BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014535
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
Length = 238
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 160 RLPLLILSMKESDNENRPAVVF-LHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERA 218
RL L LS+ E A++ LH + KE + LL YA RG++ + D+ HGER
Sbjct: 7 RLTLAGLSVLARIPEAPKALLLALHGLQGSKEHILALLPGYAERGFLLLAFDAPRHGERE 66
Query: 219 ----SSKT------TYRDAL 228
SSK+ YR AL
Sbjct: 67 GPPPSSKSPRYVEEVYRVAL 86
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 169 KESDNENRPAVVFLHSTRKCK---EWLRPLLEAYASRGYIAIG----IDSRYHGERASSK 221
+ S R +VFLH + K E+ P L A + G AI ID HG+ A +
Sbjct: 45 RRSRTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAV-R 103
Query: 222 TTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHA 278
R +W +G A D++K+A D P + G S+GG A
Sbjct: 104 NRGRLGTNFNWIDG---------ARDVLKIATXELGSIDSHPALNVVIGHSMGGFQA 151
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 249 IKLADYLTQREDIDPTRIG-ITGESLGGMHAWYA 281
+ L D + ED+DP R+G + G +GGM W A
Sbjct: 81 LALEDAGLKPEDLDPERVGTLVGTGIGGMETWEA 114
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 248 LIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAAD 284
+IK+ L +ID RI ITG S+GG W A +
Sbjct: 247 VIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIME 283
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 174 ENRP-AVVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERAS--SKTTYRDALVS 230
EN P V+ +H +RPL EAYA GY + HG +TT+ D V+
Sbjct: 37 ENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHD-WVA 95
Query: 231 SWKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAA 282
S + G W L QR I +TG S+GG Y A
Sbjct: 96 SVEEG--------YGW--------LKQRCQ----TIFVTGLSMGGTLTLYLA 127
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 24/119 (20%)
Query: 172 DNENRPAVVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDALVSS 231
DN N+ V+ +R + W+ L I G R H D SS
Sbjct: 70 DNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSG--CRGH-----------DGFTSS 116
Query: 232 WKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGF 290
W++ + DT K+ D + + D R+ TG SLGG A A AD R G+
Sbjct: 117 WRS------VADTLRQ--KVEDAVREHPDY---RVVFTGHSLGGALATVAGADLRGNGY 164
>pdb|3NUZ|A Chain A, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|B Chain B, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|C Chain C, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|D Chain D, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|E Chain E, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|F Chain F, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 398
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 199 YASRGYIAIGIDSRYHGERASSKTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYL--- 255
+ GYIA+ +D+ GE + + R L S++ ++ + W + A YL
Sbjct: 160 FVKEGYIAVAVDNPAAGEASDLE---RYTLGSNYDYDVVSRYLLELGWSYLGYASYLDXQ 216
Query: 256 ------TQREDIDPTRIGITGESLG 274
TQ+ I RI ++G SLG
Sbjct: 217 VLNWXKTQKH-IRKDRIVVSGFSLG 240
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 233 KNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFR 291
KNGD P +D A+D ++ +E PT +G+ G + YAAA GFR
Sbjct: 84 KNGDFAPVTWDQAFDEMERQFKRVLKEK-GPTAVGMFGSGQWTVWEGYAAAKLYKAGFR 141
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 233 KNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFR 291
KNGD P +D A+D ++ +E PT +G+ G + YAAA GFR
Sbjct: 84 KNGDFAPVTWDQAFDEMERQFKRVLKEK-GPTAVGMFGSGQWTVWEGYAAAKLYKAGFR 141
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 24/119 (20%)
Query: 172 DNENRPAVVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDALVSS 231
DN N+ V+ +R + W+ L I G R H D SS
Sbjct: 70 DNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSG--CRGH-----------DGFTSS 116
Query: 232 WKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGF 290
W++ + DT K+ D + + D R+ TG +LGG A A AD R G+
Sbjct: 117 WRS------VADTLRQ--KVEDAVREHPDY---RVVFTGHALGGALATVAGADLRGNGY 164
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 251 LADYLTQREDIDPTRIGITGESLGGMHAWYAAA 283
+ D LT+ E I IG+ G SLGG +A +AA
Sbjct: 210 VVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAA 242
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 179 VVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDA 227
+ F T K + W+ PL A+R ++ I + Y+ +RAS+ +A
Sbjct: 8 IRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEA 56
>pdb|4AO6|A Chain A, Native Structure Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
pdb|4AO7|A Chain A, Zinc Bound Structure Of A Novel Cold-Adapted Esterase From
An Arctic Intertidal Metagenomic Library
pdb|4AO8|A Chain A, Peg-Bound Complex Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
Length = 259
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 184 STRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASSK 221
+T K E++ + + RG A+ ID HGERAS +
Sbjct: 66 TTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQ 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,474,418
Number of Sequences: 62578
Number of extensions: 494427
Number of successful extensions: 1146
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 21
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)