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCcE-----------eEecc--cCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 555567889999998643111 11111 123467776665333 33334 899999976
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=67.77 E-value=1.1e+02 Score=30.97 Aligned_cols=221 Identities=11% Similarity=0.045 Sum_probs=107.1
Q ss_pred eeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC--CcceEEEEcCCcEEEEecCCCCcccC
Q 014534 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGI 105 (423)
Q Consensus 28 ~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~gqlg~ 105 (423)
..++.+...+|.|.+|-... | .....+.. ....|..++.. ....+.-..+|.|.+|-.....
T Consensus 25 ~~~la~~~~~g~v~iwd~~~-~----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---- 88 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYET-Q----------VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---- 88 (814)
T ss_dssp SSEEEEEETTSEEEEEETTT-T----------EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC----
T ss_pred CCEEEEEeCCCEEEEEECCC-C----------ceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----
Confidence 34444555777888885322 1 11122221 22346665543 3445556678999999653211
Q ss_pred CCCCCccccceEeccCCCceEEEEcCCc--eeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEe
Q 014534 106 SENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (423)
Q Consensus 106 ~~~~~~~~~p~~~~~l~~~i~~i~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (423)
....+......|..++.... ..+.-..+|.|..|-..... .....+. .....|..++
T Consensus 89 --------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~-~~~~~v~~~~ 147 (814)
T 3mkq_A 89 --------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFE-GHEHFVMCVA 147 (814)
T ss_dssp --------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEE-CCSSCEEEEE
T ss_pred --------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEc-CCCCcEEEEE
Confidence 11222223346777665433 45555678899988643110 1111111 1223455555
Q ss_pred cC---CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEE--ee--CCceeEEEecC
Q 014534 184 LG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA--AA--GFLHSACIDEN 256 (423)
Q Consensus 184 ~G---~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i--~~--g~~~~~~lt~~ 256 (423)
.. ....+.-+.+|.|..|-..... ....+.......+..+ .. .....+....+
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQST--------------------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSS--------------------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCc--------------------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 43 2345555678999999542110 0011111111122223 22 33445555678
Q ss_pred CCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeCC--eeEEEEcCCCEEEEeCCC
Q 014534 257 GRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY--HTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 257 g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~ 316 (423)
|.|..|-.... .....+.. ...|..++.... ..+....||.|+.|-...
T Consensus 208 g~i~~~d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 208 LTIKIWDYQTK-----------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp SEEEEEETTTT-----------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEEECCCC-----------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 88999843221 01111221 224555554333 345556789999997654
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=65.98 E-value=82 Score=28.94 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=38.8
Q ss_pred CceEEEEcCC-c--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC--ceeEEEecCCcEE
Q 014534 71 HSLKALACGG-A--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELY 145 (423)
Q Consensus 71 ~~i~~i~~g~-~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~--~~~~~lt~~G~vy 145 (423)
..|..|+... + ..+.-..||.|.+|-.... .......+.........|..++... ...+.-..+|.|.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEI-------IVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHH-------HTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECccc-------ccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 4677777655 3 3333456888888864210 0000111121111344777777643 4456667789999
Q ss_pred EEeC
Q 014534 146 MWGK 149 (423)
Q Consensus 146 ~~G~ 149 (423)
.|-.
T Consensus 137 vwd~ 140 (437)
T 3gre_A 137 VLKV 140 (437)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8854
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=65.38 E-value=74 Score=28.21 Aligned_cols=243 Identities=6% Similarity=-0.136 Sum_probs=109.4
Q ss_pred eeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC--CcceEEEEcCCcEEEEecCCCCcccC
Q 014534 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGI 105 (423)
Q Consensus 28 ~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~gqlg~ 105 (423)
..++.+...++.|++|-.... .......+.. ....|..++.. ....+.-..||.|.+|-....
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~~---------~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----- 84 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSGN---------KWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR----- 84 (372)
T ss_dssp SSEEEEECSSSEEEEEEEETT---------EEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-----
T ss_pred CCEEEEEeCCCEEEEEeCCCC---------cEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-----
Confidence 344555557888888853321 0001122221 22356666654 334444567888888854211
Q ss_pred CCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEe
Q 014534 106 SENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (423)
Q Consensus 106 ~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (423)
.......+......|..++.. ....+.-..+|.|+.|-...... ......+.......|..++
T Consensus 85 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 85 -----TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND----------WWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp -----EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----------EEEEEEECTTCCSCEEEEE
T ss_pred -----eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc----------ceeeeeeecccCCCeeEEE
Confidence 001111112233466666653 34455566788888885432110 0011111111123455555
Q ss_pred cC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeecc--CCccEEEEeeCC--ceeEEEecCC
Q 014534 184 LG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGF--LHSACIDENG 257 (423)
Q Consensus 184 ~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~--~~~~~lt~~g 257 (423)
.. ....+.-+.+|.|+.|-...... ......... .........+..+ ....|..++... ...+....+|
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 224 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEV-EERPAPTPW----GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 224 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTT-SCCCCCBTT----BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccc-ccccccccc----ccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC
Confidence 43 34555557789999996432110 000000000 0000011111111 123455555533 3445556788
Q ss_pred CEEEEecCCCCccCcCCCCCCCCCeeecCC-CCcceEEee-CCeeEEEEcCCCEEEEeCCC
Q 014534 258 RVYIFGDRAVDKMLFQEGNHARRPSLISKL-PYSEEVVCG-GYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 258 ~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~-~~i~~i~~G-~~~~~~lt~~g~vy~wG~n~ 316 (423)
.|..|-...... ...+... ..|..++.. ....++...+|.++.|-...
T Consensus 225 ~i~i~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 225 TVCLADADKKMA-----------VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEEGGGTTE-----------EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEEEECCCCce-----------eEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 888885432110 1111111 134444433 33455556788888887544
No 79
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=62.61 E-value=96 Score=28.57 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=72.5
Q ss_pred hhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccc--eeeCccCCCceEEEEcC-----CcceEEEEc
Q 014534 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACG-----GAHTLFLTE 88 (423)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p--~~~~~~~~~~i~~i~~g-----~~~~~~lt~ 88 (423)
+|..+.+.....+..++.-++.|++|-.=..+--..|. ...-.| ..++..++.+|+.+..- ..+.+++|+
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r---~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~ 121 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS---NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATR 121 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEET
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc---ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeC
Confidence 34444444455555455556899999886544222222 111122 22333466788887653 346788999
Q ss_pred CCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEE--EEcCCceeEEEecCCcEEEEeCCCCCCCCCC
Q 014534 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQLGLG 158 (423)
Q Consensus 89 ~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~--i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~ 158 (423)
+|.+.-.--..+.... ..-..-..+.. .+.++. +..+....+++|++|++..+-.+....+|..
T Consensus 122 ~G~vKrt~l~e~~~~~-----~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~ 187 (370)
T 3l6v_A 122 NGTVKKTPLSEFAFRL-----ARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRT 187 (370)
T ss_dssp TSEEEEEEGGGGCSCC-----TTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred CCeEEEeEHHHhhccc-----CCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCC
Confidence 9988776543332110 00000111111 123333 3346778999999999998876665555544
No 80
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=62.34 E-value=86 Score=27.94 Aligned_cols=227 Identities=14% Similarity=0.040 Sum_probs=112.5
Q ss_pred CCCceEE--EEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEc-----CCceeEEEecC
Q 014534 69 EKHSLKA--LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-----GYHHSSAITVD 141 (423)
Q Consensus 69 ~~~~i~~--i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~-----G~~~~~~lt~~ 141 (423)
++..+.. ++...++.++.|+.|++|..-..+-...+..........-..+. -.+.|+.+.. .....+++|++
T Consensus 40 e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~ 118 (307)
T 1zi0_A 40 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATAN 118 (307)
T ss_dssp --CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 3344544 45567889999999999998765433222211111111111111 2346776644 23457888999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceE-ecccCCceeEE--EecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccc
Q 014534 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSIL 218 (423)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~--i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 218 (423)
|.+--.-..++-.... .... +...++..++. ...+..+.+++|++|+++.+-..+--.+|+.....
T Consensus 119 G~~Krt~l~e~~~~~r---------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv-- 187 (307)
T 1zi0_A 119 GTVKKTVLTEFNRLRT---------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV-- 187 (307)
T ss_dssp SEEEEEEGGGGTTCCT---------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE--
T ss_pred CeEEEEEHHHhhcccc---------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe--
Confidence 9887765433321110 0001 11112233433 23466789999999999998766554444422110
Q ss_pred ccccccccccceeeeccCCccEEEEeeC--CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCCCcceEEe-
Q 014534 219 GFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC- 295 (423)
Q Consensus 219 ~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~- 295 (423)
+.+...++..|+.+..- ....+.+|++|.+--.-...+-..+.+.. -...+........++.+..
T Consensus 188 -----------~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-G~~~~~~~~~~~~lv~~~~v 255 (307)
T 1zi0_A 188 -----------RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-GVISIKVTERNGLVVGAVQV 255 (307)
T ss_dssp -----------ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-CEESSCCCTTTCSEEEEEEE
T ss_pred -----------EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-CEEeeEecCCCCeEEEEEEe
Confidence 11222234456655432 23456677777655543322221111110 0111111112233444333
Q ss_pred -eCCeeEEEEcCCCEEEEeCCCCCC
Q 014534 296 -GGYHTCVLTSGGELYTWGSNENGC 319 (423)
Q Consensus 296 -G~~~~~~lt~~g~vy~wG~n~~gq 319 (423)
.....+++|++|++.-+-.++-..
T Consensus 256 ~~~~~l~~~t~~g~~ir~~~~~i~~ 280 (307)
T 1zi0_A 256 DDCDQIMMITDAGTLVRTRVSEISI 280 (307)
T ss_dssp CTTCEEEEEESSCCEEEEEGGGSCB
T ss_pred CCCceEEEEcCCCcEEEEecccccc
Confidence 445678899999998877665433
No 81
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=61.81 E-value=98 Score=28.40 Aligned_cols=154 Identities=8% Similarity=0.040 Sum_probs=69.8
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCC--cceEEEEcCCcEEEEecC--CCCccc
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLN--DFGQLG 104 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~--~~~~~lt~~G~v~~wG~n--~~gqlg 104 (423)
.++.+...|+.|.+|-..... .+ ....+..... ....|..|+... ...+.-..||.|.+|-.. ..+++-
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~-~~-----~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 149 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEII-VG-----EVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHH-TT-----CCCSCSEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred CEEEEecCCceEEEeECcccc-cC-----cccceeeecc-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee
Confidence 455666677777777533200 00 0011111101 234577777644 344555678999998542 111110
Q ss_pred CCCCCCccccceEecc--CCCceEEEEc----CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEeccc-CCc
Q 014534 105 ISENIGYSLEPLRISG--LKKEVVQIST----GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL-SGI 177 (423)
Q Consensus 105 ~~~~~~~~~~p~~~~~--l~~~i~~i~~----G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~-~~~ 177 (423)
.... ........+.. ....+..+.. .....+.-+.+|.|+.|-..... ....+... ...
T Consensus 150 ~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------~~~~~~~~~h~~ 215 (437)
T 3gre_A 150 KFLN-CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-------------RLQIIENSPRHG 215 (437)
T ss_dssp EEEE-EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-------------EEEEEECCGGGC
T ss_pred eccc-cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-------------eeEEEccCCCCC
Confidence 0000 00000000000 1224444442 24456666778999999653210 01111110 123
Q ss_pred eeEEEecC--CceEEEEEcCCcEEEEec
Q 014534 178 FTKQAALG--FEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 178 ~i~~i~~G--~~~~~~lt~~g~v~~~G~ 203 (423)
.|..++.. ....+.-+.+|.|..|-.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 46555543 344555678888999954
No 82
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=60.36 E-value=1.2e+02 Score=28.99 Aligned_cols=217 Identities=15% Similarity=0.165 Sum_probs=101.3
Q ss_pred ceEEEEcC--CcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEE
Q 014534 72 SLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (423)
Q Consensus 72 ~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (423)
.|..++.. ..+.+.-..+|.|.+|-.+ ++ ....+......|..++.. ....+.-..++.|+.|
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~-----------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQ-----------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT--CC-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCC--CC-----------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence 46555543 3344445667888887532 11 111222233467776653 3344555678889888
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccc
Q 014534 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (423)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (423)
-.+ ++ ....+.. ....|..++.. ....+.-..++.|..|-.+ ++
T Consensus 413 ~~~--~~------------~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~----------------- 458 (577)
T 2ymu_A 413 NRN--GQ------------LLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQ----------------- 458 (577)
T ss_dssp CTT--CC------------EEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SC-----------------
T ss_pred eCC--CC------------EEEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CC-----------------
Confidence 432 11 0011111 12235444432 3344445678888888421 00
Q ss_pred cccceeeeccCCccEEEEeeCCce--eEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeC--Cee
Q 014534 226 EYTPRLIKELEGVKVKIAAAGFLH--SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGG--YHT 300 (423)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~~~--~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~--~~~ 300 (423)
....+.. ....|..++..... .+.-..++.|..|-.. +++ ...+.. ...|..++... .+.
T Consensus 459 --~~~~~~~-~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 --LLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp --EEEEEEC-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEEECCSSCEEEEEECTTSSCE
T ss_pred --EEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEEeCCCCCEEEEEEcCCCCEE
Confidence 0001111 11245555544332 2333567888888532 111 111221 22466665432 234
Q ss_pred EEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCcee-EE-EE-CCcEEEE
Q 014534 301 CVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AA-IS-EGKILTW 364 (423)
Q Consensus 301 ~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~-~~-l~-~g~vy~w 364 (423)
+.-..||.|+.|-.. +++ ...+. -....|..++...+-. ++ -. |+.|..|
T Consensus 524 ~s~~~dg~v~lwd~~--~~~----------~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 524 ASASDDKTVKLWNRN--GQL----------LQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEETTSEEEEECTT--SCE----------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEECcCEEEEEeCC--CCE----------EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 445678899999532 111 11111 1234666665543322 22 23 7888887
No 83
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=60.34 E-value=93 Score=27.70 Aligned_cols=224 Identities=13% Similarity=0.066 Sum_probs=116.1
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccc--eeeCccCCCceEEEEc-----CCcceEEEE
Q 014534 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALAC-----GGAHTLFLT 87 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p--~~~~~~~~~~i~~i~~-----g~~~~~~lt 87 (423)
++|..+.+..+..+..++.-++.|++|-.=..+--..+. ...-.| ..++..++++|+.+.. ...+.+++|
T Consensus 40 e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T 116 (307)
T 1zi0_A 40 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 116 (307)
T ss_dssp --CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEe
Confidence 445545555566555566666999999887654222221 122233 2334446677887754 233577889
Q ss_pred cCCcEEEEecCCCCcccCCCCCCccccceEeccCC--CceEEE--EcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCc
Q 014534 88 ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQI--STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK 163 (423)
Q Consensus 88 ~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~--~~i~~i--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~ 163 (423)
++|.+.-.-..++-... ......-.+. +.++.+ ..+..+.+++|++|+++.+-..+...+|......
T Consensus 117 ~~G~~Krt~l~e~~~~~--------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv- 187 (307)
T 1zi0_A 117 ANGTVKKTVLTEFNRLR--------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV- 187 (307)
T ss_dssp TTSEEEEEEGGGGTTCC--------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE-
T ss_pred CCCeEEEEEHHHhhccc--------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe-
Confidence 99988766433221100 0111111121 244443 3467789999999999999877665555432221
Q ss_pred ccccceEecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEE
Q 014534 164 VIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVK 241 (423)
Q Consensus 164 ~~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~ 241 (423)
..+..-++..|+.+..- ....+++|+.|.+--.-...+-.-+++... ...+. +.. ....++
T Consensus 188 -----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG----------~~~~~-~~~-~~~~lv 250 (307)
T 1zi0_A 188 -----RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG----------VISIK-VTE-RNGLVV 250 (307)
T ss_dssp -----ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC----------EESSC-CCT-TTCSEE
T ss_pred -----EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC----------EEeeE-ecC-CCCeEE
Confidence 11222245567766532 335677788887655544333222222110 00111 110 112344
Q ss_pred EEee--CCceeEEEecCCCEEEEecCCC
Q 014534 242 IAAA--GFLHSACIDENGRVYIFGDRAV 267 (423)
Q Consensus 242 ~i~~--g~~~~~~lt~~g~v~~~G~n~~ 267 (423)
.+.. .....+++|++|.+..+-.+..
T Consensus 251 ~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 251 GAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp EEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred EEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 3322 4566788999999887755443
No 84
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.41 E-value=1.1e+02 Score=28.06 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=73.2
Q ss_pred CCCceEEE--EcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC-----CceeEEEecC
Q 014534 69 EKHSLKAL--ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVD 141 (423)
Q Consensus 69 ~~~~i~~i--~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G-----~~~~~~lt~~ 141 (423)
++..+..+ +.+.++.+++|+.|++|..-...-...+..........-..+. -.++|+.+..- ..+.+++|++
T Consensus 44 e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 122 (370)
T 3l6v_A 44 EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRN 122 (370)
T ss_dssp CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 34445443 4466678889999999988654332222211111111111111 23477777653 3468899999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEE--EecCCceEEEEEcCCcEEEEecCCCCccCCC
Q 014534 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (423)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~--i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~ 212 (423)
|.+.-.-...+.... ... . .-..+. ++..++. +..+..+.+++|++|++..+-...--.+|+.
T Consensus 123 G~vKrt~l~e~~~~~--~~G--~--~ai~L~--~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~ 187 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRL--ARG--K--IAINLD--EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRT 187 (370)
T ss_dssp SEEEEEEGGGGCSCC--TTC--E--ESSCCC--TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred CeEEEeEHHHhhccc--CCc--e--EEEEeC--CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCC
Confidence 988877654443211 000 0 000111 1223333 3346678999999999998876655555554
No 85
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=58.27 E-value=1.1e+02 Score=27.82 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=34.4
Q ss_pred ceEEEEcCC--ceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCC--ceEEEEEcCCcEE
Q 014534 124 EVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVL 199 (423)
Q Consensus 124 ~i~~i~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~~~~lt~~g~v~ 199 (423)
.|..++... ...+.-..+|.|..|-.................. ...+.. -...|..++... .+.+.-..++.|+
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC-EVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVL 335 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE-EEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc-eEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 576766543 3455556789999997543221110000000000 000111 112355555433 3445556788999
Q ss_pred EEec
Q 014534 200 SWGA 203 (423)
Q Consensus 200 ~~G~ 203 (423)
.|-.
T Consensus 336 iwd~ 339 (393)
T 1erj_A 336 FWDK 339 (393)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9953
No 86
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=57.53 E-value=1e+02 Score=27.14 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=11.9
Q ss_pred ceEEEEEcCCcEEEEec
Q 014534 187 EQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 187 ~~~~~lt~~g~v~~~G~ 203 (423)
.|++++ .+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466665 5789999985
No 87
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=56.62 E-value=1.1e+02 Score=27.45 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=114.1
Q ss_pred CCCceEE--EEcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC-----CceeEEEecC
Q 014534 69 EKHSLKA--LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVD 141 (423)
Q Consensus 69 ~~~~i~~--i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G-----~~~~~~lt~~ 141 (423)
++..+.. ++...+..+++|+.|++|..-...-...+......+...-..+. -.+.|+.+..- ....+++|++
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 115 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRN 115 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCC
Confidence 3334444 45578889999999999998765433222211111111111111 12367765432 2357889999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceE-ecccCCceeEE--EecCCceEEEEEcCCcEEEEecCCCCccCCCCCCccc
Q 014534 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSIL 218 (423)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~--i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 218 (423)
|.+.-.-..++-.... . .... +...++..++. +..+..+.+++|++|+++.+-.++--.+|+.....
T Consensus 116 G~iKrt~l~e~~~~~r---~-----~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV-- 185 (323)
T 1wp5_A 116 GMVKKTELKHYKAQRY---S-----KPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV-- 185 (323)
T ss_dssp SEEEEEEGGGGCCSCC---S-----SCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE--
T ss_pred CeEEEeEHHHhhhccc---c-----CceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE--
Confidence 9888766544322110 0 0000 11112233333 33467789999999999999876554444422110
Q ss_pred ccccccccccceeeeccCCccEEEEee--CCc-eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC-CcceE-
Q 014534 219 GFLRSTSEYTPRLIKELEGVKVKIAAA--GFL-HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEV- 293 (423)
Q Consensus 219 ~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~-~i~~i- 293 (423)
+.+...++..|+.+.. ... ..+.++++|.....-...+-..+.+. .-...+...+... .+..+
T Consensus 186 -----------~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~-kGv~~~~~~~~~~~~l~~~~ 253 (323)
T 1wp5_A 186 -----------KGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK-RGVVILRELKANPHRISGFV 253 (323)
T ss_dssp -----------ECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS-CCEECSCCCSSSCCCEEEEE
T ss_pred -----------EEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC-CCEECeeecCCCCceEEEEE
Confidence 0111112334554422 122 46666777765444333322221111 1111122121111 23322
Q ss_pred -EeeCCeeEEEEcCCCEEEEeCCCCCCCCC
Q 014534 294 -VCGGYHTCVLTSGGELYTWGSNENGCLGI 322 (423)
Q Consensus 294 -~~G~~~~~~lt~~g~vy~wG~n~~gqlG~ 322 (423)
..+.+..++++++|++.-.-.++-...|.
T Consensus 254 ~v~~~~~i~~it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 254 VAQDSDTIYLQTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp EECTTCEEEEEETTSCEEEEEGGGSCBCCS
T ss_pred EeCCCCeEEEEeCCCeEEEEEhhhcCccCc
Confidence 23456788899999998877666544443
No 88
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=56.41 E-value=1e+02 Score=26.98 Aligned_cols=149 Identities=10% Similarity=-0.005 Sum_probs=81.1
Q ss_pred CceEEEEcCCc-----eeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CCceEEEEEcC
Q 014534 123 KEVVQISTGYH-----HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGG 195 (423)
Q Consensus 123 ~~i~~i~~G~~-----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~lt~~ 195 (423)
..|..++.... ..+.-..+|.|+.|-....++ .....+.. ....|..++. .....+.-+.+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 47888887654 455556789999997543111 11111211 1234555554 34456666788
Q ss_pred CcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEee--CCc--eeEEEecCCCEEEEecCCCCccC
Q 014534 196 GKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFL--HSACIDENGRVYIFGDRAVDKML 271 (423)
Q Consensus 196 g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~--~~~~lt~~g~v~~~G~n~~gqlg 271 (423)
|.|..|-..... +..... ....|..++. ... ..+.-..+|.|+.|-....
T Consensus 108 g~v~iwd~~~~~---------------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---- 161 (368)
T 3mmy_A 108 KTAKMWDLSSNQ---------------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS---- 161 (368)
T ss_dssp SEEEEEETTTTE---------------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS----
T ss_pred CcEEEEEcCCCC---------------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----
Confidence 999999543210 111111 1235666654 332 3444467889999943221
Q ss_pred cCCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCC
Q 014534 272 FQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 272 ~~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 316 (423)
.....+.....+..+..-....++.+.++.+..|-...
T Consensus 162 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 162 -------NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp -------SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred -------cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 11122223334555555566777888899999998654
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=55.95 E-value=1.6e+02 Score=29.16 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=53.1
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceE--EEEcCCcEEEEecCCCCcccCC
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTL--FLTETGCVYATGLNDFGQLGIS 106 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~--~lt~~G~v~~wG~n~~gqlg~~ 106 (423)
.++.+.+.|+.|.+|-....... .......+... ...|..|+...+..+ .-..||.|.+|-....
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~------~~~~~~~~~~h-~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~------ 462 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKA------YGVAQRRLTGH-SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG------ 462 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTC------SCEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred CEEEEEeCCCcEEEEEccCCCcc------cccccceecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC------
Confidence 45667778999999965432110 00111122221 234666665544333 3456788888854221
Q ss_pred CCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEEe
Q 014534 107 ENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWG 148 (423)
Q Consensus 107 ~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G 148 (423)
.....+..-...|..++.. ....+.-..|+.|..|-
T Consensus 463 ------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 463 ------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp ------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 1112222233467777654 33455556789999995
No 90
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=55.79 E-value=1.4e+02 Score=28.43 Aligned_cols=219 Identities=14% Similarity=0.137 Sum_probs=103.5
Q ss_pred ceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEE
Q 014534 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (423)
Q Consensus 72 ~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (423)
.|..++...+ ..+.-..||.|.+|-.+.. ....+......|..++.. ....+.-.++|.|..|
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 5666665433 3334456788888853211 112222233466666543 3455556678888888
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccc
Q 014534 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (423)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (423)
-.+ ++ ....+.. ....|..++.. ....+.-..++.|..|-.+ +++
T Consensus 372 ~~~--~~------------~~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~---------------- 418 (577)
T 2ymu_A 372 NRN--GQ------------LLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL---------------- 418 (577)
T ss_dssp ETT--CC------------EEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCE----------------
T ss_pred cCC--CC------------EEEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCE----------------
Confidence 532 11 0111111 12345555432 3344555678888888321 110
Q ss_pred cccceeeeccCCccEEEEeeCC--ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeCC--ee
Q 014534 226 EYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY--HT 300 (423)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~~--~~ 300 (423)
...+.. ....|..++... ...+.-..++.|..|-.+. + ....+.. ...|..++...+ ..
T Consensus 419 ---~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~----------~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 419 ---LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--Q----------LLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp ---EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--C----------EEEEEECCSSCEEEEEECTTSCEE
T ss_pred ---EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--C----------EEEEEcCCCCCEEEEEEcCCCCEE
Confidence 001111 112455554432 2333345678888884221 1 0111111 124555554332 23
Q ss_pred EEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCce-eEEE-E-CCcEEEEec
Q 014534 301 CVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH-TAAI-S-EGKILTWGW 366 (423)
Q Consensus 301 ~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h-~~~l-~-~g~vy~wG~ 366 (423)
+.-..|+.|+.|-... ++ ...+. .....|..++...+. .++. . ||.|+.|=.
T Consensus 483 as~~~d~~i~iw~~~~--~~----------~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 483 ASASDDKTVKLWNRNG--QL----------LQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEETTSEEEEEETTS--CE----------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEEeCCCEEEEEcCCC--CE----------EEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 3345788899987321 11 11122 133467777665433 3333 3 899999943
No 91
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=54.55 E-value=1.1e+02 Score=26.64 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=12.2
Q ss_pred CCeeEEEEcCCCEEEEeCC
Q 014534 297 GYHTCVLTSGGELYTWGSN 315 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n 315 (423)
..|++++. +++||..|-.
T Consensus 239 ~~~~~~~~-~~~i~v~GG~ 256 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAGF 256 (306)
T ss_dssp SCCEEEEE-TTEEEEEECB
T ss_pred cceeEEEE-CCEEEEEeCc
Confidence 34555554 7899999953
No 92
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=50.69 E-value=1.3e+02 Score=26.34 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=52.2
Q ss_pred eEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCcc--CCCceEEEEcCCc--ceEEEEcCCcEEEEecCCCCccc
Q 014534 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAF--EKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLG 104 (423)
Q Consensus 29 ~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~--~~~~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg 104 (423)
..+.+.+.|+.|..|-..... .....++..+ ....|..++...+ +.+.-..||.|.+|-....
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~---------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~---- 97 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDD---------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG---- 97 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEET---------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----
T ss_pred cEEEEecCCccEEEecCCCCC---------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----
Confidence 456677789999999543210 0111112112 1234666655443 3334456788888854211
Q ss_pred CCCCCCccccceEeccCCCceEEEEcCCc--eeEEEecCCcEEEEeC
Q 014534 105 ISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGK 149 (423)
Q Consensus 105 ~~~~~~~~~~p~~~~~l~~~i~~i~~G~~--~~~~lt~~G~vy~~G~ 149 (423)
.....+..-...|..++.... ..+.-..||.|..|-.
T Consensus 98 --------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 98 --------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp --------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred --------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 111222223346777665433 4445567888998854
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=49.98 E-value=1.4e+02 Score=26.53 Aligned_cols=258 Identities=10% Similarity=-0.016 Sum_probs=0.0
Q ss_pred cceeeCccCCCceEEEEcCCcceEEEEc--CCcEEEEecCCCCcccCCCCCCcc--ccceEeccCCCceEEEEcCC--ce
Q 014534 61 RPVVCSAFEKHSLKALACGGAHTLFLTE--TGCVYATGLNDFGQLGISENIGYS--LEPLRISGLKKEVVQISTGY--HH 134 (423)
Q Consensus 61 ~p~~~~~~~~~~i~~i~~g~~~~~~lt~--~G~v~~wG~n~~gqlg~~~~~~~~--~~p~~~~~l~~~i~~i~~G~--~~ 134 (423)
.+..+..+....|..++...+..++++. ||.|.+| +.... .....+..-...|..++... ..
T Consensus 2 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw------------~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 2 ATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELY------------EQDGNGWKHARTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CCEEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEE------------EEETTEEEECCCBCCCSSCEEEEEECTTTCC
T ss_pred CcceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEE------------EccCCceEEEEEEecCCceEEEEEEeCCCCE
Q ss_pred eEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEecCCCCccCCCCC
Q 014534 135 SSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQE 214 (423)
Q Consensus 135 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 214 (423)
.+.-..+|.|+.|-..... ................-..++......+.-+.++.|..|
T Consensus 70 l~s~s~d~~v~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw------------- 127 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDG---------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC------------- 127 (377)
T ss_dssp EEEEETTSSEEEC---------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEEC-------------
T ss_pred EEEEeCCCeEEEEEcCCCC---------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEE-------------
Q ss_pred Cccccccccccccc----ceeeeccCCccEEEEeeCCc--eeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecCCC
Q 014534 215 SSILGFLRSTSEYT----PRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP 288 (423)
Q Consensus 215 ~~~~~~~~~~~~~~----p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~~~ 288 (423)
...... ...+.......|..++.... ..+.-..+|.|+.|-...................+.....
T Consensus 128 --------d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (377)
T 3dwl_C 128 --------YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199 (377)
T ss_dssp --------CC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred --------EECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh
Q ss_pred CcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCC----CccccCCCCCCCeEEEecCCceeEEEE--CCcEE
Q 014534 289 YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHS----PERVQGPFSESPVDQVSCGWKHTAAIS--EGKIL 362 (423)
Q Consensus 289 ~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~----p~~v~~~~~~~~i~~i~~G~~h~~~l~--~g~vy 362 (423)
... -..+.-..++...+|+....|.. .+.+-.=+...... ...+.. ....|..++...+..++.+ ++.+.
T Consensus 200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPSGNALAYAGH-DSSVTIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI 275 (377)
T ss_dssp ECC-CCSSSEEEEEECTTSSCEEEEET-TTEEC-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE
T ss_pred hcc-cCCceEEEEEECCCCCEEEEEeC-CCcEEEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE
Q ss_pred EE
Q 014534 363 TW 364 (423)
Q Consensus 363 ~w 364 (423)
.|
T Consensus 276 ~~ 277 (377)
T 3dwl_C 276 LL 277 (377)
T ss_dssp EE
T ss_pred EE
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=46.41 E-value=1.5e+02 Score=25.78 Aligned_cols=201 Identities=9% Similarity=-0.052 Sum_probs=100.4
Q ss_pred CceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--Cc-eeEEEecCCcEE
Q 014534 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YH-HSSAITVDGELY 145 (423)
Q Consensus 71 ~~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~-~~~~lt~~G~vy 145 (423)
..|..++...+ ..+.-..||.|++|-.... .....+..+......|..++.. .. ..+.-..+|.|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQ---------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETT---------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCC---------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 35666665433 3444567899999965321 1011122222334467666653 34 566667789999
Q ss_pred EEeC-CCCCCCCCCCCCCcccccceEeccc-CCceeEEEecC-CceEEEEEcCCcEEEEecCCCCccCCCCCCccccccc
Q 014534 146 MWGK-NSNGQLGLGKKAAKVIPIPTKVECL-SGIFTKQAALG-FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (423)
Q Consensus 146 ~~G~-n~~gqlg~~~~~~~~~~~p~~i~~~-~~~~i~~i~~G-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~ 222 (423)
.|-. .. +++ ..+... ....|..++.. ....+.-..++.|..|-...... ...
T Consensus 83 ~wd~~~~-~~~-------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~-------- 137 (342)
T 1yfq_A 83 KVDLIGS-PSF-------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVI-------- 137 (342)
T ss_dssp EECSSSS-SSE-------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCE--------
T ss_pred EEEeccC-Cce-------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccc--------
Confidence 9954 22 111 111110 12234444432 55666677889999994321000 000
Q ss_pred ccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeee--cCCCCcceEEee---C
Q 014534 223 STSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI--SKLPYSEEVVCG---G 297 (423)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v--~~~~~i~~i~~G---~ 297 (423)
.....+..... ....|..++......++.+.++.|+.|-....+. ...... .....+..++.. .
T Consensus 138 -~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 138 -AVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp -EEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGG
T ss_pred -cccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCC
Confidence 00000000000 1235667777666666668889999996543110 001111 111235555543 2
Q ss_pred CeeEEEEcCCCEEEEeCCC
Q 014534 298 YHTCVLTSGGELYTWGSNE 316 (423)
Q Consensus 298 ~~~~~lt~~g~vy~wG~n~ 316 (423)
...++-..+|.+..|-...
T Consensus 207 ~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp CEEEEEETTSEEEEEECCT
T ss_pred CEEEEEecCCcEEEEEEcC
Confidence 4455567889998887654
No 95
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=45.83 E-value=1.8e+02 Score=29.40 Aligned_cols=132 Identities=13% Similarity=0.011 Sum_probs=71.6
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcC--CcceEEEEcCCcE
Q 014534 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCV 92 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~lt~~G~v 92 (423)
++|.......+.++..++.-++.|++|.--..+ +..+...-......++..++++|+.+-.. ..+.++.|++|.+
T Consensus 501 ~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~---lP~~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~v 577 (716)
T 1zvu_A 501 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT---LPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 577 (716)
T ss_dssp ----CCEEECCCSSSCEEEEETTSEEEEECTTT---SCCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEE
T ss_pred CCCeEEEEEEecCCCEEEEEecCCcEEEEEeee---cccccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceE
Confidence 344445555666666666667999999875443 33321111112223333467788888664 4456778888988
Q ss_pred EEEecCCCCcccCCCCCCccccceEeccCC--CceEE---EEcCCceeEEEecCCcEEEEeCCCCCCCCC
Q 014534 93 YATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQ---ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157 (423)
Q Consensus 93 ~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~--~~i~~---i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 157 (423)
.-.--..+-. .. ......-.+. +.++. +..+..+.++++++|++..+-.++.-.+|.
T Consensus 578 k~~~l~~~~~-----~~---~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 578 FVCTFNDLVA-----RN---RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp EEEEGGGGCC-----CS---TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred EEecHHHhcc-----cC---ccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 7765332210 00 1111111122 12332 224678899999999999998876655554
No 96
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=45.47 E-value=2.4e+02 Score=27.94 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=37.4
Q ss_pred cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEE---cC-Ccee-EEEecCCcEEEEeCCCCCC
Q 014534 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS---TG-YHHS-SAITVDGELYMWGKNSNGQ 154 (423)
Q Consensus 81 ~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~---~G-~~~~-~~lt~~G~vy~~G~n~~gq 154 (423)
.|++++..+|+||+.|-...+.. .. .......+............+. .. ..|+ +++..+|+||+.|.+..+.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~-~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TC-CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cC-CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 56667777999999986433221 00 1111122222221112222222 11 2354 5566899999999875543
No 97
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=43.68 E-value=1.5e+02 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=9.0
Q ss_pred eEEEEcCCCEEEEeC
Q 014534 300 TCVLTSGGELYTWGS 314 (423)
Q Consensus 300 ~~~lt~~g~vy~wG~ 314 (423)
.++++.+|++|.-..
T Consensus 211 ~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 211 GVGINSNGEILIADN 225 (286)
T ss_dssp EEEECTTCCEEEEEC
T ss_pred EEEECCCCCEEEEeC
Confidence 455666666666553
No 98
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=43.39 E-value=1.6e+02 Score=25.33 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEcCCcceEEEE--cCCcEEEEecCCCCcccCCC
Q 014534 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLT--ETGCVYATGLNDFGQLGISE 107 (423)
Q Consensus 30 ~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt--~~G~v~~wG~n~~gqlg~~~ 107 (423)
.+.+...|+.|.+|.... .............|..++...+...+++ .||.|.+|
T Consensus 37 ~l~s~~~dg~i~iw~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw------------ 92 (312)
T 4ery_A 37 WLASSSADKLIKIWGAYD------------GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW------------ 92 (312)
T ss_dssp EEEEEETTSCEEEEETTT------------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE------------
T ss_pred EEEEeeCCCeEEEEeCCC------------cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE------------
Q ss_pred CCCccccceEeccCCCceEEEEc--CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC
Q 014534 108 NIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG 185 (423)
Q Consensus 108 ~~~~~~~p~~~~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G 185 (423)
+.........+..-...|..++. .....+.-..+|.|+.|-.... ..............-..+...
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------KCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSSCEEEEEECTT
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------EEEEEecCCCCcEEEEEEcCC
Q ss_pred CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCCceeEEEecCCCEEEEecC
Q 014534 186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDR 265 (423)
Q Consensus 186 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 265 (423)
....+.-..+|.|..|-.. ............................++-..+|.|..|-..
T Consensus 161 ~~~l~~~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTA------------------SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp SSEEEEEETTSCEEEEETT------------------TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECC------------------CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Q ss_pred CCCccCcCCCCCCCCCeeecCCCCcceEEeeCCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEE
Q 014534 266 AVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQ 345 (423)
Q Consensus 266 ~~gqlg~~~~~~~~~p~~v~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ 345 (423)
....+ ....................+....+.-..||.|+.|-... ...-..+.. ....|..
T Consensus 223 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-----------~~~~~~~~~--h~~~v~~ 284 (312)
T 4ery_A 223 KGKCL-----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-----------KEIVQKLQG--HTDVVIS 284 (312)
T ss_dssp TTEEE-----EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT-----------CCEEEEECC--CSSCEEE
T ss_pred CCcEE-----EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC-----------chhhhhhhc--cCCcEEE
Q ss_pred EecCCceeEEEE-----CCcEEEE
Q 014534 346 VSCGWKHTAAIS-----EGKILTW 364 (423)
Q Consensus 346 i~~G~~h~~~l~-----~g~vy~w 364 (423)
+++.....++.+ |+.|..|
T Consensus 285 ~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 285 TACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp EEECSSSSEEEEEECTTTCCEEEE
T ss_pred EeecCcCCceEEEEccCCccEEEe
No 99
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=43.17 E-value=2.3e+02 Score=27.09 Aligned_cols=108 Identities=8% Similarity=0.046 Sum_probs=56.8
Q ss_pred ceEEEEcCCc---ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEe-c---cCCCceEEEEc-CCceeEEEecCCc
Q 014534 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI-S---GLKKEVVQIST-GYHHSSAITVDGE 143 (423)
Q Consensus 72 ~i~~i~~g~~---~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~-~---~l~~~i~~i~~-G~~~~~~lt~~G~ 143 (423)
.|..++...+ ..+.-..+|.|++|-..... ....+ . .....|..++. .....+....+|.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCC------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCc
Confidence 5777776544 44455778999999643211 11111 1 22346766665 3445556667899
Q ss_pred EEEEeCCCCCCCCCCCCCCcccccceEeccc---CCceeEEEec-CCceEEEEEcCCcEEEEecC
Q 014534 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECL---SGIFTKQAAL-GFEQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~---~~~~i~~i~~-G~~~~~~lt~~g~v~~~G~n 204 (423)
|..|-...... ...+... ....+..+.. .....++.+.+|.|+.|-..
T Consensus 276 i~~wd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 276 IRVWDVTTSKC-------------VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EEEEETTTTEE-------------EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCcE-------------EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 99996532110 0011100 0112222222 45566677788899988543
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=42.41 E-value=1.6e+02 Score=25.10 Aligned_cols=110 Identities=10% Similarity=-0.046 Sum_probs=53.4
Q ss_pred CceEEEEcCCcce--EEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCCceeEEEecCCcEEEEe
Q 014534 71 HSLKALACGGAHT--LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (423)
Q Consensus 71 ~~i~~i~~g~~~~--~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (423)
..|..|+...+.. +.-..||.|.+|-..... ....+..-...+..++......+.-..++.+..|-
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~------------~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------------EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecCCce------------eEEEecCccceEEEeecCCCEEEEEecCCceEeee
Confidence 3577776654433 334568889998543211 11112212234555555555555556666666664
Q ss_pred CCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEEec
Q 014534 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~G~ 203 (423)
...... ......................+.+.-..+|.|..|-.
T Consensus 136 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 136 VRVAEH-----------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp TTSSSC-----------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred cCCCce-----------eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 332110 01111111112223333344456666678899999954
No 101
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=40.71 E-value=1.8e+02 Score=25.11 Aligned_cols=225 Identities=12% Similarity=-0.015 Sum_probs=108.2
Q ss_pred ceEEEEcCCcceEEE--EcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEE--cCCceeEEEecCCcEEEE
Q 014534 72 SLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMW 147 (423)
Q Consensus 72 ~i~~i~~g~~~~~~l--t~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~ 147 (423)
.|..|+...+...++ ..||.|.+|-.... .....+..-...|..+. ......+.-..++.|..|
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 577777655444443 45888999954221 11122222223444443 344455666778999999
Q ss_pred eCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccc
Q 014534 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (423)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (423)
-..... ....+.. -...|..++.. ....+.-..|+.|..|-.....
T Consensus 83 d~~~~~-------------~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------------------ 130 (304)
T 2ynn_A 83 NYNTGE-------------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------------ 130 (304)
T ss_dssp ETTTCC-------------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------------------
T ss_pred ECCCCc-------------EEEEEeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------------------
Confidence 653211 0111111 12235555543 3344555678899998532110
Q ss_pred cccceeeeccCCccEEEEeeCC---ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeec-CC-CCcceEEee----
Q 014534 226 EYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KL-PYSEEVVCG---- 296 (423)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~-~~-~~i~~i~~G---- 296 (423)
.+.....-....|..++... ...+.-..++.|..|-..... ....+. .. ..+..+..-
T Consensus 131 --~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp --EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCEEEEEECCSTT
T ss_pred --chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----------ccceeccCCcCcEEEEEEEEcCC
Confidence 00001011122455555432 234444678889998542211 011111 11 123333321
Q ss_pred CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE---CCcEEEEec
Q 014534 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS---EGKILTWGW 366 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~---~g~vy~wG~ 366 (423)
..+.+.-..||.|..|-...... ...+. -....|..++.......+++ ||.|..|=.
T Consensus 198 ~~~l~s~s~D~~i~iWd~~~~~~-----------~~~~~--~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 198 KPYMITASDDLTIKIWDYQTKSC-----------VATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp CCEEEEEETTSEEEEEETTTTEE-----------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEcCCCeEEEEeCCCCcc-----------ceeeC--CCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 12345556889999997543111 11111 12345666666555443333 899999976
No 102
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=39.38 E-value=1.7e+02 Score=24.42 Aligned_cols=15 Identities=13% Similarity=0.269 Sum_probs=9.0
Q ss_pred eEEEEcCCCEEEEeC
Q 014534 300 TCVLTSGGELYTWGS 314 (423)
Q Consensus 300 ~~~lt~~g~vy~wG~ 314 (423)
.++++.+|.+|.-..
T Consensus 196 ~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEH 210 (270)
T ss_dssp EEEECTTCCEEEEET
T ss_pred EEEECCCCCEEEEEC
Confidence 455666666666543
No 103
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=39.23 E-value=1.8e+02 Score=25.10 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=71.8
Q ss_pred hhhhhhccccceeeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccc--eeeCccCCCceEEEEcC--CcceEEEEcCC
Q 014534 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACG--GAHTLFLTETG 90 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p--~~~~~~~~~~i~~i~~g--~~~~~~lt~~G 90 (423)
++|..+.+.....+..++.-++.|++|-.-..+ +..+ ...-.| ..++..++.+|+.+... ..+.+++|++|
T Consensus 31 e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~e---lp~~--r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G 105 (256)
T 1zvt_A 31 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT---LPSA--RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAG 105 (256)
T ss_dssp TTCCEEEEEEEETTSCEEEEETTSEEEEECGGG---SCCS--SSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTS
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CCCc--CCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCC
Confidence 344444555555544445556899998886554 2222 111122 23444466788888663 44577889999
Q ss_pred cEEEEecCCCCcccCCCCCCccccceEeccCCCceEEE--E-cCCceeEEEecCCcEEEEeCCCCCCCCC
Q 014534 91 CVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI--S-TGYHHSSAITVDGELYMWGKNSNGQLGL 157 (423)
Q Consensus 91 ~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i--~-~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 157 (423)
.+.-.-..++-... ..-..-..+.. .+.++.+ . .+..+.++++++|++..+-.++...+|.
T Consensus 106 ~~Kr~~~~e~~~~~-----r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 106 YGFVCTFNDLVARN-----RAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp EEEEEEGGGGCCCS-----TTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred eEEEeEHHHhcccC-----cCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 88766543321100 00000111111 1133322 2 3677899999999999988776655554
No 104
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=37.98 E-value=2.2e+02 Score=25.35 Aligned_cols=186 Identities=11% Similarity=0.101 Sum_probs=89.3
Q ss_pred ceEEEEc-CCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEec--CCceEEEEEcCCcEEE
Q 014534 124 EVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLS 200 (423)
Q Consensus 124 ~i~~i~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~ 200 (423)
.|..++. .....+.-..+|.|..|-...... .........--...|..|+. ...+.+.-..++.|..
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~----------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENET----------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSS----------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCc----------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 5777764 445566667789999996432111 11111110001224555544 3344555567888888
Q ss_pred EecCCCCccCCCCCCcccccccccccccceeeecc--CCccEEEEeeCCc---eeEEEecCCCEEEEecCCCCccCcCCC
Q 014534 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEG 275 (423)
Q Consensus 201 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~ 275 (423)
|-.... ..+..+ ....|..++.... ..+.-..|+.|..|=.....
T Consensus 154 wd~~~~-----------------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~------- 203 (344)
T 4gqb_B 154 WDLAQQ-----------------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK------- 203 (344)
T ss_dssp EETTTT-----------------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-------
T ss_pred EECCCC-----------------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-------
Confidence 843211 111111 1235666655432 22334578999999432210
Q ss_pred CCCCCCeeecCC---CCcceEEee--CCeeE-EEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecC
Q 014534 276 NHARRPSLISKL---PYSEEVVCG--GYHTC-VLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCG 349 (423)
Q Consensus 276 ~~~~~p~~v~~~---~~i~~i~~G--~~~~~-~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G 349 (423)
....+... ..+..++.. ..+.+ .-..||.|..|-...... ...+. .....|..++..
T Consensus 204 ----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-----------~~~~~--~h~~~v~~v~fs 266 (344)
T 4gqb_B 204 ----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-----------VLSSA--VHSQCVTGLVFS 266 (344)
T ss_dssp ----CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-----------CEEEE--CCSSCEEEEEEC
T ss_pred ----eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-----------EEEEc--CCCCCEEEEEEc
Confidence 00111110 123344432 22233 346788899986543111 11122 134567788765
Q ss_pred Cc--eeEE-EE-CCcEEEEec
Q 014534 350 WK--HTAA-IS-EGKILTWGW 366 (423)
Q Consensus 350 ~~--h~~~-l~-~g~vy~wG~ 366 (423)
.+ ..++ -. |+.|+.|-.
T Consensus 267 p~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 267 PHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp SSSSCCEEEEETTSCEEEECT
T ss_pred cCCCeEEEEEeCCCeEEEEEC
Confidence 43 2333 34 899999965
No 105
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=37.04 E-value=2.2e+02 Score=25.23 Aligned_cols=149 Identities=8% Similarity=0.024 Sum_probs=75.4
Q ss_pred CceEEEEcCC---cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEecc---CCCceEEEEc--CCceeEEEecCC
Q 014534 71 HSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG---LKKEVVQIST--GYHHSSAITVDG 142 (423)
Q Consensus 71 ~~i~~i~~g~---~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~---l~~~i~~i~~--G~~~~~~lt~~G 142 (423)
..|..++... ...+.-..||.|.+|-... . ....+.. ....|..++. .....+.-..+|
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-S------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETTS-C------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-C------------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence 4677777643 4455556789999996531 0 1111111 1124555543 345566667789
Q ss_pred cEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCCc---eEEEEEcCCcEEEEecCCCCccCCCCCCcccc
Q 014534 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (423)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 219 (423)
.|+.|-.. ++ . ...+.. ....|..++.... ..+.-..++.|..|-......
T Consensus 186 ~i~i~d~~--~~-----------~-~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------- 239 (383)
T 3ei3_B 186 RLLLLGLD--GH-----------E-IFKEKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD----------- 239 (383)
T ss_dssp EEEEEETT--SC-----------E-EEEEEC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-----------
T ss_pred CEEEEECC--CC-----------E-EEEecc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-----------
Confidence 99998652 10 0 111111 1234555554333 445556788899985432100
Q ss_pred cccccccccceeeeccCCccEEEEeeCC---ceeEEEecCCCEEEEecC
Q 014534 220 FLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDR 265 (423)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n 265 (423)
...+.... .....|..++... ...+....+|.|+.|-..
T Consensus 240 ------~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 240 ------KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp ------TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred ------ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 00011111 1123566666543 444555678899999544
No 106
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=36.93 E-value=2e+02 Score=24.75 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=11.7
Q ss_pred ceEEEEEcCCcEEEEec
Q 014534 187 EQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 187 ~~~~~lt~~g~v~~~G~ 203 (423)
.|++++. +++||++|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 4666655 779999985
No 107
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=36.91 E-value=2.2e+02 Score=25.03 Aligned_cols=102 Identities=11% Similarity=-0.008 Sum_probs=49.2
Q ss_pred cEEEEeeCC--ceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC---CCCcceEEeeC--CeeEEEEcCCCEEE
Q 014534 239 KVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK---LPYSEEVVCGG--YHTCVLTSGGELYT 311 (423)
Q Consensus 239 ~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~---~~~i~~i~~G~--~~~~~lt~~g~vy~ 311 (423)
.|..++... ...+.-..+|.|..|-......+ ..+.. ...|..++... ...++-..||.|+.
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL-----------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-----------EEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 455555432 33444467888888854321111 00110 11244444332 33444567888888
Q ss_pred EeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCcee-EEE-E-CCcEEEE
Q 014534 312 WGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AAI-S-EGKILTW 364 (423)
Q Consensus 312 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~-~~l-~-~g~vy~w 364 (423)
|-......+ ..+. -....|..++...+.. ++- . |+.|..|
T Consensus 297 wd~~~~~~~-----------~~~~--~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 297 WDALKADRA-----------GVLA--GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EETTTCCEE-----------EEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEcccCcEe-----------eEee--cCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 875431111 1111 1334566666654433 333 3 8888888
No 108
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=36.46 E-value=2.1e+02 Score=24.63 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=15.3
Q ss_pred CccEEEEeeCCceeEEEecC-CC-EEEEe
Q 014534 237 GVKVKIAAAGFLHSACIDEN-GR-VYIFG 263 (423)
Q Consensus 237 ~~~i~~i~~g~~~~~~lt~~-g~-v~~~G 263 (423)
+..+.-........++++.+ |+ +|.++
T Consensus 175 ~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 175 NGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 33444444445567777777 65 45554
No 109
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=36.40 E-value=2.3e+02 Score=25.18 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=108.1
Q ss_pred ceEEEEcCC-cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcCC--ceeEEEecCCcEEEEe
Q 014534 72 SLKALACGG-AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWG 148 (423)
Q Consensus 72 ~i~~i~~g~-~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G~--~~~~~lt~~G~vy~~G 148 (423)
.|..|+... ...+.-..||.|.+|-...... ..........-...|..|+... ...+.-..+|.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 466776543 3444456688899995432110 0001111111234677776543 3444556788899985
Q ss_pred CCCCCCCCCCCCCCcccccceEecccC--CceeEEEecCC---ceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccc
Q 014534 149 KNSNGQLGLGKKAAKVIPIPTKVECLS--GIFTKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (423)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~--~~~i~~i~~G~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~ 223 (423)
.... ..+..+. ...|..++... ...+.-..|+.|..|-......
T Consensus 156 ~~~~----------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--------------- 204 (344)
T 4gqb_B 156 LAQQ----------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--------------- 204 (344)
T ss_dssp TTTT----------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---------------
T ss_pred CCCC----------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce---------------
Confidence 4321 1111111 23455555432 2334456789999994321100
Q ss_pred cccccceeee-ccCCccEEEEeeC---CceeEEEecCCCEEEEecCCCCccCcCCCCCCCCCeeecC-CCCcceEEeeC-
Q 014534 224 TSEYTPRLIK-ELEGVKVKIAAAG---FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGG- 297 (423)
Q Consensus 224 ~~~~~p~~i~-~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~i~~i~~G~- 297 (423)
...+. ......+..++.. ....+.-..+|.|..|=.... .....+.. ...|..++...
T Consensus 205 -----~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-----------~~~~~~~~h~~~v~~v~fsp~ 268 (344)
T 4gqb_B 205 -----ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-----------SCVLSSAVHSQCVTGLVFSPH 268 (344)
T ss_dssp -----EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------------CCEEEECCSSCEEEEEECSS
T ss_pred -----eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-----------cEEEEEcCCCCCEEEEEEccC
Confidence 00010 0111234444432 222233367888888843221 11122222 22466666532
Q ss_pred --CeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCc-eeEE-E-E-CCcEEEEec
Q 014534 298 --YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWK-HTAA-I-S-EGKILTWGW 366 (423)
Q Consensus 298 --~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~-h~~~-l-~-~g~vy~wG~ 366 (423)
.+.+.-..||.|+.|-... +++ +...-....|..++.... ..++ - . |++|..|=.
T Consensus 269 g~~~lasgs~D~~i~vwd~~~-~~~-------------~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 269 SVPFLASLSEDCSLAVLDSSL-SEL-------------FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp SSCCEEEEETTSCEEEECTTC-CEE-------------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCeEEEEEeCCCeEEEEECCC-CcE-------------EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 2334457899999996432 111 111113346788876533 2333 3 3 899999965
No 110
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=36.28 E-value=2.4e+02 Score=25.33 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=39.6
Q ss_pred CceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEE
Q 014534 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (423)
Q Consensus 71 ~~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~ 146 (423)
..|..++...+ ..+.-..||.|.+|-..... ....+..-...|..++.. ....+.-..+|.|..
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 46777776533 44445678999999643211 122233233466666653 334555667889999
Q ss_pred EeCC
Q 014534 147 WGKN 150 (423)
Q Consensus 147 ~G~n 150 (423)
|-..
T Consensus 208 wd~~ 211 (420)
T 3vl1_A 208 WECG 211 (420)
T ss_dssp EETT
T ss_pred eECC
Confidence 9653
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=36.25 E-value=2e+02 Score=24.53 Aligned_cols=120 Identities=8% Similarity=-0.094 Sum_probs=63.9
Q ss_pred ceEEEEcCCc--ceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC----CceeEEEecCCcEE
Q 014534 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (423)
Q Consensus 72 ~i~~i~~g~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G----~~~~~~lt~~G~vy 145 (423)
.|..|+...+ ..+.-..||.|.+|-..... ........+..-...|..++.. ....+.-..+|.|.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT--------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSS--------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC--------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 5777765433 34445668999999653211 1001112223334578888764 34556667799999
Q ss_pred EEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC----CceEEEEEcCCcEEEEecC
Q 014534 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G----~~~~~~lt~~g~v~~~G~n 204 (423)
.|-......... .. ...+..........|..++.. ....+..+.+|.|+.|-..
T Consensus 85 vwd~~~~~~~~~---~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 85 LWEEDPDQEECS---GR--RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEEECTTSCTTS---SC--SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEecCCCccccc---cc--CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 997643211100 00 001111111123456666655 3456666789999999654
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=35.60 E-value=2.3e+02 Score=25.04 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=98.7
Q ss_pred CceEEEEcCC---cceEEEEcCCcEEEEecCCCCcccCCCCCCccccce-Ee-----ccCCCceEEEEc---CCceeEEE
Q 014534 71 HSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL-RI-----SGLKKEVVQIST---GYHHSSAI 138 (423)
Q Consensus 71 ~~i~~i~~g~---~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~-~~-----~~l~~~i~~i~~---G~~~~~~l 138 (423)
..|..++... ...+.-..||.|.+|-........ .....+. .. ......|..++. +....+.-
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-----CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-----eEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 4677777654 344445678999999754322110 0000000 00 112346777775 33456666
Q ss_pred ecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC-----CceEEEEEcCCcEEEEecCCCCccCCCC
Q 014534 139 TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWGAGGSGRLGHGQ 213 (423)
Q Consensus 139 t~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G-----~~~~~~lt~~g~v~~~G~n~~gqlg~~~ 213 (423)
..+|.|..|-..... ....+.. ...+..+... ....++-+.+|.|+.|-......
T Consensus 119 ~~d~~i~iwd~~~~~-------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----- 178 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQ-------------TADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----- 178 (408)
T ss_dssp ETTSEEEEEETTTTE-------------EEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-----
T ss_pred eCCCeEEEeeCCCCc-------------cceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-----
Confidence 779999999653210 0111111 1123333322 12455667889999995432110
Q ss_pred CCcccccccccccccceeeeccCCccEEEEeeCCce---eEEEecCCCEEEEecCCCCccCcC----CCCCCCCCe-e-e
Q 014534 214 ESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH---SACIDENGRVYIFGDRAVDKMLFQ----EGNHARRPS-L-I 284 (423)
Q Consensus 214 ~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~---~~~lt~~g~v~~~G~n~~gqlg~~----~~~~~~~p~-~-v 284 (423)
...+. .....|..++..... .+.-..+|.|+.|-.......-.. .......+. . .
T Consensus 179 ---------------~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 179 ---------------SHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp ---------------CEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred ---------------eeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 01111 112245555544332 344578899999965432211000 000000000 0 0
Q ss_pred cCCCCcceEEeeC--CeeEEEEcCCCEEEEeCCCC
Q 014534 285 SKLPYSEEVVCGG--YHTCVLTSGGELYTWGSNEN 317 (423)
Q Consensus 285 ~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~ 317 (423)
.....|..++... .+.+....||.++.|-....
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 1112466665533 34566678999999987653
No 113
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=35.51 E-value=2.2e+02 Score=24.68 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=12.0
Q ss_pred CceEEEEEcCCcEEEEec
Q 014534 186 FEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 186 ~~~~~~lt~~g~v~~~G~ 203 (423)
..|++++. +++||++|-
T Consensus 207 ~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 207 SGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEEeC
Confidence 34665555 789999984
No 114
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=35.03 E-value=2.6e+02 Score=25.41 Aligned_cols=104 Identities=9% Similarity=0.110 Sum_probs=55.5
Q ss_pred ceEEEEcCCcceEEE--EcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--CceeEEEecCCcEEEE
Q 014534 72 SLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (423)
Q Consensus 72 ~i~~i~~g~~~~~~l--t~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (423)
.|..++......+++ ..||.|.+|-.... .....+..-...|..++.. ....+.-..||.|..|
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETG------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 577777665544444 46888999964321 0112223233467666653 3344445567888888
Q ss_pred eCCCCCCCCCCCCCCcccccceEeccc--CCceeEEEec--CCceEEEEEcCCcEEEEec
Q 014534 148 GKNSNGQLGLGKKAAKVIPIPTKVECL--SGIFTKQAAL--GFEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~--~~~~i~~i~~--G~~~~~~lt~~g~v~~~G~ 203 (423)
-...... +..+ -...|..++. ...+.+.-..++.|..|-.
T Consensus 178 d~~~~~~----------------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 178 DFQGFEC----------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp ETTSSCE----------------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred eCCCCce----------------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 5432111 1111 1123444443 3445666678899999954
No 115
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=31.78 E-value=2.5e+02 Score=24.29 Aligned_cols=78 Identities=8% Similarity=0.034 Sum_probs=43.6
Q ss_pred ccceeeCccCCCceEEEEcCCcc--eEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEEcC--Ccee
Q 014534 60 WRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHS 135 (423)
Q Consensus 60 ~~p~~~~~~~~~~i~~i~~g~~~--~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~~G--~~~~ 135 (423)
..+..+.... ..|..++...+. .+.-..||.|++|-.... .....+..-...|..++.. ....
T Consensus 23 ~~~~~l~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l 89 (369)
T 3zwl_B 23 MKAIKLTGHE-RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTGTIWSIDVDCFTKYC 89 (369)
T ss_dssp EEEEEEECCS-SCEEEEEECTTSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccEEEEEee-ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCCcEEEEEEcCCCCEE
Confidence 3444444333 357777765433 334456888999954321 1112223233467777654 3455
Q ss_pred EEEecCCcEEEEeCC
Q 014534 136 SAITVDGELYMWGKN 150 (423)
Q Consensus 136 ~~lt~~G~vy~~G~n 150 (423)
+....+|.|+.|-..
T Consensus 90 ~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 90 VTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEETTTEEEEEETT
T ss_pred EEEeCCCeEEEEECC
Confidence 666778999999653
No 116
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=31.40 E-value=2.6e+02 Score=24.26 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=11.7
Q ss_pred cceEEEEcCCcEEEEecC
Q 014534 81 AHTLFLTETGCVYATGLN 98 (423)
Q Consensus 81 ~~~~~lt~~G~v~~wG~n 98 (423)
.|+++. -+++||++|-.
T Consensus 141 ~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred ceeEEE-ECCEEEEEeCC
Confidence 344444 58899999854
No 117
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=28.64 E-value=1.9e+02 Score=21.96 Aligned_cols=101 Identities=10% Similarity=-0.077 Sum_probs=49.1
Q ss_pred EecCCceEEEEEcCCcEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEe-eCCceeEEEecCCCEE
Q 014534 182 AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA-AGFLHSACIDENGRVY 260 (423)
Q Consensus 182 i~~G~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~-~g~~~~~~lt~~g~v~ 260 (423)
-.|...+-+-+..||+|-...... +...-.++..... .++.|. .-..+.+++..+|+||
T Consensus 11 ~~~~~g~~L~I~~dG~V~Gt~~~~-------------------~~~s~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~ 70 (132)
T 3q7x_A 11 RSTETGQFLRINPDGTVDGTRDRS-------------------DPGIQFQISPEGN-GEVLLRSTETGQFLRINPDGTVD 70 (132)
T ss_dssp EETTTCCEEEECTTSBEEEECCTT-------------------CGGGCEEEEEEET-TEEEEEETTTCCEEEECTTSBEE
T ss_pred eeccCcEEEEECCCCcEEeecCCC-------------------CCCcEEEEEeccc-CEEEEEEEcccEEEEECCCCCEe
Confidence 345566667778899998764321 1112122222221 233333 2334567889999999
Q ss_pred EEecCCCCccCcCCCCCCCCCeeecCCCCcceEE-eeCCeeEEEEcCCCEEE
Q 014534 261 IFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV-CGGYHTCVLTSGGELYT 311 (423)
Q Consensus 261 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~i~~i~-~G~~~~~~lt~~g~vy~ 311 (423)
.--... ........+......+.+. .-....+++..+|++|.
T Consensus 71 Gs~~~s---------~ec~flE~~~~~~g~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 71 GTRDRS---------DPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp EECC-C---------CGGGCEEEEEEETTEEEEEETTTCCEEEECTTSBEEE
T ss_pred eccCCC---------CCceeEEEEeecCcEEEEEeccCCeEEEECCCCcCcC
Confidence 742211 0010111111111122221 22334788999999996
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=27.07 E-value=2.9e+02 Score=23.46 Aligned_cols=121 Identities=7% Similarity=0.058 Sum_probs=61.1
Q ss_pred CceEEEEcCC--ceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC----CceEEEEEcCC
Q 014534 123 KEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGG 196 (423)
Q Consensus 123 ~~i~~i~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G----~~~~~~lt~~g 196 (423)
..|..++... ...+.-..+|.|..|-...... .......+.. ....|..++.. ....+.-..+|
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS---------NWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------CEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------cceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 3677766533 3455556789999996542110 0011111111 23456766654 34555567889
Q ss_pred cEEEEecCCCCccCCCCCCcccccccccccccceeeeccCCccEEEEeeCC----ceeEEEecCCCEEEEecC
Q 014534 197 KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF----LHSACIDENGRVYIFGDR 265 (423)
Q Consensus 197 ~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~~G~n 265 (423)
.|..|-......... .....+..........|..++... ...+....+|.|+.|=..
T Consensus 82 ~v~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 82 TVKLWEEDPDQEECS------------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp CEEEEEECTTSCTTS------------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred eEEEEecCCCccccc------------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 999996543211000 000011111111233566766653 345556788999999543
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=25.88 E-value=3.3e+02 Score=23.72 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=52.1
Q ss_pred ceEEEEcCC----cceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEec--cCCCceEEEEcCCce-eEE-EecCCc
Q 014534 72 SLKALACGG----AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GLKKEVVQISTGYHH-SSA-ITVDGE 143 (423)
Q Consensus 72 ~i~~i~~g~----~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~--~l~~~i~~i~~G~~~-~~~-lt~~G~ 143 (423)
.|..++... ...+.-..||.|.+|-..... +..+. .....|..++..... .++ -..+|.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------------~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-------------QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSC-------------EEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-------------EEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence 466666544 233335668888888643211 11111 112245555543332 222 357889
Q ss_pred EEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecCC-ceEEEEEcCCcEEEEecC
Q 014534 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-EQSVAVTGGGKVLSWGAG 204 (423)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-~~~~~lt~~g~v~~~G~n 204 (423)
|..|-...... .+..+..--...|..++... ...++...++.|..|-..
T Consensus 194 i~iwd~~~~~~------------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~ 243 (343)
T 3lrv_A 194 LDVYNLSSPDQ------------ASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLR 243 (343)
T ss_dssp EEEEESSCTTS------------CCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETT
T ss_pred EEEEECCCCCC------------CccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcC
Confidence 99986543211 11112110123566665432 234444446699999643
No 120
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=25.29 E-value=3.2e+02 Score=23.35 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=15.5
Q ss_pred eeEEEecC--CceEEEEEcCCcEEEEec
Q 014534 178 FTKQAALG--FEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 178 ~i~~i~~G--~~~~~~lt~~g~v~~~G~ 203 (423)
.|..|+.. ....+.-..+|.|..|-.
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 45555543 334444567888888854
No 121
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=25.12 E-value=2.3e+02 Score=21.57 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=53.4
Q ss_pred EcCCcceEEEEcCCcEEEEecCCCCcccCCCCCCccccceEeccCCCceEEEE-cCCceeEEEecCCcEEEEeCCCCCCC
Q 014534 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS-TGYHHSSAITVDGELYMWGKNSNGQL 155 (423)
Q Consensus 77 ~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~~~~l~~~i~~i~-~G~~~~~~lt~~G~vy~~G~n~~gql 155 (423)
.|...+.+-+..||+|-...... +.........+. ..++.|. .-....+++..+|+||.--..
T Consensus 12 ~~~~g~~L~I~~dG~V~Gt~~~~--------~~~s~l~~~~v~---~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~----- 75 (132)
T 3q7x_A 12 STETGQFLRINPDGTVDGTRDRS--------DPGIQFQISPEG---NGEVLLRSTETGQFLRINPDGTVDGTRDR----- 75 (132)
T ss_dssp ETTTCCEEEECTTSBEEEECCTT--------CGGGCEEEEEEE---TTEEEEEETTTCCEEEECTTSBEEEECC------
T ss_pred eccCcEEEEECCCCcEEeecCCC--------CCCcEEEEEecc---cCEEEEEEEcccEEEEECCCCCEeeccCC-----
Confidence 45666777788899988764321 011111222222 2344443 345567888999999974221
Q ss_pred CCCCCCCcccccceEecccCCceeEEEecCCceEEEEEcCCcEEEE
Q 014534 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (423)
Q Consensus 156 g~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~lt~~g~v~~~ 201 (423)
..+...............++.+..|. .+++..+|++|.-
T Consensus 76 -----s~ec~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 76 -----SDPGIQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp -----CCGGGCEEEEEEETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred -----CCCceeEEEEeecCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 11111111111112223344555555 8899999999964
No 122
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.23 E-value=3.8e+02 Score=23.85 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCeeEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCccccCCCCCCCeEEEecCCceeEEEE---CCcEEEEec
Q 014534 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS---EGKILTWGW 366 (423)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~l~---~g~vy~wG~ 366 (423)
....++-..||.|+.|-......+ .....+. .-....|..++...+...+++ |+.|..|-.
T Consensus 310 g~~l~~g~~dg~i~vwd~~~~~~~--------~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 310 GRLLFAGYSNGDCYVWDTLLAEMV--------LNLGTLQ-NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp SSEEEEECTTSCEEEEETTTCCEE--------EEECCSC-SSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred CCEEEEEECCCCEEEEECCCCceE--------EEEeccc-CCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 344555667899999975431111 0000000 012335666666544433333 899999976
No 123
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=23.71 E-value=1.7e+02 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=13.0
Q ss_pred CceEEEEEcCCcEEEEec
Q 014534 186 FEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 186 ~~~~~~lt~~g~v~~~G~ 203 (423)
..|++++ .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4566666 7889999985
No 124
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=22.57 E-value=3.7e+02 Score=23.16 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=11.3
Q ss_pred ceEEEEEcCCcEEEEec
Q 014534 187 EQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 187 ~~~~~lt~~g~v~~~G~ 203 (423)
.|++++. ++++|++|-
T Consensus 189 ~~~~~~~-~~~iyv~GG 204 (315)
T 4asc_A 189 LFGATVH-DGRIIVAAG 204 (315)
T ss_dssp SCEEEEE-TTEEEEEEE
T ss_pred ceEEEEE-CCEEEEEec
Confidence 4555554 779999985
No 125
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=22.24 E-value=3.5e+02 Score=22.66 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=9.1
Q ss_pred eEEEEEcCCcEEEEe
Q 014534 188 QSVAVTGGGKVLSWG 202 (423)
Q Consensus 188 ~~~~lt~~g~v~~~G 202 (423)
+.++++.+|++|+..
T Consensus 167 ~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 167 NGVVVNDKQEIFISD 181 (286)
T ss_dssp EEEEECSSSEEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 456666666666654
No 126
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=20.72 E-value=4e+02 Score=22.73 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=70.6
Q ss_pred eeeEEeeccCCcEEEEeEcCCCCCcCCCCCCCcccceeeCccCCCceEEEEc--CCcceEEEEcCCcEEEEecCCCCccc
Q 014534 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALAC--GGAHTLFLTETGCVYATGLNDFGQLG 104 (423)
Q Consensus 27 ~~~~~~~~~~~g~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~i~~i~~--g~~~~~~lt~~G~v~~wG~n~~gqlg 104 (423)
...++.+...|+.|.+|-.... .....+.. ....|..++. .....+.-..||.|.+|-....
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~---- 87 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQ-----------VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---- 87 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC----
T ss_pred CCCEEEEEcCCCcEEEEECCCC-----------ceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC----
Confidence 3455666668888988854321 11112221 1223444443 3334444566888888854321
Q ss_pred CCCCCCccccceEeccCCCceEEEEcCCc--eeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEE
Q 014534 105 ISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (423)
Q Consensus 105 ~~~~~~~~~~p~~~~~l~~~i~~i~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i 182 (423)
.....+..-...|..|+.... ..+.-..||.|..|-..... .....+.. ....|..+
T Consensus 88 --------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------------~~~~~~~~-h~~~v~~v 146 (304)
T 2ynn_A 88 --------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEG-HEHFVMCV 146 (304)
T ss_dssp --------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------------EEEEEECC-CCSCEEEE
T ss_pred --------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------------chhhhhcc-cCCcEEEE
Confidence 112223333446777765433 44455678999998642110 00011111 12345555
Q ss_pred ecC---CceEEEEEcCCcEEEEec
Q 014534 183 ALG---FEQSVAVTGGGKVLSWGA 203 (423)
Q Consensus 183 ~~G---~~~~~~lt~~g~v~~~G~ 203 (423)
+.. ....+.-..++.|..|-.
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEET
T ss_pred EECCCCCCEEEEEeCCCeEEEEEC
Confidence 543 234555577899999954
No 127
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.11 E-value=4.1e+02 Score=22.68 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=69.0
Q ss_pred EcCCceeEEEecCCcEEEEeCCCCCCCCCCCCCCcccccceEecccCCceeEEEecC--CceEEEEEcCCcEEEEecCCC
Q 014534 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGS 206 (423)
Q Consensus 129 ~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~~G~n~~ 206 (423)
+.+..+.+++|+.|++|.+-..+.... .... .+....+...++++|+.+... ..+.+++|++|.+.-.-..++
T Consensus 41 ~~t~~~ll~~T~~Gr~~~~~~~elp~~---r~~G--~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 41 GKSNQPVVFVDSTGRSYAIDPITLPSA---RGQG--EPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp EETTSCEEEEETTSEEEEECGGGSCCS---SSCC--EEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCCCc---CCCC--eEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 446678899999999999876543211 1111 112123333356778887663 445778899998887755443
Q ss_pred CccCCCCCCcccccccccccccceeeecc-CCccEEE--Ee-eCCceeEEEecCCCEEEEecCCCCccCc
Q 014534 207 GRLGHGQESSILGFLRSTSEYTPRLIKEL-EGVKVKI--AA-AGFLHSACIDENGRVYIFGDRAVDKMLF 272 (423)
Q Consensus 207 gqlg~~~~~~~~~~~~~~~~~~p~~i~~~-~~~~i~~--i~-~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 272 (423)
-...++. ..+..+ ++..++. +. .+....+++|++|++..+-....-.+|.
T Consensus 116 ~~~~r~G----------------~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 116 VARNRAG----------------KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCCSTTC----------------EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred cccCcCc----------------eEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 2111110 011111 1112222 22 3566788899999999887665444443
Done!