BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014535
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34973|YTAP_BACSU Putative hydrolase YtaP OS=Bacillus subtilis (strain 168) GN=ytaP
PE=3 SV=1
Length = 299
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 94/230 (40%), Gaps = 42/230 (18%)
Query: 201 SRGYIAIGIDSRYHGER--ASSKTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYLTQR 258
S GY + ID G+R + +++ L++ G M + +D + DY+ R
Sbjct: 102 SLGYGVLAIDHWGFGDRRGKAESEIFKEMLLT----GKVMWGMM--IYDSLSALDYMQSR 155
Query: 259 EDIDPTRIGITGESLGGMHAWYAAA-DTRYKGFRWAIENDKWQARVGSIKAVFEEARTDL 317
D+ P RIG G S+GG+ AW+ AA D R K DL
Sbjct: 156 SDVQPDRIGTIGMSMGGLMAWWTAALDDRIK------------------------VCVDL 191
Query: 318 GKSTIDKEVVEKV--WDR-----IAPGLASQFDSPYTIPAIAPRPLLIINGAEDPRCPLA 370
S +D V+ K DR P LA F + IAPRP L + G D P
Sbjct: 192 C-SQVDHHVLIKTQNLDRHGFYYYVPSLAKHFSASEIQSLIAPRPHLSLVGVHDRLTPAE 250
Query: 371 GLEIPKARARKAYAEANCSDNFKVVAEPGIGHQMTPFMVKEASDWLDKFL 420
G++ + YA +D ++VV GH T + EA +L K+L
Sbjct: 251 GVDKIEKELTAVYAGQGAADCYRVVRSAS-GHFETAVIRHEAVRFLQKWL 299
>sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168)
GN=yuxL PE=3 SV=3
Length = 657
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 196 LEAYASRGYIAIGIDSR-YHGERASSKTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADY 254
+ A++GY + I+ R HG Y V++ + GD +D D+++ D
Sbjct: 452 FQVLAAKGYAVVYINPRGSHG--------YGQEFVNAVR-GDYGGKDYD---DVMQAVDE 499
Query: 255 LTQRE-DIDPTRIGITGESLGG-MHAWYAAADTRYKGFRWAIENDKWQA--RVGSIKAVF 310
+R+ IDP R+G+TG S GG M W R+K W + V I F
Sbjct: 500 AIKRDPHIDPKRLGVTGGSYGGFMTNWIVGQTNRFKAAVTQRSISNWISFHGVSDIGYFF 559
Query: 311 EEARTDLGKSTIDKEVVEKVWDRIAPGLASQFDSPYTIPAIAPRPLLIINGAEDPRCPL 369
TD E EK+WDR SP A PLLI++G D RCP+
Sbjct: 560 ----TDWQLEHDMFEDTEKLWDR----------SPLKYAANVETPLLILHGERDDRCPI 604
>sp|P70948|YITV_BACSU Putative esterase YitV OS=Bacillus subtilis (strain 168) GN=yitV
PE=4 SV=2
Length = 255
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 20/262 (7%)
Query: 161 LPLLILSMKESDNENRPAVVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASS 220
+P L + +E+ + P V+F+H KE + A +G+ A+ ++ +HGER
Sbjct: 12 IPFLHIVKEENRHRAVPLVIFIHGFTSAKEHNLHIAYLLAEKGFRAVLPEALHHGERGEE 71
Query: 221 KTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWY 280
A G + + ++ L ++ + ID RIG+ G S+GG+
Sbjct: 72 MAVEELA-------GHFWDIVLNEIEEIGVLKNHFEKEGLIDGGRIGLAGTSMGGITT-- 122
Query: 281 AAADTRYKGFRWAIENDKWQARVGSIKAV--FEEARTDLGKSTIDKEVVEKVWDRIAPGL 338
A T Y + + + +GS V F++ + I+ +V E+ ++ L
Sbjct: 123 LGALTAYDWIKAGV------SLMGSPNYVELFQQQIDHIQSQGIEIDVPEEKVQQLMKRL 176
Query: 339 ASQFDSPYTIPAIAPRPLLIINGAEDPRCPLAGLEIPKARARKAYAEANCSDNFKVVAEP 398
+ D + RPLL +GA+D P A + Y+E + + + +
Sbjct: 177 ELR-DLSLQPEKLQQRPLLFWHGAKDKVVPYAPTRKFYDTIKSHYSEQ--PERLQFIGDE 233
Query: 399 GIGHQMTPFMVKEASDWLDKFL 420
H++ V + +W + +L
Sbjct: 234 NADHKVPRAAVLKTIEWFETYL 255
>sp|Q99390|YPT2_ECOLX Uncharacterized 31.7 kDa protein in traX-finO intergenic region
OS=Escherichia coli PE=3 SV=1
Length = 286
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 173 NENRPAVVFLHSTRKCKEWLRPLL-EAYASRGYIAIGIDSRYHGERASSKTTYRDALVSS 231
N P ++ H + L P A+ G+ I D R GE S
Sbjct: 22 NIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRGFGE-------------SD 68
Query: 232 WKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAA-DTRYK 288
+ G +P + D+I + ++ ++E ID RIG+ G SLGG H + AAA D R K
Sbjct: 69 GERGRLVPAM--QTEDIISVINWAEKQECIDNQRIGLWGTSLGGGHVFSAAAQDQRVK 124
>sp|Q8ZN39|YFHR_SALTY Uncharacterized protein YfhR OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=yfhR PE=3 SV=1
Length = 292
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFRWAIENDKWQARVGSIKAVFEE 312
DY+ R D++P R+ + G+SLGG + A G N ++ + G I+A+ +
Sbjct: 137 DYVRHRADVNPERLVLLGQSLGGNNVLAAV------GHCVGCANMRYADQAG-IRAIILD 189
Query: 313 ARTDLGKSTIDKEVVEKVWDRIAPGLASQFDSPYT----IPAIAPRPLLIINGAEDPRCP 368
+ T L S+I +++ PG D Y+ I +++P P+LI++G D P
Sbjct: 190 S-TFLSYSSIANQMI--------PGSGYLLDDRYSADRNIASVSPIPVLILHGTADHVIP 240
Query: 369 LAGLEIPKARARK 381
E A AR+
Sbjct: 241 WQDSEKLYALARE 253
>sp|P29368|YPT1_ECOLX Uncharacterized 31.7 kDa protein in traX-finO intergenic region
OS=Escherichia coli PE=4 SV=1
Length = 286
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 173 NENRPAVVFLHSTRKCKEWLRPLL-EAYASRGYIAIGIDSRYHGERASSKTTYRDALVSS 231
N P ++ H + L P A+ G+ I D R GE S
Sbjct: 22 NIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRGFGE-------------SD 68
Query: 232 WKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYA-AADTRYK 288
+ G +P + D+I + ++ ++E ID RIG+ G SLGG H + A A D R K
Sbjct: 69 GERGRLVPAM--QTEDIISVINWAEKQECIDNQRIGLWGTSLGGGHVFSARAQDQRVK 124
>sp|Q8Z4M8|YHFR_SALTI Uncharacterized protein YfhR OS=Salmonella typhi GN=yhfR PE=3 SV=1
Length = 292
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFRWAIENDKWQARVGSIKAVFEE 312
DY+ R D++P R+ + G+SLGG + A G N ++ + G I+A+ +
Sbjct: 137 DYVRHRADVNPERLVLLGQSLGGNNVLAAV------GHCVGCANMRYADQAG-IRAIVLD 189
Query: 313 ARTDLGKSTIDKEVVEKVWDRIAPGLASQFDSPYT----IPAIAPRPLLIINGAEDPRCP 368
+ T S+I +++ PG D Y+ I +++P P+LI++G D P
Sbjct: 190 S-TFSSYSSIANQMI--------PGSGYLLDDRYSADRNIASVSPIPVLILHGTADHVIP 240
Query: 369 LAGLEIPKARARK 381
E A AR+
Sbjct: 241 WQDSEKLYALARE 253
>sp|Q7N845|GSA_PHOLL Glutamate-1-semialdehyde 2,1-aminomutase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=hemL PE=3
SV=1
Length = 427
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 95 RSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYLYTE 154
+S ++A +PL V H + + D + T + + +C ++F L+ +E +YL
Sbjct: 337 KSAKAANIPLVVNHVGGMFGIFFTDAETVTCYQDVMNCDIERFKHFFHLMLDEGVYLAPS 396
Query: 155 AGEQGRLPL 163
A E G + +
Sbjct: 397 AFEAGFMSI 405
>sp|A9N0P9|GSA_SALPB Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=hemL PE=3 SV=1
Length = 426
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTYYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|B5RHE0|GSA_SALG2 Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEDANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|B4TXQ6|GSA_SALSV Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella
schwarzengrund (strain CVM19633) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + +
Sbjct: 394 APSAFEAGFMSV 405
>sp|B5R3G6|GSA_SALEP Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella enteritidis
PT4 (strain P125109) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|B5FJ01|GSA_SALDC Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella dublin
(strain CT_02021853) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + +
Sbjct: 394 APSAFEAGFMSV 405
>sp|Q8Z9B4|GSA_SALTI Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella typhi
GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + +
Sbjct: 394 APSAFEAGFMSV 405
>sp|B5F8R5|GSA_SALA4 Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella agona
(strain SL483) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + +
Sbjct: 394 APSAFEAGFMSV 405
>sp|B4SUY4|GSA_SALNS Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella newport
(strain SL254) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|A4W6Q1|GSA_ENT38 Glutamate-1-semialdehyde 2,1-aminomutase OS=Enterobacter sp.
(strain 638) GN=hemL PE=3 SV=1
Length = 426
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + VPL V H + + D K T + + C + F L+ EE +YL
Sbjct: 334 GLLEAAEETGVPLVVNHVGGMFGIFFTDAKTVTCYQDVVKCDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + +
Sbjct: 394 APSAFEAGFMSV 405
>sp|A1WYL3|GSA_HALHL Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=hemL PE=3 SV=1
Length = 426
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 99 SAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYLYTEAGEQ 158
+A +PL A + + DD P T E +++C F + +E +YL A E
Sbjct: 341 AAGIPLATNQAGSMFGLFFTDDAPVTRFEQVKACDLDAFNRFFHAMLDEGVYLAPAAFEA 400
Query: 159 GRLPLLILSMKESDN 173
G +S+ DN
Sbjct: 401 G-----FVSLAHDDN 410
>sp|C5BAP9|GSA_EDWI9 Glutamate-1-semialdehyde 2,1-aminomutase OS=Edwardsiella ictaluri
(strain 93-146) GN=hemL PE=3 SV=1
Length = 427
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + R ++PL V H + + D T + + C + F L+ E+ +YL
Sbjct: 334 GLLAAAREEKIPLVVNHVGGMFGIFFTDQPSVTCYQDVLRCDAERFKRFFHLMLEQGIYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + L
Sbjct: 394 APSAFEAGFMSL 405
>sp|P76049|YCJY_ECOLI Uncharacterized protein YcjY OS=Escherichia coli (strain K12)
GN=ycjY PE=4 SV=2
Length = 306
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
Query: 178 AVVFLHSTRKCKEWLR-PLLEAYASRGYIAIGIDSRYHGERASSKTTYRDALVSSWKNGD 236
A+V H KE + A +G++ I D+ Y GE +
Sbjct: 36 AIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLEN---------- 85
Query: 237 TMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLG-GMHAWYAAADTRYKGFR---- 291
P+I D+ + DYLT +D TRIG G G G A A D R K
Sbjct: 86 --PYI--RTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSA 141
Query: 292 ---WAIENDKWQARVGSIKAV-FEEARTDLGKSTI 322
+I + W+ V SI A+ + EA ++ S I
Sbjct: 142 VNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDI 176
>sp|P00632|ELH2_ACIAD 3-oxoadipate enol-lactonase 2 OS=Acinetobacter sp. (strain ADP1)
GN=catD PE=1 SV=3
Length = 267
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 55/225 (24%)
Query: 175 NRPAVVFLHST-RKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDALVSSWK 233
+RPA++F +S W + + AY Y I D+R HG ++ YR
Sbjct: 26 DRPALIFSNSLGTNLSMWQQQI--AYFQDKYFVICYDTRGHGASSTPVGPYR-------- 75
Query: 234 NGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFRWA 293
I D+I L D+L + G S+GG+ + A + +
Sbjct: 76 -------IDQLGTDVIALLDHL------QIPQATFCGISMGGLTGQWLAIHFPERFNQVI 122
Query: 294 IEN--------DKWQARVGSIKAVFEEARTDLGKSTIDK-----------EVVEKVWDRI 334
+ N WQAR ++ E+ T + ++ + E+VEK+ +
Sbjct: 123 VANTAAKIGEAQAWQARAQLVR---EQGLTPIAQTAATRWFTPGFIEDSPEIVEKLSHDL 179
Query: 335 APGLASQFDSPYTIPA---IAPR------PLLIINGAEDPRCPLA 370
A G A + S A + P+ P+L+I GA+DP +A
Sbjct: 180 AQGSAEGYASCCEALAEADVRPQLQRISIPVLVIAGAQDPVTTVA 224
>sp|Q6IRP4|ABHDD_XENLA Alpha/beta hydrolase domain-containing protein 13 OS=Xenopus laevis
GN=abhd13 PE=2 SV=1
Length = 336
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFRWAIEN 296
DY+ R DID T+I + G SLGG A + A++ ++ +EN
Sbjct: 174 DYVMTRPDIDKTKIILFGRSLGGAVAIHLASENAHRICALVLEN 217
>sp|Q5ZJL8|ABHDD_CHICK Alpha/beta hydrolase domain-containing protein 13 OS=Gallus gallus
GN=ABHD13 PE=2 SV=1
Length = 337
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFRWAIEN 296
DY+ R D+D T+I + G SLGG A + A++ ++ +EN
Sbjct: 174 DYVMTRSDLDKTKIFLFGRSLGGAVAIHLASENSHRISAIMVEN 217
>sp|Q6A6K6|RPOB_PROAC DNA-directed RNA polymerase subunit beta OS=Propionibacterium acnes
(strain KPA171202 / DSM 16379) GN=rpoB PE=3 SV=1
Length = 1159
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 284 DTRYKGFRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDKEVVEKVWDRIAP 336
D + + F W + N+ WQ+RV A E RTD+ K +E++++ I+P
Sbjct: 37 DLQVESFNWLVGNEIWQSRV---DAALAEGRTDINT----KSGLEEIFEEISP 82
>sp|Q7L211|ABHDD_HUMAN Alpha/beta hydrolase domain-containing protein 13 OS=Homo sapiens
GN=ABHD13 PE=1 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 251 LADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFRWAIEN 296
+ DY+ R D+D T+I + G SLGG A + A++ ++ +EN
Sbjct: 172 VLDYVMTRPDLDKTKIFLFGRSLGGAVAIHLASENSHRISAIMVEN 217
>sp|Q80UX8|ABHDD_MOUSE Alpha/beta hydrolase domain-containing protein 13 OS=Mus musculus
GN=Abhd13 PE=2 SV=1
Length = 337
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFRWAIEN 296
DY+ R D+D T++ + G SLGG A + A++ ++ +EN
Sbjct: 174 DYVMTRPDLDKTKVFLFGRSLGGAVAIHLASENSHRISAIMVEN 217
>sp|Q6ACX5|RPOB_LEIXX DNA-directed RNA polymerase subunit beta OS=Leifsonia xyli subsp.
xyli (strain CTCB07) GN=rpoB PE=3 SV=1
Length = 1165
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 290 FRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDKEVVEKV 330
F W + ND WQARV + +A + R DL +T +E+ E++
Sbjct: 45 FDWLVGNDAWQARVAAAEA---QGRQDLPAATGLEEIFEEI 82
>sp|A7N7J3|NAPA_VIBHB Periplasmic nitrate reductase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=napA PE=3 SV=1
Length = 829
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 233 KNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFR 291
K+GD P +DTA+D++ + E PT IG+ G + YAAA GFR
Sbjct: 113 KDGDFAPVSWDTAFDIMA-EKWKASLEKKGPTSIGMFGSGQWTVMEGYAAAKMMKAGFR 170
>sp|B4RC55|IF2_PHEZH Translation initiation factor IF-2 OS=Phenylobacterium zucineum
(strain HLK1) GN=infB PE=3 SV=1
Length = 994
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 29/150 (19%)
Query: 260 DIDPTRI-------GITGESLGGMHAWYAAADTRYKGFRWAIENDKWQARVGSIKA---- 308
D DPTR+ I ESLGG + T+ G IEN QA V +KA
Sbjct: 608 DADPTRVINELLQHEIVVESLGGETQAVEVSATQKMGLDDLIENILLQAEVLDLKANPDR 667
Query: 309 ----VFEEARTDLGKSTI-------------DKEVVEKVWDRIAPGLASQFDSPYTIPAI 351
EA+ D G+ + D V W R+ L + +
Sbjct: 668 TADGSVIEAKLDKGRGAVATVLVKRGTLKRGDIVVAGSSWGRVRALLNERGEQLQEATPS 727
Query: 352 APRPLLIINGAEDPRCPLAGLEIPKARARK 381
P +L ++G DP P A +E +ARAR+
Sbjct: 728 TPVEILGLDGTPDPGEPFAVVE-NEARARE 756
>sp|A0LRL3|RPOB_ACIC1 DNA-directed RNA polymerase subunit beta OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=rpoB PE=3
SV=1
Length = 1169
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 290 FRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDKEVVEKV 330
F W + ND W+ARV +A RTD+ S+ +E+ E++
Sbjct: 52 FDWLVGNDAWKARV---EAALAAGRTDVNTSSGLEEIFEEI 89
>sp|P46209|USF_AQUPY Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1
Length = 231
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 177 PAVVFLHSTRKCKEW---------LRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDA 227
P V+ +H EW ++ + + +A G++A D Y G+ A +
Sbjct: 26 PGVIVIH------EWWGLESPLSNIKEICDRFAQEGFVAFAPDF-YEGKYADNPDDAGKL 78
Query: 228 LVSSWKN-GDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAA 283
+ ++N D + IF + D +K Y + P ++G+TG GG + Y A
Sbjct: 79 MTDMFENRMDKVDAIFKASVDFLKECRYTS------PKKVGVTGFCCGGTLSMYFAG 129
>sp|A4SPG7|NAPA_AERS4 Periplasmic nitrate reductase OS=Aeromonas salmonicida (strain
A449) GN=napA PE=3 SV=1
Length = 829
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 233 KNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKGFR 291
KNGD P +D A+D++ T +E PT +G+ G + YAAA GFR
Sbjct: 113 KNGDFAPVSWDQAFDIMAEKFKATLKEK-GPTAVGMFGSGQWTVWEGYAAAKLMKAGFR 170
>sp|A8ABE2|NTPTH_IGNH4 Nucleoside-triphosphatase THEP1 OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=Igni_1066 PE=3 SV=1
Length = 171
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 132 CPKANVENFKKLLKEENLYLYTEAG-EQGRLPLLILSMKESDNENRPAVVFLHSTRKCKE 190
CP A + L K+ ++YL E G + +LP L +M + N+P V H+ + +E
Sbjct: 78 CPGAEEVGVRALSKDCDVYLIDEIGPMELKLPKLREAMLRVVSGNKPFVAVYHARLRDEE 137
Query: 191 WLRPL 195
+LR L
Sbjct: 138 FLRAL 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,177,970
Number of Sequences: 539616
Number of extensions: 7291745
Number of successful extensions: 18993
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18961
Number of HSP's gapped (non-prelim): 46
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)